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Sample records for eudorylas schreiteri shannon

  1. First record of Eudorylas schreiteri (Shannon) (Diptera: Pipunculidae) as a parasitoid of the corn leafhopper (Hemiptera: Cicadellidae) in Argentina, with a table of pipunculid-host associations in the neo tropical region

    International Nuclear Information System (INIS)

    Virla, Eduardo G.; Rafael, Jose A.

    2009-01-01

    The big-headed fly Eudorylas schreiteri (Shannon) is recorded for the first time as an endoparasitoid of the corn leafhopper Dalbulus maidis (DeLong and Wolcott) in Northern Argentina. A table of known Neotropical pipunculid-host associations is presented. (author)

  2. First record of Eudorylas schreiteri (Shannon) (Diptera: Pipunculidae) as a parasitoid of the corn leafhopper (Hemiptera: Cicadellidae) in Argentina, with a table of pipunculid-host associations in the neo tropical region

    Energy Technology Data Exchange (ETDEWEB)

    Virla, Eduardo G. [PROIMI-Biotecnologia, Tucuman (Argentina). Div. de Control Biologico]. E-mail: evirla@hotmail.com; Moya-Raygoza, Gustavo [Universidad de Guadalajara, Jalisco (Mexico). Centro Universitario de Ciencias Biologicas y Agropecuarias (CUCBA)]. E-mail: gmoya@cucba.udg.mx; Rafael, Jose A. [Instituto Nacional de Pesquisas da Amazonia (INPA), Manaus, AM (Brazil)]. E-mail: jarafael@inpa.gov.br

    2009-01-15

    The big-headed fly Eudorylas schreiteri (Shannon) is recorded for the first time as an endoparasitoid of the corn leafhopper Dalbulus maidis (DeLong and Wolcott) in Northern Argentina. A table of known Neotropical pipunculid-host associations is presented. (author)

  3. Dynamic Shannon Coding

    OpenAIRE

    Gagie, Travis

    2005-01-01

    We present a new algorithm for dynamic prefix-free coding, based on Shannon coding. We give a simple analysis and prove a better upper bound on the length of the encoding produced than the corresponding bound for dynamic Huffman coding. We show how our algorithm can be modified for efficient length-restricted coding, alphabetic coding and coding with unequal letter costs.

  4. Infinite Shannon entropy

    International Nuclear Information System (INIS)

    Baccetti, Valentina; Visser, Matt

    2013-01-01

    Even if a probability distribution is properly normalizable, its associated Shannon (or von Neumann) entropy can easily be infinite. We carefully analyze conditions under which this phenomenon can occur. Roughly speaking, this happens when arbitrarily small amounts of probability are dispersed into an infinite number of states; we shall quantify this observation and make it precise. We develop several particularly simple, elementary, and useful bounds, and also provide some asymptotic estimates, leading to necessary and sufficient conditions for the occurrence of infinite Shannon entropy. We go to some effort to keep technical computations as simple and conceptually clear as possible. In particular, we shall see that large entropies cannot be localized in state space; large entropies can only be supported on an exponentially large number of states. We are for the time being interested in single-channel Shannon entropy in the information theoretic sense, not entropy in a stochastic field theory or quantum field theory defined over some configuration space, on the grounds that this simple problem is a necessary precursor to understanding infinite entropy in a field theoretic context. (paper)

  5. Regaining Weaver and Shannon

    Directory of Open Access Journals (Sweden)

    Gary Genosko

    2008-01-01

    Full Text Available My claim is that communication considered from the standpoint of how it is modeled must not only reckon with Claude E. Shannon and Warren Weaver but regain their pioneering efforts in new ways. I want to regain two neglected features. I signal these ends by simply reversing the order in which their names commonly appear.First, the recontextualization of Shannon and Weaver requires an investigation of the technocultural scene of information ‘handling’ embedded in their groundbreaking postwar labours; not incidentally, it was Harold D. Lasswell, whose work in the 1940s is often linked with Shannon and Weaver’s, who made a point of distinguishing between those who affect the content of messages (controllers as opposed to those who handle without modifying (other than accidentally such messages. Although it will not be possible to maintain such a hard and fast distinction that ignores scenes of encoding and decoding, Lasswell’s (1964: 42-3 examples of handlers include key figures such as ‘dispatchers, linemen, and messengers connected with telegraphic communication’ whose activities will prove to be important for my reading of the Shannon and Weaver essays. Telegraphy and its occupational cultures are the technosocial scenes informing the Shannon and Weaver model.Second, I will pay special attention to Weaver’s contribution, despite a tendency to erase him altogether by means of a general scientific habit of listing the main author first and then attributing authorship only to the first name on the list (although this differs within scientific disciplines, particularly in the health field where the name of the last author is in the lead, so to speak. I begin with a displacement of hierarchy and authority. I am inclined to simply state for those who, in the manner of Sherlock Holmes, ‘know my method’, that I focus my attention on the less well-known half of thinking pairs – on Roger Caillois instead of Georges Bataille, on F

  6. Einstein, Podolsky, Rosen, and Shannon

    OpenAIRE

    Peres, Asher

    2003-01-01

    The EPR paradox (1935) is reexamined in the light of Shannon's information theory (1948). The EPR argument did not take into account that the observers' information was localized, like any other physical object.

  7. Fractional Calculus and Shannon Wavelet

    Directory of Open Access Journals (Sweden)

    Carlo Cattani

    2012-01-01

    Full Text Available An explicit analytical formula for the any order fractional derivative of Shannon wavelet is given as wavelet series based on connection coefficients. So that for any 2(ℝ function, reconstructed by Shannon wavelets, we can easily define its fractional derivative. The approximation error is explicitly computed, and the wavelet series is compared with Grünwald fractional derivative by focusing on the many advantages of the wavelet method, in terms of rate of convergence.

  8. Shannon's information is not entropy

    International Nuclear Information System (INIS)

    Schiffer, M.

    1990-01-01

    In this letter we clear up the long-standing misidentification of Shannon's Information with Entropy. We show that Information, in contrast to Entropy, is not invariant under unitary transformations and that these quantities are only equivalent for representations consisting of Hamiltonian eigenstates. We illustrate this fact through a toy system consisting of a harmonic oscillator in a coherent state. It is further proved that the representations which maximize the information are those which are energy-eigenstates. This fact sets the entropy as an upper bound for Shannon's Information. (author)

  9. Shannon entropy and particle decays

    Science.gov (United States)

    Carrasco Millán, Pedro; García-Ferrero, M. Ángeles; Llanes-Estrada, Felipe J.; Porras Riojano, Ana; Sánchez García, Esteban M.

    2018-05-01

    We deploy Shannon's information entropy to the distribution of branching fractions in a particle decay. This serves to quantify how important a given new reported decay channel is, from the point of view of the information that it adds to the already known ones. Because the entropy is additive, one can subdivide the set of channels and discuss, for example, how much information the discovery of a new decay branching would add; or subdivide the decay distribution down to the level of individual quantum states (which can be quickly counted by the phase space). We illustrate the concept with some examples of experimentally known particle decay distributions.

  10. From Shannon to Quantum Information Science

    Indian Academy of Sciences (India)

    dramatically improve the acquisition, transmission, and processing of .... number of dimensions, and has been applied to several walks of life ... The key idea of Shannon is to model communication as .... Let m be the smallest integer not less.

  11. Regeneration limit of classical Shannon capacity

    Science.gov (United States)

    Sorokina, M. A.; Turitsyn, S. K.

    2014-05-01

    Since Shannon derived the seminal formula for the capacity of the additive linear white Gaussian noise channel, it has commonly been interpreted as the ultimate limit of error-free information transmission rate. However, the capacity above the corresponding linear channel limit can be achieved when noise is suppressed using nonlinear elements; that is, the regenerative function not available in linear systems. Regeneration is a fundamental concept that extends from biology to optical communications. All-optical regeneration of coherent signal has attracted particular attention. Surprisingly, the quantitative impact of regeneration on the Shannon capacity has remained unstudied. Here we propose a new method of designing regenerative transmission systems with capacity that is higher than the corresponding linear channel, and illustrate it by proposing application of the Fourier transform for efficient regeneration of multilevel multidimensional signals. The regenerative Shannon limit—the upper bound of regeneration efficiency—is derived.

  12. Vallor, Shannon. Technology and the Virtues

    DEFF Research Database (Denmark)

    Friis, Jan Kyrre Berg

    2017-01-01

    Technology and the Virtues is the first analysis of emerging technologies and the role of virtue ethics in an attempt to make us understand the urgency of immediate moral transformation. It is written by phenomenologist and philosopher Shannon Vallor, a William J. Rewak Professor at Santa Clara...

  13. 2. From Shannon To Quantum Information Science

    Indian Academy of Sciences (India)

    ... Journals; Resonance – Journal of Science Education; Volume 7; Issue 5. From Shannon to Quantum Information Science - Mixed States. Rajiah Simon. General Article Volume 7 Issue 5 May 2002 pp 16-33 ... Keywords. Mixed states; entanglement witnesses; partial transpose; quantum computers; von Neumann entropy ...

  14. From Shannon to Quantum Information Science

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 7; Issue 2. From Shannon to Quantum Information Science - Ideas and Techniques. Rajiah Simon. General Article Volume 7 Issue 2 February 2002 pp 66-85. Fulltext. Click here to view fulltext PDF. Permanent link:

  15. Towards Quantifying a Wider Reality: Shannon Exonerata

    Directory of Open Access Journals (Sweden)

    Robert E. Ulanowicz

    2011-10-01

    Full Text Available In 1872 Ludwig von Boltzmann derived a statistical formula to represent the entropy (an apophasis of a highly simplistic system. In 1948 Claude Shannon independently formulated the same expression to capture the positivist essence of information. Such contradictory thrusts engendered decades of ambiguity concerning exactly what is conveyed by the expression. Resolution of widespread confusion is possible by invoking the third law of thermodynamics, which requires that entropy be treated in a relativistic fashion. Doing so parses the Boltzmann expression into separate terms that segregate apophatic entropy from positivist information. Possibly more importantly, the decomposition itself portrays a dialectic-like agonism between constraint and disorder that may provide a more appropriate description of the behavior of living systems than is possible using conventional dynamics. By quantifying the apophatic side of evolution, the Shannon approach to information achieves what no other treatment of the subject affords: It opens the window on a more encompassing perception of reality.

  16. Constructive quantum Shannon decomposition from Cartan involutions

    International Nuclear Information System (INIS)

    Drury, Byron; Love, Peter

    2008-01-01

    The work presented here extends upon the best known universal quantum circuit, the quantum Shannon decomposition proposed by Shende et al (2006 IEEE Trans. Comput.-Aided Des. Integr. Circuits Syst. 25 1000). We obtain the basis of the circuit's design in a pair of Cartan decompositions. This insight gives a simple constructive factoring algorithm in terms of the Cartan involutions corresponding to these decompositions

  17. Constructive quantum Shannon decomposition from Cartan involutions

    Energy Technology Data Exchange (ETDEWEB)

    Drury, Byron; Love, Peter [Department of Physics, 370 Lancaster Ave., Haverford College, Haverford, PA 19041 (United States)], E-mail: plove@haverford.edu

    2008-10-03

    The work presented here extends upon the best known universal quantum circuit, the quantum Shannon decomposition proposed by Shende et al (2006 IEEE Trans. Comput.-Aided Des. Integr. Circuits Syst. 25 1000). We obtain the basis of the circuit's design in a pair of Cartan decompositions. This insight gives a simple constructive factoring algorithm in terms of the Cartan involutions corresponding to these decompositions.

  18. Expected Shannon Entropy and Shannon Differentiation between Subpopulations for Neutral Genes under the Finite Island Model.

    Science.gov (United States)

    Chao, Anne; Jost, Lou; Hsieh, T C; Ma, K H; Sherwin, William B; Rollins, Lee Ann

    2015-01-01

    Shannon entropy H and related measures are increasingly used in molecular ecology and population genetics because (1) unlike measures based on heterozygosity or allele number, these measures weigh alleles in proportion to their population fraction, thus capturing a previously-ignored aspect of allele frequency distributions that may be important in many applications; (2) these measures connect directly to the rich predictive mathematics of information theory; (3) Shannon entropy is completely additive and has an explicitly hierarchical nature; and (4) Shannon entropy-based differentiation measures obey strong monotonicity properties that heterozygosity-based measures lack. We derive simple new expressions for the expected values of the Shannon entropy of the equilibrium allele distribution at a neutral locus in a single isolated population under two models of mutation: the infinite allele model and the stepwise mutation model. Surprisingly, this complex stochastic system for each model has an entropy expressable as a simple combination of well-known mathematical functions. Moreover, entropy- and heterozygosity-based measures for each model are linked by simple relationships that are shown by simulations to be approximately valid even far from equilibrium. We also identify a bridge between the two models of mutation. We apply our approach to subdivided populations which follow the finite island model, obtaining the Shannon entropy of the equilibrium allele distributions of the subpopulations and of the total population. We also derive the expected mutual information and normalized mutual information ("Shannon differentiation") between subpopulations at equilibrium, and identify the model parameters that determine them. We apply our measures to data from the common starling (Sturnus vulgaris) in Australia. Our measures provide a test for neutrality that is robust to violations of equilibrium assumptions, as verified on real world data from starlings.

  19. Expected Shannon Entropy and Shannon Differentiation between Subpopulations for Neutral Genes under the Finite Island Model.

    Directory of Open Access Journals (Sweden)

    Anne Chao

    Full Text Available Shannon entropy H and related measures are increasingly used in molecular ecology and population genetics because (1 unlike measures based on heterozygosity or allele number, these measures weigh alleles in proportion to their population fraction, thus capturing a previously-ignored aspect of allele frequency distributions that may be important in many applications; (2 these measures connect directly to the rich predictive mathematics of information theory; (3 Shannon entropy is completely additive and has an explicitly hierarchical nature; and (4 Shannon entropy-based differentiation measures obey strong monotonicity properties that heterozygosity-based measures lack. We derive simple new expressions for the expected values of the Shannon entropy of the equilibrium allele distribution at a neutral locus in a single isolated population under two models of mutation: the infinite allele model and the stepwise mutation model. Surprisingly, this complex stochastic system for each model has an entropy expressable as a simple combination of well-known mathematical functions. Moreover, entropy- and heterozygosity-based measures for each model are linked by simple relationships that are shown by simulations to be approximately valid even far from equilibrium. We also identify a bridge between the two models of mutation. We apply our approach to subdivided populations which follow the finite island model, obtaining the Shannon entropy of the equilibrium allele distributions of the subpopulations and of the total population. We also derive the expected mutual information and normalized mutual information ("Shannon differentiation" between subpopulations at equilibrium, and identify the model parameters that determine them. We apply our measures to data from the common starling (Sturnus vulgaris in Australia. Our measures provide a test for neutrality that is robust to violations of equilibrium assumptions, as verified on real world data from starlings.

  20. Controlling the Shannon Entropy of Quantum Systems

    Science.gov (United States)

    Xing, Yifan; Wu, Jun

    2013-01-01

    This paper proposes a new quantum control method which controls the Shannon entropy of quantum systems. For both discrete and continuous entropies, controller design methods are proposed based on probability density function control, which can drive the quantum state to any target state. To drive the entropy to any target at any prespecified time, another discretization method is proposed for the discrete entropy case, and the conditions under which the entropy can be increased or decreased are discussed. Simulations are done on both two- and three-dimensional quantum systems, where division and prediction are used to achieve more accurate tracking. PMID:23818819

  1. Controlling the Shannon Entropy of Quantum Systems

    Directory of Open Access Journals (Sweden)

    Yifan Xing

    2013-01-01

    Full Text Available This paper proposes a new quantum control method which controls the Shannon entropy of quantum systems. For both discrete and continuous entropies, controller design methods are proposed based on probability density function control, which can drive the quantum state to any target state. To drive the entropy to any target at any prespecified time, another discretization method is proposed for the discrete entropy case, and the conditions under which the entropy can be increased or decreased are discussed. Simulations are done on both two- and three-dimensional quantum systems, where division and prediction are used to achieve more accurate tracking.

  2. Universality and Shannon entropy of codon usage

    CERN Document Server

    Frappat, L; Sciarrino, A; Sorba, Paul

    2003-01-01

    The distribution functions of the codon usage probabilities, computed over all the available GenBank data, for 40 eukaryotic biological species and 5 chloroplasts, do not follow a Zipf law, but are best fitted by the sum of a constant, an exponential and a linear function in the rank of usage. For mitochondriae the analysis is not conclusive. A quantum-mechanics-inspired model is proposed to describe the observed behaviour. These functions are characterized by parameters that strongly depend on the total GC content of the coding regions of biological species. It is predicted that the codon usage is the same in all exonic genes with the same GC content. The Shannon entropy for codons, also strongly depending on the exonic GC content, is computed.

  3. Shannon versus Kullback-Leibler entropies in nonequilibrium random motion

    International Nuclear Information System (INIS)

    Garbaczewski, Piotr

    2005-01-01

    We analyze dynamical properties of the Shannon information entropy of a continuous probability distribution, which is driven by a standard diffusion process. This entropy choice is confronted with another option, employing the conditional Kullback-Leibler entropy. Both entropies discriminate among various probability distributions, either statically or in the time domain. An asymptotic approach towards equilibrium is typically monotonic in terms of the Kullback entropy. The Shannon entropy time rate needs not to be positive and is a sensitive indicator of the power transfer processes (removal/supply) due to an active environment. In the case of Smoluchowski diffusions, the Kullback entropy time rate coincides with the Shannon entropy 'production' rate

  4. An iOS implementation of the Shannon switching game

    OpenAIRE

    Macík, Miroslav

    2013-01-01

    Shannon switching game is a logical graph game for two players. The game was created by American mathematician Claude Shannon. iOS is an operating system designed for iPhone cellular phone, iPod music player and iPad tablet. The thesis describes existing implementations of the game and also specific implementation for iOS operating system created as a part of this work. This implementation allows you to play against virtual opponent and also supports multiplayer game consisting of two players...

  5. Shannon entropy: A study of confined hydrogenic-like atoms

    Science.gov (United States)

    Nascimento, Wallas S.; Prudente, Frederico V.

    2018-01-01

    The Shannon entropy in the atomic, molecular and chemical physics context is presented by using as test cases the hydrogenic-like atoms Hc, Hec+ and Lic2 + confined by an impenetrable spherical box. Novel expressions for entropic uncertainty relation and Shannon entropies Sr and Sp are proposed to ensure their physical dimensionless characteristic. The electronic ground state energy and the quantities Sr,Sp and St are calculated for the hydrogenic-like atoms to different confinement radii by using a variational method. The global behavior of these quantities and different conjectures are analyzed. The results are compared, when available, with those previously published.

  6. Properties of classical and quantum Jensen-Shannon divergence

    NARCIS (Netherlands)

    J. Briët (Jop); P. Harremoës (Peter)

    2009-01-01

    htmlabstractJensen-Shannon divergence (JD) is a symmetrized and smoothed version of the most important divergence measure of information theory, Kullback divergence. As opposed to Kullback divergence it determines in a very direct way a metric; indeed, it is the square of a metric. We consider a

  7. Shannon information entropy in heavy-ion collisions

    Science.gov (United States)

    Ma, Chun-Wang; Ma, Yu-Gang

    2018-03-01

    The general idea of information entropy provided by C.E. Shannon "hangs over everything we do" and can be applied to a great variety of problems once the connection between a distribution and the quantities of interest is found. The Shannon information entropy essentially quantify the information of a quantity with its specific distribution, for which the information entropy based methods have been deeply developed in many scientific areas including physics. The dynamical properties of heavy-ion collisions (HICs) process make it difficult and complex to study the nuclear matter and its evolution, for which Shannon information entropy theory can provide new methods and observables to understand the physical phenomena both theoretically and experimentally. To better understand the processes of HICs, the main characteristics of typical models, including the quantum molecular dynamics models, thermodynamics models, and statistical models, etc., are briefly introduced. The typical applications of Shannon information theory in HICs are collected, which cover the chaotic behavior in branching process of hadron collisions, the liquid-gas phase transition in HICs, and the isobaric difference scaling phenomenon for intermediate mass fragments produced in HICs of neutron-rich systems. Even though the present applications in heavy-ion collision physics are still relatively simple, it would shed light on key questions we are seeking for. It is suggested to further develop the information entropy methods in nuclear reactions models, as well as to develop new analysis methods to study the properties of nuclear matters in HICs, especially the evolution of dynamics system.

  8. Steganography on quantum pixel images using Shannon entropy

    Science.gov (United States)

    Laurel, Carlos Ortega; Dong, Shi-Hai; Cruz-Irisson, M.

    2016-07-01

    This paper presents a steganographical algorithm based on least significant bit (LSB) from the most significant bit information (MSBI) and the equivalence of a bit pixel image to a quantum pixel image, which permits to make the information communicate secretly onto quantum pixel images for its secure transmission through insecure channels. This algorithm offers higher security since it exploits the Shannon entropy for an image.

  9. Application of Shannon Wavelet Entropy and Shannon Wavelet Packet Entropy in Analysis of Power System Transient Signals

    Directory of Open Access Journals (Sweden)

    Jikai Chen

    2016-12-01

    Full Text Available In a power system, the analysis of transient signals is the theoretical basis of fault diagnosis and transient protection theory. Shannon wavelet entropy (SWE and Shannon wavelet packet entropy (SWPE are powerful mathematics tools for transient signal analysis. Combined with the recent achievements regarding SWE and SWPE, their applications are summarized in feature extraction of transient signals and transient fault recognition. For wavelet aliasing at adjacent scale of wavelet decomposition, the impact of wavelet aliasing is analyzed for feature extraction accuracy of SWE and SWPE, and their differences are compared. Meanwhile, the analyses mentioned are verified by partial discharge (PD feature extraction of power cable. Finally, some new ideas and further researches are proposed in the wavelet entropy mechanism, operation speed and how to overcome wavelet aliasing.

  10. Multiscale Shannon entropy and its application in the stock market

    Science.gov (United States)

    Gu, Rongbao

    2017-10-01

    In this paper, we perform a multiscale entropy analysis on the Dow Jones Industrial Average Index using the Shannon entropy. The stock index shows the characteristic of multi-scale entropy that caused by noise in the market. The entropy is demonstrated to have significant predictive ability for the stock index in both long-term and short-term, and empirical results verify that noise does exist in the market and can affect stock price. It has important implications on market participants such as noise traders.

  11. Advancing Shannon Entropy for Measuring Diversity in Systems

    Directory of Open Access Journals (Sweden)

    R. Rajaram

    2017-01-01

    Full Text Available From economic inequality and species diversity to power laws and the analysis of multiple trends and trajectories, diversity within systems is a major issue for science. Part of the challenge is measuring it. Shannon entropy H has been used to rethink diversity within probability distributions, based on the notion of information. However, there are two major limitations to Shannon’s approach. First, it cannot be used to compare diversity distributions that have different levels of scale. Second, it cannot be used to compare parts of diversity distributions to the whole. To address these limitations, we introduce a renormalization of probability distributions based on the notion of case-based entropy Cc as a function of the cumulative probability c. Given a probability density p(x, Cc measures the diversity of the distribution up to a cumulative probability of c, by computing the length or support of an equivalent uniform distribution that has the same Shannon information as the conditional distribution of p^c(x up to cumulative probability c. We illustrate the utility of our approach by renormalizing and comparing three well-known energy distributions in physics, namely, the Maxwell-Boltzmann, Bose-Einstein, and Fermi-Dirac distributions for energy of subatomic particles. The comparison shows that Cc is a vast improvement over H as it provides a scale-free comparison of these diversity distributions and also allows for a comparison between parts of these diversity distributions.

  12. Kinetics of the Dynamical Information Shannon Entropy for Complex Systems

    International Nuclear Information System (INIS)

    Yulmetyev, R.M.; Yulmetyeva, D.G.

    1999-01-01

    Kinetic behaviour of dynamical information Shannon entropy is discussed for complex systems: physical systems with non-Markovian property and memory in correlation approximation, and biological and physiological systems with sequences of the Markovian and non-Markovian random noises. For the stochastic processes, a description of the information entropy in terms of normalized time correlation functions is given. The influence and important role of two mutually dependent channels of the entropy change, correlation (creation or generation of correlations) and anti-correlation (decay or annihilation of correlation) is discussed. The method developed here is also used in analysis of the density fluctuations in liquid cesium obtained from slow neutron scattering data, fractal kinetics of the long-range fluctuation in the short-time human memory and chaotic dynamics of R-R intervals of human ECG. (author)

  13. Multi-Level Wavelet Shannon Entropy-Based Method for Single-Sensor Fault Location

    Directory of Open Access Journals (Sweden)

    Qiaoning Yang

    2015-10-01

    Full Text Available In actual application, sensors are prone to failure because of harsh environments, battery drain, and sensor aging. Sensor fault location is an important step for follow-up sensor fault detection. In this paper, two new multi-level wavelet Shannon entropies (multi-level wavelet time Shannon entropy and multi-level wavelet time-energy Shannon entropy are defined. They take full advantage of sensor fault frequency distribution and energy distribution across multi-subband in wavelet domain. Based on the multi-level wavelet Shannon entropy, a method is proposed for single sensor fault location. The method firstly uses a criterion of maximum energy-to-Shannon entropy ratio to select the appropriate wavelet base for signal analysis. Then multi-level wavelet time Shannon entropy and multi-level wavelet time-energy Shannon entropy are used to locate the fault. The method is validated using practical chemical gas concentration data from a gas sensor array. Compared with wavelet time Shannon entropy and wavelet energy Shannon entropy, the experimental results demonstrate that the proposed method can achieve accurate location of a single sensor fault and has good anti-noise ability. The proposed method is feasible and effective for single-sensor fault location.

  14. Bivariate Rainfall and Runoff Analysis Using Shannon Entropy Theory

    Science.gov (United States)

    Rahimi, A.; Zhang, L.

    2012-12-01

    Rainfall-Runoff analysis is the key component for many hydrological and hydraulic designs in which the dependence of rainfall and runoff needs to be studied. It is known that the convenient bivariate distribution are often unable to model the rainfall-runoff variables due to that they either have constraints on the range of the dependence or fixed form for the marginal distributions. Thus, this paper presents an approach to derive the entropy-based joint rainfall-runoff distribution using Shannon entropy theory. The distribution derived can model the full range of dependence and allow different specified marginals. The modeling and estimation can be proceeded as: (i) univariate analysis of marginal distributions which includes two steps, (a) using the nonparametric statistics approach to detect modes and underlying probability density, and (b) fitting the appropriate parametric probability density functions; (ii) define the constraints based on the univariate analysis and the dependence structure; (iii) derive and validate the entropy-based joint distribution. As to validate the method, the rainfall-runoff data are collected from the small agricultural experimental watersheds located in semi-arid region near Riesel (Waco), Texas, maintained by the USDA. The results of unviariate analysis show that the rainfall variables follow the gamma distribution, whereas the runoff variables have mixed structure and follow the mixed-gamma distribution. With this information, the entropy-based joint distribution is derived using the first moments, the first moments of logarithm transformed rainfall and runoff, and the covariance between rainfall and runoff. The results of entropy-based joint distribution indicate: (1) the joint distribution derived successfully preserves the dependence between rainfall and runoff, and (2) the K-S goodness of fit statistical tests confirm the marginal distributions re-derived reveal the underlying univariate probability densities which further

  15. A highly efficient pricing method for European-style options based on Shannon wavelets

    NARCIS (Netherlands)

    L. Ortiz Gracia (Luis); C.W. Oosterlee (Cornelis)

    2017-01-01

    textabstractIn the search for robust, accurate and highly efficient financial option valuation techniques, we present here the SWIFT method (Shannon Wavelets Inverse Fourier Technique), based on Shannon wavelets. SWIFT comes with control over approximation errors made by means of sharp quantitative

  16. A Highly Efficient Shannon Wavelet Inverse Fourier Technique for Pricing European Options

    NARCIS (Netherlands)

    Ortiz-Gracia, Luis; Oosterlee, C.W.

    2016-01-01

    In the search for robust, accurate, and highly efficient financial option valuation techniques, we here present the SWIFT method (Shannon wavelets inverse Fourier technique), based on Shannon wavelets. SWIFT comes with control over approximation errors made by means of sharp quantitative error

  17. A highly efficient Shannon wavelet inverse Fourier technique for pricing European options

    NARCIS (Netherlands)

    L. Ortiz Gracia (Luis); C.W. Oosterlee (Cornelis)

    2016-01-01

    htmlabstractIn the search for robust, accurate, and highly efficient financial option valuation techniques, we here present the SWIFT method (Shannon wavelets inverse Fourier technique), based on Shannon wavelets. SWIFT comes with control over approximation errors made by means of

  18. Pricing early-exercise and discrete barrier options by Shannon wavelet expansions

    NARCIS (Netherlands)

    Maree, S. C.; Ortiz-Gracia, L.; Oosterlee, C. W.

    2017-01-01

    We present a pricing method based on Shannon wavelet expansions for early-exercise and discretely-monitored barrier options under exponential L,vy asset dynamics. Shannon wavelets are smooth, and thus approximate the densities that occur in finance well, resulting in exponential convergence.

  19. Jensen–Shannon information of the coherent system lifetime

    International Nuclear Information System (INIS)

    Asadi, Majid; Ebrahimi, Nader; Soofi, Ehsan S.; Zohrevand, Younes

    2016-01-01

    The signature of a coherent system with n components is an n-dimensional vector whose ith element is the probability that the ith failure of the components is fatal to the system. The signature depends only on the system design and provides useful tools for comparison of systems. We propose the Jensen–Shannon information (JS) criteria for comparison of systems, which is a scalar function of the signature and ranks systems based on their designs. The JS of a system is interpreted in terms of the remaining uncertainty about the system lifetime, the utility of dependence between the lifetime and the number of failures of components fatal to the system, and the Bayesian decision theory. The JS is non-negative and its minimum is attained by k-out-of-n systems, which are the least complex systems. This property offers JS as a measure of complexity of a system. Effects of expansion of a system on JS are studied. Application examples include comparisons of various sets of new systems and used but still working systems discussed in the literature. We also give an upper bound for the JS at the general level and compare it with a known upper bound. - Highlights: • Information criteria for comparing systems based on their structures are proposed. • The criteria only depend on the number of failures of its components. • The criteria rank systems based on the complexity of predicting their lifetimes. • The criteria apply to new system and system operating with failed components.

  20. Development of Malaysian women fertility index: Evidence from Shannon's entropy

    Science.gov (United States)

    Jalil, Wan Aznie Fatihah Wan Abd; Sharif, Shamshuritawati

    2017-11-01

    A fertility rate is a measure of the average number of children a woman will have during her childbearing years. Malaysia is now facing a population crisis and the fertility rate continues to decline. This situation will have implications for the age structure of the population where percentages of senior citizens are higher than percentages of people aged below 5 years old. Malaysia is expected to reach aging population status by the year 2035. As the aging population has a very long average life expectancy, the government needs to spend a lot on medical costs for senior citizens and need to increase budgets for pensions. The government may be required to increase tax revenues to support the growing older population. The falling fertility rate requires proper control by relevant authorities, especially through planning and implementation of strategic and effective measures. Hence, this paper aims to develop a fertility index using Shannon's entropy method. The results show that Selangor, Johor, and Sarawak are among the states with the highest values of the fertility index. On the other end of the spectrum, Terengganu, W.P. Labuan, and Perlis are ranked in the last positions according to the fertility index. The information generated from the results in this study can be used as a primary source for the government to design appropriate policies to mitigate dwindling fertility rates among Malaysian women.

  1. Monitoring of zebra mussels in the Shannon-Boyle navigation, other

    OpenAIRE

    Minchin, D.; Lucy, F.; Sullivan, M.

    2002-01-01

    The zebra mussel (Dreissena polymorpha) population has been closely monitored in Ireland following its discovery in 1997. The species has spread from lower Lough Derg, where it was first introduced, to most of the navigable areas of the Shannon and other interconnected navigable waters. This study took place in the summers of 2000 and 2001 and investigated the relative abundance and biomass of zebra mussels found in the main navigations of the Shannon and elsewhere in rivers, canals and lakes...

  2. Monoparametric family of metrics derived from classical Jensen-Shannon divergence

    Science.gov (United States)

    Osán, Tristán M.; Bussandri, Diego G.; Lamberti, Pedro W.

    2018-04-01

    Jensen-Shannon divergence is a well known multi-purpose measure of dissimilarity between probability distributions. It has been proven that the square root of this quantity is a true metric in the sense that, in addition to the basic properties of a distance, it also satisfies the triangle inequality. In this work we extend this last result to prove that in fact it is possible to derive a monoparametric family of metrics from the classical Jensen-Shannon divergence. Motivated by our results, an application into the field of symbolic sequences segmentation is explored. Additionally, we analyze the possibility to extend this result into the quantum realm.

  3. Shannon's Wayにおける恋と結婚の障害

    OpenAIRE

    中村, 豪; Takeshi, Nakamura; 昭和女子大学英語コミュニケーション学科

    2016-01-01

    The theme of this study is Shannon's Way as love story: the hero and the heroine's love and the obstacles to their marriage. The novel was written by a Scottish writer and physician, A.J.Cronin(in full Archibald Joseph Cronin, 1896-1981)and published in 1948. The setting of the story is chiefly Winton, a fictitious city based on Glasgow. The hero is Robert Shannon, a twenty-four-year-old poor but excellent researcher and doctor whose ambition is to be successful in medical science by a great ...

  4. Analysis of Age and Gender Structures for ICD-10 Diagnoses in Outpatient Treatment Using Shannon's Entropy.

    Science.gov (United States)

    Schuster, Fabian; Ostermann, Thomas; Emcke, Timo; Schuster, Reinhard

    2017-01-01

    Diagnostic diversity has been in the focus of several studies of health services research. As the fraction of people with statutory health insurance changes with age and gender it is assumed that diagnostic diversity may be influenced by these parameters. We analyze fractions of patients in Schleswig-Holstein with respect to the chapters of the ICD-10 code in outpatient treatment for quarter 2/2016 with respect to age and gender/sex of the patient. In a first approach we analyzed which diagnose chapters are most relevant in dependence of age and gender. To detect diagnostic diversity, we finally applied Shannon's entropy measure. Due to multimorbidity we used different standardizations. Shannon entropy strongly increases for women after the age of 15, reaching a limit level at the age of 50 years. Between 15 and 70 years we get higher values for women, after 75 years for men. This article describes a straight forward pragmatic approach to diagnostic diversity using Shannon's Entropy. From a methodological point of view, the use of Shannon's entropy as a measure for diversity should gain more attraction to researchers of health services research.

  5. 75 FR 31464 - Certification of the Attorney General; Shannon County, SD

    Science.gov (United States)

    2010-06-03

    ... DEPARTMENT OF JUSTICE Certification of the Attorney General; Shannon County, SD In accordance with... within the scope of the determinations of the Attorney General and the Director of the Census made under...., Attorney General of the United States. [FR Doc. 2010-13285 Filed 6-2-10; 8:45 am] BILLING CODE P ...

  6. Random amino acid mutations and protein misfolding lead to Shannon limit in sequence-structure communication.

    Directory of Open Access Journals (Sweden)

    Andreas Martin Lisewski

    2008-09-01

    Full Text Available The transmission of genomic information from coding sequence to protein structure during protein synthesis is subject to stochastic errors. To analyze transmission limits in the presence of spurious errors, Shannon's noisy channel theorem is applied to a communication channel between amino acid sequences and their structures established from a large-scale statistical analysis of protein atomic coordinates. While Shannon's theorem confirms that in close to native conformations information is transmitted with limited error probability, additional random errors in sequence (amino acid substitutions and in structure (structural defects trigger a decrease in communication capacity toward a Shannon limit at 0.010 bits per amino acid symbol at which communication breaks down. In several controls, simulated error rates above a critical threshold and models of unfolded structures always produce capacities below this limiting value. Thus an essential biological system can be realistically modeled as a digital communication channel that is (a sensitive to random errors and (b restricted by a Shannon error limit. This forms a novel basis for predictions consistent with observed rates of defective ribosomal products during protein synthesis, and with the estimated excess of mutual information in protein contact potentials.

  7. Probabilities and Shannon's Entropy in the Everett Many-Worlds Theory

    Directory of Open Access Journals (Sweden)

    Andreas Wichert

    2016-12-01

    Full Text Available Following a controversial suggestion by David Deutsch that decision theory can solve the problem of probabilities in the Everett many-worlds we suggest that the probabilities are induced by Shannon's entropy that measures the uncertainty of events. We argue that a relational person prefers certainty to uncertainty due to fundamental biological principle of homeostasis.

  8. Scaling behaviour of Fisher and Shannon entropies for the exponential-cosine screened coulomb potential

    Science.gov (United States)

    Abdelmonem, M. S.; Abdel-Hady, Afaf; Nasser, I.

    2017-07-01

    The scaling laws are given for the entropies in the information theory, including the Shannon's entropy, its power, the Fisher's information and the Fisher-Shannon product, using the exponential-cosine screened Coulomb potential. The scaling laws are specified, in the r-space, as a function of |μ - μc, nℓ|, where μ is the screening parameter and μc, nℓ its critical value for the specific quantum numbers n and ℓ. Scaling laws for other physical quantities, such as energy eigenvalues, the moments, static polarisability, transition probabilities, etc. are also given. Some of these are reported for the first time. The outcome is compared with the available literatures' results.

  9. The maximum entropy production and maximum Shannon information entropy in enzyme kinetics

    Science.gov (United States)

    Dobovišek, Andrej; Markovič, Rene; Brumen, Milan; Fajmut, Aleš

    2018-04-01

    We demonstrate that the maximum entropy production principle (MEPP) serves as a physical selection principle for the description of the most probable non-equilibrium steady states in simple enzymatic reactions. A theoretical approach is developed, which enables maximization of the density of entropy production with respect to the enzyme rate constants for the enzyme reaction in a steady state. Mass and Gibbs free energy conservations are considered as optimization constraints. In such a way computed optimal enzyme rate constants in a steady state yield also the most uniform probability distribution of the enzyme states. This accounts for the maximal Shannon information entropy. By means of the stability analysis it is also demonstrated that maximal density of entropy production in that enzyme reaction requires flexible enzyme structure, which enables rapid transitions between different enzyme states. These results are supported by an example, in which density of entropy production and Shannon information entropy are numerically maximized for the enzyme Glucose Isomerase.

  10. Eigensolutions, Shannon entropy and information energy for modified Tietz-Hua potential

    Science.gov (United States)

    Onate, C. A.; Onyeaju, M. C.; Ituen, E. E.; Ikot, A. N.; Ebomwonyi, O.; Okoro, J. O.; Dopamu, K. O.

    2018-04-01

    The Tietz-Hua potential is modified by the inclusion of De ( {{Ch - 1}/{1 - C_{h e^{{ - bh ( {r - re } )}} }}} )be^{{ - bh ( {r - re } )}} term to the Tietz-Hua potential model since a potential of such type is very good in the description and vibrational energy levels for diatomic molecules. The energy eigenvalues and the corresponding eigenfunctions are explicitly obtained using the methodology of parametric Nikiforov-Uvarov. By putting the potential parameter b = 0, in the modified Tietz-Hua potential quickly reduces to the Tietz-Hua potential. To show more applications of our work, we have computed the Shannon entropy and Information energy under the modified Tietz-Hua potential. However, the computation of the Shannon entropy and Information energy is an extension of the work of Falaye et al., who computed only the Fisher information under Tietz-Hua potential.

  11. Human waterborne parasites in zebra mussels ( Dreissena polymorpha) from the Shannon River drainage area, Ireland.

    Science.gov (United States)

    Graczyk, Thaddeus K; Conn, David Bruce; Lucy, Frances; Minchin, Dan; Tamang, Leena; Moura, Lacy N S; DaSilva, Alexandre J

    2004-08-01

    Zebra mussels ( Dreissena polymorpha) from throughout the Shannon River drainage area in Ireland were tested for the anthropozoonotic waterborne parasites Cryptosporidium parvum, Giardia lamblia, Encephalitozoon intestinalis, E. hellem, and Enterocytozoon bieneusi, by the multiplexed combined direct immunofluorescent antibody and fluorescent in situ hybridization method, and PCR. Parasite transmission stages were found at 75% of sites, with the highest mean concentration of 16, nine, and eight C. parvum oocysts, G. lamblia cysts, and Encephalitozoon intestinalis spores/mussel, respectively. On average eight Enterocytozoon bieneusi spores/mussel were recovered at any selected site. Approximately 80% of all parasites were viable and thus capable of initiating human infection. The Shannon River is polluted with serious emerging human waterborne pathogens including C. parvum, against which no therapy exists. Zebra mussels can recover and concentrate environmentally derived pathogens and can be used for the sanitary assessment of water quality.

  12. Applying Shannon's information theory to bacterial and phage genomes and metagenomes

    Science.gov (United States)

    Akhter, Sajia; Bailey, Barbara A.; Salamon, Peter; Aziz, Ramy K.; Edwards, Robert A.

    2013-01-01

    All sequence data contain inherent information that can be measured by Shannon's uncertainty theory. Such measurement is valuable in evaluating large data sets, such as metagenomic libraries, to prioritize their analysis and annotation, thus saving computational resources. Here, Shannon's index of complete phage and bacterial genomes was examined. The information content of a genome was found to be highly dependent on the genome length, GC content, and sequence word size. In metagenomic sequences, the amount of information correlated with the number of matches found by comparison to sequence databases. A sequence with more information (higher uncertainty) has a higher probability of being significantly similar to other sequences in the database. Measuring uncertainty may be used for rapid screening for sequences with matches in available database, prioritizing computational resources, and indicating which sequences with no known similarities are likely to be important for more detailed analysis.

  13. Shannon information of the geomagnetic field for the past 7000 years

    OpenAIRE

    De Santis, A.; Qamili, E.

    2010-01-01

    The present behaviour of the geomagnetic field as expressed by the International Geomagnetic Reference Field (IGRF) deserves special attention when compared with that shown over the past few thousands of years by two paleomagnetic/archeomagnetic models, CALS3K and CALS7K. The application of the Information theory in terms of Shannon Information and K-entropy to these models shows characteristics of an instable geomagnetic field. Although the result is mitigated when we correct the CALS7K mode...

  14. Inferring community properties of benthic macroinvertebrates in streams using Shannon index and exergy

    Science.gov (United States)

    Nguyen, Tuyen Van; Cho, Woon-Seok; Kim, Hungsoo; Jung, Il Hyo; Kim, YongKuk; Chon, Tae-Soo

    2014-03-01

    Definition of ecological integrity based on community analysis has long been a critical issue in risk assessment for sustainable ecosystem management. In this work, two indices (i.e., Shannon index and exergy) were selected for the analysis of community properties of benthic macroinvertebrate community in streams in Korea. For this purpose, the means and variances of both indices were analyzed. The results found an extra scope of structural and functional properties in communities in response to environmental variabilities and anthropogenic disturbances. The combination of these two parameters (four indices) was feasible in identification of disturbance agents (e.g., industrial pollution or organic pollution) and specifying states of communities. The four-aforementioned parameters (means and variances of Shannon index and exergy) were further used as input data in a self-organizing map for the characterization of water quality. Our results suggested that Shannon index and exergy in combination could be utilized as a suitable reference system and would be an efficient tool for assessment of the health of aquatic ecosystems exposed to environmental disturbances.

  15. The Shannon entropy as a measure of diffusion in multidimensional dynamical systems

    Science.gov (United States)

    Giordano, C. M.; Cincotta, P. M.

    2018-05-01

    In the present work, we introduce two new estimators of chaotic diffusion based on the Shannon entropy. Using theoretical, heuristic and numerical arguments, we show that the entropy, S, provides a measure of the diffusion extent of a given small initial ensemble of orbits, while an indicator related with the time derivative of the entropy, S', estimates the diffusion rate. We show that in the limiting case of near ergodicity, after an appropriate normalization, S' coincides with the standard homogeneous diffusion coefficient. The very first application of this formulation to a 4D symplectic map and to the Arnold Hamiltonian reveals very successful and encouraging results.

  16. Shannon Entropy and Mutual Information for Multivariate Skew-Elliptical Distributions

    KAUST Repository

    Arellano-Valle, Reinaldo B.

    2012-02-27

    The entropy and mutual information index are important concepts developed by Shannon in the context of information theory. They have been widely studied in the case of the multivariate normal distribution. We first extend these tools to the full symmetric class of multivariate elliptical distributions and then to the more flexible families of multivariate skew-elliptical distributions. We study in detail the cases of the multivariate skew-normal and skew-t distributions. We implement our findings to the application of the optimal design of an ozone monitoring station network in Santiago de Chile. © 2012 Board of the Foundation of the Scandinavian Journal of Statistics.

  17. Towards an information extraction and knowledge formation framework based on Shannon entropy

    Directory of Open Access Journals (Sweden)

    Iliescu Dragoș

    2017-01-01

    Full Text Available Information quantity subject is approached in this paperwork, considering the specific domain of nonconforming product management as information source. This work represents a case study. Raw data were gathered from a heavy industrial works company, information extraction and knowledge formation being considered herein. Involved method for information quantity estimation is based on Shannon entropy formula. Information and entropy spectrum are decomposed and analysed for extraction of specific information and knowledge-that formation. The result of the entropy analysis point out the information needed to be acquired by the involved organisation, this being presented as a specific knowledge type.

  18. An Isomorphism between Lyapunov Exponents and Shannon's Channel Capacity

    Energy Technology Data Exchange (ETDEWEB)

    Friedland, Gerald [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Metere, Alfredo [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-06-07

    We demonstrate that discrete Lyapunov exponents are isomorphic to numeric overflows of the capacity of an arbitrary noiseless and memoryless channel in a Shannon communication model with feedback. The isomorphism allows the understanding of Lyapunov exponents in terms of Information Theory, rather than the traditional definitions in chaos theory. The result also implies alternative approaches to the calculation of related quantities, such as the Kolmogorov Sinai entropy which has been linked to thermodynamic entropy. This work provides a bridge between fundamental physics and information theory. It suggests, among other things, that machine learning and other information theory methods can be employed at the core of physics simulations.

  19. An interview with Sandra C. Matherly and Shannon Hodges. Interview by Connie C. Curran.

    Science.gov (United States)

    Matherly, S C; Hodges, S

    1995-01-01

    Sandra C. Matherly, MA, RNC, FNP, is senior vice president, business development, and Shannon Hodges, MBA, is vice president, clinical development, Nurse On Call, Inc., Norcross, GA. Founded in 1993, Nurse on Call is a software and services company offering nursing, medical, and business expertise in setting up and operating a patient management unit using telecommunications and information systems. In this interview, Ms. Matherly and Ms. Hodges discuss the history and development of Nurse on Call, and offer advice for starting a successful nurse entrepreneur enterprise.

  20. Quantum Entanglement and Shannon Information Entropy for the Doubly Excited Resonance State in Positronium Negative Ion

    Directory of Open Access Journals (Sweden)

    Chien-Hao Lin

    2015-09-01

    Full Text Available In the present work, we report an investigation on quantum entanglement in the doubly excited 2s2 1Se resonance state of the positronium negative ion by using highly correlated Hylleraas type wave functions, determined by calculation of the density of resonance states with the stabilization method. Once the resonance wave function is obtained, the spatial (electron-electron orbital entanglement entropies (von Neumann and linear can be quantified using the Schmidt decomposition method. Furthermore, Shannon entropy in position space, a measure for localization (or delocalization for such a doubly excited state, is also calculated.

  1. Shannon Entropy and Mutual Information for Multivariate Skew-Elliptical Distributions

    KAUST Repository

    Arellano-Valle, Reinaldo B.; Contreras-Reyes, Javier E.; Genton, Marc G.

    2012-01-01

    The entropy and mutual information index are important concepts developed by Shannon in the context of information theory. They have been widely studied in the case of the multivariate normal distribution. We first extend these tools to the full symmetric class of multivariate elliptical distributions and then to the more flexible families of multivariate skew-elliptical distributions. We study in detail the cases of the multivariate skew-normal and skew-t distributions. We implement our findings to the application of the optimal design of an ozone monitoring station network in Santiago de Chile. © 2012 Board of the Foundation of the Scandinavian Journal of Statistics.

  2. Shannon information of the geomagnetic field for the past 7000 years

    Directory of Open Access Journals (Sweden)

    A. De Santis

    2010-02-01

    Full Text Available The present behaviour of the geomagnetic field as expressed by the International Geomagnetic Reference Field (IGRF deserves special attention when compared with that shown over the past few thousands of years by two paleomagnetic/archeomagnetic models, CALS3K and CALS7K. The application of the Information theory in terms of Shannon Information and K-entropy to these models shows characteristics of an instable geomagnetic field. Although the result is mitigated when we correct the CALS7K model for its typical spectral damping, the present geomagnetic field as represented by IGRF is still rather distinct, at least for the past 4000 years, a result that is further confirmed by the CALS3K model. This is consistent with a significant global critical state started at around 1750, and still present, characterised by significant decays of the geomagnetic dipole, energy and Shannon information and high K-entropy. The details of how these characteristics may develop are not clear, since the present state could move toward an excursion or a geomagnetic polarity reversal, but we cannot exclude the possibility that the "critical" behaviour will become again more "normal", stopping the apparent trend of the recent geomagnetic field decay.

  3. Shannon Entropy in Atoms: A Test for the Assessment of Density Functionals in Kohn-Sham Theory

    Directory of Open Access Journals (Sweden)

    Claudio Amovilli

    2018-05-01

    Full Text Available Electron density is used to compute Shannon entropy. The deviation from the Hartree–Fock (HF of this quantity has been observed to be related to correlation energy. Thus, Shannon entropy is here proposed as a valid quantity to assess the quality of an energy density functional developed within Kohn–Sham theory. To this purpose, results from eight different functionals, representative of Jacob’s ladder, are compared with accurate results obtained from diffusion quantum Monte Carlo (DMC computations. For three series of atomic ions, our results show that the revTPSS and the PBE0 functionals are the best, whereas those based on local density approximation give the largest discrepancy from DMC Shannon entropy.

  4. Logarithmic terms in entanglement entropies of 2D quantum critical points and Shannon entropies of spin chains.

    Science.gov (United States)

    Zaletel, Michael P; Bardarson, Jens H; Moore, Joel E

    2011-07-08

    Universal logarithmic terms in the entanglement entropy appear at quantum critical points (QCPs) in one dimension (1D) and have been predicted in 2D at QCPs described by 2D conformal field theories. The entanglement entropy in a strip geometry at such QCPs can be obtained via the "Shannon entropy" of a 1D spin chain with open boundary conditions. The Shannon entropy of the XXZ chain is found to have a logarithmic term that implies, for the QCP of the square-lattice quantum dimer model, a logarithm with universal coefficient ±0.25. However, the logarithm in the Shannon entropy of the transverse-field Ising model, which corresponds to entanglement in the 2D Ising conformal QCP, is found to have a singular dependence on the replica or Rényi index resulting from flows to different boundary conditions at the entanglement cut.

  5. Information adaptation the interplay between Shannon information and semantic information in cognition

    CERN Document Server

    Haken, Hermann

    2015-01-01

    This monograph demonstrates the interplay between Shannon information and semantic information in cognition. It shows that Shannon’s information acts as driving force for the formation of semantic information; and vice versa, namely, that semantic information participates in the formation of Shannonian information. The authors show that in cognition, Shannonian and semantic information are interrelated as two aspects of a cognitive process termed as information adaptation. In the latter the mind/brain adapts to the environment by the deflating and/or inflating of the information conveyed by the environment. In the process of information adaptation, quantitative variations in Shannon’s information entail different meanings while different meanings affect the quantity of information. The book illustrates the above conceptually and mathematically by reference to three cognitive processes: pattern recognition, face learning and the recognition of a moving object.

  6. PHONOCARDIOGRAM SIGNAL ANALYSIS FOR MURMUR DIAGNOSING USING SHANNON ENERGY ENVELOP AND SEQUENCED DWT DECOMPOSITION

    Directory of Open Access Journals (Sweden)

    MAZIN Z. OTHMAN

    2017-09-01

    Full Text Available This paper presents a proposed procedure to analyze the PCG (Phono-CardioGram signal recorded by an electronic stethoscope. The procedure concludes heart sound cycle segmentation followed by a detecting step to categorize the normal cases from that which are characterized as an abnormal one (mainly Mitral Regurgitation MR and Mitral Stenosis MS. This is achieving using Shannon energy envelop. Furthermore, a diagnosing step is added to recognize the MR and MS cases from other abnormal cases using FFT (Fast Fourier Transform applied to the segmented murmur period. The MR and MS cases were selected since it is the most popular abnormal heart cases recorded in the Middle East countries. The obtained results pleased and agreed many cardiac specialists. The MATLAB is the main software environment used in this work.

  7. Resource and environment efficiency analysis of provinces in China: A DEA approach based on Shannon's entropy

    International Nuclear Information System (INIS)

    Bian Yiwen; Yang Feng

    2010-01-01

    Data envelopment analysis (DEA) has been widely used in energy efficiency and environment efficiency analysis in recent years. Based on the existing environment DEA technology, this paper presents several DEA models for estimating the aggregated efficiency of resource and environment. These models can evaluate DMUs' energy efficiencies and environment efficiencies simultaneously. However, efficiency ranking results obtained from these models are not the same, and each model can provide some valuable information of DMUs' efficiencies, which we could not ignore. Under this situation, it may be hard for us to choose a specific model in practice. To address this kind of performance evaluation problem, the current paper extends Shannon-DEA procedure to establish a comprehensive efficiency measure for appraising DMUs' resource and environment efficiencies. In the proposed approach, the measure for evaluating a model's importance degree is provided, and the targets setting approach of inputs/outputs for DMU managers to improve DMUs' energy and environmental efficiencies is also discussed. We illustrate the proposed approach using real data set of 30 provinces in China.

  8. Shannon Meets Fick on the Microfluidic Channel: Diffusion Limit to Sum Broadcast Capacity for Molecular Communication.

    Science.gov (United States)

    Bicen, A Ozan; Lehtomaki, Janne J; Akyildiz, Ian F

    2018-03-01

    Molecular communication (MC) over a microfluidic channel with flow is investigated based on Shannon's channel capacity theorem and Fick's laws of diffusion. Specifically, the sum capacity for MC between a single transmitter and multiple receivers (broadcast MC) is studied. The transmitter communicates by using different types of signaling molecules with each receiver over the microfluidic channel. The transmitted molecules propagate through microfluidic channel until reaching the corresponding receiver. Although the use of different types of molecules provides orthogonal signaling, the sum broadcast capacity may not scale with the number of the receivers due to physics of the propagation (interplay between convection and diffusion based on distance). In this paper, the performance of broadcast MC on a microfluidic chip is characterized by studying the physical geometry of the microfluidic channel and leveraging the information theory. The convergence of the sum capacity for microfluidic broadcast channel is analytically investigated based on the physical system parameters with respect to the increasing number of molecular receivers. The analysis presented here can be useful to predict the achievable information rate in microfluidic interconnects for the biochemical computation and microfluidic multi-sample assays.

