In silico analysis of Eucalyptus thioredoxins

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Aulus Estevão Barbosa

2005-01-01

Full Text Available The Eucalyptus Genome Sequencing Project (FORESTs, an initiative from the Brazilian ONSA consortium (Organization for Nucleotide Sequencing and Analysis, has achieved the sequencing of 123.889 EST clones from 18 different cDNA libraries. We have investigated the FORESTs data set to identify EST clusters potentially encoding thioredoxins (TRX. Two types of thioredoxin families described in plants, chloroplastic (TRXm/f/x/y and cytosolic (TRXh, have been found in the transcriptome. Putative typical TRXs have been identified in fifteen clusters, four m-type, seven h-type, two f-type, one cluster for each x/y-types and one putative homologue of the TDX gene from Arabidopsis thaliana. One cluster presents an atypical active site WCMPS, different from the conserved WCGPC present in the other 15 clusters, and corresponds to a subgroup of cytosolic thioredoxins. Except in specific libraries from callus, roots, seedlings and wood tissues, thioredoxin deduced ESTs are found in all remaining libraries. According to the calculated frequencies of ESTs, chloroplastic thioredoxins are preferentially present in green tissues such as leaves whilst cytoplasmic thioredoxins are more general but demonstrate elevated frequencies in seedlings and flower tissues. TRX frequency patterns in the Eucalyptus transcriptome seem to indicate a good coherence with data from Arabidopsis thaliana gene expression.

Transcriptome sequencing of two phenotypic mosaic Eucalyptus trees reveals large scale transcriptome re-modelling.

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Amanda Padovan

Full Text Available Phenotypic mosaic trees offer an ideal system for studying differential gene expression. We have investigated two mosaic eucalypt trees from two closely related species (Eucalyptus melliodora and E. sideroxylon, which each support two types of leaves: one part of the canopy is resistant to insect herbivory and the remaining leaves are susceptible. Driving this ecological distinction are differences in plant secondary metabolites. We used these phenotypic mosaics to investigate genome wide patterns of foliar gene expression with the aim of identifying patterns of differential gene expression and the somatic mutation(s that lead to this phenotypic mosaicism. We sequenced the mRNA pool from leaves of the resistant and susceptible ecotypes from both mosaic eucalypts using the Illumina HiSeq 2000 platform. We found large differences in pathway regulation and gene expression between the ecotypes of each mosaic. The expression of the genes in the MVA and MEP pathways is reflected by variation in leaf chemistry, however this is not the case for the terpene synthases. Apart from the terpene biosynthetic pathway, there are several other metabolic pathways that are differentially regulated between the two ecotypes, suggesting there is much more phenotypic diversity than has been described. Despite the close relationship between the two species, they show large differences in the global patterns of gene and pathway regulation.

Eucalyptus hairy roots, a fast, efficient and versatile tool to explore function and expression of genes involved in wood formation.

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Plasencia, Anna; Soler, Marçal; Dupas, Annabelle; Ladouce, Nathalie; Silva-Martins, Guilherme; Martinez, Yves; Lapierre, Catherine; Franche, Claudine; Truchet, Isabelle; Grima-Pettenati, Jacqueline

2016-06-01

Eucalyptus are of tremendous economic importance being the most planted hardwoods worldwide for pulp and paper, timber and bioenergy. The recent release of the Eucalyptus grandis genome sequence pointed out many new candidate genes potentially involved in secondary growth, wood formation or lineage-specific biosynthetic pathways. Their functional characterization is, however, hindered by the tedious, time-consuming and inefficient transformation systems available hitherto for eucalypts. To overcome this limitation, we developed a fast, reliable and efficient protocol to obtain and easily detect co-transformed E. grandis hairy roots using fluorescent markers, with an average efficiency of 62%. We set up conditions both to cultivate excised roots in vitro and to harden composite plants and verified that hairy root morphology and vascular system anatomy were similar to wild-type ones. We further demonstrated that co-transformed hairy roots are suitable for medium-throughput functional studies enabling, for instance, protein subcellular localization, gene expression patterns through RT-qPCR and promoter expression, as well as the modulation of endogenous gene expression. Down-regulation of the Eucalyptus cinnamoyl-CoA reductase1 (EgCCR1) gene, encoding a key enzyme in lignin biosynthesis, led to transgenic roots with reduced lignin levels and thinner cell walls. This gene was used as a proof of concept to demonstrate that the function of genes involved in secondary cell wall biosynthesis and wood formation can be elucidated in transgenic hairy roots using histochemical, transcriptomic and biochemical approaches. The method described here is timely because it will accelerate gene mining of the genome for both basic research and industry purposes. © 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis.

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Ghosh Dasgupta, Modhumita; Dharanishanthi, Veeramuthu

2017-09-05

Ecophysiological studies in Eucalyptus have shown that water is the principal factor limiting stem growth. Effect of water deficit conditions on physiological and biochemical parameters has been extensively reported in Eucalyptus. The present study was conducted to identify major polyethylene glycol induced water stress responsive transcripts in Eucalyptus grandis using gene co-expression network. A customized array representing 3359 water stress responsive genes was designed to document their expression in leaves of E. grandis cuttings subjected to -0.225MPa of PEG treatment. The differentially expressed transcripts were documented and significantly co-expressed transcripts were used for construction of network. The co-expression network was constructed with 915 nodes and 3454 edges with degree ranging from 2 to 45. Ninety four GO categories and 117 functional pathways were identified in the network. MCODE analysis generated 27 modules and module 6 with 479 nodes and 1005 edges was identified as the biologically relevant network. The major water responsive transcripts represented in the module included dehydrin, osmotin, LEA protein, expansin, arabinogalactans, heat shock proteins, major facilitator proteins, ARM repeat proteins, raffinose synthase, tonoplast intrinsic protein and transcription factors like DREB2A, ARF9, AGL24, UNE12, WLIM1 and MYB66, MYB70, MYB 55, MYB 16 and MYB 103. The coordinated analysis of gene expression patterns and coexpression networks developed in this study identified an array of transcripts that may regulate PEG induced water stress responses in E. grandis. Copyright © 2017 Elsevier B.V. All rights reserved.

TANNIN CONTENT DETERMINATION IN THE BARK OF Eucalyptus spp

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Paulo Fernando Trugilho

2003-07-01

Full Text Available The objective of this study was to determine the tannin contents in the bark oftwenty-five species of Eucalyptus through two extraction methods, one using hot water andthe other a sequence of toluene and ethanol. The results showed that the extraction methodspresented significant differences in the tannin contents. The method using the sequencetoluene and ethanol, for most of the species, promoted a larger extraction of tannin. The hotwater method presented higher contents of tannin for Eucalyptus cloeziana (40,31%,Eucalyptus melanophoia (20,49% and Eucalyptus paniculata (16,03%. In the toluene andethanol method the species with higher tannin content was Eucalyptus cloeziana (31,00%,Eucalyptus tereticornis (22,83% and Eucalyptus paniculata (17,64%. The Eucalyptuscloeziana presented great potential as commercial source of tannin, independent of theextraction method considered.

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence.

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Grattapaglia, Dario; Mamani, Eva M C; Silva-Junior, Orzenil B; Faria, Danielle A

2015-03-01

Keystone species in their native ranges, eucalypts, are ecologically and genetically very diverse, growing naturally along extensive latitudinal and altitudinal ranges and variable environments. Besides their ecological importance, eucalypts are also the most widely planted trees for sustainable forestry in the world. We report the development of a novel collection of 535 microsatellites for species of Eucalyptus, 494 designed from ESTs and 41 from genomic libraries. A selected subset of 223 was evaluated for individual identification, parentage testing, and ancestral information content in the two most extensively studied species, Eucalyptus grandis and Eucalyptus globulus. Microsatellites showed high transferability and overlapping allele size range, suggesting they have arisen still in their common ancestor and confirming the extensive genome conservation between these two species. A consensus linkage map with 437 microsatellites, the most comprehensive microsatellite-only genetic map for Eucalyptus, was built by assembling segregation data from three mapping populations and anchored to the Eucalyptus genome. An overall colinearity between recombination-based and physical positioning of 84% of the mapped microsatellites was observed, with some ordering discrepancies and sporadic locus duplications, consistent with the recently described whole genome duplication events in Eucalyptus. The linkage map covered 95.2% of the 605.8-Mbp assembled genome sequence, placing one microsatellite every 1.55 Mbp on average, and an overall estimate of physical to recombination distance of 618 kbp/cM. The genetic parameters estimates together with linkage and physical position data for this large set of microsatellites should assist marker choice for genome-wide population genetics and comparative mapping in Eucalyptus. © 2014 John Wiley & Sons Ltd.

Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic.

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Marcon, Helena Sanches; Domingues, Douglas Silva; Silva, Juliana Costa; Borges, Rafael Junqueira; Matioli, Fábio Filippi; Fontes, Marcos Roberto de Mattos; Marino, Celso Luis

2015-08-14

In Eucalyptus genus, studies on genome composition and transposable elements (TEs) are particularly scarce. Nearly half of the recently released Eucalyptus grandis genome is composed by retrotransposons and this data provides an important opportunity to understand TE dynamics in Eucalyptus genome and transcriptome. We characterized nine families of transcriptionally active LTR retrotransposons from Copia and Gypsy superfamilies in Eucalyptus grandis genome and we depicted genomic distribution and copy number in two Eucalyptus species. We also evaluated genomic polymorphism and transcriptional profile in three organs of five Eucalyptus species. We observed contrasting genomic and transcriptional behavior in the same family among different species. RLC_egMax_1 was the most prevalent family and RLC_egAngela_1 was the family with the lowest copy number. Most families of both superfamilies have their insertions occurring Eucalyptus species. Using EST analysis and qRT-PCRs, we observed transcriptional activity in several tissues and in all evaluated species. In some families, osmotic stress increases transcript values. Our strategy was successful in isolating transcriptionally active retrotransposons in Eucalyptus, and each family has a particular genomic and transcriptional pattern. Overall, our results show that retrotransposon activity have differentially affected genome and transcriptome among Eucalyptus species.

Comparative interrogation of the developing xylem transcriptomes of two wood-forming species: Populus trichocarpa and Eucalyptus grandis.

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Hefer, Charles A; Mizrachi, Eshchar; Myburg, Alexander A; Douglas, Carl J; Mansfield, Shawn D

2015-06-01

Wood formation is a complex developmental process governed by genetic and environmental stimuli. Populus and Eucalyptus are fast-growing, high-yielding tree genera that represent ecologically and economically important species suitable for generating significant lignocellulosic biomass. Comparative analysis of the developing xylem and leaf transcriptomes of Populus trichocarpa and Eucalyptus grandis together with phylogenetic analyses identified clusters of homologous genes preferentially expressed during xylem formation in both species. A conserved set of 336 single gene pairs showed highly similar xylem preferential expression patterns, as well as evidence of high functional constraint. Individual members of multi-gene orthologous clusters known to be involved in secondary cell wall biosynthesis also showed conserved xylem expression profiles. However, species-specific expression as well as opposite (xylem versus leaf) expression patterns observed for a subset of genes suggest subtle differences in the transcriptional regulation important for xylem development in each species. Using sequence similarity and gene expression status, we identified functional homologs likely to be involved in xylem developmental and biosynthetic processes in Populus and Eucalyptus. Our study suggests that, while genes involved in secondary cell wall biosynthesis show high levels of gene expression conservation, differential regulation of some xylem development genes may give rise to unique xylem properties. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Effects of the bleaching sequence on the optical brighteners action in eucalyptus kraft pulp

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Mauro Manfredi

2014-06-01

Full Text Available During the bleaching process the pulp is treated with chemical reagents that can be retained in the pulp and interfere in the action of the optical brighteners. Different bleaching sequences can produce pulps at the same brightness but with different potential to whiteness increase when treated with optical brighteners. The objective of this study was to evaluate the influence of the bleaching sequence on the efficiency of disulphonated and tetrasulphonated optical brighteners. Eucalyptus kraft pulp was bleached using four different bleaching sequences. For each pulp three brightness targets were aimeds. For each bleaching sequence mathematical model was generated for predicting the final pulp whiteness according to the initial brightness and the optical brightener charge applied. The presence of organochlorine residues in the pulp reduced the effectiveness of the optical brighteners. Therefore, bleaching sequences that use low chlorine dioxide charge favors for greater gains in whiteness with the application of optical brighteners. The replacement of the final chlorine dioxide bleaching stage with a hydrogen peroxide one in the sequence increased the efficiency of the optical brightening agents.

Comparative Genomics Analyses Reveal Extensive Chromosome Colinearity and Novel Quantitative Trait Loci in Eucalyptus

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Weng, Qijie; Li, Mei; Yu, Xiaoli; Guo, Yong; Wang, Yu; Zhang, Xiaohong; Gan, Siming

2015-01-01

Dense genetic maps, along with quantitative trait loci (QTLs) detected on such maps, are powerful tools for genomics and molecular breeding studies. In the important woody genus Eucalyptus, the recent release of E. grandis genome sequence allows for sequence-based genomic comparison and searching for positional candidate genes within QTL regions. Here, dense genetic maps were constructed for E. urophylla and E. tereticornis using genomic simple sequence repeats (SSR), expressed sequence tag (EST) derived SSR, EST-derived cleaved amplified polymorphic sequence (EST-CAPS), and diversity arrays technology (DArT) markers. The E. urophylla and E. tereticornis maps comprised 700 and 585 markers across 11 linkage groups, totaling at 1,208.2 and 1,241.4 cM in length, respectively. Extensive synteny and colinearity were observed as compared to three earlier DArT-based eucalypt maps (two maps with E. grandis × E. urophylla and one map of E. globulus) and with the E. grandis genome sequence. Fifty-three QTLs for growth (10–56 months of age) and wood density (56 months) were identified in 22 discrete regions on both maps, in which only one colocalizaiton was found between growth and wood density. Novel QTLs were revealed as compared with those previously detected on DArT-based maps for similar ages in Eucalyptus. Eleven to 585 positional candidate genes were obained for a 56-month-old QTL through aligning QTL confidence interval with the E. grandis genome. These results will assist in comparative genomics studies, targeted gene characterization, and marker-assisted selection in Eucalyptus and the related taxa. PMID:26695430

Comparative Genomics Analyses Reveal Extensive Chromosome Colinearity and Novel Quantitative Trait Loci in Eucalyptus.

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Fagen Li

Full Text Available Dense genetic maps, along with quantitative trait loci (QTLs detected on such maps, are powerful tools for genomics and molecular breeding studies. In the important woody genus Eucalyptus, the recent release of E. grandis genome sequence allows for sequence-based genomic comparison and searching for positional candidate genes within QTL regions. Here, dense genetic maps were constructed for E. urophylla and E. tereticornis using genomic simple sequence repeats (SSR, expressed sequence tag (EST derived SSR, EST-derived cleaved amplified polymorphic sequence (EST-CAPS, and diversity arrays technology (DArT markers. The E. urophylla and E. tereticornis maps comprised 700 and 585 markers across 11 linkage groups, totaling at 1,208.2 and 1,241.4 cM in length, respectively. Extensive synteny and colinearity were observed as compared to three earlier DArT-based eucalypt maps (two maps with E. grandis × E. urophylla and one map of E. globulus and with the E. grandis genome sequence. Fifty-three QTLs for growth (10-56 months of age and wood density (56 months were identified in 22 discrete regions on both maps, in which only one colocalizaiton was found between growth and wood density. Novel QTLs were revealed as compared with those previously detected on DArT-based maps for similar ages in Eucalyptus. Eleven to 585 positional candidate genes were obained for a 56-month-old QTL through aligning QTL confidence interval with the E. grandis genome. These results will assist in comparative genomics studies, targeted gene characterization, and marker-assisted selection in Eucalyptus and the related taxa.

Protein domain evolution is associated with reproductive diversification and adaptive radiation in the genus Eucalyptus.

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Kersting, Anna R; Mizrachi, Eshchar; Bornberg-Bauer, Erich; Myburg, Alexander A

2015-06-01

Eucalyptus is a pivotal genus within the rosid order Myrtales with distinct geographic history and adaptations. Comparative analysis of protein domain evolution in the newly sequenced Eucalyptus grandis genome and other rosid lineages sheds light on the adaptive mechanisms integral to the success of this genus of woody perennials. We reconstructed the ancestral domain content to elucidate the gain, loss and expansion of protein domains and domain arrangements in Eucalyptus in the context of rosid phylogeny. We used functional gene ontology (GO) annotation of genes to investigate the possible biological and evolutionary consequences of protein domain expansion. We found that protein modulation within the angiosperms occurred primarily on the level of expansion of certain domains and arrangements. Using RNA-Seq data from E. grandis, we showed that domain expansions have contributed to tissue-specific expression of tandemly duplicated genes. Our results indicate that tandem duplication of genes, a key feature of the Eucalyptus genome, has played an important role in the expansion of domains, particularly in proteins related to the specialization of reproduction and biotic and abiotic interactions affecting root and floral biology, and that tissue-specific expression of proteins with expanded domains has facilitated subfunctionalization in domain families. © 2014 University of Pretoria New Phytologist © 2014 New Phytologist Trust.

Development and Testing of New Gene-Homologous EST-SSRs for Eucalyptus gomphocephala (Myrtaceae

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Donna Bradbury

2013-07-01

Full Text Available Premise of the study: New microsatellite (simple sequence repeat [SSR] primers were developed from Eucalyptus expressed sequence tags (ESTs and optimized for genetic studies of the southwestern Australian tree E. gomphocephala, which is severely impacted by tree health decline and habitat fragmentation. Methods and Results: A total of 133 gene-homologous EST-SSR primer pairs were designed for Eucalyptus, and 44 were screened in E. gomphocephala. Of these, 17 produced reliable amplification products and 11 were polymorphic. Between two and 13 alleles were observed per locus, and observed heterozygosities ranged from 0.172 to 0.867. All 17 EST-SSRs that amplified E. gomphocephala cross-amplified to at least one of E. marginata, E. camaldulensis, and E. victrix. Conclusions: This set of EST-SSR primer pairs will be valuable tools for future population genetic studies of E. gomphocephala and other eucalypts, particularly for studying gene-linked variation and informing seed-sourcing strategies for ecological restoration.

Microsatellite Primers Identified by 454 Sequencing in the Floodplain Tree Species Eucalyptus victrix (Myrtaceae

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Paul G. Nevill

2013-05-01

Full Text Available Premise of the study: Microsatellite primers were developed for Eucalyptus victrix (Myrtaceae to evaluate the population and spatial genetic structure of this widespread northwestern Australian riparian tree species, which may be impacted by hydrological changes associated with mining activity. Methods and Results: 454 GS-FLX shotgun sequencing was used to obtain 1895 sequences containing putative microsatellite motifs. Ten polymorphic microsatellite loci were identified and screened for variation in individuals from two populations in the Pilbara region. Observed heterozygosities ranged from 0.44 to 0.91 (mean: 0.66 and the number of alleles per locus ranged from five to 25 (average: 11. Conclusions: These microsatellite loci will be useful in future studies of population and spatial genetic structure in E. victrix, and inform the development of seed sourcing strategies for the species.

A model system to study the lignification process in Eucalyptus globulus.

