A chironomid-based reconstruction of summer temperatures in NW Iceland since AD 1650

Science.gov (United States)

Langdon, P. G.; Caseldine, C. J.; Croudace, I. W.; Jarvis, S.; Wastegård, S.; Crowford, T. C.

2011-05-01

Few studies currently exist that aim to validate a proxy chironomid-temperature reconstruction with instrumental temperature measurements. We used a reconstruction from a chironomid percentage abundance data set to produce quantitative summer temperature estimates since AD 1650 for NW Iceland through a transfer function approach, and validated the record against instrumental temperature measurements from Stykkishólmur in western Iceland. The core was dated through Pb-210, Cs-137 and tephra analyses (Hekla 1693) which produced a well-constrained dating model across the whole study period. Little catchment disturbance, as shown through geochemical (Itrax) and loss-on-ignition data, throughout the period further reinforce the premise that the chironomids were responding to temperature and not other catchment or within-lake variables. Particularly cold phases were identified between AD 1683-1710, AD 1765-1780 and AD 1890-1917, with relative drops in summer temperatures in the order of 1.5-2°C. The timing of these cold phases agree well with other evidence of cooler temperatures, notably increased extent of Little Ice Age (LIA) glaciers. Our evidence suggests that the magnitude of summer temperature cooling (1.5-2°C) was enough to force LIA Icelandic glaciers into their maximum Holocene extent, which is in accordance with previous modelling experiments for an Icelandic ice cap (Langjökull).

Morphological identification and COI barcodes of adult flies help determine species identities of chironomid larvae (Diptera, Chironomidae).

Science.gov (United States)

Failla, A J; Vasquez, A A; Hudson, P; Fujimoto, M; Ram, J L

2016-02-01

Establishing reliable methods for the identification of benthic chironomid communities is important due to their significant contribution to biomass, ecology and the aquatic food web. Immature larval specimens are more difficult to identify to species level by traditional morphological methods than their fully developed adult counterparts, and few keys are available to identify the larval species. In order to develop molecular criteria to identify species of chironomid larvae, larval and adult chironomids from Western Lake Erie were subjected to both molecular and morphological taxonomic analysis. Mitochondrial cytochrome c oxidase I (COI) barcode sequences of 33 adults that were identified to species level by morphological methods were grouped with COI sequences of 189 larvae in a neighbor-joining taxon-ID tree. Most of these larvae could be identified only to genus level by morphological taxonomy (only 22 of the 189 sequenced larvae could be identified to species level). The taxon-ID tree of larval sequences had 45 operational taxonomic units (OTUs, defined as clusters with >97% identity or individual sequences differing from nearest neighbors by >3%; supported by analysis of all larval pairwise differences), of which seven could be identified to species or 'species group' level by larval morphology. Reference sequences from the GenBank and BOLD databases assigned six larval OTUs with presumptive species level identifications and confirmed one previously assigned species level identification. Sequences from morphologically identified adults in the present study grouped with and further classified the identity of 13 larval OTUs. The use of morphological identification and subsequent DNA barcoding of adult chironomids proved to be beneficial in revealing possible species level identifications of larval specimens. Sequence data from this study also contribute to currently inadequate public databases relevant to the Great Lakes region, while the neighbor

Long-term patterns of chironomid assemblages in a high elevation stream/lake network (Switzerland – Implications to global change

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Brigitte Lods-Crozet

2012-10-01

Full Text Available A long-term monitoring program was initiated in 2002 on running and standing waters in a high elevation cirque landscape (Macun in the Swiss National Park. The region comprises contrasting basins with different water sources, a glacier-fed basin and two precipitation-fed basins. Sampling of 26 permanent and temporary ponds (or small lakes and of interconnecting streams (10 sites was conducted from 2002 to 2010. Pond macroinvertebrate assemblages were dominated by chironomids with 42 taxa. The Orthocladiinae were the dominant subfamily in richness and abundance with 22 taxa. The greatest diversity was found in ponds located in the south and outlet basins. The inter-year variability for the same pond is high, but no clear temporal trend was noticed in ponds frequently monitored ponds. The Orthocladiinae subfamily was also the richest in the stream sites where 33 taxa were collected. The north and south basins were separated on the basis of chironomid assemblages. The chironomid assemblages in the stream network shows a temporal trend from 2002 but it cannot be linked to any clear change at the community structure level. The higher richness and abundance in stream sites and ponds of the south basin could be related to a greater heterogeneity in water physico-chemistry and substrata, and by the presence of Bryophyta. The understanding of the environmental factors that influence faunal assemblages is crucial for the protection of this sensitive alpine pond network where a relatively high overall regional diversity (49 taxa is detected. From the literature, temperature is recognized as the driving force on changes in chironomid assemblages in alpine systems. Our results support the use of chironomids as flagship indicators in the assessment of climatic change in alpine landscapes.doi: 10.5324/fn.v31i0.1361.Published online: 17 October 2012.

Annual Survey of Horsehair Worm Cysts in Northern Taiwan, with Notes on a Single Seasonal Infection Peak in Chironomid Larvae (Diptera: Chironomidae).

Science.gov (United States)

Chiu, Ming-Chung; Huang, Chin-Gi; Wu, Wen-Jer; Shiao, Shiuh-Feng

2016-06-01

The life cycle of the freshwater horsehair worm typically includes a free-living phase (adult, egg, larva) and a multiple-host parasitic phase (aquatic paratenic host, terrestrial definitive host). Such a life cycle involving water and land can improve energy flow in riparian ecosystems; however, its temporal dynamics in nature have rarely been investigated. This study examined seasonal infection with cysts in larval Chironominae (Diptera: Chironomidae) in northern Taiwan. In the larval chironomids, cysts of 3 horsehair worm species were identified. The cysts of the dominant species were morphologically similar to those of Chordodes formosanus. Infection with these cysts increased suddenly and peaked 2 mo after the reproductive season of the adult horsehair worms. Although adult C. formosanus emerged several times in a year, only 1 distinct infection peak was detected in September in the chironomid larvae. Compared with the subfamily Chironominae, samples from the subfamilies Tanypodinae and Orthocladiinae were less parasitized. This indicates that the feeding behavior of the chironomid host likely affects horsehair worm cyst infections; however, bioconcentration in predatory chironomids was not detected.

Common antigenic determinants of haemoglobin as basis of immunological cross-reactivity between chironomid species (Diptera, Chironomidae): studies with human and animal sera.

Science.gov (United States)

Baur, X; Dewair, M; Haegele, K; Prelicz, H; Scholl, A; Tichy, H

1983-01-01

Chironomids, of which approximately 10,000 species exist, are reported to cause severe immediate type allergic diseases in man. In the present study, immunological cross-reactivity between 14 chironomid species from different continents was proven by RAST inhibition, double immunodiffusion and a new allergoprint technique, based upon PAGE separation of insect crude extracts. Using isolated chironomid haemoglobins and sera of sensitized persons, as well as rabbit antibodies against larval crude extract or against the haemoglobin fraction of Chironomus thummi, it could be proven that cross-reactivity derives at least predominantly from haemoglobin components with common antigenic determinants in the different species. Images Fig. 2 Fig. 7 Fig. 8 Fig. 9 PMID:6197219

Assessing lake eutrophication using chironomids: understanding the nature of community response in different lake types

DEFF Research Database (Denmark)

Langdon, P. G.; Ruiz, Z.; Brodersen, K. P.

2006-01-01

in the original calibration or extended datasets. However, since the transfer functions are based on weighted averages of the trophic optima for the taxa present and not on community similarities, reasonable downcore inferences were produced. Ordination analyses also showed that the lakes retain their 'identity......1. Total phosphorus (TP) and chlorophyll a (Chl a) chironomid inference models ( Brodersen & Lindegaard, 1999 ; Brooks, Bennion & Birks, 2001 ) were used in an attempt to reconstruct changes in nutrients from three very different lake types. Both training sets were expanded, particularly at the low....... A response to nutrients (TP or total nitrogen (TN) ) at this site is also indirect, and the TP reconstruction therefore cannot be reliably interpreted. The third lake, March Ghyll Reservoir has little change in historic chironomid communities, suggesting that this well mixed, relatively unproductive lake has...

The influence of environmental factors and dredging on chironomid larval diversity in urban drainage systems in polders strongly influenced by seepage from large rivers

DEFF Research Database (Denmark)

Vermonden, K.; Brodersen, Klaus Peter; Jacobsen, Dean

2011-01-01

, in urban waters strongly influenced by seepage of large rivers. Chironomid assemblages were studied in urban surface-water systems (man-made drainage ditches) in polder areas along lowland reaches of the rivers Rhine-Meuse in The Netherlands. Multivariate analysis was used to identify the key environmental...... factors. Taxon richness, Shannon index (H'), rareness of species, and life-history strategies at urban locations were compared with available data from similar man-made water bodies in rural areas, and the effectiveness of dredging for restoring chironomid diversity in urban waters was tested. Three...... diversity of chironomid communities in urban waters affected by nutrient-rich seepage or inlet of river water...

Some new records of chironomids (Diptera: Chironomidae from the Czech Republic

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Bitušík Peter

2016-09-01

Full Text Available Six chironomid species: Paraboreochlus minutissimus (Strobl, 1894, Trissopelopia longimanus (Staeger 1839, Boreoheptagyia monticola (Serra-Tosio, 1964, Cricotopus (s.str. similis Goetghebuer 1921, Heleniella serratosioi Ringe, 1976, Krenosmittia camptophleps (Edwards, 1929, were recorded in Czech Republic for the first time. The pupal exuviae were collected in July 2009 from Otava River in the vicinity of Rejštejn village in the central part of the Bohemian Forest. The notes on known distribution and ecology of the species are presented.

The response of chironomid assemblages to mineral richness gradient in the Western Carpathian helocrenes

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Vít Syrovátka

2012-10-01

Full Text Available Chironomid assemblages of helocrene springs were investigated in the Western Carpathians in order to identify potential effect of water mineral richness on the taxonomic structure of the assemblages. A complex gradient considering water chemistry and substratum was used as a measure of basicity (mineral richness. Taxonomic structure, total abundance and abundance of most frequent taxa were related to this gradient with regards to two contrasting habitats: trickle (A and water-loged soil with standing water (B. The variance in chironomid assemblage attributable to basicity was estimated and tested via PERMANOVA as well as the possible effect of the other environmental variables. The response of individual taxa was examined using GAM. The results indicate a strong relationship between basicity and substratum characteristics, with coarser mineral substrata at basic and high amount of organic matter at acidic conditions. Although water chemistry was correlated with and inseparable from these substratum properties, it could not be substituted with them, as they discriminated well only between acidic and basic springs, but did not follow the basicity gradient in either acidic or basic group of springs. Chironomid assemblage showed a strong and systematic response to the complex gradient of mineral richness, which explained the largest portion of variance in both the habitat A and B faunal data and was projected on the first axes of both NMDS ordinations. The assemblage response could be documented by the preference of several taxa for particular mineral richness conditions, while the number of taxa seemed to be highest in the middle of the basicity gradient. As only 17 samples were analysed so far, the results are considered preliminary and, hopefully, more confident results will be available in near future.doi: 10.5324/fn.v31i0.1403.Published online: 17 October 2012.

Production dynamics and life cycle of dominant chironomids (diptera, chironomidae) in a subtropical stream in China: adaptation to variable flow conditions in summer and autumn

Science.gov (United States)

Yan, Yunjun; Li, Xiaoyu

2007-07-01

The production dynamics and trophic basis of 7 dominant species of chironomids were investigated in the area of a second-order river of the Hanjiang River basin, in central China from June 2003 to June 2004. The results showed that Tvetenia discoloripes was by far the most abundant chironomid, dominating the overall standing stock of the taxa. In terms of lif ecycle, Chaetocladius sp., Eukiefferiella potthasti and T. discoloripes developed 1 generation a year, whereas Microtendipes sp. and Pagastia sp. developed two, while Pentaneura sp. and Polypedilum sp. developed three. T. discoloripes was the most productive chironomid with 120.305 8 g/m2. a, Pentaneura sp. and E. potthasti had relatively high production values of >17 g/m2.a, and the rest were 0.5), especially for filter-collectors Microtendipes sp., Chaetocladius sp., Chaetocladius sp., T. discoloripes and Pagastia sp. All species except Pentaneura sp. consumed a large portion of amorphous detritus, constituting more than 90% of their diets, and contributing nearly 90% to their secondary production. All the 7 chironomids represent obvious adaptation to local highly variable climate in summer and autumn in life cycle pattern, production dynamics, and food type.

Iron-coupled inactivation of phosphorus in sediments by macrozoobenthos (chironomid larvae) bioturbation: Evidences from high-resolution dynamic measurements

International Nuclear Information System (INIS)

Chen, Musong; Ding, Shiming; Liu, Ling; Xu, Di; Han, Chao; Zhang, Chaosheng

2015-01-01

The effects of chironomid larvae bioturbation on the lability of phosphorus (P) in sediments were investigated through sediment incubation for 140 days. High-resolution dialysis (HR-Peeper) and diffusive gradients in thin films (DGT) techniques were applied to obtain soluble and labile P/Fe profiles at a millimeter resolution, respectively. The larvae bioturbation decreased concentrations of soluble/labile P and Fe by up to over half of the control at the sediment depths of influence up to 70 and 90 mm respectively. These effects continued over 116 days and disappeared on the 140th days due to eclosion of chironomid larvae. Labile P was highly correlated with labile Fe, while a weak correlation was observed between soluble P and soluble Fe. It was concluded that Fe(II) oxidation and its enhanced adsorption were the major mechanisms responsible for the decreases of soluble and labile P. - Highlights: • High resolution techniques were employed to study bioturbation effects on P. • Larvae bioturbation decreased the concentrations of soluble/labile P and Fe. • Bioturbation effects continued over 116 days and disappeared on the 140th days. • Labile P was more sensitive than pore water SRP in response to bioturbation. • It proved the mechanism of Fe-coupled inactivation of P in bioturbation sediments. - Chironomid larvae bioturation decreased the lability of P in sediments from Fe(II) oxidation and enhanced adsorption of P

Experimental acidification of a poor fen in northwestern Ontario: Effects on emergence of Chironomidae (Diptera)

Energy Technology Data Exchange (ETDEWEB)

Rosenberg, D.M.; Wiens, A.P.; Bilyj, B. [Department of Fisheries and Oceans, Winnipeg, MB (Canada). Central and Arctic Region; Armstrong, L. [Department of Fisheries and Oceans, Winnipeg, MB (Canada). Central and Arctic Region

1995-10-01

The effects of experimental acidification and N fertilization on chironomid emergence from a poor fen in northwestern Ontario were studied from 1984 to 1989. Experimental treatments did not affect the numbers of chironomids emerging weekly, the timing of emergence, or the species composition of emergence during the study period. Weekly emergence counts were higher (P<0.05) from the periphery of the fen than the central part. Total seasonal emergence was higher from an area that was previously burned than from the rest of that swamp, though the difference was not statistically significant. Stability of species composition, despite experimental treatments and physiographic differences in the fen, may be a widespread characteristic of Canadian acidic peatlands. 7 tabs., 4 figs., 23 refs.

A chironomid-based record of temperature variability during the past 4000 years in northern China and its possible societal implications

Science.gov (United States)

Wang, Haipeng; Chen, Jianhui; Zhang, Shengda; Zhang, David D.; Wang, Zongli; Xu, Qinghai; Chen, Shengqian; Wang, Shijin; Kang, Shichang; Chen, Fahu

2018-03-01

Long-term, high-resolution temperature records which combine an unambiguous proxy and precise dating are rare in China. In addition, the societal implications of past temperature change on a regional scale have not been sufficiently assessed. Here, based on the modern relationship between chironomids and temperature, we use fossil chironomid assemblages in a precisely dated sediment core from Gonghai Lake to explore temperature variability during the past 4000 years in northern China. Subsequently, we address the possible regional societal implications of temperature change through a statistical analysis of the occurrence of wars. Our results show the following. (1) The mean annual temperature (TANN) was relatively high during 4000-2700 cal yr BP, decreased gradually during 2700-1270 cal yr BP and then fluctuated during the last 1270 years. (2) A cold event in the Period of Disunity, the Sui-Tang Warm Period (STWP), the Medieval Warm Period (MWP) and the Little Ice Age (LIA) can all be recognized in the paleotemperature record, as well as in many other temperature reconstructions in China. This suggests that our chironomid-inferred temperature record for the Gonghai Lake region is representative. (3) Local wars in Shanxi Province, documented in the historical literature during the past 2700 years, are statistically significantly correlated with changes in temperature, and the relationship is a good example of the potential societal implications of temperature change on a regional scale.

Seasonal variation in Chironomid emergence from coastal pools

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Alexander T. Egan

2015-07-01

Full Text Available Understanding the phenology of emergences can be useful in determining seasonal chironomid life cycle patterns, which are often influenced by ice cover and temperature in cold climates. Lake Superior is the largest lake in North America and with a mean surface temperature of 3.9 °C influences regional climate. Coastal pools at Isle Royale, a wilderness archipelago in the northern part of the lake, occur in dense patches on low-gradient volcanic bedrock between the lakeshore and forest, creating variable microhabitats for Chironomidae. Four sites were sampled monthly from April to October, 2010. Surface-floating pupal exuviae were collected from a series of pools in two zones: a lower zone near the lake influenced by wave splash, and an upper zone near the forest and influenced by upland runoff. We used Jaccard’s and Whittaker’s diversity indexes to test community similarity across months. Temperature loggers in pools collected hourly readings for most of the study. Assemblage emergences were stable in upper pools, with significant similarity across late spring and summer months. Assemblages were seasonally variable in lower pools, with significant dissimilarity across spring, summer, and fall months. Few species in either zone were unique to spring or fall months. However, many summer species in the splash zone had a narrow emergence period occurring during calm weather following distinct increases in mean water temperature. Regardless of input of cold lake water to the lower zone, pools from both zones generally had corresponding temperature trends.

Chironomid (Diptera, Chironomidae species assemblages in northeastern Algerian hydrosystems

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N. Chaib

2013-04-01

Full Text Available The aim of this paper was to analyze the distribution of chironomids (Diptera, Chironomidae, and determine their substrate preferences, from two hydrosystems located in northeastern Algeria: the Kebir-East and the Seybouse wadis. Sixty-five species were recorded in 49 sampling sites distributed along the main courses of the two hydrographic nets and their tributaries. The majority of taxa comprised cosmopolitan species widely distributed along these two hydrosystems. Cricotopus (Cricotopus bicinctus showed the highest abundance and frequency of occurrence (29.52% and was widespread in almost all the sampling sites. Species richness ranged from 4 to 23, Shannon diversity between 0.15 and 0.90, Evenness from 0.23 to 1. A cluster analysis was carried out to represent the different groups of sites sharing similar species composition. Agglomerative cluster analysis grouped the sampling sites into four clusters according to the community data. An Indval analysis was then carried out to detect indicator species for each group of the sampling sites. Cricotopus (Isocladius sylvestris was indicator of the first group of the sampling sites. Orthocladius pedestris, Rheocricotopus chalybeatus and C. bicinctus were indicators of the second group, and Polypedilum cultellatum of the third group. The fourth group was not characterized by any species. Indval analysis allowed also to determine species preferences for substrate size: Corynoneura scutellata and Dicrotendipes nervosus emphasized a preference to fine gravel, and Glyptotendipes pallens to fine sand.

[Key to chironomid pupal exuviae (Diptera: Chironomidae) of tropical high Andean streams].

Science.gov (United States)

Pratt, Narcís; González-Trujillo, Juan David; Ospina-Torres, Rodulfo

2014-12-01

The Chironomidae is a cosmopolitan family of Nematoceran flies with more than 20,000 species described. However the diversity of genera and species of the family in the Andean region beyond the 2,000 m.a.s.l are scarcely known. We conducted faunal surveys and biomonitoring research in different streams of Colombia, Ecuador and Peru from May 2005 to October 2011. Based on specimens collections, a taxonomic key was developed to identify pupae and pupal exuviae of 46 genera of midges (Diptera, Chironomidae) collected from streams at high altitude areas on the Andean tropical mountains. We included illustrations and brief taxonomic descriptions for all genera, of which several ones have not yet been formally described; in this latter case we used the nomenclature of Roback & Coffman (1983). For two genera, Cricotopus and Genus 1, keys to the most com- mon morphospecies were provided. Results showed that in this area the chironomid assemblages are dominated by the members of the subfamily Orthocladiinae (22 genera) followed by the Chironominae (13). Six genera of Tanypodinae were identified, while only three and two genera were present from subfamilies Podonominae and Diamesinae. This key may be very useful for both studies about drift in streams, and for biomonitoring purposes.

Inferring late-Holocene climate in the Ecuadorian Andes using a chironomid-based temperature inference model

Science.gov (United States)

Matthews-Bird, Frazer; Brooks, Stephen J.; Holden, Philip B.; Montoya, Encarni; Gosling, William D.

2016-06-01

Presented here is the first chironomid calibration data set for tropical South America. Surface sediments were collected from 59 lakes across Bolivia (15 lakes), Peru (32 lakes), and Ecuador (12 lakes) between 2004 and 2013 over an altitudinal gradient from 150 m above sea level (a.s.l) to 4655 m a.s.l, between 0-17° S and 64-78° W. The study sites cover a mean annual temperature (MAT) gradient of 25 °C. In total, 55 chironomid taxa were identified in the 59 calibration data set lakes. When used as a single explanatory variable, MAT explains 12.9 % of the variance (λ1/λ2 = 1.431). Two inference models were developed using weighted averaging (WA) and Bayesian methods. The best-performing model using conventional statistical methods was a WA (inverse) model (R2jack = 0.890; RMSEPjack = 2.404 °C, RMSEP - root mean squared error of prediction; mean biasjack = -0.017 °C; max biasjack = 4.665 °C). The Bayesian method produced a model with R2jack = 0.909, RMSEPjack = 2.373 °C, mean biasjack = 0.598 °C, and max biasjack = 3.158 °C. Both models were used to infer past temperatures from a ca. 3000-year record from the tropical Andes of Ecuador, Laguna Pindo. Inferred temperatures fluctuated around modern-day conditions but showed significant departures at certain intervals (ca. 1600 cal yr BP; ca. 3000-2500 cal yr BP). Both methods (WA and Bayesian) showed similar patterns of temperature variability; however, the magnitude of fluctuations differed. In general the WA method was more variable and often underestimated Holocene temperatures (by ca. -7 ± 2.5 °C relative to the modern period). The Bayesian method provided temperature anomaly estimates for cool periods that lay within the expected range of the Holocene (ca. -3 ± 3.4 °C). The error associated with both reconstructions is consistent with a constant temperature of 20 °C for the past 3000 years. We would caution, however, against an over-interpretation at this stage. The reconstruction can only

Induction of mouthpart deformities in chironomid larvae exposed to contaminated sediments

Energy Technology Data Exchange (ETDEWEB)

Di Veroli, Alessandra [Dipartimento di Biologia Cellulare e Ambientale, Universita degli Studi di Perugia, Via Elce Di Sotto, 06123 Perugia (Italy); Goretti, Enzo [Dipartimento di Biologia Cellulare e Ambientale, Universita degli Studi di Perugia, Via Elce Di Sotto, 06123 Perugia (Italy); Paumen, Miriam Leon; Kraak, Michiel H.S.; Admiraal, Wim [Department of Aquatic Ecology and Ecotoxicology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Sciencepark 904, 1098 XH Amsterdam (Netherlands)

2012-07-15

The aim of the present study was to improve the cause-effect relationship between toxicant exposure and chironomid mouthpart deformities, by linking induction of mouthpart deformities to contaminated field sediments, metal mixtures and a mutagenic polycyclic aromatic compound metabolite (acridone). Mouthpart deformities in Chironomus riparius larvae were induced by both the heavy metal mixture and by acridone. A clear correlation between metal concentrations in the sediment and deformities incidence was only observed when the contaminated field sediments were left out of the analysis, probably because these natural sediments contained other toxic compounds, which could be responsible for a higher incidence of deformities than predicted by the measured metal concentrations only. The present study clearly improved the cause-effect relationship between toxicant exposure and the induction of mouthpart deformities. It is concluded that the incidence of mouthpart deformities may better reflect the potential toxicity of contaminated sediments than chemical analysis. - Highlights: Black-Right-Pointing-Pointer We tested the induction of deformities in C. riparius in laboratory toxicity experiments. Black-Right-Pointing-Pointer We used field sediments and spiked sediments with heavy metals and mutagenic PAC. Black-Right-Pointing-Pointer Mouthpart deformities were induced both by heavy metal mixtures and by acridone. Black-Right-Pointing-Pointer A correlation between metal concentrations in the sediment and deformities was found. Black-Right-Pointing-Pointer Mouthpart deformities better reflect the toxicity of sediments than chemical analysis. - Mouthpart deformities of Chironomus riparius larvae better reflect the toxicity of sediments than chemical analysis.

76 FR 76337 - Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for Lost River...

Science.gov (United States)

2011-12-07

... information on the Lost River sucker's and shortnose sucker's biology and habitat, population abundance and... consumed chironomid larvae as well as micro-crustaceans (amphipods, copepods, cladocerans, and ostracods... information above, we identify an abundant food base, including a broad array of chironomids, micro...

Paleoecología: el uso de los quironómidos fósiles (Diptera: Chironomidae en reconstrucciones paleoambientales durante el Cuaternario en la Patagonia Paleoecology: the use of fossil chironomids (Diptera: Chironomidae for paleoenvironmental reconstructions in Patagonia

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Julieta Massaferro

2009-06-01

Full Text Available Entre los indicadores biológicos lacustres más utilizados en las reconstrucciones ambientales, se encuentran el polen, los ostrácodos y las diatomeas, y entre los insectos, los coleópteros y los quironómidos. Este grupo ha cobrado gran importancia en los últimos tiempos, debido a los resultados prometedores que se han obtenido en reconstrucciones climáticas realizadas en América del Norte y Europa. En América del Sur, el uso de los quironómidos fósiles en estudios cuaternarios es relativamente limitado, principalmente por su escaso conocimiento taxonómico regional. La mayor parte de estos estudios fueron realizados en lagos glaciares patagónicos de Argentina y Chile. Las larvas de quironómidos constituyen una valiosa herramienta paleolimnológica, por ser un grupo de organismos altamente sensible a cambios ambientales, tanto naturales como artificiales. Además, es un grupo de insectos ampliamente distribuido y con una abundancia y diversidad relativamente altas. Sus cápsulas cefálicas se preservan en los sedimentos lacustres y poseen caracteres importantes que permiten identificar géneros y muchas veces especies. El estudio de los ensambles de quironómidos en sedimentos lacustres puede ser utilizado con distintos objetivos, por ejemplo, para estudios de eutrofización, ya que responden rápidamente a cambios en la concentración de nutrientes, materia orgánica y otros elementos, como metales pesados. No obstante, uno de los potenciales más importantes de este grupo de insectos es su sensibilidad a los cambios de temperatura, por este motivo, la aplicación más importante de su estudio en sedimentos se centra en las reconstrucciones climáticas. Esta contribución es una síntesis de los resultados de los trabajos publicados en la Patagonia argentina y chilena, sobre la base del uso de los quironómidos fósiles en reconstrucciones paleoambientales.Pollen, ostracods, diatoms and insects such as beetles and chironomids are

Experimental demonstration of an Allee effect in microbial populations

OpenAIRE

Kaul, RajReni B.; Kramer, Andrew M.; Dobbs, Fred C.; Drake, John M.

2016-01-01

Microbial populations can be dispersal limited. However, microorganisms that successfully disperse into physiologically ideal environments are not guaranteed to establish. This observation contradicts the Baas-Becking tenet: ?Everything is everywhere, but the environment selects?. Allee effects, which manifest in the relationship between initial population density and probability of establishment, could explain this observation. Here, we experimentally demonstrate that small populations of Vi...

Oribatid mite (Acari: Oribatida) and Chironomid (Diptera: Chironomidae) communities from a high-Andean cushion peatland in Peru (14°S) and their use for palaeoenvironmental reconstruction during the Nasca cultural period

OpenAIRE

Hense, Jonathan Boray

2016-01-01

The edaphic Oribatid mites and Chironomid larvae of five different successional stages of a high-Andean cushion peatland in southern Peru (14°S) were investigated. In total, 17 Oribatid mite taxa, belonging to eight families could be identified. Taxonomic remarks for the species found and an analysis of community structures are provided. The investigation shows significantly higher Oribatid mite densities in the early and medium successional stages in comparison to the successional climax eco...

Leaf litter as a possible food source for chironomids (Diptera in Brazilian and Portuguese headwater streams Detritos foliares como possível fonte de alimento para Chironomidae (Diptera em riachos de cabeceira brasileiros e portugueses

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Marcos Callisto

2007-06-01

Full Text Available Our objective was to evaluate the potential use of leaf detritus by chironomid larvae. Field and laboratory experiments were performed using leaves and chironomid species collected in Portugal and Brazil. Laboratory experiments under controlled conditions were done using microbial conditioned senescent leaves of Alnus glutinosa (L. Gaertn, Neriumoleander L., Protium heptaphilum (Aubl. March, Protium brasiliense (Spreng Engl., Myrcia guyanensis(Aubl. DC and Miconia chartacea Triana. Laboratory experiments were performed using specimens collected from leaf litter in local streams. Whenever possible, after the experiments, chironomids were allowed to emerge as adults and identified. In Portugal the following taxa were identified: Micropsectra apposita (Walker, 1856, Polypedilum albicorne (Meigen, 1838,Eukiefferiella claripennis Lundbeck (1898, Rheocricotopus (Psilocricotopus atripes Rempel (1937 and Ablabesmyia Johannsen (1905 (Diptera, Chironomidae. Consumption rates ranged from 0.15 ± 0.10 mg (AFDM of leaf animal-1 day-1 (Micropsectra apposita feeding on Alnus glutinosa up to 0.85 ± 0.33 mg (AFDM of leaf animal-1 day-1 (Polypedilum albicorne feeding on Miconia chartacea. In Brazil, the following taxa were identified from leaves: Phaenopsectra sp., Chironomus spp. and Polypedilum sp. and maximum consumption rates reached 0.47 ± 0.28 (AFDM of leaf mg.animal-1.day-1 (Chironomus Meigen (1803 feeding on Protium heptaphilum. Feeding experiments with laboratory cultured specimens, revealed that some chironomids were unable to feed on decomposing leaves (e.g., C. xanthus Rempel (1939 on P.brasiliensis and M.guyanensis. Our results suggest that some stream chironomids (not typical shredders can use leaf litter of riparian vegetation as a complementary food source.O objetivo foi avaliar o potencial uso de detritos foliares por larvas de Chironomidae. Foram realizados experimentos em campo e em laboratório utilizando folhas e larvas de Chironomidae

Evolution of outcrossing in experimental populations of Caenorhabditis elegans.

Directory of Open Access Journals (Sweden)

Henrique Teotonio

Full Text Available Caenorhabditis elegans can reproduce exclusively by self-fertilization. Yet, males can be maintained in laboratory populations, a phenomenon that continues to puzzle biologists. In this study we evaluated the role of males in facilitating adaptation to novel environments. For this, we contrasted the evolution of a fitness component exclusive to outcrossing in experimental populations of different mating systems. We introgressed a modifier of outcrossing into a hybrid population derived from several wild isolates to transform the wild-type androdioecious mating system into a dioecious mating system. By genotyping 375 single-nucleotide polymorphisms we show that the two populations had similar standing genetic diversity available for adaptation, despite the occurrence of selection during their derivation. We then performed replicated experimental evolution under the two mating systems from starting conditions of either high or low levels of diversity, under defined environmental conditions of discrete non-overlapping generations, constant density at high population sizes (N = 10(4, no obvious spatial structure and abundant food resources. During 100 generations measurements of sex ratios and male competitive performance showed: 1 adaptation to the novel environment; 2 directional selection on male frequency under androdioecy; 3 optimal outcrossing rates of 0.5 under androdioecy; 4 the existence of initial inbreeding depression; and finally 5 that the strength of directional selection on male competitive performance does not depend on male frequencies. Taken together, these results suggest that androdioecious males are maintained at intermediate frequencies because outcrossing is adaptive.

DNA Barcoding for Species Identification of Insect Skins: A Test on Chironomidae (Diptera) Pupal Exuviae

Science.gov (United States)

Ekrem, Torbjørn; Stur, Elisabeth

2017-01-01

Abstract Chironomidae (Diptera) pupal exuviae samples are commonly used for biological monitoring of aquatic habitats. DNA barcoding has proved useful for species identification of chironomid life stages containing cellular tissue, but the barcoding success of chironomid pupal exuviae is unknown. We assessed whether standard DNA barcoding could be efficiently used for species identification of chironomid pupal exuviae when compared with morphological techniques and if there were differences in performance between temperate and tropical ecosystems, subfamilies, and tribes. PCR, sequence, and identification success differed significantly between geographic regions and taxonomic groups. For Norway, 27 out of 190 (14.2%) of pupal exuviae resulted in high-quality chironomid sequences that match species. For Costa Rica, 69 out of 190 (36.3%) Costa Rican pupal exuviae resulted in high-quality sequences, but none matched known species. Standard DNA barcoding of chironomid pupal exuviae had limited success in species identification of unknown specimens due to contaminations and lack of matching references in available barcode libraries, especially from Costa Rica. Therefore, we recommend future biodiversity studies that focus their efforts on understudied regions, to simultaneously use morphological and molecular identification techniques to identify all life stages of chironomids and populate the barcode reference library with identified sequences.

An experimental test of alternative population augmentation scenarios.

Science.gov (United States)

Kronenberger, John A; Gerberich, Jill C; Fitzpatrick, Sarah W; Broder, E Dale; Angeloni, Lisa M; Funk, W Chris

2018-01-19

Human land use is fragmenting habitats worldwide and inhibiting dispersal among previously connected populations of organisms, often leading to inbreeding depression and reduced evolutionary potential in the face of rapid environmental change. To combat this augmentation of isolated populations with immigrants is sometimes used to facilitate demographic and genetic rescue. Augmentation with immigrants that are genetically and adaptively similar to the target population effectively increases population fitness, but if immigrants are very genetically or adaptively divergent, augmentation can lead to outbreeding depression. Despite well-cited guidelines for the best practice selection of immigrant sources, often only highly divergent populations remain, and experimental tests of these riskier augmentation scenarios are essentially nonexistent. We conducted a mesocosm experiment with Trinidadian guppies (Poecilia reticulata) to test the multigenerational demographic and genetic effects of augmenting 2 target populations with 3 types of divergent immigrants. We found no evidence of demographic rescue, but we did observe genetic rescue in one population. Divergent immigrant treatments tended to maintain greater genetic diversity, abundance, and hybrid fitness than controls that received immigrants from the source used to seed the mesocosms. In the second population, divergent immigrants had a slightly negative effect in one treatment, and the benefits of augmentation were less apparent overall, likely because this population started with higher genetic diversity and a lower reproductive rate that limited genetic admixture. Our results add to a growing consensus that gene flow can increase population fitness even when immigrants are more highly divergent and may help reduce uncertainty about the use of augmentation in conservation. © 2018 Society for Conservation Biology.

Experimental demonstration of an Allee effect in microbial populations.

Science.gov (United States)

Kaul, RajReni B; Kramer, Andrew M; Dobbs, Fred C; Drake, John M

2016-04-01

Microbial populations can be dispersal limited. However, microorganisms that successfully disperse into physiologically ideal environments are not guaranteed to establish. This observation contradicts the Baas-Becking tenet: 'Everything is everywhere, but the environment selects'. Allee effects, which manifest in the relationship between initial population density and probability of establishment, could explain this observation. Here, we experimentally demonstrate that small populations of Vibrio fischeri are subject to an intrinsic demographic Allee effect. Populations subjected to predation by the bacterivore Cafeteria roenbergensis display both intrinsic and extrinsic demographic Allee effects. The estimated critical threshold required to escape positive density-dependence is around 5, 20 or 90 cells ml(-1)under conditions of high carbon resources, low carbon resources or low carbon resources with predation, respectively. This work builds on the foundations of modern microbial ecology, demonstrating that mechanisms controlling macroorganisms apply to microorganisms, and provides a statistical method to detect Allee effects in data. © 2016 The Author(s).

Experimental estimation of mutation rates in a wheat population with a gene genealogy approach.

Science.gov (United States)

Raquin, Anne-Laure; Depaulis, Frantz; Lambert, Amaury; Galic, Nathalie; Brabant, Philippe; Goldringer, Isabelle

2008-08-01

Microsatellite markers are extensively used to evaluate genetic diversity in natural or experimental evolving populations. Their high degree of polymorphism reflects their high mutation rates. Estimates of the mutation rates are therefore necessary when characterizing diversity in populations. As a complement to the classical experimental designs, we propose to use experimental populations, where the initial state is entirely known and some intermediate states have been thoroughly surveyed, thus providing a short timescale estimation together with a large number of cumulated meioses. In this article, we derived four original gene genealogy-based methods to assess mutation rates with limited bias due to relevant model assumptions incorporating the initial state, the number of new alleles, and the genetic effective population size. We studied the evolution of genetic diversity at 21 microsatellite markers, after 15 generations in an experimental wheat population. Compared to the parents, 23 new alleles were found in generation 15 at 9 of the 21 loci studied. We provide evidence that they arose by mutation. Corresponding estimates of the mutation rates ranged from 0 to 4.97 x 10(-3) per generation (i.e., year). Sequences of several alleles revealed that length polymorphism was only due to variation in the core of the microsatellite. Among different microsatellite characteristics, both the motif repeat number and an independent estimation of the Nei diversity were correlated with the novel diversity. Despite a reduced genetic effective size, global diversity at microsatellite markers increased in this population, suggesting that microsatellite diversity should be used with caution as an indicator in biodiversity conservation issues.

Live Fast, Die Young: Experimental Evidence of Population Extinction Risk due to Climate Change

Science.gov (United States)

Bestion, Elvire; Teyssier, Aimeric; Richard, Murielle; Clobert, Jean; Cote, Julien

2015-01-01

Evidence has accumulated in recent decades on the drastic impact of climate change on biodiversity. Warming temperatures have induced changes in species physiology, phenology, and have decreased body size. Such modifications can impact population dynamics and could lead to changes in life cycle and demography. More specifically, conceptual frameworks predict that global warming will severely threaten tropical ectotherms while temperate ectotherms should resist or even benefit from higher temperatures. However, experimental studies measuring the impacts of future warming trends on temperate ectotherms' life cycle and population persistence are lacking. Here we investigate the impacts of future climates on a model vertebrate ectotherm species using a large-scale warming experiment. We manipulated climatic conditions in 18 seminatural populations over two years to obtain a present climate treatment and a warm climate treatment matching IPCC predictions for future climate. Warmer temperatures caused a faster body growth, an earlier reproductive onset, and an increased voltinism, leading to a highly accelerated life cycle but also to a decrease in adult survival. A matrix population model predicts that warm climate populations in our experiment should go extinct in around 20 y. Comparing our experimental climatic conditions to conditions encountered by populations across Europe, we suggest that warming climates should threaten a significant number of populations at the southern range of the distribution. Our findings stress the importance of experimental approaches on the entire life cycle to more accurately predict population and species persistence in future climates. PMID:26501958

76 FR 7875 - Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take...

Science.gov (United States)

2011-02-11

... the central Idaho and Yellowstone area nonessential experimental populations of gray wolves in the...-0000-C3] Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take of Wolves in the Lolo Elk Management Zone of Idaho; Draft Environmental Assessment AGENCY: Fish...

Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population

DEFF Research Database (Denmark)

Bailey, Susan; Hinz, Aaron; Kassen, Rees

2014-01-01

Conventional wisdom holds that synonymous mutations, nucleotide changes that do not alter the encoded amino acid, have no detectable effect on phenotype or fitness. However, a growing body of evidence from both comparative and experimental studies suggests otherwise. Synonymous mutations have been...... shown to impact gene expression, protein folding and fitness, however, direct evidence that they can be positively selected, and so contribute to adaptation, is lacking. Here we report the recovery of two beneficial synonymous single base pair changes that arose spontaneously and independently...... in an experimentally evolved population of Pseudomonas fluorescens. We show experimentally that these mutations increase fitness by an amount comparable to non-synonymous mutations and that the fitness increases stem from increased gene expression. These results provide unequivocal evidence that synonymous mutations...

76 FR 17439 - Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take...

Science.gov (United States)

2011-03-29

... nonessential experimental population areas for the gray wolf under section 10(j) of the ESA: the Yellowstone...-0000-C3] Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take of Wolves in the West Fork Elk Management Unit of Montana; Draft Environmental Assessment AGENCY...

Experimental study of population inversion in laser plasmas

International Nuclear Information System (INIS)

Bocher, J.L.; Busquet, M.; Combis, M.; Le Breton, J.P.; Louis-Jacquet, M.; Mexmain, J.M.; Naudy, M.

1986-06-01

Thin and thick composite targets of various material (Al, CH, Au) have been irradiated on both circular and linear focal spot with the laser Octal facility at wavelength 1.06 μm and 0.35 μm and laser irradiances (5.10 12 .W/cm 2 to 5.10 14 .W/cm 2 ). X-ray spectra, in the ranges 5-8 A and 15 - 300 A, recorded respectively by means of flat TIAP and grazing incidence spectrographs show an experimental evidence of population inversion in aluminium plasmas

Yield, yield components and dry matter digestibility of alfalfa experimental populations

Directory of Open Access Journals (Sweden)

Katić Slobodan

2010-01-01

Full Text Available Alfalfa is the most important forage crop grown in the temperate regions. It is cultivated for production of vegetative aerial mass used fresh or as hay, and recently as haylage and silage. In many centres worldwide, efforts are made to breed and create new alfalfa cultivars with both higher yields and of higher nutritional value. The aim of this paper was to determine yield and digestibility of 12 experimental populations of alfalfa, and to compare their results to the yields of well-known domestic alfalfa commercial cultivars. The results show significant differences in yield of green forage and dry matter among alfalfa populations, as well as in yield components, height, proportion of leaves in yield and growth rate (tab. 1, 2 and 3. Differences between in vitro digestible dry matter (% and yields of in vitro digestible dry matter (t ha-1 were also significant (tab. 5 and 6. Yield and quality of experimental populations were at the same level or higher than of control cultivars. Synthetic SINUSA exceeded the control cutivars (NS Mediana ZMS V and Banat VS in yield and quality of dry matter. .

Experimental study of population inversion in laser plasmas

International Nuclear Information System (INIS)

Bocher, J.L.; Busquet, M.; Combis, P.; Le Breton, J.P.; Louis-Jacquet, M.; Mexmain, J.M.; Naudy, M.

1986-01-01

Thin and thick composite targets of various materials (Al, CH, Au) have been irradiated on both circular and linear focal spots with the OCTAL laser facility at wavelengths 1.06 μm and 0.35 μm and laser irradiances 5 10 12 w/cm 2 to 5 10 14 w/cm 2 . X ray spectra in the range 5 - 8 A and 15 - 300 A recorded respectively by means of flat TlaP and grazing incidence spectrographs gave some experimental evidence of population inversion in aluminum plasma

Experimental study of population inversion in laser plasmas

Energy Technology Data Exchange (ETDEWEB)

Bocher, J.L.; Busquet, M.; Combis, P.; Le Breton, J.P.; Louis-Jacquet, M.; Mexmain, J.M.; Naudy, M.

1986-10-01

Thin and thick composite targets of various materials (Al, CH, Au) have been irradiated on both circular and linear focal spots with the OCTAL laser facility at wavelengths 1.06 ..mu..m and 0.35 ..mu..m and laser irradiances 5 10/sup 12/ w/cm/sup 2/ to 5 10/sup 14/ w/cm/sup 2/. X-ray spectra in the range 5 - 8 A and 15 - 300 A recorded respectively by means of flat TlaP and grazing incidence spectrographs gave some experimental evidence of population inversion in aluminum plasma.

Experimental design and estimation of growth rate distributions in size-structured shrimp populations

International Nuclear Information System (INIS)

Banks, H T; Davis, Jimena L; Ernstberger, Stacey L; Hu, Shuhua; Artimovich, Elena; Dhar, Arun K

2009-01-01

We discuss inverse problem results for problems involving the estimation of probability distributions using aggregate data for growth in populations. We begin with a mathematical model describing variability in the early growth process of size-structured shrimp populations and discuss a computational methodology for the design of experiments to validate the model and estimate the growth-rate distributions in shrimp populations. Parameter-estimation findings using experimental data from experiments so designed for shrimp populations cultivated at Advanced BioNutrition Corporation are presented, illustrating the usefulness of mathematical and statistical modeling in understanding the uncertainty in the growth dynamics of such populations

First record of larvae of Chironomidae (Insecta, Diptera as prey of Temnocephala sp. (Platyhelminthes, Temnocephalidae, an ectosymbiont on larvae of Corydalidae (Megaloptera

Directory of Open Access Journals (Sweden)

Susana Trivinho-Strixino

2012-09-01

Full Text Available First record of larvae of Chironomidae (Insecta, Diptera as prey of Temnocephala sp. (Platyhelminthes, Temnocephalidae, an ectosymbiont on larvae of Corydalidae (Megaloptera. This study constitutes the first record of Temnocephala Blanchard, an ectosymbiont on Corydalidae, as a possible predator of chironomid larvae. Twenty-eight Corydalidae larvae (Corydalus and Protochauliodes were examined under stereomicroscopic in search for Temnocephala and Chironomidae larvae, of which five megalopteran larvae had 24 Temnocephala sp. associated. Furthermore, eight of these Temnocephala worms had chironomid larvae in their gut contents, an interaction previously unknown. Gut content analyses revealed Corynoneura as the commonest chironomid, but larvae of Larsia, Rheotanytarsus and Tanytarsus were recorded as well. This study included Corydalus and Protochauliodes as hosts for Temnocephala, which might be important for this worm dispersion and population dynamics.

Midges (Diptera:Chironomidae) as indicators of wetland viability in the Alberta Oil Sands region

Energy Technology Data Exchange (ETDEWEB)

Ciborowski, J. J. H.; Whelly, M. P.; Leonhardt, C.; Laing, D. [Windsor Univ., Dept. of Biological Sciences, ON (Canada)

1999-07-01

Thirty-three wetlands northeast of Fort McMurray, Alberta, ten of which are receiving oil sands mine process-affected water (OSPW), have been examined to assess their biological integrity. Physico-chemical and environmental attributes were measured, sediment, zoobenthic, plankton and chlorophyll samples were analyzed. Results of principal component analysis indicated that the wetlands could be categorized into three classes on the basis of three independent combinations of environmental features, namely pH/size/dissolved oxygen; conductivity; and sediment composition. Cluster analysis identified four groups of wetlands. High conductivity wetlands were found to support greater density but reduced richness of benthic population, irrespective of the presence of OSPW. To evaluate OSPW wetland ability to support and maintain benthic populations chironomid larval morphology, density, adult emergence, flight activity, egg-laying behaviour and the ability of eggs to hatch in OSPW were monitored. Results indicated no inhibition of adult chironomid flight activity, egg-laying or hatching by OSPW, although there was some evidence of OSPW reducing chironomid density, diversity and secondary production.

Sex enhances adaptation by unlinking beneficial from detrimental mutations in experimental yeast populations

Directory of Open Access Journals (Sweden)

Gray Jeremy C

2012-03-01

Full Text Available Abstract Background The maintenance of sexuality is a classic problem in evolutionary biology because it is a less efficient mode of reproduction compared with asexuality; however, many organisms are sexual. Theoretical work suggests sex facilitates natural selection, and experimental data support this. However, there are fewer experimental studies that have attempted to determine the mechanisms underlying the advantage of sex. Two main classes of hypotheses have been proposed to explain its advantage: detrimental mutation clearance and beneficial mutation accumulation. Here we attempt to experimentally differentiate between these two classes by evolving Saccharomyces cerevisiae populations that differ only in their ability to undergo sex, and also manipulate mutation rate. We cannot manipulate the types of mutation that occur, but instead propagate populations in both stressful and permissive environments and assume that the extent of detrimental mutation clearance and beneficial mutation incorporation differs between them. Results After 300 mitotic generations interspersed with 11 rounds of sex we found there was no change or difference in fitness between sexuals and asexuals propagated in the permissive environment, regardless of mutation rate. Sex conferred a greater extent of adaptation in the stressful environment, and wild-type and elevated mutation rate sexual populations adapted equivalently. However, the asexual populations with an elevated mutation rate appeared more retarded in their extent of adaptation compared to asexual wild-type populations. Conclusions Sex provided no advantage in the permissive environment where beneficial mutations were rare. We could not evaluate if sex functioned to clear detrimental mutations more effectively or not here as no additional fitness load was observed in the mutator populations. However, in the stressful environment, where detrimental mutations were likely of more consequence, and where

Response of chironomid species (Diptera, Chironomidae to water temperature: effects on species distribution in specific habitats

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L. Marziali

2013-09-01

Full Text Available The response of 443 chironomid species to water temperature was analyzed, with the aim of defining their thermal optimum, tolerance limits and thermal habitat. The database included 4442 samples mainly from Italian river catchments collected from the 1950s up to date. Thermal preferences were calculated separately for larval and pupal specimens and for different habitats: high altitude and lowland lakes in the Alpine ecoregion; lowland lakes in the Mediterranean ecoregion; heavily modified water bodies; kryal, krenal, rhithral and potamal in running waters. Optimum response was calculated as mean water temperature, weighted by species abundances; tolerance as weighted standard deviation; skewness and kurtosis as 3rd and 4th moment statistics. The responses were fitted to normal uni- or plurimodal Gaussian models. Cold stenothermal species showed: i unimodal response, ii tolerance for a narrow temperature range, iii optima closed to their minimum temperature values, iv leptokurtic response. Thermophilous species showed: i optima at different temperature values, ii wider tolerance, iii optima near their maximum temperature values, iv platikurtic response, often fitting a plurimodal model. As expected, lower optima values and narrower tolerance were obtained for kryal and krenal, than for rhithral, potamal and lakes. Thermal response curves were produced for each species and were discussed according to species distribution (i.e. altitudinal range in running water and water depth in lakes, voltinism and phylogeny. Thermal optimum and tolerance limits and the definition of the thermal habitat of species can help predicting the impact of global warming on freshwater ecosystems.

Experimental evidence of population differences in reproductive investment conditional on environmental stochasticity

Energy Technology Data Exchange (ETDEWEB)

Gauthey, Zoé [INRA, UMR 1224, Ecologie Comportementale et Biologie des Populations de Poissons, Aquapôle, quartier Ibarron, 64310 Saint-Pée sur Nivelle (France); Univ Pau & Pays Adour, UMR 1224, Ecologie Comportementale et Biologie des Populations de Poissons, UFR Sciences et Techniques de la Côte Basque, Allée du parc Montaury, 64600 Anglet (France); Panserat, Stéphane [INRA, UR 107, Nutrition Metabolism Aquaculture, Aquapôle, 64310 Saint Pée sur Nivelle (France); Elosegi, Arturo [Faculty of Science and Technology, University of the Basque Country UPV/EHU, 48080 Bilbao (Spain); Herman, Alexandre [INRA, UR 107, Nutrition Metabolism Aquaculture, Aquapôle, 64310 Saint Pée sur Nivelle (France); Tentelier, Cédric [INRA, UMR 1224, Ecologie Comportementale et Biologie des Populations de Poissons, Aquapôle, quartier Ibarron, 64310 Saint-Pée sur Nivelle (France); Univ Pau & Pays Adour, UMR 1224, Ecologie Comportementale et Biologie des Populations de Poissons, UFR Sciences et Techniques de la Côte Basque, Allée du parc Montaury, 64600 Anglet (France); and others

2016-01-15

Environmental stochasticity is expected to shape life histories of species, wherein organisms subjected to strong environmental variation should display adaptive response by being able to tune their reproductive investment. For riverine ecosystems, climate models forecast an increase in the frequency and intensity of extreme events such as floods and droughts. The speed and the mechanisms by which organisms may adapt their reproductive investment are therefore of primary importance to understand how species will cope with such radical environmental changes. In the present study, we sampled spawners from two different populations of wild brown trout, originating from two environments with contrasting levels of flow stochasticity. We placed them in sympatry within an experimental channel during reproductive season. In one modality, water flow was maintained constant, whereas in another modality, water flow was highly variable. Reproductive investment of all individuals was monitored using weight and energetic plasma metabolite variation throughout the reproductive season. Only the populations originating from the most variable environment showed a plastic response to experimental manipulation of water flow, the females being able to reduce their weight variation (from 19.2% to 13.1%) and metabolites variations (from 84.2% to 18.6% for triglycerides for instance) under variable flow conditions. These results imply that mechanisms to cope with environmental stochasticity can differ between populations of the same species, where some populations can be plastic whereas other cannot. - Highlights: • We place two populations of brown trout under contrasting water flow for reproduction. • Energetic metabolite variation is used as a cue of reproductive investment. • In constant flow, both populations show the same reproductive investment. • In variable flow, only one of the populations modifies its reproductive investment. • Divergent evolution of reproductive

Experimental evidence of population differences in reproductive investment conditional on environmental stochasticity

International Nuclear Information System (INIS)

Gauthey, Zoé; Panserat, Stéphane; Elosegi, Arturo; Herman, Alexandre; Tentelier, Cédric

2016-01-01

Environmental stochasticity is expected to shape life histories of species, wherein organisms subjected to strong environmental variation should display adaptive response by being able to tune their reproductive investment. For riverine ecosystems, climate models forecast an increase in the frequency and intensity of extreme events such as floods and droughts. The speed and the mechanisms by which organisms may adapt their reproductive investment are therefore of primary importance to understand how species will cope with such radical environmental changes. In the present study, we sampled spawners from two different populations of wild brown trout, originating from two environments with contrasting levels of flow stochasticity. We placed them in sympatry within an experimental channel during reproductive season. In one modality, water flow was maintained constant, whereas in another modality, water flow was highly variable. Reproductive investment of all individuals was monitored using weight and energetic plasma metabolite variation throughout the reproductive season. Only the populations originating from the most variable environment showed a plastic response to experimental manipulation of water flow, the females being able to reduce their weight variation (from 19.2% to 13.1%) and metabolites variations (from 84.2% to 18.6% for triglycerides for instance) under variable flow conditions. These results imply that mechanisms to cope with environmental stochasticity can differ between populations of the same species, where some populations can be plastic whereas other cannot. - Highlights: • We place two populations of brown trout under contrasting water flow for reproduction. • Energetic metabolite variation is used as a cue of reproductive investment. • In constant flow, both populations show the same reproductive investment. • In variable flow, only one of the populations modifies its reproductive investment. • Divergent evolution of reproductive

Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations.

Science.gov (United States)

Lenski, Richard E

2017-10-01

Evolution is an on-going process, and it can be studied experimentally in organisms with rapid generations. My team has maintained 12 populations of Escherichia coli in a simple laboratory environment for >25 years and 60 000 generations. We have quantified the dynamics of adaptation by natural selection, seen some of the populations diverge into stably coexisting ecotypes, described changes in the bacteria's mutation rate, observed the new ability to exploit a previously untapped carbon source, characterized the dynamics of genome evolution and used parallel evolution to identify the genetic targets of selection. I discuss what the future might hold for this particular experiment, briefly highlight some other microbial evolution experiments and suggest how the fields of experimental evolution and microbial ecology might intersect going forward.

Chironomid-based reconstructions of summer air temperature from lake deposits in Lyndon Stream, New Zealand spanning the MIS 3/2 transition

Science.gov (United States)

Woodward, C. A.; Shulmeister, J.

2007-01-01

We present chironomid-based temperature reconstructions from lake sediments deposited between ca 26,600 cal yr BP and 24,500 cal yr BP from Lyndon Stream, South Island, New Zealand. Summer (February mean) temperatures averaged 1 °C cooler, with a maximum inferred cooling of 3.7 °C. These estimates corroborate macrofossil and beetle-based temperature inferences from the same site and suggest climate amelioration (an interstadial) at this time. Other records from the New Zealand region also show a large degree of variability during the late Otiran glacial sequence (34,000-18,000 cal yr BP) including a phase of warming at the MIS 2/3 transition and a maximum cooling that did not occur until the global LGM (ca 20,000 cal yr BP). The very moderate cooling identified here at the MIS 2/3 transition confirms and enhances the long-standing discrepancy in New Zealand records between pollen and other proxies. Low abundances (<20%) of canopy tree pollen in records from late MIS 3 to the end of MIS 2 cannot be explained by the minor (<5 °C) cooling inferred from this and other studies unless other environmental parameters are considered. Further work is required to address this critical issue.

Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster.

Directory of Open Access Journals (Sweden)

Thomas L Turner

2011-03-01

Full Text Available Body size is a classic quantitative trait with evolutionarily significant variation within many species. Locating the alleles responsible for this variation would help understand the maintenance of variation in body size in particular, as well as quantitative traits in general. However, successful genome-wide association of genotype and phenotype may require very large sample sizes if alleles have low population frequencies or modest effects. As a complementary approach, we propose that population-based resequencing of experimentally evolved populations allows for considerable power to map functional variation. Here, we use this technique to investigate the genetic basis of natural variation in body size in Drosophila melanogaster. Significant differentiation of hundreds of loci in replicate selection populations supports the hypothesis that the genetic basis of body size variation is very polygenic in D. melanogaster. Significantly differentiated variants are limited to single genes at some loci, allowing precise hypotheses to be formed regarding causal polymorphisms, while other significant regions are large and contain many genes. By using significantly associated polymorphisms as a priori candidates in follow-up studies, these data are expected to provide considerable power to determine the genetic basis of natural variation in body size.

RELATIONSHIPS BETWEEN PLANT-DENSITY, OUTCROSSING RATES AND SEED SET IN NATURAL AND EXPERIMENTAL POPULATIONS OF SCABIOSA-COLUMBARIA

NARCIS (Netherlands)

VANTREUREN, R; BIJLSMA, R; OUBORG, NJ; KWAK, MM

Outcrossing rates were estimated in both natural and experimental populations of Scabiosa columbaria, a self-compatible, entomophilous, gynodioecious, protandrous perennial. In natural populations, estimates of the outcrossing rate in hermaphrodites were near to one and ranged from 0.84 +/- 0.07 to

Quantitative summer temperature reconstruction derived from a combined biogenic Si and chironomid record from varved sediments of Lake Silvaplana (south-eastern Swiss Alps) back to AD 1177

Science.gov (United States)

Trachsel, M.; Grosjean, M.; Larocque-Tobler, I.; Schwikowski, M.; Blass, A.; Sturm, M.

2010-09-01

High-resolution quantitative temperature records are needed for placing the recent warming into the context of long-term natural climate variability. In this study we present a quantitative high-resolution (9-year) summer (June-August) temperature reconstruction back to AD 1177 for the south-eastern Swiss Alps. This region is a good predictor for summer temperatures in large parts of western and central Europe. Our reconstruction is based on a combination of the high-frequency component of annually resolved biogenic silica (bSi flux) data and the low-frequency component of decadal chironomid-inferred temperatures from annually laminated well dated sediments (varves) from proglacial Lake Silvaplana, eastern Swiss Alps. For the calibration (period AD 1760-1949) we assess systematically the effects of six different regression methods (Type I regressions: Inverse Regression IR, Inverse Prediction IP, Generalised Least Squares GLS; Type II regressions: Major Axis MA, Ranged Major Axis RMA and Standard Major Axis SMA) with regard to the predicted amplitude and the calibration statistics such as root-mean-square error of prediction (RMSEP), reduction of error (RE) and coefficient of efficiency (CE). We found a trade-off in the regression model choice between a good representation of the amplitude and good calibration statistics. The band-pass filtered bSi flux record is in close agreement both in the structure and the amplitude with two fully independent reconstructions spanning back to AD 1500 and AD 1177, respectively. All known pulses of negative volcanic forcing are represented as cold anomalies in the bSi flux record. Volcanic pulses combined with low solar activity (Spörer and Maunder Minimum) are seen as particularly cold episodes around AD 1460 and AD 1690. The combined chironomid and bSi flux temperature record (RMSEP = 0.57 °C) is in good agreement with the glacier history of the Alps. The warmest (AD 1190) and coldest decades (17th century; 1680-1700) of our

Density and temperature dependent feeding rates in an established and an alien freshwater gammarid fed on chironomid larvae

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Dieter WALOSZEK

2011-02-01

Full Text Available We compared feeding rates of the well-established, non-invasive amphipod Gammarus roeselii with those of the invasive Dikerogammarus villosus at different prey densities and different temperatures in laboratory experiments using chironomid larvae as prey. Feeding rates were very variable in both species but higher in the invader species than in the well-established non-invasive species. These results were age independent. At high temperature (18-20 °C and high prey density (≥1000 prey m-2 one large adult D. villosus consumed 6-9 prey day-1 on average while one G. roeselii consumed 4-7 prey d-1 and one smaller D. villosus of a length of 8-10 mm consumed 2-5 prey d-1 while one G. roeselii of the same length consumed 3 prey d-1. Predation rate decreased considerably from high (18-20 °C to low temperature (3±2 °C, from 9 to 4 prey predator-1 d-1 in D. villosus and from 7.5 to 2.5 prey predator-1 d-1 in G. roeselii. We conclude that both gammarids consumed a biomass in the range of 1/2 to 1/3 to their own biomass and that low predation/feeding rate at low temperature could be a reason why, in some places, indigenous gammarids can re-colonize their former habitats for a short period of time in cold winter and early spring in spite of the presence of the invasive. We further conclude that differences in weight between the species in particular in the experiments with adults can have influenced feeding rates; possibly differences in weight- specific feeding rates are small.

An Asiatic Chironomid in Brazil: morphology, DNA barcode and bionomics

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Gizelle Amora

2015-07-01

Full Text Available In most freshwater ecosystems, aquatic insects are dominant in terms of diversity; however, there is a disproportionately low number of records of alien species when compared to other freshwater organisms. The Chironomidae is one aquatic insect family that includes some examples of alien species around the world. During a study on aquatic insects in Amazonas state (Brazil, we collected specimens of Chironomidae that are similar, at the morphological level, to Chironomus kiiensis Tokunaga and Chironomus striatipennis Kieffer, both with distributions restricted to Asia. The objectives of this study were to provide morphological information on this Chironomus population, to investigate its identity using DNA barcoding and, to provide bionomic information about this species. Chironomus DNA barcode data were obtained from GenBank and Barcode of Life Data Systems (BOLD and, together with our data, were analyzed using the neighbor-joining method with 1000 bootstrap replicates and the genetic distances were estimated using the Kimura-2-parameter. At the morphological level, the Brazilian population cannot be distinguished either from C. striatipennis or C. kiiensis, configuring a species complex but, at the molecular level our studied population is placed in a clade together with C. striatipennis, from South Korea. Bionomic characteristics of the Brazilian Chironomus population differ from the ones of C. kiiensis from Japan, the only species in this species complex with bionomic information available. The Brazilian Chironomus population has a smaller size, the double of the number of eggs and inhabits oligotrophic water, in artificial container. In the molecular analysis, populations of C. striatipennis and C. kiiensis are placed in a clade, formed by two groups: Group A (which includes populations from both named species, from different Asiatic regions and our Brazilian population and Group B (with populations of C. kiiensis from Japan and South Korea

Experimental depletion of different renal interstitial cell populations

International Nuclear Information System (INIS)

Bohman, S.O.; Sundelin, B.; Forsum, U.; Tribukait, B.

1988-01-01

To define different populations of renal interstitial cells and investigate some aspects of their function, we studied the kidneys of normal rats and rats with hereditary diabetes insipidus (DI, Brattleboro) after experimental manipulations expected to alter the number of interstitial cells. DI rats showed an almost complete loss of interstitial cells in their renal papillae after treatment with a high dose of vasopressin. In spite of the lack of interstitial cells, the animals concentrated their urine to the same extent as vasopressin-treated normal rats, indicating that the renomedullary interstitial cells do not have an important function in concentrating the urine. The interstitial cells returned nearly to normal within 1 week off vasopressin treatment, suggesting a rapid turnover rate of these cells. To further distinguish different populations of interstitial cells, we studied the distribution of class II MHC antigen expression in the kidneys of normal and bone-marrow depleted Wistar rats. Normal rats had abundant class II antigen-positive interstitial cells in the renal cortex and outer medulla, but not in the inner medulla (papilla). Six days after 1000 rad whole body irradiation, the stainable cells were almost completely lost, but electron microscopic morphometry showed a virtually unchanged volume density of interstitial cells in the cortex and outer medulla, as well as the inner medulla. Thus, irradiation abolished the expression of the class II antigen but caused no significant depletion of interstitial cells

An experimental field study of delayed density dependence in natural populations of Aedes albopictus.

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Rachael K Walsh

Full Text Available Aedes albopictus, a species known to transmit dengue and chikungunya viruses, is primarily a container-inhabiting mosquito. The potential for pathogen transmission by Ae. albopictus has increased our need to understand its ecology and population dynamics. Two parameters that we know little about are the impact of direct density-dependence and delayed density-dependence in the larval stage. The present study uses a manipulative experimental design, under field conditions, to understand the impact of delayed density dependence in a natural population of Ae. albopictus in Raleigh, North Carolina. Twenty liter buckets, divided in half prior to experimentation, placed in the field accumulated rainwater and detritus, providing oviposition and larval production sites for natural populations of Ae. albopictus. Two treatments, a larvae present and larvae absent treatment, were produced in each bucket. After five weeks all larvae were removed from both treatments and the buckets were covered with fine mesh cloth. Equal numbers of first instars were added to both treatments in every bucket. Pupae were collected daily and adults were frozen as they emerged. We found a significant impact of delayed density-dependence on larval survival, development time and adult body size in containers with high larval densities. Our results indicate that delayed density-dependence will have negative impacts on the mosquito population when larval densities are high enough to deplete accessible nutrients faster than the rate of natural food accumulation.