  9. Software Code Smell Prediction Model Using Shannon, Rényi and Tsallis Entropies

    Directory of Open Access Journals (Sweden)

    Aakanshi Gupta

    2018-05-01

    Full Text Available The current era demands high quality software in a limited time period to achieve new goals and heights. To meet user requirements, the source codes undergo frequent modifications which can generate the bad smells in software that deteriorate the quality and reliability of software. Source code of the open source software is easily accessible by any developer, thus frequently modifiable. In this paper, we have proposed a mathematical model to predict the bad smells using the concept of entropy as defined by the Information Theory. Open-source software Apache Abdera is taken into consideration for calculating the bad smells. Bad smells are collected using a detection tool from sub components of the Apache Abdera project, and different measures of entropy (Shannon, Rényi and Tsallis entropy. By applying non-linear regression techniques, the bad smells that can arise in the future versions of software are predicted based on the observed bad smells and entropy measures. The proposed model has been validated using goodness of fit parameters (prediction error, bias, variation, and Root Mean Squared Prediction Error (RMSPE. The values of model performance statistics ( R 2 , adjusted R 2 , Mean Square Error (MSE and standard error also justify the proposed model. We have compared the results of the prediction model with the observed results on real data. The results of the model might be helpful for software development industries and future researchers.

  10. Fuzzy Shannon Entropy: A Hybrid GIS-Based Landslide Susceptibility Mapping Method

    Directory of Open Access Journals (Sweden)

    Majid Shadman Roodposhti

    2016-09-01

    Full Text Available Assessing Landslide Susceptibility Mapping (LSM contributes to reducing the risk of living with landslides. Handling the vagueness associated with LSM is a challenging task. Here we show the application of hybrid GIS-based LSM. The hybrid approach embraces fuzzy membership functions (FMFs in combination with Shannon entropy, a well-known information theory-based method. Nine landslide-related criteria, along with an inventory of landslides containing 108 recent and historic landslide points, are used to prepare a susceptibility map. A random split into training (≈70% and testing (≈30% samples are used for training and validation of the LSM model. The study area—Izeh—is located in the Khuzestan province of Iran, a highly susceptible landslide zone. The performance of the hybrid method is evaluated using receiver operating characteristics (ROC curves in combination with area under the curve (AUC. The performance of the proposed hybrid method with AUC of 0.934 is superior to multi-criteria evaluation approaches using a subjective scheme in this research in comparison with a previous study using the same dataset through extended fuzzy multi-criteria evaluation with AUC value of 0.894, and was built on the basis of decision makers’ evaluation in the same study area.

  11. A new qualitative acoustic emission parameter based on Shannon's entropy for damage monitoring

    Science.gov (United States)

    Chai, Mengyu; Zhang, Zaoxiao; Duan, Quan

    2018-02-01

    An important objective of acoustic emission (AE) non-destructive monitoring is to accurately identify approaching critical damage and to avoid premature failure by means of the evolutions of AE parameters. One major drawback of most parameters such as count and rise time is that they are strongly dependent on the threshold and other settings employed in AE data acquisition system. This may hinder the correct reflection of original waveform generated from AE sources and consequently bring difficulty for the accurate identification of the critical damage and early failure. In this investigation, a new qualitative AE parameter based on Shannon's entropy, i.e. AE entropy is proposed for damage monitoring. Since it derives from the uncertainty of amplitude distribution of each AE waveform, it is independent of the threshold and other time-driven parameters and can characterize the original micro-structural deformations. Fatigue crack growth test on CrMoV steel and three point bending test on a ductile material are conducted to validate the feasibility and effectiveness of the proposed parameter. The results show that the new parameter, compared to AE amplitude, is more effective in discriminating the different damage stages and identifying the critical damage.

  12. Building diversity in REU programs through MIMSUP at the Shannon Point Marine Center

    Science.gov (United States)

    Bingham, B. L.; Sulkin, S.

    2011-12-01

    The road to a career in the ocean sciences can be long and challenging, particularly for students from racial/ethnic groups underrepresented in the field. For the past 21 years, faculty and staff at the Shannon Point Marine Center, Western Washington University have annually administered the NSF-funded Multicultural Initiative in the Marine Sciences: Undergraduate Participation (MIMSUP) program. The goal of MIMSUP is to increase diversity in the ocean sciences by moving students though their undergraduate programs into advanced education and leadership positions in the field. Helping students find positions in REU and other focused research programs is an important step along this path. Primary obstacles for the students include 1) a lack of knowledge about opportunities available to them, 2) a lack of experience preparing quality applications and 3) a lack of confidence in their ability to compete for positions. Focused mentoring, with an emphasis on skills development is important in helping outstanding, though inexperienced, students find and excel in REU programs.

  13. R Peak Detection Method Using Wavelet Transform and Modified Shannon Energy Envelope.

    Science.gov (United States)

    Park, Jeong-Seon; Lee, Sang-Woong; Park, Unsang

    2017-01-01

    Rapid automatic detection of the fiducial points-namely, the P wave, QRS complex, and T wave-is necessary for early detection of cardiovascular diseases (CVDs). In this paper, we present an R peak detection method using the wavelet transform (WT) and a modified Shannon energy envelope (SEE) for rapid ECG analysis. The proposed WTSEE algorithm performs a wavelet transform to reduce the size and noise of ECG signals and creates SEE after first-order differentiation and amplitude normalization. Subsequently, the peak energy envelope (PEE) is extracted from the SEE. Then, R peaks are estimated from the PEE, and the estimated peaks are adjusted from the input ECG. Finally, the algorithm generates the final R features by validating R-R intervals and updating the extracted R peaks. The proposed R peak detection method was validated using 48 first-channel ECG records of the MIT-BIH arrhythmia database with a sensitivity of 99.93%, positive predictability of 99.91%, detection error rate of 0.16%, and accuracy of 99.84%. Considering the high detection accuracy and fast processing speed due to the wavelet transform applied before calculating SEE, the proposed method is highly effective for real-time applications in early detection of CVDs.

  14. Quantification of errors in ordinal outcome scales using shannon entropy: effect on sample size calculations.

    Science.gov (United States)

    Mandava, Pitchaiah; Krumpelman, Chase S; Shah, Jharna N; White, Donna L; Kent, Thomas A

    2013-01-01

    Clinical trial outcomes often involve an ordinal scale of subjective functional assessments but the optimal way to quantify results is not clear. In stroke, the most commonly used scale, the modified Rankin Score (mRS), a range of scores ("Shift") is proposed as superior to dichotomization because of greater information transfer. The influence of known uncertainties in mRS assessment has not been quantified. We hypothesized that errors caused by uncertainties could be quantified by applying information theory. Using Shannon's model, we quantified errors of the "Shift" compared to dichotomized outcomes using published distributions of mRS uncertainties and applied this model to clinical trials. We identified 35 randomized stroke trials that met inclusion criteria. Each trial's mRS distribution was multiplied with the noise distribution from published mRS inter-rater variability to generate an error percentage for "shift" and dichotomized cut-points. For the SAINT I neuroprotectant trial, considered positive by "shift" mRS while the larger follow-up SAINT II trial was negative, we recalculated sample size required if classification uncertainty was taken into account. Considering the full mRS range, error rate was 26.1%±5.31 (Mean±SD). Error rates were lower for all dichotomizations tested using cut-points (e.g. mRS 1; 6.8%±2.89; overall pdecrease in reliability. The resultant errors need to be considered since sample size may otherwise be underestimated. In principle, we have outlined an approach to error estimation for any condition in which there are uncertainties in outcome assessment. We provide the user with programs to calculate and incorporate errors into sample size estimation.

  15. Fault feature extraction method based on local mean decomposition Shannon entropy and improved kernel principal component analysis model

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    Jinlu Sheng

    2016-07-01

    Full Text Available To effectively extract the typical features of the bearing, a new method that related the local mean decomposition Shannon entropy and improved kernel principal component analysis model was proposed. First, the features are extracted by time–frequency domain method, local mean decomposition, and using the Shannon entropy to process the original separated product functions, so as to get the original features. However, the features been extracted still contain superfluous information; the nonlinear multi-features process technique, kernel principal component analysis, is introduced to fuse the characters. The kernel principal component analysis is improved by the weight factor. The extracted characteristic features were inputted in the Morlet wavelet kernel support vector machine to get the bearing running state classification model, bearing running state was thereby identified. Cases of test and actual were analyzed.

  16. Parametric scaling from species relative abundances to absolute abundances in the computation of biological diversity: a first proposal using Shannon's entropy.

    Science.gov (United States)

    Ricotta, Carlo

    2003-01-01

    Traditional diversity measures such as the Shannon entropy are generally computed from the species' relative abundance vector of a given community to the exclusion of species' absolute abundances. In this paper, I first mention some examples where the total information content associated with a given community may be more adequate than Shannon's average information content for a better understanding of ecosystem functioning. Next, I propose a parametric measure of statistical information that contains both Shannon's entropy and total information content as special cases of this more general function.

  17. Quantification of errors in ordinal outcome scales using shannon entropy: effect on sample size calculations.

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    Pitchaiah Mandava

    Full Text Available OBJECTIVE: Clinical trial outcomes often involve an ordinal scale of subjective functional assessments but the optimal way to quantify results is not clear. In stroke, the most commonly used scale, the modified Rankin Score (mRS, a range of scores ("Shift" is proposed as superior to dichotomization because of greater information transfer. The influence of known uncertainties in mRS assessment has not been quantified. We hypothesized that errors caused by uncertainties could be quantified by applying information theory. Using Shannon's model, we quantified errors of the "Shift" compared to dichotomized outcomes using published distributions of mRS uncertainties and applied this model to clinical trials. METHODS: We identified 35 randomized stroke trials that met inclusion criteria. Each trial's mRS distribution was multiplied with the noise distribution from published mRS inter-rater variability to generate an error percentage for "shift" and dichotomized cut-points. For the SAINT I neuroprotectant trial, considered positive by "shift" mRS while the larger follow-up SAINT II trial was negative, we recalculated sample size required if classification uncertainty was taken into account. RESULTS: Considering the full mRS range, error rate was 26.1%±5.31 (Mean±SD. Error rates were lower for all dichotomizations tested using cut-points (e.g. mRS 1; 6.8%±2.89; overall p<0.001. Taking errors into account, SAINT I would have required 24% more subjects than were randomized. CONCLUSION: We show when uncertainty in assessments is considered, the lowest error rates are with dichotomization. While using the full range of mRS is conceptually appealing, a gain of information is counter-balanced by a decrease in reliability. The resultant errors need to be considered since sample size may otherwise be underestimated. In principle, we have outlined an approach to error estimation for any condition in which there are uncertainties in outcome assessment. We

  18. Bowery to Broadway. The American Irish in Classic Hollywood Cinema (Christopher Shannon & New Irish Storytellers. Narrative Strategies in Film (Díóg O’Connell

    Directory of Open Access Journals (Sweden)

    Carlos Menéndez-Otero

    2011-03-01

    Full Text Available Reseñas de los libros de cine Bowery to Broadway. The American Irish in Classic Hollywood Cinema (Christopher Shannon 2010 & New Irish Storytellers. Narrative Strategies in Film (Díóg O’Connell 2010

  19. Epileptic seizure detection using DWT-based approximate entropy, Shannon entropy and support vector machine: a case study.

    Science.gov (United States)

    Sharmila, A; Aman Raj, Suman; Shashank, Pandey; Mahalakshmi, P

    2018-01-01

    In this work, we have used a time-frequency domain analysis method called discrete wavelet transform (DWT) technique. This method stand out compared to other proposed methods because of its algorithmic elegance and accuracy. A wavelet is a mathematical function based on time-frequency analysis in signal processing. It is useful particularly because it allows a weak signal to be recovered from a noisy signal without much distortion. A wavelet analysis works by analysing the image and converting it to mathematical function which is decoded by the receiver. Furthermore, we have used Shannon entropy and approximate entropy (ApEn) for extracting the complexities associated with electroencephalographic (EEG) signals. The ApEn is a suitable feature to characterise the EEGs because its value drops suddenly due to excessive synchronous discharge of neurons in the brain during epileptic activity in this study. EEG signals are decomposed into six EEG sub-bands namely D1-D5 and A5 using DWT technique. Non-linear features such as ApEn and Shannon entropy are calculated from these sub-bands and support vector machine classifiers are used for classification purpose. This scheme is tested using EEG data recorded from five healthy subjects and five epileptic patients during the inter-ictal and ictal periods. The data are acquired from University of Bonn, Germany. The proposed method is evaluated through 15 classification problems, and obtained high classification accuracy of 100% for two cases and it indicates the good classifying performance of the proposed method.

  20. Evaluating the discriminatory power of EQ-5D, HUI2 and HUI3 in a US general population survey using Shannon's indices

    NARCIS (Netherlands)

    Janssen, Mathieu F. Bas; Birnie, Erwin; Bonsel, Gouke J.

    2007-01-01

    OBJECTIVES: To compare quantitatively the discriminatory power of the EQ-5D, HUI2 and HUI3 in terms of absolute and relative informativity, using Shannon's indices. METHODS: EQ-5D and HUI2/3 data completed by a sample of the general adult US population (N = 3,691) were used. Five dimensions allowed

  1. Attractiveness of black and white modified Shannon traps to phlebotomine sandflies (Diptera, Psychodidae in the Brazilian Amazon Basin, an area of intense transmission of American cutaneous leishmaniasis

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    Brilhante Andreia Fernandes

    2017-01-01

    Full Text Available In the Amazon region the phlebotomine fauna is considered one of the most diverse in the world. The use of Shannon traps may provide information on the anthropophily of the species and improve the traps’ performance in terms of diversity and quantity of insects collected when white and black colored traps are used together. This study sought to verify the attractiveness of the traps to the phlebotomine species of the Brazilian Amazon basin using Shannon traps under these conditions. The insects were collected using two Shannon traps installed side by side, one white and the other black, in a primary forest area of the municipality of Xapuri, Acre, Brazil. Samples were collected once a month during the period August 2013 to July 2015. A sample of females was dissected to test for natural infection by flagellates. A total of 6,309 (864 males and 5,445 females specimens (36 species were collected. Psychodopygus carrerai carrerai (42%, Nyssomyia shawi (36%, and Psychodopygus davisi (13%, together represented 90% of the insects collected. Nyssomyia shawi and Psychodopygus davisi were more attracted by the white color. Specimens of Nyssomyia shawi, Nyssomyia whitmani, and Psychodopygus hirsutus hirsutus were found naturally infected by flagellates in the mid and hindgut. This is the first study in Acre state using and comparing both black and white Shannon traps, demonstrating the richness, diversity, and anthropophilic behavior of the phlebotomine species and identifying proven and putative vectors of the etiological agents of leishmaniasis.

  2. Sand Fly Fauna (Diptera, Pcychodidae, Phlebotominae) in Different Leishmaniasis-Endemic Areas of Ecuador, Surveyed Using a Newly Named Mini-Shannon Trap

    Science.gov (United States)

    Hashiguchi, Kazue; Velez N., Lenin; Kato, Hirotomo; Criollo F., Hipatia; Romero A., Daniel; Gomez L., Eduardo; Martini R., Luiggi; Zambrano C., Flavio; Calvopina H., Manuel; Caceres G., Abraham; Hashiguchi, Yoshihisa

    2014-01-01

    To study the sand fly fauna, surveys were performed at four different leishmaniasis-endemic sites in Ecuador from February 2013 to April 2014. A modified and simplified version of the conventional Shannon trap was named “mini-Shannon trap” and put to multiple uses at the different study sites in limited, forested and narrow spaces. The mini-Shannon, CDC light trap and protected human landing method were employed for sand fly collection. The species identification of sand flies was performed mainly based on the morphology of spermathecae and cibarium, after dissection of fresh samples. In this study, therefore, only female samples were used for analysis. A total of 1,480 female sand flies belonging to 25 Lutzomyia species were collected. The number of female sand flies collected was 417 (28.2%) using the mini-Shannon trap, 259 (17.5%) using the CDC light trap and 804 (54.3%) by human landing. The total number of sand flies per trap collected by the different methods was markedly affected by the study site, probably because of the various composition of species at each locality. Furthermore, as an additional study, the attraction of sand flies to mini-Shannon traps powered with LED white-light and LED black-light was investigated preliminarily, together with the CDC light trap and human landing. As a result, a total of 426 sand flies of nine Lutzomyia species, including seven man-biting and two non-biting species, were collected during three capture trials in May and June 2014 in an area endemic for leishmaniasis (La Ventura). The black-light proved relatively superior to the white-light with regard to capture numbers, but no significant statistical difference was observed between the two traps. PMID:25589880

  3. Shannon Entropy and K-Means Method for Automatic Diagnosis of Broken Rotor Bars in Induction Motors Using Vibration Signals

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    David Camarena-Martinez

    2016-01-01

    Full Text Available For industry, the induction motors are essential elements in production chains. Despite the robustness of induction motors, they are susceptible to failures. The broken rotor bar (BRB fault in induction motors has received special attention since one of its characteristics is that the motor can continue operating with apparent normality; however, at certain point the fault may cause severe damage to the motor. In this work, a methodology to detect BRBs using vibration signals is proposed. The methodology uses the Shannon entropy to quantify the amount of information provided by the vibration signals, which changes due to the presence of new frequency components associated with the fault. For automatic diagnosis, the K-means cluster algorithm and a decision-making unit that looks for the nearest cluster through the Euclidian distance are applied. Unlike other reported works, the proposal can diagnose the BRB condition during startup transient and steady state regimes of operation. Additionally, the proposal is also implemented into a field programmable gate array in order to offer a low-cost and low-complex online monitoring system. The obtained results demonstrate the proposal effectiveness to diagnose half, one, and two BRBs.

  4. Shannon Entropy-Based Wavelet Transform Method for Autonomous Coherent Structure Identification in Fluid Flow Field Data

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    Kartik V. Bulusu

    2015-09-01

    Full Text Available The coherent secondary flow structures (i.e., swirling motions in a curved artery model possess a variety of spatio-temporal morphologies and can be encoded over an infinitely-wide range of wavelet scales. Wavelet analysis was applied to the following vorticity fields: (i a numerically-generated system of Oseen-type vortices for which the theoretical solution is known, used for bench marking and evaluation of the technique; and (ii experimental two-dimensional, particle image velocimetry data. The mother wavelet, a two-dimensional Ricker wavelet, can be dilated to infinitely large or infinitesimally small scales. We approached the problem of coherent structure detection by means of continuous wavelet transform (CWT and decomposition (or Shannon entropy. The main conclusion of this study is that the encoding of coherent secondary flow structures can be achieved by an optimal number of binary digits (or bits corresponding to an optimal wavelet scale. The optimal wavelet-scale search was driven by a decomposition entropy-based algorithmic approach and led to a threshold-free coherent structure detection method. The method presented in this paper was successfully utilized in the detection of secondary flow structures in three clinically-relevant blood flow scenarios involving the curved artery model under a carotid artery-inspired, pulsatile inflow condition. These scenarios were: (i a clean curved artery; (ii stent-implanted curved artery; and (iii an idealized Type IV stent fracture within the curved artery.

  5. Multiscale Model Selection for High-Frequency Financial Data of a Large Tick Stock by Means of the Jensen–Shannon Metric

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    Gianbiagio Curato

    2014-01-01

    Full Text Available Modeling financial time series at different time scales is still an open challenge. The choice of a suitable indicator quantifying the distance between the model and the data is therefore of fundamental importance for selecting models. In this paper, we propose a multiscale model selection method based on the Jensen–Shannon distance in order to select the model that is able to better reproduce the distribution of price changes at different time scales. Specifically, we consider the problem of modeling the ultra high frequency dynamics of an asset with a large tick-to-price ratio. We study the price process at different time scales and compute the Jensen–Shannon distance between the original dataset and different models, showing that the coupling between spread and returns is important to model return distribution at different time scales of observation, ranging from the scale of single transactions to the daily time scale.

  6. Fisher information and Shannon entropy for on-line detection of transient signal high-values in laser Doppler flowmetry signals of healthy subjects

    International Nuclear Information System (INIS)

    Humeau, Anne; Trzepizur, Wojciech; Abraham, Pierre; Rousseau, David; Chapeau-Blondeau, Francois

    2008-01-01

    Laser Doppler flowmetry (LDF) is an easy-to-use method for the assessment of microcirculatory blood flow in tissues. However, LDF recordings very often present TRAnsient Signal High-values (TRASH), generally of a few seconds. These TRASH can come from tissue motions, optical fibre movements, movements of the probe head relative to the tissue, etc. They often lead to difficulties in signal global interpretations. In order to test the possibility of detecting automatically these TRASH for their removal, we process noisy and noiseless LDF signals with two indices from information theory, namely Fisher information and Shannon entropy. For this purpose, LDF signals from 13 healthy subjects are recorded at rest, during vascular occlusion of 3 min, and during post-occlusive hyperaemia. Computation of Fisher information and Shannon entropy values shows that, when calibrated, these two indices can be complementary to detect TRASH and be insensitive to the rapid increases of blood flow induced by post-occlusive hyperaemia. Moreover, the real-time algorithm has the advantage of being easy to implement and does not require any frequency analysis. This study opens new fields of application for Fisher information and Shannon entropy: LDF 'denoising'

  7. Information and meaning revisiting Shannon's theory of communication and extending it to address todays technical problems.

    Energy Technology Data Exchange (ETDEWEB)

    Bauer, Travis LaDell

    2009-12-01

    This paper has three goals. The first is to review Shannon's theory of information and the subsequent advances leading to today's statistics-based text analysis algorithms, showing that the semantics of the text is neglected. The second goal is to propose an extension of Shannon's original model that can take into account semantics, where the 'semantics' of a message is understood in terms of the intended or actual changes on the recipient of a message. The third goal is to propose several lines of research that naturally fall out of the proposed model. Each computational approach to solving some problem rests on an underlying model or set of models that describe how key phenomena in the real world are represented and how they are manipulated. These models are both liberating and constraining. They are liberating in that they suggest a path of development for new tools and algorithms. They are constraining in that they intentionally ignore other potential paths of development. Modern statistical-based text analysis algorithms have a specific intellectual history and set of underlying models rooted in Shannon's theory of communication. For Shannon, language is treated as a stochastic generator of symbol sequences. Shannon himself, subsequently Weaver, and at least one of his predecessors are all explicit in their decision to exclude semantics from their models. This rejection of semantics as 'irrelevant to the engineering problem' is elegant and combined with developments particularly by Salton and subsequently by Latent Semantic Analysis, has led to a whole collection of powerful algorithms and an industry for data mining technologies. However, the kinds of problems currently facing us go beyond what can be accounted for by this stochastic model. Today's problems increasingly focus on the semantics of specific pieces of information. And although progress is being made with the old models, it seems natural to develop or

  8. SOBRE UM ESTUDO DA ENTROPIA DE SHANNON NO CONTEXTO DA MECÂNICA QUÂNTICA: UMA APLICAÇÃO AO OSCILADOR HARMÔNICO LIVRE E CONFINADO

    Directory of Open Access Journals (Sweden)

    Wallas S. Nascimento

    2016-07-01

    Full Text Available The aim of this study was a didactic presentation of the Shannon entropy in the quantum theory context, followed by application to the case of a one-dimensional harmonic oscillator in its ground state, both in the free case and confined case. The study of these systems allows us to highlight notions such as location or delocation of a particle, a possible interpretation that the Shannon entropy can adopt. The Shannon entropy in position (Sx and momentum (Sp spaces were calculated for both systems, beyond the entropic sum (St = Sx + Sp. With this procedure it was possible to identify trends in the behavior of the Shannon entropy (Sx and Sp and test the compliance of the entropic uncertainty relation (St = Sx + Sp ≥ n(1 + ln(π.

  9. Land Use and Land Cover Changes and Urban Sprawl in Riyadh, Saudi Arabia: AN Analysis Using Multi-Temporal Landsat Data and SHANNON'S Entropy Index

    Science.gov (United States)

    Rahman, M. T.

    2016-06-01

    The city of Riyadh, Saudi Arabia has experienced rapid population growth and urban expansion over the past several decades. Due to such growth, the capital city faces many short and long-term social and environmental consequences. In order to monitor and mitigate some of these consequences, it is essential to examine the past changes and historical growth of the city. It is also essential to measure its urban sprawl over the past few decades. The objective of this study is to fulfil these goals. It does so by first examining the historical growth of the city of Riyadh. To do so, Landsat data over the past two and half decades are classified using a combination of supervised and unsupervised classification techniques. Based on the classification results, the study then uses Shannon's Entropy to measure the urban sprawl in the city. The results show that from 1990-2009, the urban built-up area of the city has increased by 90% in the western, south-eastern, and northern parts. The Shannon's entropy values show that the city is dispersing towards the outskirts of the city. The results from this study will assist city planners and government officials to plan, reduce, and perhaps mitigate some of the social and environmental consequences and enable the growth of the city in a sustainable manner in the near future.

  10. Identification and weighting factors influencing the establishment of a single minute exchange of dies in plastic injection industry using VIKOR and Shannon Entropy

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    Gholam Reza Hashemzadeh

    2014-05-01

    Full Text Available Single minute exchange of dies (SMED is one of the most important tools to achieve lean production system. The main idea of this system is to provide methods and to use creative and innovative solutions for continuous improvement. Due to the importance of this issue and its effect on reducing waste during the production process, this study presents a method to identify and to weight factors in the establishment of a single minute exchange of dies in 14 plastic injection factories. In this study, fourteen factories in injection industry were chosen and the factors influencing the implementation of single minute exchange of dies were identified. Following data collection, decision matrix was formed and the weight of each factor was determined by using Shannon Entropy. Then, in order to determine the readiness of factories, VIKOR method was used to rank companies. The results indicate priorities of the following factors in establishing SMED that include: Senior management support, technical capabilities, technical knowledge of staff and consultants, knowledge of mold design, manufacturing infrastructure, team work, combination of the project team work, benchmarking, training, clear understanding of project objectives, rewards and motivation, proper management expectation, project management, teamwork and organizational culture. Practical implications: Due to the factors, Top manager can make the best decision for implementing of SMED technique. This study develops factors influencing on SMED implementation based on Shannon and VIKOR methods for ranking parameters and plants.

  11. On the characterization of vegetation recovery after fire disturbance using Fisher-Shannon analysis and SPOT/VEGETATION Normalized Difference Vegetation Index (NDVI) time series

    Science.gov (United States)

    Lasaponara, Rosa; Lanorte, Antonio; Lovallo, Michele; Telesca, Luciano

    2015-04-01

    Time series can fruitfully support fire monitoring and management from statistical analysis of fire occurrence (Tuia et al. 2008) to danger estimation (lasaponara 2005), damage evaluation (Lanorte et al 2014) and post fire recovery (Lanorte et al. 2014). In this paper, the time dynamics of SPOT-VEGETATION Normalized Difference Vegetation Index (NDVI) time series are analyzed by using the statistical approach of the Fisher-Shannon (FS) information plane to assess and monitor vegetation recovery after fire disturbance. Fisher-Shannon information plane analysis allows us to gain insight into the complex structure of a time series to quantify its degree of organization and order. The analysis was carried out using 10-day Maximum Value Composites of NDVI (MVC-NDVI) with a 1 km × 1 km spatial resolution. The investigation was performed on two test sites located in Galizia (North Spain) and Peloponnese (South Greece), selected for the vast fires which occurred during the summer of 2006 and 2007 and for their different vegetation covers made up mainly of low shrubland in Galizia test site and evergreen forest in Peloponnese. Time series of MVC-NDVI have been analyzed before and after the occurrence of the fire events. Results obtained for both the investigated areas clearly pointed out that the dynamics of the pixel time series before the occurrence of the fire is characterized by a larger degree of disorder and uncertainty; while the pixel time series after the occurrence of the fire are featured by a higher degree of organization and order. In particular, regarding the Peloponneso fire, such discrimination is more evident than in the Galizia fire. This suggests a clear possibility to discriminate the different post-fire behaviors and dynamics exhibited by the different vegetation covers. Reference Lanorte A, R Lasaponara, M Lovallo, L Telesca 2014 Fisher-Shannon information plane analysis of SPOT/VEGETATION Normalized Difference Vegetation Index (NDVI) time series to

  12. Ireland’s tidal energy resource; An assessment of a site in the Bulls Mouth and the Shannon Estuary using measured data

    International Nuclear Information System (INIS)

    O’Rourke, Fergal; Boyle, Fergal; Reynolds, Anthony

    2014-01-01

    Highlights: • This study is concentrated on tidal current energy assessment at two sites in Ireland. • Tidal–current-speed and direction data was measured at a range of depths using ADCPs. • A best-fit power law exponent is proposed based on the measured data from both sites. • Mean power densities, annual energy output and capacity factors at both sites were calculated. - Abstract: The issues associated with Ireland’s over reliance on fossil fuels to meet energy demands have sparked an interest in renewable energy. Renewable energy resources typically are intermittent and vary significantly in energy intensity. Tidal energy however has the advantage of predictability over large time scales and high power densities. A study of Ireland’s tidal–current-energy resource has identified several viable sites. As part of this resource assessment, Acoustic Doppler Current Profilers were installed at two locations along Ireland’s west coast, at a site in the Bulls Mouth and the Shannon Estuary. The Acoustic Doppler Current Profilers measured tidal current speed and direction at 30 min intervals over a 30 day period at a range of depths through the water column. This is the first time the measured data appears in the literature as it has only recently been made public. This paper presents tidal current speed and direction, frequency of occurrence of speed, tidal roses at several depths through the water column, and a comparison of theoretical tidal–current-speed profiles with measured data for a site in the Bulls Mouth and in the Shannon Estuary. The paper compares power density at both sites over a lunar month and also proposes a best fit power law exponent with the measured data through the water column. Finally, the paper presents an energetic performance comparison for a tidal current turbine operating at both sites. The data presented in this paper can be used in the design process to estimate the hydrodynamic and structural performance of a tidal

  13. Shannon Entropy in a European Seabass (Dicentrarchus labrax System during the Initial Recovery Period after a Short-Term Exposure to Methylmercury

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    Harkaitz Eguiraun

    2016-05-01

    Full Text Available Methylmercury (MeHg is an environmental contaminant of increasing relevance as a seafood safety hazard that affects the health and welfare of fish. Non-invasive, on-line methodologies to monitor and evaluate the behavior of a fish system in aquaculture may make the identification of altered systems feasible—for example, due to the presence of agents that compromise their welfare and wholesomeness—and find a place in the implementation of Hazard Analysis and Critical Control Points and Fish Welfare Assurance Systems. The Shannon entropy (SE of a European seabass (Dicentrarchus labrax system has been shown to differentiate MeHg-treated from non-treated fish, the former displaying a lower SE value than the latter. However, little is known about the initial evolution of the system after removal of the toxicant. To help to cover this gap, the present work aims at providing information about the evolution of the SE of a European seabass system during a recuperation period of 11 days following a two-week treatment with 4 µg·MeHg/L. The results indicate that the SE of the system did not show a recovery trend during the examined period, displaying erratic responses with daily fluctuations and lacking a tendency to reach the initial SE values.

  14. Traction Inverter Open Switch Fault Diagnosis Based on Choi–Williams Distribution Spectral Kurtosis and Wavelet-Packet Energy Shannon Entropy

    Directory of Open Access Journals (Sweden)

    Shuangshuang Lin

    2017-09-01

    Full Text Available In this paper, a new approach for fault detection and location of open switch faults in the closed-loop inverter fed vector controlled drives of Electric Multiple Units is proposed. Spectral kurtosis (SK based on Choi–Williams distribution (CWD as a statistical tool can effectively indicate the presence of transients and locations in the frequency domain. Wavelet-packet energy Shannon entropy (WPESE is appropriate for the transient changes detection of complex non-linear and non-stationary signals. Based on the analyses of currents in normal and fault conditions, SK based on CWD and WPESE are combined with the DC component method. SK based on CWD and WPESE are used for the fault detection, and the DC component method is used for the fault localization. This approach can diagnose the specific locations of faulty Insulated Gate Bipolar Transistors (IGBTs with high accuracy, and it requires no additional devices. Experiments on the RT-LAB platform are carried out and the experimental results verify the feasibility and effectiveness of the diagnosis method.

  15. Review of Case Studies for Quantitative Reasoning: A Casebook of Media Articles by Bernard L. Madison, Stuart Boersma, Caren L. Diefenderfer, and Shannon W. Dingman

    Directory of Open Access Journals (Sweden)

    Samuel L. Tunstall

    2015-07-01

    Full Text Available Bernard L. Madison, Stuart Boersma, Caren L. Diefenderfer, and Shannon W. Dingman. Case Studies for Quantitative Reasoning: A Casebook of Media Articles (Pearson Learning Solutions, 2012. 215 pp. ISBN 9781256512875. Concisely organized and timely to a tee, Case Studies for Quantitative Reasoning contains a wealth of articles and exercises to promote higher-order thinking in any course where quantitative literacy is a goal. The text is a self-contained package complete with just enough mathematics to ensure that all students can join in. It contains a total of twenty-four case studies, each of which highlights how numbers appear in day-to-day media. The text is broken into six broad mathematical topics, each of which includes any background mathematics necessary for reading. Each individual study includes warm-up exercises and follow-up questions that demand critical thinking. Notwithstanding the elementary mathematics prerequisite to read the text, the topics and questions are sufficiently challenging to keep a class – and accompanying instructor – engaged for an entire semester.

  16. Non-equilibrium steady states: maximization of the Shannon entropy associated with the distribution of dynamical trajectories in the presence of constraints

    International Nuclear Information System (INIS)

    Monthus, Cécile

    2011-01-01

    Filyokov and Karpov (1967 Inzh.-Fiz. Zh. 13 624) have proposed a theory of non-equilibrium steady states in direct analogy with the theory of equilibrium states: the principle is to maximize the Shannon entropy associated with the probability distribution of dynamical trajectories in the presence of constraints, including the macroscopic current of interest, via the method of Lagrange multipliers. This maximization leads directly to the generalized Gibbs distribution for the probability distribution of dynamical trajectories, and to some fluctuation relation of the integrated current. The simplest stochastic dynamics where these ideas can be applied are discrete-time Markov chains, defined by transition probabilities W i→j between configurations i and j: instead of choosing the dynamical rules W i→j a priori, one determines the transition probabilities and the associate stationary state that maximize the entropy of dynamical trajectories with the other physical constraints that one wishes to impose. We give a self-contained and unified presentation of this type of approach, both for discrete-time Markov chains and for continuous-time master equations. The obtained results are in full agreement with the Bayesian approach introduced by Evans (2004 Phys. Rev. Lett. 92 150601) under the name 'Non-equilibrium Counterpart to detailed balance', and with the 'invariant quantities' derived by Baule and Evans (2008 Phys. Rev. Lett. 101 240601), but provide a slightly different perspective via the formulation in terms of an eigenvalue problem

  17. Comparison of background EEG activity of different groups of patients with idiopathic epilepsy using Shannon spectral entropy and cluster-based permutation statistical testing.

    Directory of Open Access Journals (Sweden)

    Jose Antonio Urigüen

    Full Text Available Idiopathic epilepsy is characterized by generalized seizures with no apparent cause. One of its main problems is the lack of biomarkers to monitor the evolution of patients. The only tools they can use are limited to inspecting the amount of seizures during previous periods of time and assessing the existence of interictal discharges. As a result, there is a need for improving the tools to assist the diagnosis and follow up of these patients. The goal of the present study is to compare and find a way to differentiate between two groups of patients suffering from idiopathic epilepsy, one group that could be followed-up by means of specific electroencephalographic (EEG signatures (intercritical activity present, and another one that could not due to the absence of these markers. To do that, we analyzed the background EEG activity of each in the absence of seizures and epileptic intercritical activity. We used the Shannon spectral entropy (SSE as a metric to discriminate between the two groups and performed permutation-based statistical tests to detect the set of frequencies that show significant differences. By constraining the spectral entropy estimation to the [6.25-12.89 Hz range, we detect statistical differences (at below 0.05 alpha-level between both types of epileptic patients at all available recording channels. Interestingly, entropy values follow a trend that is inversely related to the elapsed time from the last seizure. Indeed, this trend shows asymptotical convergence to the SSE values measured in a group of healthy subjects, which present SSE values lower than any of the two groups of patients. All these results suggest that the SSE, measured in a specific range of frequencies, could serve to follow up the evolution of patients suffering from idiopathic epilepsy. Future studies remain to be conducted in order to assess the predictive value of this approach for the anticipation of seizures.

  18. Estudo da Interação entre o Sistema Cardiovascular e o Respiratório à Luz da Teoria da Informação de Shannon

    OpenAIRE

    Cristine Brasileiro Valença, Anelle

    2006-01-01

    Estuda-se a dinâmica do sistema cardiorespiratório à luz da Teoria de Shannon. O estudo tem dois suportes metodológicos, um é o estudo de dois osciladores de van der Pol acoplados de diferentes maneiras e o outro é a ferramenta estatística, Informação Mútua, da Teoria da Informação de Shannon. Faz-se, primeiramente, uma revisão da fisiologia dos dois sistemas: o cardiovascular e o respiratório. Explora-se a interação entre a freqüência respiratória e a freqüência cardíaca como ...

  19. Application of a novel measure of EEG non-stationarity as 'Shannon- entropy of the peak frequency shifting' for detecting residual abnormalities in concussed individuals.

    Science.gov (United States)

    Cao, Cheng; Slobounov, Semyon

    2011-07-01

    The aim of this report was to propose a novel measure of non-stationarity of EEG signals, named Shannon- entropy of the peak frequency shifting (SEPFS). The feasibility of this method was documented comparing this measure with traditional time domain assessment of non-stationarity and its application to EEG data sets obtained from student-athletes before and after suffering a single episode of mild traumatic brain injury (mTBI) with age-matched normal controls. Instead of assessing the power density distribution on the time-frequency plane, like previously proposed measures of signal non-stationarity, this new measure is based on the shift of the dominant frequency of the EEG signal over time. We applied SEPFS measure to assess the properties of EEG non-stationarity in subjects before and shortly after they suffered mTBI. Student-athletes at high risk for mTBI (n=265) were tested prior to concussive episodes as a baseline. From this subject pool, 30 athletes who suffered from mTBI were retested on day 30 post-injury. Additional subjects pool (student-athletes without history of concussion, n=30) were recruited and test-re-tested within the same 30 day interval. Thirty-two channels EEG signals were acquired in sitting eyes closed condition. The results showed that the SEPFS values significantly decreased in subjects suffering from mTBI. Specifically, reduced EEG non-stationarity was observed in occipital, temporal and central brain areas, indicating the possibility of residual brain dysfunctions in concussed individuals. A similar but less statistically significant trend was observed using traditional time domain analysis of EEG non-stationarity. The proposed measure has at least two merits of interest: (1) it is less affected by the limited resolution of time-frequency representation of the EEG signal; (2) it takes into account the neural characteristics of the EEG signal that have not been considered in previously proposed measures of non-stationarity. This new

  20. New Markov-Shannon Entropy models to assess connectivity quality in complex networks: from molecular to cellular pathway, Parasite-Host, Neural, Industry, and Legal-Social networks.

    Science.gov (United States)

    Riera-Fernández, Pablo; Munteanu, Cristian R; Escobar, Manuel; Prado-Prado, Francisco; Martín-Romalde, Raquel; Pereira, David; Villalba, Karen; Duardo-Sánchez, Aliuska; González-Díaz, Humberto

    2012-01-21

    Graph and Complex Network theory is expanding its application to different levels of matter organization such as molecular, biological, technological, and social networks. A network is a set of items, usually called nodes, with connections between them, which are called links or edges. There are many different experimental and/or theoretical methods to assign node-node links depending on the type of network we want to construct. Unfortunately, the use of a method for experimental reevaluation of the entire network is very expensive in terms of time and resources; thus the development of cheaper theoretical methods is of major importance. In addition, different methods to link nodes in the same type of network are not totally accurate in such a way that they do not always coincide. In this sense, the development of computational methods useful to evaluate connectivity quality in complex networks (a posteriori of network assemble) is a goal of major interest. In this work, we report for the first time a new method to calculate numerical quality scores S(L(ij)) for network links L(ij) (connectivity) based on the Markov-Shannon Entropy indices of order k-th (θ(k)) for network nodes. The algorithm may be summarized as follows: (i) first, the θ(k)(j) values are calculated for all j-th nodes in a complex network already constructed; (ii) A Linear Discriminant Analysis (LDA) is used to seek a linear equation that discriminates connected or linked (L(ij)=1) pairs of nodes experimentally confirmed from non-linked ones (L(ij)=0); (iii) the new model is validated with external series of pairs of nodes; (iv) the equation obtained is used to re-evaluate the connectivity quality of the network, connecting/disconnecting nodes based on the quality scores calculated with the new connectivity function. This method was used to study different types of large networks. The linear models obtained produced the following results in terms of overall accuracy for network reconstruction

  1. Medición de la diversidad comercial minorista en áreas urbanas a través del uso de los índices de Shannon-Weaver y de Ullman-Dacey

    Directory of Open Access Journals (Sweden)

    Aguilera Ontiveros, Antonio

    2014-12-01

    Full Text Available The diversity indices of Shannon-Weaver and Ullman-Dacey are used to measure retail commercial diversity of the two main centers of economic activity in the metropolitan area of San Luis Potosi, Mexico. We show how was defined the study area, the method of obtaining data using governmental databases, how we worked the data for use in the calculation of the indices. Finally, we discuss the results and made reflections on urban and economic planning for the study area.Los índices de Shannon-Weaver y de Ullman-Dacey son usados para medir la diversidad comercial minorista de los dos principales centros de actividad económica de la zona metropolitana de San Luis Potosí, México. Se muestra la forma en que se realizó la definición del área de estudio, el procedimiento de obtención de los datos a través del uso de bases de datos gubernamentales, el modo en que se trabajaron los datos para usarlos en los cálculos de los índices. Por último, se realiza una discusión sobre los resultados y se hacen reflexiones en materia de planeación urbana y económica para el área de estudio. [fr] Les indices de Shannon-Weaver et d’Ullman-Dacey sont utilisés pour mesurer la diversité du commerce de détail dans les deux principaux centres d’activité économique de la zone métropolitaine de San Luis Potosí, Mexique. On montre la façon dont on a défini la délimitation du milieu d’étude, le procédé d’obtention des données en utilisant des bases de données gouvernementales et comment les données ont été analysées et utilisées pour calculer les indices. Pour finir, les résultats sont soumis à discussion et des éléments de réflexion sont proposés concernant la planification urbaine et économique du milieu d’étude.

  2. Shannon Lodge Nursing Home, Rooskey, Roscommon.

    LENUS (Irish Health Repository)

    O'Connor, Mairead

    2014-08-01

    Participation in organized cervical cancer screening has declined recently. While research has focussed on barriers to screening participation, less attention has been paid to what motivates women to attend. Moreover, little is known about health care provider\\/practitioner-level barriers and facilitators to participation. Better understanding of these issues could help inform strategies to improve participation.

  3. Assessment of an air pollution monitoring network to generate urban air pollution maps using Shannon information index, fuzzy overlay, and Dempster-Shafer theory, A case study: Tehran, Iran

    Science.gov (United States)

    Pahlavani, Parham; Sheikhian, Hossein; Bigdeli, Behnaz

    2017-10-01

    Air pollution assessment is an imperative part of megacities planning and control. Hence, a new comprehensive approach for air pollution monitoring and assessment was introduced in this research. It comprises of three main sections: optimizing the existing air pollutant monitoring network, locating new stations to complete the coverage of the existing network, and finally, generating an air pollution map. In the first section, Shannon information index was used to find less informative stations to be candidate for removal. Then, a methodology was proposed to determine the areas which are not sufficiently covered by the current network. These areas are candidates for establishing new monitoring stations. The current air pollution monitoring network of Tehran was used as a case study, where the air pollution issue has been worsened due to the huge population, considerable commuters' absorption and topographic barriers. In this regard, O3, NO, NO2, NOx, CO, PM10, and PM2.5 were considered as the main pollutants of Tehran. Optimization step concluded that all the 16 active monitoring stations should be preserved. Analysis showed that about 35% of the Tehran's area is not properly covered by monitoring stations and about 30% of the area needs additional stations. The winter period in Tehran always faces the most severe air pollution in the year. Hence, to produce the air pollution map of Tehran, three-month of winter measurements of the mentioned pollutants, repeated for five years in the same period, were selected and extended to the entire area using the kriging method. Experts specified the contribution of each pollutant in overall air pollution. Experts' rankings aggregated by a fuzzy-overlay process. Resulted maps characterized the study area with crucial air pollution situation. According to the maps, more than 45% of the city area faced high pollution in the study period, while only less than 10% of the area showed low pollution. This situation confirms the need

  4. Comparação da dimensão fractal e entropia de Shannon em miócitos de ratos submetidos à cardioplegia utilizando solução histidina-triptofano-cetoglutarato e histidina-triptofano com glutamato

    Directory of Open Access Journals (Sweden)

    Marcos Aurélio Barboza de Oliveira

    2014-04-01

    Full Text Available Introdução: As soluções que provocam parada cardíaca eletiva estão em constante evolução, porém, o composto ideal ainda não foi encontrado. Os autores comparam uma nova solução cardioplégica com histidina-triptofano-glutamato (Grupo 2 com histidina-triptofano-cetoglutarato (Grupo 1 em modelo de coração isolado de rato. Objetivo: Quantificar a dimensão fractal e entropia de Shannon em miócitos de rato submetidos à cardioplegia utilizando solução histidina-triptofano com glutamato em modelo experimental, considerando-se os marcadores caspase, IL-8 e Ki-67. Métodos: Vinte ratos machos de raça Wistar foram anestesiados e heparinizados. O tórax foi aberto, realizado cardiectomia e infundido 40 ml/Kg de solução cardioplégica apropriada. Os corações foram mantidos por 2 horas na mesma solução a 4ºC e, após esse período, colocados em aparato de Langendorff por 30 minutos com solução de Ringer Locke. Foram feitas análises imunohistoquímicas para caspase, IL-8 e KI-67. Resultados: A dimensão fractal e a entropia de Shannon dos corações submetidos à parada cardíaca eletiva nos grupos 1 e 2 não foram diferentes. Conclusão: A quantidade de informações avaliada pela entropia de Shannon e a distribuição das mesmas (dada pela dimensão fractal nas lâminas de coração de rato submetidas à cardioplegia com solução histidina-triptofano-acetoglutarato ou histidina-triptofano-glutamato não foram diferentes, o que mostra que a solução de histidina-triptofano-glutamato é tão boa quanto a histidina-triptofano-cetoglutarato na preservação dos miócitos em modelo de coração isolado de rato.

  5. Shannon Entropy of Ammonia Volatilization from Fertilized Agricultural Soils

    Science.gov (United States)

    The economic loss of ammonia (NH3) volatilization from chemical N fertilizers applied to farmlands worldwide is 11.6 billion US dollars per year. The economic impact of negative environmental effects resulted from NH3 volatilization, i.e., formation of potent greenhouse gas (N2O) and PM2.5, is diffi...

  6. Forecasting flood-prone areas using Shannon's entropy model

    Indian Academy of Sciences (India)

    2Department of Water Engineering, Faculty of Agriculture, Lorestan University, ... decision tree methods for determining flood sus- .... a system to prevent disorder, instability, distur- ..... using support vector machine and GIS at the Golestan.

  7. St Patrick's Community Hospital, Summerhill, Carrick on Shannon, Leitrim.

    LENUS (Irish Health Repository)

    Kissling, E

    2013-01-01

    Within the Influenza Monitoring Vaccine Effectiveness in Europe (I-MOVE) project we conducted a multicentre case–control study in eight European Union (EU) Member States to estimate the 2011\\/12 influenza vaccine effectiveness against medically attended influenza-like illness (ILI) laboratory-confirmed as influenza A(H3) among the vaccination target groups. Practitioners systematically selected ILI \\/ acute respiratory infection patients to swab within seven days of symptom onset. We restricted the study population to those meeting the EU ILI case definition and compared influenza A(H3) positive to influenza laboratory-negative patients. We used logistic regression with study site as fixed effect and calculated adjusted influenza vaccine effectiveness (IVE), controlling for potential confounders (age group, sex, month of symptom onset, chronic diseases and related hospitalisations, number of practitioner visits in the previous year). Adjusted IVE was 25% (95% confidence intervals (CI): -6 to 47) among all ages (n=1,014), 63% (95% CI: 26 to 82) in adults aged between 15 and 59 years and 15% (95% CI: -33 to 46) among those aged 60 years and above. Adjusted IVE was 38% (95%CI: -8 to 65) in the early influenza season (up to week 6 of 2012) and -1% (95% CI: -60 to 37) in the late phase. The results suggested a low adjusted IVE in 2011\\/12. The lower IVE in the late season could be due to virus changes through the season or waning immunity. Virological surveillance should be enhanced to quantify change over time and understand its relation with duration of immunological protection. Seasonal influenza vaccines should be improved to achieve acceptable levels of protection.

  8. Measurement, Nyquist and Shannon: a view of PMU metrology

    Energy Technology Data Exchange (ETDEWEB)

    Kirkham, Harold; Albu, Mihaela

    2017-03-23

    It is generally understood that in a (digital) measuring system, attention must be paid to the criterion usually identified with the name Nyquist. The paper shows that there is no such a priori requirement. The observations of Nyquist are examined: some may seem unfamiliar. Sampling and measurement are described as different activities. A link to Information Theory is discussed.

  9. St. Patrick's Community Hospital, Summerhill, Carrick on Shannon, Leitrim

    LENUS (Irish Health Repository)

    Fitzmaurice, Karen

    2012-02-01

    BACKGROUND AND AIMS: CD8 T cells are central to the control of hepatitis C virus (HCV) although the key features of a successful CD8 T cell response remain to be defined. In a cohort of Irish women infected by a single source, a strong association between viral clearance and the human lecucocyte (HLA)-A*03 allele has been described, and the aim of this study was to define the protective nature of the associated CD8 T cell response. METHODS: A sequence-led approach was used to identify HLA-A*03-restricted epitopes. We examine the CD8 T cell response associated with this gene and address the likely mechanism underpinning this protective effect in this special cohort, using viral sequencing, T cell assays and analysis of fitness of viral mutants. RESULTS: A strong \\'HLA footprint\\' in a novel NS3 epitope (TVYHGAGTK) was observed. A lysine (K) to arginine (R) substitution at position 9 (K1088R) was seen in a significant number of A*03-positive patients (9\\/12) compared with the control group (1\\/33, p=0.0003). Threonine (T) was also substituted with alanine (A) at position 8 (T1087A) more frequently in A*03-positive patients (6\\/12) compared with controls (2\\/33, p=0.01), and the double substitution of TK to AR was also observed predominantly in HLA-A*03-positive patients (p=0.004). Epitope-specific CD8 T cell responses were observed in 60% of patients three decades after exposure and the mutants selected in vivo impacted on recognition in vitro. Using HCV replicons matched to the viral sequences, viral fitness was found to be markedly reduced by the K1088R substitution but restored by the second substitution T1087A. CONCLUSIONS: It is proposed that at least part of the protective effect of HLA-A*03 results from targeting of this key epitope in a functional site: the requirement for two mutations to balance fitness and escape provides an initial host advantage. This study highlights the potential protective impact of common HLA-A alleles against persistent viruses, with important implications for HCV vaccine studies.

  10. Distinguishability of quantum states and shannon complexity in quantum cryptography

    Science.gov (United States)

    Arbekov, I. M.; Molotkov, S. N.

    2017-07-01

    The proof of the security of quantum key distribution is a rather complex problem. Security is defined in terms different from the requirements imposed on keys in classical cryptography. In quantum cryptography, the security of keys is expressed in terms of the closeness of the quantum state of an eavesdropper after key distribution to an ideal quantum state that is uncorrelated to the key of legitimate users. A metric of closeness between two quantum states is given by the trace metric. In classical cryptography, the security of keys is understood in terms of, say, the complexity of key search in the presence of side information. In quantum cryptography, side information for the eavesdropper is given by the whole volume of information on keys obtained from both quantum and classical channels. The fact that the mathematical apparatuses used in the proof of key security in classical and quantum cryptography are essentially different leads to misunderstanding and emotional discussions [1]. Therefore, one should be able to answer the question of how different cryptographic robustness criteria are related to each other. In the present study, it is shown that there is a direct relationship between the security criterion in quantum cryptography, which is based on the trace distance determining the distinguishability of quantum states, and the criterion in classical cryptography, which uses guesswork on the determination of a key in the presence of side information.

  11. A subjective supply–demand model: the maximum Boltzmann/Shannon entropy solution

    International Nuclear Information System (INIS)

    Piotrowski, Edward W; Sładkowski, Jan

    2009-01-01

    The present authors have put forward a projective geometry model of rational trading. The expected (mean) value of the time that is necessary to strike a deal and the profit strongly depend on the strategies adopted. A frequent trader often prefers maximal profit intensity to the maximization of profit resulting from a separate transaction because the gross profit/income is the adopted/recommended benchmark. To investigate activities that have different periods of duration we define, following the queuing theory, the profit intensity as a measure of this economic category. The profit intensity in repeated trading has a unique property of attaining its maximum at a fixed point regardless of the shape of demand curves for a wide class of probability distributions of random reverse transactions (i.e. closing of the position). These conclusions remain valid for an analogous model based on supply analysis. This type of market game is often considered in research aiming at finding an algorithm that maximizes profit of a trader who negotiates prices with the Rest of the World (a collective opponent), possessing a definite and objective supply profile. Such idealization neglects the sometimes important influence of an individual trader on the demand/supply profile of the Rest of the World and in extreme cases questions the very idea of demand/supply profile. Therefore we put forward a trading model in which the demand/supply profile of the Rest of the World induces the (rational) trader to (subjectively) presume that he/she lacks (almost) all knowledge concerning the market but his/her average frequency of trade. This point of view introduces maximum entropy principles into the model and broadens the range of economic phenomena that can be perceived as a sort of thermodynamical system. As a consequence, the profit intensity has a fixed point with an astonishing connection with Fibonacci classical works and looking for the quickest algorithm for obtaining the extremum of a convex function: the profit intensity reaches its maximum when the probability of transaction is given by the golden ratio rule (√5-1)/2. This condition sets a sharp criterion of validity of the model and can be tested with real market data

  12. Detecting dynamical changes in time series by using the Jensen Shannon divergence

    Science.gov (United States)

    Mateos, D. M.; Riveaud, L. E.; Lamberti, P. W.

    2017-08-01

    Most of the time series in nature are a mixture of signals with deterministic and random dynamics. Thus the distinction between these two characteristics becomes important. Distinguishing between chaotic and aleatory signals is difficult because they have a common wide band power spectrum, a delta like autocorrelation function, and share other features as well. In general, signals are presented as continuous records and require to be discretized for being analyzed. In this work, we introduce different schemes for discretizing and for detecting dynamical changes in time series. One of the main motivations is to detect transitions between the chaotic and random regime. The tools here used here originate from the Information Theory. The schemes proposed are applied to simulated and real life signals, showing in all cases a high proficiency for detecting changes in the dynamics of the associated time series.