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Araújo, Pedro; Cesarino, Igor; Mayer, Juliana Lischka Sampaio; Ferrari, Ilse Fernanda; Kiyota, Eduardo; Sawaya, Alexandra Christine Helena Frankland; Paes Leme, Adriana Franco; Mazzafera, Paulo

2014-09-01

Recalcitrance of plant biomass is closely related to the presence of the phenolic heteropolymer lignin in secondary cell walls, which has a negative effect on forage digestibility, biomass-to-biofuels conversion and chemical pulping. The genus Eucalyptus is the main source of wood for pulp and paper industry. However, when compared to model plants such as Arabidopsis thaliana and poplar, relatively little is known about lignin biosynthesis in Eucalyptus and only a few genes were functionally characterized. An efficient, fast and inexpensive in vitro system was developed to study lignification in Eucalyptus globulus and to evaluate the potential role of candidate genes in this biological process. Seedlings were grown in four different conditions, in the presence or absence of light and with or without sucrose in the growth medium, and several aspects of lignin metabolism were evaluated. Our results showed that light and, to a lesser extent, sucrose induced lignin biosynthesis, which was followed by changes in S/G ratio, lignin oligomers accumulation and gene expression. In addition, higher total peroxidase activity and differential isoperoxidase profile were observed when seedlings were grown in the presence of light and sucrose. Peptide sequencing allowed the identification of differentially expressed peroxidases, which can be considered potential candidate class III peroxidases involved in lignin polymerization in E. globulus. © 2014 Scandinavian Plant Physiology Society.

Validation of reference genes from Eucalyptus spp. under different stress conditions

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Moura Jullyana Cristina Magalhães Silva

2012-11-01

Full Text Available Abstract Background The genus Eucalyptus consists of approximately 600 species and subspecies and has a physiological plasticity that allows some species to propagate in different regions of the world. Eucalyptus is a major source of cellulose for paper manufacturing, and its cultivation is limited by weather conditions, particularly water stress and low temperatures. Gene expression studies using quantitative reverse transcription polymerase chain reaction (qPCR require reference genes, which must have stable expression to facilitate the comparison of the results from analyses using different species, tissues, and treatments. Such studies have been limited in eucalyptus. Results Eucalyptus globulus Labill, Eucalyptus urograndis (hybrid from Eucalyptus urophylla S.T. Blake X Eucalyptus grandis Hill ex-Maiden and E. uroglobulus (hybrid from E. urograndis X E. globulus were subjected to different treatments, including water deficiency and stress recovery, low temperatures, presence or absence of light, and their respective controls. Except for treatment with light, which examined the seedling hypocotyl or apical portion of the stem, the expression analyses were conducted in the apical and basal parts of the stem. To select the best pair of genes, the bioinformatics tools GeNorm and NormFinder were compared. Comprehensive analyses that did not differentiate between species, treatments, or tissue types, showed that IDH (isocitrate dehydrogenase, SAND (SAND protein, ACT (actin, and A-Tub (α-tubulin genes were the most stable. IDH was the most stable gene in all of the treatments. Conclusion Comparing these results with those of other studies on eucalyptus, we concluded that five genes are stable in different species and experimental conditions: IDH, SAND, ACT, A-Tub, and UBQ (ubiquitin. It is usually recommended a minimum of two reference genes is expression analysis; therefore, we propose that IDH and two others genes among the five identified

The floral transcriptome of Eucalyptus grandis

CSIR Research Space (South Africa)

Vining, KJ

2015-10-01

Full Text Available As a step toward functional annotation of genes required for floral initiation and development within the Eucalyptus genome, we used short read sequencing to analyze transcriptomes of floral buds from early and late developmental stages...

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.

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Bartholomé, Jérôme; Mandrou, Eric; Mabiala, André; Jenkins, Jerry; Nabihoudine, Ibouniyamine; Klopp, Christophe; Schmutz, Jeremy; Plomion, Christophe; Gion, Jean-Marc

2015-06-01

Genetic maps are key tools in genetic research as they constitute the framework for many applications, such as quantitative trait locus analysis, and support the assembly of genome sequences. The resequencing of the two parents of a cross between Eucalyptus urophylla and Eucalyptus grandis was used to design a single nucleotide polymorphism (SNP) array of 6000 markers evenly distributed along the E. grandis genome. The genotyping of 1025 offspring enabled the construction of two high-resolution genetic maps containing 1832 and 1773 markers with an average marker interval of 0.45 and 0.5 cM for E. grandis and E. urophylla, respectively. The comparison between genetic maps and the reference genome highlighted 85% of collinear regions. A total of 43 noncollinear regions and 13 nonsynthetic regions were detected and corrected in the new genome assembly. This improved version contains 4943 scaffolds totalling 691.3 Mb of which 88.6% were captured by the 11 chromosomes. The mapping data were also used to investigate the effect of population size and number of markers on linkage mapping accuracy. This study provides the most reliable linkage maps for Eucalyptus and version 2.0 of the E. grandis genome. © 2014 CIRAD. New Phytologist © 2014 New Phytologist Trust.

Eucalyptus ESTs involved in the production of 9-cis epoxycarotenoid dioxygenase, a regulatory enzyme of abscisic acid production

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Iraê A. Guerrini

2005-01-01

Full Text Available Abscisic acid (ABA regulates stress responses in plants, and genomic tools can help us to understand the mechanisms involved in that process. FAPESP, a Brazilian research foundation, in association with four private forestry companies, has established the FORESTs database (https://forests.esalq.usp.br. A search was carried out in the Eucalyptus expressed sequence tag database to find ESTs involved with 9-cis epoxycarotenoid dioxygenase (NCED, the regulatory enzyme for ABA biosynthesis, using the basic local BLAST alignment tool. We found four clusters (EGEZLV2206B11.g, EGJMWD2252H08.g, EGBFRT3107F10.g, and EGEQFB1200H10.g, which represent similar sequences of the gene that produces NCED. Data showed that the EGBFRT3107F10.g cluster was similar to the maize (Zea mays NCED enzyme, while EGEZLV2206B11.g and EGJMWD2252H08.g clusters were similar to the avocado (Persea americana NCED enzyme. All Eucalyptus clusters were expressed in several tissues, especially in flower buds, where ABA has a special participation during the floral development process.

Oldest Known Eucalyptus Macrofossils Are from South America

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Zamaloa, María C.; Nixon, Kevin C.; González, Cynthia C.; Wilf, Peter; Cúneo, N. Rubén; Johnson, Kirk R.

2011-01-01

The evolutionary history of Eucalyptus and the eucalypts, the larger clade of seven genera including Eucalyptus that today have a natural distribution almost exclusively in Australasia, is poorly documented from the fossil record. Little physical evidence exists bearing on the ancient geographical distributions or morphologies of plants within the clade. Herein, we introduce fossil material of Eucalyptus from the early Eocene (ca. 51.9 Ma) Laguna del Hunco paleoflora of Chubut Province, Argentina; specimens include multiple leaves, infructescences, and dispersed capsules, several flower buds, and a single flower. Morphological similarities that relate the fossils to extant eucalypts include leaf shape, venation, and epidermal oil glands; infructescence structure; valvate capsulate fruits; and operculate flower buds. The presence of a staminophore scar on the fruits links them to Eucalyptus, and the presence of a transverse scar on the flower buds indicates a relationship to Eucalyptus subgenus Symphyomyrtus. Phylogenetic analyses of morphological data alone and combined with aligned sequence data from a prior study including 16 extant eucalypts, one outgroup, and a terminal representing the fossils indicate that the fossils are nested within Eucalyptus. These are the only illustrated Eucalyptus fossils that are definitively Eocene in age, and the only conclusively identified extant or fossil eucalypts naturally occurring outside of Australasia and adjacent Mindanao. Thus, these fossils indicate that the evolution of the eucalypt group is not constrained to a single region. Moreover, they strengthen the taxonomic connections between the Laguna del Hunco paleoflora and extant subtropical and tropical Australasia, one of the three major ecologic-geographic elements of the Laguna del Hunco paleoflora. The age and affinities of the fossils also indicate that Eucalyptus subgenus Symphyomyrtus is older than previously supposed. Paleoecological data indicate that the

Oldest known Eucalyptus macrofossils are from South America.

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María A Gandolfo

Full Text Available The evolutionary history of Eucalyptus and the eucalypts, the larger clade of seven genera including Eucalyptus that today have a natural distribution almost exclusively in Australasia, is poorly documented from the fossil record. Little physical evidence exists bearing on the ancient geographical distributions or morphologies of plants within the clade. Herein, we introduce fossil material of Eucalyptus from the early Eocene (ca. 51.9 Ma Laguna del Hunco paleoflora of Chubut Province, Argentina; specimens include multiple leaves, infructescences, and dispersed capsules, several flower buds, and a single flower. Morphological similarities that relate the fossils to extant eucalypts include leaf shape, venation, and epidermal oil glands; infructescence structure; valvate capsulate fruits; and operculate flower buds. The presence of a staminophore scar on the fruits links them to Eucalyptus, and the presence of a transverse scar on the flower buds indicates a relationship to Eucalyptus subgenus Symphyomyrtus. Phylogenetic analyses of morphological data alone and combined with aligned sequence data from a prior study including 16 extant eucalypts, one outgroup, and a terminal representing the fossils indicate that the fossils are nested within Eucalyptus. These are the only illustrated Eucalyptus fossils that are definitively Eocene in age, and the only conclusively identified extant or fossil eucalypts naturally occurring outside of Australasia and adjacent Mindanao. Thus, these fossils indicate that the evolution of the eucalypt group is not constrained to a single region. Moreover, they strengthen the taxonomic connections between the Laguna del Hunco paleoflora and extant subtropical and tropical Australasia, one of the three major ecologic-geographic elements of the Laguna del Hunco paleoflora. The age and affinities of the fossils also indicate that Eucalyptus subgenus Symphyomyrtus is older than previously supposed. Paleoecological data

Microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

CSIR Research Space (South Africa)

Barros, E

2009-05-01

Full Text Available of Eucalyptus grandis planting stock that exhibit preferred wood qualities is thus a priority of the South African forestry industry. The researchers used microarray-based DNA-amplified fragment length polymorphism (AFLP) analysis in combination with expression...

Characterization of abiotic stress genes from different species of eucalyptus

International Nuclear Information System (INIS)

Naz, S.; Kausar, H.; Saleem, F.; Zafarullah, A.

2015-01-01

The stresses causing dehydration damage to the plant cell like cold, drought, and high salinity are the most frequent environmental stresses that influence plant growth, development and restraining productivity in cultivated areas world-wide. Many drought, salinity and cold inducible genes causing tolerance to environmental stresses in many plants include Dehydrin1 (DHN1), Dehydrin2 (DHN2), Dehydrin10 (DHN10), putative phosphate transporter (Ecpt2), choline monooxygenase (CMO) and DREB/CBF1c genes. Gene specific primer pairs were designed for each gene using DNAStar software. These genes were amplified from different species of eucalyptus such as Eucalyptus camaldulensis, E. globulus, E. tereticornis and E. gunii through PCR. Dehydrin2 gene of E. camaldulensis and dehydrin10 gene of E. globulus were cloned using the TA Cloning Kit with pCR 2.1 vector and sequenced. The Dehydrin genes sequences were submitted to GeneBank: Eucalyptus globulus dehydrin10 gene (Accession No. HG915712) and E. camaldulensis dehydrin 2 gene (Accession No. HG813113). The amino acid sequence of Dehydrin10 from E. globulus showed 97% homology to E. globulus DHN10 (JN052210) and Dehydrin2 from E. camaldulensis presented 94% homology to E. globulus DHN2 (JN052209). These genes can be employed in generating drought resistant crop plants. (author)

Monoterpene engineering in a woody plant Eucalyptus camaldulensis using a limonene synthase cDNA.

Science.gov (United States)

Ohara, Kazuaki; Matsunaga, Etsuko; Nanto, Kazuya; Yamamoto, Kyoko; Sasaki, Kanako; Ebinuma, Hiroyasu; Yazaki, Kazufumi

2010-01-01

Metabolic engineering aimed at monoterpene production has become an intensive research topic in recent years, although most studies have been limited to herbal plants including model plants such as Arabidopsis. The genus Eucalyptus includes commercially important woody plants in terms of essential oil production and the pulp industry. This study attempted to modify the production of monoterpenes, which are major components of Eucalyptus essential oil, by introducing two expression constructs containing Perilla frutescens limonene synthase (PFLS) cDNA, whose gene products were designed to be localized in either the plastid or cytosol, into Eucalyptus camaldulensis. The expression of the plastid-type and cytosol-type PFLS cDNA in transgenic E. camaldulensis was confirmed by real-time polymerase chain reaction (PCR). Gas chromatography with a flame ionization detector analyses of leaf extracts revealed that the plastidic and cytosolic expression of PFLS yielded 2.6- and 4.5-times more limonene than that accumulated in wild-type E. camaldulensis, respectively, while the ectopic expression of PFLS had only a small effect on the emission of limonene from the leaves of E. camaldulensis. Surprisingly, the high level of PFLS in Eucalyptus was accompanied by a synergistic increase in the production of 1,8-cineole and alpha-pinene, two major components of Eucalyptus monoterpenes. This genetic engineering of monoterpenes demonstrated a new potential for molecular breeding in woody plants.

Genetic dissection of growth, wood basic density and gene expression in interspecific backcrosses of Eucalyptus grandis and E. urophylla

Science.gov (United States)

2012-01-01

Background F1 hybrid clones of Eucalyptus grandis and E. urophylla are widely grown for pulp and paper production in tropical and subtropical regions. Volume growth and wood quality are priority objectives in Eucalyptus tree improvement. The molecular basis of quantitative variation and trait expression in eucalypt hybrids, however, remains largely unknown. The recent availability of a draft genome sequence (http://www.phytozome.net) and genome-wide genotyping platforms, combined with high levels of genetic variation and high linkage disequilibrium in hybrid crosses, greatly facilitate the detection of quantitative trait loci (QTLs) as well as underlying candidate genes for growth and wood property traits. In this study, we used Diversity Arrays Technology markers to assess the genetic architecture of volume growth (diameter at breast height, DBH) and wood basic density in four-year-old progeny of an interspecific backcross pedigree of E. grandis and E. urophylla. In addition, we used Illumina RNA-Seq expression profiling in the E. urophylla backcross family to identify cis- and trans-acting polymorphisms (eQTLs) affecting transcript abundance of genes underlying QTLs for wood basic density. Results A total of five QTLs for DBH and 12 for wood basic density were identified in the two backcross families. Individual QTLs for DBH and wood basic density explained 3.1 to 12.2% of phenotypic variation. Candidate genes underlying QTLs for wood basic density on linkage groups 8 and 9 were found to share trans-acting eQTLs located on linkage groups 4 and 10, which in turn coincided with QTLs for wood basic density suggesting that these QTLs represent segregating components of an underlying transcriptional network. Conclusion This is the first demonstration of the use of next-generation expression profiling to quantify transcript abundance in a segregating tree population and identify candidate genes potentially affecting wood property variation. The QTLs identified in this

The Eucalyptus grandis R2R3-MYB transcription factor family: evidence for woody growth-related evolution and function.

Science.gov (United States)

Soler, Marçal; Camargo, Eduardo Leal Oliveira; Carocha, Victor; Cassan-Wang, Hua; San Clemente, Hélène; Savelli, Bruno; Hefer, Charles A; Paiva, Jorge A Pinto; Myburg, Alexander A; Grima-Pettenati, Jacqueline

2015-06-01

The R2R3-MYB family, one of the largest transcription factor families in higher plants, controls a wide variety of plant-specific processes including, notably, phenylpropanoid metabolism and secondary cell wall formation. We performed a genome-wide analysis of this superfamily in Eucalyptus, one of the most planted hardwood trees world-wide. A total of 141 predicted R2R3-MYB sequences identified in the Eucalyptus grandis genome sequence were subjected to comparative phylogenetic analyses with Arabidopsis thaliana, Oryza sativa, Populus trichocarpa and Vitis vinifera. We analysed features such as gene structure, conserved motifs and genome location. Transcript abundance patterns were assessed by RNAseq and validated by high-throughput quantitative PCR. We found some R2R3-MYB subgroups with expanded membership in E. grandis, V. vinifera and P. trichocarpa, and others preferentially found in woody species, suggesting diversification of specific functions in woody plants. By contrast, subgroups containing key genes regulating lignin biosynthesis and secondary cell wall formation are more conserved across all of the species analysed. In Eucalyptus, R2R3-MYB tandem gene duplications seem to disproportionately affect woody-preferential and woody-expanded subgroups. Interestingly, some of the genes belonging to woody-preferential subgroups show higher expression in the cambial region, suggesting a putative role in the regulation of secondary growth. © 2014 The Authors New Phytologist © 2014 New Phytologist Trust.

Permeability measuremens of brazilian Eucalyptus

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Marcio Rogério da Silva

2010-09-01

Full Text Available The permeability of Brazilian Eucalyptus grandis and Eucalyptus citriodora wood was measured in a custom build gas analysis chamber in order to determine which species could be successfully treated with preservatives. Liquid permeability was tested using an emulsion of Neen oil and a control of distillated water. Air was used to test the gas phase permeability. For both Eucalyptus grandis and Eucalyptus citriodora, the longitudinal permeability of gas was shown to be about twice as great as the liquid phase permeability. No radial permeability was observed for either wood. The permeability of air and water through the sapwood of Eucalyptus grandis was greater than that through the sapwood of Eucalyptus citriodora. The permeability of neen oil preservative through the sapwood of Eucalyptus grandis was also greater than through the sapwood of E. Citradora, but the difference was not statistically significant. Scanning Electron Microscopy images showed that the distribution and obstruction in the vessels could be correlated with observed permeability properties. Irrespective of the causes of differences in permeability between the species, the fluid phase flux through the sapwood of both species was significant, indicating that both Eucalyptus grandis and Eucalyptus citriodora could be successfully treated with wood preservative.

Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome

Science.gov (United States)

Petroli, César D.; Sansaloni, Carolina P.; Carling, Jason; Steane, Dorothy A.; Vaillancourt, René E.; Myburg, Alexander A.; da Silva, Orzenil Bonfim; Pappas, Georgios Joannis; Kilian, Andrzej; Grattapaglia, Dario

2012-01-01

Diversity Arrays Technology (DArT) provides a robust, high throughput, cost-effective method to query thousands of sequence polymorphisms in a single assay. Despite the extensive use of this genotyping platform for numerous plant species, little is known regarding the sequence attributes and genome-wide distribution of DArT markers. We investigated the genomic properties of the 7,680 DArT marker probes of a Eucalyptus array, by sequencing them, constructing a high density linkage map and carrying out detailed physical mapping analyses to the Eucalyptus grandis reference genome. A consensus linkage map with 2,274 DArT markers anchored to 210 microsatellites and a framework map, with improved support for ordering, displayed extensive collinearity with the genome sequence. Only 1.4 Mbp of the 75 Mbp of still unplaced scaffold sequence was captured by 45 linkage mapped but physically unaligned markers to the 11 main Eucalyptus pseudochromosomes, providing compelling evidence for the quality and completeness of the current Eucalyptus genome assembly. A highly significant correspondence was found between the locations of DArT markers and predicted gene models, while most of the 89 DArT probes unaligned to the genome correspond to sequences likely absent in E. grandis, consistent with the pan-genomic feature of this multi-Eucalyptus species DArT array. These comprehensive linkage-to-physical mapping analyses provide novel data regarding the genomic attributes of DArT markers in plant genomes in general and for Eucalyptus in particular. DArT markers preferentially target the gene space and display a largely homogeneous distribution across the genome, thereby providing superb coverage for mapping and genome-wide applications in breeding and diversity studies. Data reported on these ubiquitous properties of DArT markers will be particularly valuable to researchers working on less-studied crop species who already count on DArT genotyping arrays but for which no reference

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

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César D Petroli

Full Text Available Diversity Arrays Technology (DArT provides a robust, high throughput, cost-effective method to query thousands of sequence polymorphisms in a single assay. Despite the extensive use of this genotyping platform for numerous plant species, little is known regarding the sequence attributes and genome-wide distribution of DArT markers. We investigated the genomic properties of the 7,680 DArT marker probes of a Eucalyptus array, by sequencing them, constructing a high density linkage map and carrying out detailed physical mapping analyses to the Eucalyptus grandis reference genome. A consensus linkage map with 2,274 DArT markers anchored to 210 microsatellites and a framework map, with improved support for ordering, displayed extensive collinearity with the genome sequence. Only 1.4 Mbp of the 75 Mbp of still unplaced scaffold sequence was captured by 45 linkage mapped but physically unaligned markers to the 11 main Eucalyptus pseudochromosomes, providing compelling evidence for the quality and completeness of the current Eucalyptus genome assembly. A highly significant correspondence was found between the locations of DArT markers and predicted gene models, while most of the 89 DArT probes unaligned to the genome correspond to sequences likely absent in E. grandis, consistent with the pan-genomic feature of this multi-Eucalyptus species DArT array. These comprehensive linkage-to-physical mapping analyses provide novel data regarding the genomic attributes of DArT markers in plant genomes in general and for Eucalyptus in particular. DArT markers preferentially target the gene space and display a largely homogeneous distribution across the genome, thereby providing superb coverage for mapping and genome-wide applications in breeding and diversity studies. Data reported on these ubiquitous properties of DArT markers will be particularly valuable to researchers working on less-studied crop species who already count on DArT genotyping arrays but for

Water relations of Eucalyptus nitens x Eucalyptus grandis : is there ...