A DNA Barcode Library for Korean Chironomidae (Insecta: Diptera) and Indexes for Defining Barcode Gap

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Kim, Sungmin; Song, Kyo-Hong; Ree, Han-Il; Kim, Won

2012-01-01

Non-biting midges (Diptera: Chironomidae) are a diverse population that commonly causes respiratory allergies in humans. Chironomid larvae can be used to indicate freshwater pollution, but accurate identification on the basis of morphological characteristics is difficult. In this study, we constructed a mitochondrial cytochrome c oxidase subunit I (COI)-based DNA barcode library for Korean chironomids. This library consists of 211 specimens from 49 species, including adults and unidentified larvae. The interspecies and intraspecies COI sequence variations were analyzed. Sophisticated indexes were developed in order to properly evaluate indistinct barcode gaps that are created by insufficient sampling on both the interspecies and intraspecies levels and by variable mutation rates across taxa. In a variety of insect datasets, these indexes were useful for re-evaluating large barcode datasets and for defining COI barcode gaps. The COI-based DNA barcode library will provide a rapid and reliable tool for the molecular identification of Korean chironomid species. Furthermore, this reverse-taxonomic approach will be improved by the continuous addition of other speceis’ sequences to the library. PMID:22138764

Experimental tests for heritable morphological color plasticity in non-native brown trout (Salmo trutta populations.

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Peter A H Westley

Full Text Available The success of invasive species is frequently attributed to phenotypic plasticity, which facilitates persistence in novel environments. Here we report on experimental tests to determine whether the intensity of cryptic coloration patterns in a global invader (brown trout, Salmo trutta was primarily the result of plasticity or heritable variation. Juvenile F1 offspring were created through experimental crosses of wild-caught parents and reared for 30 days in the laboratory in a split-brood design on either light or dark-colored gravel substrate. Skin and fin coloration quantified with digital photography and image analysis indicated strong plastic effects in response to substrate color; individuals reared on dark substrate had both darker melanin-based skin color and carotenoid-based fin colors than other members of their population reared on light substrate. Slopes of skin and fin color reaction norms were parallel between environments, which is not consistent with heritable population-level plasticity to substrate color. Similarly, we observed weak differences in population-level color within an environment, again suggesting little genetic control on the intensity of skin and fin colors. Taken as whole, our results are consistent with the hypothesis that phenotypic plasticity may have facilitated the success of brown trout invasions and suggests that plasticity is the most likely explanation for the variation in color intensity observed among these populations in nature.

A novel approach to parasite population genetics: experimental infection reveals geographic differentiation, recombination and host-mediated population structure in Pasteuria ramosa, a bacterial parasite of Daphnia.

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Andras, J P; Ebert, D

2013-02-01

The population structure of parasites is central to the ecology and evolution of host-parasite systems. Here, we investigate the population genetics of Pasteuria ramosa, a bacterial parasite of Daphnia. We used natural P. ramosa spore banks from the sediments of two geographically well-separated ponds to experimentally infect a panel of Daphnia magna host clones whose resistance phenotypes were previously known. In this way, we were able to assess the population structure of P. ramosa based on geography, host resistance phenotype and host genotype. Overall, genetic diversity of P. ramosa was high, and nearly all infected D. magna hosted more than one parasite haplotype. On the basis of the observation of recombinant haplotypes and relatively low levels of linkage disequilibrium, we conclude that P. ramosa engages in substantial recombination. Isolates were strongly differentiated by pond, indicating that gene flow is spatially restricted. Pasteuria ramosa isolates within one pond were segregated completely based on the resistance phenotype of the host-a result that, to our knowledge, has not been previously reported for a nonhuman parasite. To assess the comparability of experimental infections with natural P. ramosa isolates, we examined the population structure of naturally infected D. magna native to one of the two source ponds. We found that experimental and natural infections of the same host resistance phenotype from the same source pond were indistinguishable, indicating that experimental infections provide a means to representatively sample the diversity of P. ramosa while reducing the sampling bias often associated with studies of parasite epidemics. These results expand our knowledge of this model parasite, provide important context for the large existing body of research on this system and will guide the design of future studies of this host-parasite system. © 2012 Blackwell Publishing Ltd.

Recovery of Three Arctic Stream Reaches From Experimental Nutrient Enrichment.

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Green, A. C.; Benstead, J. P.; Deegan, L. A.; Peterson, B. J.; Bowden, W. B.; Huryn, A. D.; Slavik, K.; Hershey, A. E.

2005-05-01

We examined multi-year patterns in community recovery from experimental low-concentration nutrient (N+P and P only) enrichment in three reaches of two Arctic tundra streams (Kuparuk River and Oksrukuyik Creek) on the North Slope of Alaska (USA). Rates of recovery varied among community components and depended on duration of enrichment (2 to 13 consecutive growing seasons). Biomass and C:P ratio of epilithic algae returned to reference levels rapidly (within 2 years), regardless of enrichment duration. Bryophyte cover, which increased greatly after long-term enrichment (>8 years), recovered to reference levels only after 7 years, when a storm scoured most remnant moss in the recovering reach. Persistence of bryophytes slowed recovery rates of insect taxa that had either been positively (e.g., Ephemerella, most chironomid taxa) or negatively (e.g., Orthocladius rivulorum) affected by this shift in dominant primary producer and its consequence for benthic habitat. Growth of Arctic grayling (adults and young-of-year), the top predator, returned to reference rates within two years. Recovery of these Arctic stream ecosystems from nutrient enrichment was consequently controlled largely by interactions between duration of enrichment and physical disturbance, mediated through physical habitat shifts caused by bryophytes.

Tools for Genetic Studies in Experimental Populations of Polyploids

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Peter M. Bourke

2018-04-01

Full Text Available Polyploid organisms carry more than two copies of each chromosome, a condition rarely tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the principal challenges faced by polyploid organisms is to evolve stable meiotic mechanisms to faithfully transmit genetic information to the next generation upon which the study of inheritance is based. In this review we look at the tools available to the research community to better understand polyploid inheritance, many of which have only recently been developed. Most of these tools are intended for experimental populations (rather than natural populations, facilitating genomics-assisted crop improvement and plant breeding. This is hardly surprising given that a large proportion of domesticated plant species are polyploid. We focus on three main areas: (1 polyploid genotyping; (2 genetic and physical mapping; and (3 quantitative trait analysis and genomic selection. We also briefly review some miscellaneous topics such as the mode of inheritance and the availability of polyploid simulation software. The current polyploid analytic toolbox includes software for assigning marker genotypes (and in particular, estimating the dosage of marker alleles in the heterozygous condition, establishing chromosome-scale linkage phase among marker alleles, constructing (short-range haplotypes, generating linkage maps, performing genome-wide association studies (GWAS and quantitative trait locus (QTL analyses, and simulating polyploid populations. These tools can also help elucidate the mode of inheritance (disomic, polysomic or a mixture of both as in segmental allopolyploids or reveal whether double reduction and multivalent chromosomal pairing occur. An increasing number of polyploids (or associated diploids are being sequenced, leading to publicly available reference genome assemblies. Much work remains in order to keep pace with developments in genomic technologies. However, such

Tools for Genetic Studies in Experimental Populations of Polyploids.

Science.gov (United States)

Bourke, Peter M; Voorrips, Roeland E; Visser, Richard G F; Maliepaard, Chris

2018-01-01

Polyploid organisms carry more than two copies of each chromosome, a condition rarely tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the principal challenges faced by polyploid organisms is to evolve stable meiotic mechanisms to faithfully transmit genetic information to the next generation upon which the study of inheritance is based. In this review we look at the tools available to the research community to better understand polyploid inheritance, many of which have only recently been developed. Most of these tools are intended for experimental populations (rather than natural populations), facilitating genomics-assisted crop improvement and plant breeding. This is hardly surprising given that a large proportion of domesticated plant species are polyploid. We focus on three main areas: (1) polyploid genotyping; (2) genetic and physical mapping; and (3) quantitative trait analysis and genomic selection. We also briefly review some miscellaneous topics such as the mode of inheritance and the availability of polyploid simulation software. The current polyploid analytic toolbox includes software for assigning marker genotypes (and in particular, estimating the dosage of marker alleles in the heterozygous condition), establishing chromosome-scale linkage phase among marker alleles, constructing (short-range) haplotypes, generating linkage maps, performing genome-wide association studies (GWAS) and quantitative trait locus (QTL) analyses, and simulating polyploid populations. These tools can also help elucidate the mode of inheritance (disomic, polysomic or a mixture of both as in segmental allopolyploids) or reveal whether double reduction and multivalent chromosomal pairing occur. An increasing number of polyploids (or associated diploids) are being sequenced, leading to publicly available reference genome assemblies. Much work remains in order to keep pace with developments in genomic technologies. However, such technologies

Responses of a macroinvertebrate community from a pristine, southern British Columbia, Canada, stream to metals in experimental mesocosms

Energy Technology Data Exchange (ETDEWEB)

Richardson, J.S.; Kiffney, P.M.

2000-03-01

Metal contamination is one of the most widespread impacts on surface waters. Experimental flumes receiving water and aquatic invertebrates from an undisturbed, forested stream were used to determine the impact of metals in a low-conductivity stream. The experimental flumes were exposed to a gradient of doses maintaining a constant ratio of metals (1995: Cu, Zn, Mn, and Pb; 1996: Cu and Zn) for 6 d. Benthos and emigration were sampled from each of the 16 troughs. The overall densities of benthos declined, but not significantly, as the dose of metals increased. On the basis of the slopes of the concentration-response curve, Baetis, Ameletus, and Paraleptophlebia were the most sensitive taxa present. Other taxa (e.g., Nemouridae and Oligochaeta) were mildly affected by high metal concentrations. Chironomidae showed no significant decrease in densities with increasing dose. Chironomids made up >80% of the benthos and is the primary reason for no significant dose effect on overall densities. No treatment effect was observed on either algal standing crop or bacterial respiration rates. The invertebrate genera most affected by exposure to metals in this study were also absent or rare in nearby urban streams with high metal concentrations.

The role of sink to source re-colonisation in the population dynamics of insects living in unstable habitats: an example of terrestrial chironomids

Czech Academy of Sciences Publication Activity Database

Frouz, Jan; Kindlmann, Pavel

2001-01-01

Roč. 93, - (2001), s. 50-58 ISSN 0030-1299 R&D Projects: GA ČR GA526/98/P156 Institutional research plan: CEZ:AV0Z6066911; CEZ:MSM 123100004 Keywords : population dynamic * metapopulations * source -sink population Subject RIV: EH - Ecology, Behaviour Impact factor: 2.499, year: 2001

Cytogenetic comparison of chironomid midge Glyptotendipes glaucus (Meigen, 1818 (Diptera, Chironomidae populations from Northwest Russia and Ukraine (Chernobyl zone

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- -

2012-06-01

Full Text Available Functional characters of polythene chromosomes and chromosomal rearrangements in salivary glands of 177 larvae of Glyptotendipes glaucus (Diptera, Chironomidae from reservoirs of Russia and Ukraine (Chernobyl have been analysed. Similarity of the populations studied based on a pool of chromosomal reorganizations has been established. The general types of inversions in chromosomal arms A, B, D and E have been detected. Influence of radioactive pollution (Chernobyl on functional changes of a nucleus, Balbiani rings, puffs, morphology of disks and interdisks is revealed.

An assessment of Chironomidae as quantitative indicators of past climatic change

Energy Technology Data Exchange (ETDEWEB)

Walker, I.R.; Smol, J.P.; Engstrom, D.R.; Birks, H.J.B. (Queen' s University, Kingston, ON (Canada). Dept. of Biology)

1991-06-01

The distribution among Labrador (Canada) lakes of remains from 21 chironomid taxa (aquatic midges) was analysed by means of canonical correspondence analysis (CCA). Tests with partial CCA of three hypotheses revealed that the distributions of chironomid taxa were significantly correlated with summer surface-water temperature and maximum lake depth, but not sediment organic content. In addition, an exploratory CCA revealed possible relationships of chironomid fauna with residual longitude and Fe concentration. A weighted-averaging-regression/calibration model of the chironomid-temperature relationship (derived from a temperature-constrained CCA) allowed the summer surface-water temperature of lakes to be inferred from chironomid remains. Accurate quantitative reconstructions of late glacial and Holocene temperature variations should be possible from fossil Chironomidae. 60 refs., 7 figs., 6 tabs.

Neonicotinoids thiamethoxam and clothianidin adversely affect the colonisation of invertebrate populations in aquatic microcosms.

Science.gov (United States)

Basley, Kate; Goulson, Dave

2018-04-01

Surface waters are sometimes contaminated with neonicotinoids: a widespread, persistent, systemic class of insecticide with leaching potential. Previous ecotoxicological investigations of this chemical class in aquatic ecosystems have largely focused on the impacts of the neonicotinoid imidacloprid; few empirical, manipulative studies have investigated the effect on invertebrate abundances of two other neonicotinoids which are now more widely used: clothianidin and thiamethoxam. In this study, we employ a simple microcosm semi-field design, incorporating a one-off contamination event, to investigate the effect of these pesticides at field-realistic levels (ranging from 0 to 15 ppb) on invertebrate colonisation and survival in small ephemeral ponds. In line with previous research on neonicotinoid impacts on aquatic invertebrates, significant negative effects of both neonicotinoids were found. There were clear differences between the two chemicals, with thiamethoxam generally producing stronger negative effects than clothianidin. Populations of Chironomids (Diptera) and Ostracoda were negatively affected by both chemicals, while Culicidae appeared to be unaffected by clothianidin at the doses used. Our data demonstrate that field-realistic concentrations of neonicotinoids are likely to reduce populations of invertebrates found in ephemeral ponds, which may have knock on effects up the food chain. We highlight the importance of developing pesticide monitoring schemes for European surface waters.

Demographics of an experimentally released population of elk in Great Smoky Mountains National Park

Science.gov (United States)

Murrow, Jennifer L.; Clark, Joseph D.; Delozier, E. Kim

2009-01-01

We assessed the potential for reestablishing elk (Cervus elaphus) in Great Smoky Mountains National Park (GSMNP), USA, by estimating vital rates of experimentally released animals from 2001 to 2006. Annual survival rates for calves ranged from 0.333 to 1.0 and averaged 0.592. Annual survival for subadult and adult elk (i.e., ≥1 yr of age) ranged from 0.690 to 0.933, depending on age and sex. We used those and other vital rates to model projected population growth and viability using a stochastic individual-based model. The annual growth rate (λ) of the modeled population over a 25-year period averaged 0.996 and declined from 1.059 the first year to 0.990 at year 25. The modeled population failed to attain a positive 25-year mean growth rate in 46.0% of the projections. Poor calf recruitment was an important determinant of low population growth. Predation by black bears (Ursus americanus) was the dominant calf mortality factor. Most of the variance of growth projections was due to demographic variation resulting from the small population size (n  =  61). Management actions such as predator control may help increase calf recruitment, but our projections suggest that the GSMNP elk population may be at risk for some time because of high demographic variation.

Population, 54 Activities: An Experimental Unit, First Draft.

Science.gov (United States)

Denver Univ., CO. Center for Teaching International Relations.

Supplementary teaching activities at the junior- and senior-high school level on issues and topics involving population factors are provided. Topics include population growth, demography, graphing, population distribution, and population control. Community and national census factors as well as world population are studied. Students are helped to…

Experimental evolution in biofilm populations

Science.gov (United States)

Steenackers, Hans P.; Parijs, Ilse; Foster, Kevin R.; Vanderleyden, Jozef

2016-01-01

Biofilms are a major form of microbial life in which cells form dense surface associated communities that can persist for many generations. The long-life of biofilm communities means that they can be strongly shaped by evolutionary processes. Here, we review the experimental study of evolution in biofilm communities. We first provide an overview of the different experimental models used to study biofilm evolution and their associated advantages and disadvantages. We then illustrate the vast amount of diversification observed during biofilm evolution, and we discuss (i) potential ecological and evolutionary processes behind the observed diversification, (ii) recent insights into the genetics of adaptive diversification, (iii) the striking degree of parallelism between evolution experiments and real-life biofilms and (iv) potential consequences of diversification. In the second part, we discuss the insights provided by evolution experiments in how biofilm growth and structure can promote cooperative phenotypes. Overall, our analysis points to an important role of biofilm diversification and cooperation in bacterial survival and productivity. Deeper understanding of both processes is of key importance to design improved antimicrobial strategies and diagnostic techniques. PMID:26895713

Paternal leakage of mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida.

Science.gov (United States)

Hoolahan, Angelique H; Blok, Vivian C; Gibson, Tracey; Dowton, Mark

2011-12-01

Animal mtDNA is typically assumed to be maternally inherited. Paternal mtDNA has been shown to be excluded from entering the egg or eliminated post-fertilization in several animals. However, in the contact zones of hybridizing species and populations, the reproductive barriers between hybridizing organisms may not be as efficient at preventing paternal mtDNA inheritance, resulting in paternal leakage. We assessed paternal mtDNA leakage in experimental crosses of populations of a cyst-forming nematode, Globodera pallida. A UK population, Lindley, was crossed with two South American populations, P5A and P4A. Hybridization of these populations was supported by evidence of nuclear DNA from both the maternal and paternal populations in the progeny. To assess paternal mtDNA leakage, a ~3.4 kb non-coding mtDNA region was analyzed in the parental populations and in the progeny. Paternal mtDNA was evident in the progeny of both crosses involving populations P5A and P4A. Further, paternal mtDNA replaced the maternal mtDNA in 22 and 40 % of the hybrid cysts from these crosses, respectively. These results indicate that under appropriate conditions, paternal leakage occurs in the mtDNA of parasitic nematodes, and supports the hypothesis that hybrid zones facilitate paternal leakage. Thus, assumptions of strictly maternal mtDNA inheritance may be frequently violated, particularly when divergent populations interbreed.

LOD significance thresholds for QTL analysis in experimental populations of diploid species

Science.gov (United States)

Van Ooijen JW

1999-11-01

Linkage analysis with molecular genetic markers is a very powerful tool in the biological research of quantitative traits. The lack of an easy way to know what areas of the genome can be designated as statistically significant for containing a gene affecting the quantitative trait of interest hampers the important prediction of the rate of false positives. In this paper four tables, obtained by large-scale simulations, are presented that can be used with a simple formula to get the false-positives rate for analyses of the standard types of experimental populations with diploid species with any size of genome. A new definition of the term 'suggestive linkage' is proposed that allows a more objective comparison of results across species.

Survival of Salmonella enterica in Freshwater and Sediments and Transmission by the Aquatic Midge Chironomus tentans (Chironomidae: Diptera)

Science.gov (United States)

Moore, Barry C.; Martinez, Edward; Gay, John M.; Rice, Daniel H.

2003-01-01

Survival of a nalidixic acid-resistant strain of Salmonella enterica serovar Typhimurium mr-DT-104 in water and sediments was tested using artificially contaminated aquaria. Water samples remained culture positive for salmonella for up to 54 days. Sediment samples were culture positive up to 119 days. In addition, potential mechanisms for spreading salmonella in the environments by chironomid larvae and adults were tested. We evaluated the acquisition of mr-DT-104 by chironomids from contaminated aquatic sediments and subsequent spread to uncontaminated sediments. Larval chironomids raised in contaminated sediments became culture positive, and the bacteria were carried over to adults after emergence. Contamination of clean sediments by chironomid larvae was not demonstrated. These findings clearly suggest that mr-DT-104 serovar organisms can survive in aquatic sediments for at least several months. Uptake of salmonellae by chironomid larvae and adults suggests that they are possible vectors of mr-DT-104 in both aquatic and terrestrial environments, although the role of larval defecation in movement of bacteria to new sediments was not demonstrated. PMID:12902242

Quaternary paleoecology of aquatic Diptera in tropical and Southern Hemisphere regions, with special reference to the Chironomidae

Science.gov (United States)

Verschuren, Dirk; Eggermont, Hilde

2006-08-01

Chironomid paleoecology in north-temperate regions has made tremendous progress over the past decade, but studies in tropical and Southern Hemisphere regions remain relatively scarce. Reasons for this imbalance are (1) incomplete taxonomic knowledge of chironomid faunas outside Europe and North America, (2) a scarcity of ecological data on local species and genera that might confer bio-indicator value to them, and (3) logistic difficulties hampering the lake surveying necessary to develop paleoenvironmental calibration data sets. Thus far, most chironomid paleoecology in tropical and Southern Hemisphere regions has relied on an indicator-species approach, combining autecological information on local species of which larval morphology is known with the traditional ecological typology of chironomid genera transferred from the Holarctic region. This paper reviews work accomplished to date in tropical and temperate South America, Australia, Africa, and New Zealand, including studies on various families of non-chironomid Diptera with diagnostic fossils. Research has focused mostly on late-Glacial and Holocene climate reconstruction, less on tracing past human disturbance of aquatic ecosystems and their drainage basins. Quantitative chironomid-based paleoenvironmental reconstruction has so far been done only in Australia and Africa. These studies compensated for the lack of traditional surface-sediment calibration data sets, nowadays often the main source of quantitative information on species ecological optima and tolerances, by maximally exploiting archival species-distribution data based on live collections of adult and/or larval midges. This stimulated efforts to achieve trustworthy species-level identification of fossil chironomid remains, and, as a result, the taxonomic resolution of paleoecological studies in Australia and Africa is higher on average than that achieved in European and North American studies.

Nucleolar organizer (NO) size as a measure of instantaneous growth in Chironomus riparius larvae (Diptera: Chironomidae) : a tool for monitoring individual and population responses to stress

Energy Technology Data Exchange (ETDEWEB)

Martin, J.P.; Ciborowski, J.J.; Wytrykush, C. [Windsor Univ., Windsor, ON (Canada)

2009-07-01

This presentation reported on 2 laboratory experiments that were conducted using Chironomus riparius larvae to relate nucleolar growth (NO) size to chironomid growth. In one experiment, 5 treatments varied in diet quality only, which was manipulated by providing midge larvae with 1.0 mg of food per individual per day, but varying the ratio of Tetramin to non-nutritious methyl-cellulose. A second experiment followed a 2 x 2 factorial design. The factors were growth period and diet quality. Diet quality and growth period were found to influence the individual biomass considerably. NO size was related to the quality of the diet provided at the end of the experiment, regardless of larval biomass. Therefore, NO size appears to be related to growth rate at time of collection rather than larval size. The authors proposed using NO size of larvae in natural populations as a measure of growth on which to base estimates of secondary production and as a new way to monitor individual and population responses to environmental stress. Preliminary field measurements of larval production and NO size from oil sands-affected and reference wetlands were found to be consistent with laboratory results.

Nucleolar organizer (NO) size as a measure of instantaneous growth in Chironomus riparius larvae (Diptera: Chironomidae) : a tool for monitoring individual and population responses to stress

International Nuclear Information System (INIS)

Martin, J.P.; Ciborowski, J.J.; Wytrykush, C.

2009-01-01

This presentation reported on 2 laboratory experiments that were conducted using Chironomus riparius larvae to relate nucleolar growth (NO) size to chironomid growth. In one experiment, 5 treatments varied in diet quality only, which was manipulated by providing midge larvae with 1.0 mg of food per individual per day, but varying the ratio of Tetramin to non-nutritious methyl-cellulose. A second experiment followed a 2 x 2 factorial design. The factors were growth period and diet quality. Diet quality and growth period were found to influence the individual biomass considerably. NO size was related to the quality of the diet provided at the end of the experiment, regardless of larval biomass. Therefore, NO size appears to be related to growth rate at time of collection rather than larval size. The authors proposed using NO size of larvae in natural populations as a measure of growth on which to base estimates of secondary production and as a new way to monitor individual and population responses to environmental stress. Preliminary field measurements of larval production and NO size from oil sands-affected and reference wetlands were found to be consistent with laboratory results.

Tube-dwelling invertebrates: tiny ecosystem engineers have large effects in lake ecosystems

NARCIS (Netherlands)

Hölker, Franz; Vanni, Michael J.; Kuiper, Jan J.; Meile, Christof; Grossart, Hans-Peter; Stief, Peter; Adrian, Rita; Lorke, Andreas; Dellwig, Olaf; Brand, Andreas; Hupfer, Michael; Mooij, Wolf M.; Nützmann, Gunnar; Lewandowski, Jörg

2015-01-01

There is ample evidence that tube-dwelling invertebrates such as chironomids significantly alter multiple important ecosystem functions, particularly in shallow lakes. Chironomids pump large water volumes, and associated suspended and dissolved substances, through the sediment and thereby compete

Phenotypic characterisation of cell populations in the brains of horses experimentally infected with West Nile virus.

Science.gov (United States)

Delcambre, G H; Liu, J; Streit, W J; Shaw, G P J; Vallario, K; Herrington, J; Wenzlow, N; Barr, K L; Long, M T

2017-11-01

West Nile virus (WNV), a mosquito borne member of the Flaviviridae, is one of the most commonly diagnosed agents of viral encephalitis in horses and people worldwide. A cassette of markers for formalin-fixed paraffin-embedded tissue and an archive of tissues from experimental infections in the horse were used to investigate the equine neuroimmune response to WNV meningoencephalomyelitis to phenotype the early response to WNV infection in the horse. Quantitative analysis using archived tissue from experimentally infected horses. The thalamus and hindbrain from 2 groups of 6 horses were compared and consisted of a culture positive tissues from WNV experimentally horses, in the other, normal horses. Formalin-fixed paraffin-embedded tissue from the thalamus and hindbrain were immunolabeled for microglia, astrocytes, B cells, macrophages/neutrophils, CD3 + T cells. Fresh frozen tissues were immunolabeled for CD4 + and CD8 + T lymphocyte cell markers. Cell counts were obtained using a computer software program. Differences, after meeting assumptions of abnormality, were computed using a general linear model with a Tukey test (Phorses, Iba-1 + microglia, CD3 + T lymphocyte and MAC387 + macrophage staining were significantly increased. The T cell response for the WNV-challenged horses was mixed, composed of CD4 + and CD8 + T lymphocytes. A limited astrocyte response was also observed in WNV-challenged horses, and MAC387 + and B cells were the least abundant cell populations. The results of this study were limited by a single collection time post-infection. Furthermore, a comprehensive analysis of cellular phenotypes is needed for naturally infected horses. Unfortunately, in clinical horses, there is high variability of sampling in terms of days post-infection and tissue handling. The data show that WNV-challenged horses recruit a mixed T cell population at the onset of neurologic disease. © 2017 EVJ Ltd.

Tube-dwelling invertebrates

NARCIS (Netherlands)

Hölker, Franz; Vanni, Michael J.; Kuiper, Jan J.; Meile, Christof; Grossart, Hans Peter; Stief, Peter; Adrian, Rita; Lorke, Andreas; Dellwig, Olaf; Brand, Andreas; Hupfer, Michael; Mooij, Wolf M.; Nützmann, Gunnar; Lewandowski, Jörg

2015-01-01

There is ample evidence that tube-dwelling invertebrates such as chironomids significantly alter multiple important ecosystem functions, particularly in shallow lakes. Chironomids pump large water volumes, and associated suspended and dissolved substances, through the sediment and thereby compete

Evidence for Isostatic Emergence and Holocene Environmental Change Recorded in Chironomid Assemblages and Sediment Composition of Coastal Lake T1 in SW Greenland

Science.gov (United States)

Berman, K.; Axford, Y.; Lasher, G. E.

2017-12-01

Multi-proxy analysis of a coastal lake in southwest Greenland near Nuuk provides evidence for regional environmental changes, including the timing of isostatic rebound and the temperature history of the area. T1 (informal name) is a small lake 50 km south of Nuuk, at 17.5 m elevation and currently isolated from glacial meltwater drainage. The lake's sediment record begins approximately 9500 cal years BP, when the site was submerged beneath sea level due to glacial isostatic depression following the Last Glacial Maximum. The record captures the transition of the environment from a submerged, glacially-influenced marine site to a non-glacially fed (and initially meromictic) freshwater lake 8600 cal years BP. Magnetic susceptibility, a proxy for sediment minerogenic content, decreased rapidly from 9500 to 8600 years BP, before abruptly stabilizing and remaining relatively low and steady for the rest of the record. The transition to a lacustrine environment was characterized by a rapid and relatively simultaneous increase in primary productivity (inferred from biogenic silica concentrations) and shift towards terrestrial versus marine sources of organic matter (inferred from carbon:nitrogen ratios and nitrogen isotopes) between 8700 and 8400 years BP. Together, these proxies and the presence of marine shells below the transition provide robust evidence for the transition from a marine environment to a freshwater lake in response to regional postglacial isostatic rebound. Within the Holocene, measures of bulk sediment composition (e.g., biogenic silica, loss-on-ignition and magnetic susceptibility) are relatively stable. Chironomid (Insecta: Diptera: Chironomidae) assemblages, which in some environments are quantitative proxies for summer temperature changes, show species-level shifts within the Holocene that will be interpreted in this presentation alongside indicators of landscape change including carbon:nitrogen ratios, bulk sediment spectral reflectance and bulk

Experimental test of an eco-evolutionary dynamic feedback loop between evolution and population density in the green peach aphid.

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Turcotte, Martin M; Reznick, David N; Daniel Hare, J

2013-05-01

An eco-evolutionary feedback loop is defined as the reciprocal impacts of ecology on evolutionary dynamics and evolution on ecological dynamics on contemporary timescales. We experimentally tested for an eco-evolutionary feedback loop in the green peach aphid, Myzus persicae, by manipulating initial densities and evolution. We found strong evidence that initial aphid density alters the rate and direction of evolution, as measured by changes in genotype frequencies through time. We also found that evolution of aphids within only 16 days, or approximately three generations, alters the rate of population growth and predicts density compared to nonevolving controls. The impact of evolution on population dynamics also depended on density. In one evolution treatment, evolution accelerated population growth by up to 10.3% at high initial density or reduced it by up to 6.4% at low initial density. The impact of evolution on population growth was as strong as or stronger than that caused by a threefold change in intraspecific density. We found that, taken together, ecological condition, here intraspecific density, alters evolutionary dynamics, which in turn alter concurrent population growth rate (ecological dynamics) in an eco-evolutionary feedback loop. Our results suggest that ignoring evolution in studies predicting population dynamics might lead us to over- or underestimate population density and that we cannot predict the evolutionary outcome within aphid populations without considering population size.

Polypedilum nubifer, a Chironomid Midge (Diptera: Chironomidae) new to Florida that has nuisance potential

International Nuclear Information System (INIS)

Jacobsen, R.E.; Perry, S.A.

2007-01-01

We document the first record of Polypedilum nubifer in Pan-America. This eurytopic species often reaches severe nuisance population sizes in Australia, Asia, and Hawaii in warm, shallow, eutrophic waters subject to drying. A large population was discovered in newly-constructed infiltration basins and neighboring marshes along the eastern boundary of Everglades National Park. Presently, this population appears minimally invasive to Park marshes and is far removed from urban areas. However, we anticipate this species could disperse and attain nuisance population sizes in suitable urban and agricultural habitats in south Florida. (author)

Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster.

Science.gov (United States)

Jha, Aashish R; Miles, Cecelia M; Lippert, Nodia R; Brown, Christopher D; White, Kevin P; Kreitman, Martin

2015-10-01

Complete genome resequencing of populations holds great promise in deconstructing complex polygenic traits to elucidate molecular and developmental mechanisms of adaptation. Egg size is a classic adaptive trait in insects, birds, and other taxa, but its highly polygenic architecture has prevented high-resolution genetic analysis. We used replicated experimental evolution in Drosophila melanogaster and whole-genome sequencing to identify consistent signatures of polygenic egg-size adaptation. A generalized linear-mixed model revealed reproducible allele frequency differences between replicated experimental populations selected for large and small egg volumes at approximately 4,000 single nucleotide polymorphisms (SNPs). Several hundred distinct genomic regions contain clusters of these SNPs and have lower heterozygosity than the genomic background, consistent with selection acting on polymorphisms in these regions. These SNPs are also enriched among genes expressed in Drosophila ovaries and many of these genes have well-defined functions in Drosophila oogenesis. Additional genes regulating egg development, growth, and cell size show evidence of directional selection as genes regulating these biological processes are enriched for highly differentiated SNPs. Genetic crosses performed with a subset of candidate genes demonstrated that these genes influence egg size, at least in the large genetic background. These findings confirm the highly polygenic architecture of this adaptive trait, and suggest the involvement of many novel candidate genes in regulating egg size. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Science.gov (United States)

Eoche-Bosy, D; Gautier, M; Esquibet, M; Legeai, F; Bretaudeau, A; Bouchez, O; Fournet, S; Grenier, E; Montarry, J

2017-09-01

Improving resistance durability involves to be able to predict the adaptation speed of pathogen populations. Identifying the genetic bases of pathogen adaptation to plant resistances is a useful step to better understand and anticipate this phenomenon. Globodera pallida is a major pest of potato crop for which a resistance QTL, GpaV vrn , has been identified in Solanum vernei. However, its durability is threatened as G. pallida populations are able to adapt to the resistance in few generations. The aim of this study was to investigate the genomic regions involved in the resistance breakdown by coupling experimental evolution and high-density genome scan. We performed a whole-genome resequencing of pools of individuals (Pool-Seq) belonging to G. pallida lineages derived from two independent populations having experimentally evolved on susceptible and resistant potato cultivars. About 1.6 million SNPs were used to perform the genome scan using a recent model testing for adaptive differentiation and association to population-specific covariables. We identified 275 outliers and 31 of them, which also showed a significant reduction in diversity in adapted lineages, were investigated for their genic environment. Some candidate genomic regions contained genes putatively encoding effectors and were enriched in SPRYSECs, known in cyst nematodes to be involved in pathogenicity and in (a)virulence. Validated candidate SNPs will provide a useful molecular tool to follow frequencies of virulence alleles in natural G. pallida populations and define efficient strategies of use of potato resistances maximizing their durability. © 2017 John Wiley & Sons Ltd.

Replaying Evolution to Test the Cause of Extinction of One Ecotype in an Experimentally Evolved Population.

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Caroline B Turner

Full Text Available In a long-term evolution experiment with Escherichia coli, bacteria in one of twelve populations evolved the ability to consume citrate, a previously unexploited resource in a glucose-limited medium. This innovation led to the frequency-dependent coexistence of citrate-consuming (Cit+ and non-consuming (Cit- ecotypes, with Cit-bacteria persisting on the exogenously supplied glucose as well as other carbon molecules released by the Cit+ bacteria. After more than 10,000 generations of coexistence, however, the Cit-lineage went extinct; cells with the Cit-phenotype dropped to levels below detection, and the Cit-clade could not be detected by molecular assays based on its unique genotype. We hypothesized that this extinction was a deterministic outcome of evolutionary change within the population, specifically the appearance of a more-fit Cit+ ecotype that competitively excluded the Cit-ecotype. We tested this hypothesis by re-evolving the population from a frozen population sample taken within 500 generations of the extinction and from another sample taken several thousand generations earlier, in each case for 500 generations and with 20-fold replication. To our surprise, the Cit-type did not go extinct in any of these replays, and Cit-cells also persisted in a single replicate that was propagated for 2,500 generations. Even more unexpectedly, we showed that the Cit-ecotype could reinvade the Cit+ population after its extinction. Taken together, these results indicate that the extinction of the Cit-ecotype was not a deterministic outcome driven by competitive exclusion by the Cit+ ecotype. The extinction also cannot be explained by demographic stochasticity alone, as the population size of the Cit-ecotype should have been many thousands of cells even during the daily transfer events. Instead, we infer that the extinction must have been caused by a rare chance event in which some aspect of the experimental conditions was inadvertently perturbed.

Habitat fragmentation, vole population fluctuations, and the ROMPA hypothesis: An experimental test using model landscapes.

Science.gov (United States)

Batzli, George O

2016-11-01

Increased habitat fragmentation leads to smaller size of habitat patches and to greater distance between patches. The ROMPA hypothesis (ratio of optimal to marginal patch area) uniquely links vole population fluctuations to the composition of the landscape. It states that as ROMPA decreases (fragmentation increases), vole population fluctuations will increase (including the tendency to display multi-annual cycles in abundance) because decreased proportions of optimal habitat result in greater population declines and longer recovery time after a harsh season. To date, only comparative observations in the field have supported the hypothesis. This paper reports the results of the first experimental test. I used prairie voles, Microtus ochrogaster, and mowed grassland to create model landscapes with 3 levels of ROMPA (high with 25% mowed, medium with 50% mowed and low with 75% mowed). As ROMPA decreased, distances between patches of favorable habitat (high cover) increased owing to a greater proportion of unfavorable (mowed) habitat. Results from the first year with intensive live trapping indicated that the preconditions for operation of the hypothesis existed (inversely density dependent emigration and, as ROMPA decreased, increased per capita mortality and decreased per capita movement between optimal patches). Nevertheless, contrary to the prediction of the hypothesis that populations in landscapes with high ROMPA should have the lowest variability, 5 years of trapping indicated that variability was lowest with medium ROMPA. The design of field experiments may never be perfect, but these results indicate that the ROMPA hypothesis needs further rigorous testing. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Range expansions transition from pulled to pushed waves with increasing cooperativity in an experimental microbial population

Science.gov (United States)

Gandhi, Saurabh; Yurtsev, Eugene; Korolev, Kirill; Gore, Jeff

Range expansions are becoming more frequent due to environmental changes and rare long distance dispersal, often facilitated by anthropogenic activities. Simple models in theoretical ecology explain many emergent properties of range expansions, such as a constant expansion velocity, in terms of organism-level properties such as growth and dispersal rates. Testing these quantitative predictions in natural populations is difficult because of large environmental variability. Here, we used a controlled microbial model system to study range expansions of populations with and without intra-specific cooperativity. For non-cooperative growth, the expansion dynamics were dominated by population growth at the low-density front, which pulled the expansion forward. We found these expansions to be in close quantitative agreement with the classical theory of pulled waves by Fisher and Skellam, suitably adapted to our experimental system. However, as cooperativity increased, the expansions transitioned to being pushed, i.e. controlled by growth in the bulk as well as in the front. Although both pulled and pushed waves expand at a constant velocity and appear otherwise similar, their distinct dynamics leads to very different evolutionary consequences. Given the prevalence of cooperative growth in nature, understanding the effects of cooperativity is essential to managing invading species and understanding their evolution.

Effect of overwintering on the frequency of flies infected by the rhabdovirus sigma in experimental populations of Drosophila melanogaster.

Science.gov (United States)

Fleuriet, A

1981-01-01

Artificial overwintering, assuming that adulthood is the overwintering stage, has been performed on six experimental populations of Drosophila melanogaster. In five of them, the frequency of flies infected by the hereditary Rhabdovirus sigma is always in the first spring generation than it was in the last generation of the preceding fall. This result might indicate a higher sensitivity of infected flies to winter conditions, but other interpretations, connected with the genes for resistance to the virus might be considered. In one of the six populations, no effect was detected after any of the three successive winters. It appears therefore that the genetic background of the flies or/and of the propagated virus intervenes in the response to overwintering.

Responses of Chironomidae (Diptera; Insecta to the exclusion of shrimps and Ephemeroptera in a coastal forest stream, Rio de Janeiro, Brazil

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ML. Souza

Full Text Available In a benthic community on a continuous flat granite substrate in a third-order coastal forest stream, the dominant chironomid (Cricotopus increased in number when shrimps (Macrobrachium olfersi and Potimirim glabra and baetid ephemeropterans were excluded by electricity. The response appeared to be mediated by an increase in periphyton and sediments, rather than a reduction of direct predation or interference. Chironomids, periphyton and sediments decreased significantly compared to the control when shrimps only were excluded. Baetid ephemeropteran appeared to be the most important determinants of periphyton and sediment mass; the density of chironomids appeared to follow the quantity of periphyton and sediments.

FAMILY CHIRONOMIDAE.

Science.gov (United States)

Mendes, Humberto Fonseca; Pinho, Luiz Carlos

2016-06-14

Only 30 chironomid species distributed in 16 genera and three subfamilies are formally recorded to Colombia. Another 32 genera and two subfamilies have been recorded on larval stage, with no identification at species level. Many new records, genera and species are expected when focusing on systematics of chironomids from Colombia.

Genetic consequences of the combined effect of ionizing radiation and copper vitriol on experimental Drosophila melanogaster populations

International Nuclear Information System (INIS)

Glushkova, I.V.; Anoshenko, I.P.; Malei, L.P.; Pechkovskaya, A.V.

2004-01-01

The paper studies the influence of the combined effect of gamma-irradiation (15 Gy/generation) and copper vitriol (1 mM concentration) on experimental Dr. melanogaster population with the help of the tests of morphogenetic variability and dominant lethal mutations (DLM). The frequency of morphogenetically changed phenotypes increased under the influence of mutagenic factors of diverse origin and their spectrum was practically unchanged. The DLM test has shown that irradiation and the combined effect of chemical and physical factors exerted a damaging effect, while Cu salt acted as sensitizer considerably intensifying radiation effect. (authors)

Using δ15N of Chironomidae as an index of nitrogen sources and processing within watersheds as part of EPA's National Aquatic Resource Surveys

Science.gov (United States)

Brooks, J. R.; Compton, J.; Herlihy, A.; Sobota, D. J.; Stoddard, J.; Weber, M.

2014-12-01

Nitrogen (N) removal in watersheds is an important regulating ecosystem service that can help reduce N pollution in the nation's waterways. However, processes that remove N such as denitrification are generally determined at point locations. Measures that integrate N processing within watersheds and over time would be particularly useful for assessing the degree of this vital service. Because most N removal processes isotopically enrich the N remaining, δ15N from basal food-chain organisms in aquatic ecosystems can provide information on watershed N processing. As part of EPA's National Aquatic Resource Surveys (NARS), we measured δ15N of Chironomidae in lakes, rivers and streams because these larval aquatic insects were found in abundance in almost every lake and stream in the U.S. Using information on nitrogen loading to the watershed, and total N concentrations within the water, we assessed when elevated chironomid δ15N would indicate N removal rather than possible enriched sources of N. Chironomid δ15N values ranged from -4 to +20 ‰, and were higher in rivers and streams than in lakes (median = 7.6 ‰ vs. 4.8 ‰, respectively), indicating that N was processed to a greater degree in lotic chironomids than in lentic ones. For both, δ15N increased with watershed-level agricultural land cover and N loading, and decreased as precipitation increased. In rivers and streams with high synthetic N loading, we found lower N concentrations in streams with higher chironomid δ15N values, suggesting greater N removal. At low levels of synthetic N loading, the pattern reversed, and streams with enriched chironomid δ15N had higher N concentrations, suggesting enriched sources such as manure or sewage. Our results indicate that chironomid δ15N values can provide valuable information about watershed-level N inputs and processing for national water quality monitoring efforts.

Reconstruction of past methane availability in an Arctic Alaska wetland indicates climate influenced methane release during the past ~12,000 years

Science.gov (United States)

Wooller, Matthew J.; Pohlman, John W.; Gaglioti, Benjamin V.; Langdon, Peter; Jones, Miriam; Anthony, Katey M. Walter; Becker, Kevin W.; Hinrichs, Kai-Uwe; Elvert, Marcus

2012-01-01

Atmospheric contributions of methane from Arctic wetlands during the Holocene are dynamic and linked to climate oscillations. However, long-term records linking climate variability to methane availability in Arctic wetlands are lacking. We present a multi-proxy ~12,000 year paleoecological reconstruction of intermittent methane availability from a radiocarbon-dated sediment core (LQ-West) taken from a shallow tundra lake (Qalluuraq Lake) in Arctic Alaska. Specifically, stable carbon isotopic values of photosynthetic biomarkers and methane are utilized to estimate the proportional contribution of methane-derived carbon to lake-sediment-preserved benthic (chironomids) and pelagic (cladocerans) components over the last ~12,000 years. These results were compared to temperature, hydrologic, and habitat reconstructions from the same site using chironomid assemblage data, oxygen isotopes of chironomid head capsules, and radiocarbon ages of plant macrofossils. Cladoceran ephippia from ~4,000 cal year BP sediments have δ13C values that range from ~−39 to −31‰, suggesting peak methane carbon assimilation at that time. These low δ13C values coincide with an apparent decrease in effective moisture and development of a wetland that included Sphagnum subsecundum. Incorporation of methane-derived carbon by chironomids and cladocerans decreased from ~2,500 to 1,500 cal year BP, coinciding with a temperature decrease. Live-collected chironomids with a radiocarbon age of 1,640 cal year BP, and fossil chironomids from 1,500 cal year BP in the core illustrate that ‘old’ carbon has also contributed to the development of the aquatic ecosystem since ~1,500 cal year BP. The relatively low δ13C values of aquatic invertebrates (as low as −40.5‰) provide evidence of methane incorporation by lake invertebrates, and suggest intermittent climate-linked methane release from the lake throughout the Holocene.

Complexity in a population of Artemia

Energy Technology Data Exchange (ETDEWEB)

Ali, A.A., E-mail: abduladem1@yahoo.co [Electrical Engineering Department, University of Basrah (Iraq); Fortuna, L., E-mail: lfortuna@diees.unict.i [DIEEI, Faculty of Engineering, University of Catania (Italy); Frasca, M., E-mail: mfrasca@diees.unict.i [DIEEI, Faculty of Engineering, University of Catania (Italy); Rashid, M.T., E-mail: mofid76@yahoo.co [Electrical Engineering Department, University of Basrah (Iraq); Xibilia, M.G., E-mail: mxibilia@ingegneria.unime.i [DiSIA, Faculty of Engineering, University of Messina (Italy)

2011-04-15

Highlights: Experiments on collective motion of populations of animals (Artemia salina). Design of low-cost experimental setup for complex systems. Control of collective motion of populations of Artemia. Models of collective motion of populations of Artemia. - Abstract: Artemia salina belongs to a genus of very primordial crustaceans, whose behavior is not widely investigated in literature. Their collective behavior is studied in this paper both experimentally and theoretically. Different experiments have been designed to control the direction of motion of an Artemia population by exploiting their sensitivity to light and to measure the response of the population to light at different wavelengths. Mathematical models have been also derived, explaining the mechanisms underlying Artemia flocking formation when a light spot is applied to the system. The results obtained allow to develop new strategies for distributed control of agents and to test them in a simple and low cost experimental setup.

A Key to the Pupal Exuviae of the Midges (Diptera: Chironomidae) of Everglades National Park, Florida

Science.gov (United States)

Jacobsen, Richard E.

2008-01-01

A key has been developed for identifying the pupal exuviae of 132 taxa of chironomid midges collected in Everglades National Park, as well as 18 additional species from freshwater habitats adjacent to the Park. Descriptions and illustrations are based upon voucher specimens from extensive collections of chironomid pupal exuviae for faunal surveys and biomonitoring research conducted in ENP and surrounding freshwater areas from 1998 to 2007. The key includes taxonomic comments for confirming identifications, as well as brief summaries of the distribution and ecology of each species in southern Florida waters. Information is also provided on the morphology of chironomid pupal exuviae, recommended references for identifying pupal exuviae, techniques for making slides, and methods to confirm proper identification.

Comparative ecotoxicity of imidacloprid and dinotefuran to aquatic insects in rice mesocosms.

Science.gov (United States)

Kobashi, Koji; Harada, Takaaki; Adachi, Yoshihiro; Mori, Miho; Ihara, Makoto; Hayasaka, Daisuke

2017-04-01

There are growing concerns about the impacts of neonicotinoid insecticides on ecosystems worldwide, and yet ecotoxicity of many of these chemicals at community or ecosystem levels have not been evaluated under realistic conditions. In this study, effects of two neonicotinoid insecticides, imidacloprid and dinotefuran, on aquatic insect assemblages were evaluated in experimental rice mesocosms. During the 5-month period of the rice-growing season, residual concentrations of imidacloprid were 5-10 times higher than those of dinotefuran in both soil and water. Imidacloprid treatment (10kg/ha) reduced significantly the populations of, Crocothemis servilia mariannae and Lyriothemis pachygastra nymphs, whereas those of Orthetrum albistylum speciosum increased slightly throughout the experimental period. However, Notonecta triguttata, which numbers were high from the start, later declined, indicating possible delayed chronic toxicity, while Guignotus japonicus disappeared. In contrast, dinotefuran (10kg/ha) did not decrease the populations of any species, but rather increased the abundance of some insects, particularly Chironominae spp. larvae and C. servilia mariannae nymphs, with the latter being 1.7x higher than those of controls. This was an indirect effect resulting from increased prey (e.g., chironomid larvae) and lack of competition with other dragonfly species. The susceptibilities of dragonfly nymphs to neonicotinoids, particularly imidacloprid, were consistent with those reported elsewhere. In general, imidacloprid had higher impacts on aquatic insects compared to dinotefuran. Copyright © 2016 Elsevier Inc. All rights reserved.

The response of chironomidae (Diptera) to a long-term exclusion of terrestrial organic matter

Science.gov (United States)

Sally A. Entrekin; J. Bruce Wallace; Susan L. Eggert

2007-01-01

We examined the effects of a seven-year detrital exclusion on chironomid assemblages in an Appalachian headwater stream. We hypothesized that litter exclusion would lead to a reduction in all chironomids at both the subfamily and generic levels because organic matter serves as both food and habitat in these headwater streams. Tanytarsini total abundance and biomass...

Complexity in a population of Artemia

International Nuclear Information System (INIS)

Ali, A.A.; Fortuna, L.; Frasca, M.; Rashid, M.T.; Xibilia, M.G.

2011-01-01

Highlights: → Experiments on collective motion of populations of animals (Artemia salina). → Design of low-cost experimental setup for complex systems. → Control of collective motion of populations of Artemia. → Models of collective motion of populations of Artemia. - Abstract: Artemia salina belongs to a genus of very primordial crustaceans, whose behavior is not widely investigated in literature. Their collective behavior is studied in this paper both experimentally and theoretically. Different experiments have been designed to control the direction of motion of an Artemia population by exploiting their sensitivity to light and to measure the response of the population to light at different wavelengths. Mathematical models have been also derived, explaining the mechanisms underlying Artemia flocking formation when a light spot is applied to the system. The results obtained allow to develop new strategies for distributed control of agents and to test them in a simple and low cost experimental setup.

A 150-year record of recent changes in human activity and eutrophication of Lake Wushan from the middle reach of the Yangze River, China

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Xiangdong YANG

2010-08-01

Full Text Available In order to determine baseline conditions (pre-impact and recent changes to lakes on the middle reach of the Yangtze River, China, a lake sediment core was extracted from Lake Wushan covering the last ca 150 years. Detailed chemical, biological (subfossil chironomids, and physical analyses of the lake sediments were undertaken. The data showed consistent trends of increased productivity since the early 1920s, notably significant changes in the chironomid fauna which were associated with changes in the sedimentological and stable isotope proxies. More typically eutrophic chironomid taxa first appeared around this time that had not been present in the lake since at least the 1860s. Further increases in productivity occurred around the 1950s which coincided with the local decline and extirpation of some chironomid taxa, particularly macrophyte associated taxa, which had been present in the lake since at least the late 19th Century. A chironomid-inferred water total phosphorus (CI-TP reconstruction produced accurate levels of water TP compared with contemporary measurements (207.4 μg L-1 TP, and suggested that levels for the late 19th Century were relatively low (50-60 μg L-1 TP. These reconstructions illustrate the baseline levels that existed pre-impact and provide potential targets for restoration, but they also show the magnitude of human impact in this region, which has increased the nutrient content of Lake Wushan fourfold within the last ca 100 years.

Multi-scale approach to the environmental factors effects on spatio-temporal variability of Chironomus salinarius (Diptera: Chironomidae) in a French coastal lagoon

Science.gov (United States)

Cartier, V.; Claret, C.; Garnier, R.; Fayolle, S.; Franquet, E.

2010-03-01

The complexity of the relationships between environmental factors and organisms can be revealed by sampling designs which consider the contribution to variability of different temporal and spatial scales, compared to total variability. From a management perspective, a multi-scale approach can lead to time-saving. Identifying environmental patterns that help maintain patchy distribution is fundamental in studying coastal lagoons, transition zones between continental and marine waters characterised by great environmental variability on spatial and temporal scales. They often present organic enrichment inducing decreased species richness and increased densities of opportunist species like C hironomus salinarius, a common species that tends to swarm and thus constitutes a nuisance for human populations. This species is dominant in the Bolmon lagoon, a French Mediterranean coastal lagoon under eutrophication. Our objective was to quantify variability due to both spatial and temporal scales and identify the contribution of different environmental factors to this variability. The population of C. salinarius was sampled from June 2007 to June 2008 every two months at 12 sites located in two areas of the Bolmon lagoon, at two different depths, with three sites per area-depth combination. Environmental factors (temperature, dissolved oxygen both in sediment and under water surface, sediment organic matter content and grain size) and microbial activities (i.e. hydrolase activities) were also considered as explanatory factors of chironomid densities and distribution. ANOVA analysis reveals significant spatial differences regarding the distribution of chironomid larvae for the area and the depth scales and their interaction. The spatial effect is also revealed for dissolved oxygen (water), salinity and fine particles (area scale), and for water column depth. All factors but water column depth show a temporal effect. Spearman's correlations highlight the seasonal effect

Carbon and nitrogen stable isotope ratios analysis of food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) in strongly acidic lake Katanuma

International Nuclear Information System (INIS)

Doi, Hideyuki; Kikuchi, Eisuke; Shikano, Shuichi

2001-01-01

The food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) were analyzed using carbon and nitrogen stable isotope ratios in Lake Katanuma. Lake Katanuma is a volcanic and strongly acidic lake (average pH 2.2). In Lake Katanuma, potential sources of diets for the chironomid larvae are limited including a benthic diatom (Pinnularia braunii), a phytoplankton (Chlamydomonas acidophila), sulfate oxidizing bacteria, and vascular plants supplied from vegetation surrounding the lake. Based on the average carbon and nitrogen isotope ratios among these potential sources and sediment, benthic diatoms were considered to be most probable food source of the chironomid larvae. δ 13 C values of the chironomid were significantly different among seasons and habitat depths, suggesting that diet of C. acerbiphilus changed seasonally and with habitat depth. (author)

Long-term dim light during nighttime changes activity patterns and space use in experimental small mammal populations.

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Hoffmann, Julia; Palme, Rupert; Eccard, Jana Anja

2018-07-01

Artificial light at night (ALAN) is spreading worldwide and thereby is increasingly interfering with natural dark-light cycles. Meanwhile, effects of very low intensities of light pollution on animals have rarely been investigated. We explored the effects of low intensity ALAN over seven months in eight experimental bank vole (Myodes glareolus) populations in large grassland enclosures over winter and early breeding season, using LED garden lamps. Initial populations consisted of eight individuals (32 animals per hectare) in enclosures with or without ALAN. We found that bank voles under ALAN experienced changes in daily activity patterns and space use behavior, measured by automated radiotelemetry. There were no differences in survival and body mass, measured with live trapping, and none in levels of fecal glucocorticoid metabolites. Voles in the ALAN treatment showed higher activity at night during half moon, and had larger day ranges during new moon. Thus, even low levels of light pollution as experienced in remote areas or by sky glow can lead to changes in animal behavior and could have consequences for species interactions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Quantitative Temperature Reconstructions from Holocene and Late Glacial Lake Sediments in the Tropical Andes using Chironomidae (non-biting midges)

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Matthews-Bird, F.; Gosling, W. D.; Brooks, S. J.; Montoya, E.; Coe, A. L.

2014-12-01

Chironomidae (non-biting midges) is a family of two-winged aquatic insects of the order Diptera. They are globally distributed and one of the most diverse families within aquatic ecosystems. The insects are stenotopic, and the rapid turnover of species and their ability to colonise quickly favourable habitats means chironomids are extremely sensitive to environmental change, notably temperature. Through the development of quantitative temperature inference models chironomids have become important palaeoecological tools. Proxies capable of generating independent estimates of past climate are crucial to disentangling climate signals and ecosystem response in the palaeoecological record. This project has developed the first modern environmental calibration data set in order to use chironomids from the Tropical Andes as quantitative climate proxies. Using surface sediments from c. 60 lakes from Bolivia, Peru and Ecuador we have developed an inference model capable of reconstructing temperatures, with a prediction error of 1-2°C, from fossil assemblages. Here we present the first Lateglacial and Holocene chironomid-inferred temperature reconstructions from two sites in the tropical Andes. The first record, from a high elevation (4153 m asl) lake in the Bolivian Andes, shows persistently cool temperatures for the past 15 kyr, punctuated by warm episodes in the early Holocene (9-10 kyr BP). The chironomid-inferred Holocene temperature trends from a lake sediment record on the eastern Andean flank of Ecuador (1248 m asl) spanning the last 5 millennia are synchronous with temperature changes in the NGRIP ice core record. The temperature estimates suggest along the eastern flank of the Andes, at lower latitudes (~1°S), climate closely resemble the well-established fluctuations of the Northern Hemisphere for this time period. Late-glacial climate fluctuations across South America are still disputed with some palaeoecological records suggesting evidence for Younger Dryas

Experimental evidence for a demographic cline in Panstrongylus megistus populations

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Barbosa Silvia E

2001-01-01

Full Text Available The population biology of three populations of Panstrongylus megistus was compared to determine possible influence on the behaviour and epidemiological importance of this species. The results demonstrated differences in terms of egg eclosion time, nymphal mortality and development rates, and feeding and defaecation rates. These differences appeared to follow a geographical cline, primarily reflecting different degrees of adaptation to domestic habitats.

Effects of experimental removal of barred owls on population demography of northern spotted owls in Washington and Oregon—2015 progress report

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Wiens, J. David; Dugger, Katie M.; Lewicki, Krista E.; Simon, David C.

2016-03-14

Evidence indicates that competition with newly established barred owls (Strix varia) is causing rapid declines in populations of northern spotted owls (Strix occidentalis caurina), and that the longterm persistence of spotted owls may be in question without additional management intervention. A pilot study in California showed that lethal removal of barred owls in combination with habitat conservation may be able to slow or even reverse population declines of spotted owls at local scales, but it remains unknown whether similar results can be obtained in larger areas with different forest conditions and where barred owls are more abundant. In 2015, we implemented a before-after-controlimpact (BACI) experimental design on two study areas in Oregon and Washington with at least 20 years of pre-treatment demographic data on spotted owls to determine if removal of barred owls can improve population trends of spatially associated spotted owls. Here we provide an overview of our research accomplishments and preliminary results in Oregon and Washington in 2015.

Carbon and nitrogen stable isotope ratios analysis of food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) in strongly acidic lake Katanuma

Energy Technology Data Exchange (ETDEWEB)

Doi, Hideyuki [Tohoku Univ., Sendai (Japan). Graduate School of Science; Kikuchi, Eisuke; Shikano, Shuichi

2001-12-01

The food sources for Chironomus acerbiphilus larvae (Diptera Chironomidae) were analyzed using carbon and nitrogen stable isotope ratios in Lake Katanuma. Lake Katanuma is a volcanic and strongly acidic lake (average pH 2.2). In Lake Katanuma, potential sources of diets for the chironomid larvae are limited including a benthic diatom (Pinnularia braunii), a phytoplankton (Chlamydomonas acidophila), sulfate oxidizing bacteria, and vascular plants supplied from vegetation surrounding the lake. Based on the average carbon and nitrogen isotope ratios among these potential sources and sediment, benthic diatoms were considered to be most probable food source of the chironomid larvae. {delta}{sup 13}C values of the chironomid were significantly different among seasons and habitat depths, suggesting that diet of C. acerbiphilus changed seasonally and with habitat depth. (author)

Evaluating the Impact of an Accountable Care Organization on Population Health: The Quasi-Experimental Design of the German Gesundes Kinzigtal.

Science.gov (United States)

Pimperl, Alexander; Schulte, Timo; Mühlbacher, Axel; Rosenmöller, Magdalena; Busse, Reinhard; Groene, Oliver; Rodriguez, Hector P; Hildebrandt, Helmut

2017-06-01

A central goal of accountable care organizations (ACOs) is to improve the health of their accountable population. No evidence currently links ACO development to improved population health. A major challenge to establishing the evidence base for the impact of ACOs on population health is the absence of a theoretically grounded, robust, operationally feasible, and meaningful research design. The authors present an evaluation study design, provide an empirical example, and discuss considerations for generating the evidence base for ACO implementation. A quasi-experimental study design using propensity score matching in combination with small-scale exact matching is implemented. Outcome indicators based on claims data were constructed and analyzed. Population health is measured by using a range of mortality indicators: mortality ratio, age at time of death, years of potential life lost/gained, and survival time. The application is assessed using longitudinal data from Gesundes Kinzigtal, one of the leading population-based ACOs in Germany. The proposed matching approach resulted in a balanced control of observable differences between the intervention (ACO) and control groups. The mortality indicators used indicate positive results. For example, 635.6 fewer years of potential life lost (2005.8 vs. 2641.4; t-test: sig. P < 0.05*) in the ACO intervention group (n = 5411) attributable to the ACO, also after controlling for a potential (indirect) immortal time bias by excluding the first half year after enrollment from the outcome measurement. This empirical example of the impact of a German ACO on population health can be extended to the evaluation of ACOs and other integrated delivery models of care.

Kinetic Model of Growth of Arthropoda Populations

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Ershov, Yu. A.; Kuznetsov, M. A.

2018-05-01

Kinetic equations were derived for calculating the growth of crustacean populations ( Crustacea) based on the biological growth model suggested earlier using shrimp ( Caridea) populations as an example. The development cycle of successive stages for populations can be represented in the form of quasi-chemical equations. The kinetic equations that describe the development cycle of crustaceans allow quantitative prediction of the development of populations depending on conditions. In contrast to extrapolation-simulation models, in the developed kinetic model of biological growth the kinetic parameters are the experimental characteristics of population growth. Verification and parametric identification of the developed model on the basis of the experimental data showed agreement with experiment within the error of the measurement technique.

Experimental evolution reveals differences between phenotypic and evolutionary responses to population density.

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McNamara, K B; Simmons, L W

2017-09-01

Group living can select for increased immunity, given the heightened risk of parasite transmission. Yet, it also may select for increased male reproductive investment, given the elevated risk of female multiple mating. Trade-offs between immunity and reproduction are well documented. Phenotypically, population density mediates both reproductive investment and immune function in the Indian meal moth, Plodia interpunctella. However, the evolutionary response of populations to these traits is unknown. We created two replicated populations of P. interpunctella, reared and mated for 14 generations under high or low population densities. These population densities cause plastic responses in immunity and reproduction: at higher numbers, both sexes invest more in one index of immunity [phenoloxidase (PO) activity] and males invest more in sperm. Interestingly, our data revealed divergence in PO and reproduction in a different direction to previously reported phenotypic responses. Males evolving at low population densities transferred more sperm, and both males and females displayed higher PO than individuals at high population densities. These positively correlated responses to selection suggest no apparent evolutionary trade-off between immunity and reproduction. We speculate that the reduced PO activity and sperm investment when evolving under high population density may be due to the reduced population fitness predicted under increased sexual conflict and/or to trade-offs between pre- and post-copulatory traits. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

Evolution of the proportions of two sigma viral types in experimental populations of Drosophila melanogaster in the absence of the allele that is restrictive of viral multiplication.

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Fleuriet, A

1999-12-01

A minority of flies in natural populations of Drosophila melanogaster are endemically infected by a rhabdovirus, sigma. The virus is vertically transmitted through male and female gametes. Two alleles of a fly locus, the ref(2)P locus, are present as a polymorphism in all populations: O permissive, and P restrictive for viral multiplication and transmission. Two viral types are known, Type I, which is very sensitive to the P allele, and Type II, which is more resistant. Previous observations have shown that, in presence of the P allele, viral Type II is selected for, in both natural and experimental populations. The aim of the present study was to determine whether, in the absence of P, Type I is selected for, or whether the two types are equivalent. For this purpose, experimental populations deprived of the P allele and differing in the initial proportions of the two viral types were established. After several generations, and despite a possible bias toward Type I, the frequencies of Type I and Type II clones differed in the various populations, depending on their initial values. These findings do not rule out selective advantage of viral Type I in the absence of P, but suggest that, if any, this advantage is in no way comparable to that displayed by viral Type II in the presence of P.

Cooperation, cheating, and collapse in biological populations

Science.gov (United States)

Gore, Jeff

2014-03-01

Natural populations can collapse suddenly in response to small changes in environmental conditions, and recovery from such a collapse can be difficult. We have used laboratory microbial ecosystems to directly measure theoretically proposed early warning signals of impending population collapse. Yeast cooperatively break down the sugar sucrose, meaning that below a critical size the population cannot sustain itself. We have demonstrated experimentally that changes in the fluctuations of the population size can serve as an early warning signal that the population is close to collapse. The cooperative nature of yeast growth on sucrose suggests that the population may be susceptible to ``cheater'' cells, which do not contribute to the public good and instead merely take advantage of the cooperative cells. We confirm this possibility experimentally and find that such social parasitism decreases the resilience of the population.