  13. Evaluation of Combined Heat and Power (CHP Systems Using Fuzzy Shannon Entropy and Fuzzy TOPSIS

    Directory of Open Access Journals (Sweden)

    Fausto Cavallaro

    2016-06-01

    Full Text Available Combined heat and power (CHP or cogeneration can play a strategic role in addressing environmental issues and climate change. CHP systems require less fuel than separate heat and power systems in order to produce the same amount of energy saving primary energy, improving the security of the supply. Because less fuel is combusted, greenhouse gas emissions and other air pollutants are reduced. If we are to consider the CHP system as “sustainable”, we must include in its assessment not only energetic performance but also environmental and economic aspects, presenting a multicriteria issue. The purpose of the paper is to apply a fuzzy multicriteria methodology to the assessment of five CHP commercial technologies. Specifically, the combination of the fuzzy Shannon’s entropy and the fuzzy Technique for Order of Preference by Similarity to Ideal Solution (TOPSIS approach will be tested for this purpose. Shannon’s entropy concept, using interval data such as the α-cut, is a particularly suitable technique for assigning weights to criteria—it does not require a decision-making (DM to assign a weight to the criteria. To rank the proposed alternatives, a fuzzy TOPSIS method has been applied. It is based on the principle that the chosen alternative should be as close as possible to the positive ideal solution and be as far as possible from the negative ideal solution. The proposed approach provides a useful technical–scientific decision-making tool that can effectively support, in a consistent and transparent way, the assessment of various CHP technologies from a sustainable point of view.

  14. 76 FR 45864 - Shannon L. Gallentine, D.P.M.; Denial of Application

    Science.gov (United States)

    2011-08-01

    ... a bonafide doctor-patient relationship. See Kamir Garces-Mejias, 72 FR 54931, 54935 (2007); United...] also bars doctors from peddling to patients who crave the drugs for those prohibited uses.'' Gonzales v... the CSA, it is fundamental that a practitioner must establish and maintain a bonafide doctor-patient...

  15. Geologic map of the Montauk quadrangle, Dent, Texas, and Shannon Counties, Missouri

    Science.gov (United States)

    Weary, David J.

    2015-04-30

    The Montauk 7.5-minute quadrangle is located in south-central Missouri within the Salem Plateau region of the Ozark Plateaus physiographic province. About 2,000 feet (ft) of flat-lying to gently dipping lower Paleozoic sedimentary rocks, mostly dolomite, chert, sandstone, and orthoquartzite, overlie Mesoproterozoic igneous basement rocks. Unconsolidated residuum, colluvium, terrace deposits, and alluvium overlie the sedimentary rocks. Numerous karst features, such as caves, springs, and sinkholes, have formed in the carbonate rocks. Many streams are spring fed. The topography is a dissected karst plain with elevations ranging from approximately 830 ft where the Current River exits the middle-eastern edge of the quadrangle to about 1,320 ft in sec. 16, T. 31 N., R. 7 W., in the southwestern part of the quadrangle. The most prominent physiographic features within the quadrangle are the deeply incised valleys of the Current River and its major tributaries located in the center of the map area. The Montauk quadrangle is named for Montauk Springs, a cluster of several springs that resurge in sec. 22, T. 32 N., R. 7 W. These springs supply clean, cold water for the Montauk Fish Hatchery, and the addition of their flow to that of Pigeon Creek produces the headwaters of the Current River, the centerpiece of the Ozark National Scenic Riverways park. Most of the land in the quadrangle is privately owned and used primarily for grazing cattle and horses and growing timber. A smaller portion of the land within the quadrangle is publicly owned by either Montauk State Park or the Ozark National Scenic Riverways (National Park Service). Geologic mapping for this investigation was conducted in 2007 and 2009.

  16. Multiscale Shannon's Entropy Modeling of Orientation and Distance in Steel Fiber Micro-Tomography Data.

    Science.gov (United States)

    Chiverton, John P; Ige, Olubisi; Barnett, Stephanie J; Parry, Tony

    2017-11-01

    This paper is concerned with the modeling and analysis of the orientation and distance between steel fibers in X-ray micro-tomography data. The advantage of combining both orientation and separation in a model is that it helps provide a detailed understanding of how the steel fibers are arranged, which is easy to compare. The developed models are designed to summarize the randomness of the orientation distribution of the steel fibers both locally and across an entire volume based on multiscale entropy. Theoretical modeling, simulation, and application to real imaging data are shown here. The theoretical modeling of multiscale entropy for orientation includes a proof showing the final form of the multiscale taken over a linear range of scales. A series of image processing operations are also included to overcome interslice connectivity issues to help derive the statistical descriptions of the orientation distributions of the steel fibers. The results demonstrate that multiscale entropy provides unique insights into both simulated and real imaging data of steel fiber reinforced concrete.

  17. A subjective supply-demand model: the maximum Boltzmann/Shannon entropy solution

    Science.gov (United States)

    Piotrowski, Edward W.; Sładkowski, Jan

    2009-03-01

    The present authors have put forward a projective geometry model of rational trading. The expected (mean) value of the time that is necessary to strike a deal and the profit strongly depend on the strategies adopted. A frequent trader often prefers maximal profit intensity to the maximization of profit resulting from a separate transaction because the gross profit/income is the adopted/recommended benchmark. To investigate activities that have different periods of duration we define, following the queuing theory, the profit intensity as a measure of this economic category. The profit intensity in repeated trading has a unique property of attaining its maximum at a fixed point regardless of the shape of demand curves for a wide class of probability distributions of random reverse transactions (i.e. closing of the position). These conclusions remain valid for an analogous model based on supply analysis. This type of market game is often considered in research aiming at finding an algorithm that maximizes profit of a trader who negotiates prices with the Rest of the World (a collective opponent), possessing a definite and objective supply profile. Such idealization neglects the sometimes important influence of an individual trader on the demand/supply profile of the Rest of the World and in extreme cases questions the very idea of demand/supply profile. Therefore we put forward a trading model in which the demand/supply profile of the Rest of the World induces the (rational) trader to (subjectively) presume that he/she lacks (almost) all knowledge concerning the market but his/her average frequency of trade. This point of view introduces maximum entropy principles into the model and broadens the range of economic phenomena that can be perceived as a sort of thermodynamical system. As a consequence, the profit intensity has a fixed point with an astonishing connection with Fibonacci classical works and looking for the quickest algorithm for obtaining the extremum of a convex function: the profit intensity reaches its maximum when the probability of transaction is given by the golden ratio rule (\\sqrt {5}-1)/{2} . This condition sets a sharp criterion of validity of the model and can be tested with real market data.

  18. Comparison of multivariate microbial datasets with the Shannon index: An example using enzyme activity from diverse marine environments

    DEFF Research Database (Denmark)

    Steen, Andrew; Ziervogel, K.; Arnosti, C.

    2010-01-01

    Heterotrophic microbial communities contain substantial functional diversity, so studies of community function often generate multivariate data sets. Techniques for data reduction and analysis can help elucidate qualitative differences among sites from multivariate data sets that may be difficult...... of four cases, surface water communities accessed substrates at a more even rate than in deeper waters. The technique could usefully be applied to other types of data obtained in studies of microbial activity and the geochemical effects....

  19. Nuevas citas en Elaeocarpaceae, Escalloniaceae, Orchidaceae, Polypodiaceae y Pteridaceae para la flora de la provincia de Jujuy (Argentina

    Directory of Open Access Journals (Sweden)

    Claudia M. Martín

    2015-07-01

    Full Text Available En el marco de un estudio de flora y vegetación realizado en la Provincia Fitogeográfica de las Yungas, se citan e ilustran siete especies que no habían sido registradas para la provincia de Jujuy (Argentina: Vallea stipularis (Elaeocarpaceae, Escallonia schreiteri (Escalloniaceae, Cyclopogon congestus, Rhinocidium fuchsii, Sacoila secundiflora (Orchidaceae, Campyloneurum angustipaleatum (Polypodiaceae y Adiantum camptorachis (Pteridaceae.

  20. Uuenduslik urbanism planeerimistöötubades: tõlgendav kaardistamine ja projektiivsed kartograafiad = Innovative urbanism through design research workshops: interpretative mapping and projective cartographies / Kelly Shannon

    Index Scriptorium Estoniae

    Shannon, Kelly

    2011-01-01

    Autor kirjeldab linnafoorumite laadseid töötubasid Belgias, mis on muutunud edukaks regiooni maastiku- ja ruumiplaneerimise vahendiks. Kahest planeerimisuuringute töötoast, mis tegelesid Leie jõe piirkonna elluturgutamisega Kortrijki ja Waregemi vahel (2009) ja Marke linnametsa loomisega (2010). Pärnu linnast ja linnafoorumist, kolmest strateegiast, mis arendati foorumil välja Pärnu jõe ja Pärnu lahe vahelise ala jaoks

  1. Analysis of bio-obtainable endocrine disrupting metals in river water and sediment, sewage influent/effluent, sludge, leachate, and concentrated leachate, in the irish midlands shannon catchment.

    LENUS (Irish Health Repository)

    Reid, Antoinette M

    2009-01-01

    The application of an acid digestion and subsequent solid-phase extraction (SPE) procedure were implemented as preliminary treatments prior to quantifying the levels of potentially endocrine disrupting metals (EDMs) in a variety of solid and liquid matrices. These included (solid) river sediment, leachate sediment and sewage sludge and also (liquid) river water, landfill leachate, concentrated leachate, sewage influent, and sewage effluent, sampled in the Irish Midlands. The total concentrations of cobalt (Co), cadmium (Cd), copper (Cu), chromium (Cr), nickel (Ni), lead (Pb), zinc (Zn), and manganese (Mn), after extraction and preconcentration, were determined by atomic absorption spectroscopy (AAS). Mercury (Hg) in sediment and sludge was determined using cold-vapour atomic fluorescence spectroscopy (AFS). For sewage sludge maximum values (mg\\/kg(dw)) of 4700 Ni, 1642 Mn, 100.0 Cd, 3400 Zn, 36.70 Co, 750.0 Pb, 485.8 Cr, and 1003 Cu were determined whilst in leachate sediment, maximum values (mg\\/kg(dw)) of 32.10 Ni, 815.0 Mn, 32.78 Cd, 230.3 Zn, 26.73 Co, 3525 Pb, 124.9 Cr, and 50.13 Cu were found. Over several months, the data showed elevated levels in sewage influents, effluents, and sludges compared to a battery of adjacent river water samples and corresponding sediments. There was a definite trend for target values for sediments to be exceeded, while intervention values were only exceeded for cadmium. Overall the pattern in terms of concentration was sewage > leachate > river matrices. A nonparametric assessment of the effect of sewage treatment method on median metal levels in sludge revealed statistically significant differences at the 95% level of confidence for Co, Cr, and Hg and at the 90% level of confidence for Cd.

  2. A multi-radioisotope approach to dating sedimentation : applying Re-Os organic-rich shale and U-Pb authigenic xenotime dating to the Shannon and Pennine Basins

    OpenAIRE

    Stanislawska, Maja Anna

    2013-01-01

    Sedimentary rocks are the most abundant hthologies on the Earth, covering over 70% of the planet’s surface. Quantitative dating of sedimentary rocks (especially those devoid of fossils) is critical to understanding the past events and rates and duration of processes that shaped the Earth. Recent advances in geochronology of sedimentary rocks, such as Re-Os dating of organic-rich shales and U-Pb dating of authigenic xenotime, allow precise depositional and early diagenetic ages to be obtained,...

  3. RETRACTED: Diagnosis of cervical cancer cell taken from scanning electron and atomic force microscope images of the same patients using discrete wavelet entropy energy and Jensen Shannon, Hellinger, Triangle Measure classifier

    Science.gov (United States)

    Aytac Korkmaz, Sevcan

    2016-05-01

    This article has been retracted: please see Elsevier Policy on Article Withdrawal (http://www.elsevier.com/locate/withdrawalpolicy) This article has been retracted at the request of the Editors. After a thorough investigation, the Publisher has concluded that the Editor was misled into accepting this article based upon the positive advice of at least one suggested reviewer report. The report was submitted from an email account provided by the author, that was later determined not to be the email of the supposed expert reviewer. This manipulation of the peer-review process represents a clear violation of the fundamentals of peer review, our publishing policies, and publishing ethics standards. Apologies are offered to the reviewers whose identities were assumed and to the readers of the journal that this deception was not detected during the submission process.

  4. Töötamine teises maailmas: kultuuri-ülene strateegiline mõtlemine = Working in (an)other world: strategic thinking across cultures / Kelly Shannon, Annelies De Nijs

    Index Scriptorium Estoniae

    Shannon, Kelly

    2010-01-01

    Arengumaad on taaskord muutunud lääne arhitektide/urbanistide jaoks kohaks, mida uurida ja kuhu sekkuda. Märkimisväärne arv haridusasutusi on lõunapoolkera linnade uurimise oma õppekavasse lülitanud. Tutvustatakse uurimisprojekti Canthost, Mekongi deltalinnast Vietnamis. Töö tegi linnaehituse ja arhitektuuri uurimisrühm (OSA) ja sellega seotud disainistuudiod Leuveni ülikoolist Belgias ning Oslo arhitektuuri ja disaini kõrgkooli (AHO) üks stuudio. Põhiprobleemid, millega tegeldi, olid linnade kiirenenud kasv ja kliimamuutus

  5. Consideraciones taxonómicas en especies de Senecio de Argentina Taxonomic considerations on Argentine species of Senecio

    Directory of Open Access Journals (Sweden)

    Roberto D. Tortosa

    2010-12-01

    Full Text Available Se incluyen algunas especies de Senecio de Argentina, reconocidas hasta el presente como especies válidas, en la sinonimia de otras: S. francisci Phil. en S. polygaloides Phil.; S. gymnocaulos Phil. en S. kingii Hook. f.; S. molinae Phil. en S. glaber Less.; S. mustersii Speg. y su var. dentatus Cabrera en S. subumbellatus Phil. Senecio microcephalus Phil. y su var. angustifolius Cabrera son consideradas una variedad de S. subumbellatus y S. schreiteri Cabrera una variedad de S. leucostachys Baker. No se acepta la validez de las variedades Senecio gilliesii Hook. et Arn. var. dasycarpus Cabrera, S. glaber Less. var. pratensis (Phil. Cabrera, S. gnidioides Phil. var. gilvus (Phil. Cabrera, S. kingii Hook. f. var. paradoxus (Albov ex Kurtz Cabrera, S. leucomallus A. Gray var. incisus A. Gray, S. linariifolius Poepp. ex DC. var. heliophytoides (Phil. Reiche y var. subtomentosus Cabrera y de la forma S. perezii Cabrera fo. integerrimus Cabrera.

  6. Geodatabase of fish assemblages for the Florida Coral Reef Tract from 1980-01-01 to 2010-12-31 (NODC Accession 0125569)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset is a point shapefile showing the distribution of species richness, Shannon's Diversity (H), and Shannon's Evennes (J) along the Florida Keys (Key...

  7. Nontuberculous Mycobacteria (NTM)

    Science.gov (United States)

    ... NTM) Infections Program NTM Center of Excellence Our Specialists Shannon H. Kasperbauer, MD + × Shannon H. Kasperbauer, MD ... URL based on the top item shown if (Math.abs(scroll_pos - last_scroll) > $(window).height() * 0. ...

  8. Two Future Ready Librarians Explore Advocacy in and outside of the Library

    Science.gov (United States)

    Miller, Shannon McClintock; Ray, Mark

    2018-01-01

    As part of the national Future Ready Librarians initiative at the Alliance for Excellent Education, Mark Ray and Shannon McClintock Miller serve as national advocates for school library programs and librarians. Mark and Shannon began their library advocacy careers in school libraries. For eight years, Shannon was the district librarian in Van…

  9. Phytochemicals in nutrition and health

    National Research Council Canada - National Science Library

    International Phytochemical Conference (3rd : 2000 : California State Polytechnic University); Meskin, Mark S

    2002-01-01

    ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . JOHN T. ARNASON, SHANNON E. BINNS, and BERNARD R. BAUM 9 CHAPTER 3 Phytochemicals in the Vaccinium Family: Bilberries, Blueberries, and Cranberries . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ....

  10. Kommunikation og sprog

    DEFF Research Database (Denmark)

    Togeby, Ole

    2009-01-01

    Oversigt over hvilke modeller der findes for sprogets rolle i kommunikation: Shannon og Weaver, Saussure, Peirce, Austin, Searle, Grice, Bloomfield, Ogden & Richards, Bateson, Watzlawick, Roman Jakobson,......Oversigt over hvilke modeller der findes for sprogets rolle i kommunikation: Shannon og Weaver, Saussure, Peirce, Austin, Searle, Grice, Bloomfield, Ogden & Richards, Bateson, Watzlawick, Roman Jakobson,...

  11. Kommunikation og sprog

    DEFF Research Database (Denmark)

    Togeby, Ole

    2016-01-01

    Oversigt over hvilke modeller der findes for sprogets rolle i kommunikation: Shannon og Weaver, Saussure, Peirce, Austin, Searle, Grice, Bloomfield, Ogden & Richards, Bateson, Watzlawick, Roman Jakobson,......Oversigt over hvilke modeller der findes for sprogets rolle i kommunikation: Shannon og Weaver, Saussure, Peirce, Austin, Searle, Grice, Bloomfield, Ogden & Richards, Bateson, Watzlawick, Roman Jakobson,...

  12. On the Conditional Rényi Entropy

    NARCIS (Netherlands)

    S. Fehr (Serge); S. Berens (Stefan)

    2014-01-01

    htmlabstractThe Rényi entropy of general order unifies the well-known Shannon entropy with several other entropy notions, like the min-entropy or the collision entropy. In contrast to the Shannon entropy, there seems to be no commonly accepted definition for the conditional Rényi entropy: several

  13. Decoding Codes on Graphs

    Indian Academy of Sciences (India)

    Shannon limit of the channel. Among the earliest discovered codes that approach the. Shannon limit were the low density parity check (LDPC) codes. The term low density arises from the property of the parity check matrix defining the code. We will now define this matrix and the role that it plays in decoding. 2. Linear Codes.

  14. the use of entropy index for gender inequality analysis

    African Journals Online (AJOL)

    DJFLEX

    years old; the share of females in wage employment in the non-agricultural ... have greater access to education than females and the gap in access ... (1) is referred to as Shannon entropy (see Ciuperca and Girardin, 2005). Shannon entropy has the property of symmetry i.e. the measure is unchanged if the outcomes i.

  15. Pärnu jätkab Europan-projektiga / Karin Paulus

    Index Scriptorium Estoniae

    Paulus, Karin, 1975-

    2005-01-01

    2003. aastal toimunud arhitektuurikonkursi Europan 7 võidutöö "Teine loodus" (arhitektid Oana-Maria Bogdan, Kelly Shannon jt.) põhjal valminud eskiisprojektist Pärnus mere ning Tammsaare puiestee vahelisele krundile. Triin Ojari selgitab võistluse olemust. Arhitekt Kelly Shannon külastas Pärnut

  16. Spatial variability of microbial richness and diversity and relationships with soil organic carbon, texture and structure across an agricultural field

    DEFF Research Database (Denmark)

    Naveed, Muhammad; Herath, Lasantha; Møldrup, Per

    2016-01-01

    Highlights •Bacterial richness and Shannon diversity showed strong spatial autocorrelations. •Fungal richness and Shannon diversity did not show any clear spatial autocorrelations. •Ratio of clay to organic carbon was found a best predictor of bacterial richness and diversities. •Soil water...

  17. Zero-contingent entropy of quantum states of a Hydrogen atom

    International Nuclear Information System (INIS)

    Charvot, R.; Majernik, V.

    1996-01-01

    We calculated the zero-contingent entropy for the position of electron in H-atom as a function of its quantum numbers and compared it with the corresponding value of the Shannon entropy. The values of zero-contingent entropy of quantum states of H-atom correlate well with the corresponding values of Shannon's entropy. This points out that, besides the Shannon entropy, the zero-contingent entropy represents an appropriate, and mathematically rather simple, measure of the spreading out of the wave functions in H-atom. (authors)

  18. Drug Response and Resistance in Advanced NF1-Associated Cancers

    Science.gov (United States)

    2014-05-01

    2003;13(1):20-7. 3. Maris JM, Wiersma SR, Mahgoub N, Thompson P, Geyer RJ, Lange BJ, Shannon KM. Monosomy 7 myelodysplastic syndrome and other second...myeloid disorders. N Engl J Med. 1994;330:597-601. 13. Side L, Taylor B, Cayouette M, Conner E, Thompson P, Luce M, Shannon K. Homozygous inactivation of...47. Bollag G, Adler F, elMasry N, McCabe PC, Conner E, Thompson P, McCormick F, Shannon K. Biochemical characterization of a novel KRAS insertional

  19. Nearshore marine fish diversity in southern California using trawl information from the Southern California Coastal Water Research Project.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This is a point file of mean fish diversity within 5 minute grid cells. The Shannon Index of diversity was calculated from Southern California Coastal Water Research...

  20. Nonsymmetric entropy I: basic concepts and results

    OpenAIRE

    Liu, Chengshi

    2006-01-01

    A new concept named nonsymmetric entropy which generalizes the concepts of Boltzman's entropy and shannon's entropy, was introduced. Maximal nonsymmetric entropy principle was proven. Some important distribution laws were derived naturally from maximal nonsymmetric entropy principle.

  1. Browse Title Index

    African Journals Online (AJOL)

    Items 51 - 100 of 286 ... Vol 1 (1998), Bloch's Theorem And Quasiperiodicity In The Theory Of Optical ... Vol 11 (2003), Block Coded Combined Shannon-Fano and GAC Codes ... in Mauritian Transport Sector for Cars and Dual Cars, Abstract PDF.

  2. A measure of mutual divergence among a number of probability distributions

    Directory of Open Access Journals (Sweden)

    J. N. Kapur

    1987-01-01

    major inequalities due to Shannon, Renyi and Holder. The inequalities are then used to obtain some useful results in information theory. In particular measures are obtained to measure the mutual divergence among two or more probability distributions.

  3. Genetic differentiation in Japanese flounder in the Yellow Sea and ...

    African Journals Online (AJOL)

    Jane

    2011-10-05

    Oct 5, 2011 ... diversity (H) and Shannon's information index (I) values were higher in the Qingdao population (P = 72.85% ... Based on the COI sequencing analysis, a total of 25 polymorphic sites ..... and recruitment in the East China Sea.

  4. Prevalência de Anofelinos (Diptera: Culicidae no Crepúsculo Vespertino em Áreas da Usina Hidrelétrica de Itaipu, no Município de Guaíra, Estado do Paraná, Brasil

    Directory of Open Access Journals (Sweden)

    Anthony Érico Guimarães

    1997-11-01

    Full Text Available Systematic collections of anophelines were conducted from November 1994 to August 1995 from 18:00 to 20:00 hr using Shannon traps and human-bait along the lake margin which forms the Itaipu Hydroelectric reservoir, State of Paraná, Brazil. Species prevalence was studied at 15 min intervals. Anopheles albitarsis sensu latu and An. galvaoi, were the most frequently collected mosquitoes. All Anopheles species populations peaked between 18:45 and 19:30 hr. The observations illustrate the existence of a haematophagic activity cycle during the early evening hours: exogenous stimulus (the beginning of sunset ® Shannon trap (light attraction ® human bait (haematophagy ® rest and digestion ® exogenous stimulus ® Shannon trap or surrounding vegetation. The greater abundance of An. albitarsis collected in human-bait and Shannon trap suggests it may be a potential malaria vector in the region

  5. Invertebrate diversity in southern California

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This shapefile displays mean invertebrate diversity within 5 minute grid cells. The Shannon Index of diversity was calculated from Southern California Coastal Water...

  6. The idea factory: Bell Labs and the great age of American innovation

    National Research Council Canada - National Science Library

    Gertner, Jon

    2012-01-01

    .... And at its heart this is a story about a small group of brilliant and eccentric men including Mervin Kelly, Bill Shockley, Claude Shannon, John Pierce, and Bill Baker who spent their careers at Bell Labs...

  7. Fulltext PDF

    Indian Academy of Sciences (India)

    Shannon's special talents in mathematics and engineering were evident right from childhood. His best subjects in ... studied symbolic logic and Boolean algebra, and he now realized ... tributions to the area of artificial intelligence. He wrote a ...

  8. Fish diversity in southern California using scuba surveys in kelp forests.

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Shannon Index of diversity was calculated from diver surveys on kelp beds in Southern California. Kelp diver visual census data was combined for two separate...

  9. 75 FR 81225 - 60-Day Finding for a Petition To Conduct a Status Review of the Eastern North Pacific Population...

    Science.gov (United States)

    2010-12-27

    .... Shannon Bettridge or Dr. Thomas C. Eagle, Office of Protected Resources, Silver Spring, MD, (301) 713... determinations for bowhead whales, Cook Inlet beluga whales, Southern Resident and AT1 killer whales, and two...

  10. Biodiversity patterns, environmental drivers and indicator species on a High-temperature Hydrothermal edifice, mid-Atlantic ridge

    KAUST Repository

    Sarrazin, Jozé e; Legendre, Pierre; Busserolles, Fanny de; Fabri, Marie-Claire; Guilini, Katja; Ivanenko, Viatcheslav N.; Morineaux, Marie; Vanreusel, Ann; Sarradin, Pierre-Marie

    2015-01-01

    . Environmental conditions showed more variation in the warm microhabitats than in the cold microhabitats. In terms of fauna, the warm microhabitats had lower macro- and meiofaunal densities, and lower richness and Shannon diversity than the cold microhabitats

  11. Difference of Sums Containing Products of Binomial Coefficients and Their Logarithms

    National Research Council Canada - National Science Library

    Miller, Allen R; Moskowitz, Ira S

    2005-01-01

    Properties of the difference of two sums containing products of binomial coefficients and their logarithms which arise in the application of Shannon's information theory to a certain class of covert channels are deduced...

  12. Difference of Sums Containing Products of Binomial Coefficients and their Logarithms

    National Research Council Canada - National Science Library

    Miller, Allen R; Moskowitz, Ira S

    2004-01-01

    Properties of the difference of two sums containing products of binomial coefficients and their logarithms which arise in the application of Shannon's information theory to a certain class of covert channels are deduced...

  13. Analysis of genetic diversity and construction of core collection of ...

    African Journals Online (AJOL)

    Jane

    2011-06-03

    Jun 3, 2011 ... Genetic diversity of 73 local mulberry varieties from Shanxi Province were screened using ISSR ... number effective of alleles, Nei's genetic diversity index and Shannon's ...... resources conservation program of the Agriculture.

  14. Improved wavelet packet classification algorithm for vibrational intrusions in distributed fiber-optic monitoring systems

    Science.gov (United States)

    Wang, Bingjie; Pi, Shaohua; Sun, Qi; Jia, Bo

    2015-05-01

    An improved classification algorithm that considers multiscale wavelet packet Shannon entropy is proposed. Decomposition coefficients at all levels are obtained to build the initial Shannon entropy feature vector. After subtracting the Shannon entropy map of the background signal, components of the strongest discriminating power in the initial feature vector are picked out to rebuild the Shannon entropy feature vector, which is transferred to radial basis function (RBF) neural network for classification. Four types of man-made vibrational intrusion signals are recorded based on a modified Sagnac interferometer. The performance of the improved classification algorithm has been evaluated by the classification experiments via RBF neural network under different diffusion coefficients. An 85% classification accuracy rate is achieved, which is higher than the other common algorithms. The classification results show that this improved classification algorithm can be used to classify vibrational intrusion signals in an automatic real-time monitoring system.

  15. Rényi entropy measure of noise-aided information transmission in a binary channel.

    Science.gov (United States)

    Chapeau-Blondeau, François; Rousseau, David; Delahaies, Agnès

    2010-05-01

    This paper analyzes a binary channel by means of information measures based on the Rényi entropy. The analysis extends, and contains as a special case, the classic reference model of binary information transmission based on the Shannon entropy measure. The extended model is used to investigate further possibilities and properties of stochastic resonance or noise-aided information transmission. The results demonstrate that stochastic resonance occurs in the information channel and is registered by the Rényi entropy measures at any finite order, including the Shannon order. Furthermore, in definite conditions, when seeking the Rényi information measures that best exploit stochastic resonance, then nontrivial orders differing from the Shannon case usually emerge. In this way, through binary information transmission, stochastic resonance identifies optimal Rényi measures of information differing from the classic Shannon measure. A confrontation of the quantitative information measures with visual perception is also proposed in an experiment of noise-aided binary image transmission.

  16. African Journal of AIDS Research - Vol 13, No 3 (2014)

    African Journals Online (AJOL)

    Developing and implementing global gender policy to reduce HIV and AIDS in low- and middle -income countries: Policy makers' perspectives · EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT. Shannon Olinyk, Andrew Gibbs, Catherine Campbell.

  17. Diversity of total and functional microbiome of anammox reactors fed with complex and synthetic nitrogen-rich wastewaters

    DEFF Research Database (Denmark)

    Gülay, Arda; Pellicer i Nàcher, Carles; Mutlu, Ayten Gizem

    diversity than the bioreactors treating synthetic wastewaters inferred from observed OTUs0.03, Chao1, Shannon index and Phylogenetic distance calculations. Differences in total microbial diversity agreed with the ecological theory concerning the positive correlation between substrate complexity...

  18. Modelling short- and long-term statistical learning of music as a process of predictive entropy reduction

    DEFF Research Database (Denmark)

    Hansen, Niels Christian; Loui, Psyche; Vuust, Peter

    Statistical learning underlies the generation of expectations with different degrees of uncertainty. In music, uncertainty applies to expectations for pitches in a melody. This uncertainty can be quantified by Shannon entropy from distributions of expectedness ratings for multiple continuations o...

  19. Information entropy of earthquake populations in northeastern Italy and western Slovenia

    Science.gov (United States)

    Bressan, G.; Barnaba, C.; Gentili, S.; Rossi, G.

    2017-10-01

    The spatio-temporal evolution of eight seismicity populations, preceding and following moderate earthquake sequences occurred in NE-Italy and W-Slovenia, are investigated by means of the normalized Shannon entropy and the fractal dimension. Three phases are recognized in the temporal seismic series. The period preceding the mainshock is characterized by oscillations of the Shannon entropy around a nearly constant level and by fluctuations of the fractal dimension. The phase of mainshock and aftershock sequences is characterized by a significant decrease of the Shannon entropy. A simultaneous marked decrease of the fractal dimension is observed in five cases. After the sequence, the entropy recovers the nearly constant trend before the mainshock and the fractal dimension is characterized by fluctuations. We interpreted the fluctuations of the normalized Shannon entropy and the fractal dimension caused by the coupling between the stress field and the mechanical heterogeneities of the crust that results in spatial and temporal fluctuations of the strain energy.

  20. The well-known Pacific El Niño is manifest as an episodic warming ...

    African Journals Online (AJOL)

    spamer

    caused marked changes in precipitation and wind patterns in the ... counterpart in the South-East Atlantic (Shannon et al. 1986). ... The upper ocean temperatures in the Angolan-Namibian coastal waters were anomalously high during.

  1. Plaadid / Lauri Sommer

    Index Scriptorium Estoniae

    Sommer, Lauri, 1973-

    2002-01-01

    Uutest plaatidest Shannon Lawson "Chase The Sun", Queens of the Stone Age "Songs For The Deaf, "Soundtrack. Pulp Fiction", John Adams "Naive and Sentimental Music", paul Weller "Illumination", Avril Lavigne "Let Go", Pasadena "Vastu taevast", nils Landgren "sentimental Journey"

  2. Indicators of the interdisciplinarity of journals: diversity, centrality, and citations

    NARCIS (Netherlands)

    Leydesdorff, L.; Rafols, I.

    2011-01-01

    A citation-based indicator for interdisciplinarity has been missing hitherto among the set of available journal indicators. In this study, we investigate network indicators (betweenness centrality), unevenness indicators (Shannon entropy, the Gini coefficient), and more recently proposed

  3. lutionary research has been on the relationships and structure of ...

    African Journals Online (AJOL)

    denise

    off Namibia have been limited by either a spatial or a temporal scale ... Antarctic Intermediate, deep and bottom waters. (Shannon .... either to include or to ignore rare species (Alatalo ...... Shallow-water Cape hake Merluccius capensis, horse.

  4. 基于混沌PSO或分解的二维Tsallis交叉熵阈值分割(英文)

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The segmentation effect of Tsallis entropy method is superior to that of Shannon entropy method, and the computation speed of two-dimensional Shannon cross entropy method can be further improved by optimization. The existing two-dimensional Tsallis cross entropy method is not the strict two-dimensional extension. Thus two new methods of image thresholding using two-dimensional Tsallis cross entropy based on either Chaotic Particle Swarm Optimization (CPSO) or decomposition are proposed. The former uses CPSO...

  5. Scalable Biomarker Discovery for Diverse High-Dimensional Phenotypes

    Science.gov (United States)

    2015-11-23

    William D. Shannon, Richard R. Sharp, Thomas J. Sharpton, Narmada Shenoy, Nihar U. Sheth, Gina A. Simone, Indresh Singh, Chris S. Smillie, Jack D... William D. Shannon, Richard R. Sharp, Thomas J. Sharpton, Narmada Shenoy, Nihar U. Sheth, Gina A. Simone, Indresh Singh, Christopher S. Smillie, Jack D...Susanne J. Szabo, Jeff Porter, Harri Lähdesmäki, Curtis Huttenhower, Dirk Gevers, Thomas W. Cullen , Mikael Knip, on behalf of the DIABIMMUNE Study Group

  6. An analysis of the armys formal bureaucracy and the impact on acquisition cycles

    Science.gov (United States)

    2017-09-01

    defense acquisition . This research coincides with “oversight” and bureaucracy language in the FY17 NDAA legislation and by the 114th Congress. While...IMPACT ON ACQUISITION CYCLES September 2017 By: William T. Montgomery Shannon L. Laegeler Advisors: Charles Pickar Robert Mortlock...BUREAUCRACY AND THE IMPACT ON ACQUISITION CYCLES 5. FUNDING NUMBERS 6. AUTHOR(S) William T. Montgomery and Shannon L. Laegeler 7. PERFORMING

  7. Model-free stochastic processes studied with q-wavelet-based informational tools

    International Nuclear Information System (INIS)

    Perez, D.G.; Zunino, L.; Martin, M.T.; Garavaglia, M.; Plastino, A.; Rosso, O.A.

    2007-01-01

    We undertake a model-free investigation of stochastic processes employing q-wavelet based quantifiers, that constitute a generalization of their Shannon counterparts. It is shown that (i) interesting physical information becomes accessible in such a way (ii) for special q values the quantifiers are more sensitive than the Shannon ones and (iii) there exist an implicit relationship between the Hurst parameter H and q within this wavelet framework

  8. Temperature multiscale entropy analysis: a promising marker for early prediction of mortality in septic patients

    International Nuclear Information System (INIS)

    Papaioannou, V E; Pneumatikos, I A; Chouvarda, I G; Maglaveras, N K; Baltopoulos, G I

    2013-01-01

    A few studies estimating temperature complexity have found decreased Shannon entropy, during severe stress. In this study, we measured both Shannon and Tsallis entropy of temperature signals in a cohort of critically ill patients and compared these measures with the sequential organ failure assessment (SOFA) score, in terms of intensive care unit (ICU) mortality. Skin temperature was recorded in 21 mechanically ventilated patients, who developed sepsis and septic shock during the first 24 h of an ICU-acquired infection. Shannon and Tsallis entropies were calculated in wavelet-based decompositions of the temperature signal. Statistically significant differences of entropy features were tested between survivors and non-survivors and classification models were built, for predicting final outcome. Significantly reduced Tsallis and Shannon entropies were found in non-survivors (seven patients, 33%) as compared to survivors. Wavelet measurements of both entropy metrics were found to predict ICU mortality better than SOFA, according to a combination of area under the curve, sensitivity and specificity values. Both entropies exhibited similar prognostic accuracy. Combination of SOFA and entropy presented improved the outcome of univariate models. We suggest that reduced wavelet Shannon and Tsallis entropies of temperature signals may complement SOFA in mortality prediction, during the first 24 h of an ICU-acquired infection. (paper)

  9. Upper bounds on quantum uncertainty products and complexity measures

    Energy Technology Data Exchange (ETDEWEB)

    Guerrero, Angel; Sanchez-Moreno, Pablo; Dehesa, Jesus S. [Department of Atomic, Molecular and Nuclear Physics, University of Granada, Granada (Spain); Department of Applied Mathematics, University of Granada, Granada (Spain) and Institute Carlos I for Computational and Theoretical Physics, University of Granada, Granada (Spain); Department of Atomic, Molecular and Nuclear Physics, University of Granada, Granada (Spain); Institute Carlos I for Computational and Theoretical Physics, University of Granada, Granada (Spain)

    2011-10-15

    The position-momentum Shannon and Renyi uncertainty products of general quantum systems are shown to be bounded not only from below (through the known uncertainty relations), but also from above in terms of the Heisenberg-Kennard product . Moreover, the Cramer-Rao, Fisher-Shannon, and Lopez-Ruiz, Mancini, and Calbet shape measures of complexity (whose lower bounds have been recently found) are also bounded from above. The improvement of these bounds for systems subject to spherically symmetric potentials is also explicitly given. Finally, applications to hydrogenic and oscillator-like systems are done.

  10. Nitrite-Oxidizing Bacteria Community Composition and Diversity Are Influenced by Fertilizer Regimes, but Are Independent of the Soil Aggregate in Acidic Subtropical Red Soil.

    Science.gov (United States)

    Han, Shun; Li, Xiang; Luo, Xuesong; Wen, Shilin; Chen, Wenli; Huang, Qiaoyun

    2018-01-01

    Nitrification is the two-step aerobic oxidation of ammonia to nitrate via nitrite in the nitrogen-cycle on earth. However, very limited information is available on how fertilizer regimes affect the distribution of nitrite oxidizers, which are involved in the second step of nitrification, across aggregate size classes in soil. In this study, the community compositions of nitrite oxidizers ( Nitrobacter and Nitrospira ) were characterized from a red soil amended with four types of fertilizer regimes over a 26-year fertilization experiment, including control without fertilizer (CK), swine manure (M), chemical fertilization (NPK), and chemical/organic combined fertilization (MNPK). Our results showed that the addition of M and NPK significantly decreased Nitrobacter Shannon and Chao1 index, while M and MNPK remarkably increased Nitrospira Shannon and Chao1 index, and NPK considerably decreased Nitrospira Shannon and Chao1 index, with the greatest diversity achieved in soils amended with MNPK. However, the soil aggregate fractions had no impact on that alpha-diversity of Nitrobacter and Nitrospira under the fertilizer treatment. Soil carbon, nitrogen and phosphorus in the soil had a significant correlation with Nitrospira Shannon and Chao1 diversity index, while total potassium only had a significant correlation with Nitrospira Shannon diversity index. However, all of them had no significant correlation with Nitrobacter Shannon and Chao1 diversity index. The resistance indices for alpha-diversity indexes (Shannon and Chao1) of Nitrobacter were higher than those of Nitrospira in response to the fertilization regimes. Manure fertilizer is important in enhancing the Nitrospira Shannon and Chao1 index resistance. Principal co-ordinate analysis revealed that Nitrobacter - and Nitrospira -like NOB communities under four fertilizer regimes were differentiated from each other, but soil aggregate fractions had less effect on the nitrite oxidizers community. Redundancy analysis

  11. Biodiversity in a Florida Sandhill Ecosystem

    Directory of Open Access Journals (Sweden)

    Samantha Robertson

    2009-01-01

    Full Text Available This project compares two transects of land in the University of South Florida's Botanical Gardens for their biodiversity. The transects were chosen to represent a Florida sandhill ecosystem and the individual Longleaf Pine, Saw Palmetto, Turkey Oak, Laurel Oak and Live Oak specimens were counted. All other species above waist height were counted as "other"?. Once the individuals were counted, the Simpson's and Shannon-Wiener indices were calculated. Since the Shannon-Wiener index incorporates several diversity characteristics, it is typically more reliable than Simpson's. However, both biodiversity indices agreed that transect B was more diverse than transect A.

  12. Biological indices for classification of water quality around Mae Moh power plant, Thailand

    Directory of Open Access Journals (Sweden)

    Pongsarun Junshum and Siripen Traichaiyaporn

    2007-12-01

    Full Text Available The algal communities and water quality were monitored at eight sampling sites around Mae Moh power plant during January-December 2003. Three biological indices, viz. algal genus pollution index, saprobic index, and Shannon-Weaver index, were adopted to classify the water quality around the power plant in comparison with the measured physico-chemical water quality. The result shows that the Shannon-Weaver diversity index appears to be much more applicable and interpretable for the classification of water quality around the Mae Moh power plant than the algal genus pollution index and the saprobic index.

  13. Drug Response and Resistance in Advanced NF-1-Associated Cancers

    Science.gov (United States)

    2015-07-01

    Neurofibromatosis 1: closing the GAP between mice and men. Current opinion in genetics & development. 2003;13(1):20-7. 3. Maris JM, Wiersma SR, Mahgoub N...13. Side L, Taylor B, Cayouette M, Conner E, Thompson P, Luce M, Shannon K. Homozygous inactivation of the NF1 gene in bone marrow cells from children...1998;7(8):1261-8. 54. Bollag G, Adler F, elMasry N, McCabe PC, Conner E, Thompson P, McCormick F, Shannon K. Biochemical characterization of a novel KRAS

  14. Reflection: Research by Design: Design-Based Research and the Higher Degree Research Student

    Science.gov (United States)

    Kennedy-Clark, Shannon

    2015-01-01

    The article "Research by design: Design-based research and the higher degree research student" (Kennedy-Clark, 2013) appeared in the "Journal of Learning Design" Volume 6, Issue 2 in 2013. Two years on, Shannon Kennedy-Clark reflects upon her original article. Upon being asked to revisit this article the author reflected upon…

  15. Chapter 16: Species Diversity

    African Journals Online (AJOL)

    zargaran

    2012-05-03

    May 3, 2012 ... rarefaction method was recorded in Pardanan, with 28 oak gall wasps species. Furthermore, the highest amount of Gini-Simpson and Shannon entropy index were recorded in Sardasht, while the highest evenness was recorded in Shalmash. Differences in the local distribution of oak species, especially.

  16. Nonsymmetric entropy and maximum nonsymmetric entropy principle

    International Nuclear Information System (INIS)

    Liu Chengshi

    2009-01-01

    Under the frame of a statistical model, the concept of nonsymmetric entropy which generalizes the concepts of Boltzmann's entropy and Shannon's entropy, is defined. Maximum nonsymmetric entropy principle is proved. Some important distribution laws such as power law, can be derived from this principle naturally. Especially, nonsymmetric entropy is more convenient than other entropy such as Tsallis's entropy in deriving power laws.

  17. Extending Entropy Stability Measure To External Debt Structure ...

    African Journals Online (AJOL)

    This study focuses on the measure of stability of external debt using entropy. This is achieved by modifying the conglomerate of Shannon and Boltzmann entropy. This modification rectifies the limitations of these models. Practical illustration of the modified model is also given to justify its use. Journal of Science ...

  18. Extending the Frontier of GIS Applications: Towards Evolving a ...

    African Journals Online (AJOL)

    The accurate mapping of and analysis of urban sprawl has been a major challenge to urban planners. This has links to the shortcomings of known procedures and techniques of analysis that involve the use of the Shannon's entropy and the GIS and Remote Sensing techniques as standalone tools. The search for enhanced ...

  19. On quantum Rényi entropies

    DEFF Research Database (Denmark)

    Müller-Lennert, Martin; Dupont-Dupuis, Fréderic; Szehr, Oleg

    2013-01-01

    The Rényi entropies constitute a family of information measures that generalizes the well-known Shannon entropy, inheriting many of its properties. They appear in the form of unconditional and conditional entropies, relative entropies, or mutual information, and have found many applications in in...

  20. Sinc-function based Network

    DEFF Research Database (Denmark)

    Madsen, Per Printz

    1998-01-01

    The purpose of this paper is to describe a neural network (SNN), that is based on Shannons ideas of reconstruction of a real continuous function from its samples. The basic function, used in this network, is the Sinc-function. Two learning algorithms are described. A simple one called IM...

  1. LDPC Codes--Structural Analysis and Decoding Techniques

    Science.gov (United States)

    Zhang, Xiaojie

    2012-01-01

    Low-density parity-check (LDPC) codes have been the focus of much research over the past decade thanks to their near Shannon limit performance and to their efficient message-passing (MP) decoding algorithms. However, the error floor phenomenon observed in MP decoding, which manifests itself as an abrupt change in the slope of the error-rate curve,…

  2. Repetitive transient extraction for machinery fault diagnosis using multiscale fractional order entropy infogram

    Science.gov (United States)

    Xu, Xuefang; Qiao, Zijian; Lei, Yaguo

    2018-03-01

    The presence of repetitive transients in vibration signals is a typical symptom of local faults of rotating machinery. Infogram was developed to extract the repetitive transients from vibration signals based on Shannon entropy. Unfortunately, the Shannon entropy is maximized for random processes and unable to quantify the repetitive transients buried in heavy random noise. In addition, the vibration signals always contain multiple intrinsic oscillatory modes due to interaction and coupling effects between machine components. Under this circumstance, high values of Shannon entropy appear in several frequency bands or high value of Shannon entropy doesn't appear in the optimal frequency band, and the infogram becomes difficult to interpret. Thus, it also becomes difficult to select the optimal frequency band for extracting the repetitive transients from the whole frequency bands. To solve these problems, multiscale fractional order entropy (MSFE) infogram is proposed in this paper. With the help of MSFE infogram, the complexity and nonlinear signatures of the vibration signals can be evaluated by quantifying spectral entropy over a range of scales in fractional domain. Moreover, the similarity tolerance of MSFE infogram is helpful for assessing the regularity of signals. A simulation and two experiments concerning a locomotive bearing and a wind turbine gear are used to validate the MSFE infogram. The results demonstrate that the MSFE infogram is more robust to the heavy noise than infogram and the high value is able to only appear in the optimal frequency band for the repetitive transient extraction.

  3. Homesick vulture moves into retirement village

    African Journals Online (AJOL)

    2007-03-01

    Mar 1, 2007 ... contact him on (031) 785-2981. Raptor. Rescue is based at the newly opened. African Bird of Prey Centre on the Lion. Park road where other vultures and many species of hawks, owls and eagles are on display. This is also where Hoffman's wife, Shannon, and her team, present daily flying demonstrations.

  4. Conceptual Inadequacy of the Shore and Johnson Axioms for Wide Classes of Complex Systems

    Directory of Open Access Journals (Sweden)

    Constantino Tsallis

    2015-05-01

    Full Text Available It is by now well known that the Boltzmann-Gibbs-von Neumann-Shannon logarithmic entropic functional (\\(S_{BG}\\ is inadequate for wide classes of strongly correlated systems: see for instance the 2001 Brukner and Zeilinger's {\\it Conceptual inadequacy of the Shannon information in quantum measurements}, among many other systems exhibiting various forms of complexity. On the other hand, the Shannon and Khinchin axioms uniquely mandate the BG form \\(S_{BG}=-k\\sum_i p_i \\ln p_i\\; the Shore and Johnson axioms follow the same path. Many natural, artificial and social systems have been satisfactorily approached with nonadditive entropies such as the \\(S_q=k \\frac{1-\\sum_i p_i^q}{q-1}\\ one (\\(q \\in {\\cal R}; \\,S_1=S_{BG}\\, basis of nonextensive statistical mechanics. Consistently, the Shannon 1948 and Khinchine 1953 uniqueness theorems have already been generalized in the literature, by Santos 1997 and Abe 2000 respectively, in order to uniquely mandate \\(S_q\\. We argue here that the same remains to be done with the Shore and Johnson 1980 axioms. We arrive to this conclusion by analyzing specific classes of strongly correlated complex systems that await such generalization.

  5. Entropy factor for randomness quantification in neuronal data

    Czech Academy of Sciences Publication Activity Database

    Rajdl, Kamil; Lánský, Petr; Košťál, Lubomír

    2017-01-01

    Roč. 95, Nov 17 (2017), s. 57-65 ISSN 0893-6080 R&D Projects: GA ČR(CZ) GA15-08066S Institutional support: RVO:67985823 Keywords : variability measure * Shannon entropy * renewal proces * Fano factor Subject RIV: FH - Neurology OBOR OECD: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology Impact factor: 5.287, year: 2016

  6. Intertidal barnacles are not uniformly abundant around the coast of ...

    African Journals Online (AJOL)

    spamer

    Intertidal barnacles are significantly more abundant on the south than on the west ... California Coastal Commission, 3111 Camino del Rio North, Suite 200, San ..... factors that are likely to affect adult growth and sur- .... north-west coast of the U.S.A. (e.g. Dayton 1971, .... SHANNON, L. V. 1985 — The Benguela ecosystem.

  7. Dynamical Languages

    Science.gov (United States)

    Xie, Huimin

    The following sections are included: * Definition of Dynamical Languages * Distinct Excluded Blocks * Definition and Properties * L and L″ in Chomsky Hierarchy * A Natural Equivalence Relation * Symbolic Flows * Symbolic Flows and Dynamical Languages * Subshifts of Finite Type * Sofic Systems * Graphs and Dynamical Languages * Graphs and Shannon-Graphs * Transitive Languages * Topological Entropy

  8. Teater

    Index Scriptorium Estoniae

    2005-01-01

    ASSITEJ Eesti keskus ja VAT Teater kutsuvad kõiki lapsi koos vanematega 19. märtsil terveks päevaks rahvusraamatukogu teatrisaali vaatama tasuta lasteetendusi ; 17. märtsil Rahvusooperis Estonia esietendunud balletist "Shannon Rose".Vanemuises 18. märtsil esieetenduvast tantsulavastusest "Suveöö unenägu"

  9. A Characterization of the Ship-Effect in a Maritime Environment and Special Nuclear Material Detection

    Science.gov (United States)

    2015-05-18

    physics where cosmic radiation interacts preferentially with high atomic number materials to produce additional background radiation. This research...physics where cosmic radiation interacts preferentially with high atomic number materials to produce additional background radiation. A classic...LTC Michael Shannon, Director, J9-NSERC, Defense Threat Reduction Agency IV Table of Contents Abstract

  10. 78 FR 70550 - Announcement of the Board of Directors for the National Environmental Education Foundation

    Science.gov (United States)

    2013-11-26

    ... development. It provides the common ground upon which leaders from business and industry, all levels of..., Miami, FL Wonya Lucas, President, Lucas Strategic Consulting, Atlanta, GA Trish Silber, President..., Washington, DC Shannon Schuyler, Principal, Corporate Responsibility Leader, PricewaterhouseCoopers (PwC...

  11. 78 FR 42069 - Announcement of the Board of Directors for the National Environmental Education Foundation

    Science.gov (United States)

    2013-07-15

    ... (NEEF) was created by Section 10 of Public Law 101-619, the National Environmental Education Act of 1990... development. It provides the common ground upon which leaders from business and industry, all levels of... Board of Trustees. The appointee is Shannon Schuyler, Corporate Responsibility Leader and Senior...

  12. Application of the Benthic Ecosystem Quality Index 2 to benthos in Dutch transitional and coastal waters

    NARCIS (Netherlands)

    Van Loon, W.M.G.M.; Boon, A.R.; Gittenberger, A.; Walvoort, D.J.J.; Lavaleye, M.S.S.; Duineveld, G.C.A.; Verschoor, A.J.

    2015-01-01

    The Benthic Ecosystem Quality Index 2 (BEQI2) is the Dutch multi-metric index (MMI) for assessing the status and trend of benthic invertebrates in transitional and coastal waters for the Water Framework Directive (WFD). It contains the same indicators, i.e. species richness, Shannon index and AMBI,

  13. Application of the Benthic Ecosystem Quality Index 2 to benthos in Dutch transitional and coastal waters

    NARCIS (Netherlands)

    Loon, van W.M.G.M.; Boon, A.R.; Gittenberger, A.; Walvoort, D.J.J.; Lavaleye, M.; Duineveld, G.C.A.; Verschoor, A.J.

    2015-01-01

    The Benthic Ecosystem Quality Index 2 (BEQI2) is the Dutch multi-metric index (MMI) for assessing the status and trend of benthic invertebrates in transitional and coastal waters for the Water Framework Directive (WFD). It contains the same indicators, i.e. species richness, Shannon index and

  14. River Quality Investigations, Part 1: Some Diversity and Biotic Indices.

    Science.gov (United States)

    Hewitt, G.

    1991-01-01

    The following indices for assessing river water quality are described: Shannon-Weiner Diversity Index, Sorenson Quotient of Similarity, Czekanowski's Index of Similarity, Trent Biotic Index, Chandler Score, and Biological Monitoring Working Party Score. Their advantages and disadvantages are outlined. (Author)

  15. Benthic deversity in the Rhine-Meuse estuary

    NARCIS (Netherlands)

    Wolff, W.J.

    1974-01-01

    The benthic diversity of the Rhine-Meuse estuary has been investigated by means of three diversity indices: the Shannon-Weaver information function, an index obtained by SANDERS' rarefaction method and the number of the species per sample. Succession proved to be a very important factor in the

  16. Coding and Quantization in Communications and Microeconomics

    Science.gov (United States)

    Xu, Yun

    2013-01-01

    Since information theory was developed by Claude E. Shannon, in addition to its primary role in communications and networking, it has broadened to find applications in many other areas of science and technology, such as microeconomics, statistics, and neuroscience. This thesis investigates the application of information theoretic viewpoints to two…

  17. Entropy: Order or Information

    Science.gov (United States)

    Ben-Naim, Arieh

    2011-01-01

    Changes in entropy can "sometimes" be interpreted in terms of changes in disorder. On the other hand, changes in entropy can "always" be interpreted in terms of changes in Shannon's measure of information. Mixing and demixing processes are used to highlight the pitfalls in the association of entropy with disorder. (Contains 3 figures.)

  18. Tailored Communication to Enhance Adaptation Across the Breast Cancer Spectrum

    Science.gov (United States)

    2007-10-01

    Manager Geary, Shannon Health Educator Gillespie, Kathleen Research Study Assistant Ginsberg, Barbara Assistant Director Glenn, Melanie Project...Kandadai, Venk Student Intern Kimenour, James Unit Aide Klein , Margaret Health Educator II LaMonica, Stephen Project Manager Leber, Elva Health Educator

  19. Phytoplankton Diversity Effects on Community Biomass and Stability along Nutrient Gradients in a Eutrophic Lake

    Directory of Open Access Journals (Sweden)

    Wang Tian

    2017-01-01

    Full Text Available The relationship between biodiversity and ecosystem functioning is a central issue in ecology, but how this relationship is affected by nutrient stress is still unknown. In this study, we analyzed the phytoplankton diversity effects on community biomass and stability along nutrient gradients in an artificial eutrophic lake. Four nutrient gradients, varying from slightly eutrophic to highly eutrophic states, were designed by adjusting the amount of polluted water that flowed into the lake. Mean phytoplankton biomass, species richness, and Shannon diversity index all showed significant differences among the four nutrient gradients. Phytoplankton community biomass was correlated with diversity (both species richness and Shannon diversity index, varying from positive to negative along the nutrient gradients. The influence of phytoplankton species richness on resource use efficiency (RUE also changed from positive to negative along the nutrient gradients. However, the influence of phytoplankton Shannon diversity on RUE was not significant. Both phytoplankton species richness and Shannon diversity had a negative influence on community turnover (measured as community dissimilarity, i.e., a positive diversity–stability relationship. Furthermore, phytoplankton spatial stability decreased along the nutrient gradients in the lake. With increasing nutrient concentrations, the variability (standard deviation of phytoplankton community biomass increased more rapidly than the average total biomass. Results in this study will be helpful in understanding the phytoplankton diversity effects on ecosystem functioning and how these effects are influenced by nutrient conditions in aquatic ecosystems.