African Journals Online (AJOL)

Water relations of Eucalyptus nitens x Eucalyptus grandis : is there interclonal variation in response to experimentally imposed water stress? ... Southern Forests: a Journal of Forest Science ... However, water stress reduced shoot hydraulic conductance and stem hydraulic conductivity with significant interclonal effects.

Uji Infeksi Mycosphaerella spp Terhadap Bibit Eucalyptus spp

OpenAIRE

Lidya Morita Sondang

2009-01-01

Tujuan penelitian ini adalah untuk mengetahui tingkat ketahanan 2 klon Eucalyptus spp yaitu Eucalyptus grandis x Eucalyptus pellita dan Eucalyptus grandis x Eucalyptus urophylla terhadap Mycosphaerella spp serta mengetahui virulensi Mycospaherella spp pada 2 kelas umur (2 dan 3 bulan) pada tanaman Eucalyptus spp. Penelitian ini dilaksanakan dengan pengambilan sampel bibit tanaman Eucalyptus grandis x Eucalyptus pellita dan Eucalyptus grandis x Eucalyptus urophylla dari pembibitan PT.Toba Pulp...

Eucalyptus oil poisoning.

OpenAIRE

Patel, S; Wiggins, J

1980-01-01

Accidental ingestion of eucalyptus oil by a 3-year-old boy caused profound central nervous system depression within 30 minutes, but he recovered rapidly after gastric lavage. The extreme toxicity of eucalyptus oil is emphasised.

Genome-wide analysis of EgEVE_1, a transcriptionally active endogenous viral element associated to small RNAs in Eucalyptus genomes

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Helena Sanches Marcon

2017-02-01

Full Text Available Abstract Endogenous viral elements (EVEs are the result of heritable horizontal gene transfer from viruses to hosts. In the last years, several EVE integration events were reported in plants by the exponential availability of sequenced genomes. Eucalyptus grandis is a forest tree species with a sequenced genome that is poorly studied in terms of evolution and mobile genetic elements composition. Here we report the characterization of E. grandis endogenous viral element 1 (EgEVE_1, a transcriptionally active EVE with a size of 5,664 bp. Phylogenetic analysis and genomic distribution demonstrated that EgEVE_1 is a newly described member of the Caulimoviridae family, distinct from the recently characterized plant Florendoviruses. Genomic distribution of EgEVE_1 and Florendovirus is also distinct. EgEVE_1 qPCR quantification in Eucalyptus urophylla suggests that this genome has more EgEVE_1 copies than E. grandis. EgEVE_1 transcriptional activity was demonstrated by RT-qPCR in five Eucalyptus species and one intrageneric hybrid. We also identified that Eucalyptus EVEs can generate small RNAs (sRNAs,that might be involved in de novo DNA methylation and virus resistance. Our data suggest that EVE families in Eucalyptus have distinct properties, and we provide the first comparative analysis of EVEs in Eucalyptus genomes.

Propriedades de chapas tipo OSB, fabricadas com partículas acetiladas de madeiras de Eucalyptus grandis, Eucalyptus urophylla, Eucalyptus cloeziana e Pinus elliottii Properties of OSB manufactured with wood strands of Eucalyptus grandis, Eucalyptus urophylla, Eucalyptus cloeziana and Pinus elliottii

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Carla Priscilla Távora Cabral

2006-08-01

Full Text Available Este trabalho teve como objetivo avaliar as propriedades de chapas de 0riented Strand Board (OSB, fabricadas com flocos de madeira de Eucalyptus grandis, Eucalyptus urophylla e Eucalyptus cloeziana e oriundas dos Municípios de Ponte Alta e Três Marias, no Estado de Minas Gerais. As massas específicas básicas das três espécies de eucaliptos das duas regiões foram, respectivamente: Ponte Alta (0,55; 0,61; e 0,70 g/cm³ e Três Márias (0,56; 0,58; e 0,69 g/cm³. Quando necessário, para manter as massas específicas das chapas próximas de 0,70 g/cm³ foram acrescentadas às partículas de madeira de eucalipto partículas de madeira de Pinus elliottii, oriundo da cidade de Viçosa, com massa específica de 0,45 g/cm³. Os flocos foram gerados nas dimensões médias de 90,00 x 20,00 x 0,46 mm. O adesivo utilizado foi o fenol-formaldeído, na proporção de 8% de sólidos, em relação à massa seca de partículas. Parte dos flocos de eucaliptos foram acetilados. As chapas foram prensadas à temperatura de 170 °C e 32 kgf/cm² de pressão. As propriedades das chapas foram determinadas segundo as normas da ABNT NBR 14810-3 (2002 e ASTM-D 1037 (1991. Os resultados foram comparados utilizando-se as normas ANSI/A - 208.1 (1993 e CSA 0437-93 (1993. As chapas contendo partículas acetiladas foram mais estáveis e adsorveram menos umidade. Na tração perpendicular, observou-se que as chapas contendo 100% de flocos acetilados apresentaram resultados inferiores ao estipulado pela norma CSA O437-0/93 (1993. A resistência ao arrancamento de parafuso, módulo de ruptura (paralelo e perpendicular e compressão longitudinal (perpendicular, foi reduzida pela acetilação nas chapas contendo 100% dos flocos acetilados. As espécies que apresentaram, numericamente, as maiores médias para resistência mecânica foram: Eucalyptus grandis não acetilado (dureza Janka e Eucalyptus cloeziana misturado com Pinus sp (módulo de ruptura. Somente a resistência �

Essential oil composition of Eucalyptus microtheca and Eucalyptus viminalis

OpenAIRE

Maghsoodlou, Malek Taher; Kazemipoor, Nasrin; Valizadeh, Jafar; Falak Nezhad Seifi, Mohsen; Rahneshan, Nahid

2015-01-01

Objective: Eucalyptus (Fam. Myrtaceae) is a medicinal plant and various Eucalyptus species possess potent pharmacological actions against diabetes, hepatotoxicity, and inflammation. This study aims to investigate essential oil composition from leaves and flowers of E. microtheca and E. viminalis leaves growing in the Southeast of Iran. Materials and Methods: The aerial parts of these plants were collected from Zahedan, Sistan and Baluchestan province, Iran in 2013. After drying the plant mate...

Multigene families encode the major enzymes of antioxidant metabolism in Eucalyptus grandis L

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Felipe Karam Teixeira

2005-01-01

Full Text Available Antioxidant metabolism protects cells from oxidative damage caused by reactive oxygen species (ROS. In plants, several enzymes act jointly to maintain redox homeostasis. Moreover, isoform diversity contributes to the fine tuning necessary for plant responses to both exogenous and endogenous signals influencing antioxidant metabolism. This study aimed to provide a comprehensive view of the major classes of antioxidant enzymes in the woody species Eucalyptus grandis. A careful survey of the FORESTs data bank revealed 36 clusters as encoding antioxidant enzymes: six clusters encoding ascorbate peroxidase (APx isozymes, three catalase (CAT proteins, three dehydroascorbate reductase (DHAR, two glutathione reductase (GR isozymes, four monodehydroascorbate reductase (MDHAR, six phospholipid hydroperoxide glutathione peroxidases (PhGPx, and 12 encoding superoxide dismutases (SOD isozymes. Phylogenetic analysis demonstrated that all clusters (identified herein grouped with previously characterized antioxidant enzymes, corroborating the analysis performed. With respect to enzymes involved in the ascorbate-glutathione cycle, both cytosolic and chloroplastic isoforms were putatively identified. These sequences were widely distributed among the different ESTs libraries indicating a broad gene expression pattern. Overall, the data indicate the importance of antioxidant metabolism in eucalyptus.

The tonoplast intrinsic aquaporin (TIP) subfamily of Eucalyptus grandis: Characterization of EgTIP2, a root-specific and osmotic stress-responsive gene.

Science.gov (United States)

Rodrigues, Marcela I; Bravo, Juliana P; Sassaki, Flávio T; Severino, Fábio E; Maia, Ivan G

2013-12-01

Aquaporins have important roles in various physiological processes in plants, including growth, development and adaptation to stress. In this study, a gene encoding a root-specific tonoplast intrinsic aquaporin (TIP) from Eucalyptus grandis (named EgTIP2) was investigated. The root-specific expression of EgTIP2 was validated over a panel of five eucalyptus organ/tissues. In eucalyptus roots, EgTIP2 expression was significantly induced by osmotic stress imposed by PEG treatment. Histochemical analysis of transgenic tobacco lines (Nicotiana tabacum SR1) harboring an EgTIP2 promoter:GUS reporter cassette revealed major GUS staining in the vasculature and in root tips. Consistent with its osmotic-stress inducible expression in eucalyptus, EgTIP2 promoter activity was up-regulated by mannitol treatment, but was down-regulated by abscisic acid. Taken together, these results suggest that EgTIP2 might be involved in eucalyptus response to drought. Additional searches in the eucalyptus genome revealed the presence of four additional putative TIP coding genes, which could be individually assigned to the classical TIP1-5 groups. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Classification of Small-Scale Eucalyptus Plantations Based on NDVI Time Series Obtained from Multiple High-Resolution Datasets

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Hailang Qiao

2016-02-01

Full Text Available Eucalyptus, a short-rotation plantation, has been expanding rapidly in southeast China in recent years owing to its short growth cycle and high yield of wood. Effective identification of eucalyptus, therefore, is important for monitoring land use changes and investigating environmental quality. For this article, we used remote sensing images over 15 years (one per year with a 30-m spatial resolution, including Landsat 5 thematic mapper images, Landsat 7-enhanced thematic mapper images, and HJ 1A/1B images. These data were used to construct a 15-year Normalized Difference Vegetation Index (NDVI time series for several cities in Guangdong Province, China. Eucalyptus reference NDVI time series sub-sequences were acquired, including one-year-long and two-year-long growing periods, using invested eucalyptus samples in the study region. In order to compensate for the discontinuity of the NDVI time series that is a consequence of the relatively coarse temporal resolution, we developed an inverted triangle area methodology. Using this methodology, the images were classified on the basis of the matching degree of the NDVI time series and two reference NDVI time series sub-sequences during the growing period of the eucalyptus rotations. Three additional methodologies (Bounding Envelope, City Block, and Standardized Euclidian Distance were also tested and used as a comparison group. Threshold coefficients for the algorithms were adjusted using commission–omission error criteria. The results show that the triangle area methodology out-performed the other methodologies in classifying eucalyptus plantations. Threshold coefficients and an optimal discriminant function were determined using a mosaic photograph that had been taken by an unmanned aerial vehicle platform. Good stability was found as we performed further validation using multiple-year data from the high-resolution Gaofen Satellite 1 (GF-1 observations of larger regions. Eucalyptus planting dates

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

Science.gov (United States)

2011-01-01

Background In a context of climate change, phenotypic plasticity provides long-lived species, such as trees, with the means to adapt to environmental variations occurring within a single generation. In eucalyptus plantations, water availability is a key factor limiting productivity. However, the molecular mechanisms underlying the adaptation of eucalyptus to water shortage remain unclear. In this study, we compared the molecular responses of two commercial eucalyptus hybrids during the dry season. Both hybrids differ in productivity when grown under water deficit. Results Pyrosequencing of RNA extracted from shoot apices provided extensive transcriptome coverage - a catalog of 129,993 unigenes (49,748 contigs and 80,245 singletons) was generated from 398 million base pairs, or 1.14 million reads. The pyrosequencing data enriched considerably existing Eucalyptus EST collections, adding 36,985 unigenes not previously represented. Digital analysis of read abundance in 14,460 contigs identified 1,280 that were differentially expressed between the two genotypes, 155 contigs showing differential expression between treatments (irrigated vs. non irrigated conditions during the dry season), and 274 contigs with significant genotype-by-treatment interaction. The more productive genotype displayed a larger set of genes responding to water stress. Moreover, stress signal transduction seemed to involve different pathways in the two genotypes, suggesting that water shortage induces distinct cellular stress cascades. Similarly, the response of functional proteins also varied widely between genotypes: the most productive genotype decreased expression of genes related to photosystem, transport and secondary metabolism, whereas genes related to primary metabolism and cell organisation were over-expressed. Conclusions For the most productive genotype, the ability to express a broader set of genes in response to water availability appears to be a key characteristic in the maintenance

cis sequence effects on gene expression

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Jacobs Kevin

2007-08-01

Full Text Available Abstract Background Sequence and transcriptional variability within and between individuals are typically studied independently. The joint analysis of sequence and gene expression variation (genetical genomics provides insight into the role of linked sequence variation in the regulation of gene expression. We investigated the role of sequence variation in cis on gene expression (cis sequence effects in a group of genes commonly studied in cancer research in lymphoblastoid cell lines. We estimated the proportion of genes exhibiting cis sequence effects and the proportion of gene expression variation explained by cis sequence effects using three different analytical approaches, and compared our results to the literature. Results We generated gene expression profiling data at N = 697 candidate genes from N = 30 lymphoblastoid cell lines for this study and used available candidate gene resequencing data at N = 552 candidate genes to identify N = 30 candidate genes with sufficient variance in both datasets for the investigation of cis sequence effects. We used two additive models and the haplotype phylogeny scanning approach of Templeton (Tree Scanning to evaluate association between individual SNPs, all SNPs at a gene, and diplotypes, with log-transformed gene expression. SNPs and diplotypes at eight candidate genes exhibited statistically significant (p cis sequence effects in our study, respectively. Conclusion Based on analysis of our results and the extant literature, one in four genes exhibits significant cis sequence effects, and for these genes, about 30% of gene expression variation is accounted for by cis sequence variation. Despite diverse experimental approaches, the presence or absence of significant cis sequence effects is largely supported by previously published studies.

Eucalyptus globulus extract protects against UVB-induced photoaging by enhancing collagen synthesis via regulation of TGF-β/Smad signals and attenuation of AP-1.

Science.gov (United States)

Park, Bom; Hwang, Eunson; Seo, Seul A; Cho, Jin-Gyeong; Yang, Jung-Eun; Yi, Tae-Hoo

2018-01-01

UV irradiation triggers the overproduction of matrix metalloproteinases and collagen degradation, which in turn causes increased pigmentation, dryness, and deep wrinkling of the skin. These chronic symptoms are collectively referred to as photoaging. Eucalyptus globulus is an evergreen tree that is widely used in cosmetics because of its antimicrobial activity. In this study, we investigated the protective effect of 50% ethanol extracts of Eucalyptus globulus on UV-induced photoaging in vitro and in vivo. Normal human dermal fibroblasts were treated with Eucalyptus globulus at concentrations ranging from 1 to 100 μg/mL after UVB or non-UVB irradiation. We found that Eucalyptus globulus suppressed the expression of MMPs and IL-6, but increased the expression of TGF-β1 and procollagen type 1. In addition, Eucalyptus globulus inhibited activation of the AP-1 transcription factor, an inducer of MMPs. Eucalyptus globulus was also found to regulate TGF-β/Smad signaling by reversing the activity of negative Smad regulators. Lastly, in vivo studies showed that topical application of Eucalyptus globulus on UVB-irradiated hairless mice reduced wrinkle formation and dryness by down-regulating MMP-1 and up-regulating expression of elastin, TGF-β1, and procollagen type 1. Taken together, these data suggest that Eucalyptus globulus may be a useful agent in cosmetic products. Copyright © 2017 Elsevier Inc. All rights reserved.

Effects of autohydrolysis of Eucalyptus urograndis and Eucalyptus grandis on influence of chemical components and crystallinity index.

Science.gov (United States)

da Silva Morais, Alaine Patrícia; Sansígolo, Cláudio Angeli; de Oliveira Neto, Mario

2016-08-01

Samples of Eucalyptus urograndis and Eucalyptus grandis sawdust were autohydrolyzed in aqueous conditions to reach temperatures in the range 110-190°C and reaction times of 0-150min in a minireactor. In each minireactor were used a liquor:wood ratio (10:1 L:kg dry wood), in order to assess the effects of the autohydrolysis severity and the crystalline properties of cellulose. The content of extractives, lignin, holocellulose, cellulose, hemicelluloses and crystallinity index obtained from the solid fraction after autohydrolysis of sawdust were determined. This study demonstrated that the hemicelluloses were extensively removed at 170 and 190°C, whereas cellulose was partly degraded to Eucalyptus urograndis and Eucalyptus grandis sawdust. The lignin content decreased, while the extractives content increased. It was defined that during autohydrolysis, had a slight decreased on crystalline structure of cellulose of Eucalyptus urogandis and Eucalyptus grandis. Copyright © 2016 Elsevier Ltd. All rights reserved.

Transcriptome and proteome analysis of Eucalyptus infected with Calonectria pseudoreteaudii.

Science.gov (United States)

Chen, Quanzhu; Guo, Wenshuo; Feng, Lizhen; Ye, Xiaozhen; Xie, Wanfeng; Huang, Xiuping; Liu, Jinyan

2015-02-06

Cylindrocladium leaf blight is one of the most severe diseases in Eucalyptus plantations and nurseries. There are Eucalyptus cultivars with resistance to the disease. However, little is known about the defense mechanism of resistant cultivars. Here, we investigated the transcriptome and proteome of Eucalyptus leaves (E. urophylla×E. tereticornis M1), infected or not with Calonectria pseudoreteaudii. A total of 8585 differentially expressed genes (|log2 ratio| ≥1, FDR ≤0.001) at 12 and 24hours post-inoculation were detected using RNA-seq. Transcriptional changes for five genes were further confirmed by qRT-PCR. A total of 3680 proteins at the two time points were identified using iTRAQ technique.The combined transcriptome and proteome analysis revealed that the shikimate/phenylpropanoid pathway, terpenoid biosynthesis, signalling pathway (jasmonic acid and sugar) were activated. The data also showed that some proteins (WRKY33 and PR proteins) which have been reported to involve in plant defense response were up-regulated. However, photosynthesis, nucleic acid metabolism and protein metabolism were impaired by the infection of C. pseudoreteaudii. This work will facilitate the identification of defense related genes and provide insights into Eucalyptus defense responses to Cylindrocladium leaf blight. In this study, a total of 130 proteins and genes involved in the shikimate/phenylpropanoid pathway, terpenoid biosynthesis, signalling pathway, cell transport, carbohydrate and energy metabolism, nucleic acid metabolism and protein metabolism in Eucalyptus leaves after infected with C. pseudoreteaudii were identified. This is the first report of a comprehensive transcriptomic and proteomic analysis of Eucalyptus in response to Calonectria sp. Copyright © 2014 Elsevier B.V. All rights reserved.