Can mouth part deformities of Chironomus riparius serve as indicators for water and sediment pollution? A laboratory approach

Energy Technology Data Exchange (ETDEWEB)

Langer-Jaesrich, Miriam; Koehler, Heinz R. [Animal Physiological Ecology Dept., Univ. of Tuebingen (Germany); Gerhardt, Almut [LimCo International, Ibbenbueren (Germany)

2010-04-15

Purpose: The significance of chironomids mouthpart deformities as suitable indicators for pollutant contamination of natural waters and sediments has been investigated and discussed for several decades. Uncertainties still exist as further laboratory studies, with different pollutants and with the same experimental design are required. Materials and methods In this study, the effects of four substances (i.e., nickel chloride, chlorpyrifos, imidacloprid and thiacloprid) were tested on the mouthpart deformity rates and patterns in Chironomus riparius. These compounds were investigated either individually or in mixtures. Results and discussion No significant increase in the frequency of mouthpart deformities was found using different single substance treatments when compared to the controls. Consequently no concentration-effect relationships between substance concentration and deformity frequency were detected. In mixture experiments an increase in mouthpart deformities of C. riparius exposed to imidacloprid-thiacloprid mixtures was detected. This indicated that the effects of single substances and mixtures on mouthpart deformity frequency may differ considerably. Conclusions The findings in this study from different laboratory approaches in combination with the published literature questions the reliability of chironomids mouthpart deformities as indicators of freshwater and sediment contamination by toxic substances. (orig.)

Why on the snow? Winter emergence strategies of snow-active Chironomidae (Diptera) in Poland.

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Soszyńska-Maj, Agnieszka; Paasivirta, Lauri; Giłka, Wojciech

2016-10-01

A long-term study of adult non-biting midges (Chironomidae) active in winter on the snow in mountain areas and lowlands in Poland yielded 35 species. The lowland and mountain communities differed significantly in their specific composition. The mountain assemblage was found to be more diverse and abundant, with a substantial contribution from the subfamily Diamesinae, whereas Orthocladiinae predominated in the lowlands. Orthocladius wetterensis Brundin was the most characteristic and superdominant species in the winter-active chironomid communities in both areas. Only a few specimens and species of snow-active chironomids were recorded in late autumn and early winter. The abundance of chironomids peaked in late February in the mountain and lowland areas with an additional peak in the mountain areas in early April. However, this second peak of activity consisted mainly of Orthocladiinae, as Diamesinae emerged earliest in the season. Most snow-active species emerged in mid- and late winter, but their seasonal patterns differed between the 2 regions as a result of the different species composition and the duration of snow cover in these regions. Spearman's rank correlation coefficient tests yielded positive results between each season and the number of chironomid individuals recorded in the mountain area. A positive correlation between air temperature, rising to +3.5 °C, and the number of specimens recorded on the snow in the mountain community was statistically significant. The winter emergence and mate-searching strategies of chironomids are discussed in the light of global warming, and a brief compilation of most important published data on the phenomena studied is provided. © 2015 Institute of Zoology, Chinese Academy of Sciences.

On the bioavailability of trace metals in surface sediments: a combined geochemical and biological approach.

Science.gov (United States)

Roosa, Stéphanie; Prygiel, Emilie; Lesven, Ludovic; Wattiez, Ruddy; Gillan, David; Ferrari, Benoît J D; Criquet, Justine; Billon, Gabriel

2016-06-01

The bioavailability of metals was estimated in three river sediments (Sensée, Scarpe, and Deûle Rivers) impacted by different levels of Cu, Cd, Pb, and Zn (Northern France). For that, a combination of geochemistry and biological responses (bacteria and chironomids) was used. The results obtained illustrate the complexity of the notion of "bioavailability." Indeed, geochemical indexes suggested a low toxicity, even in surface sediments with high concentrations of total metals and a predicted severe effect levels for the organisms. This was also suggested by the abundance of total bacteria as determined by DAPI counts, with high bacterial cell numbers even in contaminated areas. However, a fraction of metals may be bioavailable as it was shown for chironomid larvae which were able to accumulate an important quantity of metals in surface sediments within just a few days.We concluded that (1) the best approach to estimate bioavailability in the selected sediments is a combination of geochemical and biological approaches and that (2) the sediments in the Deûle and Scarpe Rivers are highly contaminated and may impact bacterial populations but also benthic invertebrates.

78 FR 35719 - Endangered and Threatened Wildlife and Plants; Proposed Revision To the Nonessential Experimental...

Science.gov (United States)

2013-06-13

... governing the Mexican wolf nonessential experimental population designation. Background Our approach in this... private activities within or adjacent to the experimental population area. Furthermore, as set forth in 50...; Proposed Revision To the Nonessential Experimental Population of the Mexican Wolf AGENCY: Fish and Wildlife...

Non-linear feeding functional responses in the Greater Flamingo (Phoenicopterus roseus) predict immediate negative impact of wetland degradation on this flagship species

Science.gov (United States)

Deville, Anne-Sophie; Grémillet, David; Gauthier-Clerc, Michel; Guillemain, Matthieu; Von Houwald, Friederike; Gardelli, Bruno; Béchet, Arnaud

2013-01-01

Accurate knowledge of the functional response of predators to prey density is essential for understanding food web dynamics, to parameterize mechanistic models of animal responses to environmental change, and for designing appropriate conservation measures. Greater flamingos (Phoenicopterus roseus), a flagship species of Mediterranean wetlands, primarily feed on Artemias (Artemia spp.) in commercial salt pans, an industry which may collapse for economic reasons. Flamingos also feed on alternative prey such as Chironomid larvae (e.g., Chironomid spp.) and rice seeds (Oryza sativa). However, the profitability of these food items for flamingos remains unknown. We determined the functional responses of flamingos feeding on Artemias, Chironomids, or rice. Experiments were conducted on 11 captive flamingos. For each food item, we offered different ranges of food densities, up to 13 times natural abundance. Video footage allowed estimating intake rates. Contrary to theoretical predictions for filter feeders, intake rates did not increase linearly with increasing food density (type I). Intake rates rather increased asymptotically with increasing food density (type II) or followed a sigmoid shape (type III). Hence, flamingos were not able to ingest food in direct proportion to their abundance, possibly because of unique bill structure resulting in limited filtering capabilities. Overall, flamingos foraged more efficiently on Artemias. When feeding on Chironomids, birds had lower instantaneous rates of food discovery and required more time to extract food from the sediment and ingest it, than when filtering Artemias from the water column. However, feeding on rice was energetically more profitable for flamingos than feeding on Artemias or Chironomids, explaining their attraction for rice fields. Crucially, we found that food densities required for flamingos to reach asymptotic intake rates are rarely met under natural conditions. This allows us to predict an immediate

Holocene coastal paleoenvironmental record, Bay of Brest

Science.gov (United States)

Fernane, Assia; Gandouin, Emmanuel; Goslin, Jérôme; Penaud, Aurélie; Van Vliet lanoë, Brigitte

2013-04-01

Coastal areas are sensitive environments regarding the risk of submersion and the impact on biodiversity induced by salinity changes. These areas thus provide good palaeocecological archives to monitor palaeo sea level changes and the associated adaptation of different biological communities. The north-western coast of France has poorly been investigated regarding its Holocene palaeoecological signatures (Morzadec-Kerfourn, 1974; Naughton et al., 2007). Chironomids have been recognized to be an efficient tool for palaeoclimate and palaeosalinity reconstructions in lakes (Brooks, 2006), and more recently in river floodplains (Gandouin et al, 2006). In this study, environmental changes related to both climate processes and human disturbances, were reconstructed over the last 5000 years, based on pollen and chironomid assemblages from two coastal cores retrieved at Pors Milin (Brittany, NW France). The sedimentary sequences consist of terrestrial peaty layers interdigited with marine clastic deposits. The study area is composed by a sandy beach, truncating the peat, limited by a high sandy bar, and a back marsh developed at + 4 m NGF. Pollen and chironomid results reveal that anthropogenic factors would mainly control environmental changes that occurred in this sector. The disappearance of many chironomid taxa (inhabitants of main river channel) and the dramatic fall in diversity may have been induced by the development of the Merovingian forest clearance at Pors Milin. Indeed, we suggest that the development of agriculture, the river embankment and the draining of wetlands may explain the chironomid habitat loss and the subsequent fall of biodiversity. This change in faunal assemblages occurred synchronously with a decrease in the "arborean / non arborean" pollen ratio reflecting the land opening of the watershed. Several nitrophilous and anthropogenic pollen taxa reinforce our hypothesis concerning the development of agricultural and livestock farming activities at

Decline in Mycobacterium bovis and Brucella abortus populations during the maturation of experimentally contaminated parmesan-type cheese

Directory of Open Access Journals (Sweden)

Karina Ramirez Starikoff

2016-11-01

Full Text Available Brazilian legislation allows the manufacture of raw milk cheese with a maturation exceeding 60 days at room temperature above 5°C, but there is a lack of solid scientific evidence on the efficacy of this maturation process in inactivating important pathogens that may be present in milk, such as Mycobacterium bovis and Brucella abortus. Thus, the objectives of this study were to produce parmesan-type cheese experimentally contaminated with M. bovis and B. abortus and evaluate the survival of these pathogens along 2-month maturation. Parmesan-type cheese was manufactured in the laboratory using whole pasteurized milk with or without inoculation with M. bovis (SB1033 or B. abortus (1119-3 and matured at 18°C for up to 63 days. M. bovis was inoculated in Stonebrink-Leslie medium supplemented with antibiotics and incubated at 37°C for 45 days, and B. abortus was incubated in Farrel medium at 36°C for 3 days. The average D18°C value, weighted by variance, was 37.5 ± 5.3 days for M. bovis and 5.9 ± 0.7 days for B. abortus. The average physicochemical parameters in the cheese at the end of the study were as follows: pH = 4.89, water activity = 0.976, and moisture percentage = 43.1%. The pH might have contributed to the reduction in the population of B. abortus but seems not to have influenced the population of M. bovis. We conclude that the duration of the maturation process influences the size of the surviving populations of M. bovis and B. abortus, and that the shortening of the maturation duration might not ensure a decline in pathogen levels to safe levels. Thus, complementary studies considering the effect of several other technological aspects on the survival of these pathogens are required, including the effect of the lactic acid bacterial population, salt content, and temperature of maturation.

Use of Chironomidae (Diptera) Surface-Floating Pupal Exuviae as a Rapid Bioassessment Protocol for Water Bodies.

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Kranzfelder, Petra; Anderson, Alyssa M; Egan, Alexander T; Mazack, Jane E; Bouchard, R William; Rufer, Moriya M; Ferrington, Leonard C

2015-07-24

Rapid bioassessment protocols using benthic macroinvertebrate assemblages have been successfully used to assess human impacts on water quality. Unfortunately, traditional benthic larval sampling methods, such as the dip-net, can be time-consuming and expensive. An alternative protocol involves collection of Chironomidae surface-floating pupal exuviae (SFPE). Chironomidae is a species-rich family of flies (Diptera) whose immature stages typically occur in aquatic habitats. Adult chironomids emerge from the water, leaving their pupal skins, or exuviae, floating on the water's surface. Exuviae often accumulate along banks or behind obstructions by action of the wind or water current, where they can be collected to assess chironomid diversity and richness. Chironomids can be used as important biological indicators, since some species are more tolerant to pollution than others. Therefore, the relative abundance and species composition of collected SFPE reflect changes in water quality. Here, methods associated with field collection, laboratory processing, slide mounting, and identification of chironomid SFPE are described in detail. Advantages of the SFPE method include minimal disturbance at a sampling area, efficient and economical sample collection and laboratory processing, ease of identification, applicability in nearly all aquatic environments, and a potentially more sensitive measure of ecosystem stress. Limitations include the inability to determine larval microhabitat use and inability to identify pupal exuviae to species if they have not been associated with adult males.

Functional and structural rearrangements of salivary gland polytene chromosomes of Chironomus riparius Mg. (Diptera,Chironomidae) in response to freshly neutralized aluminium

Energy Technology Data Exchange (ETDEWEB)

Michailova, P.; Ilkova, J.; White, K.N

2003-05-01

Aluminium impacts on aquatic biota can be detected using polytene chromosomes as bio-markers - Although recent work has shown that environmentally relevant concentrations of freshly neutralized aluminium (AI) are bioavailable and toxic to freshwater invertebrates, the genotoxicity of Al has not been examined. Here we show that freshly neutralized Al affects structure and function of the salivary gland polytene chromosomes of the ubiquitous chironomid larva Chironomus riparius over three generations. Exposure to 500 {mu}g l{sup -1} added Al for 24-25 days resulted in a significantly higher frequency of numerous somatic aberrations, while no structural aberrations were found in F1 controls and few in the second and third generation. Aberrations also included deletions of sections of chromosome G of C. riparius larvae as well as deletions of one or more Balbiani rings. Changes in functional activity included decreased activity of the Balbiani rings (BR), and an increase in the number of decondensed centromeres. The activity of the nucleolar organizer (NOR) significantly decreased in F1 chironomids exposed to Al, while in the F2 and F3 generations the NOR showed normal (high) activity. First generation chironomids were generally more susceptible to Al although no clear evidence of tolerance was apparent over three generations. The possible use of alterations in chironomid polytene chromosomes as biomarkers of trace metal pollution is discussed.

Functional and structural rearrangements of salivary gland polytene chromosomes of Chironomus riparius Mg. (Diptera,Chironomidae) in response to freshly neutralized aluminium

International Nuclear Information System (INIS)

Michailova, P.; Ilkova, J.; White, K.N.

2003-01-01

Aluminium impacts on aquatic biota can be detected using polytene chromosomes as bio-markers - Although recent work has shown that environmentally relevant concentrations of freshly neutralized aluminium (AI) are bioavailable and toxic to freshwater invertebrates, the genotoxicity of Al has not been examined. Here we show that freshly neutralized Al affects structure and function of the salivary gland polytene chromosomes of the ubiquitous chironomid larva Chironomus riparius over three generations. Exposure to 500 μg l -1 added Al for 24-25 days resulted in a significantly higher frequency of numerous somatic aberrations, while no structural aberrations were found in F1 controls and few in the second and third generation. Aberrations also included deletions of sections of chromosome G of C. riparius larvae as well as deletions of one or more Balbiani rings. Changes in functional activity included decreased activity of the Balbiani rings (BR), and an increase in the number of decondensed centromeres. The activity of the nucleolar organizer (NOR) significantly decreased in F1 chironomids exposed to Al, while in the F2 and F3 generations the NOR showed normal (high) activity. First generation chironomids were generally more susceptible to Al although no clear evidence of tolerance was apparent over three generations. The possible use of alterations in chironomid polytene chromosomes as biomarkers of trace metal pollution is discussed

Cooperation, cheating, and collapse in microbial populations

Science.gov (United States)

Gore, Jeff

2012-02-01

Natural populations can suffer catastrophic collapse in response to small changes in environmental conditions, and recovery after such a collapse can be exceedingly difficult. We have used laboratory yeast populations to study proposed early warning signals of impending extinction. Yeast cooperatively breakdown the sugar sucrose, meaning that there is a minimum number of cells required to sustain the population. We have demonstrated experimentally that the fluctuations in the population size increase in magnitude and become slower as the population approaches collapse. The cooperative nature of yeast growth on sucrose suggests that the population may be susceptible to cheater cells, which do not contribute to the public good and instead merely take advantage of the cooperative cells. We have confirmed this possibility experimentally by using a cheater yeast strain that lacks the gene encoding the cooperative behavior [1]. However, recent results in the lab demonstrate that the presence of a bacterial competitor may drive cooperation within the yeast population.[4pt] [1] Gore et al, Nature 459, 253 -- 256 (2009)

Experimental evolution under hyper-promiscuity in Drosophila melanogaster.

Science.gov (United States)

Perry, Jennifer C; Joag, Richa; Hosken, David J; Wedell, Nina; Radwan, Jacek; Wigby, Stuart

2016-06-16

The number of partners that individuals mate with over their lifetime is a defining feature of mating systems, and variation in mate number is thought to be a major driver of sexual evolution. Although previous research has investigated the evolutionary consequences of reductions in the number of mates, we know little about the costs and benefits of increased numbers of mates. Here, we use a genetic manipulation of mating frequency in Drosophila melanogaster to create a novel, highly promiscuous mating system. We generated D. melanogaster populations in which flies were deficient for the sex peptide receptor (SPR) gene - resulting in SPR- females that mated more frequently - and genetically-matched control populations, and allowed them to evolve for 55 generations. At several time-points during this experimental evolution, we assayed behavioural, morphological and transcriptional reproductive phenotypes expected to evolve in response to increased population mating frequencies. We found that males from the high mating frequency SPR- populations evolved decreased ability to inhibit the receptivity of their mates and decreased copulation duration, in line with predictions of decreased per-mating investment with increased sperm competition. Unexpectedly, SPR- population males also evolved weakly increased sex peptide (SP) gene expression. Males from SPR- populations initially (i.e., before experimental evolution) exhibited more frequent courtship and faster time until mating relative to controls, but over evolutionary time these differences diminished or reversed. In response to experimentally increased mating frequency, SPR- males evolved behavioural responses consistent with decreased male post-copulatory investment at each mating and decreased overall pre-copulatory performance. The trend towards increased SP gene expression might plausibly relate to functional differences in the two domains of the SP protein. Our study highlights the utility of genetic

Investigations of the fate of radiation-induced mutations in dependence of selection and recombination with recessive gene marks in experimental populations of Drosophila melanogaster

International Nuclear Information System (INIS)

Pfriem, P.

1978-01-01

Three dichromosomal experimental populations of Drosophila melanogaster were started with heterozygons dp b/+ +- animals with identical dp b- and + +- II-chromosomes for all three populations. The male ++/++- parents had been exposed to 9000 r prior to the experiments. In 7 random samples of the first 15 generations of the experiment, the incidence of the mutant alleles dp and b, the exchange inequilibrium between the alleles of the two labelled loci, and the letthal factor frequency were investigatet. It was found that - The b allele had an equilibrium frequency of about 57% in all populations, while the frequency of the dp allele decreased to about 10% within the first 15 generations. - The association values a as measures of an exchange inequilibrium showed a fast development towards exchange inequilibrium within these 15 generations for the three populations. - The incidence of lethal factors remained constant throughout the generations for the tested type ++ and + b chromosomes, in irradiated ++- chromosomes, it was higher on an average than in the + b- chromosomes. The total lethal factor incidence was about 30%. - The alleling rate of lethal factors and the viability values of several distinguishable genotypes indicated individualities of the three populations in spite of their identical behaviour. In two of the three populations, the near-constant incidence of lethal factors was supposed to be due to a small number of lethal which accurred with high frequency. (orig.) [de

Diet of the eastern mudminnow (Umbra pygmaea DeKay) from two geographically distinct populations within the North American native range

Science.gov (United States)

Panek, Frank M.; Weis, Judith S.

2013-01-01

Umbra pygmaea (Eastern Mudminnow) is a freshwater species common in Atlantic slope coastal lowlands from southern New York to northern Florida and is typical of slow-moving, mud-bottomed, and highly vegetated streams, swamps, and small ponds. We examined its seasonal food habits at the Great Swamp National Wildlife Refuge (NWR), NJ and at the Croatan National Forest, NC. A total of 147 Eastern Mudminnow from 35–112 mm TL and 190 Eastern Mudminnow from 22–89 mm TL were examined from these sites, respectively. At both locations, we found it to be a bottom-feeding generalist that consumes cladocerans, ostracods, chironomid larvae, coleopteran larvae, and other insects and crustaceans. Ostracods were most common in the diet at the Great Swamp NWR and occurred in 62% ± 2.5% of the stomachs with food. At Croatan National Forest, chironomid larvae were most common and occurred in 66.7% ± 15.8% of the stomachs. There were no statistically significant differences in diet composition between the sites during the winter, summer, and fall. However, when compared on an annual basis, Jaccard’s Index (θJ = 0.636, P = 0.05) suggested that the diet at the two study sites was significantly different. While we identified the same major food groups at both locations, the utilization of these food groups varied seasonally. Detritus was a major stomach content at both locations throughout the year. We also documented cannibalism during the summer season at both locations. The seasonal diet of the Eastern Mudminnow was similar to that of Umbra limi (Central Mudminnow) and Umbra krameri (European Mudminnow). Our findings here are the first quantitative examinations of seasonal differences in the diet of the Eastern Mudminnow within its native North American range.

Experimental evolution and the dynamics of genomic mutation rate modifiers.

Science.gov (United States)

Raynes, Y; Sniegowski, P D

2014-11-01

Because genes that affect mutation rates are themselves subject to mutation, mutation rates can be influenced by natural selection and other evolutionary forces. The population genetics of mutation rate modifier alleles has been a subject of theoretical interest for many decades. Here, we review experimental contributions to our understanding of mutation rate modifier dynamics. Numerous evolution experiments have shown that mutator alleles (modifiers that elevate the genomic mutation rate) can readily rise to high frequencies via genetic hitchhiking in non-recombining microbial populations. Whereas these results certainly provide an explanatory framework for observations of sporadically high mutation rates in pathogenic microbes and in cancer lineages, it is nonetheless true that most natural populations have very low mutation rates. This raises the interesting question of how mutator hitchhiking is suppressed or its phenotypic effect reversed in natural populations. Very little experimental work has addressed this question; with this in mind, we identify some promising areas for future experimental investigation.

The use of annual killifish in the biocontrol of the aquatic stages of mosquitoes in temporary bodies of fresh water; a potential new tool in vector control

Directory of Open Access Journals (Sweden)

Adrias Araceli Q

2010-05-01

Full Text Available Abstract Background Mosquitoes that breed in temporary pools in remote areas that dry up seasonally are especially difficult to control through chemical or biological means. The annual killifish has been suggested as a means of eradicating the aquatic stages of mosquitoes in transient pools because they can maintain permanent populations in such habitats by undergoing suspended animation or diapause during the embryonic stages to survive periodic drought. However, very little is known about the predatory activity of annual killifish and their usefulness in mosquito control. Results The annual killifish, Nothobranchius guentheri, native to Tanzania, was used in this investigation. Food preference was tested under laboratory conditions by feeding juvenile killifish with 2nd instar mosquito larvae of Culex quinquefasciatus in the presence of alternative food sources, such as rotifers and chironomid larvae. Semi-field tests were conducted by introduction of hibernating killifish embryos and juvenile fish to artificial ponds in an outdoor open environment that allowed natural oviposition of Cx. quinquefasciatus. Food preference studies show that N. guentheri preferred to prey on mosquito larvae than either chironomid or rotifers. When hibernating killifish embryos were added to ponds simultaneously with the addition of freshwater, the embryos hatched and fed on mosquito larval population resulting in complete elimination of the immature stages. The introduction of juvenile fish to ponds with high density of mosquito larvae resulted in total eradication of the mosquito population due to predation by fish. Complete biocontrol of the mosquito larval population was achieved in the presence of 3 fish per m2 of pond surface area. Conclusions The annual killifish provides yet another tool that may be employed in the eradication diseases carried by mosquitoes through vector control, particularly in temporary bodies of freshwater. The fish can be conveniently

The importance of excretion by Chironomus larvae on the internal loads of nitrogen and phosphorus in a small eutrophic urban reservoir

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R. Henry

Full Text Available Measurements of ammonium and phosphate excretion by the Chironomus larvae were conducted in order to evaluate the importance of these chironomids for the internal loads of a small eutrophic urban reservoir. Ammonium and phosphate excretion rates by Chironomus larvae of small size (6-10 mm total length were significantly higher than those of the Chironomids having medium (9-11 mm and large (11-16 mm sizes. A dependence in relation to temperature was recorded for the ammonium and phosphate excretions that was significantly higher at 25 °C than at 20 and 15 °C. Through a linear relation between biomass (dry weight and total length and, between excretion and biomass and, data on chironomids densities, after an intense sampling in 33 sites distributed all along the reservoir bottom, the mean phosphate and ammonium excretion rates corresponded to 2,014 ± 5,134 µg.m-2/day and 1,643 ± 3,974 µg.m-2/day, respectively. Considering the mean biomass (34 mg.m-2 of Chironomus, the lake area (88,156 m² and the mean excretion rates, the contribution of benthic chironomids to the internal loads would be 181 KgP and 147 KgN. for the sampling months (October-November 1998. These values showed that the internal loads by excretion from Chironomus larvae correspond to approximately 33% of the external loads of phosphorus in the lake and, in the case of nitrogen, to only 5%.

Experimental and simulated beam-foil decay curves for some transitions in Zn II

International Nuclear Information System (INIS)

Hultberg, S.; Liljeby, L.; Mannervik, S.; Veje, E.; Lindgaard, A.

1980-01-01

Experimental beam-foil decay curves for the 4s-4p, 4p-4d, 4d-4f, and the 4p-5s transitions in Zn II are compared to decay curves synthesized from transition probabilities calculated in the numerical Coulomb approximation and either measured initial level populations or population models. Good agreement exists between experimental curves and those based on the measured initial level populations for the 5s, 4d, and 4f levels while certain deviations are noted for the 4p term. None of the applied population models reproduce all experimental curves satisfyingly well. In addition, lifetimes are determined experimentally for 7 terms in Zn II, and good agreement with the numerical Coulomb approximation lifetimes is generally found except for some p terms. Beam-foil excitation-mechanism results for zinc are presented and compared to previous results from light projectiles. (Auth.)

The role of benthic macrofauna on nitrogen cycling in eutrophic lake sediment

Energy Technology Data Exchange (ETDEWEB)

Svensson, J M

1998-12-01

This thesis concerns the role of sediment-living macrobenthos in the cycling of nitrogen species and nitrogen transformation in eutrophic freshwater sediments. In my thesis I have, employing {sup 15}N-isotope techniques in laboratory experiments, shown the importance of infaunal chironomid larvae and oligochaetes on denitrification in eutrophic lake sediments. Investigated benthic organisms not only expand the sediment surface with their permanent or non-permanent burrow constructions, they also transport water through the burrows continuously. This behaviour of intermittent water-pumping activity, provides the burrows with oxygen, and in addition, mediates the supply of nitrate to denitrifying zones. The highly dynamic oxygen climate within and narrow oxic zones around burrows, due to their radial geometry, provides a very short diffusion path for nitrate into surrounding anoxic zones. In my studies rates of denitrification were enhanced c. 3 to 6-fold by the influence of chironomids (Chironomus plumosus) and c. 2-fold by the influence of oligochaetes at comparable biomass. The difference in degree of stimulation is explained by species-specific habitat exploitation which could also be observed between different tube-dwelling species of chironomids. Besides chironomid biomass, the degree of enhancement of denitrification by chironomids was dependent on nitrate concentration in the overlying water, and water temperature. Nitrification was also seen to be stimulated by the infaunal macrobenthos but to a lesser degree than denitrification. It is suggested that bioturbated eutrophic sediment, under predominantly oxic bottom water conditions may act more pronouncedly as a sink for inorganic nitrogen relative to non-bioturbated sediment, and that bioturbated sediment above all, may be an important factor contributing to lowered transport of nitrogen to the coast. In order to sustain high nitrogen removal capacity in wetlands, ponds and lakes, it is further suggested

Fossil Chironomidae (Insecta: Diptera) as Paleothermometers in the African Tropics

Science.gov (United States)

Eggermont, H.; Heiri, O.; Russell, J.; Vuille, M.; Audenaert, L.; Klaassen, G.; Verschuren, D.

2008-12-01

Reconstruction of Africa's temperature history from natural climate archives such as lake sediments is essential to amend the current scarcity of information on natural tropical climate and ecosystem variability. Chironomids are well-established paleothermometers in north-temperate/boreal regions, but their potential in tropical lakes has never before been assessed. We surveyed sub-fossil chironomid assemblages in surface sediments from 65 lakes and permanent pools in southwestern Uganda and central/southern Kenya, spanning elevations between 489 and 4575 m asl. Using various subsets of lakes and corresponding Surface-Water Temperatures (SWTemp) and Mean Annual Air Temperatures (MATemp), we developed a series of inference models for quantitative paleotemperature reconstruction. Models using both low-, mid- and high-elevation sites suffer to some extent from the small number of samples between 2500 and 3500 m asl, and from the presence of ecologically distinct but morphologically indistinguishable taxa. Models confined to mountain sites produce poorer error statistics, but are less prone to the biogeographical and taxonomic complexities associated with long climatic gradients. Overall, error statistics compare favourably with those of inference models developed for temperate regions, indicating that fossil assemblages of African Chironomidae can be valuable indicators of past temperature change. We subsequently used these models to evaluate whether high-elevation lakes in the Rwenzori Mountains (>3000 m asl) have been impacted by climate warming in recent centuries by comparing temperatures inferred from chironomid assemblages in modern sediments with those derived from chironomid assemblages in sediments deposited within or briefly after the Little Ice Age (1270-1850 AD). Depending on the model used, between 44 and 63% of the 16 lakes studied indicate significantly warmer temperatures in recent times (corresponding with an average MATemp rise of 0.88 ° C, and

Distribution of polychlorinated biphenyls in an urban riparian zone affected by wastewater treatment plant effluent and the transfer to terrestrial compartment by invertebrates

Energy Technology Data Exchange (ETDEWEB)

Yu, Junchao [State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085 (China); Environment Research Institute, Shandong University, Jinan, 250100 (China); Wang, Thanh, E-mail: bswang@rcees.ac.cn [State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085 (China); Han, Shanlong [Environment Research Institute, Shandong University, Jinan, 250100 (China); Wang, Pu; Zhang, Qinghua; Jiang, Guibin [State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085 (China)

2013-10-01

In this study, we investigated the distribution of polychlorinated biphenyls (PCBs) in a riparian zone affected by the effluent from a wastewater treatment plant (WWTP). River water, sediment, aquatic invertebrates and samples from the surrounding terrestrial compartment such as soil, reed plants and several land based invertebrates were collected. A relatively narrow range of δ{sup 13}C values was found among most invertebrates (except butterflies, grasshoppers), indicating a similar energy source. The highest concentration of total PCBs was observed in zooplankton (151.1 ng/g lipid weight), and soil dwelling invertebrates showed higher concentrations than phytophagous insects at the riparian zone. The endobenthic oligochaete Tubifex tubifex (54.28 ng/g lw) might be a useful bioindicator of WWTP derived PCBs contamination. High bioaccumulation factors (BAFs) were observed in collected aquatic invertebrates, although the biota-sediment/soil accumulation factors (BSAF) remained relatively low. Emerging aquatic insects such as chironomids could carry waterborne PCBs to the terrestrial compartment via their lifecycles. The estimated annual flux of PCBs for chironomids ranged from 0.66 to 265 ng⋅m{sup −2}⋅y{sup −1}. Although a high prevalence of PCB-11 and PCB-28 was found for most aquatic based samples in this riparian zone, the mid-chlorinated congeners (e.g. PCB-153 and PCB-138) became predominant among chironomids and dragonflies as well as soil dwelling invertebrates, which might suggest a selective biodriven transfer of different PCB congeners. Highlights: • The distribution of PCBs in an urban riparian zone around a wastewater effluent affected river was investigated. • Relatively high abundances of PCB-11 and PCB-28 were found for most samples. • Mid-chlorinated congeners (PCB-153 and PCB-138) were more accumulated in chironomids and dragonflies as well as soil dwelling invertebrates. • Emerging invertebrates can carry waterborne PCBs to the

Distribution of polychlorinated biphenyls in an urban riparian zone affected by wastewater treatment plant effluent and the transfer to terrestrial compartment by invertebrates

International Nuclear Information System (INIS)

Yu, Junchao; Wang, Thanh; Han, Shanlong; Wang, Pu; Zhang, Qinghua; Jiang, Guibin

2013-01-01

In this study, we investigated the distribution of polychlorinated biphenyls (PCBs) in a riparian zone affected by the effluent from a wastewater treatment plant (WWTP). River water, sediment, aquatic invertebrates and samples from the surrounding terrestrial compartment such as soil, reed plants and several land based invertebrates were collected. A relatively narrow range of δ 13 C values was found among most invertebrates (except butterflies, grasshoppers), indicating a similar energy source. The highest concentration of total PCBs was observed in zooplankton (151.1 ng/g lipid weight), and soil dwelling invertebrates showed higher concentrations than phytophagous insects at the riparian zone. The endobenthic oligochaete Tubifex tubifex (54.28 ng/g lw) might be a useful bioindicator of WWTP derived PCBs contamination. High bioaccumulation factors (BAFs) were observed in collected aquatic invertebrates, although the biota-sediment/soil accumulation factors (BSAF) remained relatively low. Emerging aquatic insects such as chironomids could carry waterborne PCBs to the terrestrial compartment via their lifecycles. The estimated annual flux of PCBs for chironomids ranged from 0.66 to 265 ng⋅m −2 ⋅y −1 . Although a high prevalence of PCB-11 and PCB-28 was found for most aquatic based samples in this riparian zone, the mid-chlorinated congeners (e.g. PCB-153 and PCB-138) became predominant among chironomids and dragonflies as well as soil dwelling invertebrates, which might suggest a selective biodriven transfer of different PCB congeners. Highlights: • The distribution of PCBs in an urban riparian zone around a wastewater effluent affected river was investigated. • Relatively high abundances of PCB-11 and PCB-28 were found for most samples. • Mid-chlorinated congeners (PCB-153 and PCB-138) were more accumulated in chironomids and dragonflies as well as soil dwelling invertebrates. • Emerging invertebrates can carry waterborne PCBs to the terrestrial

Effect of substrate on periphyton communities and relationships among food web components in shallow hypertrophic lake

Directory of Open Access Journals (Sweden)

Tomasz Mieczan

2012-07-01

Full Text Available We studied the role of natural (common reed and artificial substrata (bamboo in structuring the abundance and taxonomic composition of periphyton assemblages. Investigations were conducted in a shallow, hypertrophic lake situated in the area of Polesie Lubelskie (Eastern Poland. Periphyton communities (algae, ciliates, small metazoa and chironomids on both types of substratum were sampled monthly, from May to November of 2007. Water samples for chemical analysis were collected together with biological samples. We selected the group of ten environmental variables which are the most important in determining the habitat conditions in highly eutrophic lakes: temperature, Secchi disc visibility, conductivity, dissolved oxygen, periphytic chlorophyll-a, N-NO3, N-NH4, TP, P-PO4 and total organic carbon (TOC. The abundances of periphytic algae, ciliates, metazoa and chironomids were significantly affected by season and substrate. On natural substrata, in all studied months, periphyton communities showed higher abundances. The results of PCA analysis confirmed the distinction between periphyton communities on natural and artificial substrata. The Monte Carlo permutation test showed that the periphyton communities on common reed were the most significantly affected by temperature, N-NO3, Secchi disc visibility and TOC. The communities on artificial substrata were significantly influenced by temperature, P-PO4 and TOC. On natural substrata biomass of periphytic algae was significantly negatively correlated with abundances of all groups of potential grazers (ciliates, metazoa, chironomids. On artificial substrata the relations between components of periphytic food web were stronger; correlation coefficients between algae, protists and chironomids were significant at P<0.01. The results of analysis indicate that periphytic algae can play an important role as food source for higher trophic levels. These interactions are less significant on natural (reed

Experimental evidence of 'floaters' in two isolated populations of an ...

African Journals Online (AJOL)

Using a combination of radio telemetry, dawn calls, visual observations and targetted playbacks in one 16ha plot per fragment, 52 individuals of different territorial status were identified. Ngangao hosted 14 resident and 13 floating males, while Chawia hosted eight residents and two floaters. Population Chawia (but not ...

Chronic irradiation as an ecological factor affecting genetic population structure

International Nuclear Information System (INIS)

Kal'chenko, V.A.; Kalabushkin, B.A.; Rubanovich, A.V.

1991-01-01

Genetic structure of two Centaurea scabiosa L. populations was studied by frequency distribution of leucine aminopeptidase (LAP) locus genotypes. The experimental population has been growing under conditions of chronic irradiation, with the dose per generation amounting to 1.2 to 25.5 Gy. In it, mutational variants are observed with a frequency of 5.4.10(-3)-4.5.10(-2) per generation (as compared to control population frequency at 5.4.10(-4)). Indexes for heterozygosity, mean number of genotypes, and effective number of alleles were higher in the experimental population. Segregation analysis revealed no differences in viability in the control population, and all genotypic combinations were found to be nearly neutral. In the experimental population, however, significant differences in relative viability of the genotypes were disclosed. The relative viability of heterozygotes for mutant allele C' was nearly maximum, while heterozygotes for other mutant alleles showed minimum viability. We reach the conclusion that the differences in genetic structure of the populations under investigation can be explained by the chronic irradiation factor that brought out differences in adaptability of both normal and mutant genotypes. The suggestion is that intra-locus interactions of the C' allele with normal alleles determine plant resistance to a wide range of unfavorable environmental conditions

Emergence of cytotoxic resistance in cancer cell populations: Single-cell mechanisms and population-level consequences

International Nuclear Information System (INIS)

Lorenzi, Tommaso; Chisholm, Rebecca H.; Lorz, Alexander; Neves de Almeida, Luís; Clairambault, Jean; Larsen, Annette K.; Escargueil, Alexandre

2016-01-01

We formulate an individual-based model and a population model of phenotypic evolution, under cytotoxic drugs, in a cancer cell population structured by the expression levels of survival-potential and proliferation-potential. We apply these models to a recently studied experimental system. Our results suggest that mechanisms based on fundamental laws of biology can reversibly push an actively-proliferating, and drug-sensitive, cell population to transition into a weakly-proliferative and drug-tolerant state, which will eventually facilitate the emergence of more potent, proliferating and drug-tolerant cells.

Emergence of cytotoxic resistance in cancer cell populations: Single-cell mechanisms and population-level consequences

Energy Technology Data Exchange (ETDEWEB)

Lorenzi, Tommaso [Centre de Mathématiques et de Leurs Applications, ENS Cachan, CNRS, Cachan 94230 Cedex, France & INRIA-Paris-Rocquencourt, MAMBA Team, Domaine de Voluceau, BP105, 78153 Le Chesnay Cedex (France); Chisholm, Rebecca H. [School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney NSW 2052 (Australia); Lorz, Alexander; Neves de Almeida, Luís; Clairambault, Jean [Sorbonne Universités, UPMC Univ Paris 06, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); CNRS, UMR 7598, Laboratoire Jacques-Louis Lions, F-75005, Paris (France); INRIA-Paris-Rocquencourt, MAMBA Team, Domaine de Voluceau, BP105, 78153 Le Chesnay Cedex (France); Larsen, Annette K.; Escargueil, Alexandre [Sorbonne Universités, UPMC Univ Paris 06, F-75005, Paris (France); INSERM, UMR-S 938, Laboratory of “Cancer Biology and Therapeutics”, F-75012, Paris (France)

2016-06-08

We formulate an individual-based model and a population model of phenotypic evolution, under cytotoxic drugs, in a cancer cell population structured by the expression levels of survival-potential and proliferation-potential. We apply these models to a recently studied experimental system. Our results suggest that mechanisms based on fundamental laws of biology can reversibly push an actively-proliferating, and drug-sensitive, cell population to transition into a weakly-proliferative and drug-tolerant state, which will eventually facilitate the emergence of more potent, proliferating and drug-tolerant cells.

Effects of cadmium on life-cycle parameters in a multi-generation study with Chironomus riparius following a pre-exposure of populations to two different tributyltin concentrations for several generations.

Science.gov (United States)

Vogt, Christian; Hess, Maren; Nowak, Carsten; Diogo, João Barateiro; Oehlmann, Jörg; Oetken, Matthias

2010-10-01

So far only a few studies have been performed to assess the effects of dynamic pollutant exposure on life-history parameters of invertebrates. In a previous multi-generation approach with the midge Chironomus riparius we tested if a chronic tributyltin pre-exposure alters the ability of a population to cope with subsequent cadmium stress. In the experiment two separate chironomid populations were exposed via sediments to different TBT-concentrations (4.46 and 8.93 μg Sn/kg dw) for several generations, followed by subsequent cadmium exposure (1.2 mg Cd/kg dw) for three generations. While the TBT-exposure to 4.46 μg Sn/kg dw had only small effects on the development and reproduction of C. riparius the higher TBT-concentration of 8.93 μg Sn/kg dw led to negative effects on life-history traits. Therefore, a higher adverse effect of the higher TBT-concentration and thus a higher susceptibility to other stressors could be assumed. Within, this paper only the results of the second stressor experiment were presented; clear effects of Cd on development and reproduction of C. riparius were determined independent of the pre-exposure scenario. While no differences in Cd-sensitivity were found between the population without pre-exposure to TBT and the population pre-exposed to the low TBT-concentration (4.46 μg Sn/kg dw), the pre-exposure of midges to the higher TBT-concentration (8.93 μg Sn/kg dw) resulted in a significantly higher susceptibility to subsequent Cd-stress. These results document that the exposure history may influence the reaction to altered chemical stress. Our findings are relevant to understand and predict the evolutionary fate of populations in rapidly changing, human-impacted environments. However, the fact that chemical-induced reduced genetic diversity, which is not necessarily linked to genetic adaptation, leads to a reduced fitness under altered stress conditions, is to our knowledge a novel finding.

Synchronization and survival of connected bacterial populations

Science.gov (United States)

Gokhale, Shreyas; Conwill, Arolyn; Ranjan, Tanvi; Gore, Jeff

Migration plays a vital role in controlling population dynamics of species occupying distinct habitat patches. While local populations are vulnerable to extinction due to demographic or environmental stochasticity, migration from neighboring habitat patches can rescue these populations through colonization of uninhabited regions. However, a large migratory flux can synchronize the population dynamics in connected patches, thereby enhancing the risk of global extinction during periods of depression in population size. Here, we investigate this trade-off between local rescue and global extinction experimentally using laboratory populations of E. coli bacteria. Our model system consists of co-cultures of ampicillin resistant and chloramphenicol resistant strains that form a cross-protection mutualism and exhibit period-3 oscillations in the relative population density in the presence of both antibiotics. We quantify the onset of synchronization of oscillations in a pair of co-cultures connected by migration and demonstrate that period-3 oscillations can be disturbed for moderate rates of migration. These features are consistent with simulations of a mechanistic model of antibiotic deactivation in our system. The simulations further predict that the probability of survival of connected populations in high concentrations of antibiotics is maximized at intermediate migration rates. We verify this prediction experimentally and show that survival is enhanced through a combination of disturbance of period-3 oscillations and stochastic re-colonization events.

Observations of cocooned Hydrobaenus (Diptera: Chironomidae) larvae in Lake Michigan

Science.gov (United States)

Tucker, Taaja R.; Hudson, Patrick L.; Riley, Stephen

2016-01-01

Larvae of the family Chironomidae have developed a variety of ways to tolerate environmental stress, including the formation of cocoons, which allows larvae to avoid unfavorable temperature conditions, drought, or competition with other chironomids. Summer cocoon formation by younger instars of the genus Hydrobaenus Fries allows persistence through increased temperatures and/or intermittent dry periods in arid regions or temporary habitats, but this behavior was not observed in the Great Lakes until the current study. Cocoon-aestivating Hydrobaenus sp. larvae were found in benthic grab samples collected in 2010–2013 near Sleeping Bear Dunes National Lakeshore in northern Lake Michigan with densities up to 7329/m2. The aestivating species was identified as Hydrobaenus johannseni (Sublette, 1967), and the associated chironomid community was typical for an oligotrophic nearshore system. Hydrobaenus cocoon formation in the Great Lakes was likely previously unnoticed due to the discrepancies between the genus' life history and typical benthos sampling procedures which has consequences for describing chironomid communities where Hydrobaenus is present.

Emergence, growth, and dispersal of Chironomidae in reclaimed wetlands in the Athabasca oil sands region of Alberta

Energy Technology Data Exchange (ETDEWEB)

Kennedy, K.; Ciborowski, J. [Windsor Univ., ON (Canada)

2010-07-01

Concerns over the environmental impacts of oil sands extraction in northeastern Alberta has increased as the industry continues to expand. This study examined if the emergence, growth, and dispersal of Chironomidae differ in reclaimed wetlands constructed with oil sands process materials (OSPM) when compared with growth in reference wetlands. Five floating 30 cm diameter halo traps were deployed in various wetlands for a 24 hour period. Exuviae trapped in the surface water film were then collected, identified, and counted. Chironomids grown in laboratories from egg masses collected from 2 OSPM-affected wetlands and 2 reference wetlands were paired according to geographic proximity under controlled conditions for 1 generation. Chironomid larval growth was quantified in situ in the wetlands by reciprocally transferring second instar, second generation culture larva. The dispersal of the larvae was quantified by tabulating the number of adults caught in sticky insect traps located along 3 radially-arranged transects in each wetland. A preliminary analysis has suggested that fewer chironomids emerged from the OSPM-affected wetlands. No differences in dispersal distance between the OSPM-affected and reference wetlands were observed.

Emergence, growth, and dispersal of Chironomidae in reclaimed wetlands in the Athabasca oil sands region of Alberta

International Nuclear Information System (INIS)

Kennedy, K.; Ciborowski, J.

2010-01-01

Concerns over the environmental impacts of oil sands extraction in northeastern Alberta has increased as the industry continues to expand. This study examined if the emergence, growth, and dispersal of Chironomidae differ in reclaimed wetlands constructed with oil sands process materials (OSPM) when compared with growth in reference wetlands. Five floating 30 cm diameter halo traps were deployed in various wetlands for a 24 hour period. Exuviae trapped in the surface water film were then collected, identified, and counted. Chironomids grown in laboratories from egg masses collected from 2 OSPM-affected wetlands and 2 reference wetlands were paired according to geographic proximity under controlled conditions for 1 generation. Chironomid larval growth was quantified in situ in the wetlands by reciprocally transferring second instar, second generation culture larva. The dispersal of the larvae was quantified by tabulating the number of adults caught in sticky insect traps located along 3 radially-arranged transects in each wetland. A preliminary analysis has suggested that fewer chironomids emerged from the OSPM-affected wetlands. No differences in dispersal distance between the OSPM-affected and reference wetlands were observed.

Non-Selective Evolution of Growing Populations.

Directory of Open Access Journals (Sweden)

Karl Wienand

Full Text Available Non-selective effects, like genetic drift, are an important factor in modern conceptions of evolution, and have been extensively studied for constant population sizes (Kimura, 1955; Otto and Whitlock, 1997. Here, we consider non-selective evolution in the case of growing populations that are of small size and have varying trait compositions (e.g. after a population bottleneck. We find that, in these conditions, populations never fixate to a trait, but tend to a random limit composition, and that the distribution of compositions "freezes" to a steady state. This final state is crucially influenced by the initial conditions. We obtain these findings from a combined theoretical and experimental approach, using multiple mixed subpopulations of two Pseudomonas putida strains in non-selective growth conditions (Matthijs et al, 2009 as model system. The experimental results for the population dynamics match the theoretical predictions based on the Pólya urn model (Eggenberger and Pólya, 1923 for all analyzed parameter regimes. In summary, we show that exponential growth stops genetic drift. This result contrasts with previous theoretical analyses of non-selective evolution (e.g. genetic drift, which investigated how traits spread and eventually take over populations (fixate (Kimura, 1955; Otto and Whitlock, 1997. Moreover, our work highlights how deeply growth influences non-selective evolution, and how it plays a key role in maintaining genetic variability. Consequently, it is of particular importance in life-cycles models (Melbinger et al, 2010; Cremer et al, 2011; Cremer et al, 2012 of periodically shrinking and expanding populations.

Evolutionary optimization of rotational population transfer

Energy Technology Data Exchange (ETDEWEB)

Rouzee, Arnaud; Vrakking, Marc J. J. [FOM Institute for Atomic and Molecular Physics (AMOLF), Science Park 104, NL-1098 XG Amsterdam (Netherlands); Max Born Institut, Max Born Strasse 2A, D-12489, Berlin (Germany); Ghafur, Omair; Gijsbertsen, Arjan [FOM Institute for Atomic and Molecular Physics (AMOLF), Science Park 104, NL-1098 XG Amsterdam (Netherlands); Vidma, Konstantin; Meijer, Afric; Zande, Wim J. van der; Parker, David [Institute of Molecules and Materials, Radboud University Nijmegen, Toernooiveld 1, NL-6500 GL Nijmegen (Netherlands); Shir, Ofer M.; Baeck, Thomas [Leiden Institute of Advanced Computer Science (LIACS), Niels Bohrweg 1, NL-2333 CA Leiden (Netherlands)

2011-09-15

We present experimental and numerical studies on control of rotational population transfer of NO(J=1/2) molecules to higher rotational states. We are able to transfer 57% of the population to the J=5/2 state and 46% to J=9/2, in good agreement with quantum mechanical simulations. The optimal pulse shapes are composed of pulse sequences with delays corresponding to the beat frequencies of states on the rotational ladder. The evolutionary algorithm is limited by experimental constraints such as volume averaging and the finite laser intensity used, the latter to circumvent ionization. Without these constraints, near-perfect control (>98%) is possible. In addition, we show that downward control, moving molecules from high to low rotational states, is also possible.

Evolutionary optimization of rotational population transfer

International Nuclear Information System (INIS)

Rouzee, Arnaud; Vrakking, Marc J. J.; Ghafur, Omair; Gijsbertsen, Arjan; Vidma, Konstantin; Meijer, Afric; Zande, Wim J. van der; Parker, David; Shir, Ofer M.; Baeck, Thomas

2011-01-01

We present experimental and numerical studies on control of rotational population transfer of NO(J=1/2) molecules to higher rotational states. We are able to transfer 57% of the population to the J=5/2 state and 46% to J=9/2, in good agreement with quantum mechanical simulations. The optimal pulse shapes are composed of pulse sequences with delays corresponding to the beat frequencies of states on the rotational ladder. The evolutionary algorithm is limited by experimental constraints such as volume averaging and the finite laser intensity used, the latter to circumvent ionization. Without these constraints, near-perfect control (>98%) is possible. In addition, we show that downward control, moving molecules from high to low rotational states, is also possible.

Experimental physics method

International Nuclear Information System (INIS)

Jeong, Yang Su; Oh, Byeong Seong

2010-05-01

This book introduces measurement and error, statistics of experimental data, population, sample variable, distribution function, propagation of error, mean and measurement of error, adjusting to rectilinear equation, common sense of error, experiment method, and record and statement. It also explains importance of error of estimation, systematic error, random error, treatment of single variable, significant figure, deviation, mean value, median, mode, sample mean, sample standard deviation, binomial distribution, gauss distribution, and method of least squares.

Seasonal diet pattern of non-native tubenose goby (Proterorhinus semilunaris in a lowland reservoir (Mušov, Czech Republic

Directory of Open Access Journals (Sweden)

Adámek Z.

2010-08-01

Full Text Available The tubenose goby (Proterorhinus semilunaris is a gobiid species currently extending its area of distribution in Central Europe. The objective of the study was to evaluate the annual pattern of its feeding habits in the newly colonised habitats of the Mušov reservoir on the Dyje River (the Danube basin, Czech Republic with respect to natural food resources. In the reservoir, tubenose goby has established a numerous population, densely colonising stony rip-rap banks. Its diet was exclusively of animal origin with significant dominance of and preference for two food items – chironomid (Chironomidae larvae and waterlouse (Asellus aquaticus, which contributed 40.2 and 27.6%, respectively, to the total food bulk ingested. The index of preponderance for the two items was also very high, amounting to 73.8 and 26.5, respectively. In the annual pattern, a remarkable preference for chironomid larvae was recorded in the summer period whilst waterlouse were consumed predominantly in winter months. The proportion of other food items was rather marginal – only corixids, copepods, ceratopogonids and cladocerans were of certain minor importance with proportions of 5.4, 4.3, 4.1 and 3.9%, respectively. Certain signs of cannibalism were also recorded, with 0.9 and 0.2% of the diet consisting of their own progeny and eggs, respectively.

Natural Selection in Large Populations

Science.gov (United States)

Desai, Michael

2011-03-01

I will discuss theoretical and experimental approaches to the evolutionary dynamics and population genetics of natural selection in large populations. In these populations, many mutations are often present simultaneously, and because recombination is limited, selection cannot act on them all independently. Rather, it can only affect whole combinations of mutations linked together on the same chromosome. Methods common in theoretical population genetics have been of limited utility in analyzing this coupling between the fates of different mutations. In the past few years it has become increasingly clear that this is a crucial gap in our understanding, as sequence data has begun to show that selection appears to act pervasively on many linked sites in a wide range of populations, including viruses, microbes, Drosophila, and humans. I will describe approaches that combine analytical tools drawn from statistical physics and dynamical systems with traditional methods in theoretical population genetics to address this problem, and describe how experiments in budding yeast can help us directly observe these evolutionary dynamics.

The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living polynucleobacter population.

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Martin W Hahn

Full Text Available The bacterial taxon Polynucleobacter necessarius subspecies asymbioticus represents a group of planktonic freshwater bacteria with cosmopolitan and ubiquitous distribution in standing freshwater habitats. These bacteria comprise <1% to 70% (on average about 20% of total bacterioplankton cells in various freshwater habitats. The ubiquity of this taxon was recently explained by intra-taxon ecological diversification, i.e. specialization of lineages to specific environmental conditions; however, details on specific adaptations are not known. Here we investigated by means of genomic and experimental analyses the ecological adaptation of a persistent population dwelling in a small acidic pond.The investigated population (F10 lineage contributed on average 11% to total bacterioplankton in the pond during the vegetation periods (ice-free period, usually May to November. Only a low degree of genetic diversification of the population could be revealed. These bacteria are characterized by a small genome size (2.1 Mb, a relatively small number of genes involved in transduction of environmental signals, and the lack of motility and quorum sensing. Experiments indicated that these bacteria live as chemoorganotrophs by mainly utilizing low-molecular-weight substrates derived from photooxidation of humic substances.Evolutionary genome streamlining resulted in a highly passive lifestyle so far only known among free-living bacteria from pelagic marine taxa dwelling in environmentally stable nutrient-poor off-shore systems. Surprisingly, such a lifestyle is also successful in a highly dynamic and nutrient-richer environment such as the water column of the investigated pond, which was undergoing complete mixis and pronounced stratification in diurnal cycles. Obviously, metabolic and ecological versatility is not a prerequisite for long-lasting establishment of abundant bacterial populations under highly dynamic environmental conditions. Caution should be exercised

Pricing decisions in an experimental dynamic stochastic general equilibrium economy

NARCIS (Netherlands)

Noussair, C.N.; Pfajfar, D.; Zsiros, J.

We construct experimental economies, populated with human subjects, with a structure based on a nonlinear version of the New Keynesian dynamic stochastic general equilibrium (DSGE) model. We analyze the behavior of firms’ pricing decisions in four different experimental economies. We consider how

Density-dependent feedbacks can mask environmental drivers of populations

DEFF Research Database (Denmark)

Dahlgren, Johan Petter

I present some results from studies identifying environmental drivers of vital rates and population dynamics when controlling for intraspecific density statistically or experimentally, show that density dependence can be strong even in populations of slow-growing species in stressful habitats, an...

Feasible Initial Population with Genetic Diversity for a Population-Based Algorithm Applied to the Vehicle Routing Problem with Time Windows

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Marco Antonio Cruz-Chávez

2016-01-01

Full Text Available A stochastic algorithm for obtaining feasible initial populations to the Vehicle Routing Problem with Time Windows is presented. The theoretical formulation for the Vehicle Routing Problem with Time Windows is explained. The proposed method is primarily divided into a clustering algorithm and a two-phase algorithm. The first step is the application of a modified k-means clustering algorithm which is proposed in this paper. The two-phase algorithm evaluates a partial solution to transform it into a feasible individual. The two-phase algorithm consists of a hybridization of four kinds of insertions which interact randomly to obtain feasible individuals. It has been proven that different kinds of insertions impact the diversity among individuals in initial populations, which is crucial for population-based algorithm behavior. A modification to the Hamming distance method is applied to the populations generated for the Vehicle Routing Problem with Time Windows to evaluate their diversity. Experimental tests were performed based on the Solomon benchmarking. Experimental results show that the proposed method facilitates generation of highly diverse populations, which vary according to the type and distribution of the instances.

Genetic effects of radon 222 in a population of Drosophila melanogaster chronically exposed

International Nuclear Information System (INIS)

Salceda, V.M.

1997-01-01

It was investigated the mutagenic effect of Radon 222 during a experimental period of 11 generations. In this lapse Drosophila melanogaster larvae line Canton-S were maintained in a radon atmosphere. In each test generation had been extracted males, consequently exposed to radiation which were subjected to a crossing series with a bearer marker genes of according to the Wallace experimental design (1956). Due to the experimental conditions it only was determined the recessive lethal mutations frequency for the second chromosome in the 1,4,7 and 11 generations. Of all study it was conduced in parallel way a non-treated witness population. The concentrations at which was subjected the experimental population varied of generation to generation from 12 ± 2 to 43 ± 5 kBq/m 3 . Our analysis correspond to lethality determination in 1182 second chromosomes distributed between two populations and the different exposition generations. The study allow to determine the respective frequencies of recessive lethal genes varying according to the population and/or generation between 10.53 and 22.02%. The statistical analysis of data did not show significant differences among the different populations. (Author)

Chironomidae of semiaquatic lake shore habitats in the Karelian Isthmus (northwestern Russia

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Andrey Przhiboro

2012-10-01

Full Text Available Shores of lentic waters are poorly studied as habitats of Chironomidae. We investigated floating shore marsh surrounding the lakes Bol’shoe Rakovoe (Äyräpäänjärvi or Eteläjärvi and Okhotnich’e (Muolaanlampi, shallow mesotrophic wetlands in the Karelian Isthmus. Our research aimed to identify species structure of immature chironomid assemblages in this peculiar habitat and to provide their quantitative assessment. Five sites of the water margin zone (a 20-m part of floating marsh adjoining the lake littoral were studied using two techniques, quantitative samples taken with a grab-net and laboratory rearings of adults from substrata. Thirty-two samples were taken in July and October; 2970 emerging chironomid adults were identified. Nineteen species were found, 3 of Tanypodinae, 10 of Orthocladiinae and 6 of Chironominae. Tavastia yggdrasilia, Thienemanniella minuscula and Polypedilum trigonus are first recorded from Russia, and 8 more species, from NW Russia. Orthocladiinae accounted for over 99% emerging adults, with 3 species predominant and numerous on all sites, Paraphaenocladius impensus, Limnophyes minimus and L. natalensis. Species structure is discussed and compared with the data on similar habitats. Chironomid larvae were most numerous macroinvertebrates. Mean abundance of chironomid immatures varied from 1246 to 32060 ind./m2, mean biomass, 0.104 to 3.591 g(wet weight/m2, depending on site and season. In July, Chironomidae comprised 3-15% of Diptera biomass and 1-5% of macroinvertebrates biomass; in October, 13-49% and 7-20%, respectively.doi: 10.5324/fn.v31i0.1410.Published online: 17 October 2012.

Experimental design and quantitative analysis of microbial community multiomics.

Science.gov (United States)

Mallick, Himel; Ma, Siyuan; Franzosa, Eric A; Vatanen, Tommi; Morgan, Xochitl C; Huttenhower, Curtis

2017-11-30

Studies of the microbiome have become increasingly sophisticated, and multiple sequence-based, molecular methods as well as culture-based methods exist for population-scale microbiome profiles. To link the resulting host and microbial data types to human health, several experimental design considerations, data analysis challenges, and statistical epidemiological approaches must be addressed. Here, we survey current best practices for experimental design in microbiome molecular epidemiology, including technologies for generating, analyzing, and integrating microbiome multiomics data. We highlight studies that have identified molecular bioactives that influence human health, and we suggest steps for scaling translational microbiome research to high-throughput target discovery across large populations.

Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

DEFF Research Database (Denmark)

Bailey, Susan; Bataillon, Thomas

2015-01-01

and continue to play an important role in shaping adaptive evolution in the natural world. Further to this, experimental evolution studies allow for tests of theories that may be difficult or impossible to test in natural populations for logistical and methodological reasons and can even generate new insights......, suggesting further refinement of existing theories. However, as experimental evolution studies often take place in a very particular set of controlled conditions – that is simple environments, a small range of usually asexual species, relatively short timescales – the question remains as to how applicable...... natural population studies. We finish by making suggestions for future work in particular a need for natural population genomic time series data, as well as the necessity for studies that combine both experimental evolution and natural population approaches....

Evolution of apomixis loci in Pilosella and Hieracium (Asteraceae) inferred from the conservation of apomixis-linked markers in natural and experimental populations

Science.gov (United States)

Hand, M L; Vít, P; Krahulcová, A; Johnson, S D; Oelkers, K; Siddons, H; Chrtek, J; Fehrer, J; Koltunow, A M G

2015-01-01

The Hieracium and Pilosella (Lactuceae, Asteraceae) genera of closely related hawkweeds contain species with two different modes of gametophytic apomixis (asexual seed formation). Both genera contain polyploid species, and in wild populations, sexual and apomictic species co-exist. Apomixis is known to co-exist with sexuality in apomictic Pilosella individuals, however, apomictic Hieracium have been regarded as obligate apomicts. Here, a developmental analysis of apomixis within 16 Hieracium species revealed meiosis and megaspore tetrad formation in 1 to 7% of ovules, for the first time indicating residual sexuality in this genus. Molecular markers linked to the two independent, dominant loci LOSS OF APOMEIOSIS (LOA) and LOSS OF PARTHENOGENESIS (LOP) controlling apomixis in Pilosella piloselloides subsp. praealta were screened across 20 phenotyped Hieracium individuals from natural populations, and 65 phenotyped Pilosella individuals from natural and experimental cross populations, to examine their conservation, inheritance and association with reproductive modes. All of the tested LOA and LOP-linked markers were absent in the 20 Hieracium samples irrespective of their reproductive mode. Within Pilosella, LOA and LOP-linked markers were essentially absent within the sexual plants, although they were not conserved in all apomictic individuals. Both loci appeared to be inherited independently, and evidence for additional genetic factors influencing quantitative expression of LOA and LOP was obtained. Collectively, these data suggest independent evolution of apomixis in Hieracium and Pilosella and are discussed with respect to current knowledge of the evolution of apomixis. PMID:25026970

Dynamic energy budgets in population ecotoxicology: applications and outlook.

NARCIS (Netherlands)

Jager, T.; Barsi, A.; Hamda, N.T.; Martin, B.; Zimmer, E.I.; Ducrot, V.

2014-01-01

Most of the experimental testing in ecotoxicology takes place at the individual level, but the protection goals for environmental risk assessment are at the population level (or higher). Population modelling can fill this gap, but only models on a mechanistic basis allow for extrapolation beyond the

Experimental Population Genetics in the Introductory Genetics Laboratory Using "Drosophila" as a Model Organism

Science.gov (United States)

Johnson, Ronald; Kennon, Tillman

2009-01-01

Hypotheses of population genetics are derived and tested by students in the introductory genetics laboratory classroom as they explore the effects of biotic variables (physical traits of fruit flies) and abiotic variables (island size and distance) on fruit fly populations. In addition to this hypothesis-driven experiment, the development of…

Estimating the effects of 17α-ethinylestradiol on stochastic population growth rate of fathead minnows: a population synthesis of empirically derived vital rates

Science.gov (United States)

Schwindt, Adam R.; Winkelman, Dana L.

2016-01-01

Urban freshwater streams in arid climates are wastewater effluent dominated ecosystems particularly impacted by bioactive chemicals including steroid estrogens that disrupt vertebrate reproduction. However, more understanding of the population and ecological consequences of exposure to wastewater effluent is needed. We used empirically derived vital rate estimates from a mesocosm study to develop a stochastic stage-structured population model and evaluated the effect of 17α-ethinylestradiol (EE2), the estrogen in human contraceptive pills, on fathead minnow Pimephales promelas stochastic population growth rate. Tested EE2 concentrations ranged from 3.2 to 10.9 ng L−1 and produced stochastic population growth rates (λ S ) below 1 at the lowest concentration, indicating potential for population decline. Declines in λ S compared to controls were evident in treatments that were lethal to adult males despite statistically insignificant effects on egg production and juvenile recruitment. In fact, results indicated that λ S was most sensitive to the survival of juveniles and female egg production. More broadly, our results document that population model results may differ even when empirically derived estimates of vital rates are similar among experimental treatments, and demonstrate how population models integrate and project the effects of stressors throughout the life cycle. Thus, stochastic population models can more effectively evaluate the ecological consequences of experimentally derived vital rates.

Stickleback Population

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Ulrika Candolin

2012-01-01

Full Text Available Human-induced eutrophication has increased offspring production in a population of threespine stickleback Gasterosteus aculeatus in the Baltic Sea. Here, we experimentally investigated the effects of an increased density of juveniles on behaviours that influence survival and dispersal, and, hence, population growth—habitat choice, risk taking, and foraging rate. Juveniles were allowed to choose between two habitats that differed in structural complexity, in the absence and presence of predators and conspecific juveniles. In the absence of predators or conspecifics, juveniles preferred the more complex habitat. The preference was further enhanced in the presence of a natural predator, a perch Perca fluviatilis (behind a transparent Plexiglas wall. However, an increased density of conspecifics relaxed the predator-enhanced preference for the complex habitat and increased the use of the open, more predator-exposed habitat. Foraging rate was reduced under increased perceived predation risk. These results suggest that density-dependent behaviours can cause individuals to choose suboptimal habitats where predation risk is high and foraging rate low. This could contribute to the regulation of population growth in eutrophicated areas where offspring production is high.

Coevolving parasites and population size shape the evolution of mating behaviour

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Kerstes Niels AG

2013-02-01

Full Text Available Abstract Background Coevolution with parasites and population size are both expected to influence the evolution of mating rates. To gain insights into the interaction between these dual selective factors, we used populations from a coevolution experiment with the red flour beetle, Tribolium castaneum, and its microsporidian parasite, Nosema whitei. We maintained each experimental population at two different population sizes. We assayed the mating behaviour of both males and females from coevolved and paired non-coevolved control populations after 24 generations of coevolution with parasites. Results Males from large, coevolved populations (i.e. ancestors were exposed to parasites showed a reduced eagerness to mate compared to males from large, non-coevolved populations. But in small populations, coevolution did not lead to decreased male mating rates. Coevolved females from both large and small populations appeared to be more willing to accept mating than non-coevolved females. Conclusions This study provides unique, experimental insights into the combined roles of coevolving parasites and population size on the evolution of mating rate. Furthermore, we find that males and females respond differently to the same environmental conditions. Our results show that parasites can be key determinants of the sexual behaviour of their hosts.