  20. Optimal job splitting in parallel processor sharing queues

    NARCIS (Netherlands)

    Hoekstra, G.; van der Mei, R.D.; Bhulai, S.

    2012-01-01

    The main barrier to the sustained growth of wireless communications is the Shannon limit that applies to the channel capacity. A promising means to realize high-capacity enhancements is the use of multi-path communication solutions to improve reliability and network performance in areas that are

  1. Optimal job splitting in parallel processor sharing queues

    NARCIS (Netherlands)

    G.J. Hoekstra (Gerard); R.D. van der Mei (Rob); S. Bhulai (Sandjai)

    2012-01-01

    htmlabstractThe main barrier to the sustained growth of wireless communications is the Shannon limit that applies to the channel capacity. A promising means to realize high-capacity enhancements is the use of multi-path communication solutions to improve reliability and network performance in

  2. The Ecosystem of Information Retrieval

    Science.gov (United States)

    Rodriguez-Munoz, Jose-Vicente; Martinez-Mendez, Francisco-Javier; Pastor-Sanchez, Juan-Antonio

    2012-01-01

    Introduction: This paper presents an initial proposal for a formal framework that, by studying the metric variables involved in information retrieval, can establish the sequence of events involved and how to perform it. Method: A systematic approach from the equations of Shannon and Weaver to establish the decidability of information retrieval…

  3. 78 FR 29199 - Avani International Group, Inc., Birch Mountain Resources Ltd., Capital Reserve Canada Ltd...

    Science.gov (United States)

    2013-05-17

    ... Mountain Resources Ltd., Capital Reserve Canada Ltd., Dynasty Gaming, Inc. (n/k/a Blue Zen Memorial Parks, Inc.), IXI Mobile, Inc., Laureate Resources & Steel Industries Inc., Millennium Energy Corp., Shannon... a lack of current and accurate information concerning the securities of Dynasty Gaming, Inc. (n/k/a...

  4. Oxfordi ülikool kohtus vaeste diskrimineerimise pärast

    Index Scriptorium Estoniae

    2013-01-01

    Damien Shannon kaebas Oxfordi ülikooli St. Hugh’ kolledži kohtusse: ülikool keeldus teda vastu võtmast, kuna tal ei olnud aktsepteeritavat tõendit selle kohta, et ta suudab tasuda oma õppemaksu ja elamiskulud, kokku 21 000 naela aastas

  5. Resonance – Journal of Science Education | News

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 7; Issue 2. Issue front cover thumbnail Issue back cover thumbnail. Volume 7, Issue 2. February 2002, pages 1-96. pp 1-1 Editorial. Editorial · Amitabh Joshi · More Details Fulltext PDF. pp 2-3 Article-in-a-Box. Claude Elwood Shannon · Priti Shankar.

  6. Information rates of radiation as a photon gas

    NARCIS (Netherlands)

    Martinez, A.

    2008-01-01

    The information rates achievable with a photon-gas model of electromagnetic radiation are studied. At any frequency, information rates over the photon-gas model essentially coincide with the Shannon capacity when the signal-to-noise ratio is below a threshold. Only above the threshold does the

  7. Jensen divergence based on Fisher’s information

    International Nuclear Information System (INIS)

    Sánchez-Moreno, P; Zarzo, A; Dehesa, J S

    2012-01-01

    The measure of Jensen–Fisher divergence between probability distributions is introduced and its theoretical grounds set up. This quantity, in contrast to the remaining Jensen divergences, grasps the fluctuations of the probability distributions because it is controlled by the (local) Fisher information, which is a gradient functional of the distribution. So it is appropriate and informative when studying the similarity of distributions, mainly for those having oscillatory character. The new Jensen–Fisher divergence shares with the Jensen–Shannon divergence the following properties: non-negativity, additivity when applied to an arbitrary number of probability densities, symmetry under exchange of these densities, vanishing under certain conditions and definiteness even when these densities present non-common zeros. Moreover, the Jensen–Fisher divergence is shown to be expressed in terms of the relative Fisher information as the Jensen–Shannon divergence does in terms of the Kullback–Leibler or relative Shannon entropy. Finally, the Jensen–Shannon and Jensen–Fisher divergences are compared for the following three large, non-trivial and qualitatively different families of probability distributions: the sinusoidal, generalized gamma-like and Rakhmanov–Hermite distributions, which are closely related to the quantum-mechanical probability densities of numerous physical systems. (paper)

  8. Weed flora of University of Benin in terms of diversity and richness ...

    African Journals Online (AJOL)

    Weeds are as important as man to himself and its environment. Weed flora in terms of diversity and richness of University of Benin, Ugbowo campus were determined from four habitable parts using two ecological models: Margalef species richness (d) and Shannon-Wiener diversity (H). Primary data were collected from an ...

  9. Prosesterone

    Indian Academy of Sciences (India)

    55 2001 Chemistry Nobel Prize. Conlinuing Importance of Stereochemistry. Mariappan Periasamy. 66 from Shannon to Quantum Information Science. Ideas and Techniques. Rajiah Simon. BOOK REVIEWS. 90 Electrostatics of Atoms and Molecules. G Narahari Sastry. Back Cover. The Ca.Jer picture Illustrates how chiraIHy.

  10. Joining the Video-Game Literacy Club: A Reluctant Mother Tries to Join the "Flow"

    Science.gov (United States)

    Norton-Meier, Lori

    2005-01-01

    The author discusses the influence of video games and other technologies on modern family life, drawing on her own experiences. The implications of digital and other "new" and multiple literacies are described, with reference particularly to the work of Patrick Shannon and James Paul Gee.

  11. Bacterial flora of Dona Paula, India using numerical profiles

    Digital Repository Service at National Institute of Oceanography (India)

    LokaBharathi, P.A.; Nair, S.; Chandramohan, D.

    ). 4) C. E. Shannon and W. Weaver: The math· ematical theory of communication, 1949 Universi·· ty of Illinois Press. 5) R. Margalef: in "Perspective in Ecological Theory" University of Chicago Press, Chicago,. 1968. 6) E. C. Pielou: J. Theor. Bioi., 13...

  12. Intelligent Information Retrieval: Diagnosing Information Need. Part II. Uncertainty Expansion in a Prototype of a Diagnostic IR Tool.

    Science.gov (United States)

    Cole, Charles; Cantero, Pablo; Sauve, Diane

    1998-01-01

    Outlines a prototype of an intelligent information-retrieval tool to facilitate information access for an undergraduate seeking information for a term paper. Topics include diagnosing the information need, Kuhlthau's information-search-process model, Shannon's mathematical theory of communication, and principles of uncertainty expansion and…

  13. Inter simple sequence repeats (ISSR) and random amplified ...

    African Journals Online (AJOL)

    21 of 30 random amplified polymorphic DNA (RAPD) primers produced 220 reproducible bands with average of 10.47 bands per primer and 80.12% of polymorphism. OPR02 primer showed the highest number of effective allele (Ne), Shannon index (I) and genetic diversity (H). Some of the cultivars had specific bands, ...

  14. Fulltext PDF

    Indian Academy of Sciences (India)

    Shannon's land- mark contribution is in his use of probability theory ... be seminal and opened up a new line of thought which ... reduces one's uncertainty about a situation. As Shan- .... Then it would cut costs to encode M I by a single 0 and.

  15. Studies on the distribution of gelatinous zooplankton in the ...

    African Journals Online (AJOL)

    spamer

    boundary to the system (Agenbag and Shannon 1988,. Largier and Boyd 2001), it is not considered to have a profound influence on the specific composition of regional zooplankton (Gibbons et al. 1995, Gibbons and Thibault-Botha 2002, but see Barange et al. 1992,. Emanuel et al. 1992). Indeed, it has been suggested.

  16. Gun Violence and the Meaning of American Schools

    Science.gov (United States)

    Warnick, Bryan R.; Kim, Sang Hyun; Robinson, Shannon

    2015-01-01

    In the United States, targeted school shootings have become a distinct genre of violence. In this essay, Bryan Warnick, Sang Hyun Kim, and Shannon Robinson examine the social meanings that exist in American society that might contribute to this phenomenon, focusing on the question: "Why are schools conceptualized as appropriate places to…

  17. The Quantitative Theory of Information

    DEFF Research Database (Denmark)

    Topsøe, Flemming; Harremoës, Peter

    2008-01-01

    Information Theory as developed by Shannon and followers is becoming more and more important in a number of sciences. The concepts appear to be just the right ones with intuitively appealing operational interpretations. Furthermore, the information theoretical quantities are connected by powerful...

  18. Compositional searching of CpG islands in the human genome

    Science.gov (United States)

    Luque-Escamilla, Pedro Luis; Martínez-Aroza, José; Oliver, José L.; Gómez-Lopera, Juan Francisco; Román-Roldán, Ramón

    2005-06-01

    We report on an entropic edge detector based on the local calculation of the Jensen-Shannon divergence with application to the search for CpG islands. CpG islands are pieces of the genome related to gene expression and cell differentiation, and thus to cancer formation. Searching for these CpG islands is a major task in genetics and bioinformatics. Some algorithms have been proposed in the literature, based on moving statistics in a sliding window, but its size may greatly influence the results. The local use of Jensen-Shannon divergence is a completely different strategy: the nucleotide composition inside the islands is different from that in their environment, so a statistical distance—the Jensen-Shannon divergence—between the composition of two adjacent windows may be used as a measure of their dissimilarity. Sliding this double window over the entire sequence allows us to segment it compositionally. The fusion of those segments into greater ones that satisfy certain identification criteria must be achieved in order to obtain the definitive results. We find that the local use of Jensen-Shannon divergence is very suitable in processing DNA sequences for searching for compositionally different structures such as CpG islands, as compared to other algorithms in literature.

  19. High Entropy Random Selection Protocols

    NARCIS (Netherlands)

    H. Buhrman (Harry); M. Christandl (Matthias); M. Koucky (Michal); Z. Lotker (Zvi); B. Patt-Shamir; M. Charikar; K. Jansen; O. Reingold; J. Rolim

    2007-01-01

    textabstractIn this paper, we construct protocols for two parties that do not trust each other, to generate random variables with high Shannon entropy. We improve known bounds for the trade off between the number of rounds, length of communication and the entropy of the outcome.

  20. Disability Inclusion in the Workplace

    Centers for Disease Control (CDC) Podcasts

    People with disabilities in America are twice as likely to be unemployed than people without disabilities – a fact that can be eliminated. Dr. Shannon Griffin-Blake tells us how we can give people with disabilities an opportunity to thrive in the workforce.

  1. Merchant Seamen Monument

    OpenAIRE

    1991-01-01

    Postcard. Colour photograph of Merchant Seamen Monument. Printed description on reverse "This memorial was erected in remembrance of the merchant seamen from Limerick and the Shannon Estuary Seamen who lost their lives in the course of duty". 1991 Limerick Treaty 300 logo.

  2. Patterning and predicting aquatic macroinvertebrate diversities using artificial neural network

    NARCIS (Netherlands)

    Park, Y.S.; Verdonschot, P.F.M.; Chon, T.S.; Lek, S.

    2003-01-01

    A counterpropagation neural network (CPN) was applied to predict species richness (SR) and Shannon diversity index (SH) of benthic macroinvertebrate communities using 34 environmental variables. The data were collected at 664 sites at 23 different water types such as springs, streams, rivers,

  3. Sadhana | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Home; Journals; Sadhana. P K SAHU. Articles written in Sadhana. Volume 41 Issue 5 May 2016 pp 469-477. An improved method for R-peak detection by using Shannon energy envelope · M RAKSHIT D PANIGRAHY P K SAHU · More Details Abstract Fulltext PDF. R-peaks in electrocardiogram (ECG) play a vital role in ...

  4. Genetic variability and relationship between MT-1 elephant grass ...

    Indian Academy of Sciences (India)

    tein, 28 to 40 per cent in crude fiber, 10 to 16 per cent in ash, 0.9 ... and forage production in the alley cropping system of agro- ... Keywords. genetic diversity; cluster analysis; DNA markers; Shannon information index; Pennisetum purpureum.

  5. Dynamique de structuration spatio-temporelle des populations de ...

    African Journals Online (AJOL)

    SARAH

    30 juin 2014 ... conventionnelle de la « Directive Cadre sur l'Eau de l'Union Européenne (DCE) » préconisée pour ... différence entre les indices de diversité biologique de Shannon de ... reste un outil de choix dans l'évaluation de la qualité.

  6. Impacts des caractéristiques physico-chimiques des eaux sur la ...

    African Journals Online (AJOL)

    Impacts des caractéristiques physico-chimiques des eaux sur la distribution du ... chimiques qui sont à l'origine d'une dégradation croissante de la qualité d'eau. ... Les valeurs d'indice de diversité de Shannon Weaver traduisent une grande ...

  7. CARACTERIZACIÓN DE REGENERACIÓN LEÑOSA POST-INCENDIO DE UN ECOSISTEMA TEMPLADO DEL PARQUE ECOLÓGICO CHIPINQUE, MÉXICO

    Directory of Open Access Journals (Sweden)

    Eduardo Alanís-Rodríguez

    2011-01-01

    ha, con una cobertura foliar de 12,526 m2·ha-1, lo que indica una cobertura del 100 % y sobreposición de copas. Los valores del índice de riqueza de Margalef (DMg=3.64 y de diversidad de Shannon (H'=2.39 indicaron alta diversidad.

  8. Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics

    International Nuclear Information System (INIS)

    Crooks, Gavin E; Sivak, David A

    2011-01-01

    Many interesting divergence measures between conjugate ensembles of nonequilibrium trajectories can be experimentally determined from the work distribution of the process. Herein, we review the statistical and physical significance of several of these measures, in particular the relative entropy (dissipation), Jeffreys divergence (hysteresis), Jensen–Shannon divergence (time-asymmetry), Chernoff divergence (work cumulant generating function), and Rényi divergence

  9. Construction of Interval Wavelet Based on Restricted Variational Principle and Its Application for Solving Differential Equations

    OpenAIRE

    Mei, Shu-Li; Lv, Hong-Liang; Ma, Qin

    2008-01-01

    Based on restricted variational principle, a novel method for interval wavelet construction is proposed. For the excellent local property of quasi-Shannon wavelet, its interval wavelet is constructed, and then applied to solve ordinary differential equations. Parameter choices for the interval wavelet method are discussed and its numerical performance is demonstrated.

  10. Tree species diversity and distribution patterns in tropical forests of Garo Hills.

    Science.gov (United States)

    A. Kumar; B.G. Marcot; A. Saxena

    2006-01-01

    We analyzed phytosociological characteristics and diversity patterns of tree species of tropical forests of Garo Hills, western Meghalaya, northeast India. The main vegetation of the region included primary forests, secondary forests, and sal (Shorea robusta) plantations, with 162, 132, and 87 tree species, respectively. The Shannon-Wiener...

  11. Protein landmarks for diversity assessment in wheat genotypes ...

    African Journals Online (AJOL)

    Grain proteins from 20 Indian wheat genotypes were evaluated for diversity assessment based seed storage protein profiling on sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE). Genetic diversity was evaluated using Nei's index, Shannon index and Unweighted pair group method with arithmetic ...

  12. 2485-IJBCS-Article-Dr Zinsou Valerien

    African Journals Online (AJOL)

    hp

    Thowthampitak J. 2008. RpfF gene of. Xanthomonas axonopodis pv. glycines involved in the regulation of virulence factor production and epiphytic fitness of bacterial pustule pathogen on soybean leaves. PhD thesis, Kasetsart. University, p. 139. Wrather JA, Sleper DA, Stevens WE,. Shannon JG, Wilson RF. 2003. Planting.

  13. Characterization of Anopheles Pseudopunctipennis Larval Habitats

    Science.gov (United States)

    1996-01-01

    conditions for growth in the small, slow-mov- ing streams and side pools of receding rivers con- taining a rich growth of green algae (Shannon and...Sanchez, J. L. Cespedes, R. Vargas- Sagarnaga and R. Rodriguez. 1992. Evidencia genetica 626 JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION

  14. Article 1

    African Journals Online (AJOL)

    integration of GIS, remote sensing and the Shannon's entropy method. The results obtained ... sprawl towards the sustainable growth and development of cities. ... unified medium by utilizing data collected at ..... networks for water supply to the sampled suburban ... automobile, taxis and small buses for daily commuting.

  15. High rates of Unintended Pregnancies among Young Women Sex ...

    African Journals Online (AJOL)

    USER

    Key words: sex work, reproductive health, HIV, Uganda, post-conflict. Résumé. Cette étude ..... managers who are supportive of HIV prevention, and having managers ..... and Shannon K. Negotiating safety and sexual risk reduction with clients ...

  16. Population ecology and community structure of sub-tidal soft sediment dwelling macro-invertebrates of Konkan, west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Vizakat, L.; Harkantra, S.N.; Parulekar, A.H.

    (Shannon Wiener index) varied from 0.44 to 3.58 (X = 1.94, SD = + or - 0.89). Population and community structure were more stable in premonsoon months. Carnivorous species Glycera alba modified the community structure mainly due to prey...

  17. Bird Density and Distribution Patterns in Relation to Anthropogenic ...

    African Journals Online (AJOL)

    In the river, human activity and water quality had no clear effect on the avifauna. ... which trophic relations might be altered and community ... from the bridge to sea, dividing the river into four 200 m sections ... made of vegetation cover at ground level, 1,. 2 and 3 m ... analysed using the Shannon diversity index. H′ to obtain ...

  18. Fish community structures in Zostera and non-Zostera regions of the ...

    African Journals Online (AJOL)

    Zostera capensis Setchell as shelter and food for juvenile fish in South ... (0) Shannon-Weaver index of general diversity (II) where. H = rP)o~P; ..... sea. Van der Elst 1981. sea. Day et al. 1981. sea sea. Wallace 1975. sea. Day et al. 1981 .... The water in the Mngazana estuary is remarkably clear, especially in the mouth area ...

  19. The Myth of Scientific Sufficiency in Librarianship.

    Science.gov (United States)

    Wright, H. Curtis

    Postwar librarians have sacrificed the humanistic basis of librarianship and regard the use of science in librarianship as a settled issue. American librarianship is currently dominated by the physical thinking of scientific systems theory, which includes Bertalanffy's general system theory, Wiener's cybernetics, and the Hartley-Shannon theory of…

  20. Interpreting the Recent Upper Limit on the Gravitational Wave Background from the Parkes Pulsar Timing Array

    OpenAIRE

    The NANOGrav Collaboration

    2016-01-01

    We provide comments on the article by Shannon et al. (Sep 2015) entitled "Gravitational waves from binary supermassive black holes missing in pulsar observations". The purpose of this letter is to address several misconceptions of the public and other scientists regarding the conclusions of that work.

  1. Between order and chaos: The quest for meaningful information

    NARCIS (Netherlands)

    Adriaans, P.

    2009-01-01

    The notion of meaningful information seems to be associated with the sweet spot between order and chaos. This form of meaningfulness of information, which is primarily what science is interested in, is not captured by both Shannon information and Kolmogorov complexity. In this paper I develop a

  2. Prediction of Intelligibility of Noisy and Time-Frequency Weighted Speech based on Mutual Information Between Amplitude Envelopes

    DEFF Research Database (Denmark)

    Jensen, Jesper; Taal, C.H.

    2013-01-01

    of Shannon information the critical-band amplitude envelopes of the noisy/processed signal convey about the corresponding clean signal envelopes. The resulting intelligibility predictor turns out to be a simple function of the correlation between noisy/processed and clean amplitude envelopes. The proposed...

  3. Spiking the expectancy profiles

    DEFF Research Database (Denmark)

    Hansen, Niels Chr.; Loui, Psyche; Vuust, Peter

    Melodic expectations are generated with different degrees of certainty. Given distributions of expectedness ratings for multiple continuations of each context, as obtained with the probe-tone paradigm, this certainty can be quantified in terms of Shannon entropy. Because expectations arise from s...

  4. Toward a Theory-Based Natural Language Capability in Robots and Other Embodied Agents: Evaluating Hausser's SLIM Theory and Database Semantics

    Science.gov (United States)

    Burk, Robin K.

    2010-01-01

    Computational natural language understanding and generation have been a goal of artificial intelligence since McCarthy, Minsky, Rochester and Shannon first proposed to spend the summer of 1956 studying this and related problems. Although statistical approaches dominate current natural language applications, two current research trends bring…

  5. Elektronisk kommunikation mellem sygehuse og kommuner

    DEFF Research Database (Denmark)

    Dahl, Mads Ronald; Kusk, Kate; Mielczarek, Kirstine

    2006-01-01

    focuses on this issue. The evaluation of the Aalborg-project named "exchange of information in the health care sector" from 2004 is analyzed using the ALT-model. In combination with communication theory (as formulated by CE Shannon) the analysis is used as foundation for three qualitative interviews...... and inspiration to further research....

  6. Solid medical waste management in Africa

    African Journals Online (AJOL)

    user

    databases searched using the same search terms included Web of. Science, Embase, Scopus, Proquest and African ..... Shannon, Taubman Library, University of Michigan, Ann. Arbor, USA, Ms. Irene Rattenborg, ..... Healthcare waste management in clinics in a rural health district in. KwaZulu-Natal. South Afr J Epidemiol ...

  7. Resonance – Journal of Science Education | Indian Academy of ...

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 7; Issue 2. Claude Elwood Shannon. Priti Shankar. Article-in-a-Box Volume 7 Issue 2 February 2002 pp 2-3 ... Author Affiliations. Priti Shankar1. Department of Computer Science & Automation, Indian Institute of Science, Bangalore 560 012, India.

  8. In upwelling regions in which anchovy Engraulis spp. and sardine ...

    African Journals Online (AJOL)

    spamer

    of anchovy and sardine is associated with these changes in abundance. Both species ... may cause sardine to shift prematurely from a phase of high to one of low .... temperature of 17°C is 51 h in the southern Benguela. Shannon: Modelling ...

  9. Structural study of nanosized yttrium-doped CaMnO3 perovskites

    Indian Academy of Sciences (India)

    Administrator

    Mater. 10 2461. Rodriguez-Carvajal J 1990 Collected abstract of powder di- ffraction meeting, Toulouse, p. 127. Shannon R D 1976 Acta Cryst. A32 751. Woodward P M, Vogt T, Cox D E, Arulraj A, Rao C N R,. Karen P and Cheetham A K 1998 Chem. Mater. 10 3652. Wunderlich F, Leisegang T and Weissbach T 2010 Phys.

  10. Compressive Sensing and Fast Simulations : Applications to Radar Detection

    NARCIS (Netherlands)

    Anitori, L.

    2012-01-01

    In most modern high-resolution multi-channel radar systems one of the major problems to deal with is the huge amount of data to be acquired, processed and/or stored. But why do we need all these data? According to the well known Nyquist-Shannon sampling theorem, real signals have to be sampled at at

  11. Monitoring User-System Performance in Interactive Retrieval Tasks

    NARCIS (Netherlands)

    Boldareva, L.; de Vries, A.P.; Hiemstra, Djoerd

    Monitoring user-system performance in interactive search is a challenging task. Traditional measures of retrieval evaluation, based on recall and precision, are not of any use in real time, for they require a priori knowledge of relevant documents. This paper shows how a Shannon entropy-based

  12. Phenomenological description of selected elementary chemical reaction mechanisms: An information-theoretic study

    International Nuclear Information System (INIS)

    Esquivel, R.O.; Flores-Gallegos, N.; Iuga, C.; Carrera, E.M.; Angulo, J.C.; Antolin, J.

    2010-01-01

    The information-theoretic description of the course of two elementary chemical reactions allows a phenomenological description of the chemical course of the hydrogenic abstraction and the S N 2 identity reactions by use of Shannon entropic measures in position and momentum spaces. The analyses reveal their synchronous/asynchronous mechanistic behavior.

  13. Proceedings of REMR (Repair, Evaluation, Maintenance, and Rehabilitation Research Program) Workshop on Assessment of the Stability of Concrete Structures on Rock Held in Vicksburg, Mississippi on 10-12 September 1985.

    Science.gov (United States)

    1987-01-01

    2159 Godwin, Neal Jr. SWOCO-O 2 729-2429 Greene , Brian NCBED-DD 2 473-2241 Gribar, John ORPED-DM 1 722-6820 Groves, Chris Shannon & Wilson - Gustafson...8217 behavor . For these reasons, it is now common (or should be) to continuously monitor the structure and its foundation throughout its service life. One of the

  14. Diversity of methanogens in the hindgut of grower and finisher pigs

    African Journals Online (AJOL)

    ajluser

    2012-03-13

    Mar 13, 2012 ... (TAE) buffer (40 mM Tris base, 20 mM glacial acetic acid, 1 mM. EDTA) with a 40 to ... (p>0.05) were observed in the number of band and. Shannon .... minantly to the production of volatile fatty acids (VFA), gases (CO2, H2,.

  15. Tsallis Entropy and the Transition to Scaling in Fragmentation

    Science.gov (United States)

    Sotolongo-Costa, Oscar; Rodriguez, Arezky H.; Rodgers, G. J.

    2000-12-01

    By using the maximum entropy principle with Tsallis entropy we obtain a fragment size distribution function which undergoes a transition to scaling. This distribution function reduces to those obtained by other authors using Shannon entropy. The treatment is easily generalisable to any process of fractioning with suitable constraints.

  16. Landauer's principle and the conservation of information

    International Nuclear Information System (INIS)

    Daffertshofer, A.; Plastino, A.R.

    2005-01-01

    Erasure of information requires the dissipation of a minimal amount of energy as being formulated in Landauer's principle. This profound concept in information processing has recently been derived by use of basic dynamical principles of statistical mechanics. We present an alternative derivation of Landauer's principle based on dynamical principles and certain properties of the Shannon-Gibbs-Boltzmann entropy, in particular (sub-)additivity

  17. Effets de la salinité au champ sur des paramètres agronomiques de ...

    African Journals Online (AJOL)

    SARAH

    31 juil. 2016 ... La classification K-means illustre les performances de variétés .... de gestion de pratiques culturales (Shannon, 1997) ... phase végétative en serre avec un contrôle de ... mesurer le niveau de salinité de la nappe d'eau et son.

  18. Microscopic study of low-lying yrast spectra in Mo isotopes

    Indian Academy of Sciences (India)

    consistent calculations, which involved an optimized basis of eight major oscillator shells with the constraint of axial .... agreement with the values calculated by M¨oller et al [27] for 100 104Mo. 2. Calculational ..... [22] A Guessous, N Schulz, M Bentalab, E Lubkiewicz, J L Durell, C J Pearson, W R Phillips,. J A Shannon, W ...

  19. An Evaluation of Integrated Curriculum as It Exists in Mathematics and Science SSS as Well as the Subsequent Supportive Presentation of Those Standards in Eighth Grade Mathematics and Science Textbooks

    Science.gov (United States)

    Gill, Clara Joanne Schneberger

    2010-01-01

    This study attempted to verify points of intersection (POIs) between mathematics and science in the eighth grade Sunshine State Standards (SSS), and to develop a valid and reliable instrument to evaluate these POIs as they were presented in the respective mathematics and science textbooks approved for use in Florida public schools. Shannon and…

  20. Fulltext PDF

    Indian Academy of Sciences (India)

    Refresher Couse in. Theoretical Physics at. Sf. Stephen's College. University of Delhi, Delhi. 1. 3. 4. May 2002 Volume 7 Number 5. SERIES ARTICLES. 08 The Study of Butterflies. Defences and Defensive Behaviour. Peter Smetacek. GENERAL ARTICLES. 16 From Shannon to Quantum Information Science. Mixed States.

  1. Texting Styles and Information Change of SMS Text Messages in Filipino

    Science.gov (United States)

    Cabatbat, Josephine Jill T.; Tapang, Giovanni A.

    2013-02-01

    We identify the different styles of texting in Filipino short message service (SMS) texts and analyze the change in unigram and bigram frequencies due to these styles. Style preference vectors for sample texts were calculated and used to identify the style combination used by an average individual. The change in Shannon entropy of the SMS text is explained in light of a coding process.

  2. An Informational-Theoretical Formulation of the Second Law of Thermodynamics

    Science.gov (United States)

    Ben-Naim, Arieh

    2009-01-01

    This paper presents a formulation of the second law of thermodynamics couched in terms of Shannon's measure of information. This formulation has an advantage over other formulations of the second law. First, it shows explicitly what is the thing that changes in a spontaneous process in an isolated system, which is traditionally referred to as the…

  3. Évaluation de la diversité floristique en herbacées des savanes de ...

    African Journals Online (AJOL)

    Thus, 37 species, 33 kinds and 10 families were identified in the savannah of Hyparrhenia diplandra (Hack.) Stapf and 27 species, 22 kinds and 8 families in the savannah of Loudetia simplex (Nees) CE Hubbard. Overall, the richest families in species were Poaceae, Fabaceae and the Cyperaceae. The Shannon diversity ...

  4. Light Color Attraction and Dietary Sugar Composition for Several Mosquito (Diptera: Culicidae) Species Found in North Central Florida

    Science.gov (United States)

    1998-07-02

    Osten Sacken), 2,841 chaoborids (Corethrella spp.), and 26 Lutzomyia shannon: (Dyar) were collected respectively. Proportions of trap collections...for Cx. (melanoconion) spp. Although female Lutzomyia shannoni (Dyar), were collected, no significant color differences were observed given the small

  5. Anthropophily of Lutzomyia wellcomei (Diptera: Psychodidae) in an Atlantic Forest Conservation Unit in Northeast Brazil.

    Science.gov (United States)

    Pinheiro, Marcos Paulo Gomes; Silva, José Hilário Tavares da; Inacio, Cássio Lázaro Silva; Ximenes, Maria de Fátima Freire de Melo

    2016-11-01

    Lutzomyia wellcomei (Fraiha, Shaw & Lainson) (Diptera: Psychodidae) can act as an important vector of Leishmania (Viannia) braziliensis This study presents the results of collections carried out in a fragment of Atlantic Forest in a Conservation Unit of Rio Grande do Norte state. Collections occurred over 12 consecutive months using Shannon and CDC traps. A total of 777 sand flies from eight species were collected: Lutzomyia walkeri (Newstead), Lutzomyia evandroi (Costa Lima & Antunes), Lutzomyia wellcomei (Fraiha, Shaw & Lainson), Lutzomyia sordellii (Shannon & Del Ponte), Lutzomyia brasiliensis (Costa Lima), Lutzomyia lenti (Mangabeira), Lutzomyia longipalpis (Lutz & Neiva), and Lutzomyia abonnenci (Floch & Chassignet). Lutzomyia wellcomei was the most abundant species using the Shannon trap (97%) and L. walkeri in the CDC trap (81%). It is important to note the abundance of L. wellcomei in Shannon trap collections, which favors the capture of anthropophilic species. Lutzomyia wellcomei was only present in months where rainfall was above 100 mm, confirming it as a species adapted to wetter months. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  6. Apparent Changes in the Abundance and Distribution of Anopheles Species on Grenada Island

    Science.gov (United States)

    1993-01-01

    entomolbgica en Mexico, pp. 15-40. In: Me- morias del IV Simposio Nacional Entomologia Med- ica y Veterinaria, Oaxtepec, Mor., Mexico. Sociedad...Mexicana de Entomologia . Root, F. M. and J. Andrews. 1938. Malaria and anonheline survey of Grenada, B.W.I. Am. J. H Y ~ . 27:549-579. - Shannon, R

  7. Culicídeos do lago de Itaipu, no rio Paraná, Sul do Brasil Culicidae of Itaipu lake, Paraná River, southern Brazil

    Directory of Open Access Journals (Sweden)

    Ueslei Teodoro

    1995-02-01

    Full Text Available De janeiro a dezembro de 1991 foram realizadas capturas mensais de culicídeos, no Município de Guaíra, Estado do Paraná (Brasil, na margem esquerda do lago de Itaipu, ao lado da via de acesso que conduzia aos Saltos das Sete Quedas, usando-se armadilha luminosa de Shannon, e isca humana em área urbanizada. Obtiveram-se informações sobre a fauna culicidiana, as espécies prevalentes, a variação sazonal, o horário de maior densidade e a afinidade dos mosquitos em relação ao hospedeiro humano. Foram identificadas 41 espécies de culicídeos dos gêneros Anopheles, Aedes, Aedomyia, Coquillettidia, Culex, Mansonia, Psorophora e Uranotaenia. Capturaram-se 21.280 mosquitos em armadilha de Shannon e 1.010 em isca humana. As espécies mais freqüentes em armadilha de Shannon - Coquillettidia shannoni, Mansonia humeralis, Anopheles triannulatus, Aedes scapularis e Anopheles albitarsis - perfizeram 82,78% dos mosquitos capturados. Em isca humana Aedes scapularís, Mansonia humeralis e Anopheles albitarsis, somaram 91,21% dos insetos capturados. Em armadilha de Shannon o horário de maior atividade das espécies prevalentes foi entre 19 e 22 h. Em isca humana Aedes scapularis teve maior densidade das 20 às 21 h, enquanto Mansonia humeralis e Anopheles albitarsis prevaleceram das 18 às 19 h. Dentre as espécies prevalentes em armadilha de Shannon, Coquillettidia shannoni, Mansonia humeralis e Anopheles albitarsis tiveram pico de atividade no mês de abril, Anopheles triannulatus em janeiro e Aedes scapularis em fevereiro.Mosquito catches were made in Guaíra county, Paraná State, southern Brazil, in the vicinity of Itaipu dam, from January to December 1991. The catches were made with a Shannon light trap and human bait. The Shannon light trap was installed beside the highway that used, formerly, to lead to the Sete Quedas cataracts and the human bait was used in the urban area. Data about the Culicidae fauna were obtained as to predominant

  8. Ecological aspects of phlebotomine fauna (Diptera, Psychodidae of Serra da Cantareira, Greater São Paulo Metropolitan region, state of São Paulo, Brazil Aspectos ecológicos da fauna flebotomínea (Diptera, Psychodidae da Serra da Cantareira, Região metropolitana da Grande São Paulo, Estado de São Paulo, Brasil

    Directory of Open Access Journals (Sweden)

    José Carlos Moschin

    2013-03-01

    Full Text Available Human cases of American cutaneous leishmaniasis (ACL have been recorded in Serra da Cantareira, in the Greater São Paulo Metropolitan Region, where two conservation units are situated, the Parque Estadual da Cantareira and the Parque Estadual Alberto Löfgren. The present study aimed to identify the sandfly fauna and some of its ecological aspects in these two parks and their surrounding area to investigate Leishmania sp. vectors. The captures were undertaken monthly from January to December 2009, from 6:00 p.m. to 6:00 a.m., with automatic light traps installed in forests and peridomicile areas and with modified black/white Shannon traps in the peridomicile. A total of 12 species and 5,436 sandflies were captured: with automatic light traps (141, Shannon traps (5,219 and attempting to bite the researchers while they were conducting the collection in Shannon traps (76. Pintomyia fischeri and Migonemyia migonei were the most abundant species. Pi. fischeri predominated in all three kinds of captures (49%, 88.8% and 65.8%, respectively. Mg. migonei was the second most prevalent in Shannon traps (10.0% and attempting to bite the researchers (22.4%. Pi. fischeri females were significantly more attracted to black and those of Mg. migonei to white Shannon traps. A positive and significant correlation was observed between the numbers of Pi. fischeri and the mean of minimum relative humidity values on the fifteen days prior to capture, while there was a negative and significant correlation between the relative humidity on the capture day and the two most abundant species. The anthropophilia and high frequencies of Pi. fischeri and Mg. migonei suggest that both species may be transmitting ACL agents in this region.Casos humanos de leishmaniose tegumentar americana (LTA têm sido registrados na Serra da Cantareira, região da Grande São Paulo, onde se situam o Parque Estadual da Cantareira e o Parque Estadual Alberto Löfgren. O estudo teve como objetivo

  9. Cancer biomarker discovery: the entropic hallmark.

    Science.gov (United States)

    Berretta, Regina; Moscato, Pablo

    2010-08-18

    It is a commonly accepted belief that cancer cells modify their transcriptional state during the progression of the disease. We propose that the progression of cancer cells towards malignant phenotypes can be efficiently tracked using high-throughput technologies that follow the gradual changes observed in the gene expression profiles by employing Shannon's mathematical theory of communication. Methods based on Information Theory can then quantify the divergence of cancer cells' transcriptional profiles from those of normally appearing cells of the originating tissues. The relevance of the proposed methods can be evaluated using microarray datasets available in the public domain but the method is in principle applicable to other high-throughput methods. Using melanoma and prostate cancer datasets we illustrate how it is possible to employ Shannon Entropy and the Jensen-Shannon divergence to trace the transcriptional changes progression of the disease. We establish how the variations of these two measures correlate with established biomarkers of cancer progression. The Information Theory measures allow us to identify novel biomarkers for both progressive and relatively more sudden transcriptional changes leading to malignant phenotypes. At the same time, the methodology was able to validate a large number of genes and processes that seem to be implicated in the progression of melanoma and prostate cancer. We thus present a quantitative guiding rule, a new unifying hallmark of cancer: the cancer cell's transcriptome changes lead to measurable observed transitions of Normalized Shannon Entropy values (as measured by high-throughput technologies). At the same time, tumor cells increment their divergence from the normal tissue profile increasing their disorder via creation of states that we might not directly measure. This unifying hallmark allows, via the the Jensen-Shannon divergence, to identify the arrow of time of the processes from the gene expression profiles

  10. Measuring species diversity in a subtropical forest across a tree size gradient: a comparison of diversity indices

    International Nuclear Information System (INIS)

    Ke, X.; Su, Z.; Hu, Y.; Zhou, Y.; Xu, M.

    2017-01-01

    Shannon-Wiener index and Simpson's diversity index together with other metrics, e.g., richness, number of stems per species or species-specific density (N: S ratio), and kurtosis, were applied to characterize the woody plant diversity patterns of a subtropical broadleaved forest in south China. The aims of our study were to compare the efficacy and sensitivity to community diversity measures between Shannon-Wiener index and Simpson's diversity index. Tree census data from a 5-ha sample plot was partitioned into 3 datasets by diameter class to represent 3 distinct woody plant communities for the characterization of diversity across communities. The 5-ha sample plot of the forest had a total abundance of 23,301 tree stems = 1 cm DBH and a richness of 139 species. The majority of tree stems were seedlings (41.1%) and saplings (38.8%), whereas canopy trees only accounted for 20.1% of the total tree stems. Both Shannon-Wiener index and Simpson's diversity index decreased significantly in response to a decrease in the N: S ratio across the datasets, but Shannon-Wiener index was more sensitive to plot-based richness changes and had a higher efficacy in predicting changes in species richness. Our findings are contrary to the general belief that Shannon-Wiener index is an insensitive measure of the character of the N: S relationship and have demonstrated that it remains a good measure for species diversity in plant community studies for its sensitivity and efficacy. We also suggest that the kurtosis statistic can be used as a new diversity measure due to its sensitivity to diversity change. (author)

  11. Anderson localization in one-dimensional quasiperiodic lattice models with nearest- and next-nearest-neighbor hopping

    International Nuclear Information System (INIS)

    Gong, Longyan; Feng, Yan; Ding, Yougen

    2017-01-01

    Highlights: • Quasiperiodic lattice models with next-nearest-neighbor hopping are studied. • Shannon information entropies are used to reflect state localization properties. • Phase diagrams are obtained for the inverse bronze and golden means, respectively. • Our studies present a more complete picture than existing works. - Abstract: We explore the reduced relative Shannon information entropies SR for a quasiperiodic lattice model with nearest- and next-nearest-neighbor hopping, where an irrational number is in the mathematical expression of incommensurate on-site potentials. Based on SR, we respectively unveil the phase diagrams for two irrationalities, i.e., the inverse bronze mean and the inverse golden mean. The corresponding phase diagrams include regions of purely localized phase, purely delocalized phase, pure critical phase, and regions with mobility edges. The boundaries of different regions depend on the values of irrational number. These studies present a more complete picture than existing works.

  12. Information Entropy Measures for Stand Structural Diversity:Joint Entropy

    Institute of Scientific and Technical Information of China (English)

    Lei Xiangdong; Lu Yuanchang

    2004-01-01

    Structural diversity is the key attribute of a stand. A set of biodiversity measures in ecology was introduced in forest management for describing stand structure, of which Shannon information entropy (Shannon index) has been the most widely used measure of species diversity. It is generally thought that tree size diversity could serve as a good proxy for height diversity. However, tree size diversity and height diversity for stand structure is not completely consistent. Stand diameter cannot reflect height information completely. Either tree size diversity or height diversity is one-dimensional information entropy measure. This paper discussed the method of multiple-dimensional information entropy measure with the concept of joint entropy. It is suggested that joint entropy is a good measure for describing overall stand structural diversity.

  13. Entropy and complexity analysis of hydrogenic Rydberg atoms

    Energy Technology Data Exchange (ETDEWEB)

    Lopez-Rosa, S. [Instituto Carlos I de Fisica Teorica y Computacional, Universidad de Granada, 18071-Granada (Spain); Departamento de Fisica Aplicada II, Universidad de Sevilla, 41012-Sevilla (Spain); Toranzo, I. V.; Dehesa, J. S. [Instituto Carlos I de Fisica Teorica y Computacional, Universidad de Granada, 18071-Granada (Spain); Departamento de Fisica Atomica, Molecular y Nuclear, Universidad de Granada, 18071-Granada (Spain); Sanchez-Moreno, P. [Instituto Carlos I de Fisica Teorica y Computacional, Universidad de Granada, 18071-Granada (Spain); Departamento de Matematica Aplicada, Universidad de Granada, 18071-Granada (Spain)

    2013-05-15

    The internal disorder of hydrogenic Rydberg atoms as contained in their position and momentum probability densities is examined by means of the following information-theoretic spreading quantities: the radial and logarithmic expectation values, the Shannon entropy, and the Fisher information. As well, the complexity measures of Cramer-Rao, Fisher-Shannon, and Lopez Ruiz-Mancini-Calvet types are investigated in both reciprocal spaces. The leading term of these quantities is rigorously calculated by use of the asymptotic properties of the concomitant entropic functionals of the Laguerre and Gegenbauer orthogonal polynomials which control the wavefunctions of the Rydberg states in both position and momentum spaces. The associated generalized Heisenberg-like, logarithmic and entropic uncertainty relations are also given. Finally, application to linear (l= 0), circular (l=n- 1), and quasicircular (l=n- 2) states is explicitly done.

  14. Rudolf Ahlswede’s lectures on information theory

    CERN Document Server

    Althöfer, Ingo; Deppe, Christian; Tamm, Ulrich

    Volume 1 : The volume “Storing and Transmitting Data” is based on Rudolf Ahlswede's introductory course on "Information Theory I" and presents an introduction to Shannon Theory. Readers, familiar or unfamiliar with the technical intricacies of Information Theory, will benefit considerably from working through the book; especially Chapter VI with its lively comments and uncensored insider views from the world of science and research offers informative and revealing insights. This is the first of several volumes that will serve as a collected research documentation of Rudolf Ahlswede’s lectures on information theory. Each volume includes comments from an invited well-known expert. Holger Boche contributed his insights in the supplement of the present volume. Classical information processing concerns the main tasks of gaining knowledge, storage, transmitting and hiding data. The first task is the prime goal of Statistics. For the two next, Shannon presented an impressive mathematical theory called Informat...

  15. Evaluating the use of diversity indices to distinguish between microbial communities with different traits.

    Science.gov (United States)

    Feranchuk, Sergey; Belkova, Natalia; Potapova, Ulyana; Kuzmin, Dmitry; Belikov, Sergei

    2018-05-23

    Several measures of biodiversity are commonly used to describe microbial communities, analyzed using 16S gene sequencing. A wide range of available experiments on 16S gene sequencing allows us to present a framework for a comparison of various diversity indices. The criterion for the comparison is the statistical significance of the difference in index values for microbial communities with different traits, within the same experiment. The results of the evaluation indicate that Shannon diversity is the most effective measure among the commonly used diversity indices. The results also indicate that, within the present framework, the Gini coefficient as a diversity index is comparable to Shannon diversity, despite the fact that the Gini coefficient, as a diversity estimator, is far less popular in microbiology than several other measures. Copyright © 2018 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

  16. Role of information theoretic uncertainty relations in quantum theory

    Energy Technology Data Exchange (ETDEWEB)

    Jizba, Petr, E-mail: p.jizba@fjfi.cvut.cz [FNSPE, Czech Technical University in Prague, Břehová 7, 115 19 Praha 1 (Czech Republic); ITP, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin (Germany); Dunningham, Jacob A., E-mail: J.Dunningham@sussex.ac.uk [Department of Physics and Astronomy, University of Sussex, Falmer, Brighton, BN1 9QH (United Kingdom); Joo, Jaewoo, E-mail: j.joo@surrey.ac.uk [Advanced Technology Institute and Department of Physics, University of Surrey, Guildford, GU2 7XH (United Kingdom)

    2015-04-15

    Uncertainty relations based on information theory for both discrete and continuous distribution functions are briefly reviewed. We extend these results to account for (differential) Rényi entropy and its related entropy power. This allows us to find a new class of information-theoretic uncertainty relations (ITURs). The potency of such uncertainty relations in quantum mechanics is illustrated with a simple two-energy-level model where they outperform both the usual Robertson–Schrödinger uncertainty relation and Shannon entropy based uncertainty relation. In the continuous case the ensuing entropy power uncertainty relations are discussed in the context of heavy tailed wave functions and Schrödinger cat states. Again, improvement over both the Robertson–Schrödinger uncertainty principle and Shannon ITUR is demonstrated in these cases. Further salient issues such as the proof of a generalized entropy power inequality and a geometric picture of information-theoretic uncertainty relations are also discussed.

  17. Theoretical information measurement in nonrelativistic time-dependent approach

    Science.gov (United States)

    Najafizade, S. A.; Hassanabadi, H.; Zarrinkamar, S.

    2018-02-01

    The information-theoretic measures of time-dependent Schrödinger equation are investigated via the Shannon information entropy, variance and local Fisher quantities. In our calculations, we consider the two first states n = 0,1 and obtain the position Sx (t) and momentum Sp (t) Shannon entropies as well as Fisher information Ix (t) in position and momentum Ip (t) spaces. Using the Fourier transformed wave function, we obtain the results in momentum space. Some interesting features of the information entropy densities ρs (x,t) and γs (p,t), as well as the probability densities ρ (x,t) and γ (p,t) for time-dependent states are demonstrated. We establish a general relation between variance and Fisher's information. The Bialynicki-Birula-Mycielski inequality is tested and verified for the states n = 0,1.

  18. Entropy and complexity analysis of hydrogenic Rydberg atoms

    International Nuclear Information System (INIS)

    López-Rosa, S.; Toranzo, I. V.; Dehesa, J. S.; Sánchez-Moreno, P.

    2013-01-01

    The internal disorder of hydrogenic Rydberg atoms as contained in their position and momentum probability densities is examined by means of the following information-theoretic spreading quantities: the radial and logarithmic expectation values, the Shannon entropy, and the Fisher information. As well, the complexity measures of Crámer-Rao, Fisher-Shannon, and López Ruiz-Mancini-Calvet types are investigated in both reciprocal spaces. The leading term of these quantities is rigorously calculated by use of the asymptotic properties of the concomitant entropic functionals of the Laguerre and Gegenbauer orthogonal polynomials which control the wavefunctions of the Rydberg states in both position and momentum spaces. The associated generalized Heisenberg-like, logarithmic and entropic uncertainty relations are also given. Finally, application to linear (l= 0), circular (l=n− 1), and quasicircular (l=n− 2) states is explicitly done.

  19. Comparison of insect biodiversity between organic and conventional plantations in Kodagu, Karnataka, India

    Directory of Open Access Journals (Sweden)

    S. Mone

    2014-08-01

    Full Text Available We undertook a comparative analysis of ground insects and fruit eating butterflies on 29 different plantations in Kodagu District of Karnataka which is one of the rich biodiversity zones of the Western Ghats. These included organic and conventional coffee and cardamom plantations using different levels of chemical fertilizers and pesticides. A total number of 457 ground insect species were collected using pit-fall traps which included 92 species of ants and 123 species of beetles, among other insect taxa that we measured. Similarly, 25 species of butterflies belonging to the family Nymphalidae were collected using bait traps. We found a clear negative effect on the ground insect species diversity (Shannon index and evenness (Shannon evenness index in pesticide treated plantations as compared to the organic plantations. A similar negative effect was observed for butterfly diversity in plantations using pesticides. Our results corroborate the value of organic plantations in supporting higher levels of biodiversity.

  20. A real-time assessment of measurement uncertainty in the experimental characterization of sprays

    International Nuclear Information System (INIS)

    Panão, M R O; Moreira, A L N

    2008-01-01

    This work addresses the estimation of the measurement uncertainty of discrete probability distributions used in the characterization of sprays. A real-time assessment of this measurement uncertainty is further investigated, particularly concerning the informative quality of the measured distribution and the influence of acquiring additional information on the knowledge retrieved from statistical analysis. The informative quality is associated with the entropy concept as understood in information theory (Shannon entropy), normalized by the entropy of the most informative experiment. A new empirical correlation is derived between the error accuracy of a discrete cumulative probability distribution and the normalized Shannon entropy. The results include case studies using: (i) spray impingement measurements to study the applicability of the real-time assessment of measurement uncertainty, and (ii) the simulation of discrete probability distributions of unknown shape or function to test the applicability of the new correlation

  1. Black plague

    Energy Technology Data Exchange (ETDEWEB)

    MacIsaac, M.

    1995-09-01

    The Canadian government has eliminated the subsidy that Cape Breton Development Corporation (Devco) has received for the past 27 years (averaging $59.5 million annually for the last decade). Other problems facing Devco include privatization of two of Devco`s major customers, demand for lower coal prices, absenteeism, union difficulties, and problems with the Phalen mine. Pittsburgh`s John T. Boyd Co. was hired in May to assess Devco`s operations and its ability to compete with other coal mining companies. In July, Joe Shannon was appointed as the new president of Devco and given the mandate of making Devco commercially viable, with privatization in the longer term. Shannon will attempt to determine whether the mine`s problems with production are due to bad management or to technical problems and geology. 1 fig.

  2. Convergence testing for MCNP5 Monte Carlo eigenvalue calculations

    International Nuclear Information System (INIS)

    Brown, F.; Nease, B.; Cheatham, J.

    2007-01-01

    Determining convergence of Monte Carlo criticality problems is complicated by the statistical noise inherent in the random, walks of the neutrons in each generation. The latest version of MCNP5 incorporates an important new tool for assessing convergence: the Shannon entropy of the fission source distribution, H src . Shannon entropy is a well-known concept from information theory and provides a single number for each iteration to help characterize convergence trends for the fission source distribution. MCNP5 computes H src for each iteration, and these values may be plotted to examine convergence trends. Convergence testing should include both k eff and H src , since the fission distribution will converge more slowly than k eff , especially when the dominance ratio is close to 1.0. (authors)

  3. Anderson localization in one-dimensional quasiperiodic lattice models with nearest- and next-nearest-neighbor hopping

    Energy Technology Data Exchange (ETDEWEB)

    Gong, Longyan, E-mail: lygong@njupt.edu.cn [Information Physics Research Center and Department of Applied Physics, Nanjing University of Posts and Telecommunications, Nanjing, 210003 (China); Institute of Signal Processing and Transmission, Nanjing University of Posts and Telecommunications, Nanjing, 210003 (China); National Laboratory of Solid State Microstructures, Nanjing University, Nanjing 210093 (China); Feng, Yan; Ding, Yougen [Information Physics Research Center and Department of Applied Physics, Nanjing University of Posts and Telecommunications, Nanjing, 210003 (China); Institute of Signal Processing and Transmission, Nanjing University of Posts and Telecommunications, Nanjing, 210003 (China)

    2017-02-12

    Highlights: • Quasiperiodic lattice models with next-nearest-neighbor hopping are studied. • Shannon information entropies are used to reflect state localization properties. • Phase diagrams are obtained for the inverse bronze and golden means, respectively. • Our studies present a more complete picture than existing works. - Abstract: We explore the reduced relative Shannon information entropies SR for a quasiperiodic lattice model with nearest- and next-nearest-neighbor hopping, where an irrational number is in the mathematical expression of incommensurate on-site potentials. Based on SR, we respectively unveil the phase diagrams for two irrationalities, i.e., the inverse bronze mean and the inverse golden mean. The corresponding phase diagrams include regions of purely localized phase, purely delocalized phase, pure critical phase, and regions with mobility edges. The boundaries of different regions depend on the values of irrational number. These studies present a more complete picture than existing works.

  4. Nutrition and hydration: an analysis of the recent papal statement in the light of the Roman Catholic bioethical tradition.

    Science.gov (United States)

    Shannon, Thomas A

    2006-04-01

    This article discusses the unexpectedly firm stance professed by John Paul II on the provision of artificial nutrition and hydration to patients who are in a persistent vegetative state, and it implications on previously held standards of judging medical treatments. The traditional ordinary/extraordinary care distinction is assessed in light of complexities of the recent allocution as well as its impact on Catholic individuals and in Catholic health care facilities. Shannon concludes that the papal allocution infers that the average Catholic patient is incapable of making proper judgments about their own care. Shannon sees the preservation of life at all costs as at least highly troubling, if not as a radical move against the Catholic medical ethics tradition.

  5. Evaluation of Weed Diversity and Modelling Light Interception and Distribution in Multiple and Sole Cropping of Millet (Setaria italica L. and Bean (Phaseolus vulgaris L.

    Directory of Open Access Journals (Sweden)

    A Koocheki

    2013-10-01

    Full Text Available In order to investigate the weed diversity and modeling light interception in sole and intercropping millet and bean an experiment was conducted as complete randomized block design with 4 treatments and 4 replications at the Agricultural Research Station, Ferdowsi University of Mashhad, Iran, during 2008. Treatments included monocultures, intercropping of millet and bean and a control treatment where weeds grew without crops. In this experiment Shannon diversity index and Sorensen similarity index was investigated at six stages. Results indicated that in each stage Shannon index was affected by treatments. In first stage intercropping had the lowest weed diversity but in another stages it has no significant with monocultures. Control treatment has highest weed diversity. For modeling light interception were used INTERCOM model. Results showed that in light interception plant height and leaf distribution was more effective than LAI (Leaf Area Index. Light interception in intercropping was more effective than monoculture.