Effects of Treatment Materials on the Physical Properties of Eucalyptus (Eucalyptus camaldulensis Dehn. Wood

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Selahattin Bardak

2011-04-01

Full Text Available This study was designed to determine effects on retention and shrink levels of Eucalyptus (Eucalyptus camaldulensis Dehn. which treated with some commercial preservative types, borates, polyethylene glycol, and water repellents. In this study, four type impregnation chemicals were chosen: 1. Commercial preservative types, [Ammonium sulphate, Vacsol-WR WR and Immersol-WR (WR], 2. Borates chemicals, [Boric acid, Borax, Boric acid+ Borax] 3. Polyethylene glycol such as Polyethylene glycol (PEG-400 4. Water repellents [Styrene, Methylmetacrylate.]. As a result, retention % and shrink levels of Eucalyptus wood was lower treated with commercial preservative types and borates preservatives compare to other treatment chemicals. However, retention % levels of Eucalyptus wood treated with WR chemicals were highly significant levels. According to their leachability period although PEG 400 showed antishrink effectiveness other treatments didnt showed antishrink efficiency.

Uncovering the defence responses of Eucalyptus to pests and pathogens in the genomics age.

Science.gov (United States)

Naidoo, Sanushka; Külheim, Carsten; Zwart, Lizahn; Mangwanda, Ronishree; Oates, Caryn N; Visser, Erik A; Wilken, Febé E; Mamni, Thandekile B; Myburg, Alexander A

2014-09-01

Long-lived tree species are subject to attack by various pests and pathogens during their lifetime. This problem is exacerbated by climate change, which may increase the host range for pathogens and extend the period of infestation by pests. Plant defences may involve preformed barriers or induced resistance mechanisms based on recognition of the invader, complex signalling cascades, hormone signalling, activation of transcription factors and production of pathogenesis-related (PR) proteins with direct antimicrobial or anti-insect activity. Trees have evolved some unique defence mechanisms compared with well-studied model plants, which are mostly herbaceous annuals. The genome sequence of Eucalyptus grandis W. Hill ex Maiden has recently become available and provides a resource to extend our understanding of defence in large woody perennials. This review synthesizes existing knowledge of defence mechanisms in model plants and tree species and features mechanisms that may be important for defence in Eucalyptus, such as anatomical variants and the role of chemicals and proteins. Based on the E. grandis genome sequence, we have identified putative PR proteins based on sequence identity to the previously described plant PR proteins. Putative orthologues for PR-1, PR-2, PR-4, PR-5, PR-6, PR-7, PR-8, PR-9, PR-10, PR-12, PR-14, PR-15 and PR-17 have been identified and compared with their orthologues in Populus trichocarpa Torr. & A. Gray ex Hook and Arabidopsis thaliana (L.) Heynh. The survey of PR genes in Eucalyptus provides a first step in identifying defence gene targets that may be employed for protection of the species in future. Genomic resources available for Eucalyptus are discussed and approaches for improving resistance in these hardwood trees, earmarked as a bioenergy source in future, are considered. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Novel expressed sequence tag- simple sequence repeats (EST ...

African Journals Online (AJOL)

Using different bioinformatic criteria, the SUCEST database was used to mine for simple sequence repeat (SSR) markers. Among 42,189 clusters, 1,425 expressed sequence tag- simple sequence repeats (EST-SSRs) were identified in silico. Trinucleotide repeats were the most abundant SSRs detected. Of 212 primer pairs ...

COMBUSTION PROPERTIES OF EUCALYPTUS WOOD

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Yalçın ÖRS

1999-03-01

Full Text Available In this study, the combustion properties of some impregnation materials (abiotic and biotic factors used for eucalyptus wood in interior or exterior environments were investigated. The experimental samples were prepared from Eucalyptus wood based on ASTM-D-1413-76 Tanalith-CBC, boric acid, borax, vacsol-WR, immersol-WR, polyethylen glycole-400 and ammonium sulphate were used as an impregnation material. The results indicated that, vacuum treatment on Eucalyptus gave the lowest retention value of salts. Compounds containing boron+salt increased fire resistance however water repellents decreased the wood flammability.

Amenability of Acacia and Eucalyptus Hardwood Pulps to Elemental Chlorine-Free Bleaching: Application and Efficacy of Microbial Xylanase

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Avdhesh Kumar Gangwar

2015-10-01

Full Text Available This study outlines the results of a biobleaching study of acacia (A. mangium and eucalyptus (E. globulus hardwood kraft pulps with commercial xylanase (Optimase CX 72 L. The comparative study was carried out using an elemental chlorine-free (ECF bleaching sequence (D0EPD1D2 after the enzyme (X stage. The enzyme treatment resulted in improved optical properties with a reduction in bleach chemical consumption. At an equivalent bleach chemical consumption, a brightness gain of 2.1 and 1.7 units and a whiteness gain of 2.7 and 2.3 units were observed with xylanase treatment in acacia and eucalyptus pulps, respectively. In ECF bleaching using the D0EPD1D2 sequence, a final brightness was achieved to the extent of 90% ISO and 89% ISO for acacia and eucalyptus, respectively, at an equivalent charge of bleach chemicals. The post-color (PC number was also reduced by up to 45% for both hardwood pulps compared with the control. The bleachability of acacia was observed to be significantly higher than that of eucalyptus. In addition, a 17.0% and 23.0% reduction in chlorine dioxide and sodium hydroxide, respectively, were obtained for both hardwood pulps after xylanase pre-bleaching, thus indicating an environmentally friendly approach to the process.

Intercropped silviculture systems, a key to achieving soil fungal community management in eucalyptus plantations.

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Caio T C C Rachid

Full Text Available Fungi are ubiquitous and important contributors to soil nutrient cycling, playing a vital role in C, N and P turnover, with many fungi having direct beneficial relationships with plants. However, the factors that modulate the soil fungal community are poorly understood. We studied the degree to which the composition of tree species affected the soil fungal community structure and diversity by pyrosequencing the 28S rRNA gene in soil DNA. We were also interested in whether intercropping (mixed plantation of two plant species could be used to select fungal species. More than 50,000 high quality sequences were analyzed from three treatments: monoculture of Eucalyptus; monoculture of Acacia mangium; and a mixed plantation with both species sampled 2 and 3 years after planting. We found that the plant type had a major effect on the soil fungal community structure, with 75% of the sequences from the Eucalyptus soil belonging to Basidiomycota and 19% to Ascomycota, and the Acacia soil having a sequence distribution of 28% and 62%, respectively. The intercropping of Acacia mangium in a Eucalyptus plantation significantly increased the number of fungal genera and the diversity indices and introduced or increased the frequency of several genera that were not found in the monoculture cultivation samples. Our results suggest that management of soil fungi is possible by manipulating the composition of the plant community, and intercropped systems can be a means to achieve that.

Intercropped Silviculture Systems, a Key to Achieving Soil Fungal Community Management in Eucalyptus Plantations

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Rachid, Caio T. C. C.; Balieiro, Fabiano C.; Fonseca, Eduardo S.; Peixoto, Raquel Silva; Chaer, Guilherme M.; Tiedje, James M.; Rosado, Alexandre S.

2015-01-01

Fungi are ubiquitous and important contributors to soil nutrient cycling, playing a vital role in C, N and P turnover, with many fungi having direct beneficial relationships with plants. However, the factors that modulate the soil fungal community are poorly understood. We studied the degree to which the composition of tree species affected the soil fungal community structure and diversity by pyrosequencing the 28S rRNA gene in soil DNA. We were also interested in whether intercropping (mixed plantation of two plant species) could be used to select fungal species. More than 50,000 high quality sequences were analyzed from three treatments: monoculture of Eucalyptus; monoculture of Acacia mangium; and a mixed plantation with both species sampled 2 and 3 years after planting. We found that the plant type had a major effect on the soil fungal community structure, with 75% of the sequences from the Eucalyptus soil belonging to Basidiomycota and 19% to Ascomycota, and the Acacia soil having a sequence distribution of 28% and 62%, respectively. The intercropping of Acacia mangium in a Eucalyptus plantation significantly increased the number of fungal genera and the diversity indices and introduced or increased the frequency of several genera that were not found in the monoculture cultivation samples. Our results suggest that management of soil fungi is possible by manipulating the composition of the plant community, and intercropped systems can be a means to achieve that. PMID:25706388

Intercropped silviculture systems, a key to achieving soil fungal community management in eucalyptus plantations.

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Rachid, Caio T C C; Balieiro, Fabiano C; Fonseca, Eduardo S; Peixoto, Raquel Silva; Chaer, Guilherme M; Tiedje, James M; Rosado, Alexandre S

2015-01-01

Fungi are ubiquitous and important contributors to soil nutrient cycling, playing a vital role in C, N and P turnover, with many fungi having direct beneficial relationships with plants. However, the factors that modulate the soil fungal community are poorly understood. We studied the degree to which the composition of tree species affected the soil fungal community structure and diversity by pyrosequencing the 28S rRNA gene in soil DNA. We were also interested in whether intercropping (mixed plantation of two plant species) could be used to select fungal species. More than 50,000 high quality sequences were analyzed from three treatments: monoculture of Eucalyptus; monoculture of Acacia mangium; and a mixed plantation with both species sampled 2 and 3 years after planting. We found that the plant type had a major effect on the soil fungal community structure, with 75% of the sequences from the Eucalyptus soil belonging to Basidiomycota and 19% to Ascomycota, and the Acacia soil having a sequence distribution of 28% and 62%, respectively. The intercropping of Acacia mangium in a Eucalyptus plantation significantly increased the number of fungal genera and the diversity indices and introduced or increased the frequency of several genera that were not found in the monoculture cultivation samples. Our results suggest that management of soil fungi is possible by manipulating the composition of the plant community, and intercropped systems can be a means to achieve that.

QUALIDADE DA CELULOSE KRAFT-ANTRAQUINONA DE Eucalyptus dunnii PLANTADO EM CINCO ESPAÇAMENTOS EM RELAÇÃO AO Eucalyptus grandis E Eucalyptus saligna

OpenAIRE

Maria Cladis Mezzomo da Silva; Edvins Ratnieks; Teotônio Francisco de Assis; Celso Edmundo B. Foelkel; Jorge Vieira Gonzaga; Giovanni Willer Ferreira

1997-01-01

Este trabalho analisou o efeito de cinco espaçamentos de Eucalyptus dunnii (3 m x 1 m; 3 m x 1,5 m; 3 m x 2 m; 3 m x 3 m; 3 m x 4 m), para produção de celulose kraft-antraquinona, comparados com Eucalyptus grandis e Eucalyptus saligna (ambos no espaçamento 3 m x 2 m). Avaliaram-se a densidade básica e composição química da madeira original, analisando-se extrativos em diclorometano, pentosanas, lignina, solubilidade em NaOH8% e cinzas. Os cavacos foram submetidos a cozimento kraft-antraquinon...

Wood Permeability in Eucalyptus grandis and Eucalyptus dunnii

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Raphael Nogueira Rezende

2017-12-01

Full Text Available ABSTRACT The objective of this study was to evaluate the flow of air and water in Eucalyptus grandis and Eucalyptus dunnii wood. Wood was collected from four trees aged 37 years in an experimental plantation of the Federal University of Lavras, Brazil. Planks were cut off the basal logs to produce specimens for air and water permeability testing. Results indicated that the longitudinal permeability to air and water of E. grandis wood were, on average, 5% and 10% higher, respectively, than that of E. dunnii wood. E. grandis and E. dunnii wood showed neither air nor water flow in the test for permeability transversal to the fibers, and longitudinal permeability to air exceeded that to water by approximately 50 fold in both species.

Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium

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de Andrade, Pedro Avelino Maia; Bini, Daniel; Durrer, Ademir; Robin, Agnès; Bouillet, Jean Pierre; Andreote, Fernando Dini; Cardoso, Elke Jurandy Bran Nogueira

2017-01-01

Our knowledge of the rhizosphere bacterial communities in deep soils and the role of Eucalyptus and Acacia on the structure of these communities remains very limited. In this study, we targeted the bacterial community along a depth profile (0 to 800 cm) and compared community structure in monospecific or mixed plantations of Acacia mangium and Eucalyptus grandis. We applied quantitative PCR (qPCR) and sequence the V6 region of the 16S rRNA gene to characterize composition of bacterial communities. We identified a decrease in bacterial abundance with soil depth, and differences in community patterns between monospecific and mixed cultivations. Sequence analysis indicated a prevalent effect of soil depth on bacterial communities in the mixed plant cultivation system, and a remarkable differentiation of bacterial communities in areas solely cultivated with Eucalyptus. The groups most influenced by soil depth were Proteobacteria and Acidobacteria (more frequent in samples between 0 and 300 cm). The predominant bacterial groups differentially displayed in the monospecific stands of Eucalyptus were Firmicutes and Proteobacteria. Our results suggest that the addition of an N2-fixing tree in a monospecific cultivation system modulates bacterial community composition even at a great depth. We conclude that co-cultivation systems may represent a key strategy to improve soil resources and to establish more sustainable cultivation of Eucalyptus in Brazil. PMID:28686690

Marker-assisted selection in Eucalyptus

International Nuclear Information System (INIS)

Grattapaglia, D.

2007-01-01

Planted Eucalyptus occupies globally more than 18 million hectares and has become the most widely planted hardwood tree in the world, supplying high-quality woody biomass for several industrial applications. In this chapter an overview is presented on the status and perspectives of marker-assisted selection (MAS) in species of Eucalyptus. After an introduction to the main features of modern eucalypt breeding and clonal forestry, some applications of molecular markers in support to operational breeding are presented. By reviewing the status of quantitative trait locus (QTL) mapping in Eucalyptus, the challenges and some realistic prospects for the application of MAS to improve relevant traits are outlined. With the expected availability of more powerful genomic tools, including a draft of the Eucalyptus genome, the main challenges in implementing MAS will be in phenotyping trees accurately, analysing the overwhelming amount of genomic data available and translating this into truly useful molecular tools for breeding. (author)

Early selection of Eucalyptus clones in retrospective nursery test ...

African Journals Online (AJOL)

Within the framework of the eucalyptus breeding programme in the Congo, two retrospective tests were conducted using mature clones in the field and young cuttings under nursery conditions with two hybrids: 13 clones of Eucalyptus tereticornis* Eucalyptus grandis for the test TC 82-1B and 17 clones of Eucalyptus ...

Effects of Allelochemicals of Some Eucalyptus Species on ...

African Journals Online (AJOL)

A laboratory experiment was conducted to assess the effects of allelochemicals of Eucalyptus camaldulensis, Eucalyptus citriodora and Eucalyptus globules on germination and root elongation using leguminous crop ground nut (Arachis hypogea) as bioassay material. The experiments were conducted in sterilized ...

Botanical, Phytochemical, and Anticancer Properties of the Eucalyptus Species.

Science.gov (United States)

Vuong, Quan V; Chalmers, Anita C; Jyoti Bhuyan, Deep; Bowyer, Michael C; Scarlett, Christopher J

2015-06-01

The genus Eucalyptus (Myrtaceae) is mainly native to Australia; however, some species are now distributed globally. Eucalyptus has been used in indigenous Australian medicines for the treatment of a range of aliments including colds, flu, fever, muscular aches, sores, internal pains, and inflammation. Eucalyptus oils containing volatile compounds have been widely used in the pharmaceutical and cosmetics industries for a multitude of purposes. In addition, Eucalyptus extracts containing nonvolatile compounds are also an important source of key bioactive compounds, and several studies have linked Eucalyptus extracts with anticancer properties. With the increasing research interest in Eucalyptus and its health properties, this review briefly outlines the botanical features of Eucalyptus, discusses its traditional use as medicine, and comprehensively reviews its phytochemical and anticancer properties and, finally, proposes trends for future studies. Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zürich.

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

Science.gov (United States)

2011-01-01

Background High-throughput SNP genotyping has become an essential requirement for molecular breeding and population genomics studies in plant species. Large scale SNP developments have been reported for several mainstream crops. A growing interest now exists to expand the speed and resolution of genetic analysis to outbred species with highly heterozygous genomes. When nucleotide diversity is high, a refined diagnosis of the target SNP sequence context is needed to convert queried SNPs into high-quality genotypes using the Golden Gate Genotyping Technology (GGGT). This issue becomes exacerbated when attempting to transfer SNPs across species, a scarcely explored topic in plants, and likely to become significant for population genomics and inter specific breeding applications in less domesticated and less funded plant genera. Results We have successfully developed the first set of 768 SNPs assayed by the GGGT for the highly heterozygous genome of Eucalyptus from a mixed Sanger/454 database with 1,164,695 ESTs and the preliminary 4.5X draft genome sequence for E. grandis. A systematic assessment of in silico SNP filtering requirements showed that stringent constraints on the SNP surrounding sequences have a significant impact on SNP genotyping performance and polymorphism. SNP assay success was high for the 288 SNPs selected with more rigorous in silico constraints; 93% of them provided high quality genotype calls and 71% of them were polymorphic in a diverse panel of 96 individuals of five different species. SNP reliability was high across nine Eucalyptus species belonging to three sections within subgenus Symphomyrtus and still satisfactory across species of two additional subgenera, although polymorphism declined as phylogenetic distance increased. Conclusions This study indicates that the GGGT performs well both within and across species of Eucalyptus notwithstanding its nucleotide diversity ≥2%. The development of a much larger array of informative SNPs across

[Growth effect of eucalyptus-acacia mixed plantation in South China].

Science.gov (United States)

Yang, Zeng-Jiang; Xu, Da-Ping; Chen, Wen-Ping; Huang, Lie-Jian; Li, Shang-Jun; Chen, Yuan

2009-10-01

Eucalyptus U6 and Acacia crassicarpa were mixed planted with different ratios and modes to investigate the growth parameters of the two tree species. In the 2-3 years old mixed plantation, the wind-throw of A. crassicarpa decreased markedly with increasing ratio of Eucalyptus U6, the decrement being 26.14% when the Eucalyptus U6/A. crassicarpa ratio was 3 : 1, but the survival rates of Eucalyptus U6 and A. crassicarpa had no significant difference under different planting modes. Mixed planting retarded the A. crassicarpa growth to some extent, with the DBH being 90% of that in pure A. crassicarpa stand. The mixed planting had little effects on the height growth of Eucalyptus U6, but promoted its DBH growth markedly, and the beneficial effect increased with increasing ratio of A. crassicarpa. In the 6 years old 1 : 1 Eucalyptus U6/A. crassicarpa plantation, the Eucalyptus U6 individuals with DBH > 15 cm occupied 32.1%; while in pure Eucalyptus U6 stand, they only accounted for 5.83%. Mixed planting with 2 : 1 Eucalyptus U6/A. crassicarpa could obtain a maximum total biomass of 198.8 m3 x hm(-2), which was 118.8% of the total biomass in pure Eucalyptus U6 stand, or 169.9% of that in pure A. crassicarpa stand. Mixture of Eucalyptus with Acacia would be a good choice to produce Eucalyptus trees with larger DBH.