Population consequences of aggregative movement

Science.gov (United States)

Peter Turchin

1989-01-01

Gregarious behaviour is an important factor influencing survival and reproduction of animals, as well as population interactions. In this paper I develop a model of movement with attraction or repulsion between conspecifics. To facilitate its use in empirical studies, the model is based on experimentally measurable features of individual behaviour.

A new model for the inference of population characteristics from experimental data using uncertainties

International Nuclear Information System (INIS)

Cofino, Wim P.; Stokkum, Ivo H.M. van; Steenwijk, Jaap van; Wells, David E.

2005-01-01

This paper extends a recent report on a model to establish population characteristics to include censored data. The theoretical background is given. The application given in this paper is limited to left-censored data, i.e. less than values, but the principles can also be adopted for other types of censored data. The model gives robust estimates of population characteristics for datasets with complicated underlying distributions including less than values of different magnitude and less than values exceeding the values of numerical data. The extended model is illustrated with simulated datasets, data from interlaboratory studies and temporal trend data on dissolved cadmium in the Rhine river. The calculations confirm that inclusion of left-censored values in the computation of population characteristics improves assessment procedures

Assessment of Po-210 exposure for the Italian population

International Nuclear Information System (INIS)

Clemente, G.F.; Renzetti, A.; Santori, G.; Breuer, F.

1980-01-01

Most of the natural internal dose of the general population due to alpha particles is associated with 210 Po exposure. The experimental data obtained to evaluate the levels of 210 Po exposure to members of the general Italian population and to some critical population groups exposed to high radon and daughter air concentration are summarized. The 210 Po content was measured in the following: a) daily diets; b) urinary excretions from members of the general population, both non-smokers and smokers; c) urinary excretions from workers in radioactive spas and non-uranium mines; d) teeth and bone samples from the general population. In most samples the content of 210 Pb, was also measured to assess the behaviour of 210 Po in man. A mathematical model fitting the experimental data was developed to describe the metabolism of systemic 210 Po. Four different levels of 210 Po exposure were detected according to the internal burden measured in the considered subjects. The corresponding dose rate to cortical and trabecular bone and soft tissue was evaluated. The values of the mean dose to the skeleton (cortical bone) were found to range from about 70 μGy/year for non-smokers of the general population to about 2 mGy/year for individuals working inside radioactive spas. (H.K.)

Does Nature and Persistence of Substrate at a Mesohabitat Scale Matter for Chironomidae Assemblages? a Study of Two Perennial Mountain Streams in Patagonia, Argentina

Science.gov (United States)

Epele, Luis Beltrán; Miserendino, María Laura; Brand, Cecilia

2012-01-01

Chironomid substrate—specific associations regarding the nature (organic—inorganic) and stability (stable—unstable) of different habitats were investigated at two low order Patagonian streams, during high and low water periods. Nant y Fall and Glyn rivers were visited twice (October 2007 and March 2008) and seven different habitat types were identified. A total of 60 samples were collected using a Surber sampler (0.09 m -2 and 250 µm) and a set of 23 environmental descriptors including physicochemical parameters and different fractions of particulate organic matter were assessed. 35 Chironomidae taxa were recorded with Orthocladiinae (20), Chironominae (7), and Podonominae (4) being the most well—represented subfamilies. Paratrichocladius sp. 1, Parapsectrocladius sp. 2, Parametriocnemus sp. 1, Pseudochironomus sp., and Rheotanytarsus sp. were the most abundant taxa. According to the relative preference index, at least 14 taxa showed strong affinity for a particular substrate. The structurally complex macrophyte Myriophyllum quitense supported 11 taxa compared with only five taxa found on the less complex Isoetes savatieri. Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel—sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. This work suggests that more complex substrates showing persistence in the temporal dimension supported a diverse array of chironomids, meaning that the maintenance of natural habitat heterogeneity is essential for the community. Land—use practices having significant effects on ecological stream attributes such as increased turbidity, sediment deposition, and runoff patterns will alter assemblages. Understanding environmental associations

Diversity and structure of Chironomidae communities in relation to water quality differences in the Swartkops River

Science.gov (United States)

Odume, O. N.; Muller, W. J.

The Swartkops River is an important freshwater ecosystem in South Africa. But owing to its location, it suffers varying degrees of human induced impacts which include industrial and domestic effluent discharges, deforestation as well as agricultural land use which have negatively impacted on the water quality. Diversity and community composition of aquatic insects are frequently used to assess environmental water quality status. Chironomids occupy extremely varied biotopes. Their extraordinary ecological range and environmental sensitivity make them particularly useful for assessing and interpreting changes in water quality of aquatic ecosystems. The community structure of chironomid larvae was investigated at four sites in the Swartkops River and effects of different chemical and physical variables on their distribution were explored. Chironomid larvae were collected using the South African Scoring System version 5 (SASS5) protocol. A total of 26 taxa from four sampling sites in the Swartkops River were identified. Margalef’s species richness index, equitability, Shannon and Simpson diversity indices were highest at site 1 (reference site). The downstream sites contained 6-20 taxa compared to the 25 taxa at site 1. Site 1 was characterised by the subfamilies Orthocladiinae, Tanypodinae and the tribe Tanytarsini while the impacted sites were characterised by Orthocladiinae and Chironomini. Chironomus spp., Dirotendipes sp., Kiefferulus sp. and Tanypus sp. seemed to be tolerant to pollution, occurring in high abundance at sites 2, 3 and 4. In contrast, Polypedilum sp., Tanytarsus sp., Orthocladius sp., Cricotopus spp. and Ablabesmyia sp. appeared to be more sensitive taxa, being less common at the impacted sites (sites 2, 3 and 4). Five days biochemical oxygen demand, dissolved oxygen, electrical conductivity, orthophosphate-phosphorus and total inorganic nitrogen were among the important variables that determine the observed chironomid community structure

Does nature and persistence of substrate at a mesohabitat scale matter for Chironomidae assemblages? A study of two perennial mountain streams in Patagonia, Argentina.

Science.gov (United States)

Epele, Luis Beltrán; Miserendino, María Laura; Brand, Cecilia

2012-01-01

Chironomid substrate-specific associations regarding the nature (organic-inorganic) and stability (stable-unstable) of different habitats were investigated at two low order Patagonian streams, during high and low water periods. Nant y Fall and Glyn rivers were visited twice (October 2007 and March 2008) and seven different habitat types were identified. A total of 60 samples were collected using a Surber sampler (0.09 m(-2) and 250 µm) and a set of 23 environmental descriptors including physicochemical parameters and different fractions of particulate organic matter were assessed. 35 Chironomidae taxa were recorded with Orthocladiinae (20), Chironominae (7), and Podonominae (4) being the most well-represented subfamilies. Paratrichocladius sp. 1, Parapsectrocladius sp. 2, Parametriocnemus sp. 1, Pseudochironomus sp., and Rheotanytarsus sp. were the most abundant taxa. According to the relative preference index, at least 14 taxa showed strong affinity for a particular substrate. The structurally complex macrophyte Myriophyllum quitense supported 11 taxa compared with only five taxa found on the less complex Isoetes savatieri. Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel-sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. This work suggests that more complex substrates showing persistence in the temporal dimension supported a diverse array of chironomids, meaning that the maintenance of natural habitat heterogeneity is essential for the community. Land-use practices having significant effects on ecological stream attributes such as increased turbidity, sediment deposition, and runoff patterns will alter assemblages. Understanding environmental associations of the

The evolution of RNA viruses: A population genetics view

Science.gov (United States)

Moya, Andrés; Elena, Santiago F.; Bracho, Alma; Miralles, Rosario; Barrio, Eladio

2000-01-01

RNA viruses are excellent experimental models for studying evolution under the theoretical framework of population genetics. For a proper justification of this thesis we have introduced some properties of RNA viruses that are relevant for studying evolution. On the other hand, population genetics is a reductionistic theory of evolution. It does not consider or make simplistic assumptions on the transformation laws within and between genotypic and phenotypic spaces. However, such laws are minimized in the case of RNA viruses because the phenotypic space maps onto the genotypic space in a much more linear way than on higher DNA-based organisms. Under experimental conditions, we have tested the role of deleterious and beneficial mutations in the degree of adaptation of vesicular stomatitis virus (VSV), a nonsegmented virus of negative strand. We also have studied how effective population size, initial genetic variability in populations, and environmental heterogeneity shapes the impact of mutations in the evolution of vesicular stomatitis virus. Finally, in an integrative attempt, we discuss pros and cons of the quasispecies theory compared with classic population genetics models for haploid organisms to explain the evolution of RNA viruses. PMID:10860958

Genetic variability in chronic irradiated plant populations - Polymorphism and activity of antioxidant enzymes in chronic irradiated plant populations

Energy Technology Data Exchange (ETDEWEB)

Volkova, Polina Y.; Geras' kin, Stanislav A. [Russian Institute of Agricultural Radiology and Agroecology, 249030, Obninsk, Kievskoe shosse 109 km (Russian Federation)

2014-07-01

Introduction: The gene pool of natural population is constantly changing in order to provide the greatest fitness at this time. Ability of population to adapt to changing environmental conditions depends on genetic polymorphism of traits which are operates by selection. Chronic stress exposure can change amount or structure intra-population variability. Therefore, it is necessary to analyze the relationships between genetic polymorphism and stress factors, such as radiation exposure. This studies my assist in the development of new bio-indication methods. Materials and methods: Studying sites: Bryansk region is the most contaminated region of Russia as a result of Chernobyl accident. The initial activity by {sup 137}Cs on this territory reached 1 MBq/m{sup 2} above surface. Our study conducted in several districts of Bryansk region, which are characterized the most dose rate. Experimental sites similar to climate characteristics, stand of trees is homogeneous, pine trees take up a significant part of phytocenosis. Heavy metals content in soils and cones be within background. Dose rates vary from 0.14 to 130 mGy/year. Object: Pinus sylvestris L.,the dominant tree species in North European and Asian boreal forests. Scots pine has a long maturation period (18-20 month), which means that significant DNA damage may accumulate in the undifferentiated stem cells, even at low doses (or dose rates) during exposure to low concentrations of contaminants Isozyme analysis: We evaluated isozyme polymorphism of three antioxidant enzymes: superoxide dismutase, glutatione reductase and glutatione peroxidase. Analysis of enzymes activities: We chose key enzymes of antioxidant system for this experiment: superoxide dismutase, catalase and peroxidase. Results and conclusions: We estimated frequency of each allele in reference and experimental populations. based It was showed that frequency of rare alleles increase in chronic irradiated populations, i.e. increase the sampling variance

Laboratory and field investigations of pestiferous Chironomidae (Diptera) in some man-made wetlands in central Florida, USA.

Science.gov (United States)

Ali, Arshad; Leckel, Robert J; Jahan, Nusrad; Al-Shami, Salman A; Rawi, Che Salmah Md

2009-03-01

A 1-year larval and adult population survey of pestiferous chironomids was conducted in 4 man-made wetlands in a resort area of central Florida, USA. Benthic samples were randomly collected from each wetland at least once every month. Geocoordinates, water depth, and physical composition of substrates at each larval sample location were noted. Adult midge populations were sampled weekly around the wetlands by employing 10 New Jersey light traps permanently placed in the area. Chironominae and Tanypodinae midges occurred in the larval and adult samples; a few Orthocladiinae were also taken. Among Chironominae, Chironomini (mostly Polypedilum spp., Cryptochironomus spp., Glyptotendipes paripes, and Goeldichironomus carus) and Tanytarsini (mostly Tanytarsus spp.), and some other Chironomidae were recorded. Tanypodinae were quantitatively not important. Monthly mean number of total adults per trap-night ranged from 23 in February to 211 in October. Annual mean larval density and range of total chironomids in the study wetlands amounted to 1,128/m2, range: 0-12,332/m2. The total larvae were most abundant in May. Tanytarsus spp. and Polypedilum spp. were numerically the most predominant spatially as well as temporally. Mean water depth at the sampled locations was 1.83 m (range: 1-m-deep water. Of all sampled locations, substrates such as sand, mixed substrates, and muck were respectively encountered at 656, 371, and 299 locations. The predominance of sand and mixed substrates was conducive to supporting the numerically dominant Tanytarsus spp. and Polypedilum spp. In laboratory bioassays, Tanytarsus spp., Polypedilum spp., Glyptotendipes paripes, and Goeldichironomus carus were highly susceptible to temephos, as well as to s-methoprene. Bacillus thuringiensis serovar. israelensis was most effective against Tanytarsus spp. and least against Goeldichironomus carus.

Population Demographic History Can Cause the Appearance of Recombination Hotspots

Science.gov (United States)

Johnston, Henry R.; Cutler, David J.

2012-01-01

Although the prevailing view among geneticists suggests that recombination hotspots exist ubiquitously across the human genome, there is only limited experimental evidence from a few genomic regions to support the generality of this claim. A small number of true recombination hotspots are well supported experimentally, but the vast majority of hotspots have been identified on the basis of population genetic inferences from the patterns of linkage disequilibrium (LD) seen in the human population. These inferences are made assuming a particular model of human history, and one of the assumptions of that model is that the effective population size of humans has remained constant throughout our history. Our results show that relaxation of the constant population size assumption can create LD and variation patterns that are qualitatively and quantitatively similar to human populations without any need to invoke localized hotspots of recombination. In other words, apparent recombination hotspots could be an artifact of variable population size over time. Several lines of evidence suggest that the vast majority of hotspots identified on the basis of LD information are unlikely to have elevated recombination rates. PMID:22560089

Aquatic ecosystem responses to Holocene climate change and biome development in boreal, central Asia

Science.gov (United States)

Mackay, Anson W.; Bezrukova, Elena V.; Leng, Melanie J.; Meaney, Miriam; Nunes, Ana; Piotrowska, Natalia; Self, Angela; Shchetnikov, Alexander; Shilland, Ewan; Tarasov, Pavel; Wang, Luo; White, Dustin

2012-05-01

were also significant, but considerably less important. The potential importance of climate and biome development (tundra, steppe, cold deciduous forest and taiga) on different trophic levels (i.e. chironomid and diatom communities) in lake ESM-1 was also assessed using RDA. Climate predictors had a more significant influence on Holocene chironomid assemblages, especially July insolation at 60 °N, estimates of regional precipitation and estimates of northern hemisphere temperature, while only the development of the taiga biome had a significant impact on these primary consumers. Diatom communities also had a small, but significant influence on Holocene chironomid populations, perhaps linked to variation in faunal feeding strategies. In contrast, climatic and biome predictors explained similar amounts of variation in the Holocene diatom assemblage (approximately 20% each), while chironomids themselves as predictors explained just under 7% of diatom variation. Lake acidity was inferred using a diatom inference model. Results suggest that after deglaciation, the lake did not undergo a process of gradual acidification, most likely due to the presence of continuous permafrost and low levels of precipitation, preventing base cations and dissolved organic carbon entering the lake (except for the period between 1.7 and 0.7 ka BP). We conclude that lakes in continental, boreal regions undergo different models of lake ontogeny than oceanic boreal regions. Unlike other regions discussed, climate is a more important driver of ecosystem change than catchment changes. We also demonstrate that the start of the period coincident with the onset of the Little Ice Age resulted in important thresholds crossed in catchment vegetation and aquatic communities.

Genetic monitoring of experimental Drosophila populations exposed to X-radiation and treated with melanin

International Nuclear Information System (INIS)

Mosseh, I.B.; Savchenko, V.K.; Lyakh, I.P.

1985-01-01

Monitoring of laboratory populations of Drosophila over four years has demonstrated that X radiation of 0.25 C/kg, delivered during the life span of each generation, causes a decrease of 20% and 30%, on the average, in the number of individuals in 1-55 generations and 45-55 generations, respectively. The antimutagen, melanin, added to a nutrient medium has no effect on the number of individuals in populations

Feedback between Population and Evolutionary Dynamics Determines the Fate of Social Microbial Populations

Science.gov (United States)

Sanchez, Alvaro; Gore, Jeff

2013-01-01

The evolutionary spread of cheater strategies can destabilize populations engaging in social cooperative behaviors, thus demonstrating that evolutionary changes can have profound implications for population dynamics. At the same time, the relative fitness of cooperative traits often depends upon population density, thus leading to the potential for bi-directional coupling between population density and the evolution of a cooperative trait. Despite the potential importance of these eco-evolutionary feedback loops in social species, they have not yet been demonstrated experimentally and their ecological implications are poorly understood. Here, we demonstrate the presence of a strong feedback loop between population dynamics and the evolutionary dynamics of a social microbial gene, SUC2, in laboratory yeast populations whose cooperative growth is mediated by the SUC2 gene. We directly visualize eco-evolutionary trajectories of hundreds of populations over 50–100 generations, allowing us to characterize the phase space describing the interplay of evolution and ecology in this system. Small populations collapse despite continual evolution towards increased cooperative allele frequencies; large populations with a sufficient number of cooperators “spiral” to a stable state of coexistence between cooperator and cheater strategies. The presence of cheaters does not significantly affect the equilibrium population density, but it does reduce the resilience of the population as well as its ability to adapt to a rapidly deteriorating environment. Our results demonstrate the potential ecological importance of coupling between evolutionary dynamics and the population dynamics of cooperatively growing organisms, particularly in microbes. Our study suggests that this interaction may need to be considered in order to explain intraspecific variability in cooperative behaviors, and also that this feedback between evolution and ecology can critically affect the demographic fate

feedback between population and evolutionary dynamics determines the fate of social microbial populations.

Directory of Open Access Journals (Sweden)

Alvaro Sanchez

Full Text Available The evolutionary spread of cheater strategies can destabilize populations engaging in social cooperative behaviors, thus demonstrating that evolutionary changes can have profound implications for population dynamics. At the same time, the relative fitness of cooperative traits often depends upon population density, thus leading to the potential for bi-directional coupling between population density and the evolution of a cooperative trait. Despite the potential importance of these eco-evolutionary feedback loops in social species, they have not yet been demonstrated experimentally and their ecological implications are poorly understood. Here, we demonstrate the presence of a strong feedback loop between population dynamics and the evolutionary dynamics of a social microbial gene, SUC2, in laboratory yeast populations whose cooperative growth is mediated by the SUC2 gene. We directly visualize eco-evolutionary trajectories of hundreds of populations over 50-100 generations, allowing us to characterize the phase space describing the interplay of evolution and ecology in this system. Small populations collapse despite continual evolution towards increased cooperative allele frequencies; large populations with a sufficient number of cooperators "spiral" to a stable state of coexistence between cooperator and cheater strategies. The presence of cheaters does not significantly affect the equilibrium population density, but it does reduce the resilience of the population as well as its ability to adapt to a rapidly deteriorating environment. Our results demonstrate the potential ecological importance of coupling between evolutionary dynamics and the population dynamics of cooperatively growing organisms, particularly in microbes. Our study suggests that this interaction may need to be considered in order to explain intraspecific variability in cooperative behaviors, and also that this feedback between evolution and ecology can critically affect the

Mouthpart deformities in Chironomidae (Diptera) as bioindicators of heavy metals pollution in Shiroro Lake, Niger State, Nigeria.

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Arimoro, Francis O; Auta, Yohanna I; Odume, Oghenekaro N; Keke, Unique N; Mohammed, Adamu Z

2018-03-01

In this study, mouthpart deformities in Chironomid larvae (Diptera) were investigated in relation to sediment contamination in the Shiroro Lake in Nigeria. Metals and chironomids were sampled monthly at three stations (A-C) between August 2013 and January 2014. Across the stations, zinc ranged (3.9-75mg/g), manganese (1.29-1.65mg/g), lead (0.00-0.10mg/g), iron (101-168mg/g) and copper (0.13-0.17mg/g). The metal ions did not differ significantly (P > 0.05) between the sampling stations. However, zinc and iron ions were significantly different between the sampling seasons (P < 0.05). Thirteen chironomid species were recorded, with Chironomus sp., Polypedilum sp. and Ablabesmyia sp. dominating the assemblage structure. Mouthpart deformities were significantly higher at Station A compared with Station C, and seasonally significantly higher during dry season compared with wet season. Elevated incidences of deformity were recorded in Chironomus spp larvae as compared to other genera therefore for further studies in this region assessments should be based solely on Chironomus species and ignoring the rest. Strategies need to be developed to reduce the contaminations and the biological effects. Copyright © 2017 Elsevier Inc. All rights reserved.

Contrasting responses to long-term climate change of carbon flows to benthic consumers in two different sized lakes in the Baltic area.

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Belle, Simon; Freiberg, Rene; Poska, Anneli; Agasild, Helen; Alliksaar, Tiiu; Tõnno, Ilmar

2018-05-01

The study of lake sediments and archived biological remains is a promising approach to better understand the impacts of climate change on aquatic ecosystems. Small lakes have been shown to be strongly sensitive to past climate change, but similar information is lacking for large lakes. By identifying responses to climate change of carbon flows through benthic food web in two different sized lakes, we aimed to understand how lake morphometry can mediate the effects of climate change. We reconstructed the dynamics of phytoplankton community composition and carbon resources sustaining chironomid biomass during the Holocene from the combined analysis of sedimentary pigment quantification and carbon stable isotopic composition of subfossil chironomid head capsules (δ13CHC) in a large lake in the Baltic area (Estonia). Our results showed that chironomid biomass in the large lake was mainly sustained by phytoplankton, with no significant relationship between δ13CHC values and temperature fluctuations. We suggest that lake morphometry (including distance of the sampling zone to the shoreline, and lake volume for primary producers) mediates the effects of climate change, making large lakes less sensitive to climate change. Complementary studies are needed to better understand differences in organic matter dynamics in different sized lakes and to characterize the response of the aquatic carbon cycle to past climate change.

Reconstructing temperatures from lake sediments in northern Europe: what do the biological proxies really tell us?

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Cunningham, Laura; Holmes, Naomi; Bigler, Christian; Dadal, Anna; Bergman, Jonas; Eriksson, Lars; Brooks, Stephen; Langdon, Pete; Caseldine, Chris

2010-05-01

Over the past two decades considerable effort has been devoted to quantitatively reconstructing temperatures from biological proxies preserved in lake sediments, via transfer functions. Such transfer functions typically consist of modern sediment samples, collected over a broad environmental gradient. Correlations between the biological communities and environmental parameters observed over these broad gradients are assumed to be equally valid temporally. The predictive ability of such spatially based transfer functions has traditionally been assessed by comparisons of measured and inferred temperatures within the calibration sets, with little validation against historical data. Although statistical techniques such as bootstrapping may improve error estimation, this approach remains partly a circular argument. This raises the question of how reliable such reconstructions are for inferring past changes in temperature? In order to address this question, we used transfer functions to reconstruct July temperatures from diatoms and chironomids from several locations across northern Europe. The transfer functions used showed good internal calibration statistics (r2 = 0.66 - 0.91). The diatom and chironomid inferred July air temperatures were compared to local observational records. As the sediment records were non-annual, all data were first smoothed using a 15 yr moving average filter. None of the five biologically-inferred temperature records were correlated with the local meteorological records. Furthermore, diatom inferred temperatures did not agree with chironomid inferred temperatures from the same cores from the same sites. In an attempt to understand this poor performance the biological proxy data was compressed using principal component analysis (PCA), and the PCA axes compared to the local meteorological data. These analyses clearly demonstrated that July temperatures were not correlated with the biological data at these locations. Some correlations were

Experimental study of relative level populations in beam-foil excited Ar+7 and Kr+7

International Nuclear Information System (INIS)

Bashkin, S.; Oona, H.; Veje, E.

1981-01-01

The relative level populations in beam-foil excited sodium-like argon (Ar VIII) and copper-like krypton (Kr VIII) have been studied at 2 MeV projectile energy. In Ar VIII, the 3p and the 3d terms are strongly excited. The level population decreases rapidly with increasing value of the principal quantum number n, reaches a minimum for levels with n = 5 or 6, but increases then and reaches a strong maximum for levels with n approximately 11. Also the Kr VIII data show a population maximum for levels with n = 11. The strong 3p and 3d level excitations in Ar VIII are explained as selective inner-shell processes which can be understood in the molecular-orbital electron-promotion picture. The preferential population of high-flying Rydberg states is explained as resulting from a near-resonance electron transfer from the valence band of the carbon foil to the projectile. This process takes place when the projectile leaves the back of the foil. (Auth.)

Population FBA predicts metabolic phenotypes in yeast.

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Piyush Labhsetwar

2017-09-01

Full Text Available Using protein counts sampled from single cell proteomics distributions to constrain fluxes through a genome-scale model of metabolism, Population flux balance analysis (Population FBA successfully described metabolic heterogeneity in a population of independent Escherichia coli cells growing in a defined medium. We extend the methodology to account for correlations in protein expression arising from the co-regulation of genes and apply it to study the growth of independent Saccharomyces cerevisiae cells in two different growth media. We find the partitioning of flux between fermentation and respiration predicted by our model agrees with recent 13C fluxomics experiments, and that our model largely recovers the Crabtree effect (the experimentally known bias among certain yeast species toward fermentation with the production of ethanol even in the presence of oxygen, while FBA without proteomics constraints predicts respirative metabolism almost exclusively. The comparisons to the 13C study showed improvement upon inclusion of the correlations and motivated a technique to systematically identify inconsistent kinetic parameters in the literature. The minor secretion fluxes for glycerol and acetate are underestimated by our method, which indicate a need for further refinements to the metabolic model. For yeast cells grown in synthetic defined (SD medium, the calculated broad distribution of growth rates matches experimental observations from single cell studies, and we characterize several metabolic phenotypes within our modeled populations that make use of diverse pathways. Fast growing yeast cells are predicted to perform significant amount of respiration, use serine-glycine cycle and produce ethanol in mitochondria as opposed to slow growing cells. We use a genetic algorithm to determine the proteomics constraints necessary to reproduce the growth rate distributions seen experimentally. We find that a core set of 51 constraints are essential but

Explaining density-dependent regulation in earthworm populations using life-history analysis

NARCIS (Netherlands)

Kammenga, J.E.; Spurgeon, D.J.; Svendsen, C.; Weeks, J.M.

2003-01-01

At present there is little knowledge about how density regulates population growth rate and to what extent this is determined by life-history patterns. We compared density dependent population consequences in the Nicholsonian sense based oil experimental observations and life-history modeling for

Population genetic diversity and fitness in multiple environments

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McGreevy Thomas J

2010-07-01

Full Text Available Abstract Background When a large number of alleles are lost from a population, increases in individual homozygosity may reduce individual fitness through inbreeding depression. Modest losses of allelic diversity may also negatively impact long-term population viability by reducing the capacity of populations to adapt to altered environments. However, it is not clear how much genetic diversity within populations may be lost before populations are put at significant risk. Development of tools to evaluate this relationship would be a valuable contribution to conservation biology. To address these issues, we have created an experimental system that uses laboratory populations of an estuarine crustacean, Americamysis bahia with experimentally manipulated levels of genetic diversity. We created replicate cultures with five distinct levels of genetic diversity and monitored them for 16 weeks in both permissive (ambient seawater and stressful conditions (diluted seawater. The relationship between molecular genetic diversity at presumptive neutral loci and population vulnerability was assessed by AFLP analysis. Results Populations with very low genetic diversity demonstrated reduced fitness relative to high diversity populations even under permissive conditions. Population performance decreased in the stressful environment for all levels of genetic diversity relative to performance in the permissive environment. Twenty percent of the lowest diversity populations went extinct before the end of the study in permissive conditions, whereas 73% of the low diversity lines went extinct in the stressful environment. All high genetic diversity populations persisted for the duration of the study, although population sizes and reproduction were reduced under stressful environmental conditions. Levels of fitness varied more among replicate low diversity populations than among replicate populations with high genetic diversity. There was a significant correlation

Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli

DEFF Research Database (Denmark)

Crozat, Estelle; Winkworth, Cynthia; Gaffé, Joël

2010-01-01

, indicate that changes in DNA superhelicity have been important in the evolution of these populations. Surprisingly, however, most of the evolved alleles we tested had either no detectable or slightly deleterious effects on fitness, despite these signatures of positive selection.......DNA supercoiling is the master function that interconnects chromosome structure and global gene transcription. This function has recently been shown to be under strong selection in Escherichia coli. During the evolution of 12 initially identical populations propagated in a defined environment...

Influence of Multiple Infection and Relatedness on Virulence: Disease Dynamics in an Experimental Plant Population and Its Castrating Parasite

Science.gov (United States)

Buono, Lorenza; López-Villavicencio, Manuela; Shykoff, Jacqui A.; Snirc, Alodie; Giraud, Tatiana

2014-01-01

The level of parasite virulence, i.e., the decrease in host's fitness due to a pathogen, is expected to depend on several parameters, such as the type of the disease (e.g., castrating or host-killing) and the prevalence of multiple infections. Although these parameters have been extensively studied theoretically, few empirical data are available to validate theoretical predictions. Using the anther smut castrating disease on Silene latifolia caused by Microbotryum lychnidis-dioicae, we studied the dynamics of multiple infections and of different components of virulence (host death, non-recovery and percentage of castrated stems) during the entire lifespan of the host in an experimental population. We monitored the number of fungal genotypes within plants and their relatedness across five years, using microsatellite markers, as well as the rates of recovery and host death in the population. The mean relatedness among genotypes within plants remained at a high level throughout the entire host lifespan despite the dynamics of the disease, with recurrent new infections. Recovery was lower for plants with multiple infections compared to plants infected by a single genotype. As expected for castrating parasites, M. lychnidis-dioicae did not increase host mortality. Mortality varied across years but was generally lower for plants that had been diseased the preceding year. This is one of the few studies to have empirically verified theoretical expectations for castrating parasites, and to show particularly i) that castrated hosts live longer, suggesting that parasites can redirect resources normally used in reproduction to increase host lifespan, lengthening their transmission phase, and ii) that multiple infections increase virulence, here in terms of non-recovery and host castration. PMID:24892951

Rapid divergence and convergence of life-history in experimentally evolved Drosophila melanogaster.

Science.gov (United States)

Burke, Molly K; Barter, Thomas T; Cabral, Larry G; Kezos, James N; Phillips, Mark A; Rutledge, Grant A; Phung, Kevin H; Chen, Richard H; Nguyen, Huy D; Mueller, Laurence D; Rose, Michael R

2016-09-01

Laboratory selection experiments are alluring in their simplicity, power, and ability to inform us about how evolution works. A longstanding challenge facing evolution experiments with metazoans is that significant generational turnover takes a long time. In this work, we present data from a unique system of experimentally evolved laboratory populations of Drosophila melanogaster that have experienced three distinct life-history selection regimes. The goal of our study was to determine how quickly populations of a certain selection regime diverge phenotypically from their ancestors, and how quickly they converge with independently derived populations that share a selection regime. Our results indicate that phenotypic divergence from an ancestral population occurs rapidly, within dozens of generations, regardless of that population's evolutionary history. Similarly, populations sharing a selection treatment converge on common phenotypes in this same time frame, regardless of selection pressures those populations may have experienced in the past. These patterns of convergence and divergence emerged much faster than expected, suggesting that intermediate evolutionary history has transient effects in this system. The results we draw from this system are applicable to other experimental evolution projects, and suggest that many relevant questions can be sufficiently tested on shorter timescales than previously thought. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

The structuring process of the macroparasite community of an experimental population of cichlasoma urophthalmus through time

Science.gov (United States)

Vidal-Martinez; Kennedy; Aguirre-Macedo

1998-09-01

The structuring process of the macroparasite community of caged Cichlasoma urophthalmus was studied over time using sentinel fish. Three thousand uninfected cichlids were stocked in floating cages introduced into a quarry in which a wild population of the same species was present. Caged and wild cichlids were sampled monthly over 6 and 7 months, respectively. Seventeen macroparasite species were found in the wild C. urophthalmus population, ten of which were detected in the caged population after 6 months. Early infections were by those species that were more frequent and abundant in the wild population, while helminths with a low prevalence and abundance in the wild appeared later in the caged fish population. The results suggested that the structuring process of the macroparasite community of caged C. urophthalmus followed a predictable pattern, in which those species that were most frequent and abundant in the wild were the first to establish in sentinel fish.

Thyroid cancer. Reevaluation of an experimental model for radiogenic endocrine carcinogenesis

International Nuclear Information System (INIS)

Clifton, K.H.

1984-11-01

The status of experimental studies of radiogenic thyroid cancer is appraised, and some older data are reinterpreted in the light of more recent findings. Problems of thyroid dosimetry, particularly the dosimetry of internal radioiodides, are discussed. The steps in radiation carcinogenesis during the acute phase, the latent phase, and the phase of tumor growth are discussed in terms of thyroid epithelial cell population changes. The roles of three cell populations (undamaged or completely repaired epithelial cells, oncogenically initiated cells, and terminally damaged but functionally competent cells) in neoplasia are described. Finally, the implications for man of these experimental results and conclusions are discussed. 89 refs., 4 figs

Stationary Population Inversion in an Expanding Argon Plasma Jet by Helium Puffing

International Nuclear Information System (INIS)

Akatsuka, H.; Kano, K.

2005-01-01

An experiment of He gas-contact for generating population inversion in a recombining Ar plasma jet is carried out. Population inversion between Ar I excited states 5s' → 4p'[1/2]1 and 5s' → 4p[3/2]1,2, [5/2]2,3 is created by helium gas-contact cooling of electrons, whereas it is not created without gas-contact. Ar I lines 1.14 μm, 1.34 μm, and 1.09 μm are strongly enhanced due to the He gas cooling. It is experimentally found that helium gas contact effectively lowers electron temperature of the Ar plasma jet. The mechanisms giving rise to population inversion are discussed in terms of atomic collisional processes of the recombining plasma. The experimental results of electron temperature and population densities are discussed by simple numerical analysis which we previously developed. It is shown that the experimental results are well explained by our modeling quantitatively for the case without gas contact, except that the agreement of number densities of lower lying non-LTE levels is qualitative for the case with the gas contact

A Holocene temperature reconstruction from northern New Zealand: a test of North Atlantic Holocene climate patterns as a global template

Science.gov (United States)

van den Bos, Valerie; Rees, Andrew; Newnham, Rewi; Augustinus, Paul

2017-04-01

Holocene climate variability has been well defined in the North Atlantic (Walker et al., 2012), but the global extent of this climate change stratigraphy is debatable. If the North Atlantic serves as a global template for Holocene climate, then New Zealand (NZ) is ideally positioned to test this assertion, as it is distal from the northern drivers. Additionally, it is one of the few landmasses in the Southern Hemisphere that is influenced by both sub-tropical and extra-tropical climatic regimes, which may be more important controls in the southern mid-latitudes. Although much work has been done to characterise the Holocene in NZ using pollen, most of these records lack the resolution or sensitivity to determine whether abrupt or short-lived events occurred. The NZ-INTIMATE climate event stratigraphy lacks a type section for the Holocene (Alloway et al., 2007). Records from northern NZ typically show little change, other than a possible early Holocene warming. Here, we present a combined pollen and chironomid temperature reconstruction from Lake Pupuke (northern NZ), the first of its kind in NZ that covers the entire Holocene. By comparing mean annual temperatures reconstructed from fossil pollen and mean summer temperatures inferred from chironomid remains, we can assess changes in seasonality. Mean summer temperature was reconstructed from the chironomid record using a weighted averaging partial least squares (WA-PLS) model (n comp = 2, r2booth = 0.77, RMSEP = 1.4°C) developed from an expanded version of Dieffenbacher-Krall et al. (2007)'s chironomid training set. Preliminary results show evidence for cool summers during the early Holocene as well as around the period of the Little Ice Age as defined in the North Atlantic region. These and other climate patterns determined from the Pupuke chironomid and pollen records will be compared with other evidence from northern New Zealand and with the North Atlantic record of Holocene climate variability. References

The effects of landscape modifications on the long-term persistence of animal populations.

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Jacob Nabe-Nielsen

Full Text Available BACKGROUND: The effects of landscape modifications on the long-term persistence of wild animal populations is of crucial importance to wildlife managers and conservation biologists, but obtaining experimental evidence using real landscapes is usually impossible. To circumvent this problem we used individual-based models (IBMs of interacting animals in experimental modifications of a real Danish landscape. The models incorporate as much as possible of the behaviour and ecology of four species with contrasting life-history characteristics: skylark (Alauda arvensis, vole (Microtus agrestis, a ground beetle (Bembidion lampros and a linyphiid spider (Erigone atra. This allows us to quantify the population implications of experimental modifications of landscape configuration and composition. METHODOLOGY/PRINCIPAL FINDINGS: Starting with a real agricultural landscape, we progressively reduced landscape complexity by (i homogenizing habitat patch shapes, (ii randomizing the locations of the patches, and (iii randomizing the size of the patches. The first two steps increased landscape fragmentation. We assessed the effects of these manipulations on the long-term persistence of animal populations by measuring equilibrium population sizes and time to recovery after disturbance. Patch rearrangement and the presence of corridors had a large effect on the population dynamics of species whose local success depends on the surrounding terrain. Landscape modifications that reduced population sizes increased recovery times in the short-dispersing species, making small populations vulnerable to increasing disturbance. The species that were most strongly affected by large disturbances fluctuated little in population sizes in years when no perturbations took place. SIGNIFICANCE: Traditional approaches to the management and conservation of populations use either classical methods of population analysis, which fail to adequately account for the spatial configurations

Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters.

Science.gov (United States)

Lemire, Astrid; Goudenège, David; Versigny, Typhaine; Petton, Bruno; Calteau, Alexandra; Labreuche, Yannick; Le Roux, Frédérique

2015-07-01

Disease in oysters has been steadily rising over the past decade, threatening the long-term survival of commercial and natural stocks. Our understanding and management of such diseases are of critical importance as aquaculture is an important aspect of dealing with the approaching worldwide food shortage. Although some bacteria of the Vibrio genus isolated from diseased oysters have been demonstrated to be pathogenic by experimental infection, direct causality has not been established. Little is known about the dynamics of how the bacterial population hosted by oysters changes during disease progression. Combining experimental ecology, a high-throughput infection assay and genome sequencing, we show that the onset of disease in oysters is associated with progressive replacement of diverse benign colonizers by members of a phylogenetically coherent virulent population. Although the virulent population is genetically diverse, all members of that population can cause disease. Comparative genomics across virulent and nonvirulent populations identified candidate virulence factors that were clustered in population-specific genomic regions. Genetic analyses revealed that one gene for a candidate virulent factor, a putative outer membrane protein, is necessary for infection of oysters. Finally, analyses of oyster mortality following experimental infection suggest that disease onset can be facilitated by the presence of nonvirulent strains. This is a new form of polymicrobial disease, in which nonpathogenic strains contribute to increase mortality.

Spinosad: a biorational mosquito larvicide for use in car tires in southern Mexico

Directory of Open Access Journals (Sweden)

Marina Carlos F

2012-05-01

Full Text Available Abstract Background Car tires are important habitats for mosquito development because of the high density populations they can harbor and their presence in urban settings. Water in experimental tires was treated with one of three insecticides or an untreated control. Aquatic invertebrates were sampled at weekly intervals. Eggs, larval and pupal samples were laboratory-reared to estimate seasonal fluctuations in Aedes aegypti and Ae. albopictus abundance. Results Spinosad treatments at 1 or 5 ppm (mg a.i./liter provided 6–8 weeks of effective control of Ae. aegypti, Ae. albopictus, Culex quinquefasiatus and Cx. coronator larvae, both in the dry season and the rainy season when mosquito populations increased markedly in southern Mexico. Spinosad continued to provide partial control of larvae for several weeks after initial recolonization of treated tires. The larvicidal performance of VectoBac 12AS (Bacillus thuringiensis var. israelensis was relatively poor with one week of complete control of Aedes spp. larvae and no discernible control of Culex spp., whereas the duration of larvicidal activity of 1% temephos mineral-based granules was intermediate between those of VectoBac and spinosad treatments. Populations of chironomids, ostracods and Toxorhynchites theobaldi were generally reduced in spinosad and temephos treatments, but were similar in control and VectoBac treatments. Conclusion The present study is the first to report spinosad as an effective larvicide against Cx. coronator, which is currently invading the southern United States. These results substantiate the use of spinosad as a highly effective mosquito larvicide, even in habitats such as unused car tires that can represent prolific sources of adult mosquitoes.

SELECTION OF FISÁLIS POPULATIONS FOR HIBRIDIZATIONS, BASED ON FRUIT TRAITS

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NICOLE TREVISANI

2016-01-01

Full Text Available ABSTRACT The objective of this study was to characterize the genetic variability in fisális populations and select promising parents based on fruit traits. The experimental design consisted of randomized blocks, with six populations. Five plants per treatment were sampled. The evaluated traits were fruit weight, capsule weight, 1000- seed weight and fruit diameter. The data were subjected to multivariate analysis of variance with error specification between and within (p <0.05. Mahalanobis’ distance was used as a measure of genetic dissimilarity. Significant differences for the assessed traits were detected between fisális populations. The ratio error among by within indicated no need for sampling within the experimental unit. Dissimilarity was greatest between Lages and Vacaria. The most discriminating traits were capsule weight, fruit weight and fruit diameter. The multivariate contrasts indicated differences between the populations of Vacaria and from Caçador, Lages and Peru, selected for hybridizations.

Concise Review: Stem Cell Population Biology: Insights from Hematopoiesis.

Science.gov (United States)

MacLean, Adam L; Lo Celso, Cristina; Stumpf, Michael P H

2017-01-01

Stem cells are fundamental to human life and offer great therapeutic potential, yet their biology remains incompletely-or in cases even poorly-understood. The field of stem cell biology has grown substantially in recent years due to a combination of experimental and theoretical contributions: the experimental branch of this work provides data in an ever-increasing number of dimensions, while the theoretical branch seeks to determine suitable models of the fundamental stem cell processes that these data describe. The application of population dynamics to biology is amongst the oldest applications of mathematics to biology, and the population dynamics perspective continues to offer much today. Here we describe the impact that such a perspective has made in the field of stem cell biology. Using hematopoietic stem cells as our model system, we discuss the approaches that have been used to study their key properties, such as capacity for self-renewal, differentiation, and cell fate lineage choice. We will also discuss the relevance of population dynamics in models of stem cells and cancer, where competition naturally emerges as an influential factor on the temporal evolution of cell populations. Stem Cells 2017;35:80-88. © 2016 AlphaMed Press.

Early-Life Nutritional Programming of Type 2 Diabetes: Experimental and Quasi-Experimental Evidence.

Science.gov (United States)

Vaiserman, Alexander M

2017-03-05

Consistent evidence from both experimental and human studies suggest that inadequate nutrition in early life can contribute to risk of developing metabolic disorders including type 2 diabetes (T2D) in adult life. In human populations, most findings supporting a causative relationship between early-life malnutrition and subsequent risk of T2D were obtained from quasi-experimental studies ('natural experiments'). Prenatal and/or early postnatal exposures to famine were demonstrated to be associated with higher risk of T2D in many cohorts around the world. Recent studies have highlighted the importance of epigenetic regulation of gene expression as a possible major contributor to the link between the early-life famine exposure and T2D in adulthood. Findings from these studies suggest that prenatal exposure to the famine may result in induction of persistent epigenetic changes that have adaptive significance in postnatal development but can predispose to metabolic disorders including T2D at the late stages of life. In this review, quasi-experimental data on the developmental programming of T2D are summarized and recent research findings on changes in DNA methylation that mediate these effects are discussed.

The impact of rapid evolution on population dynamics in the wild: experimental test of eco-evolutionary dynamics.

Science.gov (United States)

Turcotte, Martin M; Reznick, David N; Hare, J Daniel

2011-11-01

Rapid evolution challenges the assumption that evolution is too slow to impact short-term ecological dynamics. This insight motivates the study of 'Eco-Evolutionary Dynamics' or how evolution and ecological processes reciprocally interact on short time scales. We tested how rapid evolution impacts concurrent population dynamics using an aphid (Myzus persicae) and an undomesticated host (Hirschfeldia incana) in replicated wild populations. We manipulated evolvability by creating non-evolving (single clone) and potentially evolving (two-clone) aphid populations that contained genetic variation in intrinsic growth rate. We observed significant evolution in two-clone populations whether or not they were exposed to predators and competitors. Evolving populations grew up to 42% faster and attained up to 67% higher density, compared with non-evolving control populations but only in treatments exposed to competitors and predators. Increased density also correlates with relative fitness of competing clones suggesting a full eco-evolutionary dynamic cycle defined as reciprocal interactions between evolution and density. © 2011 Blackwell Publishing Ltd/CNRS.

Cell mass and cell cycle dynamics of an asynchronous budding yeast population

DEFF Research Database (Denmark)

Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa

2013-01-01

of model predictions for cell property distributions against experimental data is scarce. This study focuses on the experimental and mathematical description of the dynamics of cell size and cell cycle position distributions, of a population of Saccharomyces cerevisiae, in response to the substrate...

Coherent population dynamics of a three-level atom in spacetime

International Nuclear Information System (INIS)

Netz, R.; Sauerbrey, R.; Feurer, T.; Roberts, G.

2002-01-01

This work explores temporal and spatial aspects of coherent population transfer in a three-level atom through a synergic combination of experimental measurements and theoretical calculations. Experimental measurements exploit the broad bandwidth of a femtosecond laser pulse to initiate simultaneous excitation of the 5p 2 P 1/2 2 S 1/2 and 5p 2 P 3/2 2 S 1/2 components of the doublet line of atomic rubidium. By adjusting positive or negative frequency sweeps the pump pulse favors either one of the two transitions and eventually even decouples the two excited states. The population of the excited spin-orbit levels is monitored in real time by stimulated emission probing under conditions of different intensity, chirp, and pulse width of the driving field, giving detailed information on the coupling between the three levels and their interactions with the driving and probe fields at different points in spacetime. Both pump and probe pulses are carefully characterized after the interaction region by frequency-resolved optical gating. In order to interpret and understand the experimental results it is essential to consider the close relationship between pulse propagation and time evolution of the atomic system via the coupled Maxwell-Bloch equations. This analysis highlights the importance of spatial propagation of the light fields, as well as their temporal dependence, in understanding the dynamical population evolution, and quantitatively reproduces all aspects of the experimental measurements

Factors affecting the frequency of infection by the sigma virus in experimental populations of Drosophila melanogaster.

Science.gov (United States)

Fleuriet, A

1982-01-01

The experiments reported in this paper deal with the maintenance of the non contagious, hereditary virus sigma in populations of its host, Drosophila melanogaster. Evidence was previously provided of the existence of two viral Types I and II, depending on their sensitivity to the ref(2)Pp allele (the ref(2)P locus interferes with the multiplication of the virus in the fly). The viral Type I which is the most sensitive to the ref(2)Pp allele, is eliminated in the presence of this allele, even when most of the flies were originally infected in the population. On the contrary, the presence of the ref(2)Pp allele does not prevent a viral Type II, introduced in a population, from infecting most of the flies. The possibility that a change has occurred recently in French natural populations of Drosophila melanogaster is discussed.

Epizootic Pneumonia of Bighorn Sheep following Experimental Exposure to Mycoplasma ovipneumoniae

OpenAIRE

Besser, Thomas E.; Cassirer, E. Frances; Potter, Kathleen A.; Lahmers, Kevin; Oaks, J. Lindsay; Shanthalingam, Sudarvili; Srikumaran, Subramaniam; Foreyt, William J.

2014-01-01

BACKGROUND: Bronchopneumonia is a population limiting disease of bighorn sheep (Ovis canadensis). The cause of this disease has been a subject of debate. Leukotoxin expressing Mannheimia haemolytica and Bibersteinia trehalosi produce acute pneumonia after experimental challenge but are infrequently isolated from animals in natural outbreaks. Mycoplasma ovipneumoniae, epidemiologically implicated in naturally occurring outbreaks, has received little experimental evaluation as a primary agent o...

An experimental study for the reduction of population dose

International Nuclear Information System (INIS)

Muroi, Makoto

1984-01-01

It is a well-known fact that to reduce the amount of X-ray exposure, it is absolutely necessary to limit the field size to the minimum needed for the purpose of examination and size of the object. However, as dental X-ray apparatuses are not fitted with movable collimators, a fixed field size is applied to all exposures of intraoral radiography that is most frequently used for the dental region. Therefore, as one means of reducing the field size, the development of a changeable diaphragm for use in intraoral radiography has been undertaken. Also measurements were made of critical organ doses by field size and a nationwide survey was carried out to ascertain the frequency of intraoral radiography, through which review was made of the degree of contribution the changeable diaphragm could bring about in reducing the population dose. Much effort has led to success in the building of a changeable diaphragm into a central ray indicating cone which permits easy tube head alignment and maintenace of a set focus-skin distance. It was also found that approximately 50% of all intraoral radiography performed in Japan could have been accomplished by smaller field sizes. (author)

A review of population data utilization in beef cattle research.

Science.gov (United States)

Jones, R; Langemeier, M

2010-04-01

Controlled experimentation has been the most common source of research data in most biological sciences. However, many research questions lend themselves to the use of population data, or combinations of population data and data resulting from controlled experimentation. Studies of important economic outcomes, such as efficiency, profits, and costs, lend themselves particularly well to this type of analysis. Analytical methods that have been most commonly applied to population data in studies related to livestock production and management include statistical regression and mathematical programming. In social sciences, such as applied economics, it has become common to utilize more than one method in the same study to provide answers to the various questions at hand. Of course, care must be taken to ensure that the methods of analysis are appropriately applied; however, a wide variety of beef industry research questions are being addressed using population data. Issues related to data sources, aggregation levels, and consistency of collection often surface when using population data. These issues are addressed by careful consideration of the questions being addressed and the costs of data collection. Previous research across a variety of cattle production and marketing issues provides a broad foundation upon which to build future research. There is tremendous opportunity for increased use of population data and increased collaboration across disciplines to address issues of importance to the cattle industry.

Measuring inequity aversion in a heterogeneous population using experimental decisions and subjective probabilities

NARCIS (Netherlands)

Bellemare, C.; Kroger, S.; van Soest, A.H.O.

2008-01-01

We combine choice data in the ultimatum game with the expectations of proposers elicited by subjective probability questions to estimate a structural model of decision making under uncertainty. The model, estimated using a large representative sample of subjects from the Dutch population, allows

High coffee population density to improve fertility of an oxisol

OpenAIRE

Pavan,Marcos Antonio; Chaves,Júlio César Dias; Siqueira,Rubens; Androcioli Filho,Armando; Colozzi Filho,Arnaldo; Balota,Elcio Liborio

1999-01-01

The objective of this work was to evaluate the effect of coffee (Coffea arabica L.) population densities on the chemical and microbiological properties of an Oxisol. The work was carried out on soil samples of 0-20 cm depth originated from an experimental site which had been used for coffee tree spacing studies during 15 years, in Paraná State, Brazil. Eight coffee tree populations were evaluated: 7143, 3571, 2381, 1786, 1429, 1190, 1020, and 893 trees/ha. Increasing plant population increase...

Population inversion in a stationary recombining plasma

International Nuclear Information System (INIS)

Otsuka, M.

1980-01-01

Population inversion, which occurs in a recombining plasma when a stationary He plasma is brought into contact with a neutral gas, is examined. With hydrogen as a contact gas, noticeable inversion between low-lying levels of H as been found. The overpopulation density is of the order of 10 8 cm -3 , which is much higher then that (approx. =10 5 cm -3 ) obtained previously with He as a contact gas. Relations between these experimental results and the conditions for population inversion are discussed with the CR model

Experimental ecology of selected vertebrate species. Final report

International Nuclear Information System (INIS)

Hartman, R.T.; Graybill, D.L.

1976-08-01

This report summarizes the results of a long term (1960 to 1973) study designed to determine the suitability of various vertebrate species for experimental radioecology, to determine their individual and population characteristics under natural conditions, and to utilize these characteristics to gauge the effects of sub-lethal doses of gamma radiation. The study focused on free ranging populations of Tamias striatus in northwestern Pennsylvania and Thomomys talpoides in northwestern Wyoming. Results of the study were collated with those of a concurrent and cooperative study of populations of Tamias striatus in southern Vermont. Major achievements of the study included: the discovery that single insults of 200 R and 400 R of gamma radiation decreased the rate of disappearance of individuals from populations of Tamias striatus and Thomomys talpoides so treated, and resulted in a reduction in home range size in a population of Tamias striatus in which the average range of males was quite large; the construction and analysis of life tables which were based on more than 80,000 captures of Tamias striatus and Thomomys talpoides; and the construction and analysis of correlation coefficients relating annual mast production and Tamias striatus population parameters for 26 annual cycle/population combinations

An Improved Real-Coded Population-Based Extremal Optimization Method for Continuous Unconstrained Optimization Problems

Directory of Open Access Journals (Sweden)

Guo-Qiang Zeng

2014-01-01

Full Text Available As a novel evolutionary optimization method, extremal optimization (EO has been successfully applied to a variety of combinatorial optimization problems. However, the applications of EO in continuous optimization problems are relatively rare. This paper proposes an improved real-coded population-based EO method (IRPEO for continuous unconstrained optimization problems. The key operations of IRPEO include generation of real-coded random initial population, evaluation of individual and population fitness, selection of bad elements according to power-law probability distribution, generation of new population based on uniform random mutation, and updating the population by accepting the new population unconditionally. The experimental results on 10 benchmark test functions with the dimension N=30 have shown that IRPEO is competitive or even better than the recently reported various genetic algorithm (GA versions with different mutation operations in terms of simplicity, effectiveness, and efficiency. Furthermore, the superiority of IRPEO to other evolutionary algorithms such as original population-based EO, particle swarm optimization (PSO, and the hybrid PSO-EO is also demonstrated by the experimental results on some benchmark functions.

Dynamics of intraocular IFN-γ, IL-17 and IL-10-producing cell populations during relapsing and monophasic rat experimental autoimmune uveitis.

Directory of Open Access Journals (Sweden)

Ulrike Kaufmann

Full Text Available A major limitation of most animal models of autoimmune diseases is that they do not reproduce the chronic or relapsing-remitting pattern characteristic of many human autoimmune diseases. This problem has been overcome in our rat models of experimentally induced monophasic or relapsing-remitting autoimmune uveitis (EAU, which depend on the inducing antigen peptides from retinal S-Antigen (monophasic EAU or interphotoreceptor retinoid-binding protein (relapsing EAU. These models enable us to compare autoreactive and regulatory T cell populations. Intraocular, but not peripheral T cells differ in their cytokine profiles (IFN-γ, IL-17 and IL-10 at distinct time points during monophasic or relapsing EAU. Only intraocular T cells concomitantly produced IFN-γ, IL-17 and/or IL-10. Monophasic EAU presented rising numbers of cells expressing IFN-γ and IL-17 (Th1/Th17 and cells expressing IL-10 or Foxp3. During relapsing uveitis an increase of intraocular IFN-γ+ cells and a concomitant decrease of IL-17+ cells was detected, while IL-10+ populations remained stable. Foxp3+ cells and cells expressing IL-10, even in combination with IFN-γ or IL-17, increased during the resolution of monophasic EAU, suggesting a regulatory role for these T cells. In general, cells producing multiple cytokines increased in monophasic and decreased in relapsing EAU. The distinct appearance of certain intraocular populations with characteristics of regulatory cells points to a differential influence of the ocular environment on T cells that induce acute and monophasic or relapsing disease. Here we provide evidence that different autoantigens can elicit distinct and differently regulated immune responses. IFN-γ, but not IL-17 seems to be the key player in relapsing-remitting uveitis, as shown by increased, synchronized relapses after intraocular application of IFN-γ. We demonstrated dynamic changes of the cytokine pattern during monophasic and relapsing-remitting disease

Project ZEUS: a field irradiator for small-mammal population studies

International Nuclear Information System (INIS)

Turner, B.N.; Iverson, S.L.

1976-08-01

The ZEUS (Zoological Environment Under Stress) Project will assess the effects of long-term low-level radiation on meadow vole populations in a northern temperate area through a series of replicated experimental irradiations. These rodent populations will live in grassland areas surrounded by forest, and will be exposed to a dose designed to be a maximum 6 R/day. (author)

Study of the role of biotic and abiotic factors in modifying metal accumulation by Chironomus (Diptera: Chironomidae)

Energy Technology Data Exchange (ETDEWEB)

Krantzberg, G.B.

1987-01-01

The author examined the variability in metal bioaccumulation by chironomids collected from sites that differed in the extent of metal and acid loadings. Bioaccumulation by Chironomus was related to both biotic and abiotic factors. Metal accumulation was age and weight dependent. Aluminum, Ca, and Fe concentrations increased with age, Cd and Ni decreased, and Cu, Mn, Pb, and Zn remained constant with age. Calcium, Fe, and Ni concentration increased with weight, Cd decrease, and Cu, Mn, and Zn remained constant with weight. Age and weight effects on metal accumulation were identified as a potential source of spacial and temporal variability in tissue concentrations. Metal regulation differed between populations of Chironomus. Lead and Cd were not regulated, Zn was regulated, and larvae from a Cu and Ni contaminated system appeared to regulate Cu and Ni. X-ray probe microanalysis provided further support that metal metabolism differed between population, and results from laboratory experiments suggested that populations differed in relation to metal tolerance. There was evidence that pH modified metal accumulation.

78 FR 4813 - Endangered and Threatened Wildlife and Plants; Establishment of a Nonessential Experimental...

Science.gov (United States)

2013-01-23

.... Before authorizing the release as an experimental population of any population (including eggs... removal of individuals, eggs, or propagules for introduction elsewhere; (2) the likelihood that any such... introduction of orangespotted sunfish (Cook 2011, pers. comm.). Topeka shiners feed primarily on insects, such...

Light slow-down in semiconductor waveguides due to population pulsations

DEFF Research Database (Denmark)

Mørk, Jesper; Kjær, Rasmus; Poel, Mike van der

2005-01-01

This study theoretically analyzes the prospect of inducing light-slow down in a semiconductor waveguide based on coherent population oscillation. Experimental observations of the effect are also presented....

Influence of Erroneous Patient Records on Population Pharmacokinetic Modeling and Individual Bayesian Estimation

NARCIS (Netherlands)

van der Meer, Aize Franciscus; Touw, Daniel J.; Marcus, Marco A. E.; Neef, Cornelis; Proost, Johannes H.

2012-01-01

Background: Observational data sets can be used for population pharmacokinetic (PK) modeling. However, these data sets are generally less precisely recorded than experimental data sets. This article aims to investigate the influence of erroneous records on population PK modeling and individual

Experimental evidence for convergent evolution of maternal care heuristics in industrialized and small-scale populations.

Science.gov (United States)

Kushnick, Geoff; Hanowell, Ben; Kim, Jun-Hong; Langstieh, Banrida; Magnano, Vittorio; Oláh, Katalin

2015-06-01

Maternal care decision rules should evolve responsiveness to factors impinging on the fitness pay-offs of care. Because the caretaking environments common in industrialized and small-scale societies vary in predictable ways, we hypothesize that heuristics guiding maternal behaviour will also differ between these two types of populations. We used a factorial vignette experiment to elicit third-party judgements about likely caretaking decisions of a hypothetical mother and her child when various fitness-relevant factors (maternal age and access to resources, and offspring age, sex and quality) were varied systematically in seven populations-three industrialized and four small-scale. Despite considerable variation in responses, we found that three of five main effects, and the two severity effects, exhibited statistically significant industrialized/ small-scale population differences. All differences could be explained as adaptive solutions to industrialized versus small-scale caretaking environments. Further, we found gradients in the relationship between the population-specific estimates and national-level socio-economic indicators, further implicating important aspects of the variation in industrialized and small-scale caretaking environments in shaping heuristics. Although there is mounting evidence for a genetic component to human maternal behaviour, there is no current evidence for interpopulation variation in candidate genes. We nonetheless suggest that heuristics guiding maternal behaviour in diverse societies emerge via convergent evolution in response to similar selective pressures.

Diet and habitat use by age-0 deepwater sculpins in northern Lake Huron, Michigan and the Detroit River

Science.gov (United States)

Roseman, Edward F.

2014-01-01

Deepwater sculpins (Myoxocephalus thompsonii) are an important link in deepwater benthic foodwebs of the Great Lakes. Little information exists about deepwater sculpin spawning habits and early life history ecology due to difficulty in sampling deep offshore habitats. Larval and age-0 deepwater sculpins collected in northern Lake Huron and the Detroit River during 2007 were used to improve our understanding of their habitat use, diet, age, and growth. Peak larval density reached 8.4/1000 m3 in the Detroit River during April and was higher than that in Lake Huron. Offshore bottom trawls at DeTour and Hammond Bay first collected benthic age-0 deepwater sculpins in early September when fish were ≥ 25 mm TL. Otolith analysis revealed that hatch dates for pelagic larvae occurred during late March and larvae remained pelagic for 40 to 60 days. Diet of pelagic larvae (10–21 mm TL) was dominated by calanoid copepods at all sample locations. Diets of benthic age-0 fish varied by location and depth: Mysis and chironomids were prevalent in fish from Hammond Bay and the 91 m site at DeTour, but only chironomids were found in fish from the 37 m DeTour site. This work showed that nearshore epilimnetic sites were important for pelagic larvae and an ontogenetic shift from pelagic planktivore to benthivore occurred at about 25 mm TL in late summer. Age analysis showed that larvae remained pelagic long enough to be transported through the St. Clair–Detroit River system, Lake Erie, and the Niagara River, potentially contributing to populations in Lake Ontario.

Interactions among zebra mussel shells, invertebrate prey, and Eurasian ruffe or yellow perch

Science.gov (United States)

Kolar, C.S.; Fullerton, A.H.; Martin, K.M.; Lamberti, G.A.

2002-01-01

The exotic zebra mussel, Dreissena polymorpha, is established in all of the Laurentian Great Lakes and may affect benthivorous fishes by increasing the complexity of benthic substrates and changing energy flow patterns within the food web. Native yellow perch, Perca flavescens, and the nonindigenous Eurasian ruffe, Gymnocephalus cernuus, are benthivores that may compete for limited food resources. As ruffe spread to areas with more dense zebra mussel populations, the zone of interaction among zebra mussels, yellow perch, and ruffe will increase and intensify. In the laboratory, the effect of zebra mussel shells on the ability of these fishes to forage on amphipods (Gammarus pseudolimnaeus) and chironomids (Chironomus plumosus) was examined in light and darkness. In 12 h, ruffe consumed more amphipods than did similar-sized yellow perch, particularly in darkness on bare cobble, and in light within zebra mussels. Amphipods decreased activity more in the presence of ruffe than yellow perch. More amphipods were found in zebra mussel shells than in bare cobble, whether or not fish were present. In darkness, when ruffe consumed more amphipods on bare cobble, amphipods became more associated with zebra mussel shells. Although ruffe consumed more amphipods than yellow perch, perch consumed more chironomids than ruffe on bare cobble. The presence of zebra mussel shells altered the relative consumption of invertebrates in some substrate-light combinations. Experiments such as these help to improve understanding of the direct and indirect effects of predation between and among native and nonindigenous species that may exert structuring forces on the nearshore communities of the Great Lakes currently or in the future.

Changing perspectives on the importance of urban phosphorus inputs as the cause of nutrient enrichment in Lough Neagh.

Science.gov (United States)

Foy, R H; Lennox, S D; Gibson, C E

2003-07-01

The scale and chronology of the phosphorus (P) enrichment of Lough Neagh, a large hypertrophic lake, was assessed using, as enrichment proxies, published palaeocological studies on diatoms and chironomid head capsules preserved in the lake sediments and, from 1974, monitoring data from the lake and its inflowing rivers. Enrichment commenced in 1880, and the scale and chronology of the diatom and chironomid records were similar up to 1960, but in the 1960s, chironomid accumulation rates increased dramatically, whereas diatom rates remained unchanged. From subsequent lake monitoring, the absence of a diatom response after 1960 was attributed to silica limitation so that P could be considered as the driver of increased diatom production only up to 1960. Using a coefficient for the demand for P by diatoms of 4 microg P mg SiO(2)(-1), it was calculated that the increased diatom production between 1881 and 1961 required an increase in lake P of 26 microg P l(-1). This value is close to the predicted increase of 22.5 microg P l(-1) in the lake caused by inputs of P from sewage treatment works and septic tanks. There was no evidence that diffuse source P contributed to enrichment over this period. Enrichment up to 1960 appears modest in comparison to subsequent years. From 1961 to 1974, lake P was estimated to have increased by 62 microg P l(-1), but only 25 microg P l(-1) of this increase was attributable to greater loadings of P from urban and septic tank sources. The enrichment response of chironomids at this time was also much greater than expected from a regression-derived relationship between urban P inputs and chironomid accumulation rates suggesting additional sources of P. The larger than expected increase in lake P was attributed to the onset of a significant internal loading of P and the commencement of an increase in diffuse source loadings of P. River monitoring has shown that diffuse P has increased steadily since 1974, more than counterbalancing a 40

Grand challenges in evolutionary and population genetics: The importance of integrating epigenetics, genomics, modeling, and experimentation

Science.gov (United States)

Samuel A. Cushman

2014-01-01

This is a time of explosive growth in the fields of evolutionary and population genetics, with whole genome sequencing and bioinformatics driving a transformative paradigm shift (Morozova and Marra, 2008). At the same time, advances in epigenetics are thoroughly transforming our understanding of evolutionary processes and their implications for populations, species and...