  6. Role of information theoretic uncertainty relations in quantum theory

    International Nuclear Information System (INIS)

    Jizba, Petr; Dunningham, Jacob A.; Joo, Jaewoo

    2015-01-01

    Uncertainty relations based on information theory for both discrete and continuous distribution functions are briefly reviewed. We extend these results to account for (differential) Rényi entropy and its related entropy power. This allows us to find a new class of information-theoretic uncertainty relations (ITURs). The potency of such uncertainty relations in quantum mechanics is illustrated with a simple two-energy-level model where they outperform both the usual Robertson–Schrödinger uncertainty relation and Shannon entropy based uncertainty relation. In the continuous case the ensuing entropy power uncertainty relations are discussed in the context of heavy tailed wave functions and Schrödinger cat states. Again, improvement over both the Robertson–Schrödinger uncertainty principle and Shannon ITUR is demonstrated in these cases. Further salient issues such as the proof of a generalized entropy power inequality and a geometric picture of information-theoretic uncertainty relations are also discussed

  7. Compressive Sensing in Communication Systems

    DEFF Research Database (Denmark)

    Fyhn, Karsten

    2013-01-01

    . The need for cheaper, smarter and more energy efficient wireless devices is greater now than ever. This thesis addresses this problem and concerns the application of the recently developed sampling theory of compressive sensing in communication systems. Compressive sensing is the merging of signal...... acquisition and compression. It allows for sampling a signal with a rate below the bound dictated by the celebrated Shannon-Nyquist sampling theorem. In some communication systems this necessary minimum sample rate, dictated by the Shannon-Nyquist sampling theorem, is so high it is at the limit of what...... with using compressive sensing in communication systems. The main contribution of this thesis is two-fold: 1) a new compressive sensing hardware structure for spread spectrum signals, which is simpler than the current state-of-the-art, and 2) a range of algorithms for parameter estimation for the class...

  8. Fractional Delayer Utilizing Hermite Interpolation with Caratheodory Representation

    Directory of Open Access Journals (Sweden)

    Qiang DU

    2018-04-01

    Full Text Available Fractional delay is indispensable for many sorts of circuits and signal processing applications. Fractional delay filter (FDF utilizing Hermite interpolation with an analog differentiator is a straightforward way to delay discrete signals. This method has a low time-domain error, but a complicated sampling module than the Shannon sampling scheme. A simplified scheme, which is based on Shannon sampling and utilizing Hermite interpolation with a digital differentiator, will lead a much higher time-domain error when the signal frequency approaches the Nyquist rate. In this letter, we propose a novel fractional delayer utilizing Hermite interpolation with Caratheodory representation. The samples of differential signal are obtained by Caratheodory representation from the samples of the original signal only. So, only one sampler is needed and the sampling module is simple. Simulation results for four types of signals demonstrate that the proposed method has significantly higher interpolation accuracy than Hermite interpolation with digital differentiator.

  9. Entropic information of dynamical AdS/QCD holographic models

    Energy Technology Data Exchange (ETDEWEB)

    Bernardini, Alex E., E-mail: alexeb@ufscar.br [Departamento de Física, Universidade Federal de São Carlos, PO Box 676, 13565-905, São Carlos, SP (Brazil); Rocha, Roldão da, E-mail: roldao.rocha@ufabc.edu.br [Centro de Matemática, Computação e Cognição, Universidade Federal do ABC, UFABC, 09210-580, Santo André (Brazil)

    2016-11-10

    The Shannon based conditional entropy that underlies five-dimensional Einstein–Hilbert gravity coupled to a dilaton field is investigated in the context of dynamical holographic AdS/QCD models. Considering the UV and IR dominance limits of such AdS/QCD models, the conditional entropy is shown to shed some light onto the meson classification schemes, which corroborate with the existence of light-flavor mesons of lower spins in Nature. Our analysis is supported by a correspondence between statistical mechanics and information entropy which establishes the physical grounds to the Shannon information entropy, also in the context of statistical mechanics, and provides some specificities for accurately extending the entropic discussion to continuous modes of physical systems. From entropic informational grounds, the conditional entropy allows one to identify the lower experimental/phenomenological occurrence of higher spin mesons in Nature. Moreover, it introduces a quantitative theoretical apparatus for studying the instability of high spin light-flavor mesons.

  10. The Entropic Linkage between Equity and Bond Market Dynamics

    Directory of Open Access Journals (Sweden)

    Edgar Parker

    2017-06-01

    Full Text Available An alternative derivation of the yield curve based on entropy or the loss of information as it is communicated through time is introduced. Given this focus on entropy growth in communication the Shannon entropy will be utilized. Additionally, Shannon entropy’s close relationship to the Kullback–Leibler divergence is used to provide a more precise understanding of this new yield curve. The derivation of the entropic yield curve is completed with the use of the Burnashev reliability function which serves as a weighting between the true and error distributions. The deep connections between the entropic yield curve and the popular Nelson–Siegel specification are also examined. Finally, this entropically derived yield curve is used to provide an estimate of the economy’s implied information processing ratio. This information theoretic ratio offers a new causal link between bond and equity markets, and is a valuable new tool for the modeling and prediction of stock market behavior.

  11. Applications of a fast, continuous wavelet transform

    Energy Technology Data Exchange (ETDEWEB)

    Dress, W.B.

    1997-02-01

    A fast, continuous, wavelet transform, based on Shannon`s sampling theorem in frequency space, has been developed for use with continuous mother wavelets and sampled data sets. The method differs from the usual discrete-wavelet approach and the continuous-wavelet transform in that, here, the wavelet is sampled in the frequency domain. Since Shannon`s sampling theorem lets us view the Fourier transform of the data set as a continuous function in frequency space, the continuous nature of the functions is kept up to the point of sampling the scale-translation lattice, so the scale-translation grid used to represent the wavelet transform is independent of the time- domain sampling of the signal under analysis. Computational cost and nonorthogonality aside, the inherent flexibility and shift invariance of the frequency-space wavelets has advantages. The method has been applied to forensic audio reconstruction speaker recognition/identification, and the detection of micromotions of heavy vehicles associated with ballistocardiac impulses originating from occupants` heart beats. Audio reconstruction is aided by selection of desired regions in the 2-D representation of the magnitude of the transformed signal. The inverse transform is applied to ridges and selected regions to reconstruct areas of interest, unencumbered by noise interference lying outside these regions. To separate micromotions imparted to a mass-spring system (e.g., a vehicle) by an occupants beating heart from gross mechanical motions due to wind and traffic vibrations, a continuous frequency-space wavelet, modeled on the frequency content of a canonical ballistocardiogram, was used to analyze time series taken from geophone measurements of vehicle micromotions. By using a family of mother wavelets, such as a set of Gaussian derivatives of various orders, features such as the glottal closing rate and word and phrase segmentation may be extracted from voice data.

  12. Tree species composition and structure in an old bottomland hardwood forest in south-central Arkansas

    Science.gov (United States)

    Brian Roy Lockhart; James M. Guldin; Thomas Foti

    2010-01-01

    Tree species composition and structure was determined for an old bottomland hardwood forest located in the Moro Creek Bottoms Natural Area in south-central Arkansas. Diversity for this forest was high with species richness ranging from 33 for the overstory and sapling strata to 26 for the seedling stratum and Shannon-Weiner values of 2.54 to 1.02 for the overstory and...

  13. Unmet health care needs for persons with environmental sensitivity

    OpenAIRE

    Gibson, Pamela Reed; Kovach, Shannon; Lupfer, Alexis

    2015-01-01

    Pamela Reed Gibson, Shannon Kovach, Alexis LupferDepartment of Psychology, James Madison University, Harrisonburg, VA, USAAbstract: Studies of unmet health care needs have shown that women, people with poor health, and people with lower socioeconomic status are more likely to report having unmet health care needs. In this study, we examined the types of and reasons for unmet health care needs in 465 people with environmental sensitivities. A second area of inquiry involved negative reactions ...

  14. Implementation of Layered Decoding Architecture for LDPC Code using Layered Min-Sum Algorithm

    OpenAIRE

    Sandeep Kakde; Atish Khobragade; Shrikant Ambatkar; Pranay Nandanwar

    2017-01-01

    For binary field and long code lengths, Low Density Parity Check (LDPC) code approaches Shannon limit performance. LDPC codes provide remarkable error correction performance and therefore enlarge the design space for communication systems.In this paper, we have compare different digital modulation techniques and found that BPSK modulation technique is better than other modulation techniques in terms of BER. It also gives error performance of LDPC decoder over AWGN channel using Min-Sum algori...

  15. Permutation Entropy: New Ideas and Challenges

    Directory of Open Access Journals (Sweden)

    Karsten Keller

    2017-03-01

    Full Text Available Over recent years, some new variants of Permutation entropy have been introduced and applied to EEG analysis, including a conditional variant and variants using some additional metric information or being based on entropies that are different from the Shannon entropy. In some situations, it is not completely clear what kind of information the new measures and their algorithmic implementations provide. We discuss the new developments and illustrate them for EEG data.

  16. Medical Engagement: Beyond the MEDCAP

    Science.gov (United States)

    2008-04-16

    objectives by “supporting economic growth, agriculture , and trade; global health; and democracy, conflict prevention, and humanitarian assistance.”105 As...volunteers work in a variety of endeavors including business development, environmental awareness, agriculture , and health, among other areas.107 Within...and Health Systems Analysis,” Developing World Bioethics 5, no. 2, 2005, 149. 132 Shannon Darcy, USAID Bureau of Global Health, interview by author

  17. Asymptotics of the information entropy of the Airy function

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez-Moreno, P [Departamento de Fisica Moderna, Universidad de Granada, Granada (Spain); Instituto ' Carlos I' de Fisica Teorica y Computacional, Universidad de Granada, Granada (Spain); Yanez, R J [Instituto ' Carlos I' de Fisica Teorica y Computacional, Universidad de Granada, Granada (Spain); Departamento de Matematica Aplicada, Universidad de Granada, Granada (Spain); Buyarov, V [Moscow State University (Russian Federation)

    2005-11-18

    The Boltzmann-Shannon information entropy of linear potential wavefunctions is known to be controlled by the information entropy of the Airy function Ai(x). Here, the entropy asymptotics is analysed so that the first two leading terms (previously calculated in the WKB approximation) as well as the following term (already conjectured) are derived by using only the specific properties of the Airy function.

  18. Quantum information and general relativity

    International Nuclear Information System (INIS)

    Peres, A.

    2004-01-01

    The Einstein-Podolsky-Rosen paradox (1935) is reexamined in the light of Shannon's information theory (1948). The EPR argument did not take into account that the observers' information was localized, like any other physical object. General relativity introduces new problems: there are horizons which act as on-way membranes for the propagation of quantum information, in particular black holes which act like sinks. (Abstract Copyright [2004], Wiley Periodicals, Inc.)

  19. Quantum information and general relativity

    Energy Technology Data Exchange (ETDEWEB)

    Peres, A. [Technion, Israel Institute of Technology, Haifa (Israel)

    2004-12-01

    The Einstein-Podolsky-Rosen paradox (1935) is reexamined in the light of Shannon's information theory (1948). The EPR argument did not take into account that the observers' information was localized, like any other physical object. General relativity introduces new problems: there are horizons which act as on-way membranes for the propagation of quantum information, in particular black holes which act like sinks. (Abstract Copyright [2004], Wiley Periodicals, Inc.)

  20. Quantum information and general relativity

    OpenAIRE

    Peres, Asher

    2004-01-01

    The Einstein-Podolsky-Rosen paradox (1935) is reexamined in the light of Shannon's information theory (1948). The EPR argument did not take into account that the observers' information was localized, like any other physical object. General relativity introduces new problems: there are horizons which act as one-way membranes for the propagation of quantum information, in particular black holes which act like sinks.

  1. Quantum information and general relativity

    Science.gov (United States)

    Peres, A.

    2004-11-01

    The Einstein-Podolsky-Rosen paradox (1935) is reexamined in the light of Shannon's information theory (1948). The EPR argument did not take into account that the observers' information was localized, like any other physical object. General relativity introduces new problems: there are horizons which act as on-way membranes for the propagation of quantum information, in particular black holes which act like sinks.

  2. Characterization of a quantum phase transition in Dirac systems by means of the wave-packet dynamics

    Directory of Open Access Journals (Sweden)

    E. Romera

    2012-12-01

    Full Text Available We study the signatures of phase transitions in the time evolution of wave-packets by analyzing two simple model systems: a graphene quantum dot model in a magnetic field and a Dirac oscillator in a magnetic field. We have characterized the phase transitions using the autocorrelation function. Our work also reveals that the description in terms of Shannon entropy of the autocorrelation function is a clear phase transition indicator.

  3. 450 Sorindeia warneckei Engl. (Anacardiaceae), une espèce multi ...

    African Journals Online (AJOL)

    Gabriel Segniagbeto

    33] dans les fourrés dunaires sur le littoral sableux du Togo.Les indices de diversité de Shannon (6,46) et d'équitabilité de Piélou. (0,89) montrent qu'il s'agit des formations bien diversifiées, présentant des affinités floristiques. Ces différences ...

  4. SpatEntropy: Spatial Entropy Measures in R

    OpenAIRE

    Altieri, Linda; Cocchi, Daniela; Roli, Giulia

    2018-01-01

    This article illustrates how to measure the heterogeneity of spatial data presenting a finite number of categories via computation of spatial entropy. The R package SpatEntropy contains functions for the computation of entropy and spatial entropy measures. The extension to spatial entropy measures is a unique feature of SpatEntropy. In addition to the traditional version of Shannon's entropy, the package includes Batty's spatial entropy, O'Neill's entropy, Li and Reynolds' contagion index, Ka...

  5. Uranium hydrogeochemical and stream sediment reconnaissance of the Pueblo NTMS quadrangel, Colorado, including concentrations of forty-three additional elements

    International Nuclear Information System (INIS)

    Shannon, S.S. Jr.

    1978-12-01

    This report is a supplement to the HSSR uranium evaluation report for the Pueblo quadrangle (Shannon, 1978), which presented the field and uranium data for the 861 water and 1060 sediment samples collected from 1402 locations in the quadrangle. This supplement presents those data again and the results of subsequent multielement analyses of those HSSR samples. In addition to uranium, the concentrations of 12 elements are presented for the waters and 42 elements for the sediments

  6. Influence de la saison sur l'ecodistribution des glossines, tabanides ...

    African Journals Online (AJOL)

    ... Stomoxys/trap/day in dry season. Their respective Shannon index was 0.4 in the rainy season and 0.23 in the dry season. The presence of vectors of trypanosomosis and filariosis in the baï of Momba suggests that strategies of flies control need to be put in place before the development of that particular ecological area for ...

  7. Sequential pattern recognition by maximum conditional informativity

    Czech Academy of Sciences Publication Activity Database

    Grim, Jiří

    2014-01-01

    Roč. 45, č. 1 (2014), s. 39-45 ISSN 0167-8655 R&D Projects: GA ČR(CZ) GA14-02652S; GA ČR(CZ) GA14-10911S Keywords : Multivariate statistics * Statistical pattern recognition * Sequential decision making * Product mixtures * EM algorithm * Shannon information Subject RIV: IN - Informatics, Computer Sci ence Impact factor: 1.551, year: 2014 http://library.utia.cas.cz/separaty/2014/RO/grim-0428565.pdf

  8. A tool for computing diversity and consideration on differences between diversity indices

    OpenAIRE

    Palaghianu, Ciprian

    2016-01-01

    Diversity represents a key concept in ecology, and there are various methods of assessing it. The multitude of diversity indices are quite puzzling and sometimes difficult to compute for a large volume of data. This paper promotes a computational tool used to assess the diversity of different entities. The BIODIV software is a user-friendly tool, developed using Microsoft Visual Basic. It is capable to compute several diversity indices such as: Shannon, Simpson, Pielou, Brillouin, Berger-Park...

  9. Possible extended forms of thermodynamic entropy

    International Nuclear Information System (INIS)

    Sasa, Shin-ichi

    2014-01-01

    Thermodynamic entropy is determined by a heat measurement through the Clausius equality. The entropy then formalizes a fundamental limitation of operations by the second law of thermodynamics. The entropy is also expressed as the Shannon entropy of the microscopic degrees of freedom. Whenever an extension of thermodynamic entropy is attempted, we must pay special attention to how its three different aspects just mentioned are altered. In this paper, we discuss possible extensions of the thermodynamic entropy. (paper)

  10. Use of a bed tiltmeter to study the structural features of a geological section

    Energy Technology Data Exchange (ETDEWEB)

    Yerokhin, V.V.

    1981-01-01

    A technique is described for interpreting models of results of bed tiltemetering based on the coordinate description of the tiltmetergram using a two-dimensional natural system of coordinates and using the Shannon entropy as a measure of symmetry and complexity of the tiltmeter model. A new description is provided for the set of programs for processing digital and analog data of three-and four-lever bed tiltmeters.

  11. Robust 1-Bit Compressive Sensing via Binary Stable Embeddings of Sparse Vectors

    Science.gov (United States)

    2011-04-15

    theory have led to significant interest in alternative sampling methods. Specifically, conventional sampling systems rely on the Shannon sampling theorem...28–31]. In this paper we develop strong theoretical reconstruction and robustness guarantees, in the same spirit as neoclassical guarantees provided...dimensional spaces. Although Grassmanian packing problems have been examined in the literature (e.g., in the context of frame theory [66]), to our

  12. Disability Inclusion in the Workplace

    Centers for Disease Control (CDC) Podcasts

    2016-12-28

    People with disabilities in America are twice as likely to be unemployed than people without disabilities – a fact that can be eliminated. Dr. Shannon Griffin-Blake tells us how we can give people with disabilities an opportunity to thrive in the workforce.  Created: 12/28/2016 by National Center on Birth Defects and Developmental Disabilities (NCBDDD).   Date Released: 12/28/2016.

  13. Role of parental autonomy support on self-determination in influencing diet and exercise motivation in older adolescents

    OpenAIRE

    Morrison SA; Dashiff CJ; Vance DE

    2013-01-01

    Shannon A Morrison, Carol J Dashiff, David E Vance School of Nursing, University of Alabama, Birmingham, AL, USA Abstract: Parental influence to promote autonomy and self-determination in their children as they grow up may also motivate them to exercise and eat healthily. Unfortunately, nutritious dietary consumption and physical activity frequency tend to decline during the adolescent years and reaches its lowest level as the adolescent nears adulthood. In this study of 132 freshman and sop...

  14. Accounting for imperfect detection in Hill numbers for biodiversity studies

    Science.gov (United States)

    Broms, Kristin M.; Hooten, Mevin B.; Fitzpatrick, Ryan M.

    2015-01-01

    Hill numbers unify biodiversity metrics by combining several into one expression. For example, species richness, Shannon's diversity index and the Gini–Simpson index are a few of the most used diversity measures, and they can be expressed as Hill numbers. Traditionally, Hill numbers have been calculated from relative abundance data, but the expression has been modified to use incidence data as well. We demonstrate an approach for estimating Hill numbers using an occupancy modelling framework that accounts for imperfect detection.

  15. Wavelet Packet Entropy in Speaker-Independent Emotional State Detection from Speech Signal

    OpenAIRE

    Mina Kadkhodaei Elyaderani; Seyed Hamid Mahmoodian; Ghazaal Sheikhi

    2015-01-01

    In this paper, wavelet packet entropy is proposed for speaker-independent emotion detection from speech. After pre-processing, wavelet packet decomposition using wavelet type db3 at level 4 is calculated and Shannon entropy in its nodes is calculated to be used as feature. In addition, prosodic features such as first four formants, jitter or pitch deviation amplitude, and shimmer or energy variation amplitude besides MFCC features are applied to complete the feature vector. Then, Support Vect...

  16. HIV-1 envelope sequence-based diversity measures for identifying recent infections.

    Directory of Open Access Journals (Sweden)

    Alexis Kafando

    Full Text Available Identifying recent HIV-1 infections is crucial for monitoring HIV-1 incidence and optimizing public health prevention efforts. To identify recent HIV-1 infections, we evaluated and compared the performance of 4 sequence-based diversity measures including percent diversity, percent complexity, Shannon entropy and number of haplotypes targeting 13 genetic segments within the env gene of HIV-1. A total of 597 diagnostic samples obtained in 2013 and 2015 from recently and chronically HIV-1 infected individuals were selected. From the selected samples, 249 (134 from recent versus 115 from chronic infections env coding regions, including V1-C5 of gp120 and the gp41 ectodomain of HIV-1, were successfully amplified and sequenced by next generation sequencing (NGS using the Illumina MiSeq platform. The ability of the four sequence-based diversity measures to correctly identify recent HIV infections was evaluated using the frequency distribution curves, median and interquartile range and area under the curve (AUC of the receiver operating characteristic (ROC. Comparing the median and interquartile range and evaluating the frequency distribution curves associated with the 4 sequence-based diversity measures, we observed that the percent diversity, number of haplotypes and Shannon entropy demonstrated significant potential to discriminate recent from chronic infections (p<0.0001. Using the AUC of ROC analysis, only the Shannon entropy measure within three HIV-1 env segments could accurately identify recent infections at a satisfactory level. The env segments were gp120 C2_1 (AUC = 0.806, gp120 C2_3 (AUC = 0.805 and gp120 V3 (AUC = 0.812. Our results clearly indicate that the Shannon entropy measure represents a useful tool for predicting HIV-1 infection recency.

  17. Information theory in molecular biology

    OpenAIRE

    Adami, Christoph

    2004-01-01

    This article introduces the physics of information in the context of molecular biology and genomics. Entropy and information, the two central concepts of Shannon's theory of information and communication, are often confused with each other but play transparent roles when applied to statistical ensembles (i.e., identically prepared sets) of symbolic sequences. Such an approach can distinguish between entropy and information in genes, predict the secondary structure of ribozymes, and detect the...

  18. Chromatic Derivatives, Chromatic Expansions and Associated Spaces

    OpenAIRE

    Ignjatovic, Aleksandar

    2009-01-01

    This paper presents the basic properties of chromatic derivatives and chromatic expansions and provides an appropriate motivation for introducing these notions. Chromatic derivatives are special, numerically robust linear differential operators which correspond to certain families of orthogonal polynomials. Chromatic expansions are series of the corresponding special functions, which possess the best features of both the Taylor and the Shannon expansions. This makes chromatic derivatives and ...

  19. Genetic Diversity of Selected Mangifera Species Revealed by Inter Simple Sequence Repeats Markers

    OpenAIRE

    Ariffin, Zulhairil; Md Sah, Muhammad Shafie; Idris, Salma; Hashim, Nuradni

    2015-01-01

    ISSR markers were employed to reveal genetic diversity and genetic relatedness among 28 Mangifera accessions collected from Yan (Kedah), Bukit Gantang (Perak), Sibuti (Sarawak), and Papar (Sabah). A total of 198 markers were generated using nine anchored primers and one nonanchored primer. Genetic variation among the 28 accessions of Mangifera species including wild relatives, landraces, and clonal varieties is high, with an average degree of polymorphism of 98% and mean Shannon index, H0=7.5...

  20. Megafaunal community structure of Andaman seamounts including the back-arc basin - A quantitative exploration from the Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Sautya, S.; Ingole, B.S.; Ray, D.; Stohr, S.; Samudrala, K.; KameshRaju, K.A.; Mudholkar, A.V.

    seamount fauna in the southwest Pacific. Nature 405: 944–947. 4. McClain C (2007) Seamounts: identity crisis or split personality? Journal of Biogeography 34: 2001–2008. 5. Clark MR, Rowden AA, Schlacher T, Williams A, Consalvey M, et al. (2010) The ecology.... 19. Pielou EC (1966) Species diversity and pattern diversity in the study of ecological succession. Journal of Theoretical Biology 10: 372–383. 20. Shannon CE, Weaver W (1963) The Mathematical Theory of Communication. Urbana, Illinois: University...

  1. Concepts and recent advances in generalized information measures and statistics

    CERN Document Server

    Kowalski, Andres M

    2013-01-01

    Since the introduction of the information measure widely known as Shannon entropy, quantifiers based on information theory and concepts such as entropic forms and statistical complexities have proven to be useful in diverse scientific research fields. This book contains introductory tutorials suitable for the general reader, together with chapters dedicated to the basic concepts of the most frequently employed information measures or quantifiers and their recent applications to different areas, including physics, biology, medicine, economics, communication and social sciences. As these quantif

  2. Correlation matrix for quartet codon usage

    CERN Document Server

    Frappat, L; Sorba, Paul

    2005-01-01

    It has been argued that the sum of usage probabilities for codons, belonging to quartets, that have as third nucleotide C or A, is independent of the biological species for vertebrates. The comparison between the theoretical correlation matrix derived from these sum rules and the experimentally computed matrix for 26 species shows a satisfactory agreement. The Shannon entropy, weakly depending on the biological species, gives further support. Suppression of codons containing the dinucleotides CG or AU is put in evidence.

  3. HVR-1 heterogeneity during treatment with telaprevir with or without pegylated interferon alfa-2a.

    Science.gov (United States)

    Lange, Christian M; Susser, Simone; Herrmann, Eva; Karey, Ursula; Kieffer, Tara L; Kwong, Ann D; Schinkel, Janke; Reesink, Henk W; Zeuzem, Stefan; Sarrazin, Christoph

    2011-11-01

    The extensive heterogeneity of the hypervariable region-1 (HVR-1) of hepatitis C virus (HCV) evidences the high genetic flexibility of HCV and was shown to be associated with virologic response to interferon-α-based therapies. However, the evolution of HVR-1 heterogeneity during treatment with directly acting antivirals has not been studied. Clonal sequence analysis of HVR-1 quasispecies in the serum of patients who were treated with telaprevir (3 × 750 mg/day) alone, telaprevir plus pegylated interferon-α-2a (pegIFN-α-2a), or pegIFN-α-2a plus placebo for 14 days was performed. HVR-1 heterogeneity, expressed as Shannon complexity and Hamming distance, was analyzed with virologic response and with the emergence of variants associated with resistance to telaprevir. HVR-1 heterogeneity at baseline was not associated with response to telaprevir-based therapy (Shannon complexity 0.34 vs. 0.55, p = 0.38; Hamming distance 0.15 vs. 0.23, p = 0.51; for patients with or without viral breakthrough, respectively). No significant changes in HVR-1 complexity were observed from baseline to day 4 of therapy in patients in whom a continued decline in HCV RNA was observed (Shannon complexity = 0.55 vs. 0.51, p = 0.67; Hamming distance = 0.23 vs. 0.25, p = 0.81, respectively). This was similar in patients with viral breakthrough associated with telaprevir-resistant variants (Shannon complexity = 0.34 vs. 0.42, p = 0.68; Hamming distance = 0.15 vs. 0.2, p = 0.50, at baseline and day 4, respectively). Baseline and on-treatment HVR-1 heterogeneity are not associated with early viral response to telaprevir-based therapy.

  4. Information theory of open fragmenting systems

    International Nuclear Information System (INIS)

    Gulminelli, F.; Juillet, O.; Chomaz, Ph.; Ison, M. J.; Dorso, C. O.

    2007-01-01

    An information theory description of finite systems explicitly evolving in time is presented. We impose a MaxEnt variational principle on the Shannon entropy at a given time while the constraints are set at a former time. The resulting density matrix contains explicit time odd components in the form of collective flows. As a specific application we consider the dynamics of the expansion in connection with heavy ion experiments. Lattice gas and classical molecular dynamics simulations are shown

  5. Kas te tantsiksite? / Christel Karits

    Index Scriptorium Estoniae

    Karits, Christel, 1966-

    2005-01-01

    Tantsuüritustest: 17. märtsil Rahvusooperis Estonia esietendunud balletist "Shannon Rose". Belgia koreograaf-lavastaja Hugo Fanari tantsulavastusest "Suveöö unenägu" 18. märtsil Vanemuise suures majas. Eesti kaasaegse tantsu koreograafide ülevaatefestivalist "Uus tants 7" 18.-20. märtsini Tallinnas. Moskva Music Halli Grand Revue Tallinna Linnahallis. Jazzkaare kevadballist Mustpeade majas Tallinnas

  6. Measurement properties of the EQ-5D-5L compared to the EQ-5D-3L in psoriasis patients.

    Science.gov (United States)

    Poór, Adrienn Katalin; Rencz, Fanni; Brodszky, Valentin; Gulácsi, László; Beretzky, Zsuzsanna; Hidvégi, Bernadett; Holló, Péter; Kárpáti, Sarolta; Péntek, Márta

    2017-12-01

    The purpose of this study is to assess the measurement properties of EQ-5D-5L compared to EQ-5D-3L in psoriasis patients. A cross-sectional survey was carried out at an academic dermatology clinic in Hungary. Psoriasis patients completed the EQ-5D-3L, EQ-5D-5L and Dermatology Life Quality Index (DLQI) questionnaires, and Psoriasis Area and Severity Index (PASI) was assessed. The UK value sets were used to calculate the 3L and 5L index scores. We tested the feasibility, ceiling effect, redistribution properties, the level of inconsistency and informativity (Shannon and Shannon Evenness indices). Spearman's rank-order correlations were performed between EQ-5D, EQ VAS, DLQI and PASI scores. Known-groups validity was evaluated by comparing age groups, clinical subtypes and treatment groups. Mean age of the 238 patients was 47 years, and 36.6% of them received biological therapy. Mean EQ-5D index score was 0.77 (SD: 0.26) with the 3L and 0.84 (SD: 0.19) with the 5L. The overall ceiling effect decreased from 37.1 (3L) to 32.9% (5L). Shannon index improved significantly for most dimensions, but Shannon Evenness index improved only in three dimensions. Compared to the 3L, the 5L version confirmed a better convergent validity with PASI, but not with the DLQI. Known-groups validity was equally demonstrated both for the 5L and 3L. The EQ-5D-5L seems to improve measurement properties by reducing ceiling effects, strengthening correlations with PASI and improving informativity. Follow-up studies are needed to test responsiveness and reliability in psoriasis.

  7. Tsallis distribution as a standard maximum entropy solution with 'tail' constraint

    International Nuclear Information System (INIS)

    Bercher, J.-F.

    2008-01-01

    We show that Tsallis' distributions can be derived from the standard (Shannon) maximum entropy setting, by incorporating a constraint on the divergence between the distribution and another distribution imagined as its tail. In this setting, we find an underlying entropy which is the Renyi entropy. Furthermore, escort distributions and generalized means appear as a direct consequence of the construction. Finally, the 'maximum entropy tail distribution' is identified as a Generalized Pareto Distribution

  8. Universal communication part II: channels with memory

    OpenAIRE

    Lomnitz, Yuval; Feder, Meir

    2012-01-01

    Consider communication over a channel whose probabilistic model is completely unknown vector-wise and is not assumed to be stationary. Communication over such channels is challenging because knowing the past does not indicate anything about the future. The existence of reliable feedback and common randomness is assumed. In a previous paper it was shown that the Shannon capacity cannot be attained, in general, if the channel is not known. An alternative notion of "capacity" was defined, as the...

  9. Managing the Growing Chinese Power in SE Asia: The U.S. Struggle to Maintain Power Projection in the Face of the Rising Middle Kingdom

    Science.gov (United States)

    2016-04-04

    Active Locations Spreadsheet from December 02, 2014. 32 Shannon Deebe and Mary Kaldor, The Ultimate Weapon is No Weapon (New York: Perseus Books ...available online at: https://history.state.gov/historicaldocuments/frus1945-50Intel/d269. See also Kennan’s original hand-annotated draft dated April 30...to further add to the dispersed scheme, DLA-E needs to investigate sites in other politically viable locations such as Cambodia, Brunei, and Malaysia

  10. Structure and Randomness of Continuous-Time, Discrete-Event Processes

    Science.gov (United States)

    Marzen, Sarah E.; Crutchfield, James P.

    2017-10-01

    Loosely speaking, the Shannon entropy rate is used to gauge a stochastic process' intrinsic randomness; the statistical complexity gives the cost of predicting the process. We calculate, for the first time, the entropy rate and statistical complexity of stochastic processes generated by finite unifilar hidden semi-Markov models—memoryful, state-dependent versions of renewal processes. Calculating these quantities requires introducing novel mathematical objects (ɛ -machines of hidden semi-Markov processes) and new information-theoretic methods to stochastic processes.

  11. Proceedings of the 3rd Biennial Conference of the Society for Implementation Research Collaboration (SIRC) 2015: advancing efficient methodologies through community partnerships and team science

    OpenAIRE

    Lewis, Cara; Darnell, Doyanne; Kerns, Suzanne; Monroe-DeVita, Maria; Landes, Sara J.; Lyon, Aaron R.; Stanick, Cameo; Dorsey, Shannon; Locke, Jill; Marriott, Brigid; Puspitasari, Ajeng; Dorsey, Caitlin; Hendricks, Karin; Pierson, Andria; Fizur, Phil

    2016-01-01

    Table of contents Introduction to the 3rd Biennial Conference of the Society for Implementation Research Collaboration: advancing efficient methodologies through team science and community partnerships Cara Lewis, Doyanne Darnell, Suzanne Kerns, Maria Monroe-DeVita, Sara J. Landes, Aaron R. Lyon, Cameo Stanick, Shannon Dorsey, Jill Locke, Brigid Marriott, Ajeng Puspitasari, Caitlin Dorsey, Karin Hendricks, Andria Pierson, Phil Fizur, Katherine A. Comtois A1: A behavioral economic perspective ...

  12. The role of coffee based agroforestry system in tree diversity conservation in Eastern Uganda

    DEFF Research Database (Denmark)

    Negawo, Worku Janka; Beyene, Dejene Nigatu

    2017-01-01

    Agroforestry farming system comprises considerable cultivated land area in the tropics. Despite the economic and social benefits of the system for farmers, it is also known to have an important role in the conservation of tree species. This study aims to evaluate the composition and distribution...... of indigenous tree species in coffee farms was lower than that of forest reserve. Similarly, tree species richness per plot, Shannon and Simpson diversity indexes of forest reserve were significantly (p

  13. Spatio-temporal variability of periphytic protozoa related to environment in the Niyang River, Tibet, China

    Science.gov (United States)

    Liu, Haiping; Ye, Shaowen; Yang, Xuefeng; Guo, Chuanbo; Zhang, Huijuan; Fan, Liqing; Zhang, Liangsong; Sovan, Lek; Li, Zhongjie

    2017-05-01

    The Niyang River, a main tributary of the Yarlung Zangbo River, is an important and typical plateau river ecosystem in Tibet, China. At present, few studies have focused on its aquatic living resources and river ecology. In this study, the composition, abundance, and diversity of periphytic protozoa were investigated across four seasons from 2008 to 2009 to better understand their spatio-temporal patterns and relationship to the environment. Our investigation shows that periphytic protozoa in the Niyang River contained 15 genera, belonged to Tubulinea, Alveolata, Discosea and Rhizaria, Alveolata possessed most genera, up to nine, with highest share in abundance, exceeding 50%, Difflugia and Glaucoma were dominant genera. Moreover, four diversity indices of periphytic protozoa, including species richness, total abundance, Shannon-Wiener diversity index and Pielou's evenness index, displayed a significant descending trend as the seasons continued, in the order of winter, spring, summer and autumn; with a significant difference existing between winter and summer (or autumn) for Shannon-Wiener diversity index and species richness ( P0.05). In addition, canonical correlation analysis (CCA) shows that the densities of Difflugia, Glaucomais, Enchelydium, Cyphoderia, and Enchelys correlate with water temperature, alkalinity, hardness, pH, and dissolved oxygen, respectively. Lastly, the relationship between periphytic protozoa diversity and the environmental factors of the Niyang River can be predicted using classification and regression trees (CART) annalysis, which suggests that the total abundance and Shannon-Wiener diversity index would be higher when the elevation is above 3 308 m. On the other hand, the Shannon-Wiener diversity index and Pielou's evenness index would be lower when pH and ammoniacal nitrogen have lower or higher values. Finally yet importantly, close attention should be paid to periphytic protozoa and its environment to ensure sustainable development

  14. A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

    Digital Repository Service at National Institute of Oceanography (India)

    Woebken, D.; Lam, P.; Kuypers, M.M.M.; Naqvi, S.W.A.; Kartal, B.; Strous, M.; Jetten, M.S.M.; Fuchs, B.M.; Amann, R.

    upwelling systems along with the Arabian Sea are among the most productive regions of the world’s oceans, as the upwelling of nitrate-rich deep water stimulates high biological production in surface waters (Chapman and Shannon, 1985; Friederich and Codispoti..., 1987; Copin-Montégut and Raimbault, 1994; Barber et al., 2001; Carr, 2002). High primary productivity results in a large downward flux of particulate organic matter and thus high heterotrophic activities in the under- lying waters and the formation...

  15. The Cumulative Effect of Manure on a Festuca Rubra Grasslands for 15 Years

    Directory of Open Access Journals (Sweden)

    Ioana VAIDA

    2017-11-01

    In this paper it was shown on which species the productivity of the grassland increased from the control variant to the fertilized variant with the maximum dose. Regarding the analysis of the phytodiversity, this tells us if the number of species is reduced in all the treatments, 10 t/ha of manure leads to an increase in phytocoenosis equivalence and implicitly to the Shannon index.

  16. Introduction to communications technologies a guide for non-engineers

    CERN Document Server

    Jones, Stephan; Groom, Frank M

    2008-01-01

    Systems and Models of Communications Technologies:Shannon-Weaver, von Neumann, and the OSI ModelBasic Concepts of Electricity Current Modulation Schemes Signaling Formats, Multiplexing, and Digital Transmissions Multiplexing PSTN to CPE Circuit Switching Mobile Wireless Technologies Packet Switching and Local Area Network TechnologyThe Language of the Internet: TCP/IP Network Security and Management Voice-Over-IP Wireless Local Area Networks Video Basics Digital Media The Basics of MPLS Networking.

  17. The Maximum Entropy Principle and the Modern Portfolio Theory

    Directory of Open Access Journals (Sweden)

    Ailton Cassetari

    2003-12-01

    Full Text Available In this work, a capital allocation methodology base don the Principle of Maximum Entropy was developed. The Shannons entropy is used as a measure, concerning the Modern Portfolio Theory, are also discuted. Particularly, the methodology is tested making a systematic comparison to: 1 the mean-variance (Markovitz approach and 2 the mean VaR approach (capital allocations based on the Value at Risk concept. In principle, such confrontations show the plausibility and effectiveness of the developed method.

  18. Heuristics for NP-hard optimization problems - simpler is better!?

    Directory of Open Access Journals (Sweden)

    Žerovnik Janez

    2015-11-01

    Full Text Available We provide several examples showing that local search, the most basic metaheuristics, may be a very competitive choice for solving computationally hard optimization problems. In addition, generation of starting solutions by greedy heuristics should be at least considered as one of very natural possibilities. In this critical survey, selected examples discussed include the traveling salesman, the resource-constrained project scheduling, the channel assignment, and computation of bounds for the Shannon capacity.

  19. CRAYFISH PREDATION EXPERIMENTS ON THE INTRODUCED ZEBRA MUSSEL, DREISSENA POLYMORPHA, IN IRELAND, AND THEIR POTENTIAL FOR BIOCONTROL.

    OpenAIRE

    REYNOLDS J. D.; DONOHOE R.

    2001-01-01

    The zebra mussel Dreissena polymorpha, native to the Aralo-Caspian region, has spread across Europe in the last 180 years. Although it reached England in 1820, it only arrived in Ireland in around 1995, probably attached to the hull of pleasure boats, and since then has spread through the lowland Shannon and Erne systems, which are linked by canal. While White-clawed crayfish Austropotamobius pallipes (Lereboullet) occur in these systems, Dreissena has not yet colonized sites with large crayf...

  20. Seven years of macroinfauna monitoring at Ladeira beach (Corrubedo Bay, NW Spain) after the Prestige oil spill**This research was supported in part by the Project VEM2004-08544, funded by the Spanish Ministry of Education and Science and the Project ‘Biodiversidad marina en el Atlántico’, Instituto Franklin-Universidad de Alcalá.

    OpenAIRE

    Junoy, Juan; Castellanos, Carolina; Manuel Viéitez, José; Riera, Rodrigo

    2013-01-01

    The exposed sandy beach of Ladeira (Corrubedo Bay, NW Spain) was sampledduring seven years (2003-2009) after the Prestige oil spill(winter 2002-03), todetermine interannual variations in the macroinfaunal community in two ways:(i) through ecological indices (species richness and abundances, Shannon'sdiversityand Pielou's evenness) and (ii) through the density of the most representativespecies. A clear zonation pattern was found, consisting of two zones:(i) the supralittoral, occupied by talit...

  1. Representations of same-sex relationships between female characters in all-ages comics: Princess Princess Ever After and Lumberjanes.

    Science.gov (United States)

    Gillingham, Erica

    2018-04-25

    Representations of lesbian, gay, bisexual, transgender, and queer (LGBTQ) characters in comics for an all-ages readership have emerged in the United States in the early twenty-first century. This essay examines the narrative constructions of same-sex relationships between female characters in two all-ages speculative fiction comics, Princess Princess Ever After by Katie O'Neill, and Lumberjanes, created by Shannon Watters, Grace Ellis, Noelle Stevenson, and Brooke Allen.

  2. An Entropy-Based Statistic for Genomewide Association Studies

    OpenAIRE

    Zhao, Jinying; Boerwinkle, Eric; Xiong, Momiao

    2005-01-01

    Efficient genotyping methods and the availability of a large collection of single-nucleotide polymorphisms provide valuable tools for genetic studies of human disease. The standard χ2 statistic for case-control studies, which uses a linear function of allele frequencies, has limited power when the number of marker loci is large. We introduce a novel test statistic for genetic association studies that uses Shannon entropy and a nonlinear function of allele frequencies to amplify the difference...

  3. Diversity and Seasonal Variation of Endophytic Fungi Isolated from Three Conifers in Mt. Taehwa, Korea

    OpenAIRE

    Kim, Chang-Kyun; Eo, Ju-Kyeong; Eom, Ahn-Heum

    2013-01-01

    The needled leaves of three conifer species were collected in Mt. Taehwa during different seasons of the year. Total 59 isolates and 19 species of endophytic fungi were isolated from the leaves and identified using morphological and molecular characteristics. As a result, Shannon index was different in its host plant; Larix kaempferi had a highest value of species diversity. According to the sampling season, 9 species of 19 species were isolated during fall season. The results suggest that th...

  4. HPV Vaccine (A Cup of Health with CDC)

    Centers for Disease Control (CDC) Podcasts

    Nearly all sexually active men and women will get infected with the human papillomavirus, or HPV, at some point in their lives. HPV can lead to serious health problems later in life, including certain cancers in both men and women. Since 2006, a vaccine has been available that protects against the most frequent cancer-causing types of HPV. In this podcast, Shannon Stokley discusses the importance of getting the HPV vaccine.

  5. Complexity analysis in particulate matter measurements

    Directory of Open Access Journals (Sweden)

    Luciano Telesca

    2011-09-01

    Full Text Available We investigated the complex temporal fluctuations of particulate matter data recorded in London area by using the Fisher-Shannon (FS information plane. In the FS plane the PM10 and PM2.5 data are aggregated in two different clusters, characterized by different degrees of order and organization. This results could be related to different sources of the particulate matter.

  6. The Benguela upwelling ecosystem lies adjacent to the south ...

    African Journals Online (AJOL)

    denise

    The Benguela upwelling ecosystem lies adjacent to the south-western coast of Africa, from southern Angola. (15°S) to Cape Agulhas (35°S; Fig. 1). Ecologically, it is split into separate northern and southern sub- systems by a zone of intense perennial upwelling near. Lüderitz (26–27.5°S; Shannon 1985). As is charac-.

  7. Seasonality of Lutzomyia fairtigi (Diptera: Psychodidae: Phlebotominae), a species endemic to Eastern Colombia

    OpenAIRE

    Molina, Jorge Alberto; Ortiz, Mario Iván; Guhl, Felipe

    2008-01-01

    The bionomics of sand flies (Diptera: Phlebotominae) was studied monthly for two consecutive years in alluvial gallery forests in the department of Casanare, Northeastern Colombia. A total of 2,365 specimens and 10 species were captured using CDC light traps and Shannon traps, and from diurnal resting places, and human landing collections. Lutzomyia fairtigi Martins (55%), Lutzomyia micropyga (Mangabeira) (20.9%), and Lutzomyia antunesi (Coutinho) (13.5%) were the predominant species in the r...

  8. Y. Laberge on Raphael-Hernadez and Steen’s AfroAsian encounters: Culture, History, Politics.

    Directory of Open Access Journals (Sweden)

    2008-12-01

    Full Text Available Heike Raphael-Hernadez and Shannon Steen,  Eds. AfroAsian encounters: Culture, History, Politics. New York: New York University Press, 2006.  xxiii + 342 p. An overlooked, interdisciplinary, often innovative book, Afroasian encounters: Culture, History, Politics offers a collection of seventeen new essays related to the African-Asian intersections, cosmopolitanism and cross-cultural theories. In terms of emerging disciplines, we already had Atlantic studies (or "Trans-Atlantic studies", an i...

  9. Network similarity and statistical analysis of earthquake seismic data

    OpenAIRE

    Deyasi, Krishanu; Chakraborty, Abhijit; Banerjee, Anirban

    2016-01-01

    We study the structural similarity of earthquake networks constructed from seismic catalogs of different geographical regions. A hierarchical clustering of underlying undirected earthquake networks is shown using Jensen-Shannon divergence in graph spectra. The directed nature of links indicates that each earthquake network is strongly connected, which motivates us to study the directed version statistically. Our statistical analysis of each earthquake region identifies the hub regions. We cal...

  10. Fault detection of the connection of lithium-ion power batteries based on entropy for electric vehicles

    Science.gov (United States)

    Yao, Lei; Wang, Zhenpo; Ma, Jun

    2015-10-01

    This paper proposes a method of fault detection of the connection of Lithium-Ion batteries based on entropy for electric vehicle. In electric vehicle operation process, some factors, such as road conditions, driving habits, vehicle performance, always affect batteries by vibration, which easily cause loosing or virtual connection between batteries. Through the simulation of the battery charging and discharging experiment under vibration environment, the data of voltage fluctuation can be obtained. Meanwhile, an optimal filtering method is adopted using discrete cosine filter method to analyze the characteristics of system noise, based on the voltage set when batteries are working under different vibration frequency. Experimental data processed by filtering is analyzed based on local Shannon entropy, ensemble Shannon entropy and sample entropy. And the best way to find a method of fault detection of the connection of lithium-ion batteries based on entropy is presented for electric vehicle. The experimental data shows that ensemble Shannon entropy can predict the accurate time and the location of battery connection failure in real time. Besides electric-vehicle industry, this method can also be used in other areas in complex vibration environment.

  11. Group-Wise Herding Behavior in Financial Markets: An Agent-Based Modeling Approach

    Science.gov (United States)

    Kim, Minsung; Kim, Minki

    2014-01-01

    In this paper, we shed light on the dynamic characteristics of rational group behaviors and the relationship between monetary policy and economic units in the financial market by using an agent-based model (ABM), the Hurst exponent, and the Shannon entropy. First, an agent-based model is used to analyze the characteristics of the group behaviors at different levels of irrationality. Second, the Hurst exponent is applied to analyze the characteristics of the trend-following irrationality group. Third, the Shannon entropy is used to analyze the randomness and unpredictability of group behavior. We show that in a system that focuses on macro-monetary policy, steep fluctuations occur, meaning that the medium-level irrationality group has the highest Hurst exponent and Shannon entropy among all of the groups. However, in a system that focuses on micro-monetary policy, all group behaviors follow a stable trend, and the medium irrationality group thus remains stable, too. Likewise, in a system that focuses on both micro- and macro-monetary policies, all groups tend to be stable. Consequently, we find that group behavior varies across economic units at each irrationality level for micro- and macro-monetary policy in the financial market. Together, these findings offer key insights into monetary policy. PMID:24714635

  12. Quantify the complexity of turbulence

    Science.gov (United States)

    Tao, Xingtian; Wu, Huixuan

    2017-11-01

    Many researchers have used Reynolds stress, power spectrum and Shannon entropy to characterize a turbulent flow, but few of them have measured the complexity of turbulence. Yet as this study shows, conventional turbulence statistics and Shannon entropy have limits when quantifying the flow complexity. Thus, it is necessary to introduce new complexity measures- such as topology complexity and excess information-to describe turbulence. Our test flow is a classic turbulent cylinder wake at Reynolds number 8100. Along the stream-wise direction, the flow becomes more isotropic and the magnitudes of normal Reynolds stresses decrease monotonically. These seem to indicate the flow dynamics becomes simpler downstream. However, the Shannon entropy keeps increasing along the flow direction and the dynamics seems to be more complex, because the large-scale vortices cascade to small eddies, the flow is less correlated and more unpredictable. In fact, these two contradictory observations partially describe the complexity of a turbulent wake. Our measurements (up to 40 diameters downstream the cylinder) show that the flow's degree-of-complexity actually increases firstly and then becomes a constant (or drops slightly) along the stream-wise direction. University of Kansas General Research Fund.

  13. New approaches in mathematical biology: Information theory and molecular machines

    International Nuclear Information System (INIS)

    Schneider, T.

    1995-01-01

    My research uses classical information theory to study genetic systems. Information theory was founded by Claude Shannon in the 1940's and has had an enormous impact on communications engineering and computer sciences. Shannon found a way to measure information. This measure can be used to precisely characterize the sequence conservation at nucleic-acid binding sites. The resulting methods, by completely replacing the use of ''consensus sequences'', provide better models for molecular biologists. An excess of conservation led us to do experimental work on bacteriophage T7 promoters and the F plasmid IncD repeats. The wonderful fidelity of telephone communications and compact disk (CD) music can be traced directly to Shannon's channel capacity theorem. When rederived for molecular biology, this theorem explains the surprising precision of many molecular events. Through connections with the Second Law of Thermodyanmics and Maxwell's Demon, this approach also has implications for the development of technology at the molecular level. Discussions of these topics are held on the internet news group bionet.info-theo. (author). (Abstract only)

  14. Wavelet Entropy-Based Traction Inverter Open Switch Fault Diagnosis in High-Speed Railways

    Directory of Open Access Journals (Sweden)

    Keting Hu

    2016-03-01

    Full Text Available In this paper, a diagnosis plan is proposed to settle the detection and isolation problem of open switch faults in high-speed railway traction system traction inverters. Five entropy forms are discussed and compared with the traditional fault detection methods, namely, discrete wavelet transform and discrete wavelet packet transform. The traditional fault detection methods cannot efficiently detect the open switch faults in traction inverters because of the low resolution or the sudden change of the current. The performances of Wavelet Packet Energy Shannon Entropy (WPESE, Wavelet Packet Energy Tsallis Entropy (WPETE with different non-extensive parameters, Wavelet Packet Energy Shannon Entropy with a specific sub-band (WPESE3,6, Empirical Mode Decomposition Shannon Entropy (EMDESE, and Empirical Mode Decomposition Tsallis Entropy (EMDETE with non-extensive parameters in detecting the open switch fault are evaluated by the evaluation parameter. Comparison experiments are carried out to select the best entropy form for the traction inverter open switch fault detection. In addition, the DC component is adopted to isolate the failure Isolated Gate Bipolar Transistor (IGBT. The simulation experiments show that the proposed plan can diagnose single and simultaneous open switch faults correctly and timely.

  15. [Effects of wheat root exudates on cucumber growth and soil fungal community structure].

    Science.gov (United States)

    Wu, Feng-Zhi; Li, Min; Cao, Peng; Ma, Ya-Fei; Wang, Li-Li

    2014-10-01

    With wheat as the donor plant and cucumber as the receptor plant, this study investigated the effects of root exudates from wheat cultivars with different allelopathic potentials (positive or negative) and companion cropping with wheat on soil fungal community structure by PCR-DGGE method and cucumber growth. Results showed that the wheat root exudates with positive allelopathic potential increased height and stem diameter of cucumber seedlings significantly, compared to the control seedlings (W) after 6 days and 12 days treatment, respectively. Also, wheat root exudates with both positive and negative allelopathic potential increased the seedling height of cucumber significantly after 18 days treatment. The wheat root exudates with different allelopathic potentials decreased the band number, Shannon and evenness indices of soil fungal community significantly in cucumber seedling rhizosphere, and those in the soil with the control seedlings (W) were also significantly higher than that in the control soil without seedlings (Wn) after 6 days treatment. The band number, Shannon and evenness indices in all the treatments were significantly higher than those in the control soil without seedlings (Wn) after 18 days treatment. Companion cropping with negative allelopathic potential wheat decreased the Shannon and evenness indices of soil fungi community significantly in the cucumber seedling rhizosphere, suggesting the wheat root exudates and companion cropping with wheat changed soil fungal community structure in the cucumber seedling rhizosphere. The results of DGGE map and the principal component analysis showed that companion cropping with wheat cultivars with different allelopathic potentials changed soil fungal community structure in cucumber seedling rhizosphere.

  16. Diversification criteria for power systems

    International Nuclear Information System (INIS)

    Kharbach, Mohammed

    2016-01-01

    Growing power demand, fuel availability and prices, technology changes, the environmental impacts of energy consumption, the changing regulatory environments and the uncertainties around such elements make the planning for optimal power mix a challenging task. The diversity approach is advocated as a most appropriate planning methodology for the optimal energy mix (Hickey et al., 2010). Shannon Wiener Index (SWI), which is the most cited diversity metric has been used to assess power systems diversity mainly from an energy perspective. To our best knowledge, there is no rigorous justification why energy has been the main variable used in diversification exercises rather than other variables such as capacity. We use a stylized power generation framework to show that diversity based on energy or capacity could lead to different outcomes in terms of vulnerability to fuel exposure, among others. We also introduce a Shannon Wiener Index ratio (SWIR) that we believe captures better the diversity of a power system compared to the standard SWI. - Highlights: • Ranking power systems, from a diversity perspective, based on one criteria has many shortcomings. • Diversity based on energy or capacity could lead to different outcomes in terms of vulnerability to fuel exposure, among others. • A Shannon Wiener Index ratio (SWIR) captures better the diversity of a power system compared to the standard SWI.

  17. [Influence of different types of surface on the diversity of soil fauna in Beijing Olympic Park].

    Science.gov (United States)

    Song, Ying-shi; Li, Xiao-wen; Li, Feng; Li, Hai-mei

    2015-04-01

    Soil fauna are impacted by urbanization. In order to explore the stress of different surface covers on diversity and community structure of soil fauna, we conducted this experiment in Beijing Olympic Park. In autumn of 2013, we used Baermann and Tullgren methods to study the diversity of soil fauna in the depth of 0-5 cm, 5-10 cm, 10-15 cm under four different land covers i.e. bared field (BF), totally impervious surface (TIS), partly impervious surface (PIS) and grassland (GL). The results showed that the total number of soil fauna in 100 cm3 was in order of GL (210) > PIS (193) > TIS (183) > BF (90), and the number of nematodes accounted for 72.0%-92.8% of the total number. On the vertical level, except for the TIS, the other three types of surface soil fauna had the surface gathered phenomenon. The Shannon diversity index and the Pielou evenness index of BF were lower, but the Simpson dominance index was higher than in the other land covers. The Shannon index and Margalef richness indes of GL were higher than those of the other land covers. The Shannon indexes of TIS and PIS were between the BF and GL. Except for the TIS and GL, the similarity indexes were between 0.4-0.5, indicating moderate non-similar characteristics. The diversity of soil fauna was significantly correlated with temperature, pH and available potassium.