Polyphenol compounds of the kino of Eucalyptus citriodora; Compostos polifenolicos do kino de Eucalyptus citriodora

Energy Technology Data Exchange (ETDEWEB)

Freitas, Marinalva Oliveira; Lima, Mary Anne S.; Silveira, Edilberto R. [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Quimica Organica e Inorganica]. E-mail: edil@ufc.br

2007-07-01

Phytochemical analysis of the kino of Eucalyptus citriodora led to the isolation of 1-O,2-O-digaloil-6-O-trans-p-cumaroil-beta-D-glucopyranoside, 1-O-trans-p-cumaroil-6-O-cinamoil-beta-D-glucopyranoside, alpha and beta 6-O-trans-p-cumaroil-D-glucopyranoside, 7-methylaromadendrin-4'-O-6{sup -}trans-p-cumaroil-beta-Dglucopyranoside, aromadendrin, aromadendrin-7-methyl-ether, naringenin, sakuranetin, kaempferol-7-methyl-ether and galic acid. Structural elucidation of the isolated compounds was established on the basis of spectral data, particularly by the use of 1D NMR and several 2D shift correlated NMR pulse sequences ({sup 1}H,{sup 1}H-COSY, HMQC, HMBC). (author)

Bacterial diversity of soil under eucalyptus assessed by 16S rDNA sequencing analysis Diversidade bacteriana de solo sob eucaliptos obtida por seqüenciamento do 16S rDNA

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Érico Leandro da Silveira

2006-10-01

Full Text Available Studies on the impact of Eucalyptus spp. on Brazilian soils have focused on soil chemical properties and isolating interesting microbial organisms. Few studies have focused on microbial diversity and ecology in Brazil due to limited coverage of traditional cultivation and isolation methods. Molecular microbial ecology methods based on PCR amplified 16S rDNA have enriched the knowledge of soils microbial biodiversity. The objective of this work was to compare and estimate the bacterial diversity of sympatric communities within soils from two areas, a native forest (NFA and an eucalyptus arboretum (EAA. PCR primers, whose target soil metagenomic 16S rDNA were used to amplify soil DNA, were cloned using pGEM-T and sequenced to determine bacterial diversity. From the NFA soil 134 clones were analyzed, while 116 clones were analyzed from the EAA soil samples. The sequences were compared with those online at the GenBank. Phylogenetic analyses revealed differences between the soil types and high diversity in both communities. Soil from the Eucalyptus spp. arboretum was found to have a greater bacterial diversity than the soil investigated from the native forest area.Estudos sobre impacto do Eucalyptus spp. em solos brasileiros têm focalizado propriedades químicas do solo e isolamento de microrganismos de interesse. No Brasil há pouco enfoque em ecologia e diversidade microbiana, devido às limitações dos métodos tradicionais de cultivo e isolamento. A utilização de métodos moleculares no estudo da ecologia microbiana baseados na amplificação por PCR do 16S rDNA têm enriquecido o conhecimento da biodiversidade microbiana dos solos. O objetivo deste trabalho foi comparar e estimar a diversidade bacteriana de comunidades simpátricas em solos de duas áreas: uma floresta nativa (NFA e outra adjacente com arboreto de eucaliptos (EAA. Oligonucleotídeos iniciadores foram utilizados para amplificar o 16S rDNA metagenômico do solo, o qual foi

QUALIDADE DA CELULOSE KRAFT-ANTRAQUINONA DE Eucalyptus dunnii PLANTADO EM CINCO ESPAÇAMENTOS EM RELAÇÃO AO Eucalyptus grandis E Eucalyptus saligna

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Maria Cladis Mezzomo da Silva

1997-12-01

Full Text Available Este trabalho analisou o efeito de cinco espaçamentos de Eucalyptus dunnii (3 m x 1 m; 3 m x 1,5 m; 3 m x 2 m; 3 m x 3 m; 3 m x 4 m, para produção de celulose kraft-antraquinona, comparados com Eucalyptus grandis e Eucalyptus saligna (ambos no espaçamento 3 m x 2 m. Avaliaram-se a densidade básica e composição química da madeira original, analisando-se extrativos em diclorometano, pentosanas, lignina, solubilidade em NaOH8% e cinzas. Os cavacos foram submetidos a cozimento kraft-antraquinona com álcali ativo variando de 18,5 a 21% para obter um número kappa 17± 1,5; sulfidez a 8%, antraquinona base madeira 0,05%, relação licor/madeira 4:1, tempo até temperatura máxima 60 minutos, tempo à temperatura máxima 45 minutos. A celulose marrom resultante do cozimento kraft-antraquinona foi caracterizada e analisada em seus aspectos físico-químicos (rendimentos, rejeitos, número kappa, viscosidade intrínseca, alvura e solubilidade em NaOH5%. Uma parte desta sofreu refinação em moinho Jökro ao nível de 35°SR e, juntamente com a polpa não-refinada, foram submetidas a testes físico-mecânicos e óticos (resistência à tração, alongamento, estouro, rasgo, volume específico, alvura, resistência ao ar Gurley e ascensão capilar Klemm. O maior consumo de álcali ativo (20,5% ocorreu em espaçamento 3 m x 4 m, proporcionando maior degradação da polpa. Todos os espaçamentos caracterizados apresentaram viabilidade para a produção de celulose kraft-antraquinona, podendo proporcionar redução nos custos de produção de celulose, devido aos menores consumos apresentados de álcali ativo e madeira quando comparados com Eucalyptus grandis e Eucalyptus saligna. Os valores de extrativos e cinzas mostraram-se elevados para Eucalyptus dunnii, potencializando possíveis impactos em termos de incrustações e fechamento de circuito no processo fabril. Diante dos resultados obtidos, a celulose de Eucalyptus dunnii atende às exig

Organogenesis and transient genetic transformation of the hybrid Eucalyptus grandis × Eucalyptus urophylla Organogênese e transformação genética transiente do híbrido Eucalyptus grandis × Eucalyptus urophylla

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Giovana Bomfim de Alcantara

2011-04-01

Full Text Available The hybrid Eucalyptus grandis x Eucalyptus urophylla presents high levels of productivity and potential for use in paper, cellulose and fiber industries. The bud organogenesis from leaf explants of two clones of E. grandis × E. urophylla was studied in order to verify the effect of several factors: subculture duration on multiplication medium, type of explants, entire and half leaves: basal and apical portions, and duration of the culture on a regeneration medium. Differences in organogenic capacity of the two clones tested were observed. The explant most recommended for organogenesis is the basal section of the leaf collected from shoot clusters subcultured every 17 days. Moreover, the leaf explants must be transferred to a fresh bud induction medium every five days. This study also aimed at evaluating factors affecting the genetic transformation of leaf explants with the uidA gene, via co-cultivation with Agrobacterium tumefaciens, such as the pre-culture of the explants on a specific medium, the duration of their co-culture with the bacteria and the addition of acetosyringone to the culture media. The best conditions for the expression of the uidA gene were two days of pre-culture of the leaf tissues, three days of co-culture with the bacteria and the addition of acetosyringone in pre- and co-culture media.O híbrido Eucalyptus grandis x Eucalyptus urophylla apresenta alta produtividade e potencial para indústrias de papel, celulose e fibras. A organogênese de explantes foliares de dois clones de E. grandis × E. urophylla foi estudada para verificar fatores como tempo de repicagem das plântulas matrizes em meio de multiplicação; tipo de explantes, folhas inteiras e de meias-folhas (porções basais e apicais e dos dias que os explantes foliares permaneceram em meio de regeneração. Foram observadas diferenças na capacidade organogênica dos dois clones testados. A parte basal das folhas, coletadas de brotações repicadas a cada 17

In silico characterization of microsatellites in Eucalyptus spp.: abundance, length variation and transposon associations

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Edenilson Rabello

2005-01-01

Full Text Available This study assessed the abundance of microsatellites, or simple sequence repeats (SSR, in 19 Eucalyptus EST libraries from FORESTs, containing cDNA sequences from five species: E. grandis, E. globulus, E. saligna, E. urophylla and E. camaldulensis. Overall, a total of 11,534 SSRs and 8,447 SSR-containing sequences (25.5% of total ESTs were identified, with an average of 1 SSR/2.5 kb when considering all motifs and 1 SSR/3.1 kb when mononucleotides were not included. Dimeric repeats were the most abundant (41.03%, followed by trimerics (36.11% and monomerics (19.59%. The most frequent motifs were A/T (87.24% for monomerics, AG/CT (94.44% for dimerics, CCG/CGG (37.87% for trimerics, AAGG/CCTT (18.75% for tetramerics, AGAGG/CCTCT (14.04% for pentamerics and ACGGCG/CGCCGT (6.30% for hexamerics. According to sequence length, Class II or potentially variable markers were the most commonly found, followed by Class III. Two sequences presented high similarity to previously published Eucalyptus sequences from the NCBI database, EMBRA_72 and EMBRA_122. Local blastn search for transposons did not reveal the presence of any transposable elements with a cut-off value of 10-50. The large number of microsatellites identified will contribute to the refinement of marker-assisted mapping and to the discovery of novel markers for virtually all genes of economic interest.

Isolation and molecular characterization of Cryptococcus species isolated from pigeon nests and Eucalyptus trees.

Science.gov (United States)

Kamari, A; Sepahvand, A; Mohammadi, R

2017-06-01

Cryptococcus species are pathogenic and non-pathogenic basidiomycete yeasts that are found widely in the environment. Based on phenotypic methods, this genus has many species; however, its taxonomy is presently being re-evaluated by modern techniques. The Cryptococcus species complex includes two sibling taxa of Cryptococcus neoformans and Cryptococcus gattii . We aimed to investigate the possible distribution of Cryptococcus species in pigeon nests and Eucalyptus trees in Ilam, Iran, using molecular techniques. Two hundred and seventy-four specimens were collected from pigeon nests and Eucalyptus trees during 2016-2017. All the specimens were sub-cultured on Sabouraud Glucose Agar with chloramphenicol and bird seed agar. For molecular identification, the ITS15.8SITS2 rDNA region was amplified using the first and fourth internal transcribed spacer (ITS1 and ITS4, respectively) primers. The purified products were applied for cycle sequencing reactions in forward direction with ITS1 primer. The obtained results were analyzed with Chromas 2.3. Thirty-three out of 186 cultures (17.7%) and 11 out of 88 cultures (12.5%) were positive among pigeon nest and Eucalyptus tree specimens, respectively. Cryptococcus albidus (17.2%), C. albidus var. kuetzingii (3.4%), C. adeliensis (3.4%), C. uzbekistanensis (3.4%), and C. neoformans var. grubii (3.4%) were isolated from pigeon nests, and Cryptococcus adeliensis (25%) was the only Cryptococcus species isolated from Eucalyptus trees. The presence of pigeons and Eucalyptus trees in the vicinity of some particular places such as rest homes and hospitals should be considered as a risk factor for the immunocompromised population.

Should Exotic Eucalyptus be Planted in Subtropical China: Insights from Understory Plant Diversity in Two Contrasting Eucalyptus Chronosequences.

Science.gov (United States)

Wu, Jianping; Fan, Houbao; Liu, Wenfei; Huang, Guomin; Tang, Jianfu; Zeng, Ruijin; Huang, Jing; Liu, Zhanfeng

2015-11-01

Although Eucalyptus is widely planted in South China, whose effects on native biodiversity are unclear. The objective of this study was to quantify the richness and composition of understory plants in two contrasting Eucalyptus chronosequences in South China. One was in Zhangzhou City with plantation age of 2, 4, and 6 years after clear-cutting Chinese fir forests, while the other was in Heshan City with plantation age of 2, 3, and 24 years that reforested on barren lands. Results showed that the richness of understory plants and functional groups was not significantly altered in the Zhangzhou chronosequence, while increased in the 24-year-old plantations, with a significantly larger proportion of woody plants than the younger plantations for the Heshan chronosequence. Moreover, a higher richness of woody plants accompanied by a lower richness of herbaceous species was detected in the Zhangzhou chronosequence compared with the Heshan one. To balance the need for pulp production and plant diversity conservation, we suggest that intercropping approaches between exotic Eucalyptus plantations and native forests should be considered in the fast rotation Eucalyptus plantations. However, Eucalyptus plantations may be used as pioneer species to sustain ecosystem functioning for the degraded lands.

Eucalyptus gunnii: A possible source of bioenergy?

Energy Technology Data Exchange (ETDEWEB)

Forrest, Mary; Moore, Tom [UCD School of Biology and Environmental Science, Agriculture and Food Science Centre, University College Dublin, Belfield, Dublin 4 (Ireland)

2008-10-15

Eucalyptus are widely grown throughout the world for timber, essential oil, fuel, biomass and cut foliage. In experiments in University College Dublin (UCD), Eucalyptus gunnii yielded an average dry weight of 4.74 kg per plant per annum, equivalent to 12.59 t dm ha{sup -1}. The average calorific values of 17.60 MJ kg{sup -1} (leafy material) and 17.09 MJ kg{sup -1} (woody material) are less than the values reported for other species of Eucalyptus. (author)

Profitability of Eucalyptus growing in Busiro, Mpigi District, Uganda

African Journals Online (AJOL)

supply of woody products from the existing forest resources is decreasing. ... Key words: Household level investments; Eucalyptus; financial profitability. ... eucalyptus (kalitunsi) tree species to other forest tree ... financial analyses is an assumption that market prices eucalyptus woodlot is situated in ... not be of good quality.

Effect of eucalyptus ( Eucalyptus camaldulensis ) and maize (Zea ...

African Journals Online (AJOL)

However eucalyptus plantations produce large amounts of litter, which impact on groundnut has not been clearly elucidated yet. In order to investigate litter accumulation effect on growth, development, and groundnut root infection by arbuscular mycorrhizal fungi (AMF) and rhizobia, a greenhouse experiment was performed ...

Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags

Science.gov (United States)

de Souza, Sandro J.; Camargo, Anamaria A.; Briones, Marcelo R. S.; Costa, Fernando F.; Nagai, Maria Aparecida; Verjovski-Almeida, Sergio; Zago, Marco A.; Andrade, Luis Eduardo C.; Carrer, Helaine; El-Dorry, Hamza F. A.; Espreafico, Enilza M.; Habr-Gama, Angelita; Giannella-Neto, Daniel; Goldman, Gustavo H.; Gruber, Arthur; Hackel, Christine; Kimura, Edna T.; Maciel, Rui M. B.; Marie, Suely K. N.; Martins, Elizabeth A. L.; Nóbrega, Marina P.; Paçó-Larson, Maria Luisa; Pardini, Maria Inês M. C.; Pereira, Gonçalo G.; Pesquero, João Bosco; Rodrigues, Vanderlei; Rogatto, Silvia R.; da Silva, Ismael D. C. G.; Sogayar, Mari C.; de Fátima Sonati, Maria; Tajara, Eloiza H.; Valentini, Sandro R.; Acencio, Marcio; Alberto, Fernando L.; Amaral, Maria Elisabete J.; Aneas, Ivy; Bengtson, Mário Henrique; Carraro, Dirce M.; Carvalho, Alex F.; Carvalho, Lúcia Helena; Cerutti, Janete M.; Corrêa, Maria Lucia C.; Costa, Maria Cristina R.; Curcio, Cyntia; Gushiken, Tsieko; Ho, Paulo L.; Kimura, Elza; Leite, Luciana C. C.; Maia, Gustavo; Majumder, Paromita; Marins, Mozart; Matsukuma, Adriana; Melo, Analy S. A.; Mestriner, Carlos Alberto; Miracca, Elisabete C.; Miranda, Daniela C.; Nascimento, Ana Lucia T. O.; Nóbrega, Francisco G.; Ojopi, Élida P. B.; Pandolfi, José Rodrigo C.; Pessoa, Luciana Gilbert; Rahal, Paula; Rainho, Claudia A.; da Ro's, Nancy; de Sá, Renata G.; Sales, Magaly M.; da Silva, Neusa P.; Silva, Tereza C.; da Silva, Wilson; Simão, Daniel F.; Sousa, Josane F.; Stecconi, Daniella; Tsukumo, Fernando; Valente, Valéria; Zalcberg, Heloisa; Brentani, Ricardo R.; Reis, Luis F. L.; Dias-Neto, Emmanuel; Simpson, Andrew J. G.

2000-01-01

Transcribed sequences in the human genome can be identified with confidence only by alignment with sequences derived from cDNAs synthesized from naturally occurring mRNAs. We constructed a set of 250,000 cDNAs that represent partial expressed gene sequences and that are biased toward the central coding regions of the resulting transcripts. They are termed ORF expressed sequence tags (ORESTES). The 250,000 ORESTES were assembled into 81,429 contigs. Of these, 1,181 (1.45%) were found to match sequences in chromosome 22 with at least one ORESTES contig for 162 (65.6%) of the 247 known genes, for 67 (44.6%) of the 150 related genes, and for 45 of the 148 (30.4%) EST-predicted genes on this chromosome. Using a set of stringent criteria to validate our sequences, we identified a further 219 previously unannotated transcribed sequences on chromosome 22. Of these, 171 were in fact also defined by EST or full length cDNA sequences available in GenBank but not utilized in the initial annotation of the first human chromosome sequence. Thus despite representing less than 15% of all expressed human sequences in the public databases at the time of the present analysis, ORESTES sequences defined 48 transcribed sequences on chromosome 22 not defined by other sequences. All of the transcribed sequences defined by ORESTES coincided with DNA regions predicted as encoding exons by genscan. (http://genes.mit.edu/GENSCAN.html). PMID:11070084

Qualidade da celulose kraft-antraquinona de Eucalyptus dunnii plantado em cinco espaçamentos em relação ao Eucalyptus grandis e Eucalyptus saligna.

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Giovanni Willer Ferreira

2009-09-01

Full Text Available Normal 0 21 false false false MicrosoftInternetExplorer4 Este trabalho analisou o efeito de cinco espaçamentos de Eucalyptus dunnii (3 m x 1 m; 3 m x 1,5 m; 3 m x 2 m; 3 m x 3 m; 3 m x 4 m, para produção de celulose kraft-antraquinona, comparados com Eucalyptus grandis e Eucalyptus saligna (ambos no espaçamento 3 m x 2 m. Avaliaram-se a densidade básica e composição química da madeira original, analisando-se extrativos em diclorometano, pentosanas, lignina, solubilidade em NaOH8% e cinzas. Os cavacos foram submetidos a cozimento kraft-antraquinona com álcali ativo variando de 18,5 a 21% para obter um número kappa 17± 1,5; sulfidez a 8%, antraquinona base madeira 0,05%, relação licor/madeira 4:1, tempo até temperatura máxima 60 minutos, tempo à temperatura máxima 45 minutos. A celulose marrom resultante do cozimento kraft-antraquinona foi caracterizada e analisada em seus aspectos físico-químicos (rendimentos, rejeitos, número kappa, viscosidade intrínseca, alvura e solubilidade em NaOH5%. Uma parte desta sofreu refinação em moinho Jökro ao nível de 35°SR e, juntamente com a polpa não-refinada, foram submetidas a testes físico-mecânicos e óticos (resistência à tração, alongamento, estouro, rasgo, volume específico, alvura, resistência ao ar Gurley e ascensão capilar Klemm. O maior consumo de álcali ativo (20,5% ocorreu em espaçamento 3 m x 4 m, proporcionando maior degradação da polpa. Todos os espaçamentos caracterizados apresentaram viabilidade para a produção de celulose kraft-antraquinona, podendo proporcionar redução nos custos de produção de celulose, devido aos menores consumos apresentados de álcali ativo e madeira quando comparados com Eucalyptus grandis e Eucalyptus saligna. Os valores de extrativos e cinzas mostraram-se elevados para Eucalyptus dunnii, potencializando possíveis impactos em termos de incrustações e fechamento de circuito no processo fabril. Diante dos resultados

RESISTÊNCIA BIOLÓGICA DA MADEIRA TRATADA DE Eucalyptus grandis E Eucalyptus cloeziana A FUNGOS APODRECEDORES EM ENSAIOS DE LABORATÓRIO

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Magnos Alan Vivian

2015-01-01

Full Text Available The present study aimed to evaluate the biological resistance of treated wood from Eucalyptus grandis and Eucalyptus cloeziana under the action of biodeteriorative organisms in laboratory testing. Thus, we used trees of Eucalyptus grandis and Eucalyptus cloeziana, both 16 years old, which was converted into planks and subjected to preservative treatment in an autoclave with chromate copper arsenate (CCA. Then, it was made the specimens for the conduct of accelerated decay test, as recommended by ASTM. From the results, it was observed for the fungus Trametes versicolor that the preservative treatment was effective in reducing the biological degradation of the wood of the two species, with reduced mass loss in 35.17 and 82.31% for wood Eucalyptus grandis and Eucalyptus cloeziana, respectively, as for the fungus Gloeophyllum trabeum mass loss was reduced by 6.79 and 96.65%, compared to the control. Based on the conditions of realization of the present study, it was observed that preservative treatment with CCA is effective in the increasing the biological resistance of the wood under the action of fungi Trametes versicolor and Gloeophyllum trabeum.