Itinerant ferromagnetism in an atomic Fermi gas: Influence of population imbalance

International Nuclear Information System (INIS)

Conduit, G. J.; Simons, B. D.

2009-01-01

We investigate ferromagnetic ordering in an itinerant ultracold atomic Fermi gas with repulsive interactions and population imbalance. In a spatially uniform system, we show that at zero temperature the transition to the itinerant magnetic phase transforms from first to second order with increasing population imbalance. Drawing on these results, we elucidate the phases present in a trapped geometry, finding three characteristic types of behavior with changing population imbalance. Finally, we outline the potential experimental implications of the findings.

Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from Two Oahu (Hawaii) populations.

Science.gov (United States)

Wollenberg, M S; Ruby, E G

2009-01-01

We resolved the intraspecific diversity of Vibrio fischeri, the bioluminescent symbiont of the Hawaiian sepiolid squid Euprymna scolopes, at two previously unexplored morphological and geographical scales. These scales ranged from submillimeter regions within the host light organ to the several kilometers encompassing two host populations around Oahu. To facilitate this effort, we employed both novel and standard genetic and phenotypic assays of light-organ symbiont populations. A V. fischeri-specific fingerprinting method and five phenotypic assays were used to gauge the genetic richness of V. fischeri populations; these methods confirmed that the symbiont population present in each adult host's light organ is polyclonal. Upon statistical analysis of these genetic and phenotypic population data, we concluded that the characteristics of symbiotic populations were more similar within individual host populations than between the two distinct Oahu populations of E. scolopes, providing evidence that local geographic symbiont population structure exists. Finally, to better understand the genesis of symbiont diversity within host light organs, the process of symbiosis initiation in newly hatched juvenile squid was examined both experimentally and by mathematical modeling. We concluded that, after the juvenile hatches, only one or two cells of V. fischeri enter each of six internal epithelium-lined crypts present in the developing light organ. We hypothesize that the expansion of different, crypt-segregated, clonal populations creates the polyclonal adult light-organ population structure observed in this study. The stability of the luminous-bacterium-sepiolid squid mutualism in the presence of a polyclonal symbiont population structure is discussed in the context of contemporary evolutionary theory.

Seasonal Variability of Phytoplankton Population in the Brahmani ...

African Journals Online (AJOL)

Seasonal Variability of Phytoplankton Population in the Brahmani Estuary of Orissa, India. S Palleyi, RN Kar, CR Panda. Abstract. The dynamic relationship of water physico-chemical characteristics with phytoplankton has long been of great interest in both experimental ecology and environmental management. This study ...

Observation of coherent population transfer in a four-level tripod system with a rare-earth-metal-ion-doped crystal

International Nuclear Information System (INIS)

Goto, Hayato; Ichimura, Kouichi

2007-01-01

Coherent population transfer in a laser-driven four-level system in a tripod configuration is experimentally investigated with a rare-earth-metal-ion-doped crystal (Pr 3+ :Y 2 SiO 5 ). The population transfers observed here indicate that a main process inducing them is not optical pumping, which is an incoherent process inducing population transfer. Moreover, numerical simulation, which well reproduces the experimental results, also shows that the process inducing the observed population transfers is similar to stimulated Raman adiabatic passage (STIRAP) in the sense that this process possesses characteristic features of STIRAP

Spider-mediated flux of PCBs from contaminated sediments to terrestrial ecosystems and potential risks to arachnivorous birds

Science.gov (United States)

We investigated aquatic insect utilization and PCB exposure in riparian spiders at the Lake Hartwell superfund site (Clemson, SC , USA). We sampled sediments, adult chironomids, terrestrial insects, riparian spiders (Tetragnathidae, Araneidae, and Mecynogea lemniscata), and upla...

76 FR 28715 - Endangered and Threatened Species: Designation of a Nonessential Experimental Population for...

Science.gov (United States)

2011-05-18

... Portal: http://www.regulations.gov . Follow the instructions for submitting comments. Mail: Submit... removal. In this case, the donor steelhead are from a captive bred population, which is propagated to... implementation of [[Page 28721

Inferring infection hazard in wildlife populations by linking data across individual and population scales

Science.gov (United States)

Pepin, Kim M.; Kay, Shannon L.; Golas, Ben D.; Shriner, Susan A.; Gilbert, Amy T.; Miller, Ryan S.; Graham, Andrea L.; Riley, Steven; Cross, Paul C.; Samuel, Michael D.; Hooten, Mevin B.; Hoeting, Jennifer A.; Lloyd-Smith, James O.; Webb, Colleen T.; Buhnerkempe, Michael G.

2017-01-01

Our ability to infer unobservable disease-dynamic processes such as force of infection (infection hazard for susceptible hosts) has transformed our understanding of disease transmission mechanisms and capacity to predict disease dynamics. Conventional methods for inferring FOI estimate a time-averaged value and are based on population-level processes. Because many pathogens exhibit epidemic cycling and FOI is the result of processes acting across the scales of individuals and populations, a flexible framework that extends to epidemic dynamics and links within-host processes to FOI is needed. Specifically, within-host antibody kinetics in wildlife hosts can be short-lived and produce patterns that are repeatable across individuals, suggesting individual-level antibody concentrations could be used to infer time since infection and hence FOI. Using simulations and case studies (influenza A in lesser snow geese and Yersinia pestis in coyotes), we argue that with careful experimental and surveillance design, the population-level FOI signal can be recovered from individual-level antibody kinetics, despite substantial individual-level variation. In addition to improving inference, the cross-scale quantitative antibody approach we describe can reveal insights into drivers of individual-based variation in disease response, and the role of poorly understood processes such as secondary infections, in population-level dynamics of disease.

Reproductive isolation among allopatric Drosophila montana populations.

Science.gov (United States)

Jennings, Jackson H; Snook, Rhonda R; Hoikkala, Anneli

2014-11-01

An outstanding goal in speciation research is to trace the mode and tempo of the evolution of barriers to gene flow. Such research benefits from studying incipient speciation, in which speciation between populations has not yet occurred, but where multiple potential mechanisms of reproductive isolation (RI: i.e., premating, postmating-prezygotic (PMPZ), and postzygotic barriers) may act. We used such a system to investigate these barriers among allopatric populations of Drosophila montana. In all heteropopulation crosses we found premating (sexual) isolation, which was either symmetric or asymmetric depending on the population pair compared. Postmating isolation was particularly strong in crosses involving males from one of the study populations, and while sperm were successfully transferred, stored, and motile, we experimentally demonstrated that the majority of eggs produced were unfertilized. Thus, we identified the nature of a PMPZ incompatibility. There was no evidence of intrinsic postzygotic effects. Measures of absolute and relative strengths of pre- and postmating barriers showed that populations differed in the mode and magnitude of RI barriers. Our results indicate that incipient RI among populations can be driven by different contributions of both premating and PMPZ barriers occurring between different population pairs and without the evolution of postzygotic barriers. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Investigating Climate Change and Reproduction: Experimental Tools from Evolutionary Biology

Directory of Open Access Journals (Sweden)

Oliver Y. Martin

2012-09-01

Full Text Available It is now generally acknowledged that climate change has wide-ranging biological consequences, potentially leading to impacts on biodiversity. Environmental factors can have diverse and often strong effects on reproduction, with obvious ramifications for population fitness. Nevertheless, reproductive traits are often neglected in conservation considerations. Focusing on animals, recent progress in sexual selection and sexual conflict research suggests that reproductive costs may pose an underestimated hurdle during rapid climate change, potentially lowering adaptive potential and increasing extinction risk of certain populations. Nevertheless, regime shifts may have both negative and positive effects on reproduction, so it is important to acquire detailed experimental data. We hence present an overview of the literature reporting short-term reproductive consequences of exposure to different environmental factors. From the enormous diversity of findings, we conclude that climate change research could benefit greatly from more coordinated efforts incorporating evolutionary approaches in order to obtain cross-comparable data on how individual and population reproductive fitness respond in the long term. Therefore, we propose ideas and methods concerning future efforts dealing with reproductive consequences of climate change, in particular by highlighting the advantages of multi-generational experimental evolution experiments.

Observation of inverted population levels in the FM-1 Spherator

International Nuclear Information System (INIS)

Suckewer, S.; Hawryluk, R.J.; Okabayashi, M.; Schmidt, J.A.

1976-04-01

Inversions in the populations of excited levels in hydrogen and HeII were observed in the FM-1 Spherator. The inversion increases strongly as the ratio of the decay time of the electron temperature to the decay time of the electron density was decreased. Time dependent numerical calculations of the populations were in good agreement with the experimental measurements. More general calculations for high Z hydrogen-like ions are discussed

Septic tank additive impacts on microbial populations.

Science.gov (United States)

Pradhan, S; Hoover, M T; Clark, G H; Gumpertz, M; Wollum, A G; Cobb, C; Strock, J

2008-01-01

Environmental health specialists, other onsite wastewater professionals, scientists, and homeowners have questioned the effectiveness of septic tank additives. This paper describes an independent, third-party, field scale, research study of the effects of three liquid bacterial septic tank additives and a control (no additive) on septic tank microbial populations. Microbial populations were measured quarterly in a field study for 12 months in 48 full-size, functioning septic tanks. Bacterial populations in the 48 septic tanks were statistically analyzed with a mixed linear model. Additive effects were assessed for three septic tank maintenance levels (low, intermediate, and high). Dunnett's t-test for tank bacteria (alpha = .05) indicated that none of the treatments were significantly different, overall, from the control at the statistical level tested. In addition, the additives had no significant effects on septic tank bacterial populations at any of the septic tank maintenance levels. Additional controlled, field-based research iswarranted, however, to address additional additives and experimental conditions.

Emergence of cytotoxic resistance in cancer cell populations*

Directory of Open Access Journals (Sweden)

Lorenzi Tommaso

2015-01-01

Full Text Available We formulate an individual-based model and an integro-differential model of phenotypic evolution, under cytotoxic drugs, in a cancer cell population structured by the expression levels of survival-potential and proliferation-potential. We apply these models to a recently studied experimental system. Our results suggest that mechanisms based on fundamental laws of biology can reversibly push an actively-proliferating, and drug-sensitive, cell population to transition into a weakly-proliferative and drug-tolerant state, which will eventually facilitate the emergence of more potent, proliferating and drug-tolerant cells.

A note on the diet and feeding selectivity of juvenile riverbream ...

African Journals Online (AJOL)

1990-05-15

May 15, 1990 ... The Mgeni estuary however, is one system where A. berda were found to be ... Figure 2 Salinity, temperature and turbidity data from Beachwood creek, November ..... pods, chironomid larvae, tanaids and small crabs, and from.

Ensembles of a small number of conformations with relative populations

Energy Technology Data Exchange (ETDEWEB)

Vammi, Vijay, E-mail: vsvammi@iastate.edu; Song, Guang, E-mail: gsong@iastate.edu [Iowa State University, Bioinformatics and Computational Biology Program, Department of Computer Science (United States)

2015-12-15

In our previous work, we proposed a new way to represent protein native states, using ensembles of a small number of conformations with relative Populations, or ESP in short. Using Ubiquitin as an example, we showed that using a small number of conformations could greatly reduce the potential of overfitting and assigning relative populations to protein ensembles could significantly improve their quality. To demonstrate that ESP indeed is an excellent alternative to represent protein native states, in this work we compare the quality of two ESP ensembles of Ubiquitin with several well-known regular ensembles or average structure representations. Extensive amount of significant experimental data are employed to achieve a thorough assessment. Our results demonstrate that ESP ensembles, though much smaller in size comparing to regular ensembles, perform equally or even better sometimes in all four different types of experimental data used in the assessment, namely, the residual dipolar couplings, residual chemical shift anisotropy, hydrogen exchange rates, and solution scattering profiles. This work further underlines the significance of having relative populations in describing the native states.

Genetic structure of populations of Drosophila melanogaster natives from Laguna Verde, Veracruz

International Nuclear Information System (INIS)

Salceda, V.M.

2005-01-01

The genetic variability hidden present in natural populations of Drosophila melanogaster, it has been broadly analyzed, and it is a tool that allows to detect differences among the different populations of this species, so much of natural nature as experimental. In this occasion we use it to see if differences exist in two neighboring populations inside the Laguna Verde nuclear power plant, Veracruz, and this way to suggest, of having differences in the mount of the relative frequencies of lethal genes, semi lethals and normal, be due to the radioactive emanations product of the reactors operation of the plant. Its were took samples of flies in both towns during three successive seasons and they were transported to the laboratory of the ININ where they were carried out the tests to determine the frequency of the different types of genes. This was made by means of the denominated technique C y L / Pm that allows by means of a cross series with a stump marker to obtain, in the third generation, in isolated form the different types of genes and this way to calculate their relative frequencies. The study understands the analysis of 299 chromosomes extracted from the populations, of those that 95 correspond at the control population and 204 to the experimental one. As a result of the analysis we find that 30.52 percent of the genes of the population witness contains detrimental genes (sum of the lethal plus the semi lethal genes) as long as in the experimental population this value corresponds to 23.03 percent. In accordance with this information was not significant difference among the studied populations. A similar analysis, but now comparing the seasons, (summer against winter), it showed significant difference to 5% with regard to the lethal genes frequency only in the population witness. These results indicate the absence of damage, however it is necessary to consider that this can be due to that indeed there is not him or that the investigation protocol is not

Towards a Population Dynamics Theory for Evolutionary Computing: Learning from Biological Population Dynamics in Nature

Science.gov (United States)

Ma, Zhanshan (Sam)

In evolutionary computing (EC), population size is one of the critical parameters that a researcher has to deal with. Hence, it was no surprise that the pioneers of EC, such as De Jong (1975) and Holland (1975), had already studied the population sizing from the very beginning of EC. What is perhaps surprising is that more than three decades later, we still largely depend on the experience or ad-hoc trial-and-error approach to set the population size. For example, in a recent monograph, Eiben and Smith (2003) indicated: "In almost all EC applications, the population size is constant and does not change during the evolutionary search." Despite enormous research on this issue in recent years, we still lack a well accepted theory for population sizing. In this paper, I propose to develop a population dynamics theory forEC with the inspiration from the population dynamics theory of biological populations in nature. Essentially, the EC population is considered as a dynamic system over time (generations) and space (search space or fitness landscape), similar to the spatial and temporal dynamics of biological populations in nature. With this conceptual mapping, I propose to 'transplant' the biological population dynamics theory to EC via three steps: (i) experimentally test the feasibility—whether or not emulating natural population dynamics improves the EC performance; (ii) comparatively study the underlying mechanisms—why there are improvements, primarily via statistical modeling analysis; (iii) conduct theoretical analysis with theoretical models such as percolation theory and extended evolutionary game theory that are generally applicable to both EC and natural populations. This article is a summary of a series of studies we have performed to achieve the general goal [27][30]-[32]. In the following, I start with an extremely brief introduction on the theory and models of natural population dynamics (Sections 1 & 2). In Sections 4 to 6, I briefly discuss three

Distribution of polychlorinated biphenyls in an urban riparian zone affected by wastewater treatment plant effluent and the transfer to terrestrial compartment by invertebrates.

Science.gov (United States)

Yu, Junchao; Wang, Thanh; Han, Shanlong; Wang, Pu; Zhang, Qinghua; Jiang, Guibin

2013-10-01

In this study, we investigated the distribution of polychlorinated biphenyls (PCBs) in a riparian zone affected by the effluent from a wastewater treatment plant (WWTP). River water, sediment, aquatic invertebrates and samples from the surrounding terrestrial compartment such as soil, reed plants and several land based invertebrates were collected. A relatively narrow range of δ(13)C values was found among most invertebrates (except butterflies, grasshoppers), indicating a similar energy source. The highest concentration of total PCBs was observed in zooplankton (151.1 ng/g lipid weight), and soil dwelling invertebrates showed higher concentrations than phytophagous insects at the riparian zone. The endobenthic oligochaete Tubifex tubifex (54.28 ng/g lw) might be a useful bioindicator of WWTP derived PCBs contamination. High bioaccumulation factors (BAFs) were observed in collected aquatic invertebrates, although the biota-sediment/soil accumulation factors (BSAF) remained relatively low. Emerging aquatic insects such as chironomids could carry waterborne PCBs to the terrestrial compartment via their lifecycles. The estimated annual flux of PCBs for chironomids ranged from 0.66 to 265 ng⋅m(-2)⋅y(-1). Although a high prevalence of PCB-11 and PCB-28 was found for most aquatic based samples in this riparian zone, the mid-chlorinated congeners (e.g. PCB-153 and PCB-138) became predominant among chironomids and dragonflies as well as soil dwelling invertebrates, which might suggest a selective biodriven transfer of different PCB congeners. Copyright © 2013 Elsevier B.V. All rights reserved.

Ammonium sulphate fertiliser increases larval populations of Anopheles arabiensis and culicine mosquitoes in rice fields

DEFF Research Database (Denmark)

Mutero, C M; Ng'ang'a, P N; Wekoyela, P

2004-01-01

Field experiments were conducted in central Kenya, to study the effect of ammonium sulphate fertiliser ((NH(4))(2)SO(4)) on mosquito larval populations in rice fields. The experiments used a complete randomised block design having four blocks with two experimental ponds per block, and the fertili......Field experiments were conducted in central Kenya, to study the effect of ammonium sulphate fertiliser ((NH(4))(2)SO(4)) on mosquito larval populations in rice fields. The experiments used a complete randomised block design having four blocks with two experimental ponds per block...... populations of An. arabiensis (Pmosquitoes (P... in rice fields, thereby making them visually more attractive for egg-laying by An. arabiensis and culicine mosquitoes....

78 FR 7890 - Endangered and Threatened Wildlife and Plants; Establishment of a Nonessential Experimental...

Science.gov (United States)

2013-02-04

... experimental population (including eggs, propagules, or individuals) of an endangered or threatened species... possible adverse effects on extant populations of a species as a result of removal of individuals, eggs, or...; Tomasik and Cook 2005, p. 390; Cegelski et al. 2006, p. 206; Aubry et al. 2011, pp. 21-22; Inman et al...

Experimental evidence for density dependence of reproduction in great tits

NARCIS (Netherlands)

Both, C.

1998-01-01

1. Density dependence of avian reproduction has often been analysed using correlations between annual mean reproductive output and population density. Experiments are necessary to prove that density is the cause of the observed patterns, but so far, three out of four experimental studies do not

Location Aggregation of Spatial Population CTMC Models

Directory of Open Access Journals (Sweden)

Luca Bortolussi

2016-10-01

Full Text Available In this paper we focus on spatial Markov population models, describing the stochastic evolution of populations of agents, explicitly modelling their spatial distribution, representing space as a discrete, finite graph. More specifically, we present a heuristic approach to aggregating spatial locations, which is designed to preserve the dynamical behaviour of the model whilst reducing the computational cost of analysis. Our approach combines stochastic approximation ideas (moment closure, linear noise, with computational statistics (spectral clustering to obtain an efficient aggregation, which is experimentally shown to be reasonably accurate on two case studies: an instance of epidemic spreading and a London bike sharing scenario.

Lake Ecosystem Responses to Holocene Climate Change at the Subarctic Tree-Line in Northern Sweden

DEFF Research Database (Denmark)

Reuss, Nina Steenberg; Hammarlund, Dan; Rundgren, Mats

2010-01-01

sedimentary pigments, diatoms, chironomids, pollen, biogenic silica (BSi), carbon (C), nitrogen (N) elemental and stable-isotope records, and total lake-water organic carbon (TOC) concentration inferred from near-infrared spectroscopy (NIRS), suggest that the Holocene development of Lake Seukokjaure...

On Using Model Populations to Determine Mechanical Properties of Skeletal Muscle. Application to Concentric Contraction Simulation.

Science.gov (United States)

Sierra, M; Miana-Mena, F J; Calvo, B; Muñoz, M J; Rodríguez, J F; Grasa, J

2015-10-01

In the field of computational biomechanics, the experimental evaluation of the material properties is crucial for the development of computational models that closely reproduce real organ systems. When simulations of muscle tissue are concerned, stress/strain relations for both passive and active behavior are required. These experimental relations usually exhibit certain variability. In this study, a set of material parameters involved in a 3D skeletal muscle model are determined by using a system biology approach in which the parameters are randomly varied leading to a population of models. Using a set of experimental results from an animal model, a subset of the entire population of models was selected. This reduced population predicted the mechanical response within the window of experimental observations. Hence, a range of model parameters, instead of a single set of them, was determined. Rat Tibialis Anterior muscle was selected for this study. Muscles ([Formula: see text]) were activated through the sciatic nerve and during contraction the tissue pulled a weight fixed to the distal tendon (concentric contraction). Three different weights 1, 2 and 3 N were used and the time course of muscle stretch was analyzed obtaining values of (mean [Formula: see text] standard deviation): [Formula: see text], [Formula: see text] and [Formula: see text] respectively. A paired two-sided sign rank test showed significant differences between the muscle response for the three weights ([Formula: see text]). This study shows that the Monte Carlo method could be used for determine muscle characteristic parameters considering the variability of the experimental population.

Experimental evidence for density dependence of reproduction in great tits

NARCIS (Netherlands)

Both, Christiaan

1998-01-01

1.  Density dependence of avian reproduction has often been analysed using correlations between annual mean reproductive output and population density. Experiments are necessary to prove that density is the cause of the observed patterns, but so far, three out of four experimental studies do not

Invloed van inundatie van graslanden op terrestrische dansmuggen (Diptera: Chironomidae)

NARCIS (Netherlands)

Moller Pilot, H.

2005-01-01

Influence of flooding on terrestrial chironomids in grassland (Diptera: Chironomidae) Although flooding is an important factor for the invertebrate fauna of grassland, not much is published on this topic. As in other groups the different species of terrestrial Chironomidae display different

78 FR 2893 - Endangered and Threatened Species: Designation of a Nonessential Experimental Population for...

Science.gov (United States)

2013-01-15

.... mykiss exhibits perhaps the most complex suite of life history traits of any species of Pacific salmonid... functions that support the viability of populations and their primary life history strategies throughout... conservation measures in a time certain fashion versus the potential for some harm and determined that, on...

Population-expression models of immune response

International Nuclear Information System (INIS)

Stromberg, Sean P; Antia, Rustom; Nemenman, Ilya

2013-01-01

The immune response to a pathogen has two basic features. The first is the expansion of a few pathogen-specific cells to form a population large enough to control the pathogen. The second is the process of differentiation of cells from an initial naive phenotype to an effector phenotype which controls the pathogen, and subsequently to a memory phenotype that is maintained and responsible for long-term protection. The expansion and the differentiation have been considered largely independently. Changes in cell populations are typically described using ecologically based ordinary differential equation models. In contrast, differentiation of single cells is studied within systems biology and is frequently modeled by considering changes in gene and protein expression in individual cells. Recent advances in experimental systems biology make available for the first time data to allow the coupling of population and high dimensional expression data of immune cells during infections. Here we describe and develop population-expression models which integrate these two processes into systems biology on the multicellular level. When translated into mathematical equations, these models result in non-conservative, non-local advection-diffusion equations. We describe situations where the population-expression approach can make correct inference from data while previous modeling approaches based on common simplifying assumptions would fail. We also explore how model reduction techniques can be used to build population-expression models, minimizing the complexity of the model while keeping the essential features of the system. While we consider problems in immunology in this paper, we expect population-expression models to be more broadly applicable. (paper)

Population characteristics and assessment of overfishing for an exploited paddlefish population in the lower Tennessee River

Science.gov (United States)

Scholten, G.D.; Bettoli, P.W.

2005-01-01

Paddlefish Polyodon spathula (n = 576) were collected from Kentucky Lake, Kentucky-Tennessee, with experimental gill nets in 2003-2004 to assess population characteristics and the potential for commercial overfishing. Additional data were collected from 1,039 paddlefish caught by commercial gillnetters in this impoundment. Since the most recent study in 1991, size and age structure have been reduced and annual mortality has tripled. In the 1991 study, 37% of the fish collected were older than the maximum age we observed (age 11), and in 2003 annual mortality for paddlefish age 7 and older was high (A = 68%). Natural mortality is presumably low (overfishing probably occurs during drought years; however, variation in river discharge has prevented the population from being exploited at unsustainable rates in the past. ?? Copyright by the American Fisheries Society 2005.

Differential response of two sourgrass populations to glyphosate

Directory of Open Access Journals (Sweden)

São Paulo State University, Jaboticabal, SP, Brazil

2013-02-01

Full Text Available The repetitive use of glyphosate may cause increase on the resistance of sourgrass (Digitaria insularis through mechanisms of natural selection. The aim of this study was to verify the response of two populations of sourgrass (one collected from nonagricultural area and the other one from area suspected of glyphosate resistance to increasing doses of glyphosate. The experimental design was completely randomized with four repetitions. For both populations, glyphosate was sprayed at 10 doses (0D, D/16, D/8, D/4, D/2, D, 2D, 4D, 8D, and 16D; so that D is the dose of 1.08 kg e.a. ha-1. The treatments were sprayed when the plants had shown 3-5 tillers. The population collected in the nonagricultural area was slightly more sensible to the herbicide glyphosate than the population originated from an area where the herbicide application is common, not indicating glyphosate resistance.

A Possible Population-Driven Phase Transition in Cicada Chorus

International Nuclear Information System (INIS)

Gu Siyuan; Jin Yuliang; Zhao Xiaoxue; Huang Jiping

2009-01-01

We investigate the collective synchronization of cicada chirping. Using both experimental and phenomenological numerical techniques, here we show that the onset of a periodic two-state acoustic synchronous behavior in cicada chorus depends on a critical size of population N c = 21, above which a typical chorus state appears periodically with a 30 second-silence state in between, and further clarify its possibility concerning a new class of phase transition, which is unusually driven by population. This work has relevance to acoustic synchronization and to general physics of phase transition. (general)

78 FR 79622 - Endangered and Threatened Species: Designation of a Nonessential Experimental Population of...

Science.gov (United States)

2013-12-31

... identifying fish that are reintroduced, such as marking fish with specific fin clips (e.g., coded-wire tags... population area that have intact adipose fins as well as those that are adipose fin-clipped. In addition, the... thereby impact water supply. NMFS will develop a technical memorandum (tech memo) annually containing a...

Solar-Diesel Hybrid Power System Optimization and Experimental Validation

Science.gov (United States)

Jacobus, Headley Stewart

As of 2008 1.46 billion people, or 22 percent of the World's population, were without electricity. Many of these people live in remote areas where decentralized generation is the only method of electrification. Most mini-grids are powered by diesel generators, but new hybrid power systems are becoming a reliable method to incorporate renewable energy while also reducing total system cost. This thesis quantifies the measurable Operational Costs for an experimental hybrid power system in Sierra Leone. Two software programs, Hybrid2 and HOMER, are used during the system design and subsequent analysis. Experimental data from the installed system is used to validate the two programs and to quantify the savings created by each component within the hybrid system. This thesis bridges the gap between design optimization studies that frequently lack subsequent validation and experimental hybrid system performance studies.

Changes in spermatid population of mice following radiation exposure in the presence of a Thiophosphate

International Nuclear Information System (INIS)

Jaimala, H.; Bhartiya, C.

1987-01-01

Adult Swiss albino mice were exposed to 3, 6 and 8 Gy of 60 Co gamma rays in three separate groups after i.p. injection of a thiophosphate compound (WR-2721) in aqueous solution. Another group of animals was irradiated similary without WR-2721 pretreatment for comparative study. Animals from both groups were killed at various post-irradiation intervals. Testes were removed, fixed in the Bouins's fluid, paraffin section were cut and stained with PAS-haematoxylin. Number of spermatids was counted from the transverse section of testes and corrected for errors. Spermatid population was found to decrease continuously up to day 28 after exposure at all the intervalls and dose levels studied in both the drug treated (experimental) and non-drug treated (control) animals. Experimental testes showed significantly higher spermatid population than their respective controls at all the dose levels and intervals studied. Higher spermatid population observed in the experimental groups may be attributed to the radioprotective effect of WR-2721. The degree of protection was higher at 8 Gy than at 3 and 6 Gy

The role of perivascular and meningeal macrophages in experimental allergic encephalomyelitis

NARCIS (Netherlands)

Polfliet, Machteld M. J.; van de Veerdonk, F.; Döpp, Ed A.; van Kesteren-Hendrikx, Esther M. L.; van Rooijen, Nico; Dijkstra, Christine D.; van den Berg, Timo K.

2002-01-01

The perivascular (PVM) and meningeal (MM) macrophages constitute a major population of resident macrophages in the central nervous system (CNS). To investigate a possible role of PVM and MM during CNS inflammation, we have analysed PVM and MM during experimental allergic encephalomyelitis (EAE), an

Toxicity of cadmium and lead on tropical midge larvae, Chironomus kiiensis Tokunaga and Chironomus javanus Kieffer (Diptera: Chironomidae)

Science.gov (United States)

Ebau, Warrin; Rawi, Che Salmah Md; Din, Zubir; Al-Shami, Salman Abdo

2012-01-01

Objective To investigate the acute toxicity of cadmium and lead on larvae of two tropical Chironomid species, Chironomus kiiensis (C. kiiensis) Tokunaga and Chironomus javanus (C. javanus) Kieffer. Methods Different larval instars (first-fourth) were exposed using a static non-replacement testing procedures to various concentrations of cadmium and lead. Results In general, younger larvae (first and second instars) of both species were more sensitive to both metals than older larvae (third and forth instars). The toxic effects of the metals on C. kiiensis and C. javanus were influenced by the age of the larvae (first to fourth instars), types of metals (cadmium or lead) and duration of larval exposure (24, 48, 72 and 96 h) to the metals. Conclusions Cadmium was more toxic to the chironomids than lead and C. javanus was significantly more sensitive to both metals than C. kiiensis (P<0.05). PMID:23569984

Metabolic heterogeneity in clonal microbial populations.

Science.gov (United States)

Takhaveev, Vakil; Heinemann, Matthias

2018-02-21

In the past decades, numerous instances of phenotypic diversity were observed in clonal microbial populations, particularly, on the gene expression level. Much less is, however, known about phenotypic differences that occur on the level of metabolism. This is likely explained by the fact that experimental tools probing metabolism of single cells are still at an early stage of development. Here, we review recent exciting discoveries that point out different causes for metabolic heterogeneity within clonal microbial populations. These causes range from ecological factors and cell-inherent dynamics in constant environments to molecular noise in gene expression that propagates into metabolism. Furthermore, we provide an overview of current methods to quantify the levels of metabolites and biomass components in single cells. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Effects of mining activities on heavy metal concentrations in water, sediment, and macroinvertebrates in different reaches of the Pilcomayo River, South America.

Science.gov (United States)

Smolders, A J P; Lock, R A C; Van der Velde, G; Medina Hoyos, R I; Roelofs, J G M

2003-04-01

From 1997 until 1999 the extent and the ecological effects of zinc, copper, lead, and cadmium pollution were studied in different reaches of the South American Pilcomayo River. A comparison of metal concentrations in water, sediment, and chironomid larvae, as well as the diversity of macroinvertebrate species, was made between sites near the origin of the Pilcomayo River, with hardly any mining activities, sites in the Potosí region, with intensive mining, and sites located 500 km or further downstream of Potosí, in the Chaco plain. Samples were also collected in an unpolluted river (Cachi Mayu River) and in the Tarapaya River, which is strongly contaminated by mine tailings (1000 tons a day). The upper parts of the Pilcomayo River are strongly affected by the release of mine tailings from the Potosí mines where mean concentrations of lead, cadmium, copper, and zinc in water, filtered water, sediment, and chironomid larvae were up to a thousand times higher than the local background levels. The diversity of the benthic macroinvertebrate community was strongly reduced in the contaminated parts; 97% of the benthic macroinvertebrates consisted of chironomid larvae. The degree of contamination in the lower reaches of the river, however, was fairly low because of sedimentation processes and the strong dilution of mine tailings with enormous amounts of clean sediment from erosion processes. Analysis of sediment cores from the Ibibobo floodplain, however, reveal an increase of the heavy metal concentrations in the lower reaches since the introduction of the contaminating flotation process in the mine industry in 1985.

Ecological differentiation of Lemna minor L. and Spirodela polyrrhiza (L. Schleiden populations

Directory of Open Access Journals (Sweden)

Hanna Wożakowska-Natkaniec

2015-01-01

Full Text Available The subject of thep resent study are 19 natural, ecological populations of Lemna minor and Spirodela polyrrhiza coming from sixteen habitats in Lower Silesia. The study showed the essential differences between ecological populations of both species, conditioned on chemistry (pH, level N, P, K, Ca, Mg and Fe and the natural water radioactivity. It was shown experimentally that these populations, in nature, establish a set of ecotypes or ecophene variability. Ecotypic differentiation of populations of Lemna minor and Spirodela polyrrhiza is based upon individual features and population characteristics such as: shape and size of plants, plant frequency of two, three, and four fronds, the ratio of right- to left-handed plants, and the dynamics of growth and biomass production.

Population decline of the Elfin-woods Warbler Setophaga angelae in eastern Puerto Rico

Science.gov (United States)

W.J. Arendt; S.S. Qian; K. Mineard

2013-01-01

We estimated the population density of the globally threatened Elfin-woods Warbler Setophaga angelae within two forest types at different elevations in the Luquillo Experimental Forest in north-eastern Puerto Rico. Population densities ranged from 0.01 to 0.02 individuals/ha in elfin woodland and 0.06–0.26 individuals/ha in palo colorado forest in 2006, with average...

Impacts of environmental variability on desiccation rate, plastic responses and population dynamics of Glossina pallidipes.

Science.gov (United States)

Kleynhans, E; Clusella-Trullas, S; Terblanche, J S

2014-02-01

Physiological responses to transient conditions may result in costly responses with little fitness benefits, and therefore, a trade-off must exist between the speed of response and the duration of exposure to new conditions. Here, using the puparia of an important insect disease vector, Glossina pallidipes, we examine this potential trade-off using a novel combination of an experimental approach and a population dynamics model. Specifically, we explore and dissect the interactions between plastic physiological responses, treatment-duration and -intensity using an experimental approach. We then integrate these experimental results from organismal water-balance data and their plastic responses into a population dynamics model to examine the potential relative fitness effects of simulated transient weather conditions on population growth rates. The results show evidence for the predicted trade-off for plasticity of water loss rate (WLR) and the duration of new environmental conditions. When altered environmental conditions lasted for longer durations, physiological responses could match the new environmental conditions, and this resulted in a lower WLR and lower rates of population decline. At shorter time-scales however, a mismatch between acclimation duration and physiological responses was reflected by reduced overall population growth rates. This may indicate a potential fitness cost due to insufficient time for physiological adjustments to take place. The outcomes of this work therefore suggest plastic water balance responses have both costs and benefits, and these depend on the time-scale and magnitude of variation in environmental conditions. These results are significant for understanding the evolution of plastic physiological responses and changes in population abundance in the context of environmental variability. © 2014 The Authors. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

Taxonomic structure and population level of colon microbial contents in white rats with experimental thyrotoxicosis

Directory of Open Access Journals (Sweden)

L.I. Sydorchuk

2017-08-01

Full Text Available Background. Production of numerous biologically active compounds and their metabolites by intestinal microflora, interaction with the immune and other systems is of great importance while studying its changes in various diseases, one of which is thyrotoxicosis. So, the purpose of this study was to determine the severity of intestine microbioma disorder in white rats with experimental thyrotoxicosis (ET. Materials and methods. Studies were carried out on 25 mature male white rats (15 — control group, 10 — research group. ET was simulated by intragastric administration of L-thyroxine for 14 days. Under sterile conditions a laparotomy was performed, a section (2–3 cm of the large intestine with its contents was taken. Sterile 0.9% NaCl solution was added to the content. Series of ten-fold dilutions with a concentration of the initial mixture of 10–2 to 10–11 was prepared. From each test tube 0.01 ml was seeded on solid nutrient media with subsequent isolation and identification of microbes according to morphological, tinctorial, cultural and biochemical properties. Results. The results of the study demonstrated that in ET animals the main microbioma is represented by bacteria Bifidobacterium, Lactobacillus, Bacteroides, and also opportunistic enterobacteria (Escherichia, Proteus, Klebsiella, peptococcus, staphylococci and clostridia. This is accompanied by the elimination of Peptostreptococcus, Enterococcus from bacterial biotope and the contamination of K. oxytoca and staphylococci. There was a pronounced deficit of bifidobacteria by 42.81 %, lactobacillus by 22.57 %, normal intestinal bacillus by 16.48 %. By the population level, the coefficient of quantitative dominance and the significance factor, the leading place is occupied by bacteroids, role of which is increased by 21.72 %, and lactobacillus role decreases by 39.31 %, bifidobacteria decreases by 51.48 % and E. coli decreases by 57.49 %. In this case, the role of peptococcus 3

Field Surveys to Identify Biocontrol Agents of Hydrilla verticillata from June - September 2012

Science.gov (United States)

2015-07-01

taxonomists for full identification. Chironomid larvae damaging tips and emerging adults were collected from hydrilla at Chetian Town, Lizui Town, and...R. S. Arias, B. E. Scheffler, S. O. Duke, M. Netherland, F. E. Dayan. 2004. Somatic mutation-mediated evolution of herbicide resistance in the

Social interactions predict genetic diversification: an experimental manipulation in shorebirds.

Science.gov (United States)

Cunningham, Charles; Parra, Jorge E; Coals, Lucy; Beltrán, Marcela; Zefania, Sama; Székely, Tamás

2018-01-01

Mating strategy and social behavior influence gene flow and hence affect levels of genetic differentiation and potentially speciation. Previous genetic analyses of closely related plovers Charadrius spp. found strikingly different population genetic structure in Madagascar: Kittlitz's plovers are spatially homogenous whereas white-fronted plovers have well segregated and geographically distinct populations. Here, we test the hypotheses that Kittlitz's plovers are spatially interconnected and have extensive social interactions that facilitate gene flow, whereas white-fronted plovers are spatially discrete and have limited social interactions. By experimentally removing mates from breeding pairs and observing the movements of mate-searching plovers in both species, we compare the spatial behavior of Kittlitz's and white-fronted plovers within a breeding season. The behavior of experimental birds was largely consistent with expectations: Kittlitz's plovers travelled further, sought new mates in larger areas, and interacted with more individuals than white-fronted plovers, however there was no difference in breeding dispersal. These results suggest that mating strategies, through spatial behavior and social interactions, are predictors of gene flow and thus genetic differentiation and speciation. Our study highlights the importance of using social behavior to understand gene flow. However, further work is needed to investigate the relative importance of social structure, as well as intra- and inter-season dispersal, in influencing the genetic structures of populations.

Experimental evolution of protozoan traits in response to interspecific competition.

Science.gov (United States)

terHorst, C P

2011-01-01

Decades of experiments have demonstrated the ecological effect of competition, but experimental evidence for competitive effects on trait evolution is rare. I measured the evolution of six protozoan traits in response to competitors from the inquiline community of pitcher plants. Replicate populations of Colpoda, a ciliated protozoan, were allowed to evolve in response to intra- and interspecific competition for 20 days (approximately 100 generations), before traits were measured in two common garden environments. Populations that evolved with interspecific competition had smaller cell sizes, produced fewer cysts and had higher population growth rates relative to populations grown in monoculture. The presence of interspecific competitors led to differential lineage sorting, most likely by increasing the strength of selection. These results are the first to demonstrate protozoan evolution in response to competition and may have implications for species coexistence in this system. © 2010 The Author. Journal of Evolutionary Biology © 2010 European Society For Evolutionary Biology.

Variability of Caltha palustris L. populations in garden culture

Directory of Open Access Journals (Sweden)

Krystyna Falińska

2014-01-01

Full Text Available On the basis of studies performed in the experimental garden the character of the variability of Caltha palustris L. populations is described. Individuals were bred under uniform conditions from diaspores of meadow, springwood, flood-plain forest and alder forest populations. The results obtained allow to evaluate the hypothesis concerning the ecological preference of cytotypes (S m i t 1967, 1968 and the somewhat different ecological requirements of two subspecies: C. palustris ssp. palustris and C. palustris ssp. cornuta. It was found that each population includes individuals with different cytotypes. The situation is similar as far as subspecies are concerned, distinguished on the basis of fruit morphology (Fig. 1. It should be stressed, however, that, investigations of many years duration raised serious doubts as to the diagnostic value of fruit morphology (Figs. 2, 3. On the basis of the preserved differences between the populations in shoot habitus, reproduction and phenology in garden culture, a springwood and an alder forest ecotype were distinguished. Meadow and flood-plain populations exhibited a transitional character with certain similarities both to the alder forest and to the springwood populations.

Moving forward in circles: Challenges and opportunities in modeling population cycles

Science.gov (United States)

Barraquand, Frederic; Louca, Stilianos; Abbott, Karen C; Cobbold, Christina A; Cordoleani, Flora; DeAngelis, Donald L.; Elderd, Bret D; Fox, Jeremy W; Greenwood, Priscilla; Hilker, Frank M; Murray, Dennis; Stieha, Christopher R; Taylor, Rachel A; Vitense, Kelsey; Wolkowicz, Gail; Tyson, Rebecca C

2017-01-01

Population cycling is a widespread phenomenon, observed across a multitude of taxa in both laboratory and natural conditions. Historically, the theory associated with population cycles was tightly linked to pairwise consumer–resource interactions and studied via deterministic models, but current empirical and theoretical research reveals a much richer basis for ecological cycles. Stochasticity and seasonality can modulate or create cyclic behaviour in non-intuitive ways, the high-dimensionality in ecological systems can profoundly influence cycling, and so can demographic structure and eco-evolutionary dynamics. An inclusive theory for population cycles, ranging from ecosystem-level to demographic modelling, grounded in observational or experimental data, is therefore necessary to better understand observed cyclical patterns. In turn, by gaining better insight into the drivers of population cycles, we can begin to understand the causes of cycle gain and loss, how biodiversity interacts with population cycling, and how to effectively manage wildly fluctuating populations, all of which are growing domains of ecological research.

A new dietary model to study colorectal carcinogenesis: experimental design, food preparation, and experimental findings.

Science.gov (United States)

Rozen, P; Liberman, V; Lubin, F; Angel, S; Owen, R; Trostler, N; Shkolnik, T; Kritchevsky, D

1996-01-01

Experimental dietary studies of human colorectal carcinogenesis are usually based on the AIN-76A diet, which is dissimilar to human food in source, preparation, and content. The aims of this study were to examine the feasibility of preparing and feeding rats the diet of a specific human population at risk for colorectal neoplasia and to determine whether changes in the colonic morphology and metabolic contents would differ from those resulting from a standard rat diet. The mean daily food intake composition of a previously evaluated adenoma patient case-control study was used for the "human adenoma" (HA) experimental diet. Foods were prepared as for usual human consumption and processed by dehydration to the physical characteristics of an animal diet. Sixty-four female Sprague-Dawley rats were randomized and fed ad libitum the HA or the AIN-76A diet. Every eight weeks, eight rats from each group were sacrificed, and the colons and contents were examined. Analysis of the prepared food showed no significant deleterious changes; food intake and weight gain were similar in both groups. Compared with the controls, the colonic contents of rats fed the HA diet contained significantly less calcium, concentrations of neutral sterols, total lipids, and cholic and deoxycholic acids were increased, and there were no colonic histological changes other than significant epithelial hyperproliferation. This initial study demonstrated that the HA diet can be successfully processed for feeding to experimental animals and is acceptable and adequate for growth but induces significant metabolic and hyperproliferative changes in the rat colon. This dietary model may be useful for studies of human food, narrowing the gap between animal experimentation and human nutritional research.

Population transfer HMQC for half-integer quadrupolar nuclei

International Nuclear Information System (INIS)

Wang, Qiang; Xu, Jun; Feng, Ningdong; Deng, Feng; Li, Yixuan; Trébosc, Julien; Lafon, Olivier; Hu, Bingwen; Chen, Qun; Amoureux, Jean-Paul

2015-01-01

This work presents a detailed analysis of a recently proposed nuclear magnetic resonance method [Wang et al., Chem. Commun. 49(59), 6653-6655 (2013)] for accelerating heteronuclear coherence transfers involving half-integer spin quadrupolar nuclei by manipulating their satellite transitions. This method, called Population Transfer Heteronuclear Multiple Quantum Correlation (PT-HMQC), is investigated in details by combining theoretical analyses, numerical simulations, and experimental investigations. We find that compared to instant inversion or instant saturation, continuous saturation is the most practical strategy to accelerate coherence transfers on half-integer quadrupolar nuclei. We further demonstrate that this strategy is efficient to enhance the sensitivity of J-mediated heteronuclear correlation experiments between two half-integer quadrupolar isotopes (e.g., 27 Al- 17 O). In this case, the build-up is strongly affected by relaxation for small T 2 ′ and J coupling values, and shortening the mixing time makes a huge signal enhancement. Moreover, this concept of population transfer can also be applied to dipolar-mediated HMQC experiments. Indeed, on the AlPO 4 -14 sample, one still observes experimentally a 2-fold shortening of the optimum mixing time albeit with no significant signal gain in the 31 P-( 27 Al) experiments

Joint modeling and registration of cell populations in cohorts of high-dimensional flow cytometric data.

Directory of Open Access Journals (Sweden)

Saumyadipta Pyne

Full Text Available In biomedical applications, an experimenter encounters different potential sources of variation in data such as individual samples, multiple experimental conditions, and multivariate responses of a panel of markers such as from a signaling network. In multiparametric cytometry, which is often used for analyzing patient samples, such issues are critical. While computational methods can identify cell populations in individual samples, without the ability to automatically match them across samples, it is difficult to compare and characterize the populations in typical experiments, such as those responding to various stimulations or distinctive of particular patients or time-points, especially when there are many samples. Joint Clustering and Matching (JCM is a multi-level framework for simultaneous modeling and registration of populations across a cohort. JCM models every population with a robust multivariate probability distribution. Simultaneously, JCM fits a random-effects model to construct an overall batch template--used for registering populations across samples, and classifying new samples. By tackling systems-level variation, JCM supports practical biomedical applications involving large cohorts. Software for fitting the JCM models have been implemented in an R package EMMIX-JCM, available from http://www.maths.uq.edu.au/~gjm/mix_soft/EMMIX-JCM/.

Changes in population structures of the major species in selected ...

African Journals Online (AJOL)

The study was carried out in six satellite lakes by making investigations on fish collected from experimental and artisanal fisheries. The fishes were analysed for length frequencies, weight and numbers caught to determine the population structure of the fishes. Indiscriminate fishing by deploying illegal gears and increased ...

High salinity tolerance in eggs and fry of a brackish Esox lucius population

DEFF Research Database (Denmark)

Jørgensen, A.T.; Hansen, B.W.; Vismann, B.

2010-01-01

Knowledge on the biology and physiology of pike, Esox lucius L., populations inhabiting saline environments is scarce. An experimental setup was used to examine egg development and fry behaviour and growth under varying salinity levels in a brackish-water pike population from the western Baltic Sea....... Eggs and fry developed at 8.5 psu, which is higher than hitherto reported for other populations. Fry exhibited stress behaviour and reduced growth when subjected to salinities above 13 psu. This indicates that early life stages of E. lucius tolerate ambient salinity conditions equivalent to the natural...

Spatial and temporal variation in invertebrate consumer diets in forested and herbaceous wetlands

Science.gov (United States)

Alani N. Taylor; Darold P. Batzer

2010-01-01

Macroinvertebrates have important functional roles in wetland ecosystems, but these roles are not always well understood. This study assessed which foods invertebrate consumers assimilate within a set of wetland habitats. During 2006 and 2007, non-Tanypodinae chironomid larvae and select crustaceans (Crangonyx amphipods, Caecidotea isopods, Simocephalus cladocerans)...

Respiration of midges (Diptera; Chironomidae) in British Columbian lakes: oxy-regulation, temperature and their role as palaeo-indicators

DEFF Research Database (Denmark)

Brodersen, Klaus Peter; Pedersen, Ole; Walker, Ian R.

2008-01-01

1. The specific respiration rate of 13 chironomid taxa and Chaoborus were measured to test the hypothesis of the relation between a species' ability to regulate their oxygen uptake and their distributional patterns among nine study lakes in British Columbia, Canada. 2. Respiration patterns of ind...

De larven der Nederlandse Chironomidae (Diptera) Deel C: Autoekologie en verspreiding

NARCIS (Netherlands)

Moller Pillot, H.K.M.; Buskens, R.F.M.

1990-01-01

Chironomid larvae occur in nearly all kinds of fresh and brackish waters as well as in semiterrestrial environments. The authors treat the autecology and the distribution of more than 200 taxa in the Netherlands. Except for the tribe Tanytarsini (Chironominae) all the subfamilies occurring in the

Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness.

Directory of Open Access Journals (Sweden)

Nathan D Grubaugh

2015-05-01

Full Text Available Within hosts, RNA viruses form populations that are genetically and phenotypically complex. Heterogeneity in RNA virus genomes arises due to error-prone replication and is reduced by stochastic and selective mechanisms that are incompletely understood. Defining how natural selection shapes RNA virus populations is critical because it can inform treatment paradigms and enhance control efforts. We allowed West Nile virus (WNV to replicate in wild-caught American crows, house sparrows and American robins to assess how natural selection shapes RNA virus populations in ecologically relevant hosts that differ in susceptibility to virus-induced mortality. After five sequential passages in each bird species, we examined the phenotype and population diversity of WNV through fitness competition assays and next generation sequencing. We demonstrate that fitness gains occur in a species-specific manner, with the greatest replicative fitness gains in robin-passaged WNV and the least in WNV passaged in crows. Sequencing data revealed that intrahost WNV populations were strongly influenced by purifying selection and the overall complexity of the viral populations was similar among passaged hosts. However, the selective pressures that control WNV populations seem to be bird species-dependent. Specifically, crow-passaged WNV populations contained the most unique mutations (~1.7× more than sparrows, ~3.4× more than robins and defective genomes (~1.4× greater than sparrows, ~2.7× greater than robins, but the lowest average mutation frequency (about equal to sparrows, ~2.6× lower than robins. Therefore, our data suggest that WNV replication in the most disease-susceptible bird species is positively associated with virus mutational tolerance, likely via complementation, and negatively associated with the strength of selection. These differences in genetic composition most likely have distinct phenotypic consequences for the virus populations. Taken together

Guidance for Evaluating the Safety of Experimental Releases of Mosquitoes, Emphasizing Mark-Release-Recapture Techniques.

Science.gov (United States)

Benedict, Mark Q; Charlwood, J Derek; Harrington, Laura C; Lounibos, L Philip; Reisen, William K; Tabachnick, Walter J

2018-01-01

Experimental releases of mosquitoes are performed to understand characteristics of populations related to the biology, ability to transmit pathogens, and ultimately their control. In this article, we discuss considerations related to the safety of experimental releases of living mosquitoes, applying principles of good practice in vector biology that protect human health and comfort. We describe specific factors of experimental releases of mosquitoes that we believe are critical to inform institutional biosafety committees and similar review boards to which proposals to conduct mosquito release experiments have been submitted. In this study, "experimental releases" means those that do not significantly increase vector capacity or nuisance biting relative to the unperturbed natural baseline. This document specifically does not address releases of mosquitoes for ongoing control programs or trials of new control methods for which broader assessments of risk are required. It also does not address releases of transgenic or exotic (non-native) mosquito species, both of which require particular regulatory approval. Experimental releases may include females and males and evaluation must consider their effects based on the number released, their genotype and phenotype, the environment into which they are released, and postrelease collection activities. We consider whether increases of disease transmission and nuisance biting might result from proposed experimental releases against the backdrop of natural population size variation. We recommend that experimental releases be conducted in a manner that can be reasonably argued to have insignificant negative effects. Reviewers of proposals for experimental releases should expect applicants to provide such an argument based on evidence from similar studies and their planned activities. This document provides guidance for creating and evaluating such proposals.

An Experimental Evolution Test of the Relationship between Melanism and Desiccation Survival in Insects.

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Subhash Rajpurohit

Full Text Available We used experimental evolution to test the 'melanism-desiccation' hypothesis, which proposes that dark cuticle in several Drosophila species is an adaptation for increased desiccation tolerance. We selected for dark and light body pigmentation in replicated populations of D. melanogaster and assayed several traits related to water balance. We also scored pigmentation and desiccation tolerance in populations selected for desiccation survival. Populations in both selection regimes showed large differences in the traits directly under selection. However, after over 40 generations of pigmentation selection, dark-selected populations were not more desiccation-tolerant than light-selected and control populations, nor did we find significant changes in mass or carbohydrate amounts that could affect desiccation resistance. Body pigmentation of desiccation-selected populations did not differ from control populations after over 140 generations of selection, although selected populations lost water less rapidly. Our results do not support an important role for melanization in Drosophila water balance.

Examination of the influence of juvenile Atlantic salmon on the feeding mode of juvenile steelhead in Lake Ontario tributaries

Science.gov (United States)

Johnson, James H.; Waldt, Emily M.

2014-01-01

We examined diets of 1204 allopatric and sympatric juvenile Atlantic salmon (Salmo salar) and steelhead (Oncorhynchus mykiss) in three tributaries of Lake Ontario. The diet composition of both species consisted primarily of ephemeropterans, trichopterans, and chironomids, although juvenile steelhead consumed more terrestrial invertebrates, especially at the sympatric sites. Subyearlings of both species consumed small prey (i.e. chironomids) whereas large prey (i.e. perlids) made up a higher percentage of the diet of yearlings. The diet of juvenile steelhead at the allopatric sites was more closely associated with the composition of the benthos than with the drift, but was about equally associated with the benthos and drift at the sympatric sites. The diet of both subyearling and yearling Atlantic salmon was more closely associated with the benthos than the drift at the sympatric sites. The evidence suggests that juvenile steelhead may subtly alter their feeding behavior in sympatry with Atlantic salmon. This behavioral adaptation may reduce competitive interactions between these species.

Evolutionary and immediate effects of crude-oil pollution: depression of exploratory behaviour across populations of Trinidadian guppies.

Science.gov (United States)

Jacquin, L; Dybwad, C; Rolshausen, G; Hendry, A P; Reader, S M

2017-01-01

Human-induced perturbations such as crude-oil pollution can pose serious threats to aquatic ecosystems. To understand these threats fully it is important to establish both the immediate and evolutionary effects of pollutants on behaviour and cognition. Addressing such questions requires comparative and experimental study of populations that have evolved under different levels of pollution. Here, we compared the exploratory, activity and social behaviour of four populations of Trinidadian guppies (Poecilia reticulata) raised in common garden conditions for up to three generations. Two of these populations originated from tributaries with a long history of human-induced chronic crude-oil pollution with polycyclic aromatic hydrocarbons due to oil exploitation in Trinidad, the two others originating from non-polluted control sites. Laboratory-raised guppies from the oil-polluted sites were less exploratory in an experimental maze than guppies from the non-polluted sites and in a similar manner for the two independent rivers. We then compared the plastic behavioural responses of the different populations after an acute short-term experimental exposure to crude oil and found a decrease in exploration (but not in activity or shoaling) in the oil-exposed fish compared to the control subjects over all four populations. Taken together, these results suggest that both an evolutionary history with oil and an acute exposure to oil depressed guppy exploratory behaviour. We discuss whether the behavioural divergence observed represents adaptation to human-induced pollutants, the implications for conservation and the possible knock-on effects for information discovery and population persistence in fish groups.

Population crises and population cycles.

Science.gov (United States)

Russell, C; Russell, W M

2000-01-01

To prevent a population irretrievably depleting its resources, mammals have evolved a behavioural and physiological response to population crisis. When a mammalian population becomes dangerously dense, there is a reversal of behaviour. Co-operation and parental behaviour are replaced by competition, dominance and aggressive violence, leading to high mortality, especially of females and young, and a reduced population. The stress of overpopulation and the resulting violence impairs both the immune and the reproductive systems. Hence epidemics complete the crash of the population, and reproduction is slowed for three or four generations, giving the resources ample time to recover. In some mammal species, crisis and crisis response recur regularly, leading to cycles of population growth and relapse, oscillating about a fixed mean. Population crisis response and population cycles have been equally prominent in the history of human societies. But in man successive advances in food production have made possible growing populations, though with every such advance population soon outgrew resources again. Hence human cycles have been superimposed on a rising curve, producing a saw-tooth graph. Because advances in food production amounted to sudden disturbances in the relations between human populations and their environments, the crisis response in man has failed to avert famine and resource damage. In the large human societies evolved since the coming of settled agriculture and cities, the basic effects of violence, epidemics, famine and resource damage have been mediated by such specifically human disasters as inflation, unemployment, and political tyranny. An account of past crises, periods of relative relief from population pressure, and resulting cycles, is given for a number of regions: China, North Africa and Western Asia, the northern Mediterranean, and north-western Europe. The paper ends with an account of the present world-wide population crisis, and the solution

Explaining stasis: microevolutionary studies in natural populations.

Science.gov (United States)

Merilä, J; Sheldon, B C; Kruuk, L E

2001-01-01

Microevolution, defined as a change in the genetic constitution of a population over time, is considered to be of commonplace occurrence in nature. Its ubiquity can be inferred from the observation that quantitative genetic divergence among populations usually exceeds that to be expected due to genetic drift alone, and from numerous observations and experiments consistent with local adaptation. Experimental manipulations in natural populations have provided evidence that rapid evolutionary responses may occur in the wild. However, there are remarkably few cases where direct observations of natural populations have revealed microevolutionary changes occurring, despite the frequent demonstration of additive genetic variation and strong directional selection for particular traits. Those few cases where responses congruent with expectation have been demonstrated are restricted to changes over one generation. In this article we focus on possible explanations as to why heritable traits under apparently strong directional selection often fail to show the expected evolutionary response. To date, few of these explanations for apparent stasis have been amenable to empirical testing. We describe new methods, derived from procedures developed by animal breeding scientists, which can be used to address these explanations, and illustrate the approach with examples from long-term studies of collared flycatchers (Ficedula albicollis) and red deer (Cervus elaphus). Understanding why most intensively studied natural populations do not appear to be evolving is an important challenge for evolutionary biology.

The effect of feeding wheat with purple pericarp on the growth of carp

Directory of Open Access Journals (Sweden)

Jan Mareš

2015-08-01

Full Text Available This study assessed and compared the influence of feeding wheat with purple pericarp (variety Konini and standard coloured wheat (red variety Bohemia on the growth characteristics of fingerling carp (Cyprinus carpio L. of the "Amurský lysec" line. The total content of anthocyanins converted to cyanidin 3-glucoside in the control Bohemia wheat was 24.95 mg.kg-1 and in the Konini purple wheat 41.70 mg.kg-1. Two experimental variants for feed were evaluated: dipped wheat grain and crushed wheat grain. The feed dose for wheat was 1.5% of the fish stock weight and for natural food (frozen Chironomid larvae was 0.2% of fish stock weight to all variants. Growth parameters (body length, body weight, Fulton's condition factor and feed conversion ratio of the fish were evaluated after one month of administration. The feed consumption and physico-chemical parameters (temperature, oxygen saturation, pH, N-NH4 +, N-NO2-, N-NO3- and Cl- of the environment were observed. During the feeding test, no major differences in food consumption among variations feeding on either wheat and on Chironomid larvae were noted. Satisfying results for mas and length gain were achieved in V2 wheat with purple pericarp (Konini variety - dipped grain, where the average total body length was 156.56 mm and the average unit mass was 60.81 g. In this variant, higher values of the parameters were achieved compared to the control group (100.6%, resp. 104.2%. A positive impact of wheat with purple pericarp on the evaluated parameter of fish condition factor was demonstrated. This trend was confirmed in all variants. No effect was demonstrated for mechanical disruption of kernels on the level of utilization of nutrients. In further experiments on growth characteristics we would like to determine antioxidant parameters in the blood and liver of fry.

Experimental aspects of ion acceleration and transport in the Earth's magnetosphere

International Nuclear Information System (INIS)

Young, D.T.

1985-01-01

Major particle population within the Earth's magnetosphere have been studied via ion acceleration processes. Experimental advances over the past ten to fifteen years have demonstrated the complexity of the processes. A review is given here for areas where composition experiments have expanded perception on magnetospheric phenomena. 64 refs., 6 figs., 1 tab

Unpredictable responses of garden snail (Helix aspersa) populations to climate change

NARCIS (Netherlands)

Bezemer, T.M.; Knight, K.J.

2001-01-01

We studied the impact of climate change on the population dynamics of the garden snail (Helix aspersa) in the Ecotron controlled environment facility. The experimental series ran for three plant generations, allowing the snails to reproduce. We investigated the isolated and combined effects of

Modelling concentration-analgesia relationships for morphine to evaluate experimental pain models

DEFF Research Database (Denmark)

Sverrisdóttir, Eva; Foster, David John Richard; Upton, Richard Neil

2015-01-01

The aim of this study was to develop population pharmacokinetic-pharmacodynamic models for morphine in experimental pain induced by skin heat and muscle pressure, and to evaluate the experimental pain models with regard to assessment of morphine pharmacodynamics. In a randomized, double......-blind, placebo-controlled, crossover study, 39 healthy volunteers received an oral dose of 30 mg morphine hydrochloride or placebo. Non-linear mixed effects modelling was used to describe the plasma concentrations of morphine and metabolites, and the analgesic effect of morphine on experimental pain in skin...... and muscle. Baseline pain metrics varied between individuals and occasions, and were described with interindividual and interoccasion variability. Placebo-response did not change with time. For both pain metrics, morphine effect was proportional to baseline pain and was described with a linear model...

Structural stability of nonlinear population dynamics.

Science.gov (United States)

Cenci, Simone; Saavedra, Serguei

2018-01-01

In population dynamics, the concept of structural stability has been used to quantify the tolerance of a system to environmental perturbations. Yet, measuring the structural stability of nonlinear dynamical systems remains a challenging task. Focusing on the classic Lotka-Volterra dynamics, because of the linearity of the functional response, it has been possible to measure the conditions compatible with a structurally stable system. However, the functional response of biological communities is not always well approximated by deterministic linear functions. Thus, it is unclear the extent to which this linear approach can be generalized to other population dynamics models. Here, we show that the same approach used to investigate the classic Lotka-Volterra dynamics, which is called the structural approach, can be applied to a much larger class of nonlinear models. This class covers a large number of nonlinear functional responses that have been intensively investigated both theoretically and experimentally. We also investigate the applicability of the structural approach to stochastic dynamical systems and we provide a measure of structural stability for finite populations. Overall, we show that the structural approach can provide reliable and tractable information about the qualitative behavior of many nonlinear dynamical systems.

Structural stability of nonlinear population dynamics

Science.gov (United States)

Cenci, Simone; Saavedra, Serguei

2018-01-01

In population dynamics, the concept of structural stability has been used to quantify the tolerance of a system to environmental perturbations. Yet, measuring the structural stability of nonlinear dynamical systems remains a challenging task. Focusing on the classic Lotka-Volterra dynamics, because of the linearity of the functional response, it has been possible to measure the conditions compatible with a structurally stable system. However, the functional response of biological communities is not always well approximated by deterministic linear functions. Thus, it is unclear the extent to which this linear approach can be generalized to other population dynamics models. Here, we show that the same approach used to investigate the classic Lotka-Volterra dynamics, which is called the structural approach, can be applied to a much larger class of nonlinear models. This class covers a large number of nonlinear functional responses that have been intensively investigated both theoretically and experimentally. We also investigate the applicability of the structural approach to stochastic dynamical systems and we provide a measure of structural stability for finite populations. Overall, we show that the structural approach can provide reliable and tractable information about the qualitative behavior of many nonlinear dynamical systems.

An age-structured population balance model for microbial dynamics

Directory of Open Access Journals (Sweden)

Duarte M.V.E.

2003-01-01

Full Text Available This work presents an age-structured population balance model (ASPBM for a bioprocess in a continuous stirred-tank fermentor. It relates the macroscopic properties and dynamic behavior of biomass to the operational parameters and microscopic properties of cells. Population dynamics is governed by two time- and age-dependent density functions for living and dead cells, accounting for the influence of substrate and dissolved oxygen concentrations on cell division, aging and death processes. The ASPBM described biomass and substrate oscillations in aerobic continuous cultures as experimentally observed. It is noteworthy that a small data set consisting of nonsegregated measurements was sufficient to adjust a complex segregated mathematical model.

Internal rotation for predicting conformational population of 1,2-difluorethane and 1,2-dichloroethane

Energy Technology Data Exchange (ETDEWEB)

Venâncio, Mateus F. [Laboratório de Química Computacional e Modelagem Molecular, Departamento de Química, ICEx, Universidade Federal de Minas Gerais, Campus Universitário, 31.270-901 Belo Horizonte, MG (Brazil); Dos Santos, Hélio F. [Núcleo de Estudos em Química Computacional (NEQC), Departamento de Química, ICE, Universidade Federal de Juiz de Fora (UFJF), Campus Universitário, Martelos, Juiz de Fora, MG 36036-330 (Brazil); De Almeida, Wagner B., E-mail: wbdealmeida@gmail.com [Laboratório de Química Computacional (LQC), Departamento de Química Inorgânica, Instituto de Química, Universidade Federal Fluminense, Campus do Valonguinho, Centro, Niterói, RJ CEP: 24020-141 (Brazil)

2016-06-15

Highlights: • Contribution of internal rotation to Gibbs free energy estimated using the quantum pendulum model. • Theoretical prediction of conformational population of 1,2-difluorethane and 1,2-dichloroethane. • The predicted populations are in excellent agreement with experimental gas phase data available. • QPM model account for low vibrational frequency modes effect on thermodynamic calculation. • Caution is needed when the RR–HO approach has to be used in conformational analysis studies. - Abstract: The contribution of internal rotation to the thermal correction of Gibbs free energy (ΔG) is estimated using the quantum pendulum model (QPM) to solve the characteristic Schrödinger equation. The procedure is applied to theoretical prediction of conformational population of 1,2-difluorethane (1,2-DFE) and 1,2-dichloroethane (1,2-DCE) molecules. The predicted population for the anti form was 37% and 75%, for 1,2-DFE and 1,2-DCE respectively, in excellent agreement with experimental gas phase data available, 37 ± 5% and 78 ± 5%. These results provide great support to the use of the QPM model to account for the low vibrational frequency modes effect on the calculation of thermodynamic properties.