  18. Coarsely resolved topography along protein folding pathways

    Science.gov (United States)

    Fernández, Ariel; Kostov, Konstantin S.; Berry, R. Stephen

    2000-03-01

    The kinetic data from the coarse representation of polypeptide torsional dynamics described in the preceding paper [Fernandez and Berry, J. Chem. Phys. 112, 5212 (2000), preceding paper] is inverted by using detailed balance to obtain a topographic description of the potential-energy surface (PES) along the dominant folding pathway of the bovine pancreatic trypsin inhibitor (BPTI). The topography is represented as a sequence of minima and effective saddle points. The dominant folding pathway displays an overall monotonic decrease in energy with a large number of staircaselike steps, a clear signature of a good structure-seeker. The diversity and availability of alternative folding pathways is analyzed in terms of the Shannon entropy σ(t) associated with the time-dependent probability distribution over the kinetic ensemble of contact patterns. Several stages in the folding process are evident. Initially misfolded states form and dismantle revealing no definite pattern in the topography and exhibiting high Shannon entropy. Passage down a sequence of staircase steps then leads to the formation of a nativelike intermediate, for which σ(t) is much lower and fairly constant. Finally, the structure of the intermediate is refined to produce the native state of BPTI. We also examine how different levels of tolerance to mismatches of side chain contacts influence the folding kinetics, the topography of the dominant folding pathway, and the Shannon entropy. This analysis yields upper and lower bounds of the frustration tolerance required for the expeditious and robust folding of BPTI.

  19. Large-Scale Spatio-Temporal Patterns of Mediterranean Cephalopod Diversity.

    Directory of Open Access Journals (Sweden)

    Stefanie Keller

    Full Text Available Species diversity is widely recognized as an important trait of ecosystems' functioning and resilience. Understanding the causes of diversity patterns and their interaction with the environmental conditions is essential in order to effectively assess and preserve existing diversity. While diversity patterns of most recurrent groups such as fish are commonly studied, other important taxa such as cephalopods have received less attention. In this work we present spatio-temporal trends of cephalopod diversity across the entire Mediterranean Sea during the last 19 years, analysing data from the annual bottom trawl survey MEDITS conducted by 5 different Mediterranean countries using standardized gears and sampling protocols. The influence of local and regional environmental variability in different Mediterranean regions is analysed applying generalized additive models, using species richness and the Shannon Wiener index as diversity descriptors. While the western basin showed a high diversity, our analyses do not support a steady eastward decrease of diversity as proposed in some previous studies. Instead, high Shannon diversity was also found in the Adriatic and Aegean Seas, and high species richness in the eastern Ionian Sea. Overall diversity did not show any consistent trend over the last two decades. Except in the Adriatic Sea, diversity showed a hump-shaped trend with depth in all regions, being highest between 200-400 m depth. Our results indicate that high Chlorophyll a concentrations and warmer temperatures seem to enhance species diversity, and the influence of these parameters is stronger for richness than for Shannon diversity.

  20. A study on the diversity of gastropods in Hormuz Island with first record of two species from the Iranian coast of the Persian Gulf

    Directory of Open Access Journals (Sweden)

    Nabiallah Kheirabadi

    2014-04-01

    Full Text Available This study was carried out to determine the diversity of gastropod species in the intertidal zone of Hormuz Island in the Persian Gulf. Seasonal sampling was conducted in 7 selected sites by throwing nine random quadrates (0.5×0.5 m in each site. Samples of each site were separately transferred to the laboratory and identified by the standard keys and verified by the Conchology Museum of Tokyo University of Science. Forty -nine gastropod species were identified, from which 2 species, Turicula nelliae and Linatella caudata were recorded for the first time from the Iranian coast of the Persian Gulf. The highest number of gastropods in one site was 28 species in site 1 (East of Marine Research Center, Also highest number of gastropods in one season was 35 species in winter and lowest number was in 28 species in summer. Simpson dominance index, Shannon-Wiener species diversity index, Margalef richness index and evenness index were calculated in the different sites and results showed that site 1 contained the most amount of the Shannon-Wiener and Margalef indices and site 6 (West of Island contained the most amount of the Simpson index. Also, site 3 (Mangrove forest showed the lowest amount of the Simpson, Shannon-Wiener and Margalef indices, while maximum amount of evenness index occurred in this site.

  1. Information and complexity measures in the interface of a metal and a superconductor

    Science.gov (United States)

    Moustakidis, Ch. C.; Panos, C. P.

    2018-06-01

    Fisher information, Shannon information entropy and Statistical Complexity are calculated for the interface of a normal metal and a superconductor, as a function of the temperature for several materials. The order parameter Ψ (r) derived from the Ginzburg-Landau theory is used as an input together with experimental values of critical transition temperature Tc and the superconducting coherence length ξ0. Analytical expressions are obtained for information and complexity measures. Thus Tc is directly related in a simple way with disorder and complexity. An analytical relation is found of the Fisher Information with the energy profile of superconductivity i.e. the ratio of surface free energy and the bulk free energy. We verify that a simple relation holds between Shannon and Fisher information i.e. a decomposition of a global information quantity (Shannon) in terms of two local ones (Fisher information), previously derived and verified for atoms and molecules by Liu et al. Finally, we find analytical expressions for generalized information measures like the Tsallis entropy and Fisher information. We conclude that the proper value of the non-extensivity parameter q ≃ 1, in agreement with previous work using a different model, where q ≃ 1.005.

  2. Stock Selection for Portfolios Using Expected Utility-Entropy Decision Model

    Directory of Open Access Journals (Sweden)

    Jiping Yang

    2017-09-01

    Full Text Available Yang and Qiu proposed and then recently improved an expected utility-entropy (EU-E measure of risk and decision model. When segregation holds, Luce et al. derived an expected utility term, plus a constant multiplies the Shannon entropy as the representation of risky choices, further demonstrating the reasonability of the EU-E decision model. In this paper, we apply the EU-E decision model to selecting the set of stocks to be included in the portfolios. We first select 7 and 10 stocks from the 30 component stocks of Dow Jones Industrial Average index, and then derive and compare the efficient portfolios in the mean-variance framework. The conclusions imply that efficient portfolios composed of 7(10 stocks selected using the EU-E model with intermediate intervals of the tradeoff coefficients are more efficient than that composed of the sets of stocks selected using the expected utility model. Furthermore, the efficient portfolio of 7(10 stocks selected by the EU-E decision model have almost the same efficient frontier as that of the sample of all stocks. This suggests the necessity of incorporating both the expected utility and Shannon entropy together when taking risky decisions, further demonstrating the importance of Shannon entropy as the measure of uncertainty, as well as the applicability of the EU-E model as a decision-making model.

  3. [Edge effect of the plant community structure on land-bridge islands in the Thousand Island Lake].

    Science.gov (United States)

    Su, Xiao-Fei; Yuan, Jin-Feng; Hu, Guang; Xu, Gao-Fu; Yu, Ming-Jian

    2014-01-01

    The research was conducted on 29 land-bridge islands in the Thousand Island Lake (TIL), where long-term monitoring plots were set up during 2009-2010. The community attributes including species richness, Shannon index, plant mean height, plant mean diameter at breast height (DBH) and plant density along the edge-interior gradient from edge to interior forest were calculated to investigate the edge effect. The results showed that the species richness and Shannon index were affected through the whole gradient (larger than 50 m), while the range of edge effect was 20-30 m on mean plant height, and 10 m on plant density and mean DBH. Community attributes differed significantly among the edge gradients. The species richness and Shannon index peaked at the intermediate edge gradient. Plant density decreased and plant mean height increased along the edge to interior gradient. All five community attributes were significantly associated with the edge gradient, also different functional groups, evergreen or deciduous species, trees or shrubs, shade tolerant or shade intolerant species, were differentially influenced by the edge effect. It was demonstrated the influence of edge effect on the fragmented forest community varied with community attributes and functional groups.

  4. Characterization of time series via Rényi complexity-entropy curves

    Science.gov (United States)

    Jauregui, M.; Zunino, L.; Lenzi, E. K.; Mendes, R. S.; Ribeiro, H. V.

    2018-05-01

    One of the most useful tools for distinguishing between chaotic and stochastic time series is the so-called complexity-entropy causality plane. This diagram involves two complexity measures: the Shannon entropy and the statistical complexity. Recently, this idea has been generalized by considering the Tsallis monoparametric generalization of the Shannon entropy, yielding complexity-entropy curves. These curves have proven to enhance the discrimination among different time series related to stochastic and chaotic processes of numerical and experimental nature. Here we further explore these complexity-entropy curves in the context of the Rényi entropy, which is another monoparametric generalization of the Shannon entropy. By combining the Rényi entropy with the proper generalization of the statistical complexity, we associate a parametric curve (the Rényi complexity-entropy curve) with a given time series. We explore this approach in a series of numerical and experimental applications, demonstrating the usefulness of this new technique for time series analysis. We show that the Rényi complexity-entropy curves enable the differentiation among time series of chaotic, stochastic, and periodic nature. In particular, time series of stochastic nature are associated with curves displaying positive curvature in a neighborhood of their initial points, whereas curves related to chaotic phenomena have a negative curvature; finally, periodic time series are represented by vertical straight lines.

  5. Plant biodiversity patterns on Helan Mountain, China

    Science.gov (United States)

    Jiang, Yuan; Kang, Muyi; Zhu, Yuan; Xu, Guangcai

    2007-09-01

    A case study was conducted to mountainous ecosystems in the east side of Helan Mountain, located in the transitional zone between steppe and desert regions of China, aiming to reveal the influences of four environmental factors on features of plant biodiversity—the spatial pattern of vegetation types, and the variation of α- and β-diversities in vegetation and flora. Field surveys on vegetation and flora and on environmental factors were conducted, and those field data were analyzed through CCA (Canonical Correspondence Analysis), and through Shannon-Weiner index for α-diversity and Sørensen index for β-diversity. The preliminary results are: (1) Ranked in terms of their impacts on spatial patterns of plant biodiversity, the four selected environmental factors would be: elevation > location > slope > exposure. (2) The variation of Shannon-Weiner index along the altitudinal gradient is similar to that of species amount within altitudinal belts spanning 200 m each, which suggests a unimodal relationship between the species richness and the environmental condition with regards to altitudinal factors. Both the Shannon-Weiner index and the species richness within each altitudinal belt reach their maximum at elevation range from about 1700 to 2000 m a.s.l. (3) The altitudinal extent with the highest Shannon-Weiner index is identical to the range, where both the deciduous broad-leaved forest, and the temperate evergreen coniferous and deciduous broad-leaved mixed forest distribute. The altitudinal range from 1700 to 2200 m a.s.l. is the sector with both high level of species richness and diversified vegetation types. (4) The variation of β-diversity along the altitude is consistent with the vegetation vertical zones. According to the Sørensen index between each pair of altitudinal belts, the transition of vegetation spectrum from one zone to another, as from the base horizontal zone, the desert steppe, to the first vertical zone, the mountain open forest and

  6. Fungos micorrízicos arbusculares como indicadores da recuperação de áreas degradadas no nordeste do Brasil Arbuscular mycorrhizal fungi as indicators of the recovery of degraded areas in northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Romero Francisco Vieira Carneiro

    2012-12-01

    Full Text Available Avaliaram-se atributos dos fungos micorrízicos arbusculares (FMAs na região sob desertificação de Gilbués, PI, Brasil, objetivando monitorar áreas sob diferentes níveis de degradação e recuperação do solo. Amostras de solo foram coletadas na camada de 0-0,2 m, durante o período seco de 2009 em quatro áreas pertencentes a um Argissolo, visualmente definidas como: REC - área em recuperação por contenção da erosão e plantio de gramíneas e leguminosas exóticas; DEG- área altamente degradada; IDEG - área moderadamente degradada; MN - área de vegetação nativa. Foram analisados a colonização radicular, o número mais provável de propágulos infectivos (NMP, índices de diversidade (Shannon-Wiener, diversidade e dominância de Simpson, equitabilidade de Pielou e Margalef e os atributos químicos do solo pH, H+Al, fósforo e matéria orgânica, usados como variáveis explicativas da variabilidade de atributos dos FMAs por meio de análises multivariadas. A colonização radicular e o NMP de propágulos foram superiores em REC. Os índices de Shannon-Wiener, dominância de Simpson e Margalef foram menores na área DEG, demonstrando serem bons indicadores de alterações na comunidade de FMAs em áreas degradadas. Pela análise de agrupamento hierárquico, a área DEG teve maior dissimilaridade em relação às demais. Pela análise por componentes principais, os índices de Shannon-Wiener, Margalef, de Simpson, a dominância de Simpson e os teores de fósforo foram os parâmetros que mais explicaram a variância total.Attributes of arbuscular mycorrhizal fungi (AMF were evaluated in a region in the process of desertification at Gilbués, Piauí, Brazil, with the objective of monitoring areas with different levels of soil degradation and recovery. Soil samples were collected at a depth of 0 to 0.2 m during the dry season of 2009 in four areas of ultisol, which were visually defined as: REC - an area under recovery by erosion

  7. Levantamento da fauna de Coleoptera que habita a carcaça de Sus scrofa L., em Curitiba, Paraná A study of the Coleoptera (Insecta fauna that inhabits Sus scrofa L. carcass in Curitiba, Paraná

    Directory of Open Access Journals (Sweden)

    Kleber Makoto Mise

    2007-09-01

    Full Text Available Este trabalho visou levantar a fauna de Coleoptera associada à carcaça de Sus scrofa L.,1758, espécie utilizada como modelo em Entomologia Forense. O acréscimo ou a substituição seqüencial das espécies de insetos pode ser utilizado para estimar o intervalo post mortem (IPM. O experimento foi realizado no Centro Politécnico (UFPR, de setembro de 2005 a setembro de 2006. A cada estação foi sacrificado um suíno de 15 kg no local, colocado em gaiola. A captura dos insetos foi realizada diariamente em bandeja posicionada abaixo da carcaça e em armadilha tipo Shannon modificada, e a cada 14 dias em cinco armadilhas do tipo pit-fall. Foram coletados 4.360 Coleoptera, pertencentes a 112 espécies de 26 famílias, 12 consideradas de importância forense. A coleta ativa realizada na bandeja foi responsável pela maior captura (2.023 espécimes, seguida pela armadilha Shannon modificada (2.016 espécimes e por último pelas do tipo pit-fall (324 espécimes. Staphylinidae foi mais coletada na bandeja e Shannon modificada, e Silphidae na armadilha pit-fall. Os principais hábitos encontrados foram predador/parasita (55%e onívoro (38,05%, com poucas espécies consideradas necrófagas (1,31%.This paper sought to assess the Coleoptera fauna associated with carcasses of Sus scrofa L., 1758, which is usually used as model in Forensic Entomology. The addition and sequential substitution of insect species could be used to estimate the post mortem interval (PMI. The present study took place in Centro Politécnico (UFPR, between september 2005 to september 2006. A pig weighting 15 kg was sacrificed each season and put inside a cage. Sampling is made daily in a tray placed below the carcass and in a Shannon modified trap, and each 14 days in five pit-fall traps. 4,360 beetles were collected, belonging to 112 species of 26 families, 12 were considered of forensic potential. The active collecting made in the tray was responsible for the largest number of

  8. Moss ciliated protozoa as bioindicators. A study on the urban area of Pisa (Italy); Protozoi ciliati del muschio come biondicatori. Uno studio nell'area urbana di Pisa

    Energy Technology Data Exchange (ETDEWEB)

    Verni, F.; Rosati, G. [Pisa Univ., Pisa (Italy). Dipt. di Etologia, Ecologia, Evoluzione

    2000-07-01

    Samples of moss were collected, every month for 7 months, from five zones of Pisa (S2, S3, S4, S5, S6) and a woody zone (S1) as control. For each sample the type and the number of the ciliate species as well as the number of individuals for each species were determined. Lead content was also measured. The data were statistically elaborated and compared. The diversity Shannon index (H) was calculated to determine the health state of ciliate communities. In any case an inverse correlation between H and the lead content was reported; the highest the H value, the lowest the lead content and vice versa. On the basis of the results here reported the use of Ciliates as biondicators appears suitable for the control of urban soil. An analysis like this appears advantageous as it is rather simple and cheap and allows to determine the possible variations in a real time. [Italian] Sono stati analizzati campioni di muschio prelevati, con cadenza mensile per 7 mesi, in 5 stazioni di Pisa (S2, S3, S4, S5, S6) e da una zona boscosa (S1), come controllo. Per ogni campione si e' proceduto all'identificazione dei Ciliati presenti, al conteggio delle specie e del numero di individui per specie, nonche' alla misurazione del piombo presente. I dati sono stati confrontati dopo elaborazione statistica. L'indice della diversita' di Shannon ha fornito informazioni sulla salute della comunita' dei Protozoi delle varie stazioni. In ogni caso risulta una correlazione inversa tra i valori dell'indice di Shannon e la quantita' di piombo: S5, la stazione piu' esposta al traffico, risulta quella piu' degradata. L'uso dei Ciliati come biondicatori risulta quindi appropriato e vantaggioso considerando che e' semplice, poco costoso e permette di valutare in tempi reali variazioni nell'ambiente.

  9. Diversity and Spatial-Temporal Distribution of Soil Macrofauna Communities Along Elevation in the Changbai Mountain, China.

    Science.gov (United States)

    Yin, Xiuqin; Qiu, Lili; Jiang, Yunfeng; Wang, Yeqiao

    2017-06-01

    The understanding of patterns of vertical variation and diversity of flora and fauna along elevational change has been well established over the past century. However, it is unclear whether there is an elevational distribution pattern for soil fauna. This study revealed the diversity and spatial-temporal distribution of soil macrofauna communities in different vegetation zones from forest to alpine tundra along elevation of the Changbai Mountain, China. The abundance, richness, and Shannon-Wiener diversity index of soil macrofauna communities were compared in four distinguished vegetation zones including the coniferous and broadleaved mixed forest zone, the coniferous forest zone, the subalpine dwarf birch (Betula ermanii) forest zone, and the alpine tundra zone. Soil macrofauna were extracted in May, July, and September of 2009. In each season, the abundance and richness of the soil macrofauna decreased with the ascending elevation. The Shannon-Wiener diversity indices of the soil macrofauna were higher in the vegetation zones of lower elevation than of higher elevation. Significant differences were observed in the abundance, richness, and Shannon-Wiener diversity index for the studied vegetation zones. Soil macrofauna congregated mainly to the litter layer in the low-elevation areas and in the 0-5 cm soil layer of the higher elevation areas. The results emphasized that the diversity of soil macrofauna communities decreased as the elevation increased and possess the distinct characteristics of zonation in the mountain ecosystem. The diversity and distribution of soil macrofauna communities were influenced by mean annual precipitation, altitude, annual radiation quantity, and mean annual temperature. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  10. Quantifying selection and diversity in viruses by entropy methods, with application to the haemagglutinin of H3N2 influenza

    Science.gov (United States)

    Pan, Keyao; Deem, Michael W.

    2011-01-01

    Many viruses evolve rapidly. For example, haemagglutinin (HA) of the H3N2 influenza A virus evolves to escape antibody binding. This evolution of the H3N2 virus means that people who have previously been exposed to an influenza strain may be infected by a newly emerged virus. In this paper, we use Shannon entropy and relative entropy to measure the diversity and selection pressure by an antibody in each amino acid site of H3 HA between the 1992–1993 season and the 2009–2010 season. Shannon entropy and relative entropy are two independent state variables that we use to characterize H3N2 evolution. The entropy method estimates future H3N2 evolution and migration using currently available H3 HA sequences. First, we show that the rate of evolution increases with the virus diversity in the current season. The Shannon entropy of the sequence in the current season predicts relative entropy between sequences in the current season and those in the next season. Second, a global migration pattern of H3N2 is assembled by comparing the relative entropy flows of sequences sampled in China, Japan, the USA and Europe. We verify this entropy method by describing two aspects of historical H3N2 evolution. First, we identify 54 amino acid sites in HA that have evolved in the past to evade the immune system. Second, the entropy method shows that epitopes A and B on the top of HA evolve most vigorously to escape antibody binding. Our work provides a novel entropy-based method to predict and quantify future H3N2 evolution and to describe the evolutionary history of H3N2. PMID:21543352

  11. Coral Reef Health Indices versus the Biological, Ecological and Functional Diversity of Fish and Coral Assemblages in the Caribbean Sea.

    Science.gov (United States)

    Díaz-Pérez, Leopoldo; Rodríguez-Zaragoza, Fabián Alejandro; Ortiz, Marco; Cupul-Magaña, Amílcar Leví; Carriquiry, Jose D; Ríos-Jara, Eduardo; Rodríguez-Troncoso, Alma Paola; García-Rivas, María Del Carmen

    2016-01-01

    This study evaluated the relationship between the indices known as the Reef Health Index (RHI) and two-dimensional Coral Health Index (2D-CHI) and different representative metrics of biological, ecological and functional diversity of fish and corals in 101 reef sites located across seven zones in the western Caribbean Sea. Species richness and average taxonomic distinctness were used to asses biological estimation; while ecological diversity was evaluated with the indices of Shannon diversity and Pielou´s evenness, as well as by taxonomic diversity and distinctness. Functional diversity considered the number of functional groups, the Shannon diversity and the functional Pielou´s evenness. According to the RHI, 57.15% of the zones were classified as presenting a "poor" health grade, while 42.85% were in "critical" grade. Based on the 2D-CHI, 28.5% of the zones were in "degraded" condition and 71.5% were "very degraded". Differences in fish and coral diversity among sites and zones were demonstrated using permutational ANOVAs. Differences between the two health indices (RHI and 2D-CHI) and some indices of biological, ecological and functional diversity of fish and corals were observed; however, only the RHI showed a correlation between the health grades and the species and functional group richness of fish at the scale of sites, and with the species and functional group richness and Shannon diversity of the fish assemblages at the scale of zones. None of the health indices were related to the metrics analyzed for the coral diversity. In general, our study suggests that the estimation of health indices should be complemented with classic community indices, or should at least include diversity indices of fish and corals, in order to improve the accuracy of the estimated health status of coral reefs in the western Caribbean Sea.

  12. Wavelet entropy of BOLD time series: An application to Rolandic epilepsy.

    Science.gov (United States)

    Gupta, Lalit; Jansen, Jacobus F A; Hofman, Paul A M; Besseling, René M H; de Louw, Anton J A; Aldenkamp, Albert P; Backes, Walter H

    2017-12-01

    To assess the wavelet entropy for the characterization of intrinsic aberrant temporal irregularities in the time series of resting-state blood-oxygen-level-dependent (BOLD) signal fluctuations. Further, to evaluate the temporal irregularities (disorder/order) on a voxel-by-voxel basis in the brains of children with Rolandic epilepsy. The BOLD time series was decomposed using the discrete wavelet transform and the wavelet entropy was calculated. Using a model time series consisting of multiple harmonics and nonstationary components, the wavelet entropy was compared with Shannon and spectral (Fourier-based) entropy. As an application, the wavelet entropy in 22 children with Rolandic epilepsy was compared to 22 age-matched healthy controls. The images were obtained by performing resting-state functional magnetic resonance imaging (fMRI) using a 3T system, an 8-element receive-only head coil, and an echo planar imaging pulse sequence ( T2*-weighted). The wavelet entropy was also compared to spectral entropy, regional homogeneity, and Shannon entropy. Wavelet entropy was found to identify the nonstationary components of the model time series. In Rolandic epilepsy patients, a significantly elevated wavelet entropy was observed relative to controls for the whole cerebrum (P = 0.03). Spectral entropy (P = 0.41), regional homogeneity (P = 0.52), and Shannon entropy (P = 0.32) did not reveal significant differences. The wavelet entropy measure appeared more sensitive to detect abnormalities in cerebral fluctuations represented by nonstationary effects in the BOLD time series than more conventional measures. This effect was observed in the model time series as well as in Rolandic epilepsy. These observations suggest that the brains of children with Rolandic epilepsy exhibit stronger nonstationary temporal signal fluctuations than controls. 2 Technical Efficacy: Stage 3 J. Magn. Reson. Imaging 2017;46:1728-1737. © 2017 International Society for Magnetic

  13. Bacterial community changes in copper and PEX drinking water pipeline biofilms under extra disinfection and magnetic water treatment.

    Science.gov (United States)

    Inkinen, J; Jayaprakash, B; Ahonen, M; Pitkänen, T; Mäkinen, R; Pursiainen, A; Santo Domingo, J W; Salonen, H; Elk, M; Keinänen-Toivola, M M

    2018-02-01

    To study the stability of biofilms and water quality in pilot scale drinking water copper and PEX pipes in changing conditions (extra disinfection, magnetic water treatment, MWT). Next-generation sequencing (NGS) of 16S ribosomal RNA genes (rDNA) to describe total bacterial community and ribosomal RNA (rRNA) to describe active bacterial members in addition to traditional microbiological methods were applied. Biofilms from control copper and PEX pipes shared same most abundant bacteria (Methylobacterium spp., Sphingomonas spp., Zymomonas spp.) and average species diversities (Shannon 3·8-4·2) in rDNA and rRNA libraries, whereas few of the taxa differed by their abundance such as lower total Mycobacterium spp. occurrence in copper (disinfection (total chlorine increase from c. 0·5 to 1 mg l -1 ) affected total and active population in biofilms seen as decrease in many bacterial species and diversity (Shannon 2·7, P disinfected copper and PEX samples formed separate clusters in unweighted non-metric multidimensional scaling plot (rRNA) similarly to MWT-treated biofilms of copper (but not PEX) pipes that instead showed higher species diversity (Shannon 4·8, P < 0·05 interaction). Minor chlorine dose addition increased selection pressure and many species were sensitive to chlorination. Pipe material seemed to affect mycobacteria occurrence, and bacterial communities with MWT in copper but not in PEX pipes. This study using rRNA showed that chlorination affects especially active fraction of bacterial communities. Copper and PEX differed by the occurrence of some bacterial members despite similar community profiles. © 2017 The Society for Applied Microbiology.

  14. Effect of trapping methods on the estimation of alpha diversity of a phlebotomine sandfly assemblage in southern Mexico.

    Science.gov (United States)

    Rodríguez-Rojas, J J; Rebollar-Téllez, E A

    2017-12-01

    The aims of the study were to (a) investigate the effect of trapping methods on alpha diversity; and (b) enhance the knowledge of the sandfly assemblage in the state of Quintana Roo. Field work was undertaken in a tropical forest of southern Mexico from August 2013 to July 2014. Sampling was conducted monthly during three consecutive nights. For each trapping night, 12 different types of trap were operated from 18.00 to 24.00 hours in four transects. Measures of alpha community diversity were based on the quantification of the number of species (Chao 2, Jackknife 2, Clench's equation, Margalef's index) and the community structure, as well as the dominance (Simpson and Berger-Parker indexes) and evenness (Shannon's entropy index, true diversity of the Jost and Pielou index). With a total sampling effort of 1728 night-traps, 16 101 phlebotomine sandflies were collected; they represented two genera and 13 species. Diversity estimates of 100% (Chao 2 and Clench's equation) and 85% (Jackknife 2) of potential species in the study area were calculated. Shannon traps and CDC light traps indicated the largest number of species, but only Shannon traps showed the greatest abundance. This inventory of sandflies is an important activity to enhance our knowledge of sandfly assemblages and guilds. The ultimate goal of studying alpha diversity in sandflies would be to have a better understanding of the population dynamics and all complex networks of interactions that may, in turn, be associated with the epidemiology of the disease. © 2017 The Royal Entomological Society.

  15. Tree canopy composition in the tropical mountain rainforest of los Tuxtlas, Mexico

    Directory of Open Access Journals (Sweden)

    Mario Vázquez-Torres

    2008-09-01

    Full Text Available We studied the arboreal composition of the tropical mountain rainforest’s upper canopy in the San Martín Pajapán volcano, Tatahuicapan, Veracruz, México (18°26’ N; 94°17’ W. Two forest stands were studied, one in an exposed position and one protected. The Shannon index of diversity and the Jaccard index of affinity were calculated to calculate affinities between plots and between stands of different environmental exposures. The average Shannon value was 3.391 +0.121 for the exposed zone and 3.511 +0.53 for the protected zone. There is a greater species number and tree density in the exposed stand. This difference might be caused be different orientation to dominant winds. The diversity index value is high is similar between the stands, despite the important difference in species composition. Rev. Biol. Trop. 56 (3: 1571-1579. Epub 2008 September 30.El objetivo de este trabajo fue conocer la composición arbórea del bosque tropical lluvioso en el volcán de San Martín Pajapán. Se comparan dos áreas en diferente exposición: expuesta a los vientos dominates y protegida de los vientos. El valor medio del índice de diversidad de Shannon es de 3.391 +0.121 para la zona expuesta y 3.511 +0.53 para la protegida. El número de especies y la densidad de árboles por hectárea es mayor en la zona expuesta y la composición de especies es muy diferente entre las parcelas.

  16. Introduction of High Throughput Magnetic Resonance T2-Weighted Image Texture Analysis for WHO Grade 2 and 3 Gliomas.

    Science.gov (United States)

    Kinoshita, Manabu; Sakai, Mio; Arita, Hideyuki; Shofuda, Tomoko; Chiba, Yasuyoshi; Kagawa, Naoki; Watanabe, Yoshiyuki; Hashimoto, Naoya; Fujimoto, Yasunori; Yoshimine, Toshiki; Nakanishi, Katsuyuki; Kanemura, Yonehiro

    2016-01-01

    Reports have suggested that tumor textures presented on T2-weighted images correlate with the genetic status of glioma. Therefore, development of an image analyzing framework that is capable of objective and high throughput image texture analysis for large scale image data collection is needed. The current study aimed to address the development of such a framework by introducing two novel parameters for image textures on T2-weighted images, i.e., Shannon entropy and Prewitt filtering. Twenty-two WHO grade 2 and 28 grade 3 glioma patients were collected whose pre-surgical MRI and IDH1 mutation status were available. Heterogeneous lesions showed statistically higher Shannon entropy than homogenous lesions (p = 0.006) and ROC curve analysis proved that Shannon entropy on T2WI was a reliable indicator for discrimination of homogenous and heterogeneous lesions (p = 0.015, AUC = 0.73). Lesions with well-defined borders exhibited statistically higher Edge mean and Edge median values using Prewitt filtering than those with vague lesion borders (p = 0.0003 and p = 0.0005 respectively). ROC curve analysis also proved that both Edge mean and median values were promising indicators for discrimination of lesions with vague and well defined borders and both Edge mean and median values performed in a comparable manner (p = 0.0002, AUC = 0.81 and p image metrics that reflect lesion texture described on T2WI. These two metrics were validated by readings of a neuro-radiologist who was blinded to the results. This observation will facilitate further use of this technique in future large scale image analysis of glioma.

  17. Importance of Habitat Heterogeneity in Richness and Diversity of Moths (Lepidoptera) in Brazilian Savanna.

    Science.gov (United States)

    Braga, Laura; Diniz, Ivone Rezende

    2015-06-01

    Moths exhibit different levels of fidelity to habitat, and some taxa are considered as bioindicators for conservation because they respond to habitat quality, environmental change, and vegetation types. In this study, we verified the effect of two phytophysiognomies of the Cerrado, savanna and forest, on the diversity distribution of moths of Erebidae (Arctiinae), Saturniidae, and Sphingidae families by using a hierarchical additive partitioning analysis. This analysis was based on two metrics: species richness and Shannon diversity index. The following questions were addressed: 1) Does the beta diversity of moths between phytophysiognomies add more species to the regional diversity than the beta diversity between sampling units and between sites? 2) Does the distribution of moth diversity differ among taxa? Alpha and beta diversities were compared with null models. The additive partitioning of species richness for the set of three Lepidoptera families identified beta diversity between phytophysiognomies as the component that contributed most to regional diversity, whereas the Shannon index identified alpha diversity as the major contributor. According to both species richness and the Shannon index, beta diversity between phytophysiognomies was significantly higher than expected by chance. Therefore, phytophysiognomies are the most important component in determining the richness and composition of the community. Additive partitioning also indicated that individual families of moths respond differently to the effect of habitat heterogeneity. The integrity of the Cerrado mosaic of phytophysiognomies plays a crucial role in maintaining moth biodiversity in the region. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  18. Abundance of Enterobacteriaceae in the colon mucosa in diverticular disease.

    Science.gov (United States)

    Linninge, Caroline; Roth, Bodil; Erlanson-Albertsson, Charlotte; Molin, Göran; Toth, Ervin; Ohlsson, Bodil

    2018-02-15

    To compare gut bacterial diversity and amount of Enterobacteriaceae in colonic mucosa between patients with and without diverticular disease (DD). Patients in a stable clinical condition with planned elective colonoscopy were included. Blood samples and colon mucosa biopsies were collected at the colonoscopy. Study questionnaires including questions about gastrointestinal symptoms were completed by the patients and physicians. DNA from mucosa samples was isolated and the amount of Enterobacteriaceae was estimated using PCR assay. Terminal restriction fragment length polymorphism was applied to assess microbial diversity. Diversity was estimated by calculations of richness (number of terminal restriction fragments) and Shannon-Wiener and Simpson's indices. A total of 51 patients were included, 16 patients with DD [68 (62-76) years] and 35 controls [62 (40-74) years] without any diverticula. Patients with DD had significantly higher levels of Enterobacteriaceae than those without DD ( P = 0.043), and there was an inverse relationship between the amount of Enterobacteriaceae and the Simpson's index (rs = -0.361, P = 0.033) and the Shannon-Wiener index (rs = -0.299, P = 0.081). The Simpson's index ( P = 0.383), Shannon-Wiener index ( P = 0.401) or number of restrictions fragments ( P = 0.776) did not differ between DD and controls. The majority of patients experienced gastrointestinal symptoms, and 22 patients (43.1%) fulfilled the criteria for irritable bowel syndrome, with no difference between the groups ( P = 0.212). Demography, socioeconomic status, lifestyle habits, inflammatory biomarkers, or symptoms were not related to the amount of Enterobacteriaceae or bacterial diversity. Patients with DD had higher amount of Enterobacteriaceae in the colon mucosa compared to patients without diverticula.

  19. [Changes of bacterial community structure on reusing domestic sewage of Daoxianghujing Hotel to landscape water].

    Science.gov (United States)

    Zhu, Jing-nan; Wang, Xiao-dan; Zhai, Zhen-hua; Ma, Wen-lin; Li, Rong-qi; Wang, Xue-lian; Li, Yan-hong

    2010-05-01

    A 16S rDNA library was used to evaluate the bacterial diversity and identify dominant groups of bacteria in different treatment pools in the domestic sewage system of the Beijing Daoxianghujing Hotel. The results revealed that there were many types of bacteria in the hotel domestic sewage, and the bacterial Shannon-Weaver diversity index was 3.12. In addition, epsilon Proteobacteria was found to be the dominant group with the ratio of 32%. In addition, both the CFB phylum, Fusobacteria, gamma Proteobacteria and Firmicutes were also reached to 9%-15%. After treated with the reclaimed water station, the bacterial Shannon-Weaver diversity index was reduced to 2. 41 and beta Proteobacteria became the dominant group and occupied 73% of the total clones. However, following artificial wetland training, the bacterial Shannon-Weaver diversity index in the sample increased to 3.38, Actinobacteria arrived to 33% and became the most dominant group; Cyanobacteria reached to 26%, and was the second dominant group. But, the control sample comprised 38% Cyanobacteria, and mainly involved in Cyanobium, Synechoccus and Microcystis, with ratios of 47.1%, 17.6% and 8.8%, respectively. Some bacteria of Microcystis aenruginosa were also detected, which probably resulted in the light bloom finally. Therefore, the bacterial diversity and community structures changed in response to treatment of the hotel domestic sewage; there was no cyanobacteria bloom explosion in the treated water. This study will aid in investigation the changes of microbial ecology in different types of water and providing the useful information for enhancing the cyanobacteria blooms control from ecological angle.

  20. Community assessment techniques and the implications for rarefaction and extrapolation with Hill numbers.

    Science.gov (United States)

    Cox, Kieran D; Black, Morgan J; Filip, Natalia; Miller, Matthew R; Mohns, Kayla; Mortimor, James; Freitas, Thaise R; Greiter Loerzer, Raquel; Gerwing, Travis G; Juanes, Francis; Dudas, Sarah E

    2017-12-01

    Diversity estimates play a key role in ecological assessments. Species richness and abundance are commonly used to generate complex diversity indices that are dependent on the quality of these estimates. As such, there is a long-standing interest in the development of monitoring techniques, their ability to adequately assess species diversity, and the implications for generated indices. To determine the ability of substratum community assessment methods to capture species diversity, we evaluated four methods: photo quadrat, point intercept, random subsampling, and full quadrat assessments. Species density, abundance, richness, Shannon diversity, and Simpson diversity were then calculated for each method. We then conducted a method validation at a subset of locations to serve as an indication for how well each method captured the totality of the diversity present. Density, richness, Shannon diversity, and Simpson diversity estimates varied between methods, despite assessments occurring at the same locations, with photo quadrats detecting the lowest estimates and full quadrat assessments the highest. Abundance estimates were consistent among methods. Sample-based rarefaction and extrapolation curves indicated that differences between Hill numbers (richness, Shannon diversity, and Simpson diversity) were significant in the majority of cases, and coverage-based rarefaction and extrapolation curves confirmed that these dissimilarities were due to differences between the methods, not the sample completeness. Method validation highlighted the inability of the tested methods to capture the totality of the diversity present, while further supporting the notion of extrapolating abundances. Our results highlight the need for consistency across research methods, the advantages of utilizing multiple diversity indices, and potential concerns and considerations when comparing data from multiple sources.

  1. Electron transfer processes occurring on platinum neural stimulating electrodes: pulsing experiments for cathodic-first, charge-balanced, biphasic pulses for 0.566  ⩽  k  ⩽  2.3 in rat subcutaneous tissues

    Science.gov (United States)

    Kumsa, Doe W.; Bhadra, Narendra; Hudak, Eric M.; Mortimer, J. Thomas

    2017-10-01

    Objective. Our mission is twofold: (1) find a way to safely inject more charge through platinum electrodes than the Shannon limit (k  =  1.75) permits and (2) nurture an interest in the neural stimulation community to understand the electron transfer process occurring on neural stimulating electrodes. Approach. We report here on measurements of the electrode potential, performed on platinum neural stimulating electrodes in the subcutaneous space of an anesthetized rat under neural stimulation conditions. Main results. The results for six platinum electrodes with areas ranging from 0.2 mm2 to 12.7 mm2 were similar to prior results in sulfuric acid, except that the measured potentials were shifted negative 0.36 V because of the pH difference between the two media. The anodic ‘end’ potential, measured at t  =  20 ms after the onset of the biphasic current pulse, was the primary focus of the data collected because previous results had shown that as charge injection crosses the Shannon limit (k  =  1.75), this potential moves into a range where platinum surface oxidation and dissolution is likely to occur. The behavior of V e(t  =  20 ms) over a range of electrode surface areas studied was consistent with our sulfuric acid study. Implicit, but little noticed, in Shannon’s formulation is that small and large platinum electrodes behave the same in terms of k value; our data supports this idea. Significance. We hypothesize that the k  =  1.75 Shannon limit for safe stimulation designates a charge-injection boundary above which platinum toxicity becomes a relevant consideration for living cells around an electrode, a possibility that can be directly tested, and is a vital step forward in mission (1).

  2. Environmental and mucosal microbiota and their role in childhood asthma.

    Science.gov (United States)

    Birzele, L T; Depner, M; Ege, M J; Engel, M; Kublik, S; Bernau, C; Loss, G J; Genuneit, J; Horak, E; Schloter, M; Braun-Fahrländer, C; Danielewicz, H; Heederik, D; von Mutius, E; Legatzki, A

    2017-01-01

    High microbial diversity in the environment has been associated with lower asthma risk, particularly in children exposed to farming. It remains unclear whether this effect operates through an altered microbiome of the mucosal surfaces of the airways. DNA from mattress dust and nasal samples of 86 school age children was analyzed by 454 pyrosequencing of the 16S rRNA gene fragments. Based on operational taxonomic units (OTUs), bacterial diversity and composition were related to farm exposure and asthma status. Farm exposure was positively associated with bacterial diversity in mattress dust samples as determined by richness (P = 8.1 × 10 -6 ) and Shannon index (P = 1.3 × 10 -5 ). Despite considerable agreement of richness between mattress and nasal samples, the association of richness with farming in nasal samples was restricted to a high gradient of farm exposure, that is, exposure to cows and straw vs no exposure at all. In mattress dust, the genera Clostridium, Facklamia, an unclassified genus within the family of Ruminococcaceae, and six OTUs were positively associated with farming. Asthma was inversely associated with richness [aOR = 0.48 (0.22-1.02)] and Shannon index [aOR = 0.41 (0.21-0.83)] in mattress dust and to a lower extent in nasal samples [richness aOR 0.63 = (0.38-1.06), Shannon index aOR = 0.66 (0.39-1.12)]. The stronger inverse association of asthma with bacterial diversity in mattress dust as compared to nasal samples suggests microbial involvement beyond mere colonization of the upper airways. Whether inhalation of metabolites of environmental bacteria contributes to this phenomenon should be the focus of future research. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  3. Nucleotide fluctuation of radiation-resistant Halobacterium sp. NRC-1 single-stranded DNA-binding protein (RPA) genes

    Science.gov (United States)

    Holden, Todd; Tremberger, G., Jr.; Cheung, E.; Subramaniam, R.; Gadura, N.; Schneider, P.; Sullivan, R.; Flamholz, A.; Lieberman, D.; Cheung, T. D.

    2009-08-01

    The Single-Stranded DNA-Binding Protein (RPA) Genes in gamma ray radiation-resistant halophilic archaeon Halobacterium sp. NRC-1 were analyzed in terms of their nucleotide fluctuations. In an ATCG sequence, each base was assigned a number equal to its atomic number. The resulting numerical sequence was the basis of the statistical analysis in this study. Fractal analysis using the Higuchi method gave fractal dimensions of 2.04 and 2.06 for the gene sequences VNG2160 and VNG2162, respectively. The 16S rRNA sequence has a fractal dimension of 1.99. The di-nucleotide Shannon entropy values were found to be negatively correlated with the observed fractal dimensions (R2~ 0.992, N=3). Inclusion of Deinococcus radiodurans Rad-A in the regression analysis decreases the R2 slightly to 0.98 (N=4). A third VNG2163 RPA gene of unknown function but with upregulation activity under irradiation was found to have a fractal dimension of 2.05 and a Shannon entropy of 3.77 bits. The above results are similar to those found in bacterial Deinococcus radiodurans and suggest that their high radiation resistance property would have favored selection of CG di-nucleotide pairs. The two transcription factors TbpD (VNG7114) and TfbA (VNG 2184) were also studied. Using VNG7114, VNG2184, and VNG2163; the regression analysis of fractal dimension versus Shannon entropy shows that R2 ~ 0.997 for N =3. The VNG2163 unknown function may be related to the pathways with transcriptions closely regulated to sequences VNG7114 and VNG2184.

  4. Microbial Species and Functional Diversity in Rice Rhizosphere of High-yield Special Ecological Areas

    Directory of Open Access Journals (Sweden)

    PAN Li-yuan

    2016-11-01

    Full Text Available Taoyuan, Yunnan Province is a special eco-site which keeps the highest yield records of rice cultivation in small planting areas. Soil microbial species and functional diversity were evaluated using cultivation method and BIOLOG ecoplates. The results showed that the microbial community of the high yield region was more abundant, and the total microbial population was 2 times of the control, furthermore, the areas belonged to the healthy "bacteria" soil, which was showed as bacteria > actinomycetes > fungi. Bacteria were the dominant populations in the rhizosphere of high yielding rice field, and the yield formation of rice was not correlated with the depth of soil layers. In order to obtain more species diversity information, Shannon diversity index H, Shannon evenness index E and Simpson index D were analyzed, and the results showed that microbial community diversity and evenness were not the main differences between the high and general yield areas. Then, the functional diversity of soil microbial community was investigated through the average well color development(AWCD and diversity index analyses. The results of AWCD analysis indicated that the metabolic activity of soil microbial community in high yield paddy soils were stronger than the control. Moreover, the difference range from large to small showed as tillering stage > harvest period > seedling period > rotation period, the stronger the rice growth, the greater the difference between the high yield region and the control. At tillering stage and harvest stage, due to the vigorous plant growth, the root exudates were rich, and the microbial communities of high yield paddy soils showed a strong metabolic activity and strong ability to use carbon sources. The results of Shannon, Simpson and McIntosh indices analysis indicated that common microbial species was not a key factor affecting the yield of rice. Tillering stage was a key period for the growth of high yield rice, and many

  5. Diversidad y mecanismos de dispersión de árboles de la Isla Gorgona y de los bosques húmedos tropicales del Pacífico colombo-ecuatoriano

    OpenAIRE

    Yockteng Roxana; Jaime Cavelier

    1998-01-01

    En este trabajo se hizo una comparación entre la flora de la isla Gorgona (Colombia) y la de los bosques del Chocó biogeográfico (Colombia y Ecuador). Para esta comparación se utilizaron curvas de acumulación de especies e índices de riqueza y diversidad, tanto publicadas por diferentes autores o generadas a partir de los inventarios florísticos originales. La riqueza del bosque de la isla Gorgona calculada a partir de curvas especie-área y del índice de diversidad de Shannon fue inferior a l...

  6. Time dependence of entropy flux and entropy production for a dynamical system driven by noises with coloured cross-correlation

    Institute of Scientific and Technical Information of China (English)

    Xie Wen-Xian; Xu Wei; Cai Li

    2007-01-01

    This paper shows the Fokker-Planck equation of a dynamical system driven by coloured cross-correlated white noises in the absence and presence of a small external force. Based on the Fokker-Planck equation and the definition of Shannon's information entropy, the time dependence of entropy flux and entropy production can be calculated. The present results can be used to explain the extremal behaviour of time dependence of entropy flux and entropy production in view of the dissipative parameter γ of the system, coloured cross-correlation time τ and coloured cross-correlation strength λ.

  7. [Ecological characteristics of phytoplankton in Suining tributary under bio-remediation].

    Science.gov (United States)

    Liu, Dongyan; Zhao, Jianfu; Zhang, Yalei; Ma, Limin

    2005-04-01

    Based on the analyses of phytoplankton community in the treated and untreated reaches of Suining tributary of Suzhou River, this paper studied the effects of bio-remediation on phytoplankton. As the result of the remediation, the density and Chl-a content of phytoplankton in treated reach were greatly declined, while the species number and Shannon-Wiener diversity index ascended obviously. The percentage of Chlorophyta and Baeillariophyta ascended, and some species indicating medium-and oligo-pollution were found. All of these illustrated that bio-remediation engineering might significantly benefit to the improvement of phytoplankton community structure and water quality.

  8. Statistical mechanics of error-correcting codes

    Science.gov (United States)

    Kabashima, Y.; Saad, D.

    1999-01-01

    We investigate the performance of error-correcting codes, where the code word comprises products of K bits selected from the original message and decoding is carried out utilizing a connectivity tensor with C connections per index. Shannon's bound for the channel capacity is recovered for large K and zero temperature when the code rate K/C is finite. Close to optimal error-correcting capability is obtained for finite K and C. We examine the finite-temperature case to assess the use of simulated annealing for decoding and extend the analysis to accommodate other types of noisy channels.

  9. Caracterización microecologica de nemátodos parásitos presentes en caprinos de zonas áridas de Venezuela

    Directory of Open Access Journals (Sweden)

    Gustavo Morales

    1986-06-01

    Full Text Available Se determinó que los caprinos de las zonas áridas de Venezuela son parasitados por lassiguientes especies de nemátodos: Haemonchus contortus, Trichostrongylus axei, T. colubriformis, Cooperia curticei, Oesophagostomun columbianum, Skrjabinema ovis y Trichuris globulosa. Los valores del índice de diversidad de Shannon-Weaver oscilaron entre 0,045 y 1,73 bits (X = 1,15 ± 0,24 bits. La diversidad máxima por mes presenta valores que van desde 1 a 2,80 bits (X = 2,49 ± 0,28 bits y la equitabilidad varió de 0,045 a 0,67 (X = 0,44 ± 0,09. Los valores obtenidos con los datos agrupados en un solo bloque son de 1,25 bits, 2,80 bits y 0,40 para el índice de diversidad de Shannon-Weaver, la diversidad máxima y la equitabilidad respectivamente. En lo referente a las asociaciones parasitarias, se encontró un primer grupo conformado por T. axei, T. colubriformis y H. contortus, un segundo grupo por T. colubriformis, H. contortus y O. columbianum, y un tercero integrado por T. colubriformis, S. ovis y T. globulosa. Los resultados obtenidos permiten además, sugerir em torno al control químico que en los meses en los cuales el valor del índice de diversidad de Shannon-Weaver se aproxime al de la diversidad máxima y el del índice de equitabilidad se aproxime a la unidad, se pueden utilizar antihelmínticos de amplio espectro.Goats from the Venezuelan northem arid zones were found infested by the following nematodes: Haemonchus contortus, Trichostrongylus axei, T. colubriformis, Cooperia curticei, Oesophagostomum columbianum, Skrjabinema ovis y Trichuris globulosa. The Shannon-Weaver index of diversity values oscillated between 0.045 and 1.73 bits (X = 1.16 ± 0.24 bits. The maximum value of montly diversity ranged from 1 to 2.80 bits (X = 2.49 ± 0.28 bits and the equitability ranged from 0.045 to 0.67 (X = 0.44 ± 0.09. Parasitic associations were found among 1 T. axei, T. colubriformis and H. contortus, 2 T. colubriformis, H. contornus and O

  10. Seasonality of Mansonia titillans during dam construction, Biritiba-Mirim, São Paulo State, Brazil

    OpenAIRE

    D'Avila,Frederico Alves; Gomes,Almério de Castro

    2013-01-01

    A two and a half year survey was conducted at a dam in southeastern Brazil. Shannon Traps were used for sampling. Kruskal-Wallis test showed little relation between rainfall and abundance. The data clearly show three abundance peaks, all of them in the end of the dry season, in consonance with the scarce literature existent. Although Kruskal-Wallis Test did not find a clear preference for the dry season, Pairwise Wilcoxon Rank Test revealed a significant difference between Fall and Spring sam...

  11. Keldysh formalism for multiple parallel worlds

    International Nuclear Information System (INIS)

    Ansari, M.; Nazarov, Y. V.

    2016-01-01

    We present a compact and self-contained review of the recently developed Keldysh formalism for multiple parallel worlds. The formalism has been applied to consistent quantum evaluation of the flows of informational quantities, in particular, to the evaluation of Renyi and Shannon entropy flows. We start with the formulation of the standard and extended Keldysh techniques in a single world in a form convenient for our presentation. We explain the use of Keldysh contours encompassing multiple parallel worlds. In the end, we briefly summarize the concrete results obtained with the method.

  12. Keldysh formalism for multiple parallel worlds

    Science.gov (United States)

    Ansari, M.; Nazarov, Y. V.

    2016-03-01

    We present a compact and self-contained review of the recently developed Keldysh formalism for multiple parallel worlds. The formalism has been applied to consistent quantum evaluation of the flows of informational quantities, in particular, to the evaluation of Renyi and Shannon entropy flows. We start with the formulation of the standard and extended Keldysh techniques in a single world in a form convenient for our presentation. We explain the use of Keldysh contours encompassing multiple parallel worlds. In the end, we briefly summarize the concrete results obtained with the method.

  13. Evaluación y estado de conservación de la diversidad biológica: Flora

    OpenAIRE

    Ticona Cárdenas, Ronald Javier

    2014-01-01

    El presente estudio tuvo como objetivo evaluar la flora, fauna y biota acuática del valle y cuenca del Huaral y su importancia en el desarrollo de la comunidad local. Se desarrolló una investigación de tipo descriptiva correlacional. El periodo de monitoreo realizado a los puntos de Flora, Fauna e Hidrobiología correspondieron a la época seca. Se emplearon los índices de Shannon, Simpson, Margalef y Menhinick como análisis de la diversidad, asi como el índice de similaridad de Morisita Horn. ...

  14. The mathematical theory of signal processing and compression-designs

    Science.gov (United States)

    Feria, Erlan H.

    2006-05-01

    The mathematical theory of signal processing, named processor coding, will be shown to inherently arise as the computational time dual of Shannon's mathematical theory of communication which is also known as source coding. Source coding is concerned with signal source memory space compression while processor coding deals with signal processor computational time compression. Their combination is named compression-designs and referred as Conde in short. A compelling and pedagogically appealing diagram will be discussed highlighting Conde's remarkable successful application to real-world knowledge-aided (KA) airborne moving target indicator (AMTI) radar.

  15. Correcting quantum errors with entanglement.

    Science.gov (United States)

    Brun, Todd; Devetak, Igor; Hsieh, Min-Hsiu

    2006-10-20

    We show how entanglement shared between encoder and decoder can simplify the theory of quantum error correction. The entanglement-assisted quantum codes we describe do not require the dual-containing constraint necessary for standard quantum error-correcting codes, thus allowing us to "quantize" all of classical linear coding theory. In particular, efficient modern classical codes that attain the Shannon capacity can be made into entanglement-assisted quantum codes attaining the hashing bound (closely related to the quantum capacity). For systems without large amounts of shared entanglement, these codes can also be used as catalytic codes, in which a small amount of initial entanglement enables quantum communication.

  16. Discrete Choice and Rational Inattention

    DEFF Research Database (Denmark)

    Fosgerau, Mogens; Melo, Emerson; de Palma, André

    2017-01-01

    This paper establishes a general equivalence between discrete choice and rational inattention models. Matejka and McKay (2015, AER) showed that when information costs are modelled using the Shannon entropy, the result- ing choice probabilities in the rational inattention model take the multinomial...... logit form. We show that when information costs are modelled using a class of generalized entropies, then the choice probabilities in any rational inattention model are observationally equivalent to some additive random utility discrete choice model and vice versa. This equivalence arises from convex...

  17. A dynamic balanced scorecard for identification internal process factor

    Directory of Open Access Journals (Sweden)

    Javad sofiyabadi

    2012-08-01

    Full Text Available We present a dynamic balanced score card (BSC to investigate the strategic internal process management factors. The proposed dynamic BSC emphasizes on internal processes aspect, and using VIKOR and Shannon Entropy, determinants the internal processes, process management and improvement and all important factors are ranked. The current study first introduces dynamic BSC and examines effective factors on the process. The proposed model focuses on internal processes perspective of BSC and determines importance degree of each factor is used using VIKOR decision-making techniques.

  18. Revision of the Neotropical Xanthandrus Verral (Diptera, Syrphidae

    Directory of Open Access Journals (Sweden)

    Borges Zuleica M.

    2003-01-01

    Full Text Available The Neotropical genus Xanthandrus Verral, 1901 is revised. Six species are redescribed: X. bucephalus (Wiedemann, 1830, X. cubanus Fluke, 1936, X. mellinoides (Macquart, 1846, X. mexicanus Curran, 1930, X. nitidulus Fluke, 1937, and X. plaumanni Fluke, 1937. Three species are included based on original descriptions: X. flavomaculatus Shannon, 1927, X. palliatus (Fluke, 1945, and X. simplex (Loew, 1861. New synonyms proposed: Argentinomyia longicornis (Walker, 1837 = Xanthandrus biguttatus Hull, 1945 syn. nov., and Xanthandrus bucephalus (Wiedemann, 1830 = Melanostoma quadrinotata Bigot, 1884 syn. nov. Description of terminalia, a key for Neotropical species, and illustrations are also presented.