Estudo de algumas propriedades mecânicas da madeira de um híbrido clonal de Eucalyptus urophylla X Eucalyptus grandis Study of some mechanical properties of wood in a clonal hybrid of Eucalyptus urophylla X Eucalyptus grandis

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Fabrício Gomes Gonçalves

2009-06-01

Full Text Available A procura por madeiras oriundas de reflorestamentos destinadas à serraria é uma realidade já há muitos anos, principalmente aquelas das espécies do gênero Eucalyptus. Visando buscar novas informações importantes para esse mercado, este trabalho objetivou determinar algumas propriedades mecânicas da madeira de um híbrido clonal de Eucalyptus urophylla x Eucalyptus grandis de duas idades e provenientes de talhadia simples e de reforma. Os resultados indicaram que a madeira desse híbrido apresenta boas características tecnológicas, destacando-se a segunda tora (a partir de 3 m com as melhores propriedades de flexão estática (Módulo de Elasticidade - MOE e Módulo de Ruptura - MOR e Compressão Axial das fibras. As árvores de maior idade (166 meses e que sofreram dois desbastes apresentaram as melhores propriedades de flexão estática e compressão axial.The search for wood originated from reforestations destined to sawmill has been observed for many years, mainly for the Eucalyptus species. Searching for information to assist this market, the aim of this study was to determine some mechanical properties of the wood from a Eucalyptus urophylla x Eucalyptus grandis clonal hybrid, at two different ages and coming from coppice and reform. The results show that the wood of this clonal hybrid presents good technological characteristics and is the second best log (starting from 3,0 m, as to static bending properties (Module of Elasticity - MOE and Module of Rupture - MOR. The oldest trees (166 months - E2 which suffered two thinning presented the best results for the property of static bending and axial crushing (CA.

Compostos polifenólicos do kino de Eucalyptus citriodora Polyphenol compounds of the kino of Eucalyptus citriodora

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Marinalva Oliveira Freitas

2007-01-01

Full Text Available Phytochemical analysis of the kino of Eucalyptus citriodora led to the isolation of 1-O,2-O-digaloil-6-O-trans -p-cumaroil-beta-D-glucopyranoside, 1-O-trans-p-cumaroil-6-O -cinamoil-beta-D-glucopyranoside, alpha and beta 6-O-trans-p-cumaroil-D-glucopyranoside, 7-methylaromadendrin-4'-O-6''- trans-p-cumaroil-beta-D-glucopyranoside, aromadendrin, aromadendrin-7-methyl-ether, naringenin, sakuranetin, kaempferol-7-methyl-ether and galic acid. Structural elucidation of the isolated compounds was established on the basis of spectral data, particularly by the use of 1D NMR and several 2D shift correlated NMR pulse sequences (¹H,¹H-COSY, HMQC, HMBC.

Eucalyptus Forest Information System for the Portuguese pulp and paper industry

Science.gov (United States)

Luis Fonseca; Rita Crespo; Henk Feith; Jose Luis Carvalho; Antonio Macedo; Joao Pedro Pina

2000-01-01

To support the management of the Portuguese eucalyptus forest, the Association of Portuguese Pulp and Paper Industries (CELPA) decided to develop a Eucalyptus Forest Information System (EFIS). The specific goals of the EFIS are: characterization and development of the eucalyptus forest over time; planning of successive national eucalyptus forest inventories; estimation...

Plants of an Eucalyptus clone damaged by Scolytidae and Platypodidae (Coleoptera Plantas de Eucalyptus atacadas por Scolytidae e Platypodidae (Coleoptera

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José Cola Zanuncio

2005-05-01

Full Text Available Species of Scolytidae and Platypodidae were evaluated in a plantation using a clone of Eucalyptus grandis x Eucalyptus urophylla in the State of Minas Gerais, Brazil. Wood disks with galleries were taken from 15 eucalyptus trees between 0.5 and 1.5 m height. After collection, all trees attacked were burned. Woodborers obtained from these disks were identified as Premnobius cavipennis, Premnobius ambitiosus, Dryocoetoides cristatus (Coleoptera: Scolytidae and Euplatypus parallelus (Coleoptera: Platypodidae. This is the first report of D. cristatus, a Brazilian native species, damaging eucalyptus, which shows its adaptation to this plant.O objetivo deste trabalho foi avaliar o ataque de Scolytidae e Platypodidae em talhão de clone Eucalyptus grandis x Eucalyptus urophylla na região de Montes Claros, Estado de Minas Gerais, Brasil. Discos de madeira com galerias desses insetos foram retirados de 15 árvores de eucalipto entre 0,5 e 1,5 m de altura. Após a coleta deste material, as árvores atacadas foram queimadas. Os indivíduos da ordem Coleoptera obtidos desses discos foram identificados como Premnobius cavipennis, Premnobius ambitiosus e Dryocoetoides cristatus (Coleoptera: Scolytidae e Euplatypus parallelus (Coleoptera: Platypodidae. O ataque de D. cristatus, espécie nativa do Brasil, ao eucalipto ainda não havia sido relatado, o que mostra sua adaptação a essa planta.

Aggregate stability in soils cultivated with eucalyptus

Science.gov (United States)

Eucalyptus cultivation has increased in many Brazilian regions. In order to recommend good management practices, it is necessary to understand changes in soil properties where eucalyptus is planted. Aggregate stability analyses have proved to be a useful tool to measure soil effects caused by change...

Insect pests of Eucalyptus and their control

Energy Technology Data Exchange (ETDEWEB)

Sen-Sarma, P K; Thakur, M L

1983-12-01

In India, about sixty odd species of insects have so far been recorded to be associated with Eucalyptus. Important pests are some xylophagous insects, sap suckers, defoliators and termites. Of these, stem and root borer, Celostrna scabrator Fabr, and some species of termites have been recognised as key pests, whereas Apogonia coriaces Waterhouse, Mimeta mundissima Walker (Coleoptera: Scarabaeidae), Agrotis ipsilon Hufnagel (Lepidoptera: Noctuidae), Brachytrypus portenosus Lichtenstein and Gymmogryllus humeralis Walker (Orthoptera: Gryllidae) are likely to become potential pests in Eucalyptus nurseries. In this paper available information on insect pests of Eucalyptus, their bioecology and control measures have been presented.

USE OF EUCALYPTUS WOOD FOR ORIENTED STRAND BOARD (OSB MANUFACTURING

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Setsuo Iwakiri

2004-06-01

Full Text Available This research evaluated the potential use of Eucalyptus species for OSB manufacturing. The boards were manufactured at the density of 0,70 g/cm³ and 6% of the phenol-formaldheyde resin contents. The following Eucalyptus species were studied: E. grandis E. dunnii ,E. tereticornis E. saligna ,E. citriodora, and E. maculata. The results of the physical and mechanical property tests showed high potentiality of the uses of Eucalyptus grandis and Eucalyptus saligna for OSB manufacturing, Boards manufactured with Eucalyptus grandis wood presented similar or higher average values for physical and mechanical properties, in comparison to Pinus taeda, which is the main species used for OSB production in Brazil.

The Transcriptome and Terpene Profile of Eucalyptus grandis Reveals Mechanisms of Defense Against the Insect Pest, Leptocybe invasa.

Science.gov (United States)

Oates, Caryn N; Külheim, Carsten; Myburg, Alexander A; Slippers, Bernard; Naidoo, Sanushka

2015-07-01

Plants have evolved complex defenses that allow them to protect themselves against pests and pathogens. However, there is relatively little information regarding the Eucalyptus defensome. Leptocybe invasa is one of the most damaging pests in global Eucalyptus forestry, and essentially nothing is known regarding the molecular mechanisms governing the interaction between the pest and host. The aim of the study was to investigate changes in the transcriptional landscape and terpene profile of a resistant and susceptible Eucalyptus genotype in an effort to improve our understanding of this interaction. We used RNA-seqencing to investigate transcriptional changes following L. invasa oviposition. Expression levels were validated using real-time quantitative PCR. Terpene profiles were investigated using gas chromatography coupled to mass spectometry on uninfested and oviposited leaves. We found 698 and 1,115 significantly differentially expressed genes from the resistant and susceptible interactions, respectively. Gene Ontology enrichment and Mapman analyses identified putative defense mechanisms including cell wall reinforcement, protease inhibitors, cell cycle suppression and regulatory hormone signaling pathways. There were significant differences in the mono- and sesquiterpene profiles between genotypes and between control and infested material. A model of the interaction between Eucalyptus and L. invasa was proposed from the transcriptomic and chemical data. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Eucalyptus sp. at the Intersection of Environment and Culture in Kenya

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Brandy M Garrett Kluthe

2017-04-01

Full Text Available Members of the genus Eucalyptus are popular on small farms throughout Kenya, and include species such as Eucalyptus saligna, Eucalpytus globulus, and Eucalyptus grandis. Although they are fast-growing and perform well on marginal land, these trees are associated with negative environmental effects in Africa and elsewhere they have been introduced. In-person surveys were conducted with small farmers in Kenya to determine patterns of Eucalyptus sp. stand use and cultural importance. It was found that despite acknowledged short and long term environmental consequences, Eucalyptus sp. remains popular for medium term economic investment. These findings are consistent with other reports of Eucalyptus sp. woodlots serving as funding sources for education, health emergencies, etc., in parts of the world where bank loans are unavailable. Further, it was found that some farmers are using modified silviculture practices to ameliorate the negative effects of Eucalyptus sp., and others are seeking indigenous alternatives.           

Propriedades de chapas de flocos fabricadas com adesivo de uréia-formaldeído e de taninos da casca de Eucalyptus grandis W. Hill ex Maiden ou de Eucalyptus pellita F. Muell. Properties of flakeboards made from urea-formaldehyde and bark tannins adhesives of Eucalyptus grandis or Eucalyptus pellita

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Angélica de Cássia Oliveira Carneiro

2004-10-01

Full Text Available Os taninos foram extraídos da casca de Eucalyptus grandis e Eucalyptus pellita, com água quente, à qual se adicionaram 4,5% de sulfito de sódio, durante três horas. As temperaturas da solução foram iguais a 70 e 100 ºC para Eucalyptus grandis e Eucalyptus pellita, respectivamente. Para a produção dos adesivos e com o intuito de reduzir a sua viscosidade, os taninos foram sulfitados com sulfito de sódio e ácido acético. Formulações adesivas foram preparadas adicionando-se 0, 25, 50, 75 ou 100% de adesivos tânicos ao adesivo comercial de uréia-formaldeído. Foram fabricadas chapas de flocos de Pinus elliottii Engelm. e Eucalyptus grandis, utilizando-se 8% da formulação adesiva. As propriedades das chapas foram determinadas segundo a norma ASTM D-1037, de 1993. Observou-se que as propriedades das chapas foram superiores ao mínimo estabelecido pela norma ANSI/A 280.1-93, exceto no caso da resistência à umidade. Verificou-se, ainda, que o emprego de uma formulação adesiva contendo resina à base de uréia-formaldeído e tanino-formaldeído pode melhorar algumas propriedades.Bark tannins of Eucalyptus grandis and Eucalyptus pellita were extracted with 4,5% sodium sulfite in hot water solution for a period of three hours. Solution temperatures were 70 and 100ºC, for Eucalyptus grandis and Eucalyptus pellita bark respectively. Tannins were reacted with acetic acid and sodium sulfite to reduce adhesive viscosity. Adhesive formulations were prepared adding 0, 25, 50, 75 or 100% of tannin adhesives to the commercial urea-formaldehyde adhesive. Flakeboards were fabricated with 8% resin content. Board properties were determined according to ASTM D-1037 standards. Except for humidity, all board properties were superior to the values established by ANSI.A 208.1-93 commercial standard. Addition of tannins to the urea-formaldehyde adhesive improved some properties.

Utilização de madeiras de Eucalyptus grandis E Eucalyptus dunnii para produção de painéis de partículas orientadas – OSB

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Setsuo Iwakiri

2008-01-01

Full Text Available This study was developed to evaluate the feasibility of OSB manufacturing using woods of Eucalyptus grandis and Eucalyptus dunnii. Boards with nominal density of 0,70 g/cm³ and 1,0 g/cm³ were manufactured in laboratory, using 100% of wood particles from Pinus taeda, Eucalyptus grandis and Eucalyptus dunnii, and mixtures of 50% of Pinus taeda in the internal layer of the board, with 50% of Eucalyptus grandis and 50% of Eucalyptus dunnii. The boards of Eucalyptus grandis with density of 0,70 g/cm³, as standard board density, showed the values of properties compatible with the requirements of the Canadian and European Standards and also in relation of boards manufactured from Pinus taeda. The results of the mechanical properties showed an increase in the MOE and MOR in static bending with the increase in the board density, opening the possibility to use the high density OSB for applications requiring higher strength. The results of this research indicate that wood of Eucalyptus grandis can be used as alternative specie to OSB manufacturing in the Brazil.

Development Potential, in a Greenhouse, of Cuttings of the Hybrid Eucalyptus grandis x Eucalyptus camaldulensis

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M. N. Garcia

2013-03-01

Full Text Available Abstract: This study evaluated the potential for development in the greenhouse, cuttings of the hybrid of Eucalyptus grandis x Eucalyptus camaldulensis in Sinop - Mato Grosso and generated equations to estimate the percentage of rooting parameters. Were measured: the percentage of cuttings with some degree of modification, the percentage of cuttings in the percentage of cuttings with roots larger than 10 cm in length. Also measured was the neck diameter, height and leaf area index. The heights and leaf area showed lower development within the greenhouse. The rooting potential is based on curve speed of rooting and was found 12 days after staking. The identification of the optimal point of withdrawal of the shoots of the greenhouse through the intercept curves daily current increase curve (DCI e daily average increase (DAI, being 19 days after staking. The company derives the stakes with 24 days underdoing the potential of the species and structures used.Keywords: Eucalyptus, greenhouse management and rooting

Essential oil composition of Eucalyptus microtheca and Eucalyptus viminalis

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Malek Taher Maghsoodlou

2015-10-01

Full Text Available Objective: Eucalyptus (Fam. Myrtaceae is a medicinal plant and various Eucalyptus species possess potent pharmacological actions against diabetes, hepatotoxicity, and inflammation. This study aims to investigate essential oil compositionfrom leaves and flowers of E. microthecaand E. viminalisleavesgrowing in the Southeast of Iran. Materials and Methods: The aerial parts of these plants were collected from Zahedan, Sistan and Baluchestan province, Iran in 2013.After drying the plant materials in the shade, the chemical composition of the essential oils was obtained by hydro-distillation method using a Clevenger-type apparatus and analyzed by GC/MS. Results: In the essential oil of E. microtheca leaves, 101 compounds representing 100%, were identified. Among them, α-phellandrene (16.487%, aromadendrene (12.773%, α-pinene (6.752%, globulol (5.997%, ledene (5.665%, P-cymen (5.251%, and β-pinene (5.006% were the major constituents.  In the oil of E. microtheca flowers, 88 compounds representing 100%, were identified in which α-pinene (16.246%, O-cymen (13.522%, β-pinene (11.082%, aromadendrene (7.444%, α-phellandrene (7.006%, globulol (5.419%, and 9-octadecenamide (5.414% were the major components. Sixty six compounds representing 100% were identified in the oil of E. viminalis leaves. The major compounds were 1, 8-cineole (57.757%, α-pinene (13.379%, limonene (5.443%, and globulol (3.054%. Conclusion: The results showed the essential oils fromthe aerial parts of Eucalyptus speciesare a cheap source for the commercial isolation of α-phellandrene, α-pinene, and 1, 8-cineole compounds to be used in medicinal and food products. Furthermore, these plants could be an alternative source of insecticide agents.

Essential oil composition of Eucalyptus microtheca and Eucalyptus viminalis.

Science.gov (United States)

Maghsoodlou, Malek Taher; Kazemipoor, Nasrin; Valizadeh, Jafar; Falak Nezhad Seifi, Mohsen; Rahneshan, Nahid

2015-01-01

Eucalyptus (Fam. Myrtaceae) is a medicinal plant and various Eucalyptus species possess potent pharmacological actions against diabetes, hepatotoxicity, and inflammation. This study aims to investigate essential oil composition from leaves and flowers of E. microtheca and E. viminalis leaves growing in the Southeast of Iran. The aerial parts of these plants were collected from Zahedan, Sistan and Baluchestan province, Iran in 2013. After drying the plant materials in the shade, the chemical composition of the essential oils was obtained by hydro-distillation method using a Clevenger-type apparatus and analyzed by GC/MS. In the essential oil of E. microtheca leaves, 101 compounds representing 100%, were identified. Among them, α-phellandrene (16.487%), aromadendrene (12.773%), α-pinene (6.752%), globulol (5.997%), ledene (5.665%), P-cymen (5.251%), and β-pinene (5.006%) were the major constituents. In the oil of E. microtheca flowers, 88 compounds representing 100%, were identified in which α-pinene (16.246%), O-cymen (13.522%), β-pinene (11.082%), aromadendrene (7.444%), α-phellandrene (7.006%), globulol (5.419%), and 9-octadecenamide (5.414%) were the major components. Sixty six compounds representing 100% were identified in the oil of E. viminalis leaves. The major compounds were 1, 8-cineole (57.757%), α-pinene (13.379%), limonene (5.443%), and globulol (3.054%). The results showed the essential oils from the aerial parts of Eucalyptus species are a cheap source for the commercial isolation of α-phellandrene, α-pinene, and 1, 8-cineole compounds to be used in medicinal and food products. Furthermore, these plants could be an alternative source of insecticide agents.

Qualidade da celulose kraft-antraquinona de Eucalyptus dunnii plantado em cinco espaçamentos em relação ao Eucalyptus grandis e Eucalyptus saligna.

OpenAIRE

Giovanni Willer Ferreira; Jorge Vieira Gonzaga; Celso Edmundo B. Foelkel; Teotônio Francisco de Assis; Edvins Ratnieks; Maria Cladis Mezzomo da Silva

2009-01-01

Este trabalho analisou o efeito de cinco espaçamentos de Eucalyptus dunnii (3 m x 1 m; 3 m x 1,5 m; 3 m x 2 m; 3 m x 3 m; 3 m x 4 m), para produção de celulose kraft-antraquinona, comparados com Eucalyptus grandis e Eucalyptus saligna (ambos no espaçamento 3 m x 2 m). Avaliaram-se a densidade básica e composição química da madeira original, analisando-se extrativos em diclorometano, pentosanas, lignina, solubilidade em NaOH8% e cinzas. Os cavacos foram submetidos a cozimento kraft-antraqu...