Differences in sensitivity to the fungal pathogen Batrachochytrium dendrobatidis among amphibian populations.

Science.gov (United States)

Bradley, Paul W; Gervasi, Stephanie S; Hua, Jessica; Cothran, Rickey D; Relyea, Rick A; Olson, Deanna H; Blaustein, Andrew R

2015-10-01

Contributing to the worldwide biodiversity crisis are emerging infectious diseases, which can lead to extirpations and extinctions of hosts. For example, the infectious fungal pathogen Batrachochytrium dendrobatidis (Bd) is associated with worldwide amphibian population declines and extinctions. Sensitivity to Bd varies with species, season, and life stage. However, there is little information on whether sensitivity to Bd differs among populations, which is essential for understanding Bd-infection dynamics and for formulating conservation strategies. We experimentally investigated intraspecific differences in host sensitivity to Bd across 10 populations of wood frogs (Lithobates sylvaticus) raised from eggs to metamorphosis. We exposed the post-metamorphic wood frogs to Bd and monitored survival for 30 days under controlled laboratory conditions. Populations differed in overall survival and mortality rate. Infection load also differed among populations but was not correlated with population differences in risk of mortality. Such population-level variation in sensitivity to Bd may result in reservoir populations that may be a source for the transmission of Bd to other sensitive populations or species. Alternatively, remnant populations that are less sensitive to Bd could serve as sources for recolonization after epidemic events. © 2015 Society for Conservation Biology.

De larven der Nederlandse Chironomidae (Diptera) : Inleiding, Tanypodinae & Chironomini

NARCIS (Netherlands)

Moller Pillot, H.K.M.

1984-01-01

This first part of 'The larvae of the Dutch Chironomidae' deals with the larvae of Tanypodinae and Chironomini. In chapter I an introduction is given to sampling and handling of chironomid larvae. In chapter II their general morphology and development are described, followed by a key to the

Biological Control Agents of Hydrilla Verticillata; Final Report on Surveys in East Africa, 1981-1984.

Science.gov (United States)

1986-07-01

vast numbers of chironomid larvae, together with small nematodes , trichopterans, and various other less abundant insect larvae. However, most of these...Luond, R. 1982. "A Revision of the Genus Hydrilla (Hydrocharitaceae)," Aquatic Botany, Vol 13, pp 485-504. Markham, R. H. 1982. "Search for Biocontrol

Effects of seasonality and resource limitation on organic matter turnover by Chironomidae (Diptera) in southern Appalachian headwater streams

Science.gov (United States)

Angela Romito; Susan Eggert; Jeffrey Diez; J. Wallace

2010-01-01

Despite their high abundance, secondary production, and known reliance on detrital material, the role of chironomids (Diptera) in fine particulate organic matter (FPOM) dynamics has not been well quantified. We conducted field trials using fluorescent pigment markers to estimate seasonal rates of consumption, annual secondary production, assimilation efficiency (AE),...

Changes in the deep-water benthos of eastern Lake Erie between 1979 and 1993

Energy Technology Data Exchange (ETDEWEB)

Dermott, R.; Kerec, D. [Fisheries and Oceans, Burlington, Ontario (Canada)

1995-06-01

In order to examine changes of the benthic community and benthic biomass as a result of mussel colonization, a survey of the deep-water benthic fauna in eastern Lake Erie was repeated in 1993 using the same sites and methods as in a 1979 survey. During 1979, the community beyond 30 m was dominated by oligochaete worms and the burrowing amphipod Diporeia, which represented 50 and 40% of the total benthic biomass respectively. By 1993, quagga mussels (Dreissena bugensis) formed over 90% of the benthic biomass. Mussels were present at all 13 sites. Densities of individuals >2 mm in length averaged 3,241 mussels m{sup -2}. Of these mussels, 97% were quagga mussels. Total density of all sizes retained on a 180 {mu}m sieve averaged 34,800 mussels m{sup -2} but total biomass decreased from 1.58 to 0.98 g m{sup -2}. The density of the amphipod Diporeia was reduced from 1,844 in 1979 to 218 m{sup -2} in 1993. While present at all sites during 1979, Diporeia remained common only at two sites and were absent at 8 of the 13 sites in 1993. The native fingernail clams, Pisidium spp., were reduced from 327 to 82 m{sup -2}. No significant reduction occurred in the worm and chironomid populations, however the dry biomass of the chironomids was reduced from 0.07 to 0.0008 g m{sup -2}. These reductions may be due to competition with the mussels for freshly settling algae. The meiofauna, which included small nematodes, ostracods, and harpacticoids retained on a 180 {mu}m sieve, all increased in density. Perhaps they benefited from an increase in the detritus deposited as pseudofeces around the mussels.

IS THE MATRIX REALLY INHOSPITABLE? VOLE RUNWAY DISTRIBUTION IN AN EXPERIMENTALLY FRAGMENTED LANDSCAPE

Science.gov (United States)

Habitat fragmentation is a common feature of modern landscapes, with significant impacts on the population densities of and space use by animals. A frequest model system for studying these effects is that of voles (Microtus spp.) and other rodents in experimentally fragmented gr...

Estimation of thyroid gland state of voles natural populations from increased radioactive background territories

Energy Technology Data Exchange (ETDEWEB)

Raskosha, O.; Ermakova, O.; Kaneva, A. [Institute of Biology of Komi Scientific Center, Ural Division of Russian Academy of Science (Russian Federation)

2014-07-01

Investigation of effects caused in biological objects by chronic low-intensity radiation in their natural habitats is one of the most important problems of modern radioecology. The aim of our work - complex estimation of state of thyroid gland of voles inhabiting increased radioactive background territories. We investigated tundra voles (Microtus oeconomus Pall.) that were sampled at different stages of population cycle from the experimental and the control sites in the Uhta region of the Komi Republic, Russia. Experimental site contamination resulted from commercial extraction od radium between the 1930's and 1950's. Irradiation exposure dose at the site was 50-2000 mR/h (at the control site 10-15 mR/h). Complex estimation of thyroid was made by histological, morpho-metrical, radioimmunological and cytogenetic methods. Results showed high sensitivity of thyroid gland of tundra voles from chronically irradiated natural populations. We found reliable changes in morphological features of thyroid, in the level of thyroidal hormones and increased frequency of cells with micro-nucleuses in animals sampled from the experimental site as compared with the control ones. It was also showed, that chronic exposure of ionizing irradiation at the same range of absorbed doses can cause different effects in animals depending on sex, age and the stage of population cycle. This confirms the need of including these biological factors to analysis of low doses effects in the natural populations during radioecological studies. Investigations were supported by RFBR grants No. 13-04-01750? and No. 13-04-90351-RBUa. Document available in abstract form only. (authors)

Demixed principal component analysis of neural population data.

Science.gov (United States)

Kobak, Dmitry; Brendel, Wieland; Constantinidis, Christos; Feierstein, Claudia E; Kepecs, Adam; Mainen, Zachary F; Qi, Xue-Lian; Romo, Ranulfo; Uchida, Naoshige; Machens, Christian K

2016-04-12

Neurons in higher cortical areas, such as the prefrontal cortex, are often tuned to a variety of sensory and motor variables, and are therefore said to display mixed selectivity. This complexity of single neuron responses can obscure what information these areas represent and how it is represented. Here we demonstrate the advantages of a new dimensionality reduction technique, demixed principal component analysis (dPCA), that decomposes population activity into a few components. In addition to systematically capturing the majority of the variance of the data, dPCA also exposes the dependence of the neural representation on task parameters such as stimuli, decisions, or rewards. To illustrate our method we reanalyze population data from four datasets comprising different species, different cortical areas and different experimental tasks. In each case, dPCA provides a concise way of visualizing the data that summarizes the task-dependent features of the population response in a single figure.

Temporal variation in temperature determines disease spread and maintenance in Paramecium microcosm populations

Science.gov (United States)

Duncan, Alison B.; Fellous, Simon; Kaltz, Oliver

2011-01-01

The environment is rarely constant and organisms are exposed to temporal and spatial variations that impact their life histories and inter-species interactions. It is important to understand how such variations affect epidemiological dynamics in host–parasite systems. We explored effects of temporal variation in temperature on experimental microcosm populations of the ciliate Paramecium caudatum and its bacterial parasite Holospora undulata. Infected and uninfected populations of two P. caudatum genotypes were created and four constant temperature treatments (26°C, 28°C, 30°C and 32°C) compared with four variable treatments with the same mean temperatures. Variable temperature treatments were achieved by alternating populations between permissive (23°C) and restrictive (35°C) conditions daily over 30 days. Variable conditions and high temperatures caused greater declines in Paramecium populations, greater fluctuations in population size and higher incidence of extinction. The additional effect of parasite infection was additive and enhanced the negative effects of the variable environment and higher temperatures by up to 50 per cent. The variable environment and high temperatures also caused a decrease in parasite prevalence (up to 40%) and an increase in extinction (absence of detection) (up to 30%). The host genotypes responded similarly to the different environmental stresses and their effect on parasite traits were generally in the same direction. This work provides, to our knowledge, the first experimental demonstration that epidemiological dynamics are influenced by environmental variation. We also emphasize the need to consider environmental variance, as well as means, when trying to understand, or predict population dynamics or range. PMID:21450730

Drug research methodology. Volume 5, Experimentation in drugs and highway safety : the study of drug effects on skills related to driving

Science.gov (United States)

1980-06-01

This report presents the findings of a workshop on experimental research in the area of drugs and highway safety. Complementing studies of drug use in different driving populations, experimentation here refers to studies performed under controlled co...

Factors associated with experimentation of electronic cigarettes among Parisian teenagers in 2013.

Science.gov (United States)

Dautzenberg, Bertrand; Berlin, Ivan; Tanguy, Marie-Laure; Rieu, Nicole; Birkui, Pierre

2015-01-01

Electronic cigarettes (e-cig.) became widely used among adults. Data are insufficient about e-cig. experimentation among youth. To assess prevalence of e-cig. experimentation and associated factors among the 12 to 19 years old we analyse a cross sectional school based survey in the city of Paris, France in 2013 on a randomly selected sample of 2 % of schoolchildren (n = 3 279). Self-report questionnaire include demographic, individual and family smoking characteristics and questions about e-cig: "Have you ever used an e-cigarette?"- "Did you use e-cigarette in the last 30 days?"-"Did you try e-cigarette as a first tobacco product?". In 2013, 17.9 % (564) schoolchildren reported having experienced the e-cig (boys: 19.0 %, girls: 16.8 %) compared to 9.8 % in 2012. Experimentation rate increases from 5 % among the 12 to 30 % among the 16-year-old. E-cig. experimentation was significantly associated with 11 parameters including : age >15 years (OR: 0.66 (IC95 % = 0.46-0.94)); smoking 10 cigarettes or more (OR = 5.67 (IC95 % = 3.11-10.34)), best friends and siblings smoker (OR = 1.54 (IC95 % = 1.11-2.14)) and (OR = 1.88 (IC95 % = 1.41-2.52)); experimentation of shisha (OR = 2.60 (IC95 % = 1.75-3.86)), cannabis use (OR = 1.90 (IC95 % = 1.32-2.72)); having two parents who forbid smoking (OR = 2.32 (IC95 % = 1.63-3.30)). Only 5.6 % of the study population (and 32.5 % of e-cig. experimenters (183/564)) have used it in the last 30 days; 1.7 % of the study population and 10.0 % of e-cig. experimenters were non-smokers (56/564). Rate of e-cig. experimentation among schoolchildren increased by 8.1 % in 1 year. Non-smoking youth may use e-cig. Prospective studies are urgently needed to assess the evolution of e-cig. use both among smoking and non-smoking youth.

Coherent population trapping magnetometer by differential detecting magneto–optic rotation effect

International Nuclear Information System (INIS)

Zhang Fan; Tian Yuan; Zhang Yi; Gu Si-Hong

2016-01-01

A pocket coherent population trapping (CPT) atomic magnetometer scheme that uses a vertical cavity surface emitting laser as a light source is proposed and experimentally investigated. Using the differential detecting magneto–optic rotation effect, a CPT spectrum with the background canceled and a high signal-to-noise ratio is obtained. The experimental results reveal that the sensitivity of the proposed scheme can be improved by half an order, and the ability to detect weak magnetic fields is extended one-fold. Therefore, the proposed scheme is suited to realize a pocket-size CPT magnetometer. (paper)

Spiral wave chimera states in large populations of coupled chemical oscillators

Science.gov (United States)

Totz, Jan Frederik; Rode, Julian; Tinsley, Mark R.; Showalter, Kenneth; Engel, Harald

2018-03-01

The coexistence of coherent and incoherent dynamics in a population of identically coupled oscillators is known as a chimera state1,2. Discovered in 20023, this counterintuitive dynamical behaviour has inspired extensive theoretical and experimental activity4-15. The spiral wave chimera is a particularly remarkable chimera state, in which an ordered spiral wave rotates around a core consisting of asynchronous oscillators. Spiral wave chimeras were theoretically predicted in 200416 and numerically studied in a variety of systems17-23. Here, we report their experimental verification using large populations of nonlocally coupled Belousov-Zhabotinsky chemical oscillators10,18 in a two-dimensional array. We characterize previously unreported spatiotemporal dynamics, including erratic motion of the asynchronous spiral core, growth and splitting of the cores, as well as the transition from the chimera state to disordered behaviour. Spiral wave chimeras are likely to occur in other systems with long-range interactions, such as cortical tissues24, cilia carpets25, SQUID metamaterials26 and arrays of optomechanical oscillators9.

Identification of threshold body burdens of metals for the protection of the aquatic ecological status using two benthic invertebrates

International Nuclear Information System (INIS)

Bervoets, Lieven; De Jonge, Maarten; Blust, Ronny

2016-01-01

In this study accumulated concentrations of As, Cd, Cr, Cu, Ni, Pb and Zn in two benthic invertebrate taxa, Chironomus sp. and Tubificidae are related to ecological responses expressed as changes in macro invertebrate communities. In addition critical body burdens were estimated above which ecological quality was always lower than a certain threshold. Data from existing studies on bioaccumulation of the metals in both taxa were combined with different biological water quality indices. For all metal-endpoint combinations threshold values could be calculated above which ecological quality was always low. Safe threshold body burdens could be estimated for both species for all metals although the data set was more extended for Chrionomus sp. with estimated threshold values being 65, 3.2, 10, 57, 6.5, 73 and 490 μg/g dw for As, Cd, Cr, Cu, Ni, Pb and Zn. This study demonstrated that metal accumulation in resistant species such as chironomids and tubificid worms have the potential to be used as predictors of ecological effects in aquatic ecosystems. However, the estimated threshold values have to be validated and supported by more lines of evidence before they can be used by regulators. - Highlights: • Chironomid larvae and Tubificid worms can be used to relate accumulated metals to ecological endpoints. • Ecological water quality, calculated with biotic indices, is always low at high accumulated metal concentrations. • Critical body burdens in chironomids and tubificds could be estimated for As, Cd, Cr, Cu, Ni, Pb and Zn. - Maximal body burdens of metals in two invertebrate species could be estimated above which ecological quality was always low.

Bayesian Population Physiologically-Based Pharmacokinetic (PBPK Approach for a Physiologically Realistic Characterization of Interindividual Variability in Clinically Relevant Populations.

Directory of Open Access Journals (Sweden)

Markus Krauss

Full Text Available Interindividual variability in anatomical and physiological properties results in significant differences in drug pharmacokinetics. The consideration of such pharmacokinetic variability supports optimal drug efficacy and safety for each single individual, e.g. by identification of individual-specific dosings. One clear objective in clinical drug development is therefore a thorough characterization of the physiological sources of interindividual variability. In this work, we present a Bayesian population physiologically-based pharmacokinetic (PBPK approach for the mechanistically and physiologically realistic identification of interindividual variability. The consideration of a generic and highly detailed mechanistic PBPK model structure enables the integration of large amounts of prior physiological knowledge, which is then updated with new experimental data in a Bayesian framework. A covariate model integrates known relationships of physiological parameters to age, gender and body height. We further provide a framework for estimation of the a posteriori parameter dependency structure at the population level. The approach is demonstrated considering a cohort of healthy individuals and theophylline as an application example. The variability and co-variability of physiological parameters are specified within the population; respectively. Significant correlations are identified between population parameters and are applied for individual- and population-specific visual predictive checks of the pharmacokinetic behavior, which leads to improved results compared to present population approaches. In the future, the integration of a generic PBPK model into an hierarchical approach allows for extrapolations to other populations or drugs, while the Bayesian paradigm allows for an iterative application of the approach and thereby a continuous updating of physiological knowledge with new data. This will facilitate decision making e.g. from preclinical to

Microbial population changes during bioremediation of an experimental oil spill

International Nuclear Information System (INIS)

MacNaughton, S.J.; Stephen, J.R.; Chang, Y.J.; Davis, G.A.; White, D.C.; Oak Ridge National Lab., TN

1999-01-01

Three crude oil bioremediation techniques were applied in a randomized block field experiment simulating a coastal oil spill. Four treatments (no oil control, oil alone, oil plus nutrients, and oil plus nutrients plus an indigenous inoculum) were applied. In situ microbial community structures were monitored by phospholipid fatty acid (PLFA) analysis and 16S rDNA PCR-denaturing gradient gel electrophoresis (DGGE) to (i) identify the bacterial community members responsible for the decontamination of the site and (ii) define an end point for the removal of the hydrocarbon substrate. The results of PLFA analysis demonstrated a community shift in all plots from primarily eukaryotic biomass to gram-negative bacterial biomass with time. PLFA profiles from the oiled plots suggested increased gram-negative biomass and adaptation to metabolic stress compared to unoiled controls. DGGE analysis of untreated control plots revealed a simple, dynamic dominant population structure throughout the experiment. This banding pattern disappeared in all oiled plots, indicating that the structure and diversity of the dominant bacterial community changed substantially. No consistent differences were detected between nutrient-amended and indigenous inoculum-treated plots, but both differed from the oil-only plots. Prominent bands were excised for sequence analysis and indicated that oil treatment encouraged the growth of gram-negative microorganisms within the α-proteobacteria and Flexibacter-Cytophaga-Bacteroides phylum. α-Proteobacteria were never detected in unoiled controls. PLFA analysis indicated that by week 14 the microbial community structures of the oiled plots were becoming similar to those of the unoiled controls from the same time point, but DGGE analysis suggested that major differences in the bacterial communities remained

Long-term effects of the water-accomodated fraction (WAF) of diesel oil on rocky shore populations maintained in experimental mesocosms

Energy Technology Data Exchange (ETDEWEB)

Bokn, T.L. [Norwegian Inst. for Water Research, Oslo (Norway); Moy, F.E. [Norwegian Inst. for Water Research, Oslo (Norway); Murray, S.N. [California State Univ., Fullerton, CA (United States). Dept. of Biological Science

1993-12-31

The long-term effects of continuous doses (average hydrocarbon concentration =129.4 {mu}g L{sup -1} and 30.1 {mu}g L{sup -1}) of the water-accommodated fraction (WAF) of diesel oil on 15 rocky littoral populations were determined at three tidal levels in experimental mesocosms over two years. At each tidal level, most species exhibited similar abundance changes in both oil-contaminated and control (average background hydrocarbon concentration = 5.6 {mu}g L{sup -1}) mesocosms. Significant changes in species abundances attributable to oil (WAF) were demonstrated for only two of ten seaweeds and three of five invertebrates. Compared with the other mesocosms, significantly greater reductions in upper-level cover were recorded in the basin receiving the highest oil dosage for the seaweeds Phymatolithon lenormandii and Fucus evanescents together with lower recruitment of the barnacle Semibalanus balanoides. The mussel Mytilus edulis was storngly affected by the oil treatments and essentially disappeared from both oil-contaminated mesocosms. Numbers of the starfish Asterias rubens also fell to zero at the lowest tidal level in the basin receiving the highest oil dosage. There were no demonstrable differences in the abundance patterns of the gastropod Littorina littorea, the crab Carcinus maenus, and a total of eight brown (Ascophyllum nodosum, Fucus serratus, F. vesiculosus, Laminaria digitata), red (Chondrus crispus), and green (Cladophora rupestris, Enteromorpha spp., Ulva lactuca) seaweeds in the oil-contaminated compared with the control mesocosms. (orig.)

Long-term effects of the water-accomodated fraction (WAF) of diesel oil on rocky shore populations maintained in experimental mesocosms

International Nuclear Information System (INIS)

Bokn, T.L.; Moy, F.E.; Murray, S.N.

1993-01-01

The long-term effects of continuous doses (average hydrocarbon concentration =129.4 μg L -1 and 30.1 μg L -1 ) of the water-accommodated fraction (WAF) of diesel oil on 15 rocky littoral populations were determined at three tidal levels in experimental mesocosms over two years. At each tidal level, most species exhibited similar abundance changes in both oil-contaminated and control (average background hydrocarbon concentration = 5.6 μg L -1 ) mesocosms. Significant changes in species abundances attributable to oil (WAF) were demonstrated for only two of ten seaweeds and three of five invertebrates. Compared with the other mesocosms, significantly greater reductions in upper-level cover were recorded in the basin receiving the highest oil dosage for the seaweeds Phymatolithon lenormandii and Fucus evanescents together with lower recruitment of the barnacle Semibalanus balanoides. The mussel Mytilus edulis was storngly affected by the oil treatments and essentially disappeared from both oil-contaminated mesocosms. Numbers of the starfish Asterias rubens also fell to zero at the lowest tidal level in the basin receiving the highest oil dosage. There were no demonstrable differences in the abundance patterns of the gastropod Littorina littorea, the crab Carcinus maenus, and a total of eight brown (Ascophyllum nodosum, Fucus serratus, F. vesiculosus, Laminaria digitata), red (Chondrus crispus), and green (Cladophora rupestris, Enteromorpha spp., Ulva lactuca) seaweeds in the oil-contaminated compared with the control mesocosms. (orig.)

Making sense of snapshot data: ergodic principle for clonal cell populations.

Science.gov (United States)

Thomas, Philipp

2017-11-01

Population growth is often ignored when quantifying gene expression levels across clonal cell populations. We develop a framework for obtaining the molecule number distributions in an exponentially growing cell population taking into account its age structure. In the presence of generation time variability, the average acquired across a population snapshot does not obey the average of a dividing cell over time, apparently contradicting ergodicity between single cells and the population. Instead, we show that the variation observed across snapshots with known cell age is captured by cell histories, a single-cell measure obtained from tracking an arbitrary cell of the population back to the ancestor from which it originated. The correspondence between cells of known age in a population with their histories represents an ergodic principle that provides a new interpretation of population snapshot data. We illustrate the principle using analytical solutions of stochastic gene expression models in cell populations with arbitrary generation time distributions. We further elucidate that the principle breaks down for biochemical reactions that are under selection, such as the expression of genes conveying antibiotic resistance, which gives rise to an experimental criterion with which to probe selection on gene expression fluctuations. © 2017 The Author(s).

Genetic effects of radon 222 in a population of Drosophila melanogaster chronically exposed; Efectos geneticos del radon 222 en una poblacion de Drosophila melanogaster cronicamente expuesta

Energy Technology Data Exchange (ETDEWEB)

Salceda, V M [Instituto Nacional de Investigaciones Nucleares, A.P. 18-1027, 11801 Mexico D.F. (Mexico). Dept. de Biologia

1997-07-01

It was investigated the mutagenic effect of Radon 222 during a experimental period of 11 generations. In this lapse Drosophila melanogaster larvae line Canton-S were maintained in a radon atmosphere. In each test generation had been extracted males, consequently exposed to radiation which were subjected to a crossing series with a bearer marker genes of according to the Wallace experimental design (1956). Due to the experimental conditions it only was determined the recessive lethal mutations frequency for the second chromosome in the 1,4,7 and 11 generations. Of all study it was conduced in parallel way a non-treated witness population. The concentrations at which was subjected the experimental population varied of generation to generation from 12 {+-} 2 to 43 {+-} 5 kBq/m{sup 3}. Our analysis correspond to lethality determination in 1182 second chromosomes distributed between two populations and the different exposition generations. The study allow to determine the respective frequencies of recessive lethal genes varying according to the population and/or generation between 10.53 and 22.02%. The statistical analysis of data did not show significant differences among the different populations. (Author)

Evidence of animal mtDNA recombination between divergent populations of the potato cyst nematode Globodera pallida.

Science.gov (United States)

Hoolahan, Angelique H; Blok, Vivian C; Gibson, Tracey; Dowton, Mark

2012-03-01

Recombination is typically assumed to be absent in animal mitochondrial genomes (mtDNA). However, the maternal mode of inheritance means that recombinant products are indistinguishable from their progenitor molecules. The majority of studies of mtDNA recombination assess past recombination events, where patterns of recombination are inferred by comparing the mtDNA of different individuals. Few studies assess contemporary mtDNA recombination, where recombinant molecules are observed as direct mosaics of known progenitor molecules. Here we use the potato cyst nematode, Globodera pallida, to investigate past and contemporary recombination. Past recombination was assessed within and between populations of G. pallida, and contemporary recombination was assessed in the progeny of experimental crosses of these populations. Breeding of genetically divergent organisms may cause paternal mtDNA leakage, resulting in heteroplasmy and facilitating the detection of recombination. To assess contemporary recombination we looked for evidence of recombination between the mtDNA of the parental populations within the mtDNA of progeny. Past recombination was detected between a South American population and several UK populations of G. pallida, as well as between two South American populations. This suggests that these populations may have interbred, paternal mtDNA leakage occurred, and the mtDNA of these populations subsequently recombined. This evidence challenges two dogmas of animal mtDNA evolution; no recombination and maternal inheritance. No contemporary recombination between the parental populations was detected in the progeny of the experimental crosses. This supports current arguments that mtDNA recombination events are rare. More sensitive detection methods may be required to adequately assess contemporary mtDNA recombination in animals.

Population doses from naturally occurring radiation in Norway

International Nuclear Information System (INIS)

Stranden, E.

The main purpose of this work was to study the radiological consequences of the introduction of building materials with high concentrations of radioactivity and to analyse the impact of a reduction of the ventilation rates in houses on the population dose from inhalation of natural airborne radioactivity. The general problems of radioactivity in building materials are discussed. Measurements of radioactivity in building materials from different parts of the country are reported, together with theoretical calculations of the gamma doses in houses. These calculations are compared with experimental results and earlier measurements of the indoor gamma radiation in Norway. Measurements of the outdoor gamma radiation in different parts of Norway are presented. These results are used together with earlier measurements of the gamma radiation inside houses to calculate the average, and variations of population dose from this radiation. An experimental study on the radon concentrations inside different types of dwellings, and a discussion of the respiratory dose received by the inhalation of radon daughters is presented. Some factors that may have influence upon the radon concentrations are also discussed. A method for measurement of radon and thoron daughters in air is discussed. The possible radiological effects of an increased radon concentration in houses are discussed. (Auth.)

Redistribution population data across a regular spatial grid according to buildings characteristics

Science.gov (United States)

Calka, Beata; Bielecka, Elzbieta; Zdunkiewicz, Katarzyna

2016-12-01

Population data are generally provided by state census organisations at the predefined census enumeration units. However, these datasets very are often required at userdefined spatial units that differ from the census output levels. A number of population estimation techniques have been developed to address these problems. This article is one of those attempts aimed at improving county level population estimates by using spatial disaggregation models with support of buildings characteristic, derived from national topographic database, and average area of a flat. The experimental gridded population surface was created for Opatów county, sparsely populated rural region located in Central Poland. The method relies on geolocation of population counts in buildings, taking into account the building volume and structural building type and then aggregation the people total in 1 km quadrilateral grid. The overall quality of population distribution surface expressed by the mean of RMSE equals 9 persons, and the MAE equals 0.01. We also discovered that nearly 20% of total county area is unpopulated and 80% of people lived on 33% of the county territory.

Chironomidae (Insecta: Diptera) Collected from Hydrilla Verticillata ...

African Journals Online (AJOL)

A survey of the aquatic weed Hydrilla verticillata was conducted in selected Kenyan and Ugandan lakes, and emerging chironomid adults were collected from samples of Hydrilla and seven other aquatic macrophytes. Hydrilla was absent from Lake Victoria, in sites where it previously occurred. Hydrilla was found in four of ...

Bayesian inference reveals positive but subtle effects of experimental fishery closures on marine predator demographics

Science.gov (United States)

Barham, Barbara J.; Barham, Peter J.; Campbell, Kate J.; Crawford, Robert J. M.; Grigg, Jennifer; Horswill, Cat; Morris, Taryn L.; Pichegru, Lorien; Steinfurth, Antje; Weller, Florian; Winker, Henning

2018-01-01

Global forage-fish landings are increasing, with potentially grave consequences for marine ecosystems. Predators of forage fish may be influenced by this harvest, but the nature of these effects is contentious. Experimental fishery manipulations offer the best solution to quantify population-level impacts, but are rare. We used Bayesian inference to examine changes in chick survival, body condition and population growth rate of endangered African penguins Spheniscus demersus in response to 8 years of alternating time–area closures around two pairs of colonies. Our results demonstrate that fishing closures improved chick survival and condition, after controlling for changing prey availability. However, this effect was inconsistent across sites and years, highlighting the difficultly of assessing management interventions in marine ecosystems. Nevertheless, modelled increases in population growth rates exceeded 1% at one colony; i.e. the threshold considered biologically meaningful by fisheries management in South Africa. Fishing closures evidently can improve the population trend of a forage-fish-dependent predator—we therefore recommend they continue in South Africa and support their application elsewhere. However, detecting demographic gains for mobile marine predators from small no-take zones requires experimental time frames and scales that will often exceed those desired by decision makers. PMID:29343602

Frictions, Persistence, and Central Bank Policy in an Experimental Dynamic Stochastic General Equilibrium Economy

NARCIS (Netherlands)

Noussair, C.N.; Pfajfar, D.; Zsiros, J.

2011-01-01

New Keynesian dynamic stochastic general equilibrium models are the principal paradigm currently employed for central bank policymaking. In this paper, we construct experimental economies, populated with human subjects, with the structure of a New Keynesian DSGE model. We give individuals monetary

Gene expression profiling of two distinct neuronal populations in the rodent spinal cord.

Directory of Open Access Journals (Sweden)

Jesper Ryge

Full Text Available BACKGROUND: In the field of neuroscience microarray gene expression profiles on anatomically defined brain structures are being used increasingly to study both normal brain functions as well as pathological states. Fluorescent tracing techniques in brain tissue that identifies distinct neuronal populations can in combination with global gene expression profiling potentially increase the resolution and specificity of such studies to shed new light on neuronal functions at the cellular level. METHODOLOGY/PRINCIPAL FINDINGS: We examine the microarray gene expression profiles of two distinct neuronal populations in the spinal cord of the neonatal rat, the principal motor neurons and specific interneurons involved in motor control. The gene expression profiles of the respective cell populations were obtained from amplified mRNA originating from 50-250 fluorescently identified and laser microdissected cells. In the data analysis we combine a new microarray normalization procedure with a conglomerate measure of significant differential gene expression. Using our methodology we find 32 genes to be more expressed in the interneurons compared to the motor neurons that all except one have not previously been associated with this neuronal population. As a validation of our method we find 17 genes to be more expressed in the motor neurons than in the interneurons and of these only one had not previously been described in this population. CONCLUSIONS/SIGNIFICANCE: We provide an optimized experimental protocol that allows isolation of gene transcripts from fluorescent retrogradely labeled cell populations in fresh tissue, which can be used to generate amplified aRNA for microarray hybridization from as few as 50 laser microdissected cells. Using this optimized experimental protocol in combination with our microarray analysis methodology we find 49 differentially expressed genes between the motor neurons and the interneurons that reflect the functional

Phenotypic plasticity and population differentiation in an ongoing species invasion.

Directory of Open Access Journals (Sweden)

Silvia Matesanz

Full Text Available The ability to succeed in diverse conditions is a key factor allowing introduced species to successfully invade and spread across new areas. Two non-exclusive factors have been suggested to promote this ability: adaptive phenotypic plasticity of individuals, and the evolution of locally adapted populations in the new range. We investigated these individual and population-level factors in Polygonum cespitosum, an Asian annual that has recently become invasive in northeastern North America. We characterized individual fitness, life-history, and functional plasticity in response to two contrasting glasshouse habitat treatments (full sun/dry soil and understory shade/moist soil in 165 genotypes sampled from nine geographically separate populations representing the range of light and soil moisture conditions the species inhabits in this region. Polygonum cespitosum genotypes from these introduced-range populations expressed broadly similar plasticity patterns. In response to full sun, dry conditions, genotypes from all populations increased photosynthetic rate, water use efficiency, and allocation to root tissues, dramatically increasing reproductive fitness compared to phenotypes expressed in simulated understory shade. Although there were subtle among-population differences in mean trait values as well as in the slope of plastic responses, these population differences did not reflect local adaptation to environmental conditions measured at the population sites of origin. Instead, certain populations expressed higher fitness in both glasshouse habitat treatments. We also compared the introduced-range populations to a single population from the native Asian range, and found that the native population had delayed phenology, limited functional plasticity, and lower fitness in both experimental environments compared with the introduced-range populations. Our results indicate that the future spread of P. cespitosum in its introduced range will likely be

Reduction of population of cabbage pests plutela maculipennis curtis and crocidolomia binotalis zell as affected by the release of radiosterilized moths

Energy Technology Data Exchange (ETDEWEB)

Hoedaya, M.S.; Sutrisno, S.; Nasroh, A.; Sastradihardja, S.I. (National Atomic Energy Agency, Jakarta (Indonesia). Pasar Djumat Research Centre)

1983-10-01

Moths of plutella maculipennis curtis and crocidolimia binotalis zell radiosterilized with 30 Krad and 40 Krad of gamma radiation respectively were released into a laboratory-cage of 90 cm x 60 cm x 60 cm, a field-cage of 2 m x 2 m x 2 m and an experimental plot of 10 m x 15 m to study their effect on the reduction of F1-population. The release of 450 irradiated moths in the laboratory-cage containing 50 unirradiated moths can reduce the F1-population of plutella maculipennis and crocidolomia binotalis by 61.1% and 65.3% respectively, while in the field-cage the F1-population of plutella maculipennis and crocidolomia binotalis decreased by 55.6% and 50.55% respectively. The release of about 4,500 irradiated crocidolomia binotalis into an experimental plot containing 500 normal moths can reduce the F1-population by 41.02% in the dry season and 50.55% in the rainy season. The release of about 5,000 irradiated moths of plutella maculipennis into an experimental plot containing about 350 moths of natural population resulted in a reduction of egg hatch from 85.9% in the unreleased plot to 17.0% in the released plot.

Population of delayed-neutron granddaughter states and the optical potential

International Nuclear Information System (INIS)

Schenter, R.E.; Mann, F.M.; Warner, R.A.; Reeder, P.L.

1982-08-01

Using a statistical treatment of beta decay and the Hauser-Feshbach model of nuclear reactions, calculations were made and compared to recent experimental measurements of the population of granddaughter states of several delayed neutron precursors ( 144 145 147 Cs and 96 Rb). Emphasis of this paper is on the sensitivity and interpretation of experimental results to various standard low energy neutron optical model potentials and variations in their forms and parameters. Results for these precursors show qualitative agreement with experiment for all the optical potential models used and good quantitative agreement for two (Moldauer and Becchetti-Greenlees). Questions such as (N-Z) terms, deformation and nonlocality dependence are presented

Experimental, statistical, and biological models of radon carcinogenesis

International Nuclear Information System (INIS)

Cross, F.T.

1991-09-01

Risk models developed for underground miners have not been consistently validated in studies of populations exposed to indoor radon. Imprecision in risk estimates results principally from differences between exposures in mines as compared to domestic environments and from uncertainties about the interaction between cigarette-smoking and exposure to radon decay products. Uncertainties in extrapolating miner data to domestic exposures can be reduced by means of a broad-based health effects research program that addresses the interrelated issues of exposure, respiratory tract dose, carcinogenesis (molecular/cellular and animal studies, plus developing biological and statistical models), and the relationship of radon to smoking and other copollutant exposures. This article reviews experimental animal data on radon carcinogenesis observed primarily in rats at Pacific Northwest Laboratory. Recent experimental and mechanistic carcinogenesis models of exposures to radon, uranium ore dust, and cigarette smoke are presented with statistical analyses of animal data. 20 refs., 1 fig

Evolution favors protein mutational robustness in sufficiently large populations

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Venturelli Ophelia S

2007-07-01

Full Text Available Abstract Background An important question is whether evolution favors properties such as mutational robustness or evolvability that do not directly benefit any individual, but can influence the course of future evolution. Functionally similar proteins can differ substantially in their robustness to mutations and capacity to evolve new functions, but it has remained unclear whether any of these differences might be due to evolutionary selection for these properties. Results Here we use laboratory experiments to demonstrate that evolution favors protein mutational robustness if the evolving population is sufficiently large. We neutrally evolve cytochrome P450 proteins under identical selection pressures and mutation rates in populations of different sizes, and show that proteins from the larger and thus more polymorphic population tend towards higher mutational robustness. Proteins from the larger population also evolve greater stability, a biophysical property that is known to enhance both mutational robustness and evolvability. The excess mutational robustness and stability is well described by mathematical theory, and can be quantitatively related to the way that the proteins occupy their neutral network. Conclusion Our work is the first experimental demonstration of the general tendency of evolution to favor mutational robustness and protein stability in highly polymorphic populations. We suggest that this phenomenon could contribute to the mutational robustness and evolvability of viruses and bacteria that exist in large populations.

Population transcriptomics of life-history variation in the genus Salmo

DEFF Research Database (Denmark)

Giger, T.; Excoffier, L.; Amstutz, U.

2008-01-01

with physiological changes that are likely to be involved in preadaptations to seawater in anadromous populations of the genus Salmo, one of which was identified to encode for nucleophosmin 1. Our findings thus provide new molecular insights into salmonid life-history variation, opening new perspectives in the study......In this study, we demonstrate the power of applying complementary DNA (cDNA) microarray technology to identifying candidate loci that exhibit subtle differences in expression levels associated with a complex trait in natural populations of a nonmodel organism. Using a highly replicated experimental...... design involving 180 cDNA microarray experiments, we measured gene-expression levels from 1098 transcript probes in 90 individuals originating from six brown trout (Salmo trutta) and one Atlantic salmon (Salmo salar) population, which follow either a migratory or a sedentary life history. We identified...

Population Transfer between Two Quantum States by Piecewise Chirping of Femtosecond Pulses: Theory and Experiment

International Nuclear Information System (INIS)

Zhdanovich, S.; Shapiro, E. A.; Shapiro, M.; Hepburn, J. W.; Milner, V.

2008-01-01

We propose and experimentally demonstrate the method of population transfer by piecewise adiabatic passage between two quantum states. Coherent excitation of a two-level system with a train of ultrashort laser pulses is shown to reproduce the effect of an adiabatic passage, conventionally achieved with a single frequency-chirped pulse. By properly adjusting the amplitudes and phases of the pulses in the excitation pulse train, we achieve complete and robust population transfer to the target state. The piecewise nature of the process suggests a possibility for the selective population transfer in complex quantum systems

Investment in constitutive immune function by north American elk experimentally maintained at two different population densities

Science.gov (United States)

Cynthia J. Downs; Kelley M. Stewart; Brian L. Dick; Daniel E Crocker

2015-01-01

Natural selection favors individuals that respond with effective and appropriate immune responses to macro or microparasites. Animals living in populations close to ecological carrying capacity experience increased intraspecific competition, and as a result are often in poor nutritional condition. Nutritional condition, in turn, affects the amount of endogenous...

Response of mosquitofish (Gambusia affinis) populations to seasonally unpredictable perturbations

Energy Technology Data Exchange (ETDEWEB)

Horn, M.J.; Stewart, A.J.

1990-07-01

Many questions remain unresolved about the linkages between life history attributes of fishes and the tactics that these organisms employ in response to environmental uncertainty. Such questions include (1). If a perturbation affects the entire ecosystem, what are the consequences for a given population of fish (2) What tactics can a fish employ to increase its chances of leaving offspring (3) Do fish respond differently to such perturbations depending on the season (4) How do these changes relate to the overall resilience of the population The research reported here was designed to address such questions. Mosquito fish (Gambusia affinis) populations in thirteen experimental ponds at Oak Ridge National Laboratory were sampled ten times between June 1988, and July 1989 in response to a series of chemical disturbances. During each sampling period the population size and total biomass of Gambusia in each pond was estimated using photographs and a length weight regression. Size-frequency histograms were used to examine seasonal and dose-related changes in population structure. Lipid content and reproductive allotment were measured for a series of fish from each pond on all dates to explore the energy allocation patterns at the individual. 106 refs., 38 figs., 16 tabs.

Reach and effectiveness of a community program to reduce smoking among ethnic Turkish residents in Rotterdam, the Netherlands: a quasi-experimental design

NARCIS (Netherlands)

Nierkens, Vera; Kunst, Anton E.; de Vries, Hein; Voorham, Toon A. J.; Stronks, Karien

2013-01-01

Community interventions have been considered promising strategies to reduce smoking prevalence among ethnic minority populations. We assessed the reach and effectiveness of a community program targeted at the Turkish population in Rotterdam, the Netherlands. The study had a quasi-experimental

The reduction of population of cabbage pests plutela maculipennis curtis and crocidolomia binotalis zell as affected by the release of radiosterilized moths

International Nuclear Information System (INIS)

Hoedaya, M.S.; Sutrisno, S.; Nasroh, A.; Sastradihardja, S.I.

1983-01-01

Moths of plutella maculipennis curtis and crocidolimia binotalis zell radiosterilized with 30 Krad and 40 Krad of gamma radiation respectively were released into a laboratory-cage of 90 cm x 60 cm x 60 cm, a field-cage of 2 m x 2 m x 2 m and an experimental plot of 10 m x 15 m to study their effect on the reduction of F1-population. The release of 450 irradiated moths in the laboratory-cage containing 50 unirradiated moths can reduce the F1-population of plutella maculipennis and crocidolomia binotalis by 61.1% and 65.3% respectively. While in the field-cage the F1-population of plutella maculipennis and crocidolomia binotalis decreased by 55.6% and 50.55% respectively. The release of about 4.500 irradiated crocidolomia binotalis into an experimental plot containing 500 normal moths can reduce the F1-population by 41.02% in the dry season and 50.55% in the rainy season. The release of about 5.000 irradiated moths of plutella maculipennis into an experimental plot containing about 350 moths of natural population, resulted in a reduction of egg hatch from 85.9% in the unreleased plot to 17.0% in the released plot. (author)

The impact of the Cyanamid Canada Co. discharges to benthic invertebrates in the Welland River in Niagara falls, Canada.

Science.gov (United States)

Dickman, M; Rygiel, G

1993-06-01

: In 1986, the International Joint Commission (IJC) recommended that the Niagara River watershed should be declared an Area of Concern (AOC). This IJC recommendation was ratified by the 4 signatories of the Great Lakes Water Quality Agreement. In order to delist an AOC, it is necessary to locate any areas of impairment within the watershed and carry out remediation projects that permit uses that were previously impaired. To this end we attempted to determine whether or not the sediments at 7 study sites near the Cyanamid Canada (Chemical) Co. were contaminated at levels that would result in the impairment of the natural biota which inhabit the watershed.The Cyanamid Canada (Chemical) Co. discharges ammonia wastes, cyanide, arsenic and a variety of heavy metals into treatment systems which ultimately discharge to the Welland River, the major Canadian tributary to the Niagara River. This portion of the Welland River near the factory was designated a Provincially significant (Class one) wetlands by the Ontario Ministry of Natural Resources. In 1986, the mean discharge to a creek from Cyanamid Canada Co. was 27,342 m(3) per day (MOE, 1987). Similar discharge volumes occurred in 1989. In 1991, the total discharge was 25,000 m(3) per day (MOE, 1991).The majority of the benthic invertebrates collected from the study area were pollution tolerant taxa (e.g., sludge worms constituted 68% of all the organisms collected). The lowest chironomid densities were observed at stations 1, 2, and 4, which were the only stations situated close to Cyanamid's discharge pipes. The absence, of clams and mayflies which burrow to greater depths than do chironomids and sludge worms, probably reflects the inability of the deeper dwelling burrowers to tolerate the contaminants which we recorded at these 3 stations. The absence of all crustaceans from these same 3 stations (stations 1, 2 and 4) when coupled with their low biotic diversity and the elevated heavy metal concentrations in the

Hexabromocyclododecane affects benthic-pelagic coupling in an experimental ecosystem

International Nuclear Information System (INIS)

Bradshaw, Clare; Näslund, Johan; Hansen, Joakim; Kozlowsky-Suzuki, Betina; Sundström, Bo; Gustafsson, Kerstin

2015-01-01

Hexabromocyclododecane (HBCDD) is an additive brominated flame retardant and a recognized PBT chemical. However, little is known about its effects on coastal species, and even less on ecosystem effects. We investigated the dose–response effects of HBCDD over 8 months in 1000 L experimental mesocosms assembled from coastal Baltic Sea ecosystem components. HBCDD was added via spiked plankton material and a range of structural and functional endpoints were measured during the experiment. Increasing HBCDD concentration decreased the biomass of large Macoma balthica, resulting in a decreased recirculation of nutrients to the water. Changes in plankton communities were also observed, either due to direct toxic HBCDD effects or indirect via changes in benthic-pelagic coupling of nutrients. Such complex ecosystem responses can only be quantified and understood by using realistic experimental set-ups, and including knowledge of system-specific ecological interactions. This is the first study of HBCDD effects on ecosystem level. - Graphical abstract: HBCDD caused direct effects on the population structure of sediment-dwelling Macoma balthica and on the plankton community. Indirect HBCDD effects via reduced nutrient remineralization by M. balthica affected nutrient levels in the water, likely leading to additional changes in plankton community structure. Seasonal effects were large and affected the whole system including nutrient dynamics as well as plankton community structure. Display Omitted - Highlights: • HBCDD caused effects on benthic population structure and ecosystem function. • Large seasonal effects highlight the importance of using relevant experimental conditions. • A realistic exposure pathway was applied by using HBCDD enriched plankton material. • This is the first study of HBCDD effects on ecosystem level, coupling benthic and pelagic communities. - HBCDD has a dose-dependent effect on benthic-pelagic coupling.

Cyanobacterial populations in biological soil crusts of the northwest Negev Desert, Israel - effects of local conditions and disturbance.

Science.gov (United States)

Hagemann, Martin; Henneberg, Manja; Felde, Vincent J M N L; Berkowicz, Simon M; Raanan, Hagai; Pade, Nadin; Felix-Henningsen, Peter; Kaplan, Aaron

2016-11-02

Biological soil crusts (BSCs) fulfill numerous ecological functions in arid and semiarid areas. Cyanobacteria are important BSC organisms, which are responsible for carbon fixation, N 2 -fixation, and binding of soil via extracellular polysaccharides. The cyanobacterial populations were characterized in different sampling plots established in three experimental stations along a rainfall gradient within NW Negev Desert, Israel. Cyanobacterial crust thickness and osmolyte accumulation therein decreased in plots with lower moisture. The cyanobacterial population structure also changed in different plots. We observed an increase of subsection III cyanobacteria such as Microcoleus spp. and Leptolyngbya sp. and a decreasing proportion of strains belonging to subsections I and IV in drier areas on the rainfall gradient. This population shift was also observed in the sampling plots, which were situated at various relief positions within the sand dune experimental sites. We also characterized the cyanobacterial populations within mechanically disturbed plots. After four years, they reached between 80 and 50% of the control populations in the northern-most and southern stations, respectively. Our results suggest that the cyanobacterial population is sensitive not only to macroscale factors but may also be subject to local climate variations and that four years were insufficient for complete recovery of the cyanobacterial population. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Variation of Potential Yield of Hybrid Population of Robusta coffee (Coffea canepor

Directory of Open Access Journals (Sweden)

Novie Pranata Erdiansyah

2014-08-01

Full Text Available The low yield of Robusta coffee in Indonesia may be due to the use of planting materials derived from seeds. The research objective was to determine the variation of Robusta coffee yield wich local propagated by using seeds. The study was conducted in Kaliwining experimental Station of ICCRI (Indonesian Coffee andCocoa Research Institute. There were two populations observed. Number of progeny used in this study were 186 genotypes consisting of two groups from crossesBP 409 x Q 121 with 89 progenies and BP 961 x BP 409 with 81 progenies. The results showed that planting materials from seeds exhibit properties mixed results.Progeny that have the best results (yield more than 2 ton/ha not more than 5% of the total population. In both populations there is a big difference between the progenythat has high and low yield. Highest yield B population could reach 2,500 kg/ha and the C population reached 2,200 kg/ha. The lowest yield can only produce coffee270 kg/ha in populations B and 120 kg/ha in population C.Key words: Coffea canephora, hybrid, variation, yield

Radioresistance of populations of bank voles Clethrionomys glareolus in radionuclide-contaminated areas

International Nuclear Information System (INIS)

Il'enko, A.I.; Krapivko, T.P.

1994-01-01

Contamination of extended territories with radionuclides renders the monitoring of natural populations in their habitats an important work to be done in order to determine the directions of evolution caused by long-term exposure to ionizing radiation. In view of this, many years of field and experimental radioecological studies were devoted to animal populations that inhabit the territories contaminated with 137 Cs after the Chernobyl Power Plant disaster. Special emphasis was placed on the investigation of the time course of radiosensitivity of mammalian populations over several generations as a general index of adaptive processes developing in an area with an elevated radiation background. The authors monitored the population of the European bank vole, a species known for its high spontaneous resistance to radiation. In optimal environmental conditions, it has LD 50/30 = 9.7 Gy. The reaction of bank vole populations to radioactive contamination of their environment primarily increases the rate of variation of sensitivity to ionizing radiation. This results in a continuous increase in the radioresistance of the populations to a certains table level. The findings suggest that adaptive processes occur in natural mammalian populations subjected to chronic ionizing irradiation

Cycle frequency in standard Rock-Paper-Scissors games: Evidence from experimental economics

Science.gov (United States)

Xu, Bin; Zhou, Hai-Jun; Wang, Zhijian

2013-10-01

The Rock-Paper-Scissors (RPS) game is a widely used model system in game theory. Evolutionary game theory predicts the existence of persistent cycles in the evolutionary trajectories of the RPS game, but experimental evidence has remained to be rather weak. In this work, we performed laboratory experiments on the RPS game and analyzed the social-state evolutionary trajectories of twelve populations of N=6 players. We found strong evidence supporting the existence of persistent cycles. The mean cycling frequency was measured to be 0.029±0.009 period per experimental round. Our experimental observations can be quantitatively explained by a simple non-equilibrium model, namely the discrete-time logit dynamical process with a noise parameter. Our work therefore favors the evolutionary game theory over the classical game theory for describing the dynamical behavior of the RPS game.

Reed beds may facilitate transfer of tributyltin from aquatic to terrestrial ecosystems through insect vectors in the Archipelago Sea, SW Finland.

Science.gov (United States)

Lilley, Thomas M; Meierjohann, Axel; Ruokolainen, Lasse; Peltonen, Jani; Vesterinen, Eero; Kronberg, Leif; Nikinmaa, Mikko

2012-08-01

Due to their adsorptive behavior, organotin compounds (OTCs), such as tributyltin (TBT), are accumulated in aquatic sediments. They resist biodegradation and, despite a ban in 2008, are a potential source for future exposure. Sediment OTCs have mostly been measured from sites of known high concentrations such as ports, shipping lanes, and marine dredging waste sites. The possible flow of OTCs from marine to terrestrial ecosystems, however, has not been studied. In the present study, the authors assessed whether sediments in common reed beds (Phragmites australis) accumulate TBT and whether chironomid (Diptera: Chironomidae) communities developing in reed-bed sediments act as vectors in the transfer of TBT from aquatic to terrestrial ecosystems in the Airisto channel, Archipelago Sea. The authors also investigated whether distance from the only known source and depth and TBT concentration of the adjacent shipping lane affect reed-bed concentrations. Thirty-six sites along the Airisto channel were sampled at 2-km intervals with triplicate samples from reed beds and the adjacent shipping lane for sediment and seven reed-bed sites for chironomids, and these were analyzed with an solid phase extraction liquid chromatography tamdem mass spectrometry method. The closer to the source the sample site was, the higher the measured TBT concentrations were; and the deeper the shipping lane, the lower the concentration of TBT in reed-bed sediments. The chironomid TBT concentrations correlated with reed-bed sediment TBT concentrations and showed evidence of accumulation. Therefore, TBT may be transferred, through the food web, from aquatic to terrestrial ecosystems relatively close to a source through ecosystem boundaries, such as common reed beds, which are areas of high insect biomass production in the Archipelago Sea. Copyright © 2012 SETAC.

Climate-induced changes in the trophic status of a Central European lake

Directory of Open Access Journals (Sweden)

Thomas HÜBENER

2009-02-01

Full Text Available We present a case study of the development of Sacrower See, a stratified, eutrophic lake in northeastern Germany, over the past 13,000 years. Total epilimnetic phosphorus (TP concentrations were reconstructed quantitatively using a diatom-TP transfer function. Fossil chironomid assemblages were used to support the trophic reconstruction and helped assessing past hypolimnetic oxygen availability. The results indicate eutrophic and anoxic conditions during the Younger Dryas cold period (~12,700-11,600 cal. BP preceding the present interglacial. Throughout the early and mid-Holocene (~11,600-4000 cal. BP stable oligo- to mesotrophic conditions with diatom-inferred TP values of ~20 μg L-1 prevailed. First evidence of increasing Holocene TP is recorded at ~3500 cal. BP associated with Bronze Age human impact and for the past 900 years diatoms indicate increasing TP values of 30-60 μg L-1. During the early Holocene and the past two millennia chironomids indicated anoxic hypolimnetic conditions. The chironomid fauna is considered typical of oligo- to mesotrophic lakes. As a consequence of strongly increased primary production the hypolimnion of Sacrower See became anoxic again during the past 140 years. Our results indicate that highly productive eutrophic conditions can exist prior to cultural eutrophication. At Sacrower See the shift from eutrophic conditions in the Lateglacial to oligo-mesotrophic conditions in the early and mid-Holocene was associated with the climatic warming at the Younger Dryas/Holocene transition. The high productive state during the cold Younger Dryas is associated with changes in seasonality: the prolonged winters caused longer ice cover, stronger stratification, anoxia in the hypolimnion, and consequent internal phosphorus loading. During the warm Holocene, however, hypolimnetic anoxia and internal phosphorus loading decreased significantly, resulting in a substantially lower productivity.

Experimental and numerical investigation of a phase-only control mechanism in the linear intensity regime.

Science.gov (United States)

Brühl, Elisabeth; Buckup, Tiago; Motzkus, Marcus

2018-06-07

Mechanisms and optimal experimental conditions in coherent control still intensely stimulate debates. In this work, a phase-only control mechanism in an open quantum system is investigated experimentally and numerically. Several parameterizations for femtosecond pulse shaping (combination of chirp and multipulses) are exploited in transient absorption of a prototype organic molecule to control population and vibrational coherence in ground and excited states. Experimental results are further numerically simulated and corroborated with a four-level density-matrix model, which reveals a phase-only control mechanism based on the interaction between the tailored phase of the excitation pulse and the induced transient absorption. In spite of performing experiment and numerical simulations in the linear regime of excitation, the control effect amplitude depends non-linearly on the excitation energy and is explained as a pump-dump control mechanism. No evidence of single-photon control is observed with the model. Moreover, our results also show that the control effect on the population and vibrational coherence is highly dependent on the spectral detuning of the excitation spectrum. Contrary to the popular belief in coherent control experiments, spectrally resonant tailored excitation will lead to the control of the excited state only for very specific conditions.

"India Population Projects" in Karnataka.

Science.gov (United States)

Reddy, P H; Badari, V S

1991-12-01

An overview, objectives, implementation, and research and evaluation studies of 2 India Population Projects in Karnataka are presented. The India Population Project I (IPP-I) was conducted in Karnataka and Uttar Pradesh. India Population Project III (IPP-III) took place between 1984-92 in 6 districts of Karnataka: Belgaum, Bijapur, Dharwad, Bidar, Gulbarga, and Raichur, and 4 districts in Kerala. The 6 districts in Karnataka accounted for 36% (13.2 million) of the total national population. The project cost was Rs. 713.1 million which was shared by the World Bank, and the Indian national and regional government. Due to poor past performance, these projects were undertaken to improve health and family welfare status. Specific project objectives are outlined. IPP-I included an urban component, and optimal Government of India program, and an intensive rural initiative. The urban program aimed to improved pre- and postnatal services and facilities, and the family planning (FP) in Bangalore city. The rural program was primarily to provide auxiliary nurse-midwives and hospitals and clinics, and also supplemental feeding program for pregnant and nursing mothers and children up to 2 years. The government program provided FP staff and facilities. IPP-I had 3 units to oversee building construction, to recruit staff and provide supplies and equipment, and to establish a Population Center. IPP-III was concerned with service delivery; information, education, and communication efforts (IEC) and population education; research and evaluation; and project management. Both projects contributed significantly to improving the infrastructure. A brief account of the types and kinds of studies undertaken is given. Studies were grouped into longitudinal studies of fertility, mortality, and FP; management information and evaluation systems for health and family welfare programs; experimental strategies; and other studies. Research and evaluation studies in IPP-III encompassed studies in

Complexity in the biological recovery of Tatra Mountain lakes from acidification

Czech Academy of Sciences Publication Activity Database

Stuchlík, Evžen; Bitušík, P.; Hardekopf, D.W.; Hořická, Zuzana; Kahounová, M.; Tátosová, J.; Vondrák, Daniel; Dočkalová, Kateřina

2017-01-01

Roč. 228, č. 5 (2017), č. článku 184. ISSN 0049-6979 R&D Projects: GA ČR(CZ) GA14-09231S Institutional support: RVO:60077344 Keywords : phytoplankton * zooplankton * chironomids * oligotrophication * eutrophication Subject RIV: DA - Hydrology ; Limnology OBOR OECD: Marine biology, freshwater biology, limnology Impact factor: 1.702, year: 2016

Quantifying the impact of woodpecker predation on population dynamics of the emerald ash borer (Agrilus planipennis.

Directory of Open Access Journals (Sweden)

David E Jennings

Full Text Available The emerald ash borer (EAB, Agrilus planipennis, is an invasive beetle that has killed millions of ash trees (Fraxinus spp. since it was accidentally introduced to North America in the 1990s. Understanding how predators such as woodpeckers (Picidae affect the population dynamics of EAB should enable us to more effectively manage the spread of this beetle, and toward this end we combined two experimental approaches to elucidate the relative importance of woodpecker predation on EAB populations. First, we examined wild populations of EAB in ash trees in New York, with each tree having a section screened to exclude woodpeckers. Second, we established experimental cohorts of EAB in ash trees in Maryland, and the cohorts on half of these trees were caged to exclude woodpeckers. The following spring these trees were debarked and the fates of the EAB larvae were determined. We found that trees from which woodpeckers were excluded consistently had significantly lower levels of predation, and that woodpecker predation comprised a greater source of mortality at sites with a more established wild infestation of EAB. Additionally, there was a considerable difference between New York and Maryland in the effect that woodpecker predation had on EAB population growth, suggesting that predation alone may not be a substantial factor in controlling EAB. In our experimental cohorts we also observed that trees from which woodpeckers were excluded had a significantly higher level of parasitism. The lower level of parasitism on EAB larvae found when exposed to woodpeckers has implications for EAB biological control, suggesting that it might be prudent to exclude woodpeckers from trees when attempting to establish parasitoid populations. Future studies may include utilizing EAB larval cohorts with a range of densities to explore the functional response of woodpeckers.

Quantifying the impact of woodpecker predation on population dynamics of the emerald ash borer (Agrilus planipennis).

Science.gov (United States)

Jennings, David E; Gould, Juli R; Vandenberg, John D; Duan, Jian J; Shrewsbury, Paula M

2013-01-01

The emerald ash borer (EAB), Agrilus planipennis, is an invasive beetle that has killed millions of ash trees (Fraxinus spp.) since it was accidentally introduced to North America in the 1990s. Understanding how predators such as woodpeckers (Picidae) affect the population dynamics of EAB should enable us to more effectively manage the spread of this beetle, and toward this end we combined two experimental approaches to elucidate the relative importance of woodpecker predation on EAB populations. First, we examined wild populations of EAB in ash trees in New York, with each tree having a section screened to exclude woodpeckers. Second, we established experimental cohorts of EAB in ash trees in Maryland, and the cohorts on half of these trees were caged to exclude woodpeckers. The following spring these trees were debarked and the fates of the EAB larvae were determined. We found that trees from which woodpeckers were excluded consistently had significantly lower levels of predation, and that woodpecker predation comprised a greater source of mortality at sites with a more established wild infestation of EAB. Additionally, there was a considerable difference between New York and Maryland in the effect that woodpecker predation had on EAB population growth, suggesting that predation alone may not be a substantial factor in controlling EAB. In our experimental cohorts we also observed that trees from which woodpeckers were excluded had a significantly higher level of parasitism. The lower level of parasitism on EAB larvae found when exposed to woodpeckers has implications for EAB biological control, suggesting that it might be prudent to exclude woodpeckers from trees when attempting to establish parasitoid populations. Future studies may include utilizing EAB larval cohorts with a range of densities to explore the functional response of woodpeckers.

Breeding territory size affects fitness : an experimental study on competition at the individual level

NARCIS (Netherlands)

Both, C; Visser, ME

2000-01-01

1. Descriptive studies have shown that the annual mean fecundity and survival in bird populations decline as density increases. Experimental studies in which breeding density has been manipulated show that density causally affects reproduction in some but not other species. 2. In a 3-year study on

Breeding territory size affects fitness: an experimental study on competition at the individual level

NARCIS (Netherlands)

Both, C.; Visser, M.E.

2000-01-01

1. Descriptive studies have shown that the annual mean fecundity and survival in bird populations decline as density increases. Experimental studies in which breeding density has been manipulated show that density causally affects reproduction in some but not other species. 2. In a 3-year study on

New structures for goat corrals to control peridomestic populations of Triatoma infestans (Hemiptera: Reduviidae in the Gran Chaco of Argentina

Directory of Open Access Journals (Sweden)

David Eladio Gorla

2013-05-01

Full Text Available Goat production is an important economic activity for rural communities in the Gran Chaco of Argentina. Goat corrals are important for the survival of peridomestic populations of Triatoma infestans. This study evaluated the impact of modifying the traditional structure of goat corrals on T. infestans populations and goat productivity in the region of Los Llanos (La Rioja. Thirty-nine experimental corrals were constructed and 57 traditional corrals were used as controls. We evaluated the infestations of the control and experimental corrals for five years following construction of the structures. The results showed that the new structures did not prevent the colonization, although it enhanced the detection of infestation at low densities of T. infestans. No significant difference was found in T. infestans population abundance between control and experimental corrals, probably because of the different detectability in the two types of structures, especially among the small nymphs. Although goat productivity average was higher in experimental than in control corrals, no significant difference was found because of high variability. The new structures can be used as a complement to promote the development of rural communities. Acceptability and adoption of the new corrals by the owners was high, as the enclosures offered better protection for the goats, increased growth of kids and facilitated herd handling.

Theory of the l-state population of Rydberg states formed in ion-solid collisions

International Nuclear Information System (INIS)

Kemmler, J.; Burgdoerfer, J.; Reinhold, C.O.

1991-01-01

The experimentally observed high-l-state population of ions excited in ion-solid interactions differs sharply from l-state populations produced in ion-atom collisions. We have studied the population dynamics of electronic excitation and transport within the framework of a classical transport theory for O 2+ (2-MeV/u) ions traversing C foils. The resulting delayed-photon-emission intensities are found to be in very good agreement with experiment. Initial phase-space conditions have been obtained from both classical-trajectory Monte Carlo calculations and random initial distributions. We find evidence that the very-high-l-state populations produced in ion-solid collisions are the result of a diffusion to high-l states under the influence of multiple scattering in the bulk of the solid

Spatial genetic structure in continuous and fragmented populations of Pinus pinaster Aiton.

Science.gov (United States)

De-Lucas, A I; González-Martínez, S C; Vendramin, G G; Hidalgo, E; Heuertz, M

2009-11-01

Habitat fragmentation, i.e., the reduction of populations into small isolated remnants, is expected to increase spatial genetic structure (SGS) in plant populations through nonrandom mating, lower population densities and potential aggregation of reproductive individuals. We investigated the effects of population size reduction and genetic isolation on SGS in maritime pine (Pinus pinaster Aiton) using a combined experimental and simulation approach. Maritime pine is a wind-pollinated conifer which has a scattered distribution in the Iberian Peninsula as a result of forest fires and habitat fragmentation. Five highly polymorphic nuclear microsatellites were genotyped in a total of 394 individuals from two population pairs from the Iberian Peninsula, formed by one continuous and one fragmented population each. In agreement with predictions, SGS was significant and stronger in fragments (Sp = 0.020 and Sp = 0.026) than in continuous populations, where significant SGS was detected for one population only (Sp = 0.010). Simulations suggested that under fat-tailed dispersal, small population size is a stronger determinant of SGS than genetic isolation, while under normal dispersal, genetic isolation has a stronger effect. SGS was always stronger in real populations than in simulations, except if unrealistically narrow dispersal and/or high variance of reproductive success were modelled (even when accounting for potential overestimation of SGS in real populations as a result of short-distance sampling). This suggests that factors such as nonrandom mating or selection not considered in the simulations were additionally operating on SGS in Iberian maritime pine populations.