  19. Análise multivariada da fauna edáfica em diferentes sistemas de preparo e cultivo do solo Multivariate analysis of soil fauna under different soil tillage and crop management systems

    OpenAIRE

    Dilmar Baretta; Álvaro Luiz Mafra; Julio Cesar Pires Santos; Cassandro Vidal Talamini do Amarante; Ildegardis Bertol

    2006-01-01

    O objetivo deste trabalho foi avaliar o efeito de sistemas de preparo e cultivo do solo sobre a diversidade de animais da fauna edáfica, por meio de técnicas de análise multivariada. Na análise canônica discriminante, os preparos conservacionistas com sucessão de culturas foram separados em relação aos tratamentos com rotação de culturas. Os grupos Acarina, Hymenoptera, Isopoda e Collembola, e o índice de Shannon (H) foram os atributos que mais contribuíram para separar os tratamentos. A anál...

  20. Spatial and temporal abundance of three sylvatic yellow fever vectors in the influence area of the Manso hydroelectric power plant, Mato Grosso, Brazil.

    Science.gov (United States)

    Ribeiro, A L M; Miyazaki, R D; Silva, M; Zeilhofer, P

    2012-01-01

    Human biting catches of sylvatic yellow fever (SYF) vectors were conducted at eight stations in the influence area of the Manso hydroelectric power plant (Central Brazil) in sampling campaigns every 2 mo from July 2000 to November 2001. In total, 206 individuals were captured and classified as one of three species important for the transmission of SYF in Mato Grosso state: Haemagogus (Haemagogus) janthinomys (Dyar, 1921); Haemagogus (Conopostegus) leucocelaenus (Dyar & Shannon, 1924); and Sabethes (Sabethoides) chloropterus (Humboldt, 1819). The highest vector abundance was observed during the rainy season (November through March) and SYF vectors were present in all sampling points throughout the year, mainly in riparian and shadowed transitional forests at shadowed ramps.

  1. Lactate uptake against a concentration gradient

    DEFF Research Database (Denmark)

    Nordström, Carl-Henrik; Nielsen, Troels Halfeld; Nielsen, Hans Boye

    2014-01-01

    The recently published article by Jalloh et al (Jalloh I, Helmy A, Shannon RJ, Gallagher CN, Menon D, Carpenter K, Hutchinson P. Lactate uptake by the injured human brain - evidence from an arterio-venous gradient and cerebral microdialysis study. J Neurotrauma. 2013 Aug 22. [Epub ahead of print......]) concludes that lactate may be transported across the blood brain barrier into the brain against a concentration gradient. Unfortunately the authors have misinterpreted the concept of analytical imprecision and their conclusion is based on analytical artifact. As the topic of lactate transport into the brain...

  2. Time Dependence of Entropy Flux and Entropy Production of a Dissipative Dynamical System Driven by Non-Gaussian Noise

    International Nuclear Information System (INIS)

    Guo Yongfeng; Xu Wei; Li Dongxi; Xie Wenxian

    2008-01-01

    A stochastic dissipative dynamical system driven by non-Gaussian noise is investigated. A general approximate Fokker-Planck equation of the system is derived through a path-integral approach. Based on the definition of Shannon's information entropy, the exact time dependence of entropy flux and entropy production of the system is calculated both in the absence and in the presence of non-equilibrium constraint. The present calculation can be used to interpret the interplay of the dissipative constant and non-Gaussian noise on the entropy flux and entropy production

  3. Biodiversity and species-environment relationships of the demersal fish assemblage at the Great Meteor Seamount (subtropical NE Atlantic), sampled by different trawls

    DEFF Research Database (Denmark)

    Fock, H.; Uiblein, F.; Köster, Fritz

    2002-01-01

    , respectively, to 583.98 ind. m(-1) h(-1) in 1998. Gear effects and an effect of gear over time accounted for 47.1% and 20% of species variability. Further significant factors were time of day and habitat, while season was not significant. A total of 43 species was collected. Including supplementary species...... information, a grand total of 46 species was found associated with the Great Meteor Seamount. Diversity was higher in 1967 and 1970 (Shannon's diversity: H'=2.5 and 1.6) than in 1998 (H'=0.9). Species-environment relationships are discussed in terms of a sound-scattering layer-interception hypothesis, i...

  4. The Northeast Greenland Sirius Water Polynya dynamics and variability inferred from satellite imagery

    DEFF Research Database (Denmark)

    Pedersen, Jørn Bjarke Torp; Kaufmann, Laura Hauch; Kroon, Aart

    2010-01-01

    One of the most prominent polynyas in Northeast Greenland, already noted by the early expeditions in the area, is located around Shannon Ø and Pendulum Øer between 75° and 74°N in the transition zone between the fast ice and pack ice. This study names the polynya the ‘Sirius Water Polynya...... and summer regimes in the seasonal evolution of the polynya. During the winter regime, both the size of and the ice cover within the polynya varies significantly on a temporal and spatial scale. Intermittent wind-driven openings of the polynya alternate with periods of increasing ice cover. Some of the most...

  5. Abtasttheorem

    Science.gov (United States)

    Plaßmann, Wilfried

    Das Abtasttheorem von Shannon ist von grundlegender Bedeutung für die Nachrichtentechnik, besonders aber für den Fall, dass ein Analogsignal in ein digital codiertes Signal überführt werden soll. Es legt fest, wie oft ein analoges Signal abgetastet werden muss, um es, digital codiert, wieder ″fehlerfrei″ in ein analoges Signal zurückwandeln zu können. Außerdem ist bezüglich der im Analogsignal enthaltenen Frequenzen eine bestimmte Bedingung zu erfüllen. Die Ableitung ist hier in verkürzter Form dargestellt.

  6. Nichtkontinuierliche (zeitdiskrete) Signale

    Science.gov (United States)

    Plaßmann, Wilfried

    Zeitdiskrete Signale werden häufig aus zeitkontinuierlichen Signalen durch Abtastung erzeugt. Dass beide Signale gleichwertig sind, zeigt das Abtasttheorem (Kap. 116) von Shannon, sofern die Bedingung nach (116.2), f_{ab}≈(2{,}2 {\\ldots} 4)\\cdot fg) eingehalten wird. Digitale Signale haben Vorteile: Einfache Speicherung, Weiterverarbeitung in Rechnern, wenig störanfällige Übertragung. Für die Bearbeitung dieser Signale dienen die im Kapitel dargestellten Hilfsmittel: Diskrete Fouriertransformation; Schnelle Fouriertransformation; z-Transformation: Darstellung, Sätze zur z-Transformation, Korrespondenzen zu Zeitfunktionen, Beispiele.

  7. Rate in template-directed polymer synthesis.

    Science.gov (United States)

    Saito, Takuya

    2014-06-01

    We discuss the temporal efficiency of template-directed polymer synthesis, such as DNA replication and transcription, under a given template string. To weigh the synthesis speed and accuracy on the same scale, we propose a template-directed synthesis (TDS) rate, which contains an expression analogous to that for the Shannon entropy. Increasing the synthesis speed accelerates the TDS rate, but the TDS rate is lowered if the produced sequences are diversified. We apply the TDS rate to some production system models and investigate how the balance between the speed and the accuracy is affected by changes in the system conditions.

  8. Generalized Measure of Departure from No Three-Factor Interaction Model for 2 x 2 x K Contingency Tables

    Directory of Open Access Journals (Sweden)

    Yohei Ban

    2008-12-01

    Full Text Available For 2 x 2 x K contingency tables, Tomizawa considered a Shannon entropy type measure to represent the degree of departure from a log-linear model of no three-factor interaction (the NOTFI model. This paper proposes a generalization of Tomizawa's measure for 2 x 2 x K tables. The measure proposed is expressed by using Patil-Taillie diversity index or Cressie-Read power-divergence. A special case of the proposed measure includes Tomizawa's measure. The proposed measure would be useful for comparing the degrees of departure from the NOTFI model in several tables.

  9. Divergence from factorizable distributions and matroid representations by partitions

    Czech Academy of Sciences Publication Activity Database

    Matúš, František

    2009-01-01

    Roč. 55, č. 12 (2009), s. 5375-5381 ISSN 0018-9448 R&D Projects: GA AV ČR IAA100750603; GA ČR GA201/04/0393 Institutional research plan: CEZ:AV0Z10750506 Keywords : Information divergence * relative entropy * Shannon entropy * exponential family * hierarchical model * log-linear model * contingency table * Gibbs distribution * matroid representation * secret sharing scheme * maximum likelihood. Subject RIV: BA - General Mathematics Impact factor: 2.357, year: 2009 http://library.utia.cas.cz/separaty/2009/MTR/matus-divergence from factorizable distributions and matroid representations by partitions.pdf

  10. The Methods of Information Security Based on Blurring of System

    Directory of Open Access Journals (Sweden)

    Mikhail Andreevich Styugin

    2016-03-01

    Full Text Available The paper present the model of researching system with own known input, output and set of discrete internal states. These theoretical objects like an absolutely protected from research system and an absolutely indiscernible data transfer channel are defined. Generalization of the principle of Shannon Secrecy are made. The method of system blurring is defined. Theoretically cryptographically strong of absolutely indiscernible data transfer channel is proved and its practical unbreakable against unreliable pseudo random number generator is shown. This paper present system with blurring of channel named Pseudo IDTC and shown asymptotic complexity of break this system compare with AES and GOST.

  11. Information-theoretical aspects of quantum-mechanical entropy

    International Nuclear Information System (INIS)

    Wehrl, A.

    1990-01-01

    Properties of the quantum ( = von Neumann) entropy S(ρ) -k Trρ lnρ, ρ being a compact operator, are proved first, and differences against the classical case, e.g. the Shannon entropy, are worked out. The main result is on the strong subadditivity of this quantum entropy. Then another entropy, a function not of the state but of the dynamics of the system, is considered as a quantum analogue of the classical Kolmogorov-Sinai-entropy. An attempt in defining such a quantity had only recently sucess in a paper of Connes, Narnhofer and Thirring. A definition of this entropy is given. 34 refs

  12. Messages, meanings and symbols the communication of information

    CERN Document Server

    Meadow, Charles T

    2006-01-01

    A deep and penetrating exploration of the key concepts of information and communications sciences by one of its founders, this book covers everything in its subject that you want to know more about including the bedrock topics of signs, symbols, information, and communication, all considered from an historical and foundational perspective that is satisfying to the beginning student and worthwhile for practitioners of long standing. All the major players are given their role, from Shannon and Weaver to Tim Berners-Lee, with Marshall McLuhan an engaging participant.

  13. Quantum skew divergence

    Energy Technology Data Exchange (ETDEWEB)

    Audenaert, Koenraad M. R., E-mail: koenraad.audenaert@rhul.ac.uk [Department of Mathematics, Royal Holloway University of London, Egham TW20 0EX, United Kingdom and Department of Physics and Astronomy, University of Ghent, S9, Krijgslaan 281, B-9000 Ghent (Belgium)

    2014-11-15

    In this paper, we study the quantum generalisation of the skew divergence, which is a dissimilarity measure between distributions introduced by Lee in the context of natural language processing. We provide an in-depth study of the quantum skew divergence, including its relation to other state distinguishability measures. Finally, we present a number of important applications: new continuity inequalities for the quantum Jensen-Shannon divergence and the Holevo information, and a new and short proof of Bravyi's Small Incremental Mixing conjecture.

  14. Statistical physics inspired energy-efficient coded-modulation for optical communications.

    Science.gov (United States)

    Djordjevic, Ivan B; Xu, Lei; Wang, Ting

    2012-04-15

    Because Shannon's entropy can be obtained by Stirling's approximation of thermodynamics entropy, the statistical physics energy minimization methods are directly applicable to the signal constellation design. We demonstrate that statistical physics inspired energy-efficient (EE) signal constellation designs, in combination with large-girth low-density parity-check (LDPC) codes, significantly outperform conventional LDPC-coded polarization-division multiplexed quadrature amplitude modulation schemes. We also describe an EE signal constellation design algorithm. Finally, we propose the discrete-time implementation of D-dimensional transceiver and corresponding EE polarization-division multiplexed system. © 2012 Optical Society of America

  15. Introduction of High Throughput Magnetic Resonance T2-Weighted Image Texture Analysis for WHO Grade 2 and 3 Gliomas.

    Directory of Open Access Journals (Sweden)

    Manabu Kinoshita

    Full Text Available Reports have suggested that tumor textures presented on T2-weighted images correlate with the genetic status of glioma. Therefore, development of an image analyzing framework that is capable of objective and high throughput image texture analysis for large scale image data collection is needed. The current study aimed to address the development of such a framework by introducing two novel parameters for image textures on T2-weighted images, i.e., Shannon entropy and Prewitt filtering. Twenty-two WHO grade 2 and 28 grade 3 glioma patients were collected whose pre-surgical MRI and IDH1 mutation status were available. Heterogeneous lesions showed statistically higher Shannon entropy than homogenous lesions (p = 0.006 and ROC curve analysis proved that Shannon entropy on T2WI was a reliable indicator for discrimination of homogenous and heterogeneous lesions (p = 0.015, AUC = 0.73. Lesions with well-defined borders exhibited statistically higher Edge mean and Edge median values using Prewitt filtering than those with vague lesion borders (p = 0.0003 and p = 0.0005 respectively. ROC curve analysis also proved that both Edge mean and median values were promising indicators for discrimination of lesions with vague and well defined borders and both Edge mean and median values performed in a comparable manner (p = 0.0002, AUC = 0.81 and p < 0.0001, AUC = 0.83, respectively. Finally, IDH1 wild type gliomas showed statistically lower Shannon entropy on T2WI than IDH1 mutated gliomas (p = 0.007 but no difference was observed between IDH1 wild type and mutated gliomas in Edge median values using Prewitt filtering. The current study introduced two image metrics that reflect lesion texture described on T2WI. These two metrics were validated by readings of a neuro-radiologist who was blinded to the results. This observation will facilitate further use of this technique in future large scale image analysis of glioma.

  16. The quantum phase-transitions of water

    Science.gov (United States)

    Fillaux, François

    2017-08-01

    It is shown that hexagonal ices and steam are macroscopically quantum condensates, with continuous spacetime-translation symmetry, whereas liquid water is a quantum fluid with broken time-translation symmetry. Fusion and vaporization are quantum phase-transitions. The heat capacities, the latent heats, the phase-transition temperatures, the critical temperature, the molar volume expansion of ice relative to water, as well as neutron scattering data and dielectric measurements are explained. The phase-transition mechanisms along with the key role of quantum interferences and that of Hartley-Shannon's entropy are enlightened. The notions of chemical bond and force-field are questioned.

  17. Nota sobre culicídeos adultos coletados na região sul do Brasil

    Directory of Open Access Journals (Sweden)

    Barbosa Orlando Carlos

    1993-01-01

    Full Text Available São apresentados os resultados obtidos de coletas de mosquitos, com armadilha luminosa de Shannon, às margens de uma mata modificada, e armadilhas de Falcão na mesma mata e em ecótopos extra-florestais, no Município de Terra Boa, Estado do Paraná, Brasil, de setembro de 1988 a abril de 1990. Verificou-se a prevalência das espécies de culicídeos e compararam-se os dois métodos de coletas.

  18. Clay-to-carbon ratio controls the effect of herbicide application on soil bacterial richness and diversity in a loamy field

    DEFF Research Database (Denmark)

    Herath, H M Lasantha I; Møldrup, Per; de Jonge, Lis Wollesen

    2017-01-01

    Soil texture and soil organic carbon (OC) influence the bacterial microenvironment and also control herbicide sorption. A field-scale exploratory study was conducted to investigate the potential interaction between soil texture parameters, herbicides, and soil bacterial richness and diversity......-based coverage (ACE), Shannon diversity index, and phylogenetic diversity. In general, bacterial richness and diversity increased after bentazon application and decreased after glyphosate application. There was no significant effect for field locations with Dexter n (the ratio between clay and OC) values below 4...

  19. Chain rules for smooth min-and max-entropies

    DEFF Research Database (Denmark)

    Vitanov, Alexande; Dupont-Dupuis, Fréderic; Tomamichel, Marco

    2013-01-01

    The chain rule for the Shannon and von Neumann en- tropy, which relates the total entropy of a system to the entropies of its parts, is of central importance to information theory. Here, we consider the chain rule for the more general smooth min- and max-entropies, used in one-shot in formation...... theory. For these en- tropy measures, the chain rule no longer holds as an equality. How- ever, the standard chain rule for the von Neum ann entropy is re- trieved asymptotically when evaluating the smooth entropies for many identical and independently distributed states....

  20. Enhancing Optical Communications with Brand New Fibers

    DEFF Research Database (Denmark)

    Morioka, Toshio; Awaji, Yoshinari; Ryf, Roland

    2012-01-01

    Optical fibers have often been considered to offer effectively infinite capacity to support the rapid traffic growth essential to our information society. However, as demand has grown and technology has developed, we have begun to realize that there is a fundamental limit to fiber capacity of ~ 100...... Tb/s per fiber for systems based on conventional single-core single-mode optical fiber as the transmission medium. This limit arises from the interplay of a number of factors including the Shannon limit, optical fiber nonlinearities, the fiber fuse effect, as well as optical amplifier bandwidth...... new fibers for space-division multiplexing and mode-division multiplexing....

  1. MIMO capacity for deterministic channel models: sublinear growth

    DEFF Research Database (Denmark)

    Bentosela, Francois; Cornean, Horia; Marchetti, Nicola

    2013-01-01

    . In the current paper, we apply those results in order to study the (Shannon-Foschini) capacity behavior of a MIMO system as a function of the deterministic spread function of the environment and the number of transmitting and receiving antennas. The antennas are assumed to fill in a given fixed volume. Under...... some generic assumptions, we prove that the capacity grows much more slowly than linearly with the number of antennas. These results reinforce previous heuristic results obtained from statistical models of the transfer matrix, which also predict a sublinear behavior....

  2. 32 bit digital optical computer - A hardware update

    Science.gov (United States)

    Guilfoyle, Peter S.; Carter, James A., III; Stone, Richard V.; Pape, Dennis R.

    1990-01-01

    Such state-of-the-art devices as multielement linear laser diode arrays, multichannel acoustooptic modulators, optical relays, and avalanche photodiode arrays, are presently applied to the implementation of a 32-bit supercomputer's general-purpose optical central processing architecture. Shannon's theorem, Morozov's control operator method (in conjunction with combinatorial arithmetic), and DeMorgan's law have been used to design an architecture whose 100 MHz clock renders it fully competitive with emerging planar-semiconductor technology. Attention is given to the architecture's multichannel Bragg cells, thermal design and RF crosstalk considerations, and the first and second anamorphic relay legs.

  3. Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation

    DEFF Research Database (Denmark)

    Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz

    2018-01-01

    on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs...... ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria....

  4. Algorithmic Foundation of Spectral Rarefaction for Measuring Satellite Imagery Heterogeneity at Multiple Spatial Scales

    Science.gov (United States)

    Rocchini, Duccio

    2009-01-01

    Measuring heterogeneity in satellite imagery is an important task to deal with. Most measures of spectral diversity have been based on Shannon Information theory. However, this approach does not inherently address different scales, ranging from local (hereafter referred to alpha diversity) to global scales (gamma diversity). The aim of this paper is to propose a method for measuring spectral heterogeneity at multiple scales based on rarefaction curves. An algorithmic solution of rarefaction applied to image pixel values (Digital Numbers, DNs) is provided and discussed. PMID:22389600

  5. Pollinator diversity (Hymenoptera and Diptera in semi-natural habitats in Serbia during summer

    Directory of Open Access Journals (Sweden)

    Mudri-Stojnić Sonja

    2012-01-01

    Full Text Available The aim of this study was to assess species diversity and population abundance of the two main orders of pollinating insects, Hymenoptera and Diptera. The survey was conducted in 16 grassland fragments within agro-ecosystems in Vojvodina, as well as in surrounding fields with mass-flowering crops. Pollinators were identified and the Shannon-Wiener Diversity Index was used to measure their diversity. Five families, 7 subfamilies, 26 genera and 63 species of insects were recorded. All four big pollinator groups investigated were recorded; hoverflies were the most abundant with 32% of the total number of individuals, followed by wild bees - 29%, honeybees - 23% and bumblebees with 16%.

  6. Information measures of a deformed harmonic oscillator in a static electric field

    Science.gov (United States)

    Nascimento, J. P. G.; Ferreira, F. A. P.; Aguiar, V.; Guedes, I.; Costa Filho, Raimundo N.

    2018-06-01

    The Shannon entropy and the Fischer information are calculated for an harmonic oscillator in the presence of an applied electric field (ε) in a space with metrics given by gxx-1/2 = 1 + γx. For that metric the harmonic oscillator can be mapped into a Morse potential in an Euclidean space. For ε = 0, the ground state energy decreases when γ increases. However, for certain values of ε the energy decrease can be canceled out. The dependence of the uncertainties, the entropy, and the information on the parameters γ and ε are shown.

  7. Entropy lower bounds of quantum decision tree complexity

    OpenAIRE

    Shi, Yaoyun

    2000-01-01

    We prove a general lower bound of quantum decision tree complexity in terms of some entropy notion. We regard the computation as a communication process in which the oracle and the computer exchange several rounds of messages, each round consisting of O(log(n)) bits. Let E(f) be the Shannon entropy of the random variable f(X), where X is uniformly random in f's domain. Our main result is that it takes \\Omega(E(f)) queries to compute any \\emph{total} function f. It is interesting to contrast t...

  8. Introduction to coding and information theory

    CERN Document Server

    Roman, Steven

    1997-01-01

    This book is intended to introduce coding theory and information theory to undergraduate students of mathematics and computer science. It begins with a review of probablity theory as applied to finite sample spaces and a general introduction to the nature and types of codes. The two subsequent chapters discuss information theory: efficiency of codes, the entropy of information sources, and Shannon's Noiseless Coding Theorem. The remaining three chapters deal with coding theory: communication channels, decoding in the presence of errors, the general theory of linear codes, and such specific codes as Hamming codes, the simplex codes, and many others.

  9. Comparison of bioindicator eukaryotes of activated sludge biocenoses on two water-treatment plants: a case study

    Directory of Open Access Journals (Sweden)

    Achmadulina Farida Y.

    2017-06-01

    Full Text Available Activated sludge biocenoses were compared on waste-water treatment plants in the city of Kazan, Russian Federation and the city of Teplice, Czech Republic. Based on Palia-Kovnatski index, Acanthamoeba in Kazan, Epistylis in Teplice, and Acanthamoeba and Centropyxis were dominant genera in both plants. The major subdominant generas identified were Arcella, Opercularia and Aspidisca. This indicates high nitrification ability, high water purification potential and matured activated sludge. Chemical composition of the waste-water was identified as the main factor determining the sludge biocenoses diversity. Higher sludge biodiversity (Shannon, Margalef, and Sorensen indexes was found in Kazan corresponding to more concentrated inflow water.

  10. Compressive Sensing for Spread Spectrum Receivers

    DEFF Research Database (Denmark)

    Fyhn, Karsten; Jensen, Tobias Lindstrøm; Larsen, Torben

    2013-01-01

    With the advent of ubiquitous computing there are two design parameters of wireless communication devices that become very important: power efficiency and production cost. Compressive sensing enables the receiver in such devices to sample below the Shannon-Nyquist sampling rate, which may lead...... the bit error rate performance is degraded by the subsampling in the CS-enabled receivers, this may be remedied by including quantization in the receiver model.We also study the computational complexity of the proposed receiver design under different sparsity and measurement ratios. Our work shows...

  11. Changes in the enchytraeid fauna of a moder soil beech stand after liming. Veraenderungen der Enchytraeidenfauna in einem Sauerhumus-Buchenwald nach Bestandeskalkung

    Energy Technology Data Exchange (ETDEWEB)

    Schoch-Boesken, J. (Duesseldorf Univ. (Germany). 2. Zoologisches Inst.); Greven, H. (Duesseldorf Univ. (Germany). 2. Zoologisches Inst.)

    1989-01-01

    A survey of the enchytraeid fauna before and two years after liming of a beech forest and comparison with an untreated area (Luzulo-Fagetum) reveal changes in the number of individuals/m[sup 2], number of species. Shannon-Weaver-Index and Evenness, particularly when individual soil horizons are considered. These changes obviously are related to the elevated pH of the soil after liming. pH-preferences of enchytraeids, whose dominances are strongly affected by liming, are shown. (orig.)

  12. Diversidad de especies vegetales en fincas de la agricultura suburbana en Santiago de Cuba

    Directory of Open Access Journals (Sweden)

    Belyani Vargas Batis

    2016-04-01

    Full Text Available Resumen La investigación tuvo lugar con el objetivo evaluar el comportamiento de la diversidad de especies arvenses y arbóreas y arbustivas en cuatro fincas de la agricultura suburbana de Santiago de Cuba. Se delimitaron parcelas de 100 m2 para el conteo de las especies presentes en el área. Identificadas las especies se elaboró un listado florístico y se calcularon los indicadores de diversidad Alfa Riqueza de especies (S, Dominancia (Simpson D y Diversidad general (Shannon H´. En el caso de la diversidad Beta se tuvieron en cuenta los índices de Jaccard (Ij, Morisita-Horn (IM-H y Subordinación Ecológica (SE. Se registraron62 509 individuos pertenecientes a 65 familias, 154 géneros y 183 especies. Para ambos grupos de especies los indicadores de diversidad Alfa mostraron una tendencia al aumento de un período al otro con valores dentro del rango establecido para cada indicador, excepto para la finca La Caballería donde el índice de Shannon H´ no estuvo dentro del establecido para una correcta diversidad y abundancia en la época poco lluviosa. Los indicadores de la diversidad Beta arrojaron disimilitud entre las muestras que se comparan lo que evidencia la presencia de especies específicas adaptadas a las condiciones ambientales del lugar. Plant diversity on farm of sub urban agriculture in Santiago de Cuba. ABSTRACT The research was carried out to evaluate the performance of the diversity of weeds and tree and shrub species in four farms of suburban agriculture Santiago de Cuba. Plots of 100 m2 were sampled for counting the species. Identified plant species list was developed and diversity indicators were calculated alfa (α species richness (S, Dominance (Simpson D and General Diversity (Shannon H'. In the case of the beta (β diversity indices Jaccard (Ij, Morisita-Horn (IM-H and Subordination Environment (SE were taken into account. 62 509 individuals belonging to 65 families, 154 genera and 183 species were recorded. For

  13. Size Matters: How Big Should a Military Design Team Be?

    Science.gov (United States)

    2010-05-21

    the other members in a group or team. Jeff Bezos , the CEO of Amazon, recommends his “two-pizza” rule, which provides further support for the...Social Psychology 90, no. 4 (2006): 644. Shannon and Weaver works similar 77 Jeff Atwood, “The Magical Number Seven Plus or Minus Two,” Coding...applicability of Miller’s cognitive limitation of five to nine items for interpersonal interactions. Bezos ’ rule states that if a team cannot be fed with

  14. Avaliação da variabilidade das gerações G0 e F1 da linhagem GIFT de tilápia do Nilo (Oreochromis niloticus por RAPD = Variability evaluation of G0 and F1 generations of GIFT Nile tilapia strain (Oreochromis niloticus by RAPD

    Directory of Open Access Journals (Sweden)

    Enio Lupchinski Júnior

    2008-04-01

    Full Text Available Este trabalho teve como objetivo analisar, pela técnica RAPD, a variabilidade e a divergência genética de duas gerações da linhagem GIFT. Foram estimados parâmetros para os reprodutores (G0 e para a progênie (F1. A variabilidade genética foi determinada pelaporcentagem de loci polimórficos e pelo índice de Shannon. As gerações apresentaram 69,6% de loci polimórficos (G0 e 60,0% de polimorfismo (F1. Os valores para o índice de Shannon foram de 0,367 para a geração G0 e de 0,317 para a F1. Os valores de divergênciagenética, calculados pelo teste de Mantel, foram de 0,213 para a G0 e 0,208 para a geração F1. Os resultados obtidos indicaram que houve perda da variabilidade genética da geração G0 para a F1. No entanto, um fato a ser destacado foi a alta variabilidade genética para asgerações G0 e F1, característica fundamental para que ocorra ganho por melhoramento genético. O conjunto de dados indicou, ainda, que o status genético é favorável para a continuidade do programa de melhoramento genético para a linhagem GIFT, no Estado do Paraná.This study had as objective to analyze, by RAPD technique, the genetic variability and divergence of two GIFT Nile tilapia straingenerations. Parameters were estimated for breeders (G0 and offspring (F1. The genetic variability was determined by the polymorphic loci percentage and Shannon index. The polymorphic loci percentages were 69.6% (G0 and 60.0% (F1. The Shannon index valueswere 0.367 for the G0 generation and 0.317 for F1. Genetic divergence values, calculated using the Mantel test, were 0.213 for G0 and 0.208 for the F1 generation. The results indicated that there was a genetic variability loss from the G0 to F1 generation. However, it is important to observe the high genetic variability found for both the G0 and F1 generations, which is a fundamental characteristic in order to obtain gains in breeding programs. The data also indicated that the genetic status is favorable

  15. HPV Vaccine (A Cup of Health with CDC)

    Centers for Disease Control (CDC) Podcasts

    2013-07-25

    Nearly all sexually active men and women will get infected with the human papillomavirus, or HPV, at some point in their lives. HPV can lead to serious health problems later in life, including certain cancers in both men and women. Since 2006, a vaccine has been available that protects against the most frequent cancer-causing types of HPV. In this podcast, Shannon Stokley discusses the importance of getting the HPV vaccine.  Created: 7/25/2013 by MMWR.   Date Released: 7/25/2013.

  16. Research in the Optical Sciences

    Science.gov (United States)

    1990-03-12

    Services Optics Program DTIC ELECTE .S FEB 2 419921 Robert R. Shannon, Director Optical Sciences Center University of Arizona Tucson, Arizona 85721...Kearney. A.R. Lampis. Z. Milanovic. D.W. Schulze, J.R. Roberts , J. Kerner. E.B. Saloman. and C.M. Falco. "Multilayer mirrors for 182 A." X-Ray/EUV...Boyd. M. 0. Raymer . P. Narum, and D. J. Harter. Phys. Rev. A 24. 411 (1981). 11. G. Khitrova. Ph.D. dissertation. New York University, 1986

  17. Species Diversity Enhances Predator Growth Rates

    International Nuclear Information System (INIS)

    Olson, M.H.; Jacobs, R.P.; O'Donnell, E.B.

    2007-01-01

    Predators can be important top-down regulators of community structure and are known to have both positive and negative effects on species diversity. However, little is known about the reciprocal effects of species diversity on predators. Across a set of 80 lakes in Connecticut, USA, we found a strong positive correlation between prey species diversity (using the Shannon-Weiner Diversity Index) and growth rates of largemouth bass (Micropterus salmoides). This correlation was strongest for small predators and decreased with body size. Although the underlying mechanisms are not known, the correlation is not driven by total fish abundance, predator abundance, or productivity.

  18. Keldysh formalism for multiple parallel worlds

    Energy Technology Data Exchange (ETDEWEB)

    Ansari, M.; Nazarov, Y. V., E-mail: y.v.nazarov@tudelft.nl [Delft University of Technology, Kavli Institute of Nanoscience (Netherlands)

    2016-03-15

    We present a compact and self-contained review of the recently developed Keldysh formalism for multiple parallel worlds. The formalism has been applied to consistent quantum evaluation of the flows of informational quantities, in particular, to the evaluation of Renyi and Shannon entropy flows. We start with the formulation of the standard and extended Keldysh techniques in a single world in a form convenient for our presentation. We explain the use of Keldysh contours encompassing multiple parallel worlds. In the end, we briefly summarize the concrete results obtained with the method.

  19. The Phlebotominae sand fly (Diptera: Psychodidae fauna of two Atlantic Rain Forest Reserves in the State of Rio de Janeiro, Brazil

    Directory of Open Access Journals (Sweden)

    Souza Nataly A

    2001-01-01

    Full Text Available During two consecutive years, studies on the sand fly fauna in Poço das Antas and Fazenda Bom Retiro, two Atlantic Rain Forest Reserves from the State of Rio de Janeiro, were performed using Shannon traps, CDC light traps and human bait collections. Eleven species were identified; Lutzomyia longipalpis, L. migonei, L. edwardsi, L. intermedia, L. whitmani, L. fischeri, L. shannoni, L. ayrozai, L. hirsuta, L. monticola and L. misionensis (first occurrence in the State of Rio de Janeiro. L. intermedia and L. whitmani were the predominant anthropophilic species around houses, while L. hirsuta predominated in the forest.

  20. Diversity and seasonal variation of endophytic fungi isolated from three conifers in mt. Taehwa, Korea.

    Science.gov (United States)

    Kim, Chang-Kyun; Eo, Ju-Kyeong; Eom, Ahn-Heum

    2013-06-01

    The needled leaves of three conifer species were collected in Mt. Taehwa during different seasons of the year. Total 59 isolates and 19 species of endophytic fungi were isolated from the leaves and identified using morphological and molecular characteristics. As a result, Shannon index was different in its host plant; Larix kaempferi had a highest value of species diversity. According to the sampling season, 9 species of 19 species were isolated during fall season. The results suggest that the existing of host plant and sampling season are major factors of distribution of endophytic fungi.

  1. Unifying three perspectives on information processing in stochastic thermodynamics.

    Science.gov (United States)

    Barato, A C; Seifert, U

    2014-03-07

    So far, feedback-driven systems have been discussed using (i) measurement and control, (ii) a tape interacting with a system, or (iii) by identifying an implicit Maxwell demon in steady-state transport. We derive the corresponding second laws from one master fluctuation theorem and discuss their relationship. In particular, we show that both the entropy production involving mutual information between system and controller and the one involving a Shannon entropy difference of an information reservoir like a tape carry an extra term different from the usual current times affinity. We, thus, generalize stochastic thermodynamics to the presence of an information reservoir.

  2. Documentary Realism, Sampling Theory and Peircean Semiotics: electronic audiovisual signs (analog or digital as indexes of reality

    Directory of Open Access Journals (Sweden)

    Hélio Godoy

    2007-07-01

    Full Text Available This paper addresses Documentary Realism, focusing on thephysical phenomena of transduction that take place in analog and digital audiovisual systems, herein analyzed in the light of the Sampling Theory, within the framework of Shannon and Weaver’s Information Theory. Transduction is a process by which one type of energy is transformed into another, or by which information is transcodified. Within the scope of Documentary Realism, it cannotbe claimed that electronic audiovisual signs, because of their technical digital features lead to a rupture with reality. Rather, the digital documentary, based on electronic digital cinematography, is still an index of reality.

  3. Tailored graph ensembles as proxies or null models for real networks II: results on directed graphs

    International Nuclear Information System (INIS)

    Roberts, E S; Coolen, A C C; Schlitt, T

    2011-01-01

    We generate new mathematical tools with which to quantify the macroscopic topological structure of large directed networks. This is achieved via a statistical mechanical analysis of constrained maximum entropy ensembles of directed random graphs with prescribed joint distributions for in- and out-degrees and prescribed degree-degree correlation functions. We calculate exact and explicit formulae for the leading orders in the system size of the Shannon entropies and complexities of these ensembles, and for information-theoretic distances. The results are applied to data on gene regulation networks.

  4. Variación temporal de especies de Lutzomyia (Diptera: Psychodidae) en el área urbana de Sincelejo (Colombia)

    OpenAIRE

    Lambraño Cruz, Luz Fernanda; Manjarrez Pinzón, Gustavo; Bejarano Martínez, Eduar Elías

    2012-01-01

    Objetivos: Determinar la diversidad y la variación temporal de especies de Lutzomyia en el área urbana de Sincelejo (Colombia). Materiales y métodos: Se seleccionaron siete barrios de Sincelejo, capital del departamento de Sucre. Durante un año se realizaron muestreos quincenales y mensuales con trampas de luz tipo CDC y Shannon respectivamente, las cuales fueron instaladas en ambientes peridomiciliarios. Se analizó la diversidad de especies, así como la relación de la abundancia con variable...

  5. BiEntropy for Python v. 1.0

    Energy Technology Data Exchange (ETDEWEB)

    2018-03-15

    This Python package provides high-performance implementations of the functions and examples presented in "BiEntropy - The Approximate Entropy of a Finite Binary String" by Grenville J. Croll, presented at ANPA 34 in 2013. https://arxiv.org/abs/1305.0954 According to the paper, BiEntropy is "a simple algorithm which computes the approximate entropy of a finite binary string of arbitrary length" using "a weighted average of the Shannon Entropies of the string and all but the last binary derivative of the string."

  6. Development of Spatial Scaling Technique of Forest Health Sample Point Information

    Science.gov (United States)

    Lee, J. H.; Ryu, J. E.; Chung, H. I.; Choi, Y. Y.; Jeon, S. W.; Kim, S. H.

    2018-04-01

    Forests provide many goods, Ecosystem services, and resources to humans such as recreation air purification and water protection functions. In rececnt years, there has been an increase in the factors that threaten the health of forests such as global warming due to climate change, environmental pollution, and the increase in interest in forests, and efforts are being made in various countries for forest management. Thus, existing forest ecosystem survey method is a monitoring method of sampling points, and it is difficult to utilize forests for forest management because Korea is surveying only a small part of the forest area occupying 63.7 % of the country (Ministry of Land Infrastructure and Transport Korea, 2016). Therefore, in order to manage large forests, a method of interpolating and spatializing data is needed. In this study, The 1st Korea Forest Health Management biodiversity Shannon;s index data (National Institute of Forests Science, 2015) were used for spatial interpolation. Two widely used methods of interpolation, Kriging method and IDW(Inverse Distance Weighted) method were used to interpolate the biodiversity index. Vegetation indices SAVI, NDVI, LAI and SR were used. As a result, Kriging method was the most accurate method.

  7. Microbial diversity and component variation in Xiaguan Tuo Tea during pile fermentation.

    Science.gov (United States)

    Li, Haizhou; Li, Min; Yang, Xinrui; Gui, Xin; Chen, Guofeng; Chu, Jiuyun; He, Xingwang; Wang, Weitao; Han, Feng; Li, Ping

    2018-01-01

    Xiaguan Tuo Tea is largely consumed by the Chinese, but there is little research into the microbial diversity and component changes during the fermentation of this tea. In this study, we first used fluorescence in situ hybridization (FISH), next-generation sequencing (NGS) and chemical analysis methods to determine the microbial abundance and diversity and the chemical composition during fermentation. The FISH results showed that the total number of microorganisms ranges from 2.3×102 to 4.0×108 cells per gram of sample during fermentation and is mainly dominated by fungi. In the early fermentation stages, molds are dominant (0.6×102~2.8×106 cells/g, 0~35 d). However, in the late stages of fermentation, yeasts are dominant (3.6×104~9.6×106 cells/g, 35~56 d). The bacteria have little effect during the fermentation of tea (102~103 cells/g, fermentation (Shannon-Weaver index: 1.195857), and lower diversity was observed on days 6 and 56 of fermentation (Shannon-Weaver index 0.860589 and 1.119106, respectively). During the microbial fermentation, compared to the unfermented tea, the tea polyphenol content decreased by 54%, and the caffeine content increased by 59%. Theanine and free amino acid contents were reduced during fermentation by 81.1 and 92.85%, respectively.

  8. A STUDY OF WAVELET ENTROPY MEASURE DEFINITION AND ITS APPLICATION FOR FAULT FEATURE PICK-UP AND CLASSIFICATION

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Shannon entropy in time domain is a measure of signal or system uncertainty. When based on spectrum entropy, Shannon entropy can be taken as a measure of signal or system complexity.Therefore, wavelet analysis based on wavelet entropy measure can signify the complexity of non-steady signal or system in both time and frequency domain. In this paper, in order to meet the requirements of post-analysis on abundant wavelet transform result data and the need of information mergence, the basic definition of wavelet entropy measure is proposed, corresponding algorithms of several wavelet entropies, such as wavelet average entropy, wavelet time-frequency entropy, wavelet distance entropy,etc. are put forward, and the physical meanings of these entropies are analyzed as well. The application principle of wavelet entropy measure in ElectroEncephaloGraphy (EEG) signal analysis, mechanical fault diagnosis, fault detection and classification in power system are analyzed. Finally, take the transmission line fault detection in power system for example, simulations in two different systems, a 10kV automatic blocking and continuous power transmission line and a 500kV Extra High Voltage (EHV) transmission line, are carried out, and the two methods, wavelet entropy and wavelet modulus maxima, are compared, the results show feasibility and application prospect of the six wavelet entropies.

  9. FLORÍSTICA E FITOSSOCIOLOGIA DE QUATRO REMANESCENTES VEGETACIONAIS EM ÁREAS DE SERRA NO CARIRI PARAIBANO

    Directory of Open Access Journals (Sweden)

    PEDRO THIAGO BARBOSA DE OLIVEIRA

    2009-01-01

    Full Text Available It was studied vegetal remainders into four mountain areas: Serra de Bodopitá (Area1, Serra de Bodocongó (Area 2, Serra do Monte (Area 3 and Serra do Canoió (Area 4 located in paraiban Cariri. The study aimed at determines the phytossociolical parameters and for this was used the program Mata Nativa 2. It was also calculated the indexes of Shannon, Pielou equability, diversity of species and families. From the 2972 sampled individuals, 633 belonged to Area 1, 602 to Area 2, 908 to Area 3 and 829 to Area 4. All of them were distributed in 54 species belonged to 25 botanic families. It was observed that the families Fabaceae and Euphorbiaceae had the largest number of species and individuals and after them Cactaceae, Anacardiaceae and Apocynaceae. The Shannon indexes values in Areas 1, 2, 3 and 4 were respectively 2.65; 2.93; 2.35 e 2.59 nats.esp.-1 . The founded densities were 3165 individuals.ha-1 in Area 1, 3010 individuals.ha-1 in Area 2, 4540 individuals.ha-1 in Area 3 and 4145 individuals.ha-1 in Area 4. The four areas had the same species with the most importance values being them: Caesalpinia pyramidalis, Aspidosperma pyrifolium, Bauhinia cheilantha, Piptadenia stipulacea.

  10. Generative complexity of Gray-Scott model

    Science.gov (United States)

    Adamatzky, Andrew

    2018-03-01

    In the Gray-Scott reaction-diffusion system one reactant is constantly fed in the system, another reactant is reproduced by consuming the supplied reactant and also converted to an inert product. The rate of feeding one reactant in the system and the rate of removing another reactant from the system determine configurations of concentration profiles: stripes, spots, waves. We calculate the generative complexity-a morphological complexity of concentration profiles grown from a point-wise perturbation of the medium-of the Gray-Scott system for a range of the feeding and removal rates. The morphological complexity is evaluated using Shannon entropy, Simpson diversity, approximation of Lempel-Ziv complexity, and expressivity (Shannon entropy divided by space-filling). We analyse behaviour of the systems with highest values of the generative morphological complexity and show that the Gray-Scott systems expressing highest levels of the complexity are composed of the wave-fragments (similar to wave-fragments in sub-excitable media) and travelling localisations (similar to quasi-dissipative solitons and gliders in Conway's Game of Life).

  11. EFFECT OF ”KOMBA-KOMBA” PRUNING COMPOST AND PLANTING TIME OF MUNGBEAN IN INTERCROPPING WITH MAIZE ON YIELD AND SOIL FAUNA

    Directory of Open Access Journals (Sweden)

    Laode Sabaruddin

    2014-02-01

    Full Text Available Soil fauna plays an important role in decomposition and nutrient mineralization. The objective of this research was to study the effect of "komba-komba" compost and planting time of mungbean intercropped with maize on yield and soil fauna. The research was conducted in research station of Agricultural Faculty, Haluoleo University. The experiment was laid out using split plot design with two factors ("komba-komba" compost and planting time of mungbean intercropped with maize. The result indicated that the highest net assimilation rate (NAR of mungbean 5.78 g per cm2 per week was obtained in the komba-komba compost 10 ton per ha with planting time of mungbean at 14 days after planting (DAP maize whereas NAR of maize 5.50 g per cm2 per week was obtained in the planting time of mungbean at 14 DAP maize. Coleoptera and Hymenoptera (Formicidae were dominant and Shannon's diversity index ranged between 0.32 and 1.28. LER values tended to increase with the addition of "komba-komba" compost in soil and time variation of planting mungbean intercropped with maize. The relation between Shannon's diversity and LER values was variable.

  12. Sequence complexity and work extraction

    International Nuclear Information System (INIS)

    Merhav, Neri

    2015-01-01

    We consider a simplified version of a solvable model by Mandal and Jarzynski, which constructively demonstrates the interplay between work extraction and the increase of the Shannon entropy of an information reservoir which is in contact with a physical system. We extend Mandal and Jarzynski’s main findings in several directions: first, we allow sequences of correlated bits rather than just independent bits. Secondly, at least for the case of binary information, we show that, in fact, the Shannon entropy is only one measure of complexity of the information that must increase in order for work to be extracted. The extracted work can also be upper bounded in terms of the increase in other quantities that measure complexity, like the predictability of future bits from past ones. Third, we provide an extension to the case of non-binary information (i.e. a larger alphabet), and finally, we extend the scope to the case where the incoming bits (before the interaction) form an individual sequence, rather than a random one. In this case, the entropy before the interaction can be replaced by the Lempel–Ziv (LZ) complexity of the incoming sequence, a fact that gives rise to an entropic meaning of the LZ complexity, not only in information theory, but also in physics. (paper)

  13. ECOLOGICAL STUDY IN TWO QUARRIED LIMESTONE KARST HILLS IN BOGOR WEST JAVA: VEGETATION STRUCTURE AND FLORISTIC COMPOSITION

    Directory of Open Access Journals (Sweden)

    ANNISA SATYANTI

    2010-10-01

    Full Text Available Many species extinctions have probably gone unnoticed on limestone that was destroyed before they could be sampled. Unless biodiversity surveys are intensified, the true magnitude of extinctions will never be ascertained. The objectives of this study were to determine tree species composition of limestone hills in Nyungcung and Ciampea; to determine quantitatively the dominant and less dominant species and to quantify floristic structure of the two limestone hills. Value of richness (Menhinick and evenness in Nyungcung were 3.28 and 0.826 whilst in Ciampea were 3.29 and 0.823, respectively. In term of diversity (Shannon Wiener, Nyungcung seems to be more diverse than Ciampea as indicated by the higher value of diversity index. Nyungcung has 3.225 of diversity (Shannon Wiener index while Ciampea has 2.859. The floristic composition of two sites was significantly different and mostly comprised Moraceae, Rubiaceae, and Euphorbiaceae. However, the highest presence of species were Antidesma montanum (Euphorbiaceae and Chrysophyllum lanceolatum (Sapotaceae, and Pandanus sp. (Pandanaceae in Nyungcung, whereas in Ciampea, Harpullia arborea (Sapindaceae, Ophiorhhiza canescens (Rubiaceae, and Allophyllus cobbe (Sapindaceae. Macaranga rhizinoides, O. canescens, A. montanum, and Turpinia montana , respectively , gained the highest importance values.

  14. Monitoring of Damage in Sunflower and Maize Parcels Using Radar and Optical Time Series Data

    Directory of Open Access Journals (Sweden)

    György Surek

    2015-01-01

    Full Text Available The objective of this paper is to monitor the temporal behaviour of geometrical structural change of cropland affected by four different types of damage: weed infection, Western Corn Rootworm (WCR, storm damage, and drought by time series of different type of optical and quad-pol RADARSAT2 data. Based on our results it is established that ragweed infection in sunflower can be well identified by evaluation of radar (mid-June and optical (mid-August satellite images. Effect of drought in sunflower is well recognizable by spectral indices derived from optical as well as “I”-component of Shannon entropy (SEI from radar satellite images acquired during the first decade of July. Evaluation of radar and optical satellite images acquired between the last decade of July and mid-August proven to be the most efficient for detecting damages in maize fields caused by either by WCR or storm. Components of Shannon entropy are proven to have significant role in identification. Our project demonstrates the potential in integrated usage of polarimetric radar and optical satellite images for monitoring several types of agricultural damage.

  15. Changes in Landscape Pattern of Wetland around Hangzhou Bay

    Science.gov (United States)

    Lin, Wenpeng; Li, Yuan; Xu, Dan; Zeng, Ying

    2018-04-01

    Hangzhou Bay is an important estuarial coastal wetland, which offers a large number of land and ecological resources. It plays a significant role in the sustainable development of resources, environment and economy. In this paper, based on the remote sensing images in 1996, 2005 and 2013, we extracted the coastal wetland data and analyzed the wetland landscape pattern of the Hangzhou Bay in the past 20 years. The results show that: (1) the area of coastal wetland is heading downwards in the recent decades. Paddy field and the coastal wetland diminish greatly. (2) the single dynamic degree of wetland of the Hangzhou Bay displays that paddy fields and coastal wetlands are shrinking, but lakes, reservoirs and ponds are constantly expanding. (3) the wetland landscape pattern index shows that total patch area of the coastal wetland and paddy fields have gradually diminished. The Shannon diversity index, the Shannon evenness index as well as the landscape separation index of the coastal wetlands in the Hangzhou Bay increase steadily. The landscape pattern in the study area has shown a trend of high fragmentation, dominance decreases, but some dominant landscape still exist in this region. (4) Urbanization and natural factors lead to the reduction of wetland area. Besides the pressure of population is a major threat to the wetland. The study will provide scientific basis for long-term planning for this region.

  16. Information-theoretic lengths of Jacobi polynomials

    Energy Technology Data Exchange (ETDEWEB)

    Guerrero, A; Dehesa, J S [Departamento de Fisica Atomica, Molecular y Nuclear, Universidad de Granada, Granada (Spain); Sanchez-Moreno, P, E-mail: agmartinez@ugr.e, E-mail: pablos@ugr.e, E-mail: dehesa@ugr.e [Instituto ' Carlos I' de Fisica Teorica y Computacional, Universidad de Granada, Granada (Spain)

    2010-07-30

    The information-theoretic lengths of the Jacobi polynomials P{sup ({alpha}, {beta})}{sub n}(x), which are information-theoretic measures (Renyi, Shannon and Fisher) of their associated Rakhmanov probability density, are investigated. They quantify the spreading of the polynomials along the orthogonality interval [- 1, 1] in a complementary but different way as the root-mean-square or standard deviation because, contrary to this measure, they do not refer to any specific point of the interval. The explicit expressions of the Fisher length are given. The Renyi lengths are found by the use of the combinatorial multivariable Bell polynomials in terms of the polynomial degree n and the parameters ({alpha}, {beta}). The Shannon length, which cannot be exactly calculated because of its logarithmic functional form, is bounded from below by using sharp upper bounds to general densities on [- 1, +1] given in terms of various expectation values; moreover, its asymptotics is also pointed out. Finally, several computational issues relative to these three quantities are carefully analyzed.

  17. The evaluation of different forest structural indices to predict the stand aboveground biomass of even-aged Scotch pine (Pinus sylvestris L.) forests in Kunduz, Northern Turkey.

    Science.gov (United States)

    Ercanli, İlker; Kahriman, Aydın

    2015-03-01

    We assessed the effect of stand structural diversity, including the Shannon, improved Shannon, Simpson, McIntosh, Margelef, and Berger-Parker indices, on stand aboveground biomass (AGB) and developed statistical prediction models for the stand AGB values, including stand structural diversity indices and some stand attributes. The AGB prediction model, including only stand attributes, accounted for 85 % of the total variance in AGB (R (2)) with an Akaike's information criterion (AIC) of 807.2407, Bayesian information criterion (BIC) of 809.5397, Schwarz Bayesian criterion (SBC) of 818.0426, and root mean square error (RMSE) of 38.529 Mg. After inclusion of the stand structural diversity into the model structure, considerable improvement was observed in statistical accuracy, including 97.5 % of the total variance in AGB, with an AIC of 614.1819, BIC of 617.1242, SBC of 633.0853, and RMSE of 15.8153 Mg. The predictive fitting results indicate that some indices describing the stand structural diversity can be employed as significant independent variables to predict the AGB production of the Scotch pine stand. Further, including the stand diversity indices in the AGB prediction model with the stand attributes provided important predictive contributions in estimating the total variance in AGB.

  18. A Comparison of Visual and Genetic Techniques for Identifying Japanese Marten Scats - Enabling Diet Examination in Relation to Seasonal Food Availability in a Sub-Alpine Area of Japan.

    Science.gov (United States)

    Hisano, Masumi; Hoshino, Lisa; Kamada, Shouko; Masuda, Ryuichi; Newman, Chris; Kaneko, Yayoi

    2017-04-01

    We compared the reliability of visual diagnostic criteria to DNA diagnostic techniques, including newly designed primers, to discriminate Japanese marten (Martes melampus) feces from those of other sympatric carnivore species. Visual criteria proved > 95% reliable for fresh, odoriferous scats in good condition. Based upon this verification, we then examined if and how Japanese marten diet differs among seasons at high elevation study site (1500-2026 m). We also considered how intra-specific competition with the Japanese red fox (Vulpes vulpes japonica) may shape marten feeding ecology. From 120 Japanese marten fecal samples, high elevation diet comprised (frequency of occurrence) 30.6-66.0% mammals, 41.0-72.2% insects and 10.6-46.2% fruits, subject to seasonal variation, with a Shannon-Weaver index value of 2.77. These findings contrast substantially to seasonal marten diet reported in adjacent lowland regions (700-900 m), particularly in terms of fruit consumption, showing the trophic adaptability of the Japanese marten. We also noted a substantial dietary overlap with the red fox (n = 26 scats) with a Shannon-Weaver index of 2.61, inferring little trophic niche mutual exclusion (trophic niche overlap: 0.95), although some specific seasonal prey selection differences were likely related to relative differences in body size between foxes and martens. This additional information on the feeding ecology of the Japanese marten enables a better assessment of the specific risks populations face in mountainous regions.

  19. Entropy-Based Experimental Design for Optimal Model Discrimination in the Geosciences

    Directory of Open Access Journals (Sweden)

    Wolfgang Nowak

    2016-11-01

    Full Text Available Choosing between competing models lies at the heart of scientific work, and is a frequent motivation for experimentation. Optimal experimental design (OD methods maximize the benefit of experiments towards a specified goal. We advance and demonstrate an OD approach to maximize the information gained towards model selection. We make use of so-called model choice indicators, which are random variables with an expected value equal to Bayesian model weights. Their uncertainty can be measured with Shannon entropy. Since the experimental data are still random variables in the planning phase of an experiment, we use mutual information (the expected reduction in Shannon entropy to quantify the information gained from a proposed experimental design. For implementation, we use the Preposterior Data Impact Assessor framework (PreDIA, because it is free of the lower-order approximations of mutual information often found in the geosciences. In comparison to other studies in statistics, our framework is not restricted to sequential design or to discrete-valued data, and it can handle measurement errors. As an application example, we optimize an experiment about the transport of contaminants in clay, featuring the problem of choosing between competing isotherms to describe sorption. We compare the results of optimizing towards maximum model discrimination with an alternative OD approach that minimizes the overall predictive uncertainty under model choice uncertainty.