Regeneration and transformation of Eucalyptus grandis

OpenAIRE

Esteki, Leila

2013-01-01

Dissertação de mestrado em Biologia Molecular, Biotecnologia e Bioempreendedorismo em Plantas Eucalyptus grandis is the most widely used species in planted forests in tropical and subtropical areas. The traits of interest underlying Eucalyptus breeding programs concern productivity and wood quality for the pulp and paper industry, as well as biotic and abiotic stress tolerance. The development of an efficient transformation protocol is necessary to explore eucalypt resources th...

allelopathic effects of eucalyptus tereticornis on phaseolus vulgaris

African Journals Online (AJOL)

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1. ALLELOPATHIC EFFECTS OF EUCALYPTUS TERETICORNIS ON PHASEOLUS. VULGARIS SEEDLINGS. Sale, F.A.. Department of Forestry and Wildlife, Faculty of ..... Sale, F.A. (2009). Allelopathic influence of Acacia auriculiformis. Eucalyptus citriodora and Gliricidia sepium on germination, growth and yield of millet.

Qualidade de juntas coladas com lâminas de madeira oriundas de três regiões do tronco de Eucalyptus grandis, Eucalyptus saligna e Pinus elliottii Quality of wood joints glued with wood veneers from three trunk regions of Eucalyptus grandis, Eucalyptus saligna and Pinus elliottii

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Benedito Rocha Vital

2006-08-01

Full Text Available Este experimento teve como objetivo avaliar a resistência de juntas coladas formadas pelas combinações de lâminas provenientes de três posições no tronco da madeira de Eucalyptus grandis, Eucalyptus saligna e Pinus elliottii. Foram empregados adesivos à base de poliacetato de vinila de média e alta viscosidade e resorcinol-formaldeído nas gramaturas de 150 g/m², em face simples para o poliacetato de vinila de média e alta viscosidades e 300 g/m², em face dupla, para o adesivo resorcinólico. O teor médio de umidade das lâminas, no momento da colagem, foi igual a 14%. Os valores médios mais elevados de resistência ao cisalhamento foram obtidos nas juntas produzidas com madeira de Eucalyptus saligna, coladas com adesivos de poliacetato de média viscosidade e resorcinol-formaldeído. A maior porcentagem de falha profunda na madeira foi obtida em juntas de madeira de Pinus elliottii, unidas com adesivo de poliacetato de alta viscosidade, seguidas das juntas de Eucalyptus grandis e coladas com adesivo de poliacetato de média viscosidade. As combinações de lâminas oriundas das seguintes posições no tronco: medula e casca, intermediária e casca e casca e casca resultaram em linhas de cola com maiores resistências ao cisalhamento.The objective of this work was to evaluate the shear strength of glued wood joints from pith, outer and intermediary wood of Eucalyptus saligna, Eucalyptus grandis and Pinus elliottii. High and medium viscosity polyvinyl acetate and resorcinol-phenol adhesives were applied at spread rate of 150 g/m² in single line and at spread rate of 300 g/m² in double glue line for the resorcinolic adhesive. The mean wood moisture content was 14%. Higher shear strength was obtained with Eucalyptus saligna veneer glued with medium viscosity polyvinyl resorcinolic adhesive. The highest percentage of wood failure was found on Pinus elliottii veneer glued with high viscosity polyvinyl acetate adhesive followed by

Polyphenol compounds of the kino of Eucalyptus citriodora

International Nuclear Information System (INIS)

Freitas, Marinalva Oliveira; Lima, Mary Anne S.; Silveira, Edilberto R.

2007-01-01

Phytochemical analysis of the kino of Eucalyptus citriodora led to the isolation of 1-O,2-O-digaloil-6-O-trans-p-cumaroil-beta-D-glucopyranoside, 1-O-trans-p-cumaroil-6-O-cinamoil-beta-D-glucopyranoside, alpha and beta 6-O-trans-p-cumaroil-D-glucopyranoside, 7-methylaromadendrin-4'-O-6 - trans-p-cumaroil-beta-Dglucopyranoside, aromadendrin, aromadendrin-7-methyl-ether, naringenin, sakuranetin, kaempferol-7-methyl-ether and galic acid. Structural elucidation of the isolated compounds was established on the basis of spectral data, particularly by the use of 1D NMR and several 2D shift correlated NMR pulse sequences ( 1 H, 1 H-COSY, HMQC, HMBC). (author)

Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags

DEFF Research Database (Denmark)

de Souza, S J; Camargo, A A; Briones, M R

2000-01-01

Transcribed sequences in the human genome can be identified with confidence only by alignment with sequences derived from cDNAs synthesized from naturally occurring mRNAs. We constructed a set of 250,000 cDNAs that represent partial expressed gene sequences and that are biased toward the central ...

Eucalyptus grandis AND Eucalyptus dunnii USE FOR WOOD-CEMENT PANELS MANUFACTURING

Directory of Open Access Journals (Sweden)

Setsuo Iwakiri

2008-03-01

Full Text Available This research evaluated the potential use of Eucalyptus grandis and Eucalyptus dunnii wood for wood-cement panelsmanufacturing. The boards were manufactured at the density of 1,20 g/cm³, using portland cement as mineral bonding and woodfurnish without treatment, treated in cold water and hot water. The wood furnish of Pinus taeda was used as control. The resultsindicated that it is not necessary to treat E. grandis and E. dunni wood for wood-cement board manufacturing. In relation to woodspecies, the board manufactured with E. dunnii showed lower values of mechanical properties. However, boards manufactured of E.grandis wood showed satisfactory results in comparison to boards of P. taeda and the referenced values of BISON process and otherproducts cited in the pertnent literature, indicating the high potential for wood-cement board manufacture of this tree species.

Volume loss as a tool to assess kiln drying of eucalyptus wood

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Djeison Cesar Batista

Full Text Available In this study, we aimed to analyze the kiln drying quality of Eucalyptus grandis, Eucalyptus saligna and Eucalyptus dunnii woods with respect to volume loss. Wood from the three species was kiln dried together with the same drying schedule and conditions in a conventional-temperature pilot kiln. Three kinds of volume loss were evaluated: total - from saturated (initial to machined (final condition; shrinkage - from saturated to 10% moisture content; and machining - from 10% moisture content to machined condition. Eucalyptus grandis wood was the most dimensionally stable and presented the smallest volume loss due to shrinkage. Although they had different shrinkage behaviors, Eucalyptus grandis and Eucalyptus saligna woods presented the same drying quality regarding machining and total volume losses. These species can be considered the same for kiln drying. Eucalyptus dunnii wood presented the worst quality in drying, and should not be kiln dried in the same batch with the other species.

Mining of expressed sequence tag libraries of cacao

Indian Academy of Sciences (India)

Expressed sequence tags (ESTs) provide researchers with a quick and inexpensive route for discovering new genes, data on gene expression and regulation, and also provide genic markers that help in constructing genome maps. Cacao is an important perennial crop of humid tropics. Cacao EST sequences, as available ...

Genetic basis of resistance in eucalyptus spp. pathosystems

Science.gov (United States)

Acelino Couto Alfenas; Lucio Mauro da Silva Guimaraes; Marcos Deon Vilela Resende

2012-01-01

Eucalyptus is the most widely planted hardwood crop in world-wide tropical and subtropical regions because of its high growth rate, broad adaptability, and multipurpose wood properties. Until the 1970s, the Eucalyptus plantations in Brazil were practically disease free. However, plantations have continued to expand into warmer...

BASIC DENSITY AND RETRACTIBILITY OF WOOD CLONES OF THREE Eucalyptus SPECIES

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Djeison Cesar Batista

2010-12-01

Full Text Available Among the planted forests that supply the national wood industry, the genus Eucalyptus has become the most important, due to its fast growth, ease of large scale planting and variability of wood use. The generation of new hybrids and clones is a reality in the national practice of silviculture, and there is great interest currently in finding genetic improvements, mainly for higher volumetric gains and resistance in rough conditions of planting, such as pest attacks, periods of drought, low soil fertility, etc. The basic density is one of the most important physical properties of wood because it relates directly to other properties, including the anisotropic shrinkage. Such properties indicate the rational use of a species in a certain wood product. The aim of this work was to determine the basic density and the anisotropic shrinkage of five wood clones for each one of the following species: Eucalyptus saligna, Eucalyptus grandis and Eucalyptus dunnii. Clone 5 of Eucalyptus saligna presented the highest basic density (0.56 g/cm³ and was the most dimensionally instable. Of all the species, there was only a direct relation among basic density, maximum volumetric shrinkage and maximum volumetric shrinkage coefficient in this clone. Considering maximum volumetric shrinkage as the criterion, clone 3 was the most dimensionally stable. Clones 2 and 3 of Eucalyptus grandis presented the least and the highest basic density, respectively, with 0.40 and 0.49 g/cm³. It was not possible to distinguish among clones 1, 3 and 4 in terms of dimensional stability, and considering maximum volumetric shrinkage coefficient as the criterion, clone 5 was the most dimensionally instable. For Eucalyptus saligna and Eucalyptus dunnii it was not possible to distinguish which clone presented the least basic density. Clone 3 of Eucalyptus dunnii presented the highest basic density (0.65 g/cm³ and considering maximum volumetric shrinkage coefficient as the criterion, it

A high-density Diversity Arrays Technology (DArT microarray for genome-wide genotyping in Eucalyptus

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Myburg Alexander A

2010-06-01

Full Text Available Abstract Background A number of molecular marker technologies have allowed important advances in the understanding of the genetics and evolution of Eucalyptus, a genus that includes over 700 species, some of which are used worldwide in plantation forestry. Nevertheless, the average marker density achieved with current technologies remains at the level of a few hundred markers per population. Furthermore, the transferability of markers produced with most existing technology across species and pedigrees is usually very limited. High throughput, combined with wide genome coverage and high transferability are necessary to increase the resolution, speed and utility of molecular marker technology in eucalypts. We report the development of a high-density DArT genome profiling resource and demonstrate its potential for genome-wide diversity analysis and linkage mapping in several species of Eucalyptus. Findings After testing several genome complexity reduction methods we identified the PstI/TaqI method as the most effective for Eucalyptus and developed 18 genomic libraries from PstI/TaqI representations of 64 different Eucalyptus species. A total of 23,808 cloned DNA fragments were screened and 13,300 (56% were found to be polymorphic among 284 individuals. After a redundancy analysis, 6,528 markers were selected for the operational array and these were supplemented with 1,152 additional clones taken from a library made from the E. grandis tree whose genome has been sequenced. Performance validation for diversity studies revealed 4,752 polymorphic markers among 174 individuals. Additionally, 5,013 markers showed segregation when screened using six inter-specific mapping pedigrees, with an average of 2,211 polymorphic markers per pedigree and a minimum of 859 polymorphic markers that were shared between any two pedigrees. Conclusions This operational DArT array will deliver 1,000-2,000 polymorphic markers for linkage mapping in most eucalypt pedigrees

mESAdb: microRNA expression and sequence analysis database.

Science.gov (United States)

Kaya, Koray D; Karakülah, Gökhan; Yakicier, Cengiz M; Acar, Aybar C; Konu, Ozlen

2011-01-01

microRNA expression and sequence analysis database (http://konulab.fen.bilkent.edu.tr/mirna/) (mESAdb) is a regularly updated database for the multivariate analysis of sequences and expression of microRNAs from multiple taxa. mESAdb is modular and has a user interface implemented in PHP and JavaScript and coupled with statistical analysis and visualization packages written for the R language. The database primarily comprises mature microRNA sequences and their target data, along with selected human, mouse and zebrafish expression data sets. mESAdb analysis modules allow (i) mining of microRNA expression data sets for subsets of microRNAs selected manually or by motif; (ii) pair-wise multivariate analysis of expression data sets within and between taxa; and (iii) association of microRNA subsets with annotation databases, HUGE Navigator, KEGG and GO. The use of existing and customized R packages facilitates future addition of data sets and analysis tools. Furthermore, the ability to upload and analyze user-specified data sets makes mESAdb an interactive and expandable analysis tool for microRNA sequence and expression data.

Streptomyces rhizobacteria modulate the secondary metabolism of Eucalyptus plants.

Science.gov (United States)

Salla, Tamiris Daros; da Silva, Ramos; Astarita, Leandro Vieira; Santarém, Eliane Romanato

2014-12-01

The genus Eucalyptus comprises economically important species, such as Eucalyptus grandis and Eucalyptus globulus, used especially as a raw material in many industrial sectors. Species of Eucalyptus are very susceptible to pathogens, mainly fungi, which leads to mortality of plant cuttings in rooting phase. One alternative to promote plant health and development is the potential use of microorganisms that act as agents for biological control, such as plant growth-promoting rhizobacteria (PGPR). Rhizobacteria Streptomyces spp have been considered as PGPR. This study aimed at selecting strains of Streptomyces with ability to promote plant growth and modulate secondary metabolism of E. grandis and E. globulus in vitro plants. The experiments assessed the development of plants (root number and length), changes in key enzymes in plant defense (polyphenol oxidase and peroxidase) and induction of secondary compounds(total phenolic and quercetinic flavonoid fraction). The isolate Streptomyces PM9 showed highest production of indol-3-acetic acid and the best potential for root induction. Treatment of Eucalyptus roots with Streptomyces PM9 caused alterations in enzymes activities during the period of co-cultivation (1-15 days), as well as in the levels of phenolic compounds and flavonoids. Shoots also showed alteration in the secondary metabolism, suggesting induced systemic response. The ability of Streptomyces sp. PM9 on promoting root growth, through production of IAA, and possible role on modulation of secondary metabolism of Eucalyptus plants characterizes this isolate as PGPR and indicates its potential use as a biological control in forestry.

Diseases on Eucalyptus species in Zimbabwean plantations and ...

African Journals Online (AJOL)

Zimbabwe embarked on planting Eucalyptus species in the early 1900s. Based on a robust breeding programme, it has become a major source of seed for other countries in and outside Africa. Tree health surveys conducted on Eucalyptus in some east and southern African countries over the past two decades have ...

Chemical composition and fumigant toxicity of the essential oils from 16 species of Eucalyptus against Haematobia irritans (Diptera: Muscidae) adults

OpenAIRE

Juan, Laura W.; Lucía Mulas, Alejandro; Zerba, Eduardo N.; Harrand, Leonel; Marco, Martín; Masuh, Hector M.

2011-01-01

Oils extracted from various species of Eucalyptus (Eucalyptus badjensis Beuzev & Welch, Eucalyptus badjensis x Eucalyptus nitens, Eucalyptus benthamii variety dorrigoensis Maiden & Cambage, Eucalyptus botryoides Smith, Eucalyptus dalrympleana Maiden, Eucalyptus fastigata Deane & Maiden, Eucalyptus nobilis L.A.S. Johnson & K. D. Hill, Eucalyptus polybractea R. Baker, Eucalyptus radiata ssp. radiata Sieber ex Spreng, Eucalyptus resinifera Smith, Eucalyptus robertsonii Blakely, Eucalyptus rubida...

Control of Passion Fruit Fungal Diseases Using Essential Oils Extracted from Rosemary (Rosmarinus officinalis) and Eucalyptus (Eucalyptus agglomerata) in Egerton University Main Campus Njoro, Kenya.

Science.gov (United States)

Waithaka, Paul Njenga; Gathuru, Eliud Mugu; Githaiga, Benson Muriuki; Kimani, Salome Nduta

2017-01-01

Growth of fruits which form an important part of human diet has been jeopardized by the many fungal diseases that are present today. This study was conceived to isolate the most common fungal pathogens in passion fruits. Fungi were isolated using potato dextrose agar in addition to characterization using morphological, cultural, and biochemical means. Extraction of essential oils from rosemary ( Rosmarinus officinalis ) and eucalyptus ( Eucalyptus agglomerata ) was done. Before carrying the sensitivity test of essential oils to the fungal isolates, constituents of the essential oils were determined. The most common fungal pathogens isolated from passion fruits were Alternaria spp. (45%), Fusarium spp. (22%), Colletotrichum spp. (17%), and Penicillium spp. (16%). There was a relationship between heating time and yield of essential oils in rosemary ( r = 0.99) and eucalyptus ( r = 0.99). Conversely, there was no significant difference in the amount of essential oils produced by rosemary and eucalyptus ( P = 0.08). Furthermore, there was a significant difference in growth inhibition of the fungal pathogens between essential oils from rosemary and eucalyptus ( P = 0.000438). Fungal pathogens isolated from passion fruits can be controlled using essential oils from rosemary and eucalyptus. The oils need to be produced in large scale.

Evaluation of bleachability on pine and eucalyptus kraft pulps

Directory of Open Access Journals (Sweden)

Marcela Freitas Andrade

2013-09-01

Full Text Available In recent decades, the pulp industry has been changing and improving its manufacturing processes in order to enhance production capacity, product quality and environmental performance. The aim of this study was to evaluate the bleachability effect on the efficient washing and alkaline leaching in eucalyptus and pine Kraft pulps using three different bleaching sequences: AD(EPD, A/D(EPDP and DHT(EPDP. This study was carried out in two stages. In the first part, the optimum conditions for pulp bleaching in order to achieve a brightness of 90% ISO were established. The second step was a comparative study between the pulps that received alkaline leaching and efficient washing with reference pulp (without treatment. The brightness, viscosity, kappa number and HexA in pulp were analyzed. The three sequences studied reached the desired brightness, but the sequence AD(EPD produced a lower reagent consumption for the same brightness. In the three sequences studied, the efficient washing of the pulp after oxygen delignification has contributed significantly to the removal of dissolved organic and inorganic materials in the pulp and the alkaline leaching decreased significantly the pulp kappa number due to a higher pulp delignification and bleachability.

Biologia do psilídeo-de-concha Glycaspis brimblecombei Moore (Hemiptera, Psyllidae em Eucalyptus spp. Red gum lerp psyllid Glycaspis brimblecombei Moore (Hemiptera, Psylidae biology in Eucalyptus spp.

Directory of Open Access Journals (Sweden)

Daniela Cristina Firmino-Winckler

2009-01-01

Full Text Available Biologia do psilídeo-de-concha Glycaspis brimblecombei Moore (Hemiptera, Psyllidae em Eucalyptus spp.. Glycaspis brimblecombei Moore também conhecido por psilídeo-de-concha, se caracteriza por ser uma espécie específica ao gênero Eucalyptus L'Her. Este trabalho teve por objetivo determinar o ciclo biológico de G. brimblecombei em Eucalyptus spp. O trabalho foi conduzido em câmara climatizada (BOD, sob a temperatura de 26 °C e fotofase de 12 horas. As espécies de Eucalyptus utilizadas para o experimento foram: Eucalyptus camaldulensis, E. tereticornis, E. urophylla, E. grandis, Corymbia citriodora e um híbrido de E. grandis x E. urophylla ('urograndis'. Inicialmente foram utilizados 100 repetições (ninfas tratamento (espécies de Eucalyptus. As avaliações foram diárias. Os parâmetros biológicos avaliados foram a duração e viabilidade do estágio ninfal, longevidade dos adultos, número de posturas/fêmea, duração do período embrionário, número e viabilidade ovos, longevidade dos adultos e duração do ciclo total. Os resultados obtidos demonstraram que salvo C. citriodora que apresentou ser letal ao desenvolvimento ninfal de G. brimblecombei as demais espécies de Eucalyptus testadas oferecem condições ao desenvolvimento biológico deste psilídeo, sendo que neste trabalho E. camaldulensis mostrou-se a mais adequada.Glycaspis brimblecombei Moore, also known as red gum lerp psyllid, is characterized to be specific to the genus Eucalyptus. This work aimed to evaluate G. brimblecombei biological cycle in Eucalyptus spp. The work was accomplished in acclimatized chamber (BOD, with temperature of 26 °C and photophase of 12 hours. Eucalyptus species used in this study were: Eucalyptus camaldulensis, E. tereticornis, E. urophylla, E. grandis, Corymbia citriodora and E grandis x E. urophylla hybrid ('urograndis'. Initially 100 replications (nymphs per treatment (Eucalyptus species were prepared. The evaluations were daily and

Label-Free Quantitative Proteomic Analysis of Puccinia psidii Uredospores Reveals Differences of Fungal Populations Infecting Eucalyptus and Guava.