Life without water: cross-resistance of anhydrobiotic cell line to abiotic stresses

Science.gov (United States)

Gusev, Oleg

2016-07-01

Anhydrobiosis is an intriguing phenomenon of natural ability of some organisms to resist water loss. The larvae of Polypedilum vanderplanki, the sleeping chironomid is the largest and most complex anhydrobionts known to date. The larvae showed ability to survive variety of abiotic stresses, including outer space environment. Recently cell line (Pv11) derived from the embryonic mass of the chironomid was established. Initially sensitive to desiccation cells, are capable to "induced" anhydrobiosis, when the resistance to desiccation can be developed by pre-treatment of the cells with trehalose followed by quick desiccation. We have further conducted complex analysis of the whole genome transcription response of Pv11 cells to different abiotic stresses, including oxidative stress and irradiation. Comparative analysis showed that the gene set, responsible for formation of desiccation resistance (ARID regions in the genome) is also activated in response to other types of stresses and likely to contribute to general enhancing of the resistance of the cells to harsh environment. We have further demonstrated that the cells are able to protect recombinant proteins from harmful effect of desiccation

Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations.

Science.gov (United States)

Assaf, Zoe June; Tilk, Susanne; Park, Jane; Siegal, Mark L; Petrov, Dmitri A

2017-12-01

Mutations provide the raw material of evolution, and thus our ability to study evolution depends fundamentally on having precise measurements of mutational rates and patterns. We generate a data set for this purpose using (1) de novo mutations from mutation accumulation experiments and (2) extremely rare polymorphisms from natural populations. The first, mutation accumulation (MA) lines are the product of maintaining flies in tiny populations for many generations, therefore rendering natural selection ineffective and allowing new mutations to accrue in the genome. The second, rare genetic variation from natural populations allows the study of mutation because extremely rare polymorphisms are relatively unaffected by the filter of natural selection. We use both methods in Drosophila melanogaster , first generating our own novel data set of sequenced MA lines and performing a meta-analysis of all published MA mutations (∼2000 events) and then identifying a high quality set of ∼70,000 extremely rare (≤0.1%) polymorphisms that are fully validated with resequencing. We use these data sets to precisely measure mutational rates and patterns. Highlights of our results include: a high rate of multinucleotide mutation events at both short (∼5 bp) and long (∼1 kb) genomic distances, showing that mutation drives GC content lower in already GC-poor regions, and using our precise context-dependent mutation rates to predict long-term evolutionary patterns at synonymous sites. We also show that de novo mutations from independent MA experiments display similar patterns of single nucleotide mutation and well match the patterns of mutation found in natural populations. © 2017 Assaf et al.; Published by Cold Spring Harbor Laboratory Press.

Farm Population of the United States: 1972. Current Population Reports: Farm Population.

Science.gov (United States)

Bureau of the Census (DOC), Suitland, MD. Population Div.

Based on data derived from the Current Population Survey of the Bureau of Census, this statistical report presents demographic and labor force characteristics of the U.S. farm population and comparisons of the farm and nonfarm populations. Tabular data are presented as follows: (1) U.S. Population, Total and Farm: April 1960 to 1972; (2) Persons…

Farm Population of the United States: 1974. Current Population Reports, Farm Population.

Science.gov (United States)

Banks, Vera J.; And Others

Based on data derived primarily from the Current Population Survey of the Bureau of the Census, this statistical report presents demographic and labor force characteristics of the U.S. farm population and a comparison of selected characteristics of the farm and nonfarm population. Tabular data are presented as follows: (1) Population of the U.S.,…

Farm Population of the United States: 1971. Current Population Reports: Farm Population.

Science.gov (United States)

Bureau of the Census (DOC), Suitland, MD. Population Div.

Based on data derived from the Current Population Survey of the Bureau of the Census, this statistical report presents demographic and labor force characteristics of the U.S. farm population and comparisons of the farm and nonfarm populations. Tabular data are presented as follows: (1) U.S. Population, Total and Farm: April 1960 and 1971; (2)…

Pain perception in people with Down syndrome: a synthesis of clinical and experimental research

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McGuire, Brian E.; Defrin, Ruth

2015-01-01

People with an intellectual disability experience both acute and chronic pain with at least the same frequency as the general population. However, considerably less is known about the pain perception of people with Down syndrome. In this review paper, we evaluated the available clinical and experimental evidence. Some experimental studies of acute pain have indicated that pain threshold was higher than normal but only when using a reaction time method to measure pain sensitivity. However, when reaction time is not part of the calculation of the pain threshold, pain sensitivity in people with Down syndrome is in fact lower than normal (more sensitive to pain). Clinical studies of chronic pain have shown that people with an intellectual disability experience chronic pain and within that population, people with Down syndrome also experience chronic pain, but the precise prevalence of chronic pain in Down syndrome has yet to be established. Taken together, the literature suggests that people with Down syndrome experience pain, both acute and chronic, with at least the same frequency as the rest of the population. Furthermore, the evidence suggests that although acute pain expression appears to be delayed, once pain is registered, there appears to be a magnified pain response. We conclude by proposing an agenda for future research in this area. PMID:26283936

Epizootic pneumonia of bighorn sheep following experimental exposure to Mycoplasma ovipneumoniae.

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Thomas E Besser

Full Text Available Bronchopneumonia is a population limiting disease of bighorn sheep (Ovis canadensis. The cause of this disease has been a subject of debate. Leukotoxin expressing Mannheimia haemolytica and Bibersteinia trehalosi produce acute pneumonia after experimental challenge but are infrequently isolated from animals in natural outbreaks. Mycoplasma ovipneumoniae, epidemiologically implicated in naturally occurring outbreaks, has received little experimental evaluation as a primary agent of bighorn sheep pneumonia.In two experiments, bighorn sheep housed in multiple pens 7.6 to 12 m apart were exposed to M. ovipneumoniae by introduction of a single infected or challenged animal to a single pen. Respiratory disease was monitored by observation of clinical signs and confirmed by necropsy. Bacterial involvement in the pneumonic lungs was evaluated by conventional aerobic bacteriology and by culture-independent methods. In both experiments the challenge strain of M. ovipneumoniae was transmitted to all animals both within and between pens and all infected bighorn sheep developed bronchopneumonia. In six bighorn sheep in which the disease was allowed to run its course, three died with bronchopneumonia 34, 65, and 109 days after M. ovipneumoniae introduction. Diverse bacterial populations, predominantly including multiple obligate anaerobic species, were present in pneumonic lung tissues at necropsy.Exposure to a single M. ovipneumoniae infected animal resulted in transmission of infection to all bighorn sheep both within the pen and in adjacent pens, and all infected sheep developed bronchopneumonia. The epidemiologic, pathologic and microbiologic findings in these experimental animals resembled those seen in naturally occurring pneumonia outbreaks in free ranging bighorn sheep.

Epizootic pneumonia of bighorn sheep following experimental exposure to Mycoplasma ovipneumoniae.

Science.gov (United States)

Besser, Thomas E; Cassirer, E Frances; Potter, Kathleen A; Lahmers, Kevin; Oaks, J Lindsay; Shanthalingam, Sudarvili; Srikumaran, Subramaniam; Foreyt, William J

2014-01-01

Bronchopneumonia is a population limiting disease of bighorn sheep (Ovis canadensis). The cause of this disease has been a subject of debate. Leukotoxin expressing Mannheimia haemolytica and Bibersteinia trehalosi produce acute pneumonia after experimental challenge but are infrequently isolated from animals in natural outbreaks. Mycoplasma ovipneumoniae, epidemiologically implicated in naturally occurring outbreaks, has received little experimental evaluation as a primary agent of bighorn sheep pneumonia. In two experiments, bighorn sheep housed in multiple pens 7.6 to 12 m apart were exposed to M. ovipneumoniae by introduction of a single infected or challenged animal to a single pen. Respiratory disease was monitored by observation of clinical signs and confirmed by necropsy. Bacterial involvement in the pneumonic lungs was evaluated by conventional aerobic bacteriology and by culture-independent methods. In both experiments the challenge strain of M. ovipneumoniae was transmitted to all animals both within and between pens and all infected bighorn sheep developed bronchopneumonia. In six bighorn sheep in which the disease was allowed to run its course, three died with bronchopneumonia 34, 65, and 109 days after M. ovipneumoniae introduction. Diverse bacterial populations, predominantly including multiple obligate anaerobic species, were present in pneumonic lung tissues at necropsy. Exposure to a single M. ovipneumoniae infected animal resulted in transmission of infection to all bighorn sheep both within the pen and in adjacent pens, and all infected sheep developed bronchopneumonia. The epidemiologic, pathologic and microbiologic findings in these experimental animals resembled those seen in naturally occurring pneumonia outbreaks in free ranging bighorn sheep.

Teaching in Cyberspace: Online versus Traditional Instruction Using a Waiting-List Experimental Design

Science.gov (United States)

Poirier, Christopher R.; Feldman, Robert S.

2004-01-01

To test the effectiveness of an online introductory psychology course, we randomly assigned students to a large, traditional course or to an online course from a population of students who indicated that either course type was acceptable using a "waiting list" experimental design. Students in the online course performed better on exams and equally…

Reproduction in Cage Populations of a Polymorphism Regularly Observed in the Natural Populations of DROSOPHILA MELANOGASTER in France.

Science.gov (United States)

Fleuriet, A

1978-04-01

Polymorphism for both alleles of a gene ref(2)P, which is a usual trait of French natural populations of Drosophila melanogaster , can be reproduced in experimental conditions. ref(2)P is a gene for resistance to the hereditary, noncontagious Rhabdovirus sigma, responsible for CO(2) sensitivity in Drosophila melanogaster . The equilibrium frequencies observed in cages are the same as in the wild, whether sigma virus is present or not. The rapid rate of return to these equilibrium frequencies indicates that strong forces, which remain to be determined, are responsible for the maintenance of this polymorphism.

Experimental approaches for evaluating the invasion risk of biofuel crops

International Nuclear Information System (INIS)

Luke Flory, S; Sollenberger, Lynn E; Lorentz, Kimberly A; Gordon, Doria R

2012-01-01

There is growing concern that non-native plants cultivated for bioenergy production might escape and result in harmful invasions in natural areas. Literature-derived assessment tools used to evaluate invasion risk are beneficial for screening, but cannot be used to assess novel cultivars or genotypes. Experimental approaches are needed to help quantify invasion risk but protocols for such tools are lacking. We review current methods for evaluating invasion risk and make recommendations for incremental tests from small-scale experiments to widespread, controlled introductions. First, local experiments should be performed to identify conditions that are favorable for germination, survival, and growth of candidate biofuel crops. Subsequently, experimental introductions in semi-natural areas can be used to assess factors important for establishment and performance such as disturbance, founder population size, and timing of introduction across variable habitats. Finally, to fully characterize invasion risk, experimental introductions should be conducted across the expected geographic range of cultivation over multiple years. Any field-based testing should be accompanied by safeguards and monitoring for early detection of spread. Despite the costs of conducting experimental tests of invasion risk, empirical screening will greatly improve our ability to determine if the benefits of a proposed biofuel species outweigh the projected risks of invasions. (letter)

An in vivo system for directed experimental evolution of rabbit haemorrhagic disease virus.

Science.gov (United States)

Hall, Robyn N; Capucci, Lorenzo; Matthaei, Markus; Esposito, Simona; Kerr, Peter J; Frese, Michael; Strive, Tanja

2017-01-01

The calicivirus Rabbit haemorrhagic disease virus (RHDV) is widely used in Australia as a biocontrol agent to manage wild European rabbit (Oryctolagus cuniculus) populations. However, widespread herd immunity limits the effectiveness of the currently used strain, CAPM V-351. To overcome this, we developed an experimental platform for the selection and characterisation of novel RHDV strains. As RHDV does not replicate in cell culture, variant viruses were selected by serially passaging a highly virulent RHDV field isolate in immunologically naïve laboratory rabbits that were passively immunised 18-24 hours post-challenge with a neutralising monoclonal antibody. After seven passages, two amino acid substitutions in the P2 domain of the capsid protein became fixed within the virus population. Furthermore, a synonymous substitution within the coding sequence of the viral polymerase appeared and was also maintained in all subsequent passages. These findings demonstrate proof-of-concept that RHDV evolution can be experimentally manipulated to select for virus variants with altered phenotypes, in this case partial immune escape.

A mechanistic analysis of density dependence in algal population dynamics

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Adrian eBorlestean

2015-04-01

Full Text Available Population density regulation is a fundamental principle in ecology, but the specific process underlying functional expression of density dependence remains to be fully elucidated. One view contends that patterns of density dependence are largely fixed across a species irrespective of environmental conditions, whereas another is that the strength and expression of density dependence are fundamentally variable depending on the nature of exogenous or endogenous constraints acting on the population. We conducted a study investigating the expression of density dependence in Chlamydomonas spp. grown under a gradient from low to high nutrient density. We predicted that the relationship between per capita growth rate (pgr and population density would vary from concave up to concave down as nutrient density became less limiting and populations experienced weaker density regulation. Contrary to prediction, we found that the relationship between pgr and density became increasingly concave-up as nutrient levels increased. We also found that variation in pgr increased, and pgr levels reached higher maxima in nutrient-limited environments. Most likely, these results are attributable to population growth suppression in environments with high intraspecific competition due to limited nutrient resources. Our results suggest that density regulation is strongly variable depending on exogenous and endogenous processes acting on the population, implying that expression of density dependence depends extensively on local conditions. Additional experimental work should reveal the mechanisms influencing how the expression of density dependence varies across populations through space and time.

Spatial variability in macroinvertebrate assemblages along and among neighbouring equatorial glacier-fed streams

DEFF Research Database (Denmark)

Kuhn, J.; Andino, P.; Calvez, R.

2011-01-01

, the three sites were placed at comparable distances from the glacier and were grouped as ‘upper’ (50–200 m), ‘middle’ (1.5 km) and ‘lower’ sites (3.5–5.6 km). 3. In total, 2200 individuals (64% chironomids) were collected and 47 taxa (30 dipterans, 18 of these Chironomidae) identified. Density ranged from...

Chimera and phase-cluster states in populations of coupled chemical oscillators

Science.gov (United States)

Tinsley, Mark R.; Nkomo, Simbarashe; Showalter, Kenneth

2012-09-01

Populations of coupled oscillators may exhibit two coexisting subpopulations, one with synchronized oscillations and the other with unsynchronized oscillations, even though all of the oscillators are coupled to each other in an equivalent manner. This phenomenon, discovered about ten years ago in theoretical studies, was then further characterized and named the chimera state after the Greek mythological creature made up of different animals. The highly counterintuitive coexistence of coherent and incoherent oscillations in populations of identical oscillators, each with an equivalent coupling structure, inspired great interest and a flurry of theoretical activity. Here we report on experimental studies of chimera states and their relation to other synchronization states in populations of coupled chemical oscillators. Our experiments with coupled Belousov-Zhabotinsky oscillators and corresponding simulations reveal chimera behaviour that differs significantly from the behaviour found in theoretical studies of phase-oscillator models.

Population specific fitness response of Drosophila subobscura to lead pollution.

Science.gov (United States)

Kenig, Bojan; Stamenković-Radak, Marina; Andelković, Marko

2013-04-01

Differences in heavy metal tolerance among separate populations of the same species have often been interpreted as local adaptation. Persistence of differences after removing the stressor indicates that mechanisms responsible for the increased tolerance were genetically determined. Drosophila subobscura Collin (Diptera: Drosophilidae) populations were sampled from two localities with different history of heavy metal pollution, and reared for eight generations in the laboratory on a standard medium and on media with different concentrations of lead (Pb). To determine whether flies from different natural populations exposed to the Pb-contaminated media in the laboratory show population specific variability in fitness components over generations, experimental groups with different concentrations of lead were assayed in three generations (F2 , F5 , and F8 ) for fecundity, developmental time, and egg-to-adult viability. On the contaminated medium, fecundity was reduced in later generations and viability was increased, irrespective of the environmental origin of populations. For both populations, developmental time showed a tendency of slowing down on media with lead. Faster development was observed in later generations. Preadaptation to contamination, meaning higher fecundity, higher viability, and faster egg to adult development in all studied generations, was found in D. subobscura originating from the locality with a higher level of heavy metal pollution. © 2012 The Authors Insect Science © 2012 Institute of Zoology, Chinese Academy of Sciences.

Response of selected microorganisms to experimental planetary environments

Science.gov (United States)

Foster, T. L.

1981-01-01

Anaerobic and aerobic sporeformers and non-sporeformers were cultivated anaerobically in nutrient media under various pressures (up to 1800 psi) of pure H2, CH4, NH3, and H2S. Viability assays were performed periodically to determine growth, survival, or spore survival. Hydrogen up to 1800 psi demonstrated little or no suppression of growth with the possible exception of Bacillus coagulans at 1800 psi. The obligate anaerobes grew very well. Under CH4 the obligate anaerobes again exhibited the most prolific growth, whereas the facultative anaerobes grew well except under higher pressures. Ammonia at low pressure was extremely toxic to all test organisms. At 100 psi all populations were killed within 24 hours except Staphylococcus aureus which survived for 72 hours and the Bacillus spp. which produced a surviving population of approximately 10,000 spores/ml. All populations in H2S were killed within 24 to 48 hours except Proteus mirabilis which decreased to 100 cells/ml and the Bacillus spp. Spore survival studies of two months duration demonstrated that B. coagulans and B. pumilus survived under all experimental conditions. Clostridium novyi type B and C. sporogenes were killed rapidly in NH3 and H2S and demonstrated no sporulation.

Inquiry on the radiation exposure of the Swiss population by X-ray diagnosis

International Nuclear Information System (INIS)

Poretti, G.G.; Bern Univ.; Jonesco-Farca, F.; Lanz, W.

1976-01-01

The genetic load on a population is usually expressed in terms of the so-called 'Genetically Significant Dose' (GSD), i.e. the dose which, averaged over the total population, produces the same results as the varying amounts of radiation received in reality by the individuals making up the population. It may be calculated taking into account the following parameters: 1) total number of male and female persons in the population per age group, including the foetuses, 2) average expectation of children per person, 3) number of persons having received a certain type of X-ray examination, and 4) experimental gonadal dose for this examination (for men, women and foetuses - not to be confused with the GSD). The GSD of the Swiss population for the year 1971 was calculated per age group on the basis of physicians' data on some 60,000 patients. The gonadal dose was determined experimentally in various hospitals by means of TLD dosimeters, sensitive high-pressure ionization chambers and normal chambers. The computer programme to calculate the GSD (PL/1 language) is very time-consuming, but its structure allows a new selective investigation to be made later on by merely changing the input. The results show that in Switzerland as in other countries there is a 3-4% increase per year in X-ray examinations for diagnostic purposes. The GSD for 1971 is 42-43 mrad per person in Switzerland as compared to 22 mrad for 1957. The GSD percentage is about 57% for men, about 35% for women and about 8% for foetuses. The number of X-ray examinations is almost equal for general practitioners (53.8%) and hospitals (46.2%). (orig.) [de

Testing human sperm chemotaxis: how to detect biased motion in population assays.

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Leah Armon

Full Text Available Biased motion of motile cells in a concentration gradient of a chemoattractant is frequently studied on the population level. This approach has been particularly employed in human sperm chemotactic assays, where the fraction of responsive cells is low and detection of biased motion depends on subtle differences. In these assays, statistical measures such as population odds ratios of swimming directions can be employed to infer chemotactic performance. Here, we report on an improved method to assess statistical significance of experimentally determined odds ratios and discuss the strong impact of data correlations that arise from the directional persistence of sperm swimming.

Population control II: The population establishment today.

Science.gov (United States)

Hartmann, B

1997-01-01

Although population assistance represents a relatively small share of official development assistance, it influences many other aspects of development planning. The organizations that comprise the population establishment have a common purpose--the reduction of population growth in the Third World--but they are not homogeneous and sometimes have conflicting goals and strategies. National governments, multilateral agencies, nongovernmental organizations, foundations, academic centers, and pressure groups all contribute to creating and sustaining what has become a virtual population control industry. Through scholarships, travel grants, awards, and favorable publicity, Third World elites have been encouraged to join the population establishment. The World Bank, the U.S. Agency for International Development, and the U.N. Fund for Population Activities have pursued explicit strategies for pressuring Third World governments to design and implement population policies, most recently in Africa.

Experimental validation of calculated atomic charges in ionic liquids

Science.gov (United States)

Fogarty, Richard M.; Matthews, Richard P.; Ashworth, Claire R.; Brandt-Talbot, Agnieszka; Palgrave, Robert G.; Bourne, Richard A.; Vander Hoogerstraete, Tom; Hunt, Patricia A.; Lovelock, Kevin R. J.

2018-05-01

A combination of X-ray photoelectron spectroscopy and near edge X-ray absorption fine structure spectroscopy has been used to provide an experimental measure of nitrogen atomic charges in nine ionic liquids (ILs). These experimental results are used to validate charges calculated with three computational methods: charges from electrostatic potentials using a grid-based method (ChelpG), natural bond orbital population analysis, and the atoms in molecules approach. By combining these results with those from a previous study on sulfur, we find that ChelpG charges provide the best description of the charge distribution in ILs. However, we find that ChelpG charges can lead to significant conformational dependence and therefore advise that small differences in ChelpG charges (<0.3 e) should be interpreted with care. We use these validated charges to provide physical insight into nitrogen atomic charges for the ILs probed.

Physical Education as a means of health and working efficiency improvement of population

Directory of Open Access Journals (Sweden)

Khasanova Rezeda R.

2016-01-01

Full Text Available In this article historical and contemporary influence of physical education (PE and sport instances are shown in economic indices. The notion “health”, as well as the influence of physical education and sport at its level, is given. Health-detrimental behavior (malnutrition, physical inactivity, alcohol abuse and smoking can be the cause of chronic diseases and have a significant influence on health of citizens. Experimental data, which approve that bad working conditions and health-detrimental behavior can discourage productivity and extend the periods of temporary incapacity for work, are marked. In addition, there is an access to the majority of the adult population, which provides a perfect opportunity for healthy lifestyle campaign. Consequently, the campaigns aimed at health improvement of the employable population at their working places, have potentials for a wide population segment engagement, which cannot be accessible for other medical campaigns. Experimental data on increase in labour productivity and economic effectiveness improvement by means of physical education are given; the latter was applied to people at their work during the soviet period, when the large-scale research was made. The necessity of physical education integration in the productive process is proved, which will finally have a positive impact on the whole economy.

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation.

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Philip Gemmell

Full Text Available Variability is observed at all levels of cardiac electrophysiology. Yet, the underlying causes and importance of this variability are generally unknown, and difficult to investigate with current experimental techniques. The aim of the present study was to generate populations of computational ventricular action potential models that reproduce experimentally observed intercellular variability of repolarisation (represented by action potential duration and to identify its potential causes. A systematic exploration of the effects of simultaneously varying the magnitude of six transmembrane current conductances (transient outward, rapid and slow delayed rectifier K(+, inward rectifying K(+, L-type Ca(2+, and Na(+/K(+ pump currents in two rabbit-specific ventricular action potential models (Shannon et al. and Mahajan et al. at multiple cycle lengths (400, 600, 1,000 ms was performed. This was accomplished with distributed computing software specialised for multi-dimensional parameter sweeps and grid execution. An initial population of 15,625 parameter sets was generated for both models at each cycle length. Action potential durations of these populations were compared to experimentally derived ranges for rabbit ventricular myocytes. 1,352 parameter sets for the Shannon model and 779 parameter sets for the Mahajan model yielded action potential duration within the experimental range, demonstrating that a wide array of ionic conductance values can be used to simulate a physiological rabbit ventricular action potential. Furthermore, by using clutter-based dimension reordering, a technique that allows visualisation of multi-dimensional spaces in two dimensions, the interaction of current conductances and their relative importance to the ventricular action potential at different cycle lengths were revealed. Overall, this work represents an important step towards a better understanding of the role that variability in current conductances may play in

Population of computational rabbit-specific ventricular action potential models for investigating sources of variability in cellular repolarisation.

Science.gov (United States)

Gemmell, Philip; Burrage, Kevin; Rodriguez, Blanca; Quinn, T Alexander

2014-01-01

Variability is observed at all levels of cardiac electrophysiology. Yet, the underlying causes and importance of this variability are generally unknown, and difficult to investigate with current experimental techniques. The aim of the present study was to generate populations of computational ventricular action potential models that reproduce experimentally observed intercellular variability of repolarisation (represented by action potential duration) and to identify its potential causes. A systematic exploration of the effects of simultaneously varying the magnitude of six transmembrane current conductances (transient outward, rapid and slow delayed rectifier K(+), inward rectifying K(+), L-type Ca(2+), and Na(+)/K(+) pump currents) in two rabbit-specific ventricular action potential models (Shannon et al. and Mahajan et al.) at multiple cycle lengths (400, 600, 1,000 ms) was performed. This was accomplished with distributed computing software specialised for multi-dimensional parameter sweeps and grid execution. An initial population of 15,625 parameter sets was generated for both models at each cycle length. Action potential durations of these populations were compared to experimentally derived ranges for rabbit ventricular myocytes. 1,352 parameter sets for the Shannon model and 779 parameter sets for the Mahajan model yielded action potential duration within the experimental range, demonstrating that a wide array of ionic conductance values can be used to simulate a physiological rabbit ventricular action potential. Furthermore, by using clutter-based dimension reordering, a technique that allows visualisation of multi-dimensional spaces in two dimensions, the interaction of current conductances and their relative importance to the ventricular action potential at different cycle lengths were revealed. Overall, this work represents an important step towards a better understanding of the role that variability in current conductances may play in experimentally

Feedback controlled dephasing and population relaxation in a two-level system

International Nuclear Information System (INIS)

Wang Jin

2009-01-01

This Letter presents the maximum achievable stability and purity that can be obtained in a two-level system with both dephasing and population relaxation processes by using homodyne-mediated feedback control. An analytic formula giving the optimal amplitudes of the driving and feedback for the steady-state is also presented. Experimental examples are used to show the importance of controlling the dephasing process.

Tiller size/population density compensation in grazed Coastcross bermudagrass swards

Directory of Open Access Journals (Sweden)

Sbrissia André Fischer

2001-01-01

Full Text Available Several compensatory mechanisms in pastures do not allow optimisation of responses from the processes of herbage production and utilisation. Compensation due to tiller size/density relationships is one of these mechanisms. This experiment evaluated this process for Coastcross bermudagrass and compared the responses to those reported for temperate forages. Treatments were "steady state" sward surface heights of 5, 10, 15, and 20 cm that were maintained from August, 1998, through July, 1999 by sheep grazing. The experimental design was a randomised complete block, replicated four times. Pasture responses were evaluated on four separate dates (15/12/1998, 25/01/1999, 07/04/1999 and 04/07/1999 with respect to: tiller population density, tiller weight, leaf mass and leaf area per tiller and herbage mass (biomass. Tiller volume, leaf area index (LAI, tiller leaf:stem ratio and tiller leaf area:volume ratio (R were calculated. Simple regression analyses between tiller population density and tiller weight were also performed. Coastcross swards showed a tiller size/density compensation mechanism where high tiller population densities were associated with small tillers and vice-versa; except on the last evaluation. However, regression analysis revealed linear coefficients of -3.83 to -2.05, which are lower than the theoretical expectation of -3/2. The lower R values observed, when compared to those reported for perennial ryegrass, suggest that Coastcross swards optimised their LAI via clonal integration among tillers in contrast with tillers of cool-season grasses that respond more as individuals. However, this hypothesis has yet to be experimentally verified.

Environmental change disrupts communication and sexual selection in a stickleback population.

Science.gov (United States)

Candolin, Ulrika; Tukiainen, Iina; Bertell, Elina

2016-04-01

Environmental change that disrupts communication during mate choice and alters sexual selection could influence population dynamics. Yet little is known about such long-term effects. We investigated experimentally the consequences that disrupted visual communication during mate choice has for the quantity and viability of offspring produced in a threespine stickleback population (Gasterosteus aculeatus). We further related the results to long-term monitoring of population dynamics in the field to determine if changes are apparent under natural conditions. The results show that impaired visual communication because of algal blooms reduces reliability of male visual signals as indicators of offspring survival during their first weeks of life. This relaxes sexual selection but has no effect on the number of offspring hatching, as most males have a high hatching success in turbid water. Despite eutrophication and high turbidity levels that interfere with communication during mate choice, the population has grown during recent decades. Large numbers of offspring hatching, combined with high variation in juvenile fitness, has probably shifted selection to later life history stages and maintained a viable population. Together with reduced cost of sexual selection and ongoing ecosystem changes caused by human activities, this could have promoted population growth. These results point to the complexity of ecosystems and the necessity to consider all influencing factors when attempting to understand impacts of human activities on populations.

Population dynamics of Ascaridia galli following single infection in young chickens

DEFF Research Database (Denmark)

Ferdushy, Tania; Luna Olivares, Luz Adilia; Nejsum, Peter

2013-01-01

SUMMARY The population dynamics of Ascaridia galli was studied in 70 ISA Brown layer pullets, 42 of them were each experimentally infected with 500 embryonated A. galli eggs and 28 chickens were kept as uninfected controls. Six chickens from the infected group and 4 from the control group were...

Population of Nuclei Via 7Li-Induced Binary Reactions

International Nuclear Information System (INIS)

Clark, Rodney M.; Phair, Larry W.; Descovich, M.; Cromaz, Mario; Deleplanque, M.A.; Fall on, Paul; Lee, I-Yang; Macchiavelli, A.O.; McMahan, Margaret A.; Moretto, Luciano G.; Rodriguez-Vieitez, E.; Sinha, Shrabani; Stephens, Frank S.; Ward, David; Wiedeking, Mathis

2005-01-01

The authors have investigated the population of nuclei formed in binary reactions involving 7 Li beams on targets of 160 Gd and 184 W. The 7 Li + 184 W data were taken in the first experiment using the LIBERACE Ge-array in combination with the STARS Si ΔE-E telescope system at the 88-Inch Cyclotron of the Lawrence Berkeley National Laboratory. By using the Wilczynski binary transfer model, in combination with a standard evaporation model, they are able to reproduce the experimental results. This is a useful method for predicting the population of neutron-rich heavy nuclei formed in binary reactions involving beams of weakly bound nuclei formed in binary reactions involving beams of weakly bound nuclei and will be of use in future spectroscopic studies

Experimental models of liver fibrosis.

Science.gov (United States)

Yanguas, Sara Crespo; Cogliati, Bruno; Willebrords, Joost; Maes, Michaël; Colle, Isabelle; van den Bossche, Bert; de Oliveira, Claudia Pinto Marques Souza; Andraus, Wellington; Alves, Venâncio Avancini Ferreira; Leclercq, Isabelle; Vinken, Mathieu

2016-05-01

Hepatic fibrosis is a wound healing response to insults and as such affects the entire world population. In industrialized countries, the main causes of liver fibrosis include alcohol abuse, chronic hepatitis virus infection and non-alcoholic steatohepatitis. A central event in liver fibrosis is the activation of hepatic stellate cells, which is triggered by a plethora of signaling pathways. Liver fibrosis can progress into more severe stages, known as cirrhosis, when liver acini are substituted by nodules, and further to hepatocellular carcinoma. Considerable efforts are currently devoted to liver fibrosis research, not only with the goal of further elucidating the molecular mechanisms that drive this disease, but equally in view of establishing effective diagnostic and therapeutic strategies. The present paper provides a state-of-the-art overview of in vivo and in vitro models used in the field of experimental liver fibrosis research.

Timing intervals using population synchrony and spike timing dependent plasticity

Directory of Open Access Journals (Sweden)

Wei Xu

2016-12-01

Full Text Available We present a computational model by which ensembles of regularly spiking neurons can encode different time intervals through synchronous firing. We show that a neuron responding to a large population of convergent inputs has the potential to learn to produce an appropriately-timed output via spike-time dependent plasticity. We explain why temporal variability of this population synchrony increases with increasing time intervals. We also show that the scalar property of timing and its violation at short intervals can be explained by the spike-wise accumulation of jitter in the inter-spike intervals of timing neurons. We explore how the challenge of encoding longer time intervals can be overcome and conclude that this may involve a switch to a different population of neurons with lower firing rate, with the added effect of producing an earlier bias in response. Experimental data on human timing performance show features in agreement with the model’s output.

Trail networks formed by populations of immune cells

International Nuclear Information System (INIS)

Yang, Taeseok Daniel; Kwon, Tae Goo; Park, Jin-sung; Lee, Kyoung J

2014-01-01

Populations of biological cells that communicate with each other can organize themselves to generate large-scale patterns. Examples can be found in diverse systems, ranging from developing embryos, cardiac tissues, chemotaxing ameba and swirling bacteria. The similarity, often shared by the patterns, suggests the existence of some general governing principle. On the other hand, rich diversity and system-specific properties are exhibited, depending on the type of involved cells and the nature of their interactions. The study on the similarity and the diversity constitutes a rapidly growing field of research. Here, we introduce a new class of self-organized patterns of cell populations that we term as ‘cellular trail networks’. They were observed with populations of rat microglia, the immune cells of the brain and the experimental evidence suggested that haptotaxis is the key element responsible for them. The essential features of the observed patterns are well captured by the mathematical model cells that actively crawl and interact with each other through a decomposing but non-diffusing chemical attractant laid down by the cells. Our finding suggests an unusual mechanism of socially cooperative long-range signaling for the crawling immune cells. (paper)

Aterosclerose experimental em coelhos Experimental atherosclerosis in rabbits

Directory of Open Access Journals (Sweden)

Waleska C. Dornas

2010-08-01

Full Text Available Numerosas pesquisas têm sido realizadas utilizando modelos experimentais para estudar o desenvolvimento da aterosclerose com dieta induzindo hiperlipidemia. Devido ao fato de que coelhos são muito sensíveis a dietas ricas em colesterol e acumulam grandes quantidades no plasma, a utilização destes animais como modelo experimental para avaliar o desenvolvimento de aterosclerose é de grande relevância, trazendo informação sobre fatores que contribuem para progressão e regressão aplicadas a situações humanas. Sendo assim, nessa revisão a função aterogênica do colesterol é mostrada em trabalhos que incluem o coelho como modelo experimental, uma vez que este animal tornou-se o mais popular modelo experimental de aterosclerose.Many researches have been conducted in experimental models in order to study the development of atherosclerosis from hyperlipidemia-inducing diets. Since rabbits are very sensitive to cholesterol-rich diets and accumulate large amounts of cholesterol in their plasma, their use as experimental models to evaluate the development of atherosclerosis is highly relevant and brings information on factors that contribute to the progression and regression of this condition that can be applied to humans. As such, this review includes studies on the atherogenic function of cholesterol based on rabbits as the experimental model, since they have become the most largely used experimental model of atherosclerosis.

An evaluation of the exposure to 210Pb-210Po in italian population

International Nuclear Information System (INIS)

Clemente, G.F.; Santori, G.; Renzetti, A.

1979-01-01

Following an introduction on the behaviour in the environment and in man of 210 Pb- 210 Po, experimental data are reported on 210 Pb- 210 Po exposure of the italian population. The analytical methods used to measure 210 Pb- 210 Po activity in the many biological and environmental samples analyzed are also reported. The data collected refer to the intake, excretion, internal burden and metabolism both in a group of subjects representative of the general population and in other critical groups exposed to high internal contamination of 210 Pb- 210 Po, as the radioactive spa wopkes and the miners. The absorbed dose due to 210 Pb- 210 Po has also been evaluated, on the basis of data referring to the various population groups

Limnologic-geologic excursion in the territory of the lower Erft River

Energy Technology Data Exchange (ETDEWEB)

Friedrich, G.; Thome, K.N.

1976-01-01

The geography and hydrology of the area of the excursion are described. There is much damage due to brown coal strip mining operations. Ground water was drained through a canal leading to the Erft River. The water in nearby springs is rich in Fe which repels plant life. The canal contains only a few blue algae (Oscillatoria splendida) and filamentous green algae (Ulothrix tenerrima) which tolerate high Fe concentrations. The Erft shore plant population includes Sparganium erectum, Potamogeton natans, P. pectinatus and Ranunculus fluitans. On flowering plants and stones, diatoms, various green algae (Cladophora glomerata, Stigeoclonium tenue, Oedogonium capillare) and the tropical red alga Compsopogon hookeri were found. The macrozoobenthos is composed mainly of snails (Bithynia tenaculata, Lumnaea ovata, Physa fontinalis, P. acuta and worms of North American origin (Dugesia tifrina, Dendrocoelum lacteum and Planaria lugubris). The Isopoda included Asellus coxalis and A. aquaticus. Leeches (Herpobdella octoculata) and insect larvae (Chironomids, Limnephilids) were also found.

Effect of plant population and N fertilizer on the growth and yield of ...

African Journals Online (AJOL)

Responses of bambara groundnut (Vigna subterranea (L.) Verdc) to 3 levels of fertilizer N (0, 50, and 100 kg N/ha) and seven plant populations (55555, 63492, 74074, 88888, 111111, 148148 and 222222 plants/ha) were studied under field conditions in Nsukka, Nigeria. The experimental design was a randomized ...

Cortical processes of speech illusions in the general population.

Science.gov (United States)

Schepers, E; Bodar, L; van Os, J; Lousberg, R

2016-10-18

There is evidence that experimentally elicited auditory illusions in the general population index risk for psychotic symptoms. As little is known about underlying cortical mechanisms of auditory illusions, an experiment was conducted to analyze processing of auditory illusions in a general population sample. In a follow-up design with two measurement moments (baseline and 6 months), participants (n = 83) underwent the White Noise task under simultaneous recording with a 14-lead EEG. An auditory illusion was defined as hearing any speech in a sound fragment containing white noise. A total number of 256 speech illusions (SI) were observed over the two measurements, with a high degree of stability of SI over time. There were 7 main effects of speech illusion on the EEG alpha band-the most significant indicating a decrease in activity at T3 (t = -4.05). Other EEG frequency bands (slow beta, fast beta, gamma, delta, theta) showed no significant associations with SI. SIs are characterized by reduced alpha activity in non-clinical populations. Given the association of SIs with psychosis, follow-up research is required to examine the possibility of reduced alpha activity mediating SIs in high risk and symptomatic populations.

The vulnerability of silver fir populations to damage from late frosts

Directory of Open Access Journals (Sweden)

Klisz Marcin

2016-03-01

Full Text Available The aim of the study was to determine the vulnerability of selected silver fir populations to damage from late frost in the climatic conditions of south-eastern Poland. To determine the vulnerability of apical and lateral shoots to damage caused by late frosts, we observed four test plots in 2009 and 2014, each containing progenies of selected seed stands. Our statistical analyses were based on a model incorporating the following variables: site, year, type of frost damage, population as well as the possible interaction between these variables. Significant differences between the populations were found in terms of their sensitivity to damage from low temperature occurring during the growth period. Furthermore, we indirectly demonstrated differences in the severity of late frost on the experimental plots, as well as the intensity and variability of late frost shoot damage. Based on these results, we divided the studied populations into two groups of low (EF, KRA1 and NAR and high (LES2 and BAL2 sensitivity to late frost damage.

Experimental Engineering: Articulating and Valuing Design Experimentation

DEFF Research Database (Denmark)

Vallgårda, Anna; Grönvall, Erik; Fritsch, Jonas

2017-01-01

In this paper we propose Experimental Engineering as a way to articulate open- ended technological experiments as a legitimate design research practice. Experimental Engineering introduces a move away from an outcome or result driven design process towards an interest in existing technologies and...

Polymorphism for pKALILO based senescence in Hawaiian populations of Neurospora intermedia and Neurospora tetrasperma.

NARCIS (Netherlands)

Maas, M.F.P.M.; Mourik, van A.; Hoekstra, R.F.; Debets, A.J.M.

2005-01-01

The natural population of Neurospora intermedia from Hawaii is polymorphic for the presence of the linear mitochondrial plasmid pKALILO that is associated with an infectious senescence syndrome. Although inter-specific horizontal transmission is experimentally possible, thus far pKALILO associated

Climate warming drives local extinction: Evidence from observation and experimentation.

Science.gov (United States)

Panetta, Anne Marie; Stanton, Maureen L; Harte, John

2018-02-01

Despite increasing concern about elevated extinction risk as global temperatures rise, it is difficult to confirm causal links between climate change and extinction. By coupling 25 years of in situ climate manipulation with experimental seed introductions and both historical and current plant surveys, we identify causal, mechanistic links between climate change and the local extinction of a widespread mountain plant ( Androsace septentrionalis ). Climate warming causes precipitous declines in population size by reducing fecundity and survival across multiple life stages. Climate warming also purges belowground seed banks, limiting the potential for the future recovery of at-risk populations under ameliorated conditions. Bolstered by previous reports of plant community shifts in this experiment and in other habitats, our findings not only support the hypothesis that climate change can drive local extinction but also foreshadow potentially widespread species losses in subalpine meadows as climate warming continues.

Experimental evidence that density dependence strongly influences plant invasions through fragmented landscapes.

Science.gov (United States)

Williams, Jennifer L; Levine, Jonathan M

2018-04-01

Populations of range expanding species encounter patches of both favorable and unfavorable habitat as they spread across landscapes. Theory shows that increasing patchiness slows the spread of populations modeled with continuously varying population density when dispersal is not influence by the environment or individual behavior. However, as is found in uniformly favorable landscapes, spread remains driven by fecundity and dispersal from low density individuals at the invasion front. In contrast, when modeled populations are composed of discrete individuals, patchiness causes populations to build up to high density before dispersing past unsuitable habitat, introducing an important influence of density dependence on spread velocity. To test the hypothesized interaction between habitat patchiness and density dependence, we simultaneously manipulated these factors in a greenhouse system of annual plants spreading through replicated experimental landscapes. We found that increasing the size of gaps and amplifying the strength of density dependence both slowed spread velocity, but contrary to predictions, the effect of amplified density dependence was similar across all landscape types. Our results demonstrate that the discrete nature of individuals in spreading populations has a strong influence on how both landscape patchiness and density dependence influence spread through demographic and dispersal stochasticity. Both finiteness and landscape structure should be critical components to theoretical predictions of future spread for range expanding native species or invasive species colonizing new habitat. © 2018 by the Ecological Society of America.

Experimental exposure to cadmium affects metallothionein-like protein levels but not survival and growth in wolf spiders from polluted and reference populations

Energy Technology Data Exchange (ETDEWEB)

Eraly, Debbie, E-mail: debbie.eraly@ugent.b [Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent (Belgium); Hendrickx, Frederik, E-mail: frederik.hendrickx@naturalsciences.b [Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent (Belgium); Royal Belgian Institute of Natural Sciences, Department of Entomology, Vautierstraat 29, 1000 Brussels (Belgium); Bervoets, Lieven, E-mail: lieven.bervoets@ua.ac.b [Ecophysiology, Biochemistry and Toxicology Group, Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Lens, Luc, E-mail: luc.lens@ugent.b [Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent (Belgium)

2010-06-15

Both local adaptation and acclimation in tolerance mechanisms may allow populations to persist under metal pollution. However, both mechanisms are presumed to incur (energetic) costs and to trade-off with other life-history traits. To test this hypothesis, we exposed Pardosa saltans (Lycosidae) spiderlings originating from metal-polluted and unpolluted sites to a controlled cadmium (Cd) treatment, and compared contents of metal-binding metallothionein-like proteins (MTLPs), internal metal concentrations, and individual survival and growth rates with a reference treatment. While increased MTLP concentrations in offspring originating from both polluted and unpolluted populations upon exposure indicates a plastic tolerance mechanism, survival and growth rates remain largely unaffected, independent of the population of origin. However, MTLP and Cd concentrations were not significantly correlated. We suggest that MTLP production may be an important mechanism enabling P. saltans populations to persist in ecosystems polluted with heavy metals above a certain level. - Spiders from metal-polluted and unpolluted populations show a similar increase in MTLP production when exposed to Cd, with unaffected growth and survival.

Experimental exposure to cadmium affects metallothionein-like protein levels but not survival and growth in wolf spiders from polluted and reference populations

International Nuclear Information System (INIS)

Eraly, Debbie; Hendrickx, Frederik; Bervoets, Lieven; Lens, Luc

2010-01-01

Both local adaptation and acclimation in tolerance mechanisms may allow populations to persist under metal pollution. However, both mechanisms are presumed to incur (energetic) costs and to trade-off with other life-history traits. To test this hypothesis, we exposed Pardosa saltans (Lycosidae) spiderlings originating from metal-polluted and unpolluted sites to a controlled cadmium (Cd) treatment, and compared contents of metal-binding metallothionein-like proteins (MTLPs), internal metal concentrations, and individual survival and growth rates with a reference treatment. While increased MTLP concentrations in offspring originating from both polluted and unpolluted populations upon exposure indicates a plastic tolerance mechanism, survival and growth rates remain largely unaffected, independent of the population of origin. However, MTLP and Cd concentrations were not significantly correlated. We suggest that MTLP production may be an important mechanism enabling P. saltans populations to persist in ecosystems polluted with heavy metals above a certain level. - Spiders from metal-polluted and unpolluted populations show a similar increase in MTLP production when exposed to Cd, with unaffected growth and survival.

Experimental thermodynamics experimental thermodynamics of non-reacting fluids

CERN Document Server

Neindre, B Le

2013-01-01

Experimental Thermodynamics, Volume II: Experimental Thermodynamics of Non-reacting Fluids focuses on experimental methods and procedures in the study of thermophysical properties of fluids. The selection first offers information on methods used in measuring thermodynamic properties and tests, including physical quantities and symbols for physical quantities, thermodynamic definitions, and definition of activities and related quantities. The text also describes reference materials for thermometric fixed points, temperature measurement under pressures, and pressure measurements. The publicatio

Experimental study on display-control stereotype and development of human factors guidelines

International Nuclear Information System (INIS)

Lee, Jung Woon; Lee, Yong Hee; Oh, In Seok; Lee, Hyun Chul; Cha, Woo Chang

2003-01-01

It is very important to develop the design guidelines which can be applicable for Korean operators for the purpose of designing the KSNP more safely. The objective of this project is to provide the standards, guidelines and bases applicable for HF-010 through the within-subject experiment for obtaining Korean operators' population stereotype for direction-of-movement of controls associated with displays on the control panels. Through the survey of researches on display compatibility and the classification of types of displays and controls in the main control room of Uljin units 3 and 4, methods for an experiment on the stereotype were established. Experimental interface prototypes for a total of 108 combinations of display and control types were implemented. Experimental data collection and analysis system was built in association with the interface prototypes. The experiment was performed with participation of 250 students as subjects. About 20 guideline items were developed based on the results obtained from our analysis of experimental data

Experimental study on display-control stereotype and development of human factors guidelines

Energy Technology Data Exchange (ETDEWEB)

Lee, Jung Woon; Lee, Yong Hee; Oh, In Seok; Lee, Hyun Chul [KAERI, Taejon (Korea, Republic of); Cha, Woo Chang [Kumoh National Univ. of Technolgy, Gumi (Korea, Republic of)

2003-01-01

It is very important to develop the design guidelines which can be applicable for Korean operators for the purpose of designing the KSNP more safely. The objective of this project is to provide the standards, guidelines and bases applicable for HF-010 through the within-subject experiment for obtaining Korean operators' population stereotype for direction-of-movement of controls associated with displays on the control panels. Through the survey of researches on display compatibility and the classification of types of displays and controls in the main control room of Uljin units 3 and 4, methods for an experiment on the stereotype were established. Experimental interface prototypes for a total of 108 combinations of display and control types were implemented. Experimental data collection and analysis system was built in association with the interface prototypes. The experiment was performed with participation of 250 students as subjects. About 20 guideline items were developed based on the results obtained from our analysis of experimental data.

Eulerian Multiphase Population Balance Model of Atomizing, Swirling Flows

Directory of Open Access Journals (Sweden)

Narayana P. Rayapati

2011-06-01

Full Text Available An Eulerian/Eulerian multiphase flow model coupled with a population balance model is used as the basis for numerical simulation of atomization in swirling flows. The objective of this exercise is to develop a methodology capable of predicting the local point-wise drop size distribution in a spray, such as would be measured by the Phase Doppler Particle Analyzer (PDA. Model predictions are compared to experimental measurements of particle size distributions in an air-blast atomizer spray to demonstrate good qualitative and quantitative agreement. It is observed that the dependence of velocity on drop size inherent in a multiphase description of the drop cloud appears necessary to capture some features of the experimental data. Using this model, we demonstrate the relative contributions of secondary atomization and transport to the variation observed in the downstream spray drop size distribution.

Farm Population of the United States: 1976. Current Population Reports: Farm Population.

Science.gov (United States)

Banks, Vera J.; And Others

Prepared cooperatively by the Bureau of the Census and the Economic Research Service of the U.S. DeparLment of Agriculture, this document presents narrative and tabular data on: demographic and social characteristics of the farm population; economic characteristics of the farm population; revision of farm population processing procedures; and…

THE EFFECTS OF POPULATION-SIZE AND PLANT-DENSITY ON OUTCROSSING RATES IN LOCALLY ENDANGERED SALVIA-PRATENSIS

NARCIS (Netherlands)

VANTREUREN, R; BIJLSMA, R; OUBORG, NJ; VANDELDEN, W

Multilocus outcrossing rates were estimated in natural and experimental populations of Salvia pratensis, an entomophilous, gynodioecious, protandrous perennial. Male steriles were used to check the estimation procedure of outcrossing rates in hermaphrodites. Estimates of outcrossing rates in

Analysis of experimental biosensor/FIA lactose measurements

Directory of Open Access Journals (Sweden)

Ferreira L.S.

2003-01-01

Full Text Available Whey is an abundant effluent in the production of cheese and casein. The biotechnological utilization of this economically important and nutritive source is limited mainly because of the presence of high percentages of lactose. This disaccharide has poor solubility, which can cause crystallization and insufficient sweetness in dairy food; additionally, part of the adult population suffers from associated lactose intolerance diseases. There are several methods to determine lactose such as spectrophotometry, polarimetry, infrared spectroscopy, titrimetry and chromatography. However these methods are tedious and time-consuming due to long sample preparation. These disadvantages stimulated the development of an enzymatic lactose biosensor. It employs two immobilized enzymes, beta-galactosidase and glucose oxidase and the quantitative analysis of lactose is based on determination of oxygen consumption in the enzymatic reaction. The influence of temperature on the biosensor signal was experimentally studied. It was observed that a nonlinear relationship exists between the electric response of the biosensor - provided by CAFCA (Computer Assisted Flow Control & Analysis - ANASYSCON, Hannover - and lactose concentration. In this work, attempts were made to correlate these variables using a simple nonlinear model and multilayered neural networks, with the latter providing the best modeling of the experimental data.

Adaptation in Coding by Large Populations of Neurons in the Retina

Science.gov (United States)

Ioffe, Mark L.

A comprehensive theory of neural computation requires an understanding of the statistical properties of the neural population code. The focus of this work is the experimental study and theoretical analysis of the statistical properties of neural activity in the tiger salamander retina. This is an accessible yet complex system, for which we control the visual input and record from a substantial portion--greater than a half--of the ganglion cell population generating the spiking output. Our experiments probe adaptation of the retina to visual statistics: a central feature of sensory systems which have to adjust their limited dynamic range to a far larger space of possible inputs. In Chapter 1 we place our work in context with a brief overview of the relevant background. In Chapter 2 we describe the experimental methodology of recording from 100+ ganglion cells in the tiger salamander retina. In Chapter 3 we first present the measurements of adaptation of individual cells to changes in stimulation statistics and then investigate whether pairwise correlations in fluctuations of ganglion cell activity change across different stimulation conditions. We then transition to a study of the population-level probability distribution of the retinal response captured with maximum-entropy models. Convergence of the model inference is presented in Chapter 4. In Chapter 5 we first test the empirical presence of a phase transition in such models fitting the retinal response to different experimental conditions, and then proceed to develop other characterizations which are sensitive to complexity in the interaction matrix. This includes an analysis of the dynamics of sampling at finite temperature, which demonstrates a range of subtle attractor-like properties in the energy landscape. These are largely conserved when ambient illumination is varied 1000-fold, a result not necessarily apparent from the measured low-order statistics of the distribution. Our results form a consistent

Dose-to-the-population exposure estimates for use of plutonium-238-powered artificial hearts

Energy Technology Data Exchange (ETDEWEB)

McKee, R.W.; Clark, L.L.; Cole, B.M.

1976-09-01

Estimates of dose to the population from /sup 238/Pu-powered artificial hearts were developed using a calculational model called REPRIEVE. This model develops the projected user population by incorporating assumptions regarding future heart disease death rates, the fraction dying who would be eligible candidates for artificial hearts, population projections, beginning implant rates, death rates after implant due to natural causes, and deaths caused by device failure. The user population was characterized by age, sex, household description, employment status and occupation. Census data on household descriptions and special surveys in selected cities provided the information necessary to describe persons exposed during both household and public activities. These surveys further defined distance and time of contact factors for these persons. Calculations using a dosemetry computer code defined the relationships between distance and dose. The validity of these calculations has been substantiated by experimental measurements.

Dose-to-the-population exposure estimates for use of plutonium-238-powered artificial hearts

International Nuclear Information System (INIS)

McKee, R.W.; Clark, L.L.; Cole, B.M.

1976-09-01

Estimates of dose to the population from 238 Pu-powered artificial hearts were developed using a calculational model called REPRIEVE. This model develops the projected user population by incorporating assumptions regarding future heart disease death rates, the fraction dying who would be eligible candidates for artificial hearts, population projections, beginning implant rates, death rates after implant due to natural causes, and deaths caused by device failure. The user population was characterized by age, sex, household description, employment status and occupation. Census data on household descriptions and special surveys in selected cities provided the information necessary to describe persons exposed during both household and public activities. These surveys further defined distance and time of contact factors for these persons. Calculations using a dosemetry computer code defined the relationships between distance and dose. The validity of these calculations has been substantiated by experimental measurements

Interactive Development-oriented Poverty Reduction Model for Bijie Experimental Region under the Guidance of Scientific Outlook on Development

Institute of Scientific and Technical Information of China (English)

Faliang; YU; Lisong; CHEN

2013-01-01

Bijie Experimental Region takes the ecological construction as the guarantee and takes population control as the key,to promote development-oriented poverty reduction and explore benign interaction between development-oriented poverty reduction and ecological construction and population control.Development-oriented poverty reduction model includes combination of raising crops and livestock,coordinated development of multiple wealth sources,transferring labor,and partner assistance;ecological construction model includes"Five sons passed imperial examinations",desertification control,agricultural circular economy,and project promotion;population control models includes human-land linkage,combination of favorable policies and propaganda and education,and combination of ambition arousing and education promotion.

The role of misrepair in experimental mutagenesis

International Nuclear Information System (INIS)

Yamaguchi, Hikoyuki

1983-01-01

Mutagenesis is classified as being either mispairing occuring at the time of chromosome replication or as being misrepair occuring when damaged nucleotides are converted to the paired ones. In the cell population of the root meristem of barley which is considered to be steadystate, the possibility of the selective segregation of the newly synthesized and the older template strands of DNA at mitosis was studied by the incorporation of 3 H-thymidine. Stochastic removal of de novo synthesized DNA strand to a zone of non-dividing cell population was unlikely. Thus, it has been concluded that there is special mechanisms for protecting the integrity of the DNA by removing the mispairing lesions. Barly seeds first exposed to a low level γ-radiation before treating with ethylmethane sulfonate. Survival rate of M 1 plants as well as mutation frequency of M 2 were higher for the combined treatment than for single treatment of chemical mutagen. A mutational response of barley cell to DNA damaging agent was much affected by a previous treatment with mutagens. It is suggested that in the experimental mutagenesis misrepair plays rather an important role than mispairing. (author)

Population Growth and National Population Policy of India

Science.gov (United States)

Thukral, A. K.; Singh, B. P.

2008-01-01

The population growth in India may overtake China by the year 2030. The National Population Policy of India targets population stabilization in India by the year 2045. The present paper carries out objective analysis of the population growth in India in terms of change in specific growth. At the present rate of specific growth rate decline, the population by the end of the century will be 2.49 billion. For the population to achieve zero growth by the year 2045, a decline in specific growth rate will have to be achieved at the rate of 0.000428 per year.

Experimental illumination of natural habitat--an experimental set-up to assess the direct and indirect ecological consequences of artificial light of different spectral composition.

Science.gov (United States)

Spoelstra, Kamiel; van Grunsven, Roy H A; Donners, Maurice; Gienapp, Phillip; Huigens, Martinus E; Slaterus, Roy; Berendse, Frank; Visser, Marcel E; Veenendaal, Elmar

2015-05-05

Artificial night-time illumination of natural habitats has increased dramatically over the past few decades. Generally, studies that assess the impact of artificial light on various species in the wild make use of existing illumination and are therefore correlative. Moreover, studies mostly focus on short-term consequences at the individual level, rather than long-term consequences at the population and community level-thereby ignoring possible unknown cascading effects in ecosystems. The recent change to LED lighting has opened up the exciting possibility to use light with a custom spectral composition, thereby potentially reducing the negative impact of artificial light. We describe here a large-scale, ecosystem-wide study where we experimentally illuminate forest-edge habitat with different spectral composition, replicated eight times. Monitoring of species is being performed according to rigid protocols, in part using a citizen-science-based approach, and automated where possible. Simultaneously, we specifically look at alterations in behaviour, such as changes in activity, and daily and seasonal timing. In our set-up, we have so far observed that experimental lights facilitate foraging activity of pipistrelle bats, suppress activity of wood mice and have effects on birds at the community level, which vary with spectral composition. Thus far, we have not observed effects on moth populations, but these and many other effects may surface only after a longer period of time. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Current Parental Depression and Offspring Perceived Self-Competence: A Quasi-Experimental Examination

OpenAIRE

Class, Quetzal A.; D’Onofrio, Brian M.; Singh, Amber L.; Ganiban, Jody M.; Spotts, E. L.; Lichtenstein, Paul; Reiss, David; Neiderhiser, Jenae M.

2012-01-01

A genetically-informed, quasi-experimental design was used to examine the genetic and environmental processes underlying associations between current parental depressive symptoms and offspring perceived self-competence. Participants, drawn from a population-based Swedish sample, were 852 twin pairs and their male (52%) and female offspring aged 15.7 ± 2.4 years. Parental depressive symptoms were measured using the Center for Epidemiological Studies Depression scale. Offspring perceived self-c...

Some effects of temperature and starvation on the bivalve @iDonax vittatus@@ (da Costa) in experimental laboratory populations

Digital Repository Service at National Institute of Oceanography (India)

Ansell, A.D.; Sivadas, P.

The effect of temperature on the body weight and composition, and on respiration, filtration and NH, excretion of the bivalve Donax uittatus (da Costa) has been investigated in laboratory-maintained populations under conditions of starvation In all...

Revisiting the role of individual variability in population persistence and stability.

Directory of Open Access Journals (Sweden)

Andrew Morozov

Full Text Available Populations often exhibit a pronounced degree of individual variability and this can be important when constructing ecological models. In this paper, we revisit the role of inter-individual variability in population persistence and stability under predation pressure. As a case study, we consider interactions between a structured population of zooplankton grazers and their predators. Unlike previous structured population models, which only consider variability of individuals according to the age or body size, we focus on physiological and behavioural structuring. We first experimentally demonstrate a high degree of variation of individual consumption rates in three dominant species of herbivorous copepods (Calanus finmarchicus, Calanus glacialis, Calanus euxinus and show that this disparity implies a pronounced variation in the consumption capacities of individuals. Then we construct a parsimonious predator-prey model which takes into account the intra-population variability of prey individuals according to behavioural traits: effectively, each organism has a 'personality' of its own. Our modelling results show that structuring of prey according to their growth rate and vulnerability to predation can dampen predator-prey cycles and enhance persistence of a species, even if the resource stock for prey is unlimited. The main mechanism of efficient top-down regulation is shown to work by letting the prey population become dominated by less vulnerable individuals when predator densities are high, while the trait distribution recovers when the predator densities are low.

Causes and consequences of complex population dynamics in an annual plant, Cardamine pensylvanica

Energy Technology Data Exchange (ETDEWEB)

Crone, E.E.

1995-11-08

The relative importance of density-dependent and density-independent factors in determining the population dynamics of plants has been widely debated with little resolution. In this thesis, the author explores the effects of density-dependent population regulation on population dynamics in Cardamine pensylvanica, an annual plant. In the first chapter, she shows that experimental populations of C. pensylvanica cycled from high to low density in controlled constant-environment conditions. These cycles could not be explained by external environmental changes or simple models of direct density dependence (N{sub t+1} = f[N{sub t}]), but they could be explained by delayed density dependence (N{sub t+1} = f[N{sub t}, N{sub t+1}]). In the second chapter, she shows that the difference in the stability properties of population growth models with and without delayed density dependence is due to the presence of Hopf as well as slip bifurcations from stable to chaotic population dynamics. She also measures delayed density dependence due to effects of parental density on offspring quality in C. pensylvanica and shows that this is large enough to be the cause of the population dynamics observed in C. pensylvanica. In the third chapter, the author extends her analyses of density-dependent population growth models to include interactions between competing species. In the final chapter, she compares the effects of fixed spatial environmental variation and variation in population size on the evolutionary response of C. pensylvanica populations.

Population trapping: The mechanism for the lost resonance lines in Pm-like ions

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Kato, Daiji; Sakaue, Hiroyuki A.; Murakami, Izumi; Nakamura, Nobuyuki

2017-10-01

We report a population kinetics study on line emissions of the Pm-like Bi22+ performed by using a collisional-radiative (CR) model. Population rates of excited levels are analyzed to explain the population trapping in the 4f135s2 state which causes the loss of the 5s - 5p resonance lines in emission spectra. Based on the present analysis, we elucidate why the population trapping is not facilitated for a meta-stable excited level of the Sm-like Bi21+. The emission line spectra are calculated for the Pm-like isoelectronic sequence from Au18+ through W13+ and compared with experimental measurements by electron-beam-ion-traps (EBITs). Structures of the spectra are similar for all of the cases except for calculated W13+ spectra. The calculated spectra are hardly reconciled with the measured W13+ spectrum using the compact electron-beam-ion-trap (CoBIT) [Phys. Rev. A 92 (2015) 022510].

Meeting of the IUFRO Working Party “Ecological and Population Genetics”

CERN Document Server

1985-01-01

When we consider the main object of forestry, the tree, it immediately becomes clear why experimental population geneticists have been so hesitant in making this object a primary concern of their research. Trees are very long-living organisms with generation intervals frequently exceeding those of their investigators by multiples. They virtually exclude, therefore, application of the classical methods of population genetics since these are based on observing genetic structures over generations. This situation, where the limits set to observation are so severe, particularly requires close cooperation between theory and experiment. It also requires careful consideration of results obtained for organisms other than trees, in order to gain additional insights by comparing the results for trees with those for other organisms. Yet, the greatest challenge to population and ecological genetics probably originates from the fact that forests are very likely to be the most complex ecosystems of all, even in some cases w...

Prediction of human pharmacokinetics of activated recombinant factor VII and B-domain truncated factor VIII from animal population pharmacokinetic models of haemophilia

DEFF Research Database (Denmark)

Larsen, Malte Selch; Juul, Rasmus Vestergaard; Groth, Andreas Velsing

2018-01-01

activated factor VII (rFVIIa) and recombinant factor VIII (rFVIII) in several experimental animal models using population PK modelling, and apply a simulation-based approach to evaluate how well the developed animal population PK models predict human PK. PK models were developed for rFVIIa and r...

Learned Helplessness and Depression in a Clinical Population: A Test of Two Behavioral Hypotheses

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And Others; Price, Kenneth P.

1978-01-01

This study was undertaken to extend the learned helplessness phenomenon to a clinical population and to test the competing hypotheses of Seligman and Lewinsohn. 96 male hospitalized psychiatric and medical patients were randomly assigned to one of four experimental conditions. Results replicate the learned helplessness phenomenon in a group of…

Effects of experimental removal of Barred Owls on population demography of Northern Spotted Owls in Washington and Oregon—2017 progress report

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Wiens, J. David; Dugger, Katie M.; Lesmeister, Damon B.; Dilione, Krista E.; Simon, David C.

2018-05-21

Populations of Northern Spotted Owls (Strix occidentalis caurina; hereinafter referred to as Spotted Owl) are declining throughout this subspecies’ geographic range. Evidence indicates that competition with invading populations of Barred Owls (S. varia) has contributed significantly to those declines. A pilot study in California showed that localized removal of Barred Owls coupled with conservation of suitable forest conditions can slow or even reverse population declines of Spotted Owls. It remains unknown, however, whether similar results can be obtained in areas with different forest conditions, greater densities of Barred Owls, and fewer remaining Spotted Owls. During 2015–17, we initiated a before-after-control-impact (BACI) experiment at three study areas in Oregon and Washington to determine if removal of Barred Owls can improve population trends of Spotted Owls. Each study area had at least 20 years of pre-treatment demographic data on Spotted Owls, and represented different forest conditions occupied by the two owl species in the Pacific Northwest. This report describes research accomplishments and preliminary results from the first 2.5 years (March 2015–August 2017) of the planned 5-year experiment.