  20. Bioassessment of Choghakhor Wetland using Benthic Macroinvertebrates

    Directory of Open Access Journals (Sweden)

    P. Fathi

    2016-05-01

    Full Text Available In present study, besides investigating benthic communities and their demographics in Choghakhor wetland, the water quality has been evaluated and classified. Then, 10 stations were selected and sampling of benthos was done every 45 days since April 2010 to March 2011, with 3 replications at each station. Samples were obtained by Ekman grab Sampler (surface 400 cm2. The collected samples were separated and fixed by formalin (4%. The Macroinvertebrates samples were identified and counted in laboratory. Generally 25 families of benthic macroinvertebrates belonging to 5 classes and 12 orders were identified. The results were calculated as community measures, including total richness, Shannon - Wiener diversity index and Hilsenhoff Biological index at family level. The results obtained from temporal and spatial changes of data (Statgeraphics software and water qualitative classification using Shannon diversity index conformed to biological Hilsenhoff index. And finally, water quality of wetland was assessed to be polluted in average to high level. According to this study findings, it seems that, these indicators could be used as useful tools for evaluating water supplies quality.

  1. Application of Entropy and Fractal Dimension Analyses to the Pattern Recognition of Contaminated Fish Responses in Aquaculture

    Directory of Open Access Journals (Sweden)

    Harkaitz Eguiraun

    2014-11-01

    Full Text Available The objective of the work was to develop a non-invasive methodology for image acquisition, processing and nonlinear trajectory analysis of the collective fish response to a stochastic event. Object detection and motion estimation were performed by an optical flow algorithm in order to detect moving fish and simultaneously eliminate background, noise and artifacts. The Entropy and the Fractal Dimension (FD of the trajectory followed by the centroids of the groups of fish were calculated using Shannon and permutation Entropy and the Katz, Higuchi and Katz-Castiglioni’s FD algorithms respectively. The methodology was tested on three case groups of European sea bass (Dicentrarchus labrax, two of which were similar (C1 control and C2 tagged fish and very different from the third (C3, tagged fish submerged in methylmercury contaminated water. The results indicate that Shannon entropy and Katz-Castiglioni were the most sensitive algorithms and proved to be promising tools for the non-invasive identification and quantification of differences in fish responses. In conclusion, we believe that this methodology has the potential to be embedded in online/real time architecture for contaminant monitoring programs in the aquaculture industry.

  2. Dispersal pattern of the sand fly Lutzomyia neivai (Diptera: Psychodidae in a cutaneous leishmaniasis endemic rural area in Southeastern Brazil

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    Cláudio Casanova

    2005-11-01

    Full Text Available The dispersal pattern of the sand fly Lutzomyia neivai was studied through mark-release-recapture experiments in an American cutaneous leishmaniasis endemic rural area in Southeastern Brazil. Over 6500 specimens were marked with fluorescent powder and released in forest edge and peridomicile habitats from August to November 1999, February and April 2000. Recapture attempts were made using Shannon and CDC traps up to eight successive nights after releases. A total of 493 (7.58% specimens were recaptured. The number of recaptured males and females of L. neivai in CDC traps was not affected by the distance between the trap and the release points. Approximately 90% of males and females recaptured in CDC traps were caught up to 70 m from the release points. The maximum female flight range recorded was 128 m. The average flight range per day was less than 60 m for males and females. Of the flies released in forest edge, approximately 16% of the recaptured females were caught in Shannon traps in the peridomicile habitat. The results indicate that the movements of L. neivai are spatially focal and the possibility of dispersion from forest to peridomicile habitat may be an important way of contracting leishmaniasis in dwellings.

  3. FLORISTIC AND STRUCTURAL CHARACTERIZATION OF GALLERY FOREST FRAGMENTS OF UPPER ARAGUAIA RIVER BASIN

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    Christian Dias Cabacinha

    2014-06-01

    Full Text Available http://dx.doi.org/10.5902/1980509814575The forests of upper Araguaia river basin are daily exposed to degradation agents due to intense agriculture practices. Twenty two fragments (of 10 until 169 ha were surveyed according to point-centered quarter method to characterize vegetation structure and to create a database to forest restoration. One hundred and nine (109 species, belonging to 78 genus and 42 families, were sampled where 73.4% revealed zoochorous dispersal pattern, and 69.7% were classified to initial sucessional category. Shannon index and Pielou equability index were 3.86 nats. ind-1 and 0.82, respectively. Density and total basal area estimated were 1,351 trees.ha-1 and 19.28 m2.ha-1. The areas showed lower richness, Shannon and Pielou heterogeneity indices, lower basal area, and high number of species of intermediate stage of ecological sucession and colonization of cerrado and cerradão species in disturbed areas, altering the original landscape. Such situation, added to the importance of those areas for the biodiversity conservation and ecological services (mainly relative to the water, demands protection actions and management that use the great regenerative potential of the area, given by the existence of a great number of initial secondary species and the prevalence of zoochoric species.

  4. CARACTERIZAÇÃO FLORÍSTICA E ESTRUTURAL DE FRAGMENTOS DE MATAS DE GALERIA DA BACIA DO ALTO ARAGUAIA

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    Christian Dias Cabacinha

    2014-01-01

    Full Text Available The forests of upper Araguaia river basin are daily exposed to degradation agents due to intense agriculture practices. Twenty two fragments (of 10 until 169 ha were surveyed according to point-centered quarter method to characterize vegetation structure and to create a database to forest restoration. One hundred and nine (109 species, belonging to 78 genus and 42 families, were sampled where 73.4% revealed zoochorous dispersal pattern, and 69.7% were classified to initial sucessional category. Shannon index and Pielou equability index were 3.86 nats. ind -1 and 0.82, respectively. Density and total basal area estimated were 1,351 trees.ha -1 and 19.28 m 2 .ha -1 . The areas showed lower richness, Shannon and Pielou heterogeneity indices, lower basal area, and high number of species of intermediate stage of ecological sucession and colonization of cerrado and cerradão species in disturbed areas, altering the original landscape. Such situation, added to the importance of those areas for the biodiversity conservation and ecological services (mainly relative to the water, demands protection actions and management that use the great regenerative potential of the area, given by the existence of a great number of initial secondary species and the prevalence of zoochoric species.

  5. Tree hole mosquito species composition and relative abundances differ between urban and adjacent forest habitats in northwestern Argentina.

    Science.gov (United States)

    Mangudo, C; Aparicio, J P; Rossi, G C; Gleiser, R M

    2018-04-01

    Water-holding tree holes are main larval habitats for many pathogen vectors, especially mosquitoes (Diptera: Culicidae). Along 3 years, the diversity and composition of mosquito species in tree holes of two neighbouring but completely different environments, a city and its adjacent forest, were compared using generalized linear mixed models, PERMANOVA, SIMPER and species association indexes. The city area (Northwest Argentina) is highly relevant epidemiologically due to the presence of Aedes aegypti L. (main dengue vector) and occurrence of dengue outbreaks; the Yungas rainforests are highly biologically diverse. In total seven mosquito species were recorded, in descending order of abundance: Ae. aegypti, Haemagogus spegazzinii Brèthes, Sabethes purpureus (Theobald), Toxorhynchites guadeloupensis Dyar and Knab, Aedes terrens Walker, Haemagogus leucocelaenus Dyar & Shannon and Sabethes petrocchiae (Shannon and Del Ponte). The seven mosquito species were recorded in both city sites and forested areas; however, their mosquito communities significantly diverged because of marked differences in the frequency and relative abundance of some species: Tx. guadeloupensis and Ae. aegypti were significantly more abundant in forest and urban areas, respectively. Positive significant associations were detected between Ae. aegypti, Hg. spegazzinii and Hg. leucocelaenus. The combined presence of Ae. aegypti, Haemagogus and Sabethes in the area also highlight a potential risk of yellow fever epidemics. Overall results show an impoverished tree hole mosquito fauna in urban environments, reflecting negative effects of urbanization on mosquito diversity.

  6. Aquatic macrophyte community varies in urban reservoirs with different degrees of eutrophication

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    Suelen Cristina Alves da Silva

    2014-06-01

    Full Text Available AIM: Investigate spatial and temporal variation in the aquatic macrophyte community in four urban reservoirs located in Curitiba metropolitan region, Brazil. We tested the hypothesis that aquatic macrophyte community differ among reservoirs with different degrees of eutrophication. METHODS: The reservoirs selected ranged from oligotrophic/mesotrophic to eutrophic. Sampling occurred in October 2011, January 2012 and June 2012. Twelve aquatic macrophytes stands were sampled at each reservoir. Species were identified and the relative abundance of aquatic macrophytes was estimated. Differences among reservoirs and over sampling periods were analyzed: i through two‑way ANOVAs considering the stand extent (m and the stand biodiversity - species richness, evenness, Shannon-Wiener index and beta diversity (species variation along the aquatic macrophyte stand; and ii through PERMANOVA considering species composition. Indicator species that were characteristic for each reservoir were also identified. RESULTS: The aquatic macrophyte stand extent varied among reservoirs and over sampling periods. Species richness showed only temporal variation. On the other hand, evenness and Shannon-Wiener index varied only among reservoirs. The beta diversity of macrophyte stands did not vary among reservoirs or over time, meaning that species variability among aquatic macrophyte stands was independent of the stand extent and reservoir eutrophication. Community composition depended on the reservoir and sampling period. CONCLUSIONS: Our results support our initial expectation that reservoirs of different degrees of eutrophication have different aquatic macrophyte communities. As a consequence, each reservoir had particular indicator species. Therefore, monitoring and management efforts must be offered for each reservoir individually.

  7. Deciphering Diversity Indices for a Better Understanding of Microbial Communities.

    Science.gov (United States)

    Kim, Bo-Ra; Shin, Jiwon; Guevarra, Robin; Lee, Jun Hyung; Kim, Doo Wan; Seol, Kuk-Hwan; Lee, Ju-Hoon; Kim, Hyeun Bum; Isaacson, Richard

    2017-12-28

    The past decades have been a golden era during which great tasks were accomplished in the field of microbiology, including food microbiology. In the past, culture-dependent methods have been the primary choice to investigate bacterial diversity. However, using cultureindependent high-throughput sequencing of 16S rRNA genes has greatly facilitated studies exploring the microbial compositions and dynamics associated with health and diseases. These culture-independent DNA-based studies generate large-scale data sets that describe the microbial composition of a certain niche. Consequently, understanding microbial diversity becomes of greater importance when investigating the composition, function, and dynamics of the microbiota associated with health and diseases. Even though there is no general agreement on which diversity index is the best to use, diversity indices have been used to compare the diversity among samples and between treatments with controls. Tools such as the Shannon- Weaver index and Simpson index can be used to describe population diversity in samples. The purpose of this review is to explain the principles of diversity indices, such as Shannon- Weaver and Simpson, to aid general microbiologists in better understanding bacterial communities. In this review, important questions concerning microbial diversity are addressed. Information from this review should facilitate evidence-based strategies to explore microbial communities.

  8. Inference with viral quasispecies diversity indices: clonal and NGS approaches.

    Science.gov (United States)

    Gregori, Josep; Salicrú, Miquel; Domingo, Esteban; Sanchez, Alex; Esteban, Juan I; Rodríguez-Frías, Francisco; Quer, Josep

    2014-04-15

    Given the inherent dynamics of a viral quasispecies, we are often interested in the comparison of diversity indices of sequential samples of a patient, or in the comparison of diversity indices of virus in groups of patients in a treated versus control design. It is then important to make sure that the diversity measures from each sample may be compared with no bias and within a consistent statistical framework. In the present report, we review some indices often used as measures for viral quasispecies complexity and provide means for statistical inference, applying procedures taken from the ecology field. In particular, we examine the Shannon entropy and the mutation frequency, and we discuss the appropriateness of different normalization methods of the Shannon entropy found in the literature. By taking amplicons ultra-deep pyrosequencing (UDPS) raw data as a surrogate of a real hepatitis C virus viral population, we study through in-silico sampling the statistical properties of these indices under two methods of viral quasispecies sampling, classical cloning followed by Sanger sequencing (CCSS) and next-generation sequencing (NGS) such as UDPS. We propose solutions specific to each of the two sampling methods-CCSS and NGS-to guarantee statistically conforming conclusions as free of bias as possible. josep.gregori@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  9. Assessment of plant species diversity based on hyperspectral indices at a fine scale.

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    Peng, Yu; Fan, Min; Song, Jingyi; Cui, Tiantian; Li, Rui

    2018-03-19

    Fast and nondestructive approaches of measuring plant species diversity have been a subject of excessive scientific curiosity and disquiet to environmentalists and field ecologists worldwide. In this study, we measured the hyperspectral reflectances and plant species diversity indices at a fine scale (0.8 meter) in central Hunshandak Sandland of Inner Mongolia, China. The first-order derivative value (FD) at each waveband and 37 hyperspectral indices were used to assess plant species diversity. Results demonstrated that the stepwise linear regression of FD can accurately estimate the Simpson (R 2  = 0.83), Pielou (R 2  = 0.87) and Shannon-Wiener index (R 2  = 0.88). Stepwise linear regression of FD (R 2  = 0.81, R 2  = 0.82) and spectral vegetation indices (R 2  = 0.51, R 2  = 0.58) significantly predicted the Margalef and Gleason index. It was proposed that the Simpson, Pielou and Shannon-Wiener indices, which are widely used as plant species diversity indicators, can be precisely estimated through hyperspectral indices at a fine scale. This research promotes the development of methods for assessment of plant diversity using hyperspectral data.

  10. Comparative study on composition and abundance of major planktons and physico-chemical characteristics among two ponds and Lake Tana, Ethiopia

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    Wondie Zelalem Amanu

    2015-11-01

    Full Text Available Objective: To evaluate the difference in physico-chemical characteristics, composition and abundance of plankton communities owing to the supplementary feed added in fish ponds as compared to Lake Tana. Methods: Physico-chemical and biological data of plankton were collected from 3 studied sites from November 2008 to October 2009. Data were compared using One-way ANOVA to see the difference among sites. Diversity indices such as Margalef's index, Shannon-Wiener index, and evenness index were employed to describe the distribution of plankton community among the studied sites. Results: The pH value was remarkably higher in ponds water. However, conductivity and total dissolved solids were the highest in lake water. Nitrate concentration was relatively high in ponds. Zooplankton species richness was higher in lake water than ponds. The lake also had the highest mean value of both Shannon-Wiener index and evenness index in phytoplankton. Conclusions: The results revealed that the supplementary feed added to each pond had influence on nutrient content which enhanced algal biomass and productivity of the ponds. However, the pond water has to be regularly refreshed to control eutrophication.

  11. Investigation on thermo-acoustic instability dynamic characteristics of hydrocarbon fuel flowing in scramjet cooling channel based on wavelet entropy method

    Science.gov (United States)

    Zan, Hao; Li, Haowei; Jiang, Yuguang; Wu, Meng; Zhou, Weixing; Bao, Wen

    2018-06-01

    As part of our efforts to find ways and means to further improve the regenerative cooling technology in scramjet, the experiments of thermo-acoustic instability dynamic characteristics of hydrocarbon fuel flowing have been conducted in horizontal circular tubes at different conditions. The experimental results indicate that there is a developing process from thermo-acoustic stability to instability. In order to have a deep understanding on the developing process of thermo-acoustic instability, the method of Multi-scale Shannon Wavelet Entropy (MSWE) based on Wavelet Transform Correlation Filter (WTCF) and Multi-Scale Shannon Entropy (MSE) is adopted in this paper. The results demonstrate that the developing process of thermo-acoustic instability from noise and weak signals is well detected by MSWE method and the differences among the stability, the developing process and the instability can be identified. These properties render the method particularly powerful for warning thermo-acoustic instability of hydrocarbon fuel flowing in scramjet cooling channels. The mass flow rate and the inlet pressure will make an influence on the developing process of the thermo-acoustic instability. The investigation on thermo-acoustic instability dynamic characteristics at supercritical pressure based on wavelet entropy method offers guidance on the control of scramjet fuel supply, which can secure stable fuel flowing in regenerative cooling system.

  12. Traces of self-organisation and long-range memory in variations of environmental radon in soil. Comparative results from monitoring in Lesvos Island and Ileia (Greece)

    International Nuclear Information System (INIS)

    Dimitrios Nikolopoulos; Yiannis Chaldeos; Panayiotis Yannakopoulos; Sofia Kottou; Constantinos Nomicos

    2014-01-01

    This paper addresses issues of self-affinity, long-memory and self-organisation in variations of radon in soil recorded in Lesvos Island, Greece. Several techniques were employed, namely (a) power-law wavelet spectral fractal analysis, (b) estimation of Hurst exponents through (b1) rescaled-range, (b2) roughness-length, (b3) variogram and (a), (c) detrended fluctuation analysis, (d) investigation of fractal dimensions and (e) analysis of five block entropies: (e1) Shannon entropy, (e2) Shannon entropy per letter, (e3) conditional entropy, (e4) Tsallis entropy, and (e5) normalised Tsallis entropy. Long-lasting antipersistency was identified during a period of anomalous radon variations following fractional Brownian modelling. Remaining variations did not exhibit analogous behaviour and followed fractional Gaussian modelling. Antipersistent power-law-beta-exponent-values between 1.5 and 2.0 were detected during anomalies. Persistent values were also found. Hurst exponents were mainly within 0 (n) ≤ 0.59, conditional entropy, between 0.01 ≤ h (n) ≤ 0.58, Tsallis entropy, between 0.55 ≤ S q ≤ 1.01 and normalised Tsallis entropy between, 0.98 ≤ S ≤ 5.42 (block-size n = 4). Entropies were lower during anomalies, indicating strong self-organisation. Persistency–antipersistency switching was observed, consistent with long-memory dynamics. Potential geological sources were discussed. The asperity-model was proposed. Findings were compared to results obtained under analogous methodologies in Ileia, Greece. (author)

  13. Multiwavelet packet entropy and its application in transmission line fault recognition and classification.

    Science.gov (United States)

    Liu, Zhigang; Han, Zhiwei; Zhang, Yang; Zhang, Qiaoge

    2014-11-01

    Multiwavelets possess better properties than traditional wavelets. Multiwavelet packet transformation has more high-frequency information. Spectral entropy can be applied as an analysis index to the complexity or uncertainty of a signal. This paper tries to define four multiwavelet packet entropies to extract the features of different transmission line faults, and uses a radial basis function (RBF) neural network to recognize and classify 10 fault types of power transmission lines. First, the preprocessing and postprocessing problems of multiwavelets are presented. Shannon entropy and Tsallis entropy are introduced, and their difference is discussed. Second, multiwavelet packet energy entropy, time entropy, Shannon singular entropy, and Tsallis singular entropy are defined as the feature extraction methods of transmission line fault signals. Third, the plan of transmission line fault recognition using multiwavelet packet entropies and an RBF neural network is proposed. Finally, the experimental results show that the plan with the four multiwavelet packet energy entropies defined in this paper achieves better performance in fault recognition. The performance with SA4 (symmetric antisymmetric) multiwavelet packet Tsallis singular entropy is the best among the combinations of different multiwavelet packets and the four multiwavelet packet entropies.

  14. How multiplicity determines entropy and the derivation of the maximum entropy principle for complex systems.

    Science.gov (United States)

    Hanel, Rudolf; Thurner, Stefan; Gell-Mann, Murray

    2014-05-13

    The maximum entropy principle (MEP) is a method for obtaining the most likely distribution functions of observables from statistical systems by maximizing entropy under constraints. The MEP has found hundreds of applications in ergodic and Markovian systems in statistical mechanics, information theory, and statistics. For several decades there has been an ongoing controversy over whether the notion of the maximum entropy principle can be extended in a meaningful way to nonextensive, nonergodic, and complex statistical systems and processes. In this paper we start by reviewing how Boltzmann-Gibbs-Shannon entropy is related to multiplicities of independent random processes. We then show how the relaxation of independence naturally leads to the most general entropies that are compatible with the first three Shannon-Khinchin axioms, the (c,d)-entropies. We demonstrate that the MEP is a perfectly consistent concept for nonergodic and complex statistical systems if their relative entropy can be factored into a generalized multiplicity and a constraint term. The problem of finding such a factorization reduces to finding an appropriate representation of relative entropy in a linear basis. In a particular example we show that path-dependent random processes with memory naturally require specific generalized entropies. The example is to our knowledge the first exact derivation of a generalized entropy from the microscopic properties of a path-dependent random process.

  15. BIOLOGICAL WATER QUALITY ASSESSMENT OF THE WHITECLAWED CRAYFISH HABITAT BASED ON MACROINVERTEBRATE COMMUNITIES: USEFULNESS FOR ITS CONSERVATION

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    GRANDJEAN F.

    2003-04-01

    Full Text Available A survey of the macroinvertebrates of three brooks harbouring the white-clawed crayfish was conducted in Haute-Vienne department (France. Its aim was to increase our understanding of these ecosystems to help the conservation of A. pallipes. These brooks run through pastoral areas with well-developed riparian vegetation, which offers an important shade. Water temperature, dissolved oxygen concentration, pH, and conductivity fell within the ranges found for this species. A total of 34, 31, 29 taxa and 1 502, 1 364, 2 707 individuals of macrobenthos were collected in Holme, Besque and Bellecombe streams, respectively. Results showed good to very good water quality with IBGN scores ranging from 15 (Bellecombe to 17 (Holme and Besque, reflecting a limited impact of the anthropogenic disturbances. Taxa diversity were high for Holme and Besque with Shannon index around 3.2, translating a great heterogeneity of habitat and an equilibrated faunal community. Bellecombe showed a limited diversity with Shannon index of 1.42, resulting from the presence of numberous Chironomidae. This brook suffers probably weak organic pollution which could be related to the low water flow observed during the sampling. The similarity test according to Jaccard index showed high percentage of common taxa among ETP (Ephemeroptera-Trichoptera-Plecoptera between all sites. The high similarity of benthic macroinvertebrate communities could be an useful criteria to identify brooks for restocking purpose.

  16. A Preliminary Study on Diverse Plant Uses of Rukai Tribe in Wutai District of Pingtung County, Southern Taiwan

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    Sheng-Zehn Yang

    2011-03-01

    Full Text Available The Rukai tribe is concentrated in the Wutai Township of Pingtung County, southern Taiwan. From 2000 to 2003 people of the Rukai in Wutai were interviewed on the traditional uses of plants and samples of such plant species were collected in an effort to remedy the situation of insufficient quantitative data on Taiwan’s ethnobotany. The number of citations per species and total number of citations were recorded in order to calculate diversity indices such as Shannon-Wiener index, evenness index, and rarefaction curves. Thirty-seven interviewed informants cited 245 plant species, which were then classified into thirteen types of usages, such as food, medicine, tools, and decoration. Among the 245 plant species, 93 species are used as food, 73 as tools, 52 for decoration and 45 for medicinal purposes. Informants described six types of usages for Hibiscus taiwanensis Hu and Vitex negundo L. Sambucus chinensis Nakai and Chamaesyce hirta (L. Millsp. had the highest number of citations for medicinal usages. The Shannon-Wiener index was 2.27. The evenness values was 0.95, showing that the Wutai Rukai people had a low dominance concerning the uses of a few species and an equitability of plant uses. The diversity indices and the Coleman rarefaction curves of the Taiwan Rukai tribe could be available to compare ethnobotanical data with different areas.

  17. Tsallis Entropy Theory for Modeling in Water Engineering: A Review

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    Vijay P. Singh

    2017-11-01

    Full Text Available Water engineering is an amalgam of engineering (e.g., hydraulics, hydrology, irrigation, ecosystems, environment, water resources and non-engineering (e.g., social, economic, political aspects that are needed for planning, designing and managing water systems. These aspects and the associated issues have been dealt with in the literature using different techniques that are based on different concepts and assumptions. A fundamental question that still remains is: Can we develop a unifying theory for addressing these? The second law of thermodynamics permits us to develop a theory that helps address these in a unified manner. This theory can be referred to as the entropy theory. The thermodynamic entropy theory is analogous to the Shannon entropy or the information theory. Perhaps, the most popular generalization of the Shannon entropy is the Tsallis entropy. The Tsallis entropy has been applied to a wide spectrum of problems in water engineering. This paper provides an overview of Tsallis entropy theory in water engineering. After some basic description of entropy and Tsallis entropy, a review of its applications in water engineering is presented, based on three types of problems: (1 problems requiring entropy maximization; (2 problems requiring coupling Tsallis entropy theory with another theory; and (3 problems involving physical relations.

  18. IMPACT OF JUTE RETTING ON NATIVE FISH DIVERSITY AND AQUATIC HEALTH OF ROADSIDE TRANSITORY WATER BODIES: AN ASSESSMENT IN EASTERN INDIA

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    Dipankar Ghosh

    2015-09-01

    Full Text Available Roadside transitory water bodies being manmade depressions have a great ecological and socio-economic importance from years. The effects of agricultural runoffs, jute retting, macro-phytes infestations and inadequate rainfall in changed climate often degrade transitory water bodies’ environment while the biodiversity have impacted severely because of population pressure, over exploitation and indiscriminate use of fine meshed fishing gears as a whole. Physico-chemical and biological analysis with fish species composition, relative abundance, diversity indices like species richness, evenness and Shannon-Wiener index were carried out for pre-, during and post-jute retting season and for year mean as a whole to assess impact of jute retting on the roadside transitory water body’s environmental health and indigenous fish diversity at Sahebnagar village in Nadia District, India. All the physico-chemical parameters barring biochemical oxygen demand and water transparency remained more or less same or marginally got little changed during those three seasons. As much as 19 native fish species with varied relative abundances and dominances were identified. Jute retting impacted lower native fish diversity indices like Shannon-Wiener index values (1.94 to 2.68 clearly indicated poor to moderate pollution status of the transitory water body in that area during monsoon in particular and throughout the year in general. So we opined there should be some control over the intense jute retting in the road side transitory water bodies for sustainable management of these manmade resources.

  19. Species Diversity of Oak Stands and Its Significance for Drought Resistance

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    Jan Kotlarz

    2018-03-01

    Full Text Available Drought periods have an adverse impact on the condition of oak stands. Research on different types of ecosystems has confirmed a correlation between plant species diversity and the adverse effects of droughts. The purpose of this study was to investigate the changes that occurred in an oak stand (Krotoszyn Plateau, Poland under the impact of the summer drought in 2015. We used a method based on remote sensing indices from satellite images in order to detect changes in the vegetation in 2014 and 2015. A positive difference was interpreted as an improvement, whereas a negative one was treated as a deterioration of the stand condition. The Shannon-Wiener species diversity was estimated using an iterative principal component analysis (PCA algorithm based on aerial images. We observed a relationship between the species indices of the individual forest divisions and their response to drought. The highest correlation between the index differences and the Shannon-Wiener indices was found for the Green Normalized Difference Vegetation Index (GNDVI index (+0.74. In addition, correlations were observed between the mean index difference and the percentage shares in the forest divisions of species such as Pinus sylvestris L. (P. sylvestris (+0.67 ± 0.08 and Quercus robur L. (Q. robur (−0.65 ± 0.10. Our results lead us to infer that forest management based on highly diverse habitats is more suitable to meet the challenges in the context of global climatic changes, characterized by increasingly frequent droughts.

  20. Optimal attacks on qubit-based Quantum Key Recycling

    Science.gov (United States)

    Leermakers, Daan; Škorić, Boris

    2018-03-01

    Quantum Key Recycling (QKR) is a quantum cryptographic primitive that allows one to reuse keys in an unconditionally secure way. By removing the need to repeatedly generate new keys, it improves communication efficiency. Škorić and de Vries recently proposed a QKR scheme based on 8-state encoding (four bases). It does not require quantum computers for encryption/decryption but only single-qubit operations. We provide a missing ingredient in the security analysis of this scheme in the case of noisy channels: accurate upper bounds on the required amount of privacy amplification. We determine optimal attacks against the message and against the key, for 8-state encoding as well as 4-state and 6-state conjugate coding. We provide results in terms of min-entropy loss as well as accessible (Shannon) information. We show that the Shannon entropy analysis for 8-state encoding reduces to the analysis of quantum key distribution, whereas 4-state and 6-state suffer from additional leaks that make them less effective. From the optimal attacks we compute the required amount of privacy amplification and hence the achievable communication rate (useful information per qubit) of qubit-based QKR. Overall, 8-state encoding yields the highest communication rates.

  1. ASSESSMENT OF GENETIC DIVERSITY OF REHMANNIA GLUTINOSA LIBOSCH BASED ON ISSR MARKERS

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    YANQING ZHOU, WUJUN GAO, HONGYING DUAN, FENGPING GU

    2007-08-01

    Full Text Available In order to assess the genetic diversity of Rehmannia glutinosa Libosch cultivars ( lines in Huai zone, Inter-simple sequence repeat (ISSR was performed. Ten appropriate ISSR primers were selected from a total of 44 ISSR ones for ISSR PCR amplification. The ten primers could amplify one hundred and ten bands. Based on them, A Jaccard’s genetic similarity matrix and a dendrogram for these ten cultivars were established using SPSS 10.0 software. In this dendrogram, they could be divided into two groups : Group1 contained six individuals such as Zupei 85.5, Datian 85.5, Zupei 9302, Jinbai, Jinzhuangyuan and Datian9302; Group2 consisted of four ones such as Beijing No.1, Dahongpao, Dihuang9104 and wild dihuang. Furthermore, Principal coordinate analysis (PCA supported the above cluster analysis; Shannon\\'s Information index (I is 0.3577, effective number of alleles (Ne is 1.4037, the percentage of polymorphic loci is 71.82 % by means of POPGENE32 software; A DNA fingerprint was developed with a single primer, ISSR6, in which each of ten individuals tested had its unique fingerprint pattern and was distinguished from each other. The results revealed that ISSR method is suitable for DNA fingerprinting, identification and genetic diversity analysis of Rehmannia glutinosa in Huai zone.

  2. VBioindex: A Visual Tool to Estimate Biodiversity

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    Dong Su Yu

    2015-09-01

    Full Text Available Biological diversity, also known as biodiversity, is an important criterion for measuring the value of an ecosystem. As biodiversity is closely related to human welfare and quality of life, many efforts to restore and maintain the biodiversity of species have been made by government agencies and non-governmental organizations, thereby drawing a substantial amount of international attention. In the fields of biological research, biodiversity is widely measured using traditional statistical indices such as the Shannon-Wiener index, species richness, evenness, and relative dominance of species. However, some biologists and ecologists have difficulty using these indices because they require advanced mathematical knowledge and computational techniques. Therefore, we developed VBioindex, a user-friendly program that is capable of measuring the Shannon-Wiener index, species richness, evenness, and relative dominance. VBioindex serves as an easy to use interface and visually represents the results in the form of a simple chart and in addition, VBioindex offers functions for long-term investigations of datasets using time-series analyses.

  3. Quantum information entropies for position-dependent mass Schrödinger problem

    Energy Technology Data Exchange (ETDEWEB)

    Yañez-Navarro, G. [Departamento de Física, Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, UPALM, Mexico D. F. 07738 (Mexico); Sun, Guo-Hua, E-mail: sunghdb@yahoo.com [Centro Universitario Valle de Chalco, Universidad Autónoma del Estado de México, Valle de Chalco Solidaridad, Estado de México, 56615 (Mexico); Dytrych, T., E-mail: tdytrych@gmail.com [Department of Physics and Astronomy, Louisiana State University, Baton Rouge, LA 70803-4001 (United States); Launey, K.D., E-mail: kristina@baton.phys.lsu.edu [Department of Physics and Astronomy, Louisiana State University, Baton Rouge, LA 70803-4001 (United States); Dong, Shi-Hai, E-mail: dongsh2@yahoo.com [Departamento de Física, Escuela Superior de Física y Matemáticas, Instituto Politécnico Nacional, Edificio 9, UPALM, Mexico D. F. 07738 (Mexico); Department of Physics and Astronomy, Louisiana State University, Baton Rouge, LA 70803-4001 (United States); Draayer, J.P., E-mail: draayer@sura.org [Department of Physics and Astronomy, Louisiana State University, Baton Rouge, LA 70803-4001 (United States)

    2014-09-15

    The Shannon entropy for the position-dependent Schrödinger equation for a particle with a nonuniform solitonic mass density is evaluated in the case of a trivial null potential. The position S{sub x} and momentum S{sub p} information entropies for the three lowest-lying states are calculated. In particular, for these states, we are able to derive analytical solutions for the S{sub x} entropy as well as for the Fourier transformed wave functions, while the S{sub p} quantity is calculated numerically. We notice the behavior of the S{sub x} entropy, namely, it decreases as the mass barrier width narrows and becomes negative beyond a particular width. The negative Shannon entropy exists for the probability densities that are highly localized. The mass barrier determines the stability of the system. The dependence of S{sub p} on the width is contrary to the one for S{sub x}. Some interesting features of the information entropy densities ρ{sub s}(x) and ρ{sub s}(p) are demonstrated. In addition, the Bialynicki-Birula–Mycielski (BBM) inequality is tested for a number of states and found to hold for all the cases.

  4. Quantum information entropies for position-dependent mass Schrödinger problem

    International Nuclear Information System (INIS)

    Yañez-Navarro, G.; Sun, Guo-Hua; Dytrych, T.; Launey, K.D.; Dong, Shi-Hai; Draayer, J.P.

    2014-01-01

    The Shannon entropy for the position-dependent Schrödinger equation for a particle with a nonuniform solitonic mass density is evaluated in the case of a trivial null potential. The position S x and momentum S p information entropies for the three lowest-lying states are calculated. In particular, for these states, we are able to derive analytical solutions for the S x entropy as well as for the Fourier transformed wave functions, while the S p quantity is calculated numerically. We notice the behavior of the S x entropy, namely, it decreases as the mass barrier width narrows and becomes negative beyond a particular width. The negative Shannon entropy exists for the probability densities that are highly localized. The mass barrier determines the stability of the system. The dependence of S p on the width is contrary to the one for S x . Some interesting features of the information entropy densities ρ s (x) and ρ s (p) are demonstrated. In addition, the Bialynicki-Birula–Mycielski (BBM) inequality is tested for a number of states and found to hold for all the cases

  5. ETHNOBOTANICAL CHARACTERIZATION OF FOREST ESSENCES WITH MEDICINAL PROPERTIES USED BY THE XIPAYA ETHNICITY IN THE CITY OF ALTAMIRA-PA

    Directory of Open Access Journals (Sweden)

    Joielan Xipaia dos Santos

    2016-06-01

    Full Text Available The aim of this study was to carry out an ethnobotanical characterization of forest essences with medicinal properties used by the Xipaya ethnicity from Tukamã village in PA. For this, traditional methods for ethnobotanical surveys were used, such as the application of descriptive and qualitative questionnaires, Shannon-Wiener and Simpson diversity indexes, and Pielou’s evenness and agreement of main use (AMU indexes. The most cited botanical families were Fabaceae, Moraceae, Lecythidaceae, Euphorbiaceae, and Lauraceae. It was observed that the preparation methods weredifferent, and the parts of the plant that were used were also different. The Shannon-Wiener diversity index was 3.24. The Pielou’s evenness index was 0.97, and the Simpson diversity index was 0.04. All were considered significant. The species with precious bark (Aniba canelilla, red cedar (Cedrela odorata, Genipa (Genipa Americana, Pink Ipê (Tabebuia impetiginosa, Mulungu (Erythrina mulungu, Quassia (Quassia amara, and dragon's blood (Croton urucurana were unanimous regarding AMU. Therefore, we observed that the Xipaya community, from the Tukamã village, still hold enough information on medicinal forest essences, the women being the main key holders of these practices and thus contributing to the education, culture, and lifestyle of this community. Keywords: Indigenous women, biodiversity of species, medicinal plants.

  6. Detection and Characterization of Hedgerows Using TerraSAR-X Imagery

    Directory of Open Access Journals (Sweden)

    Julie Betbeder

    2014-04-01

    Full Text Available Whilst most hedgerow functions depend upon hedgerow structure and hedgerow network patterns, in many ecological studies information on the fragmentation of hedgerows network and canopy structure is often retrieved in the field in small areas using accurate ground surveys and estimated over landscapes in a semi-quantitative manner. This paper explores the use of radar SAR imagery to (i detect hedgerow networks; and (ii describe the hedgerow canopy heterogeneity using TerraSAR-X imagery. The extraction of hedgerow networks was achieved using an object-oriented method using two polarimetric parameters: the Single Bounce and the Shannon Entropy derived from one TerraSAR-X image. The hedgerow canopy heterogeneity estimated from field measurements was compared with two backscattering coefficients and three polarimetric parameters derived from the same image. The results show that the hedgerow network and its fragmentation can be identified with a very good accuracy (Kappa index: 0.92. This study also reveals the high correlation between one polarimetric parameter, the Shannon entropy, and the canopy fragmentation measured in the field. Therefore, VHSR radar images can both precisely detect the presence of wooded hedgerow networks and characterize their structure, which cannot be achieved with optical images.

  7. Experiments of 10 Gbit/sec quantum stream cipher applicable to optical Ethernet and optical satellite link

    Science.gov (United States)

    Hirota, Osamu; Ohhata, Kenichi; Honda, Makoto; Akutsu, Shigeto; Doi, Yoshifumi; Harasawa, Katsuyoshi; Yamashita, Kiichi

    2009-08-01

    The security issue for the next generation optical network which realizes Cloud Computing System Service with data center" is urgent problem. In such a network, the encryption by physical layer which provide super security and small delay should be employed. It must provide, however, very high speed encryption because the basic link is operated at 2.5 Gbit/sec or 10 Gbit/sec. The quantum stream cipher by Yuen-2000 protocol (Y-00) is a completely new type random cipher so called Gauss-Yuen random cipher, which can break the Shannon limit for the symmetric key cipher. We develop such a cipher which has good balance of the security, speed and cost performance. In SPIE conference on quantum communication and quantum imaging V, we reported a demonstration of 2.5 Gbit/sec system for the commercial link and proposed how to improve it to 10 Gbit/sec. This paper reports a demonstration of the Y-00 cipher system which works at 10 Gbit/sec. A transmission test in a laboratory is tried to get the basic data on what parameters are important to operate in the real commercial networks. In addition, we give some theoretical results on the security. It is clarified that the necessary condition to break the Shannon limit requires indeed the quantum phenomenon, and that the full information theoretically secure system is available in the satellite link application.

  8. Bits and q-bits as versatility measures

    Directory of Open Access Journals (Sweden)

    José R.C. Piqueira

    2004-06-01

    Full Text Available Using Shannon information theory is a common strategy to measure any kind of variability in a signal or phenomenon. Some methods were developed to adapt information entropy measures to bird song data trying to emphasize its versatility aspect. This classical approach, using the concept of bit, produces interesting results. Now, the original idea developed in this paper is to use the quantum information theory and the quantum bit (q-bit concept in order to provide a more complete vision of the experimental results.Usar a teoria da informação de Shannon é uma estratégia comum para medir todo tipo de variabilidade em um sinal ou fenômeno. Alguns métodos foram desenvolvidos para adaptar a medida de entropia informacional a dados de cantos de pássaro, tentando enfatizar seus aspectos de versatilidade. Essa abordagem clássica, usando o conceito de bit, produz resultados interessantes. Agora, a idéia original desenvolvida neste artigo é usar a teoria quântica da informação e o conceito de q-bit, com a finalidade de proporcionar uma visão mais completa dos resultados experimentais.

  9. Effects of rodent community diversity and composition on prevalence of an endemic bacterial pathogen - Bartonella

    Science.gov (United States)

    Bai, Y.; Kosoy, M.Y.; Calisher, C.H.; Cully, J.F.; Collinge, S.K.

    2009-01-01

    By studying Bartonella prevalence in rodent communities from 23 geographic sites in the western United States and one site in northern Mexico, the present study focused on the effects of rodent community diversity (measured by richness and Shannon index) and composition on prevalence of Bartonella infections. The analysis showed negative correlations of Bartonella prevalence with rodent richness and Shannon index. Further, Bartonella prevalence varied among rodent genera/species. Three models were applied to explain the observations. (1) Within-species/genus transmission: Bartonella strains usually are host-specific and adding non-host species would decrease Bartonella prevalence in its principal host through reduction of host contact (encounter reduction); (2) Frequency-dependence: Adding hosts would decrease the proportion of all infected individuals in the community, resulting in a reduction in the number of contacts between susceptible and infected individuals that usually leads to transmission (transmission reduction); and (3) Dominant species effect: Dominant species, if not susceptible to Bartonellae, can constrain the abundance of susceptible hosts (susceptible host regulation). These mechanisms work in concert; and the level of Bartonella prevalence is an outcome of regulation of all of these mechanisms on the entire system.

  10. [Keratinophilic fungi in soils of parks of Corrientes city, Argentina].

    Science.gov (United States)

    Sarmiento, María Mercedes; Mangiaterra, Magdalena; Bojanich, María Viviana; Basualdo, Juan Ángel; Giusiano, Gustavo

    2016-01-01

    The soil is a natural reservoir of keratinophilic fungi, which are a small but important group of filamentous fungi, some of which typically develop on keratinized tissues of living animals. There are numerous species of saprophytic fungi with recognized keratinophilic abilities, and several studies have been undertaken in order to link their presence to possible human disease. To know the biota of geophilic fungi in general and of keratinophilic fungi particularly in soils from two public parks. Soil samples from two public parks of Corrientes city, Argentina, were studied during two seasons, using the hook technique and serial dilutions for fungal isolation. Using the hook technique, 170 isolates were classified into 17 genera and 21 species, among which it is worth mentioning the presence of Microsporum canis. Shannon index for keratinophilic fungi in autumn was 2.27, and 1.92 in spring. By means of the serial dilutions technique, 278 fungi isolated were identified into 33 genera and 71 species. Shannon index in autumn was 3.9, and 3.5 in spring. The soils studied have particularly favorable conditions for the survival of pathogens and opportunistic geophilic fungi for humans and animals. Copyright © 2014 Asociación Española de Micología. Published by Elsevier Espana. All rights reserved.

  11. Entropies of the Chinese Land Use/Cover Change from 1990 to 2010 at a County Level

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    Yong Fan

    2017-01-01

    Full Text Available Land Use/Cover Change (LUCC has gradually became an important direction in the research of global changes. LUCC is a complex system, and entropy is a measure of the degree of disorder of a system. According to land use information entropy, this paper analyzes changes in land use from the perspective of the system. Research on the entropy of LUCC structures has a certain “guiding role” for the optimization and adjustment of regional land use structure. Based on the five periods of LUCC data from the year of 1990 to 2010, this paper focuses on analyzing three types of LUCC entropies among counties in China—namely, Shannon, Renyi, and Tsallis entropies. The findings suggest that: (1 Shannon entropy can reflect the volatility of the LUCC, that Renyi and Tsallis entropies also have this function when their parameter has a positive value, and that Renyi and Tsallis entropies can reflect the extreme case of the LUCC when their parameter has a negative value.; (2 The entropy of China’s LUCC is uneven in time and space distributions, and that there is a large trend during 1990–2010, the central region generally has high entropy in space.

  12. Mutual information against correlations in binary communication channels.

    Science.gov (United States)

    Pregowska, Agnieszka; Szczepanski, Janusz; Wajnryb, Eligiusz

    2015-05-19

    Explaining how the brain processing is so fast remains an open problem (van Hemmen JL, Sejnowski T., 2004). Thus, the analysis of neural transmission (Shannon CE, Weaver W., 1963) processes basically focuses on searching for effective encoding and decoding schemes. According to the Shannon fundamental theorem, mutual information plays a crucial role in characterizing the efficiency of communication channels. It is well known that this efficiency is determined by the channel capacity that is already the maximal mutual information between input and output signals. On the other hand, intuitively speaking, when input and output signals are more correlated, the transmission should be more efficient. A natural question arises about the relation between mutual information and correlation. We analyze the relation between these quantities using the binary representation of signals, which is the most common approach taken in studying neuronal processes of the brain. We present binary communication channels for which mutual information and correlation coefficients behave differently both quantitatively and qualitatively. Despite this difference in behavior, we show that the noncorrelation of binary signals implies their independence, in contrast to the case for general types of signals. Our research shows that the mutual information cannot be replaced by sheer correlations. Our results indicate that neuronal encoding has more complicated nature which cannot be captured by straightforward correlations between input and output signals once the mutual information takes into account the structure and patterns of the signals.

  13. The phlebotomine fauna (Diptera: Psychodidae of Guaraí, state of Tocantins, with an emphasis on the putative vectors of American cutaneous leishmaniasis in rural settlement and periurban areas

    Directory of Open Access Journals (Sweden)

    Maurício Luiz Vilela

    2013-08-01

    Full Text Available Phlebotomine sandflies were captured in rural settlement and periurban areas of the municipality of Guaraí in the state of Tocantins (TO, an endemic area of American cutaneous leishmaniasis (ACL. Forty-three phlebotomine species were identified, nine of which have already been recognised as ACL vectors. Eleven species were recorded for the first time in TO. Nyssomyia whitmani was the most abundant species, followed by Evandromyia bourrouli, Nyssomyia antunesi and Psychodopygus complexus. The Shannon-Wiener diversity index and the evenness index were higher in the rural settlement area than in the periurban area. The evaluation of different ecotopes within the rural area showed the highest frequencies of Ev. bourrouli and Ny. antunesi in chicken coops, whereas Ny. whitmani predominated in this ecotope in the periurban area. In the rural settlement area, Ev. bourrouli was the most frequently captured species in automatic light traps and Ps. complexus was the most prevalent in Shannon trap captures. The rural settlement environment exhibited greater phlebotomine biodiversity than the periurban area. Ps. complexus and Psychodopygus ayrozai naturally infected with Leishmania (Viannia braziliensis were identified. The data identified Ny. whitmani as a potential ACL vector in the periurban area, whereas Ps. complexus was more prevalent in the rural environment associated with settlements.

  14. Energetics of aminomethylpyrimidines: An examination of the aromaticity of nitrogen heteromonocyclic derivatives

    International Nuclear Information System (INIS)

    Galvão, Tiago L.P.; Ribeiro da Silva, Maria D.M.C.; Ribeiro da Silva, Manuel A.V.

    2013-01-01

    Highlights: • Vapour pressure study of three aminomethylpyrimidines by Knudsen effusion technique. • Enthalpies of formation of three aminomethylpyrimidines by combustion calorimetry. • NICS, HOMA, Shannon analysis used as aromaticity criteria for three aminomethylpyrimidines. • QTAIMs properties, HOMO–LUMO gap, hardness, Kekulé mode and UV–Vis spectra are analyzed. • Benzene, pyridine and pyrimidine are taken as references for the aromaticity analysis. -- Abstract: The standard (p o = 0.1 MPa) molar enthalpies of formation, in the gaseous phase, at the reference temperature of 298.15 K, of 2-amino-4-methylpyrimidine ((98.1 ± 1.6) kJ · mol −1 ), 2-amino-4,6-dimethylpyrimidine ((55.9 ± 1.8) kJ · mol −1 ) and 4-amino-2,6-dimethylpyrimidine ((60.1 ± 1.8) kJ · mol −1 ) were calculated from the enthalpies of formation, in the crystalline phase, and enthalpies of sublimation, derived, respectively, from static bomb combustion calorimetry and Knudsen effusion technique results. In order to quantify the resonance effects arising from the substitution on the pyrimidine ring, hypothetical isodesmic reactions were used to analyze the experimental gaseous-phase enthalpies of formation. The aromaticity of benzene, pyridine, pyrimidine and the substituted pyrimidines was investigated in terms of magnetic (NICS), geometric (HOMA), electronic (Shannon aromaticity, QTAIMs ring critical point properties and HOMO–LUMO gap), reactive (hardness), vibrational (Kekulé mode) and spectroscopic (UV–Vis) properties

  15. Contrasting land uses in Mediterranean agro-silvo-pastoral systems generated patchy diversity patterns of vascular plants and below-ground microorganisms.

    Science.gov (United States)

    Bagella, Simonetta; Filigheddu, Rossella; Caria, Maria Carmela; Girlanda, Mariangela; Roggero, Pier Paolo

    2014-12-01

    The aims of this paper were (i) to define how contrasting land uses affected plant biodiversity in Mediterranean agro-silvo-pastoral-systems across a gradient of disturbance regimes: cork oak forests, secondary grasslands, hay crops, grass covered vineyards, tilled vineyards; (ii) to determine whether these patterns mirrored those of below-ground microorganisms and whether the components of γ-diversity followed a similar model. The disturbance regimes affected plant assemblage composition. Species richness decreased with increasing land use intensity, the Shannon index showed the highest values in grasslands and hay crops. Plant assemblage composition patterns mirrored those of Basidiomycota and Ascomycota. Richness in Basidiomycota, denitrifying bacteria and microbial biomass showed the same trend as that observed for vascular plant richness. The Shannon index pattern of below-ground microorganisms was different from that of plants. The plant γ-diversity component model weakly mirrored those of Ascomycota. Patchy diversity patterns suggest that the maintenance of contrasting land uses associated with different productions typical of agro-silvo-pastoral-systems can guarantee the conservation of biodiversity. Copyright © 2014 Académie des sciences. Published by Elsevier SAS. All rights reserved.

  16. SCoT marker for the assessment of genetic diversity in saudi arabian date palm cultivars

    International Nuclear Information System (INIS)

    Qurainy, F.A.; Tarroum, M.

    2015-01-01

    Different types of molecular markers based on DNA have been used for the assessment of genetic diversity in the plant species. Start Codon Targeted Polymorphism (SCoT) marker has recently become the marker of choice in genetic diversity studies. SCoT marker was used for the assessment of genetic diversity in Saudi Arabian date palm cultivars. The percentage of polymorphic loci (PPL) at population level ranged from 3.28 to 13.11 with an average of 7.10. The Neis gene diversity (h) and Shannons Information index (I) were 0.033 and 0.046, respectively. However, at cultivar level, PPL, Neis gene diversity (h) and Shannons Information index (I) were 42.62, 0.090 and 0.155, respectively. Analysis of molecular variance (AMOVA) showed 48% of variation within the populations, whereas 52% was found among the populations. A hierarchical analysis of molecular variance revealed level of genetic differentiation among populations (52% of total variance, P = 0.001), consistent with the gene differentiation coefficient (Gst = 0.631). Unweighted pair group method of arithmetic averages (UPGMA) cluster analysis of the SCoT marker data divided the six cultivars and their populations into five main clusters at 0.95 genetic similarity coefficient level. (author)

  17. Composition and diversity of larval fish in the mangrove estuarine area of Marudu Bay, Sabah, Malaysia.

    Science.gov (United States)

    Rezagholinejad, Sadaf; Arshad, Aziz; Amin, S M Nurul; Ara, Roushon

    2016-07-01

    The composition of fish larvae and their diversity in different habitats are very important for fisheries management. Larval fishes were investigated in a mangrove estuary of Marudu Bay, Sabah, Malaysia from October 2012 to September 2013 at five different sites. Monthly samples of fish larvae were collected at five sampling sites by a plankton net with a mouth opening of 40.5 cm in diameter. In total, 3879 larval fish were caught in the investigated area. The mean density of ichthyoplankton at this area was 118 larvae/100 m(3). The fish larval assemblage comprised of 20 families whereas 13 families occurred at St1, 16 at St2, 16 at St3, 12 at St4 and 16 at St5. The top major families were Sillaginidae, Engraulidae, Mugilidae and Sparidae with Sillaginidae consisted 44% of total larval composition. St3 with 143 larvae/100 m(3) had the highest density amongst the stations which was due to higher abundance of Sillaginidae. Shannon-Wiener diversity index represented significant variation during monsoon and inter-monsoon seasons, peaking in the months December-January and May-June. However, Shannon-Wiener index, evenness and family richness showed significant differences among stations and months (p < 0.05).

  18. Diversity And Abundance Of Arthropods At Mbeya University Of Science And Technology Tanzania

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    Fredrick Ojija

    2015-08-01

    Full Text Available Despite the high abundance of arthropods in many terrestrial environments our understanding of their ecological diversity and abundance remain unknown in some habitats. The aim of this study is to assess the abundance diversity and species richness of some arthropods found in grassland and woodland habitats at Mbeya University of Science and Technology in Tanzania. A total of 1719 arthropods belonging to 63 species under 12 orders and 46 families were collected. Parameters such as Shannon index Simpson index Margalef index Evenness index and Sorenson similarity index were used to analyse the diversity of arthropods. Result showed that Hymenoptera 33.101 Coleoptera 28.098 and Orthoptera 17.510 were the most dominant orders whereas the least abundant order were Diptera 0.814 and Scolopendromorpha 0.291. The grassland showed high species richness Margalef index D 6.930 abundance n 1177 Evenness E 0.854 and Shannon diversity H 3.339 of arthropods. The abundance of arthropod groups between grassland and woodland differed significantly p0.05. Sorensen similarity index in both habitats showed 53.5 similarity. Therefore result indicates that the grassland habitat has the potential to support arthropod diversity and act as effective refugia for some arthropods from woodland.

  19. Demersal fishes and their distribution in estuarine waters of Mahakam Delta, East Kalimantan

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    IWAN SUYATNA

    2010-10-01

    Full Text Available Suyatna I, Bratawinata AA, Sidik AS, Ruchaemi A (2011 Demersal fishes and their distribution in estuarine waters of Mahakam Delta, East Kalimantan. Biodiversitas 12: 204-210. The study aimed (i to identify of the demersal fishes, (ii to analyze the diversity and (iii to determine their distribution. Surveys were carried out between August 2009 and January 2010 in Mahakam Delta, East Kalimantan. Data were analyzed using several indices of Shannon Weaver, Sympson, Margalef species richness, and Bray Curtis distance. The canonical correspondence analysis (CCA was also used to correlate between fish species and their environmental factors and to show the fish distribution. Sixty samplings were done using bottom-trawl at various water depths from one to fourty two meters to collect the data. Taxonomically, during the study, 10 orders, 61 families, 87 genera and 131 species of fish with 43340 individuals were identified. Among the families, Leiognathidae was the most important group of fish, they distributed throughout the depths. Meanwhile CCA showed that Leiognathidae and Sciaenidae were observed to be rich in the shallow water. Generally, index of Shannon Weaver, Sympson and Margalef species richness ranged between; 0.52 and 2.48; 0.11 and 0.82; 2.24 and 18.61 respectively. Bray Curtis distance indicated the significant difference of individual number of demersal fishes between shallow and deep waters.

  20. KEANEKARAGAMAN SPESIES TUMBUHAN DI AREALNILAI KONSERVASI TINGGI (NKT PERKEBUNAN KELAPA SAWIT PROVINSI RIAU

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    Hafizah Nahlunnisa

    2016-11-01

    Full Text Available Palm oil plantation is important role of increased economic in Indonesia. Beside of that, the exsistence of palm oil plantation has negative effect in ecology, that is decreasead of plant diversity. The area of high conservation value (HCV is an effort to reducing the negative impact of oil palm plantation. The purpose of this study is to identify the level of diversity of plant species and forms of community interaction in the area of HCV. It is can used to basic of management of HCV areas that can be exploited in a sustainable manner. Data collected in the three palm oil companies in Riau Province that PTPN V, PT Mitra Unggul Pusaka (MUP, and PT Ivomas Tunggal on March till April 2016. The data collection was using a single plot and interviews. Data were analyzed using Margalef diversity index, Shannon wiener index, Evenness index, and descriptive analysis. The result showed that the level of diversity of plant species in HCV in each company is different. The highest value of plant based species richness Margalef index is PTPN V (16,836, while the value of the highest plant species diversity by Shannon wiener index is PT MUP (3,773. The highest value by evenness index is PT MUP (0,901.Community interaction that occurs in the region of HCV is utilization such as animal feed, food plants, firewood, and the honey-producing trees.Keywords: diversity of species,interaction, oil palm plantations, plants