Climate warming drives local extinction: Evidence from observation and experimentation

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Panetta, Anne Marie; Stanton, Maureen L.; Harte, John

2018-01-01

Despite increasing concern about elevated extinction risk as global temperatures rise, it is difficult to confirm causal links between climate change and extinction. By coupling 25 years of in situ climate manipulation with experimental seed introductions and both historical and current plant surveys, we identify causal, mechanistic links between climate change and the local extinction of a widespread mountain plant (Androsace septentrionalis). Climate warming causes precipitous declines in population size by reducing fecundity and survival across multiple life stages. Climate warming also purges belowground seed banks, limiting the potential for the future recovery of at-risk populations under ameliorated conditions. Bolstered by previous reports of plant community shifts in this experiment and in other habitats, our findings not only support the hypothesis that climate change can drive local extinction but also foreshadow potentially widespread species losses in subalpine meadows as climate warming continues. PMID:29507884

Farm Population of the United States: 1977. Current Population Reports: Farm Population.

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Banks, Vera J.; DeAre, Diana

The farm population has declined fairly steadily for more than half a century. By 1970 the proportion of the U.S. population residing on farms had fallen to about 5 per cent, and by 1977 had dropped to 3.6 per cent. About 1.4 per cent of the farm population was of Spanish origin (represented for the first time in this year's report), as compared…

Ecological context of the evolution of self-pollination in Clarkia xantiana: population size, plant communities, and reproductive assurance.

Science.gov (United States)

Moeller, David A; Geber, Monica A

2005-04-01

The repeated evolutionary transition from outcrossing to self-pollination in flowering plants has been suggested to occur because selfing provides reproductive assurance. Reports from biogeographical and ecological surveys indicate that selfing taxa are often associated with stressful and ephemeral environments, situations in which plant abundance is low (e.g., Baker's law) and with novel plant communities, however experimental tests of ecological hypotheses are few. In this study, we examined the ecological context of selection on mating system traits (herkogamy and protandry) in a California annual, Clarkia xantiana, where natural selfing populations differ from outcrossing populations in that they are often of small size or low density and occur mainly outside the range of pollinator-sharing congeners. We constructed artificial populations of plants with broad genetic variation in floral traits and manipulated two ecological factors, plant population size, and the presence versus absence of pollinator-sharing congeners, in the center of the geographic range of outcrossing populations. We found evidence for context-dependent selection on herkogamy and protandry via female fitness in which reduced traits, which promote autonomous selfing, were favored in small populations isolated from congeners whereas selection was comparatively weak in large populations or when congeners were present. In small, isolated populations, the fertility of plants with low herkogamy or protandry was elevated by 66% and 58%, respectively, compared to those with high herkogamy or protandry. The presence of pollinator-sharing congeners augmented bee visitation rates to C. xantiana flowers by 47% for all bees and by 93% for pollen specialists. By facilitating pollinator visitation, congeners mitigated selection on mating system traits in small populations, where outcross mating success is often low (the Allee effect). We also found support for the hypothesis that pollinator availability

Population dynamics of Borrelia burgdorferi in Lyme disease

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Sebastian Christoph Binder

2012-03-01

Full Text Available Many chronic inflammatory diseases are known to be caused by persistent bacterial or viral infections. A well-studied example is the tick-borne infection by the gram-negative Spirochaetes of the genus Borrelia in humans and other mammals, causing severe symptoms of chronic inflammation and subsequent tissue damage (Lyme Disease, particularly in large joints and the central nervous system, but also in the heart and other tissues of untreated patients. Although killed efficiently by human phagocytic cells in vitro, Borrelia exhibits a remarkably high infectivity in mice and men. In experimentally infected mice, the first immune response almost clears the infection. However, approximately one week post infection, the bacterial population recovers and reaches an even larger size before entering the chronic phase. We developed a mathematical model describing the bacterial growth and the immune response against Borrelia burgdorferi in the C3H mouse strain that has been established as an experimental model for Lyme disease. The peculiar dynamics of the infection exclude two possible mechanistic explanations for the regrowth of the almost cleared bacteria. Neither the hypothesis of bacterial dissemination to different tissue nor a limitation of phagocytic capacity were compatible with experiment. The mathematical model predicts that Borrelia recovers from the strong initial immune response by the regrowth of an immune-resistant sub-population of the bacteria. The chronic phase appears as an equilibration of bacterial growth and adaptive immunity. This result has major implications for the development of the chronic phase of Borrelia infections as well as on potential protective clinical interventions.

The frequency of allelic lethals and complementation maps in natural populations of drosophila melanogaster from Mexico

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Salceda Victor M.

2004-01-01

Full Text Available Departing from a previous study on the genetic loads affecting the second chromosome of Drosophila melanogaster in four natural populations, 171 lethal chromosomes were recovered and maintained as a balanced stocks in the condition Cy L / 1 (l=lethal; of those lethais 24 correspond to population A, 50 to populations B and C and 47 to population D. later on an intra-population allelism test for the four populations was performed for each one. A total of 3807 inter lethal crosses were done yielding a total of i 10 allelic combinations, from them the respective percentage of allelism for each population was calculated and they are as follow: 3.98 % for population A, 1.80 % for population B, 3.67 % for population C and 2.96 % for population D. the observed values for the frequency of allelism in these populations are not significantly different from those reported by other authors in similar studies in natural and/or experimental populations. Beside these values the frequency for singles, doubles, triplets and even quadruplets present in each population were determined, they shown the presence of various complementation maps due to the clustering of few different lethals: also a large complementation map formed by a large cluster involving the presence of 26 different lethals found in population D all of them combined constituting a single unit was found.

Impacts of drought and crayfish invasion on stream ecosystem structure and function

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Magoulick, Daniel D.

2014-01-01

Drought and seasonal drying can be important disturbance events in many small streams, leading to intermittent or isolated habitats. Many small streams contain crayfish populations that are often keystone or dominant species in these systems. I conducted an experiment in stream mesocosms to examine the effects of drought and potential ecological redundancy of a native and invasive crayfish species. I examined the effects of drought (drought or control) and crayfish presence (none, native crayfish Orconectes eupunctus or invasive crayfish Orconectes neglectus) on stream mesocosm structure and function (leaf breakdown, community metabolism, periphyton, sediment and chironomid densities) in a fully factorial design. Each mesocosm contained a deep and shallow section, and drought treatments had surface water present (5-cm depth) in deep sections where tiles and leaf packs were placed. Drought and crayfish presence did not interact for any response variable. Drought significantly reduced leaf breakdown, and crayfish presence significantly increased leaf breakdown. However, the native and invasive crayfish species did not differ significantly in their effects on leaf breakdown. Drought significantly reduced primary production and community respiration overall, whereas crayfish presence did not significantly affect primary production and community respiration. Neither drought nor crayfish presence significantly affected periphyton overall. However, drought significantly reduced autotrophic index (AI), and crayfish presence increased AI. Inorganic sediment and chironomid density were not affected by drought, but both were significantly reduced by crayfish presence. O. eupunctus reduced AI and sediment more than O. neglectus did. Neither drought nor crayfish species significantly affected crayfish growth or survival. Drought can have strong effects on ecosystem function, but weaker effects on benthic structure. Crayfish can have strong effects on ecosystem

Experimental Ascaris suum infection in the pig: protective memory response after three immunizations and effect of intestinal adult worm population

DEFF Research Database (Denmark)

Jungersen, Gregers; Eriksen, Lis; Roepstorff, Allan

1999-01-01

The protective immune response to larval migration in pigs, with or without adult intestinal worm populations, 10 weeks after 3 weekly Ascaris suum inoculations, was studied in 45 pigs. Controlled adult worm populations were achieved by oral transfer of 10 adult worms to previously immunized pigs...... after anthelmintic drenching. A significant reduction in larval recovery from lungs on day 7, and small intestine on day 14, was observed in immunized pigs compared with previously uninfected control pigs after challenge inoculation. The strong anamnestic response to larval migration was characterized...

Prey preferences of aquatic insects: potential implications for the regulation of wetland mosquitoes.

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Saha, N; Aditya, G; Saha, G K

2014-03-01

Wetlands are potential sites for mosquito breeding and are thus important in the context of public health. The use of chemical and microbial controls is constrained in wetlands in view of their potential impact on the diverse biota. Biological control using generalist aquatic insects can be effective, provided a preference for mosquito larvae is exhibited. The mosquito prey preferences of water bugs and larvae of odonate species were evaluated using chironomid larvae, fish fingerlings and tadpoles as alternative prey. Manly's selectivity (αi ) values with 95% confidence intervals (CIs) were estimated to judge prey preference patterns. Multivariate analysis of variance (manova) and standardized canonical coefficients were used to test the effects of density on prey selectivity. The αi values indicated a significant preference (P insect predators tested for mosquito larvae over the alternative prey as a density-dependent function. On a comparative scale, chironomid larvae had the highest impact as alternative prey. In a multiple-prey experiment, predators showed a similar pattern of preference for mosquito larvae over alternative prey, reflecting a significant (P insect predators can effectively reduce mosquito density in the presence of multiple alternative prey. © 2013 The Royal Entomological Society.

Effects of Alachlor and Metolachlor on Microbial Populations in the Soil

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Ismail, B. S.

2005-01-01

Full Text Available A study of the impact of two acetanilide herbicides, viz. alachlor and metolachlor on bacterial and fungal populations and biomass in the Sungai Buluh soil series samples was carried out under laboratory conditions. The effects of the two herbicides were monitored for 70 days under ambient conditions. Metolachlor caused greater reduction in bacterial counts than on fungal populations. There was approximately 75% reduction in bacterial counts 14 days after treatment (DAT with 2 µg/g metolachlor. Alachlor however was less toxic to bacterial and fungal populations. Alachlor caused a reduction in bacterial counts at 7 and 14 DAT with 2µg/g or above. Fungal population decreased significantly in the presence of 20 µg/g alachlor at 7 DAT but no further effects were observed as the incubation period was prolonged. The study showed that the microbial biomass immediately decreased significantly in the presence of 2 µg/g or more of metolachlor at 0 and 28 DAT. Alachlor, on the other hands, at the lowest experimental dose of 2 µg/g reduced the microbial biomass almost immediately upon incubation, but had no further effects when the incubation period was prolonged.

A practical guide and perspectives on the use of experimental pain modalities with children and adolescents

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Birnie, Kathryn A; Caes, Line; Wilson, Anna C; Williams, Sara E; Chambers, Christine T

2014-01-01

SUMMARY Use of experimental pain is vital for addressing research questions that would otherwise be impossible to examine in the real world. Experimental induction of pain in children is highly scrutinized given the potential for harm and lack of direct benefit to a vulnerable population. However, its use has critically advanced our understanding of the mechanisms, assessment and treatment of pain in both healthy and chronically ill children. This article introduces various experimental pain modalities, including the cold pressor task, the water load symptom provocation test, thermal pain, pressure pain and conditioned pain modulation, and discusses their application for use with children and adolescents. It addresses practical implementation and ethical issues, as well as the advantages and disadvantages offered by each task. The incredible potential for future research is discussed given the array of experimental pain modalities now available to pediatric researchers. PMID:24641434

A probabilistic model for cell population phenotyping using HCS data.

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Edouard Pauwels

Full Text Available High Content Screening (HCS platforms allow screening living cells under a wide range of experimental conditions and give access to a whole panel of cellular responses to a specific treatment. The outcome is a series of cell population images. Within these images, the heterogeneity of cellular response to the same treatment leads to a whole range of observed values for the recorded cellular features. Consequently, it is difficult to compare and interpret experiments. Moreover, the definition of phenotypic classes at a cell population level remains an open question, although this would ease experiments analyses. In the present work, we tackle these two questions. The input of the method is a series of cell population images for which segmentation and cellular phenotype classification has already been performed. We propose a probabilistic model to represent and later compare cell populations. The model is able to fully exploit the HCS-specific information: "dependence structure of population descriptors" and "within-population variability". The experiments we carried out illustrate how our model accounts for this specific information, as well as the fact that the model benefits from considering them. We underline that these features allow richer HCS data analysis than simpler methods based on single cellular feature values averaged over each well. We validate an HCS data analysis method based on control experiments. It accounts for HCS specificities that were not taken into account by previous methods but have a sound biological meaning. Biological validation of previously unknown outputs of the method constitutes a future line of work.

Experimental demonstration of the fitness consequences of an introduced parasite of Darwin's finches.

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Jennifer A H Koop

2011-05-01

Full Text Available Introduced parasites are a particular threat to small populations of hosts living on islands because extinction can occur before hosts have a chance to evolve effective defenses. An experimental approach in which parasite abundance is manipulated in the field can be the most informative means of assessing a parasite's impact on the host. The parasitic fly Philornis downsi, recently introduced to the Galápagos Islands, feeds on nestling Darwin's finches and other land birds. Several correlational studies, and one experimental study of mixed species over several years, reported that the flies reduce host fitness. Here we report the results of a larger scale experimental study of a single species at a single site over a single breeding season.We manipulated the abundance of flies in the nests of medium ground finches (Geospiza fortis and quantified the impact of the parasites on nestling growth and fledging success. We used nylon nest liners to reduce the number of parasites in 24 nests, leaving another 24 nests as controls. A significant reduction in mean parasite abundance led to a significant increase in the number of nests that successfully fledged young. Nestlings in parasite-reduced nests also tended to be larger prior to fledging.Our results confirm that P. downsi has significant negative effects on the fitness of medium ground finches, and they may pose a serious threat to other species of Darwin's finches. These data can help in the design of management plans for controlling P. downsi in Darwin's finch breeding populations.

Lake Michigan sediments: in-situ tracer measurements using a rare-earth element

International Nuclear Information System (INIS)

Krezoski, J.R.

1985-01-01

A rare-earth-element (REE) tracer technique is used to describe in-situ biogenic and physical sediment reworking in Green Bay, Lake Michigan. Europium, a stable, high neutron capture cross section REE, added as Eu 2 O 3 to the sediment-water interface of quadrants of natural bottom muds, served as a tracer of surficial sediment redistribution in an oligochaete-chironomid-sphaerid benthic community. Sixty days after applying a millimeter thick layer of Eu to the undisturbed sediments, divers collected cores from within and around the experimental quadrants that were sectioned in 1 cm intervals to 10 cm and were analyzed by neutron activation analysis. Minute amounts of the activated REE in the sediment, detectable through high resolution gamma spectroscopy, revealed significant burial (to 2.4 cm) and broadening of the marked layer. A calculated bio-diffusion coefficient (K/sub B/ = 2.26 +/- 1.56 x 10 -6 cm 2 sec -1 ), based on a model from earlier microcosm studies, compares remarkably well with experimentally determined values and represents the first application of this model to field data. The method provides reliable estimates of in-situ reworking rates and is more accurate than time-averaged geochronology studies which rely on atmospherically derived radionuclides

Systematic heterogenization for better reproducibility in animal experimentation.

Science.gov (United States)

Richter, S Helene

2017-08-31

The scientific literature is full of articles discussing poor reproducibility of findings from animal experiments as well as failures to translate results from preclinical animal studies to clinical trials in humans. Critics even go so far as to talk about a "reproducibility crisis" in the life sciences, a novel headword that increasingly finds its way into numerous high-impact journals. Viewed from a cynical perspective, Fett's law of the lab "Never replicate a successful experiment" has thus taken on a completely new meaning. So far, poor reproducibility and translational failures in animal experimentation have mostly been attributed to biased animal data, methodological pitfalls, current publication ethics and animal welfare constraints. More recently, the concept of standardization has also been identified as a potential source of these problems. By reducing within-experiment variation, rigorous standardization regimes limit the inference to the specific experimental conditions. In this way, however, individual phenotypic plasticity is largely neglected, resulting in statistically significant but possibly irrelevant findings that are not reproducible under slightly different conditions. By contrast, systematic heterogenization has been proposed as a concept to improve representativeness of study populations, contributing to improved external validity and hence improved reproducibility. While some first heterogenization studies are indeed very promising, it is still not clear how this approach can be transferred into practice in a logistically feasible and effective way. Thus, further research is needed to explore different heterogenization strategies as well as alternative routes toward better reproducibility in animal experimentation.

Alexithymia in the German general population.

Science.gov (United States)

Franz, Matthias; Popp, Kerstin; Schaefer, Ralf; Sitte, Wolfgang; Schneider, Christine; Hardt, Jochen; Decker, Oliver; Braehler, Elmar

2008-01-01

The Toronto-Alexithymia-Scale (TAS-20) is used worldwide as a valid measurement of alexithymia. Until now, population-based standardization and cut-off values of the German TAS-20 version have not been available. This study provides these by means of a representative German sample and by investigating the factorial structure of the TAS-20. Data were generated from a representative random sample of the German general population (1,859 subjects aged between 20 and 69). The TAS-20 sum score was normally distributed. The mean value was 49.5 (SD=9.3) in men and 48.2 (SD=9.2) in women. Divorce, single and low social status were associated with enhanced sum scores. Ten percent of the population exceeded the TAS-20 sum score threshold of >or=61. The 66th percentile reached 53 for men and 52 for women. Factor analysis identified three factors that match the scales of the English original version. An additional fourth factor ("importance of emotional introspection") was extracted. Total explanation of variance by these four factors was 52.27%. The sum score of the German TAS-20 version is suited for the standardized measure of alexithymia. For selecting alexithymic individuals in experimental studies, the cut-off >or=61 is possibly too restrictive. Therefore, we propose the 66th percentile for the identification of high alexithymics. The TAS-20 sum score is associated with important socio-demographic variables. The factorial structure is reliable; the fourth factor ("importance of emotional introspection") provides differentiation of content and allows for enhanced explanation of variance.

Fasciola hepatica: comparative metacercarial productions in experimentally-infected Galba truncatula and Pseudosuccinea columella

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Vignoles Philippe

2015-01-01

Full Text Available As large numbers of metacercariae of Fasciola hepatica are necessary for research, experimental infections of Galba truncatula and Pseudosuccinea columella with this digenean were carried out to determine the better intermediate host for metacercarial production and, consequently, the most profitable snail for decreasing the cost price of these larvae. Pre-adult snails (4 mm in shell height originating from two populations per lymnaeid species were individually exposed to two or five miracidia, raised at 23 °C and followed for cercarial shedding up to their death. Compared to values noted in G. truncatula, the survival of P. columella on day 30 post-exposure was significantly greater, while the prevalence of F. hepatica infection was significantly lower. In the four P. columella groups, metacercarial production was significantly greater than that noted in the four groups of G. truncatula (347–453 per cercariae-shedding snail versus 163–275, respectively. Apart from one population of G. truncatula, the use of five miracidia per snail at exposure significantly increased the prevalence of F. hepatica in P. columella and the other population of G. truncatula, whereas it did not have any clear effect on the mean number of metacercariae. The use of P. columella for experimental infections with F. hepatica resulted in significantly higher metacercarial production than that noted with G. truncatula, in spite of a lower prevalence for the former lymnaeid. This finding allows for a significant decrease in the cost price of these larvae for commercial production.

Changes in Population Dynamics in Mutualistic versus Pathogenic Viruses

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Marilyn J. Roossinck

2011-01-01

Full Text Available Although generally regarded as pathogens, viruses can also be mutualists. A number of examples of extreme mutualism (i.e., symbiogenesis have been well studied. Other examples of mutualism are less common, but this is likely because viruses have rarely been thought of as having any beneficial effects on their hosts. The effect of mutualism on the population dynamics of viruses is a topic that has not been addressed experimentally. However, the potential for understanding mutualism and how a virus might become a mutualist may be elucidated by understanding these dynamics.

Experimentally driven atomistic model of 1,2 polybutadiene

Energy Technology Data Exchange (ETDEWEB)

Gkourmpis, Thomas, E-mail: thomas.gkourmpis@borealisgroup.com [Polymer Science Centre, J. J. Thomson Physical Laboratory, Department of Physics, University of Reading, Reading RG6 6AF (United Kingdom); Mitchell, Geoffrey R. [Polymer Science Centre, J. J. Thomson Physical Laboratory, Department of Physics, University of Reading, Reading RG6 6AF (United Kingdom); Centre for Rapid and Sustainable Product Development, Institute Polytechnic Leiria, Marinha Grande (Portugal)

2014-02-07

We present an efficient method of combining wide angle neutron scattering data with detailed atomistic models, allowing us to perform a quantitative and qualitative mapping of the organisation of the chain conformation in both glass and liquid phases. The structural refinement method presented in this work is based on the exploitation of the intrachain features of the diffraction pattern and its intimate linkage with atomistic models by the use of internal coordinates for bond lengths, valence angles, and torsion rotations. Atomic connectivity is defined through these coordinates that are in turn assigned by pre-defined probability distributions, thus allowing for the models in question to be built stochastically. Incremental variation of these coordinates allows for the construction of models that minimise the differences between the observed and calculated structure factors. We present a series of neutron scattering data of 1,2 polybutadiene at the region 120–400 K. Analysis of the experimental data yields bond lengths for Cî—¸C and C î—» C of 1.54 Å and 1.35 Å, respectively. Valence angles of the backbone were found to be at 112° and the torsion distributions are characterised by five rotational states, a three-fold trans-skew± for the backbone and gauche± for the vinyl group. Rotational states of the vinyl group were found to be equally populated, indicating a largely atactic chan. The two backbone torsion angles exhibit different behaviour with respect to temperature of their trans population, with one of them adopting an almost all trans sequence. Consequently, the resulting configuration leads to a rather persistent chain, something indicated by the value of the characteristic ratio extrapolated from the model. We compare our results with theoretical predictions, computer simulations, RIS models and previously reported experimental results.

Populations of models: A new approach for understanding the mechanisms of atrial fibrillation

Energy Technology Data Exchange (ETDEWEB)

Liberos, A.; Bueno-Orovio, A.; Rodrigo, M.; Ravens, U.; Hernandez, I.; Fernandez-Aviles, F.; Guillem, M.S.; Rodriguez, B.; Climent, A.M.

2016-07-01

Inter-subject variability explains the diverging effects to pharmacological treatments of AF reported in the literature. A population of 173 mathematical models of remodeled human atrial tissue with realistic inter–subject variability was developed based on action potential recordings of 149 patients diagnosed with AF. The ranges of 6 biomarkers measured from the patchclamp studies were appropriately covered. The resulting population shows that multiple combinations of variations in the ionic conductances result in AF models that cover the range of biomarkers measured experimentally. Introducing restrictions associated with pacing rate limits the number of models, restricts calcium transient amplitudes, and shows significant differences in the distribution of variation of parameters associated with INa, IKr and INaK ionic currents. Populations of models will improve the development of new antiarrhythmic treatments preventing undesired effects associated with differences between individuals. (Author)

The impact of maternally derived immunity on influenza A virus transmission in neonatal pig populations.

Science.gov (United States)

Allerson, Matt; Deen, John; Detmer, Susan E; Gramer, Marie R; Joo, Han Soo; Romagosa, Anna; Torremorell, Montserrat

2013-01-07

The commonality of influenza A virus (IAV) exposure and vaccination on swine farms in the United States ensures that the majority of neonatal pigs will have some degree of maternal immunity to IAV. The influence of maternal immunity on IAV transmission in neonatal pig populations will impact virus prevalence and infection dynamics across pig populations. The main objective of this study was to assess the impact of maternally derived immunity on IAV transmission in an experimental setting. Neonatal pigs suckled colostrum and derived maternal (passive) immunity from sows in one of three treatment groups: (a) non-vaccinated control (CTRL) or vaccinated with (b) homologous (PASSV-HOM) or (c) heterologous (PASSV-HET) inactivated experimental IAV vaccines. Sentinel neonatal pigs derived from the groups above were challenged with IAV via direct contact with an experimentally infected pig (seeder pig) and monitored for IAV infection daily via nasal swab sampling. A susceptible-infectious-recovered (SIR) experimental model was used to obtain and estimate transmission parameters in each treatment group via a generalized linear model. All sentinel pigs in the CTRL (30/30) and PASSV-HET (30/30) groups were infected with IAV following contact with the seeder pigs and the reproduction ratio estimates (95% confidence interval) were 10.4 (6.6-15.8) and 7.1 (4.2-11.3), respectively. In contrast, 1/20 sentinel pigs in the PASSV-HOM group was infected following contact with the seeder pigs and the reproduction ratio estimate was significantly lower compared to the CTRL and PASSV-HET groups at 0.8 (0.1-3.7). Under the conditions of this study, IAV transmission was reduced in neonatal pigs with homologous maternal immunity compared to seronegative neonatal pigs and pigs with heterologous maternal immunity as defined in this study. This study provides estimates for IAV transmission in pigs with differing types of maternal immunity which may describe the influence of maternal immunity on

Importance of benthic production to fish populations in Lake Mead prior to the establishment of quagga mussels

Science.gov (United States)

Umek, John; Chandra, Sudeep; Rosen, Michael; Wittmann, Marion; Sullivan, Joe; Orsak, Erik

2010-01-01

Limnologists recently have developed an interest in quantifying benthic resource contributions to higher-level consumers. Much of this research focuses on natural lakes with very little research in reservoirs. In this study, we provide a contemporary snapshot of the food web structure of Lake Mead to evaluate the contribution of benthic resources to fish consumers. In addition, we document the available food to fishes on soft sediments and changes to the invertebrate community over 2 time periods. Benthic invertebrate food availability for fishes is greater in Las Vegas Bay than Overton Arm. Las Vegas Bay is dominated by oligochaetes, whose biomass increased with depth, while Overton Arm is dominated by chironomids, whose biomass did not change with depth. Diet and isotopic measurements indicate the fish community largely relies on benthic resources regardless of basin (Las Vegas Bay >80%; Overton Arm >92%); however, the threadfin shad likely contribute more to largemouth and striped bass production in Overton Arm versus Las Vegas Bay. A 2-time period analysis, pre and post quagga mussel establishment and during lake level declines, suggests there is no change in the density of benthic invertebrates in Boulder Basin, but there were greater abundances of select taxa in this basin by season and depth than in other basins. Given the potential of alterations as a result of the expansion of quagga mussel and the reliance of the fishery on benthic resources, future investigation of basin specific, benthic processes is recommended.

The cultural evolution of human communication systems in different sized populations: usability trumps learnability.

Science.gov (United States)

Fay, Nicolas; Ellison, T Mark

2013-01-01

This study examines the intergenerational transfer of human communication systems. It tests if human communication systems evolve to be easy to learn or easy to use (or both), and how population size affects learnability and usability. Using an experimental-semiotic task, we find that human communication systems evolve to be easier to use (production efficiency and reproduction fidelity), but harder to learn (identification accuracy) for a second generation of naïve participants. Thus, usability trumps learnability. In addition, the communication systems that evolve in larger populations exhibit distinct advantages over those that evolve in smaller populations: the learnability loss (from the Initial signs) is more muted and the usability benefits are more pronounced. The usability benefits for human communication systems that evolve in a small and large population is explained through guided variation reducing sign complexity. The enhanced performance of the communication systems that evolve in larger populations is explained by the operation of a content bias acting on the larger pool of competing signs. The content bias selects for information-efficient iconic signs that aid learnability and enhance usability.

Personality differences in two minnow populations that differ in their parasitism and predation risk

Directory of Open Access Journals (Sweden)

Raine eKortet

2015-02-01

Full Text Available Animals are often individually consistent in their behavior, not only over time, but also across different functional contexts. Recent research has focused on phenotypic and evolutionary mechanisms explaining such personality differences through selection. Parasitism and predation induce important mortality and fitness costs, and are thus the main candidates to create and maintain personality differences in the wild. Here, we present data on the behavioral consistency of the Eurasian minnow (Phoxinus phoxinus from two populations that live in different tributaries of the same river, but whose ecological environment differs fundamentally with regard to predation and parasitism. We experimentally demonstrate that minnow in both study populations are consistent in their boldness and activity. However, the two study populations differ notably: in the high predation and parasitism risk population fish show higher mean boldness, but tend to be less active than fish in low predation and parasitism risk population. Parasite (Diplostomum phoxini load was negatively, but not statistically significantly, associated with fish activity level. Our study suggests that parasitism and predation are likely important agents in the ecology and evolution of animal personalities.

The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection.

Science.gov (United States)

Payen, Celia; Di Rienzi, Sara C; Ong, Giang T; Pogachar, Jamie L; Sanchez, Joseph C; Sunshine, Anna B; Raghuraman, M K; Brewer, Bonita J; Dunham, Maitreya J

2014-03-20

Population adaptation to strong selection can occur through the sequential or parallel accumulation of competing beneficial mutations. The dynamics, diversity, and rate of fixation of beneficial mutations within and between populations are still poorly understood. To study how the mutational landscape varies across populations during adaptation, we performed experimental evolution on seven parallel populations of Saccharomyces cerevisiae continuously cultured in limiting sulfate medium. By combining quantitative polymerase chain reaction, array comparative genomic hybridization, restriction digestion and contour-clamped homogeneous electric field gel electrophoresis, and whole-genome sequencing, we followed the trajectory of evolution to determine the identity and fate of beneficial mutations. During a period of 200 generations, the yeast populations displayed parallel evolutionary dynamics that were driven by the coexistence of independent beneficial mutations. Selective amplifications rapidly evolved under this selection pressure, in particular common inverted amplifications containing the sulfate transporter gene SUL1. Compared with single clones, detailed analysis of the populations uncovers a greater complexity whereby multiple subpopulations arise and compete despite a strong selection. The most common evolutionary adaptation to strong selection in these populations grown in sulfate limitation is determined by clonal interference, with adaptive variants both persisting and replacing one another.

An experimental study of strong reciprocity in bacteria.

Science.gov (United States)

Inglis, R Fredrik; West, Stuart; Buckling, Angus

2014-02-01

Strong reciprocity, whereby cooperators punish non-cooperators, may help to explain the evolutionary success of cooperative behaviours. However, theory suggests that selection for strong reciprocity can depend upon tight genetic linkage between cooperation and punishment, to avoid the strategy being outcompeted by non-punishing cooperators. We tested this hypothesis using experimental populations of the bacterium Pseudomonas aeruginosa, which cooperate by producing iron-scavenging siderophores and, in this context, punish non-cooperators with toxins. Consistent with theory, we show that cooperative punishers can indeed invade cheats, but only when the traits are tightly linked. These results emphasize that punishment is only likely to be favoured when the punishment itself leads to a direct or indirect fitness benefit to the actor.

Quasispecies-like behavior observed in catalytic RNA populations evolving in a test tube.

Science.gov (United States)

Díaz Arenas, Carolina; Lehman, Niles

2010-03-23

During the RNA World, molecular populations were probably very small and highly susceptible to the force of strong random drift. In conjunction with Muller's Ratchet, this would have imposed difficulties for the preservation of the genetic information and the survival of the populations. Mechanisms that allowed these nascent populations to overcome this problem must have been advantageous. Using continuous in vitro evolution experimentation with an increased mutation rate imposed by MnCl2, it was found that clonal 100-molecule populations of ribozymes clearly exhibit certain characteristics of a quasispecies. This is the first time this has been seen with a catalytic RNA. Extensive genotypic sampling from two replicate lineages was gathered and phylogenetic networks were constructed to elucidate the structure of the evolving RNA populations. A common distribution was found in which a mutant sequence was present at high frequency, surrounded by a cloud of mutant with lower frequencies. This is a typical distribution of quasispecies. Most of the mutants in these clouds were connected by short Hamming distance values, indicating their close relatedness. The quasispecies nature of mutant RNA clouds facilitates the recovery of genotypes under pressure of being removed from the population by random drift. The empirical populations therefore evolved a genotypic resiliency despite a high mutation rate by adopting the characteristics of quasispecies, implying that primordial RNA pools could have used this strategy to avoid extinction.

Effects of Didymosphenia geminata massive growth on stream communities: Smaller organisms and simplified food web structure.

Science.gov (United States)

Ladrera, Rubén; Gomà, Joan; Prat, Narcís

2018-01-01

This study aims to contribute to the understanding of the impact of Didymosphenia geminata massive growths upon river ecosystem communities' composition and functioning. This is the first study to jointly consider the taxonomic composition and functional structure of diatom and macroinvertebrate assemblages in order to determine changes in community structure, and the food web alterations associated with this invasive alga. This study was carried out in the Lumbreras River (Ebro Basin, La Rioja, Northern Spain), which has been affected by a considerable massive growth of D. geminata since 2011. The study shows a profound alteration in both the river community composition and in the food web structure at the sites affected by the massive growth, which is primarily due to the alteration of the environmental conditions, thus demonstrating that D. geminata has an important role as an ecosystem engineer in the river. Thick filamentous mats impede the movement of large invertebrates-especially those that move and feed up on it-and favor small, opportunistic, herbivorous organisms, mainly chironomids, that are capable of moving between filaments and are aided by the absence of large trophic competitors and predators -prey release effect-. Only small predators, such as hydra, are capable of surviving in the new environment, as they are favored by the increase in chironomids, a source of food, and by the reduction in both their own predators and other midge predators -mesopredator release-. This change in the top-down control affects the diatom community, since chironomids may feed on large diatoms, increasing the proportion of small diatoms in the substrate. The survival of small and fast-growing pioneer diatoms is also favored by the mesh of filaments, which offers them a new habitat for colonization. Simultaneously, D. geminata causes a significant reduction in the number of diatoms with similar ecological requirements (those attached to the substrate). Overall, D

No association between the use of Bti for mosquito control and the dynamics of non-target aquatic invertebrates in French coastal and continental wetlands

International Nuclear Information System (INIS)

Lagadic, Laurent; Schäfer, Ralf B.; Roucaute, Marc; Szöcs, Eduard; Chouin, Sébastien; Maupeou, Jérôme de; Duchet, Claire

2016-01-01

The environmental safety of Bacillus thuringiensis subsp. israelensis (Bti) is still controversial, mainly because most of the previous field studies on its undesired effects were spatially limited and did not address the relationship between community similarity and application time and frequency. No general statement can therefore be drawn on the usage conditions of Bti that insure protection of non-target organisms. The present study was conducted in eight sites distributed over the main geographical sectors where mosquito control is implemented in mainland France and Corsica. Changes in non-target aquatic invertebrates were followed at elapsed time after repeated applications of two Bti formulations (VectoBac® WDG or 12AS) up to four consecutive years. We examined the influence of both larvicide treatments and environmental variables on community dynamics and dissimilarity between treated and control areas. As it can be argued that chironomids are the most vulnerable group of non-target invertebrates, we scrutinised potential Bti-related effects on the dynamics of their community. The use of VectoBac® WDG and 12AS in coastal and continental wetlands had no immediate or long-term detectable effect on the taxonomic structure and taxa abundance of non-target aquatic invertebrate communities, including chironomids. This applied to the main habitats where mosquito larvae occur, regardless of their geographic location. Flooding, whose frequency and duration depend on local meteorological and hydrological conditions, was identified as the main environmental driver of invertebrate community dynamics. Our findings add support to the environmental safety of currently available Bti formulations when following recommended application rates and best mosquito control practices. - Highlights: • Bti is used in a variety of continental and coastal wetlands against mosquito larvae. • Bti dosages recommended for mosquito control do not affect non-target invertebrates. �

No association between the use of Bti for mosquito control and the dynamics of non-target aquatic invertebrates in French coastal and continental wetlands

Energy Technology Data Exchange (ETDEWEB)

Lagadic, Laurent, E-mail: Laurent.Lagadic@rennes.inra.fr [INRA, UMR985 Écologie et Santé des Écosystèmes, Agrocampus Ouest, 65 rue de Saint Brieuc, F-35042 Rennes (France); Schäfer, Ralf B. [Quantitative Landscape Ecology, Institute for Environmental Sciences, University of Koblenz-Landau, Fortstraße 7, D-76829 Landau (Germany); Roucaute, Marc [INRA, UMR985 Écologie et Santé des Écosystèmes, Agrocampus Ouest, 65 rue de Saint Brieuc, F-35042 Rennes (France); Szöcs, Eduard [Quantitative Landscape Ecology, Institute for Environmental Sciences, University of Koblenz-Landau, Fortstraße 7, D-76829 Landau (Germany); Chouin, Sébastien; Maupeou, Jérôme de [Etablissement Interdépartemental pour la Démoustication du Littoral Atlantique, 1 rue Toufaire, F-17300 Rochefort-sur-Mer (France); Duchet, Claire [Entente Interdépartementale pour la Démoustication du Littoral Méditerranéen, 165 avenue Paul-Rimbaud, F-34184 Montpellier (France); and others

2016-05-15

The environmental safety of Bacillus thuringiensis subsp. israelensis (Bti) is still controversial, mainly because most of the previous field studies on its undesired effects were spatially limited and did not address the relationship between community similarity and application time and frequency. No general statement can therefore be drawn on the usage conditions of Bti that insure protection of non-target organisms. The present study was conducted in eight sites distributed over the main geographical sectors where mosquito control is implemented in mainland France and Corsica. Changes in non-target aquatic invertebrates were followed at elapsed time after repeated applications of two Bti formulations (VectoBac® WDG or 12AS) up to four consecutive years. We examined the influence of both larvicide treatments and environmental variables on community dynamics and dissimilarity between treated and control areas. As it can be argued that chironomids are the most vulnerable group of non-target invertebrates, we scrutinised potential Bti-related effects on the dynamics of their community. The use of VectoBac® WDG and 12AS in coastal and continental wetlands had no immediate or long-term detectable effect on the taxonomic structure and taxa abundance of non-target aquatic invertebrate communities, including chironomids. This applied to the main habitats where mosquito larvae occur, regardless of their geographic location. Flooding, whose frequency and duration depend on local meteorological and hydrological conditions, was identified as the main environmental driver of invertebrate community dynamics. Our findings add support to the environmental safety of currently available Bti formulations when following recommended application rates and best mosquito control practices. - Highlights: • Bti is used in a variety of continental and coastal wetlands against mosquito larvae. • Bti dosages recommended for mosquito control do not affect non-target invertebrates. �

A comparison of two methods for prediction of response and rates of inbreeding in selected populations with the results obtained in two selection experiments

Directory of Open Access Journals (Sweden)

Verrier Etienne

2005-05-01

Full Text Available Abstract Selection programmes are mainly concerned with increasing genetic gain. However, short-term progress should not be obtained at the expense of the within-population genetic variability. Different prediction models for the evolution within a small population of the genetic mean of a selected trait, its genetic variance and its inbreeding have been developed but have mainly been validated through Monte Carlo simulation studies. The purpose of this study was to compare theoretical predictions to experimental results. Two deterministic methods were considered, both grounded on a polygenic additive model. Differences between theoretical predictions and experimental results arise from differences between the true and the assumed genetic model, and from mathematical simplifications applied in the prediction methods. Two sets of experimental lines of chickens were used in this study: the Dutch lines undergoing true truncation mass selection, the other lines (French undergoing mass selection with a restriction on the representation of the different families. This study confirmed, on an experimental basis, that modelling is an efficient approach to make useful predictions of the evolution of selected populations although the basic assumptions considered in the models (polygenic additive model, normality of the distribution, base population at the equilibrium, etc. are not met in reality. The two deterministic methods compared yielded results that were close to those observed in real data, especially when the selection scheme followed the rules of strict mass selection: for instance, both predictions overestimated the genetic gain in the French experiment, whereas both predictions were close to the observed values in the Dutch experiment.

The genetic composition of populations of cynomolgus macaques (Macaca fascicularis) used in biomedical research.

Science.gov (United States)

Kanthaswamy, S; Ng, J; Satkoski Trask, J; George, D A; Kou, A J; Hoffman, L N; Doherty, T B; Houghton, P; Smith, D G

2013-06-01

The genetic composition of cynomolgus macaques used in biomedical research is not as well-characterized as that of rhesus macaques. Populations of cynomolgus macaques from Sumatra, Corregidor, Mauritius, Singapore, Cambodia, and Zamboanga were analyzed using 24 STRs. The Sumatran and Cambodian populations exhibited the highest allelic diversity, while the Mauritian population exhibited the lowest. Sumatran cynomolgus macaques were the most genetically similar to all others, consistent with an Indonesian origin of the species. The high diversity among Cambodian animals may result from interbreeding with rhesus macaques. The Philippine and Mauritian samples were the most divergent from other populations, the former due to separation from the Sunda Shelf by deepwater and the latter due to anthropogenic translocation and extreme founder effects. Investigators should verify their research subjects' origin, ancestry, and pedigree to minimize risks to biomedical experimentation from genetic variance stemming from close kinship and mixed ancestry as these can obscure treatment effects. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

An obligatory bacterial mutualism in a multi-drug environment exhibits strong oscillatory population dynamics

Science.gov (United States)

Conwill, Arolyn; Yurtsev, Eugene; Gore, Jeff

2014-03-01

A common mechanism of antibiotic resistance in bacteria involves the production of an enzyme that inactivates the antibiotic. By inactivating the antibiotic, resistant cells can protect other cells in the population that would otherwise be sensitive to the drug. In a multidrug environment, an obligatory mutualism arises because populations of different strains rely on each other to breakdown antibiotics in the environment. Here, we experimentally track the population dynamics of two E. coli strains in the presence of two different antibiotics: ampicillin and chloramphenicol. Together the strains are able to grow in antibiotic concentrations that inhibit growth of either one of the strains alone. Although mutualisms are often thought to stabilize population dynamics, we observe strong oscillatory dynamics even when there is long-term coexistence between the two strains. We expect that our results will provide insight into the evolution of antibiotic resistance and, more generally, the evolutionary origin of phenotypic diversity, cooperation, and ecological stability.

Population and population policy in Pakistan.

Science.gov (United States)

Mauldin, W P

1963-02-01

Pakistan is a divided country with different religious groups represented. Since independence in 1941, the Muslim population has increased more rapidly than the Hindu population, the West Pakistan population more rapidly and steadily than the East Pakistan population. In the late 1950s the Pakistan government initiated a family planning program. The program has trained medical and paramedical personnel in family planning, added family planning services to existing medical centers, planned for a National Research Institute of Family Planning, employed mobile units to reach outlying areas, conducted limited clinical studies on some contraceptives, and used mass media advertising. Only India and Japan are doing more with government-sponsored family planning. A weak organizational structure and an inadequate number of trained personnel are the main weakness of the program. It is too early to assess the success of the program. A 10-point reduction in annual birth rates will be considered successful.

Grain yield of corn at different population densities and intercropped with forages

Directory of Open Access Journals (Sweden)

José M. do Nascimento

2015-12-01

Full Text Available ABSTRACT The no-tillage system optimizes agricultural areas, maintaining the supply of straw and promoting crop rotation and soil conservation. The aim of the present study was to evaluate sowing quality and grain yield of corn intercropped with three forage species of the Urochloa genus associated with two corn population densities. The experiment was conducted at the São Paulo State University (UNESP, in Jaboticabal-SP, Brazil. The experimental design was randomized blocks in a 2 x 3 factorial scheme with four replicates. The treatments consisted of two corn densities (55,000 and 75,000 plants ha-1 intercropped with three forages (Urochloa brizantha, Urochloa decumbens and Urochloa ruziziensis sown between rows of corn in the V4 stage. The following corn variables were analysed: mean number of days for emergence, longitudinal distribution, grain yield, initial population and final population. There were differences between corn populations (p < 0.1 and the intercropping of corn with the species U. brizantha and U. ruziziensis promoted the best results, which permitted concluding that the cultivation of corn at the population density of 75,000 plants ha-1 intercropped U. brizantha and U. ruziziensis promoted better sowing quality and, consequently, higher grain yields.

An experimental overview of the seismic cycle

Science.gov (United States)

Spagnuolo, E.; Violay, M.; Passelegue, F. X.; Nielsen, S. B.; Di Toro, G.

2017-12-01

Earthquake nucleation is the last stage of the inter-seismic cycle where the fault surface evolves through the interplay of friction, healing, stress perturbations and strain events. Slip stability under rate-and state friction has been extensively discussed in terms of loading point velocity and equivalent fault stiffness, but fault evolution towards seismic runaway under complex loading histories (e.g. slow variations of tectonic stress, stress transfer from impulsive nearby seismic events) is not yet fully investigated. Nevertheless, the short term earthquake forecasting is based precisely on a relation between seismic productivity and loading history which remains up to date still largely unresolved. To this end we propose a novel experimental approach which avails of a closed loop control of the shear stress, a nominally infinite equivalent slip and transducers for continuous monitoring of acoustic emissions. This experimental simulation allows us to study the stress dependency and temporal evolution of spontaneous slip events occurring on a pre-existing fault subjected to different loading histories. The experimental fault has an initial roughness which mimic a population of randomly distributed asperities, which here are used as a proxy for patches which are either far or close to failure on an extended fault. Our observations suggest that the increase of shear stress may trigger either spontaneous slow slip (creep) or short-lived stick-slip bursts, eventually leading to a fast slip instability (seismic runaway) when slip rates are larger than a few cm/s. The event type and the slip rate are regulated at first order by the background shear stress whereas the ultimate strength of the entire fault is dominated by the number of asperities close to failure under a stress step. The extrapolation of these results to natural conditions might explain the plethora of events that often characterize seismic sequences. Nonetheless this experimental approach helps the

Optimal exploitation of spatially distributed trophic resources and population stability

Science.gov (United States)

Basset, A.; Fedele, M.; DeAngelis, D.L.

2002-01-01

The relationships between optimal foraging of individuals and population stability are addressed by testing, with a spatially explicit model, the effect of patch departure behaviour on individual energetics and population stability. A factorial experimental design was used to analyse the relevance of the behavioural factor in relation to three factors that are known to affect individual energetics; i.e. resource growth rate (RGR), assimilation efficiency (AE), and body size of individuals. The factorial combination of these factors produced 432 cases, and 1000 replicate simulations were run for each case. Net energy intake rates of the modelled consumers increased with increasing RGR, consumer AE, and consumer body size, as expected. Moreover, through their patch departure behaviour, by selecting the resource level at which they departed from the patch, individuals managed to substantially increase their net energy intake rates. Population stability was also affected by the behavioural factors and by the other factors, but with highly non-linear responses. Whenever resources were limiting for the consumers because of low RGR, large individual body size or low AE, population density at the equilibrium was directly related to the patch departure behaviour; on the other hand, optimal patch departure behaviour, which maximised the net energy intake at the individual level, had a negative influence on population stability whenever resource availability was high for the consumers. The consumer growth rate (r) and numerical dynamics, as well as the spatial and temporal fluctuations of resource density, which were the proximate causes of population stability or instability, were affected by the behavioural factor as strongly or even more strongly than by the others factors considered here. Therefore, patch departure behaviour can act as a feedback control of individual energetics, allowing consumers to optimise a potential trade-off between short-term individual fitness

Epidemiology Characteristics of Constipation for General Population, Pediatric Population, and Elderly Population in China

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Huikuan Chu

2014-01-01

Full Text Available Objective. To acquire more data about the epidemiologic characteristics of constipation in different kinds of populations in China. Methods. Using “constipation” and “China” as search terms; relevant papers were searched from January 1995 to April 2014. Data on prevalence, gender, diagnostic criteria, geographical area, educational class, age, race, and physician visit results were extracted and analyzed. Results. 36 trials were included. Prevalence rates of constipation in elderly population (18.1% and pediatric population (18.8% were significantly higher than that in general population (8.2%. Prevalence of constipation defined by non-Rome criteria was higher than that by Rome criteria in general population. Prevalence rates of constipation were different for different geographical area. People with less education were predisposed to constipation. In pediatric population, prevalence of constipation was the lowest in children aged 2–6 years. Prevalence of constipation in ethnic minorities was higher than that in Han people. People with constipation were predisposed to FD, haemorrhoid, and GERD. Only 22.2% patients seek medical advice in general population. Conclusions. In China, prevalence of constipation was lower compared with most of other countries. The factors including female gender, diagnostic criteria, geographical area, age, educational class, and race seemed to have major effects on prevalence of constipation.

Short-term effects of avian predation variation on population size and local survival of the multimammate rat, Mastomys natalensis (Rodentia, Muridae)

DEFF Research Database (Denmark)

Gulck, T. van; Stocks, R.; Verhagen, Ron

1998-01-01

The influence of avian predation on population size and local survival of Mastomys natalensis rats in Tanzania was studied in a capture-recapture study over a six month period on experimental fields with decreased, controlled and increased predation pressure. Bird observations indicated that the ......The influence of avian predation on population size and local survival of Mastomys natalensis rats in Tanzania was studied in a capture-recapture study over a six month period on experimental fields with decreased, controlled and increased predation pressure. Bird observations indicated...... that the placement of perches increased local hunting activity of at least the Black Shouldered Kite but there were no obvious effects on rodent population size or survival. In a single field where avian predation was prevented by covering the field with a net, an increase in survival was observed. The opposite...

Wetland use and feeding by lesser scaup during spring migration across the upper Midwest, USA

Science.gov (United States)

Anteau, M.J.; Afton, A.D.

2009-01-01

Low food availability and forage quality and concomitant decreased lipid reserves of lesser scaup (Aythya affinis; hereafter scaup) during spring migration in the upper Midwest may partially explain reductions in the continental population of scaup. In springs 20042005, we examined wetland use and feeding activity of scaup on 356 randomly-selected wetlands within 6 regions in Iowa, Minnesota, and North Dakota. We examined wetland characteristics that favor high scaup use in 286 of these wetlands. We found that probabilities of wetland use and feeding by scaup increased with turbidity up to 45 and 30 NTU, respectively, but then declined at higher turbidity levels. Wetland use was positively correlated with size of open-water zone and amphipod densities, but was not correlated with chironomid densities. Feeding increased with amphipod density up to 26 m-3 and then declined at higher amphipod densities; scaup seemingly forage most efficiently at amphipod densities above 26 m -3. Wetland use was higher in North Dakota than in southern Minnesota and Iowa. Our results indicate that effective wetland restoration efforts to benefit scaup require maintaining abundant populations of amphipods (generally near 26 m-3 landscape geometric mean) in wetlands with large (> 500 m diameter) open-water zones throughout the upper Midwest, but especially within Iowa and southern Minnesota.

Phenotypic equilibrium as probabilistic convergence in multi-phenotype cell population dynamics.

Directory of Open Access Journals (Sweden)

Da-Quan Jiang

Full Text Available We consider the cell population dynamics with n different phenotypes. Both the Markovian branching process model (stochastic model and the ordinary differential equation (ODE system model (deterministic model are presented, and exploited to investigate the dynamics of the phenotypic proportions. We will prove that in both models, these proportions will tend to constants regardless of initial population states ("phenotypic equilibrium" under weak conditions, which explains the experimental phenomenon in Gupta et al.'s paper. We also prove that Gupta et al.'s explanation is the ODE model under a special assumption. As an application, we will give sufficient and necessary conditions under which the proportion of one phenotype tends to 0 (die out or 1 (dominate. We also extend our results to non-Markovian cases.

Epistasis can accelerate adaptive diversification in haploid asexual populations.

Science.gov (United States)

Griswold, Cortland K

2015-03-07

A fundamental goal of the biological sciences is to determine processes that facilitate the evolution of diversity. These processes can be separated into ecological, physiological, developmental and genetic. An ecological process that facilitates diversification is frequency-dependent selection caused by competition. Models of frequency-dependent adaptive diversification have generally assumed a genetic basis of phenotype that is non-epistatic. Here, we present a model that indicates diversification is accelerated by an epistatic basis of phenotype in combination with a competition model that invokes frequency-dependent selection. Our model makes use of a genealogical model of epistasis and insights into the effects of balancing selection on the genealogical structure of a population to understand how epistasis can facilitate diversification. The finding that epistasis facilitates diversification may be informative with respect to empirical results that indicate an epistatic basis of phenotype in experimental bacterial populations that experienced adaptive diversification. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Estimation of exposure to furan in the Spanish population.

Science.gov (United States)

Mesías, Marta; Guerra-Hernández, Eduardo; García-Villanova, Belén

2012-02-01

The presence of furan in foods has received recent attention because of its association with harmful effects to human health. This compound, which is originated as a consequence of thermal treatment, is mainly found in canned, jarred, toasted and fried foods. The aim of this study was to estimate the exposure to furan in the Spanish population and to study the evolution of furan content in the main categories of foods in recent years, taking into account changes in dietary patterns. With respect to exposure to furan in the Spanish population from 2001 to 2009, no large differences were found. The maximum furan exposure recorded in this study (1.95 μg/kg bw/day) is lower than the 'no observable adverse effect level' of 0.08 mg/kg bw/day determined in the studies of experimental animals, and is close to the reported acceptable daily intake of 2 μg/kg bw/day.

Nutritional Correlates of Koala Persistence in a Low-Density Population

Science.gov (United States)

Stalenberg, Eleanor; Wallis, Ian R.; Cunningham, Ross B.; Allen, Chris; Foley, William J.

2014-01-01

It is widely postulated that nutritional factors drive bottom-up, resource-based patterns in herbivore ecology and distribution. There is, however, much controversy over the roles of different plant constituents and how these influence individual herbivores and herbivore populations. The density of koala (Phascolarctos cinereus) populations varies widely and many attribute population trends to variation in the nutritional quality of the eucalypt leaves of their diet, but there is little evidence to support this hypothesis. We used a nested design that involved sampling of trees at two spatial scales to investigate how leaf chemistry influences free-living koalas from a low-density population in south east New South Wales, Australia. Using koala faecal pellets as a proxy for koala visitation to trees, we found an interaction between toxins and nutrients in leaves at a small spatial scale, whereby koalas preferred trees with leaves of higher concentrations of available nitrogen but lower concentrations of sideroxylonals (secondary metabolites found exclusively in eucalypts) compared to neighbouring trees of the same species. We argue that taxonomic and phenotypic diversity is likely to be important when foraging in habitats of low nutritional quality in providing diet choice to tradeoff nutrients and toxins and minimise movement costs. Our findings suggest that immediate nutritional concerns are an important priority of folivores in low-quality habitats and imply that nutritional limitations play an important role in constraining folivore populations. We show that, with a careful experimental design, it is possible to make inferences about populations of herbivores that exist at extremely low densities and thus achieve a better understanding about how plant composition influences herbivore ecology and persistence. PMID:25470599

Nutritional correlates of koala persistence in a low-density population.

Directory of Open Access Journals (Sweden)

Eleanor Stalenberg

Full Text Available It is widely postulated that nutritional factors drive bottom-up, resource-based patterns in herbivore ecology and distribution. There is, however, much controversy over the roles of different plant constituents and how these influence individual herbivores and herbivore populations. The density of koala (Phascolarctos cinereus populations varies widely and many attribute population trends to variation in the nutritional quality of the eucalypt leaves of their diet, but there is little evidence to support this hypothesis. We used a nested design that involved sampling of trees at two spatial scales to investigate how leaf chemistry influences free-living koalas from a low-density population in south east New South Wales, Australia. Using koala faecal pellets as a proxy for koala visitation to trees, we found an interaction between toxins and nutrients in leaves at a small spatial scale, whereby koalas preferred trees with leaves of higher concentrations of available nitrogen but lower concentrations of sideroxylonals (secondary metabolites found exclusively in eucalypts compared to neighbouring trees of the same species. We argue that taxonomic and phenotypic diversity is likely to be important when foraging in habitats of low nutritional quality in providing diet choice to tradeoff nutrients and toxins and minimise movement costs. Our findings suggest that immediate nutritional concerns are an important priority of folivores in low-quality habitats and imply that nutritional limitations play an important role in constraining folivore populations. We show that, with a careful experimental design, it is possible to make inferences about populations of herbivores that exist at extremely low densities and thus achieve a better understanding about how plant composition influences herbivore ecology and persistence.

Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space.

Science.gov (United States)

Feng, Lei; Jeon, Tina; Yu, Qiaowen; Ouyang, Minhui; Peng, Qinmu; Mishra, Virendra; Pletikos, Mihovil; Sestan, Nenad; Miller, Michael I; Mori, Susumu; Hsiao, Steven; Liu, Shuwei; Huang, Hao

2017-12-01

Animal models of the rhesus macaque (Macaca mulatta), the most widely used nonhuman primate, have been irreplaceable in neurobiological studies. However, a population-averaged macaque brain diffusion tensor imaging (DTI) atlas, including comprehensive gray and white matter labeling as well as bony and facial landmarks guiding invasive experimental procedures, is not available. The macaque white matter tract pathways and microstructures have been rarely recorded. Here, we established a population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space incorporating bony and facial landmarks, and delineated microstructures and three-dimensional pathways of major white matter tracts in vivo MRI/DTI and ex vivo (postmortem) DTI of ten rhesus macaque brains were acquired. Single-subject macaque brain DTI template was obtained by transforming the postmortem high-resolution DTI data into in vivo space. Ex vivo DTI of ten macaque brains was then averaged in the in vivo single-subject template space to generate population-averaged macaque brain DTI atlas. The white matter tracts were traced with DTI-based tractography. One hundred and eighteen neural structures including all cortical gyri, white matter tracts and subcortical nuclei, were labeled manually on population-averaged DTI-derived maps. The in vivo microstructural metrics of fractional anisotropy, axial, radial and mean diffusivity of the traced white matter tracts were measured. Population-averaged digital atlas integrated into in vivo space can be used to label the experimental macaque brain automatically. Bony and facial landmarks will be available for guiding invasive procedures. The DTI metric measurements offer unique insights into heterogeneous microstructural profiles of different white matter tracts.

Imaginary populations

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A. Martínez–Abraín

2010-01-01

Full Text Available A few years ago, Camus & Lima (2002 wrote an essay to stimulate ecologists to think about how we define and use a fundamental concept in ecology: the population. They concluded, concurring with Berryman (2002, that a population is "a group of individuals of the same species that live together in an area of sufficient size to permit normal dispersal and/or migration behaviour and in which population changes are largely the results of birth and death processes". They pointed out that ecologists often forget "to acknowledge that many study units are neither natural nor even units in terms of constituting a population system", and hence claimed that we "require much more accuracy than in past decades in order to be more effective to characterize populations and predict their behaviour". They stated that this is especially necessary "in disciplines such as conservation biology or resource pest management, to avoid reaching wrong conclusions or making inappropriate decisions". As a population ecologist and conservation biologist I totally agree with these authors and, like them, I be¬lieve that greater precision and care is needed in the use and definition of ecological terms. The point I wish to stress here is that we ecologists tend to forget that when we use statistical tools to infer results from our sample to a population we work with what statisticians term "imaginary", "hypothetical" or "potential" popula¬tions. As Zar (1999 states, if our sample data consist of 40 measurements of growth rate in guinea pigs "the population about which conclusions might be drawn is the growth rates of all the guinea pigs that conceivably might have been administered the same food supplement under identical conditions". Such a population does not really exist, and hence it is considered a hypothetical or imaginary population. Compare that definition with the population concept that would be in our minds when performing such measurements. We would probably

Mapping of imprinted quantitative trait loci using immortalized F2 populations.

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Yongxian Wen

Full Text Available Mapping of imprinted quantitative trait loci (iQTLs is helpful for understanding the effects of genomic imprinting on complex traits in animals and plants. At present, the experimental designs and corresponding statistical methods having been proposed for iQTL mapping are all based on temporary populations including F2 and BC1, which can be used only once and suffer some other shortcomings respectively. In this paper, we propose a framework for iQTL mapping, including methods of interval mapping (IM and composite interval mapping (CIM based on conventional low-density genetic maps and point mapping (PM and composite point mapping (CPM based on ultrahigh-density genetic maps, using an immortalized F2 (imF2 population generated by random crosses between recombinant inbred lines or doubled haploid lines. We demonstrate by simulations that imF2 populations are very desirable and the proposed statistical methods (especially CIM and CPM are very powerful for iQTL mapping, with which the imprinting effects as well as the additive and dominance effects of iQTLs can be unbiasedly estimated.

Investigations for decision making on an old tailing pond of a former experimental metallurgical plant

International Nuclear Information System (INIS)

Razikov, Z.A.; Pavljuk, L.M.; Bezzubov, N.I.

2002-01-01

Investigations are described on an abandoned tailing pond of a former experimental metallurgical plant which operated during the period 1945-1950. The aim of these investigations was to explore radiological hazards arising from the tailing pond for the population and to obtain data for decision making on redeployment or dumping of the pond. Methods used, results obtained and conclusions drawn are outlined. (author)

Population and particle decay of isobaric analog states in medium heavy nuclei

International Nuclear Information System (INIS)

Gales, S.

1980-05-01

The systematic features of proton stripping and neutron pick-up reactions to Isobaric Analog States in medium heavy nuclei are presented. The ( 3 He,d) reaction investigated at high incident energy is shown to selectively excite high-spin particle-analog states. Similarly the ( 3 He,α) reaction populates hole-analog states. The recent results related to such highly excited states in a wide range of nuclei ( 48 Ca to 208 Pb) are discussed in the framework of the DWBA theory of direct reactions with special emphasis on the treatment of unbound proton states or deeply-bound neutron hole states. The particle decay of Isobaric Analog States are investigated using the ( 3 He,d p) and ( 3 He, α p) sequential processes. The experimental method developed at Orsay (0 0 detection) for particle-particle angular correlations is presented. The advantage and the limits of such approach are illustrated by typical examples of particle decays: core-excited states, neutron particle-hole multiplets and the first observation of the proton emission of hole-analog levels. In conclusion new experimental approaches such as asymmetry measurements for analog states observed in transfer reactions or possible population of double analog states in heavy nuclei are discussed

Population dynamics of Ascaris suum in trickle-infected pigs.

Science.gov (United States)

Nejsum, Peter; Thamsborg, Stig M; Petersen, Heidi H; Kringel, Helene; Fredholm, Merete; Roepstorff, Allan

2009-10-01

The population dynamics of Ascaris suum was studied by long-term exposure of pigs to infective eggs. The pigs were experimentally inoculated with 25 A. suum eggs/kg/day, and 7, 8, and 8 pigs were necropsied at weeks 4, 8, and 14 postinoculation (PI), respectively. Despite the fact that the pigs were continuously reinfected, dramatic reductions in numbers of liver lesions (white spots) and migrating lung larvae were observed as a function of time. However, even at the end of the study, a few larvae were able to complete migration, but these larvae seemed unable to mature in the small intestine. Thus, the adult worm population seemed to consist of worms from the first part of the exposure period. The noticeable decrease in number of white spots suggests that the level of exposure is not reflected in the number of white spots in the late phase of a continuous infection. The serum levels of A. suum L3-specific IgG1 and IgA were significantly elevated by week 4 PI, after which the antibody levels declined. The population dynamics and parasite regulating mechanisms are discussed for A. suum in pigs as well as for the closely related species A. lumbricoides in humans.

Recording human cortical population spikes non-invasively--An EEG tutorial.

Science.gov (United States)

Waterstraat, Gunnar; Fedele, Tommaso; Burghoff, Martin; Scheer, Hans-Jürgen; Curio, Gabriel

2015-07-30

Non-invasively recorded somatosensory high-frequency oscillations (sHFOs) evoked by electric nerve stimulation are markers of human cortical population spikes. Previously, their analysis was based on massive averaging of EEG responses. Advanced neurotechnology and optimized off-line analysis can enhance the signal-to-noise ratio of sHFOs, eventually enabling single-trial analysis. The rationale for developing dedicated low-noise EEG technology for sHFOs is unfolded. Detailed recording procedures and tailored analysis principles are explained step-by-step. Source codes in Matlab and Python are provided as supplementary material online. Combining synergistic hardware and analysis improvements, evoked sHFOs at around 600 Hz ('σ-bursts') can be studied in single-trials. Additionally, optimized spatial filters increase the signal-to-noise ratio of components at about 1 kHz ('κ-bursts') enabling their detection in non-invasive surface EEG. sHFOs offer a unique possibility to record evoked human cortical population spikes non-invasively. The experimental approaches and algorithms presented here enable also non-specialized EEG laboratories to combine measurements of conventional low-frequency EEG with the analysis of concomitant cortical population spike responses. Copyright © 2014 Elsevier B.V. All rights reserved.

Herbivory by an introduced Asian weevil negatively affects population growth of an invasive Brazilian shrub in Florida.

Science.gov (United States)

Stricker, Kerry Bohl; Stiling, Peter

2012-08-01

The enemy release hypothesis (ERH) is often cited to explain why some plants successfully invade natural communities while others do not. This hypothesis maintains that plant populations are regulated by coevolved enemies in their native range but are relieved of this pressure where their enemies have not been co-introduced. Some studies have shown that invasive plants sustain lower levels of herbivore damage when compared to native species, but how damage affects fitness and population dynamics remains unclear. We used a system of co-occurring native and invasive Eugenia congeners in south Florida (USA) to experimentally test the ERH, addressing deficiencies in our understanding of the role of natural enemies in plant invasion at the population level. Insecticide was used to experimentally exclude insect herbivores from invasive Eugenia uniflora and its native co-occurring congeners in the field for two years. Herbivore damage, plant growth, survival, and population growth rates for the three species were then compared for control and insecticide-treated plants. Our results contradict the ERH, indicating that E. uniflora sustains more herbivore damage than its native congeners and that this damage negatively impacts stem height, survival, and population growth. In addition, most damage to E. uniflora, a native of Brazil, is carried out by Myllocerus undatus, a recently introduced weevil from Sri Lanka, and M. undatus attacks a significantly greater proportion of E. uniflora leaves than those of its native congeners. This interaction is particularly interesting because M. undatus and E. uniflora share no coevolutionary history, having arisen on two separate continents and come into contact on a third. Our study is the first to document negative population-level effects for an invasive plant as a result of the introduction of a novel herbivore. Such inhibitory interactions are likely to become more prevalent as suites of previously noninteracting species continue to