Science.gov (United States)

Quecine, Maria Carolina; Leite, Thiago Falda; Bini, Andressa Peres; Regiani, Thais; Franceschini, Lívia Maria; Budzinski, Ilara Gabriela Frasson; Marques, Felipe Garbelini; Labate, Mônica Teresa Veneziano; Guidetti-Gonzalez, Simone; Moon, David Henry; Labate, Carlos Alberto

2016-01-01

Puccinia psidii sensu lato (s.l.) is the causal agent of eucalyptus and guava rust, but it also attacks a wide range of plant species from the myrtle family, resulting in a significant genetic and physiological variability among populations accessed from different hosts. The uredospores are crucial to P. psidii dissemination in the field. Although they are important for the fungal pathogenesis, their molecular characterization has been poorly studied. In this work, we report the first in-depth proteomic analysis of P. psidii s.l. uredospores from two contrasting populations: guava fruits (PpGuava) and eucalyptus leaves (PpEucalyptus). NanoUPLC-MSE was used to generate peptide spectra that were matched to the UniProt Puccinia genera sequences (UniProt database) resulting in the first proteomic analysis of the phytopathogenic fungus P. psidii. Three hundred and fourty proteins were detected and quantified using Label free proteomics. A significant number of unique proteins were found for each sample, others were significantly more or less abundant, according to the fungal populations. In PpGuava population, many proteins correlated with fungal virulence, such as malate dehydrogenase, proteossomes subunits, enolases and others were increased. On the other hand, PpEucalyptus proteins involved in biogenesis, protein folding and translocation were increased, supporting the physiological variability of the fungal populations according to their protein reservoirs and specific host interaction strategies.

Label-Free Quantitative Proteomic Analysis of Puccinia psidii Uredospores Reveals Differences of Fungal Populations Infecting Eucalyptus and Guava.

Directory of Open Access Journals (Sweden)

Maria Carolina Quecine

Full Text Available Puccinia psidii sensu lato (s.l. is the causal agent of eucalyptus and guava rust, but it also attacks a wide range of plant species from the myrtle family, resulting in a significant genetic and physiological variability among populations accessed from different hosts. The uredospores are crucial to P. psidii dissemination in the field. Although they are important for the fungal pathogenesis, their molecular characterization has been poorly studied. In this work, we report the first in-depth proteomic analysis of P. psidii s.l. uredospores from two contrasting populations: guava fruits (PpGuava and eucalyptus leaves (PpEucalyptus. NanoUPLC-MSE was used to generate peptide spectra that were matched to the UniProt Puccinia genera sequences (UniProt database resulting in the first proteomic analysis of the phytopathogenic fungus P. psidii. Three hundred and fourty proteins were detected and quantified using Label free proteomics. A significant number of unique proteins were found for each sample, others were significantly more or less abundant, according to the fungal populations. In PpGuava population, many proteins correlated with fungal virulence, such as malate dehydrogenase, proteossomes subunits, enolases and others were increased. On the other hand, PpEucalyptus proteins involved in biogenesis, protein folding and translocation were increased, supporting the physiological variability of the fungal populations according to their protein reservoirs and specific host interaction strategies.

Properties of particleboards fabricated with eucalyptus (Eucalyptus urophylla, parica (Schizolobium amazonicum and vassoura (Sida spp. particles

Directory of Open Access Journals (Sweden)

Juliana Jerásio Bianche

2012-12-01

Full Text Available The genus Sida may become a promising alternative source for the production of particleboards. Nowadays it is used for manufacturing ropes due to the quality of its fibers, however, there is no research relating the production of particleboards using this lignocelluloses material. This study aimed to evaluate the effect of eucalyptus (Eucalyptus urophylla, paricá (Schizolobium amazonicum and vassoura (Sida spp. on the physical and mechanical properties of particleboard. Particleboard contained 25, 50, 75 and 100% of eucalyptus and paricá or eucalytus and vassoura or paricá an vassoura were fabricated. Two (6% and 8% amounts of urea-formaldehyde adhesive were used. The physical and mechanical properties were determined according to NBR / ABNT 14810-3 (ASSOCIAÇÃO BRASILEIRA DE NORMAS TÉCNICAS - ABNT, 2002. It was observed that increase in resin content in the improved some physical and mechanical properties. It was concluded that the amount of vassoura particles on panels had different effects depending on the species used. The increase in the percentage of vassoura particles in the Eucalyptus panels did not affect the internal bond, screw withdrawal and hardness. Increasing the percentage of vassoura particles on the panels produced with paricá did not affect its hardness and resistance to screw withdrawal. The panels produced with vassoura particle absorbed more water and, consequently, increased the thickness swelling, and therefore is not recommended for use in environments with high humidity. It was concluded that the genus Sida, in general, has potential for particleboard production.

LOX: Inferring level of expression from diverse methods of census sequencing

KAUST Repository

Zhang, Zhang

2010-06-10

Summary: We present LOX (Level Of eXpression) that estimates the Level Of gene eXpression from high-throughput-expressed sequence datasets with multiple treatments or samples. Unlike most analyses, LOX incorporates a gene bias model that facilitates integration of diverse transcriptomic sequencing data that arises when transcriptomic data have been produced using diverse experimental methodologies. LOX integrates overall sequence count tallies normalized by total expressed sequence count to provide expression levels for each gene relative to all treatments as well as Bayesian credible intervals. © The Author 2010. Published by Oxford University Press. All rights reserved.

LOX: Inferring level of expression from diverse methods of census sequencing

KAUST Repository

Zhang, Zhang; Ló pez-Girá ldez, Francesc Francisco; Townsend, Jeffrey P.

2010-01-01

Summary: We present LOX (Level Of eXpression) that estimates the Level Of gene eXpression from high-throughput-expressed sequence datasets with multiple treatments or samples. Unlike most analyses, LOX incorporates a gene bias model that facilitates integration of diverse transcriptomic sequencing data that arises when transcriptomic data have been produced using diverse experimental methodologies. LOX integrates overall sequence count tallies normalized by total expressed sequence count to provide expression levels for each gene relative to all treatments as well as Bayesian credible intervals. © The Author 2010. Published by Oxford University Press. All rights reserved.

USE OF TREND IMPACT ANALYSIS AFFECTS PROJECTIONS OF EUCALYPTUS CULTIVATION IN BRAZIL

Directory of Open Access Journals (Sweden)

Samir Lotfi

2009-10-01

Full Text Available Eucalyptus forestry is an important source of competitive advantage for Brazil and, since eucalyptus is a basic raw material for industrial segments that are undergoing great expansion, monitoring the growth rate of cultivated area is increasingly relevant.This study resorted to Trend Impact Analysis (TIA to forecast the planting of eucalyptus in Brazil’s reforested areas, adjusting the linear regression of historical data in the light of three events that were under way or that will probably influence the trend: timber funds, the world financial crisis and Biomass to Liquid (BTL technology.The results allow one to infer that, in the short term, eucalyptus cultivation will expand at a rate similar to that of the linear curve, adversely affected by the world crisis and positively affected by timber funds.By 2016, however, the expansion of eucalyptus plantations is expected, largely because of the commercial scale of BTL technology.Key words: Trend Impact Analysis. Eucalyptus. Future Studies.

Estimativa do tempo de vaporização de toras de Eucalyptus grandis Steaming times estimates for Eucalyptus grandis logs

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Fred Willians Calonego

2006-06-01

Full Text Available O objetivo deste estudo foi adequar o modelo geral de determinação do tempo de vaporização de toras, proposto por Steinhagen et al. (1980, para a madeira de Eucalyptus grandis. Para tanto, foram coletadas toras de 20 a The aim this study was to adjust the general model for determining log steaming time, proposed by Steinhagen et al. (1980, for Eucalyptus grandis wood. In order to do so, logs with diameter from 20 to <25, 25 to <30 and 30 to <35 cm were collected from 14 trees of Eucalyptus grandis derived from the `Horto Florestal' nursery, Manduri, São Paulo. A thermocouple was inserted into each log near its center. The logs were steamed during 20 hours at 90ºC and 100% relative humidity. A data logger recorded the temperatures during the thermal treatment. It was concluded that the Steinhagen et al. (1980 model cannot be directly used for this species in study and corrections factors are proposed for the utilization of the general model for log steaming time, developed by Steinhagen et al. (1980, for Eucalyptus grandis wood.

Production cost of biomasses from eucalyptus and elefant grass for energy

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Laurent Marie Roger Quéno

2011-09-01

Full Text Available This work established the unit energy cost generated from biomass of eucalyptus (Eucalyptus sp. and elephant grass (Pennisetum sp. and applied a sensitivity analysis to verify the influences of factors such as the silviculture of eucalyptus, production volume of each species, the cost of land and the interest rate. It was shown that the treatment of eucalyptus in very short rotation of 2 years with reform of stand every 6 years has a average cost of production higher than the traditional treatment of short rotation of 6 years with reform only at the age of 18. It was also observed that eucalyptus has a Production Cost on average of R$ 4,41 /Gj, lower than the elephant grass which is on average of R$ 5,44/Gj, which however has a higher annual capacity of dry matter production. The elephant grass has the possibility to compete with eucalyptus when a set of conditions is met: discount rate higher than or equal to 8%, High price of land, and elephant grass high volume production, greater than or equal to 35 tonnes of dry matter per hectare and year.

Predicting tissue-specific expressions based on sequence characteristics

KAUST Repository

Paik, Hyojung; Ryu, Tae Woo; Heo, Hyoungsam; Seo, Seungwon; Lee, Doheon; Hur, Cheolgoo

2011-01-01

In multicellular organisms, including humans, understanding expression specificity at the tissue level is essential for interpreting protein function, such as tissue differentiation. We developed a prediction approach via generated sequence features from overrepresented patterns in housekeeping (HK) and tissue-specific (TS) genes to classify TS expression in humans. Using TS domains and transcriptional factor binding sites (TFBSs), sequence characteristics were used as indices of expressed tissues in a Random Forest algorithm by scoring exclusive patterns considering the biological intuition; TFBSs regulate gene expression, and the domains reflect the functional specificity of a TS gene. Our proposed approach displayed better performance than previous attempts and was validated using computational and experimental methods.

Predicting tissue-specific expressions based on sequence characteristics

KAUST Repository

Paik, Hyojung

2011-04-30

In multicellular organisms, including humans, understanding expression specificity at the tissue level is essential for interpreting protein function, such as tissue differentiation. We developed a prediction approach via generated sequence features from overrepresented patterns in housekeeping (HK) and tissue-specific (TS) genes to classify TS expression in humans. Using TS domains and transcriptional factor binding sites (TFBSs), sequence characteristics were used as indices of expressed tissues in a Random Forest algorithm by scoring exclusive patterns considering the biological intuition; TFBSs regulate gene expression, and the domains reflect the functional specificity of a TS gene. Our proposed approach displayed better performance than previous attempts and was validated using computational and experimental methods.

WEED CONTROL AND BORON NUTRITION ON Eucalyptus IN SILVOPASTORAL SYSTEM

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Alexandre Magno Brighenti

2015-04-01

Full Text Available The objective of this study was to evaluate the control of weeds in the rows of eucalyptus (Eucalyptus urograndis with herbicides applied singly or combined with boron (B, as well as, the response of Eucalyptus plants to this micronutrient. The experiments were carried out in a split-plot with randomized complete block design, with three replicates. Six treatments were applied to the plots: (i weeded control, (ii control without weeding, (iii glyphosate (1080 g ae ha-1 + chlorimuron-ethyl (10 g ai ha-1 + 0.05% v / v mineral oil, (iv glyphosate (1080 g ae  ha-1 + isoxaflutole (112.5 g ai ha-1,  (v glyphosate (1080 g ae ha-1 and  (vi oxyfluorfen (480 g ai ha-1. The sub-plots consisted of the absence or presence of 4 kg of boric acid (H3BO3 - 17% B in 100 L of water. The addition of boric acid in the solution containing the herbicides did not affect the weed control. There was an increase in boron content in the soil and consequently an increase in the boron levels in the eucalyptus leaves. The combined application of herbicides plus boric acid is perfectly suitable for preventing dry of the pointer on eucalyptus plants. Keywords: Eucalyptus urograndis; chemical control; herbicides; micronutrients; Urochloa decumbens.

Eucalyptus Tree: A Potential Source of Cryptococcus neoformans in Egyptian Environment

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Mahmoud Elhariri

2016-01-01

Full Text Available In Egypt, the River Red Gum (Eucalyptus camaldulensis is a well-known tree and is highly appreciated by the rural and urban dwellers. The role of Eucalyptus trees in the ecology of Cryptococcus neoformans is documented worldwide. The aim of this survey was to show the prevalence of C. neoformans during the flowering season of E. camaldulensis at the Delta region in Egypt. Three hundred and eleven samples out of two hundred Eucalyptus trees, including leaves, flowers, and woody trunks, were collected from four governorates in the Delta region. Thirteen isolates of C. neoformans were recovered from Eucalyptus tree samples (4.2%. Molecular identification of C. neoformans was done by capsular gene specific primer CAP64 and serotype identification was done depending on LAC1 gene. This study represents an update on the ecology of C. neoformans associated with Eucalyptus tree in Egyptian environment.

Complex linkage between soil, soil water, atmosphere and Eucalyptus Plantations

Science.gov (United States)

Shukla, C.; Tiwari, K. N.

2017-12-01

Eucalyptus is most widely planted genus grown in waste land of eastern region of India to meet the pulp industry requirements. Sustainability of these plantations is of concern because in spite of higher demand water and nutrients of plantations, they are mostly planted on low-fertility soils. This study has been conducted to quantify effect of 25 years old, a fully established eucalyptus plantations on i.) Alteration in physico-chemical and hydrological properties of soil of eucalyptus plantation in comparison to soil of natural grassland and ii.) Spatio-temporal variation in soil moisture under eucalyptus plantations. Soil physico-chemical properties of two adjacent plots covered with eucatuptus and natural grasses were analyzed for three consecutive depths (i.e. 0-30 cm, 30-60 cm and 60-90 cm) with five replications in each plot. Soil infiltration rate and saturated hydraulic conductivity (Ks) were measured in-situ to incorporate the influence of macro porosity caused due to roots of plantations. Daily soil moisture at an interval of 10 cm upto 160 cm depth with 3 replications and Leaf Area Index (LAI) at an interval of 15 days with 5 replications were recorded over the year. Significant variations found at level of 0.05 between soil properties of eucalyptus and natural grass land confirm the effect of plantations on soil properties. Comparative results of soil properties show significant alteration in soil texture such as percent of sand, organic matter and Ks found more by 20%, 9% and 22% respectively in eucalyptus plot as compare to natural grass land. Available soil moisture (ASM) was found constantly minimum in top soil excluding rainy season indicate upward movement of water and nutrients during dry season. Seasonal variation in temperature (T), relative humidity (RH) and leaf area index (LAI) influenced the soil moisture extraction phenomenon. This study clearly stated the impact of long term establishment of eucalyptus plantations make considerable

Energy evaluation of the Eucalyptus globulus and the Eucalyptus nitens in the north of Spain (Cantabria)

International Nuclear Information System (INIS)

Perez, S.; Renedo, C.J.; Ortiz, A.; Manana, M.; Silio, D.

2006-01-01

This work studied the potential use of the waste from Eucalyptus globulus and Eucalyptus nitens as energy crops, evaluating young and adult stages of both in all four seasons of the year with different moisture contents. The study was carried out made in Cantabria (North coast of Spain), located at latitude 43 o 28'N, and longitude 3 o 48'W. In this region, 29,513ha are dedicated to the growth of Eucalyptus, with about 80% E. globulus, and 20% E. nitens. Six different plantations have been analyzed and their bioclimatic diagrams determined. After the collection of samples the potential energy of every sample was obtained, they were weighed, analyzed and burned, giving a mean net calorific value of 17,384 and 17,927kJ/kg in the adult stage of E. globulus and E. nitens, respectively. The results for the young stage of both species were 17,708 and 18,670kJ/kg. Moisture content in the samples has a great influence on power production. Finally, the economic and environmental consequences of these crop species for the region of Cantabria were analyzed. (author)

Eucalyptus: an open-source cloud computing infrastructure

International Nuclear Information System (INIS)

Nurmi, Daniel; Wolski, Rich; Grzegorczyk, Chris; Obertelli, Graziano; Soman, Sunil; Youseff, Lamia; Zagorodnov, Dmitrii

2009-01-01

Utility computing, elastic computing, and cloud computing are all terms that refer to the concept of dynamically provisioning processing time and storage space from a ubiquitous 'cloud' of computational resources. Such systems allow users to acquire and release the resources on demand and provide ready access to data from processing elements, while relegating the physical location and exact parameters of the resources. Over the past few years, such systems have become increasingly popular, but nearly all current cloud computing offerings are either proprietary or depend upon software infrastructure that is invisible to the research community. In this work, we present Eucalyptus, an open-source software implementation of cloud computing that utilizes compute resources that are typically available to researchers, such as clusters and workstation farms. In order to foster community research exploration of cloud computing systems, the design of Eucalyptus emphasizes modularity, allowing researchers to experiment with their own security, scalability, scheduling, and interface implementations. In this paper, we outline the design of Eucalyptus, describe our own implementations of the modular system components, and provide results from experiments that measure performance and scalability of a Eucalyptus installation currently deployed for public use. The main contribution of our work is the presentation of the first research-oriented open-source cloud computing system focused on enabling methodical investigations into the programming, administration, and deployment of systems exploring this novel distributed computing model.

Estimating foliar nitrogen in Eucalyptus using vegetation indexes

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Luiz Felipe Ramalho de Oliveira

Full Text Available ABSTRACT Nitrogen (N has commonly been applied in Eucalyptus stands in Brazil and it has a direct relation with biomass production and chlorophyll content. Foliar N concentrations are used to diagnose soil and plant fertility levels and to develop N fertilizer application rates. Normally, foliar N is obtained using destructive methods, but indirect analyses using Vegetation Indexes (VIs may be possible. The aim of this work was to evaluate VIs to estimate foliar N concentration in three Eucalyptus clones. Lower crown leaves of three clonal Eucalyptus plantations (25 months old were classified into five color patterns using the Munsell Plant Tissue Color Chart. For each color, N concentration was determined by the Kjeldahl method and foliar reflectance was measured using a CI-710 Miniature Leaf Spectrometer. Foliar reflectance data were used to obtain the VIs and the VIs were used to estimate N concentrations. In the visible region, the relationship between N concentration and reflectance percentage was negative. The highest correlations between VIs and N concentrations were obtained by the Inflection Point Position (IPP, r = 0.97, Normalized Difference Red-Edge (reNDVI, r = 0.97 and Modified Red-Edge Normalized Difference Vegetation Index (mNDI, r = 0.97. Vegetation indexes on the red edge region provided the most accurate estimates of foliar N concentration. The reNDVI index provided the best N concentration estimates in leaves of different colors of Eucalyptus urophylla × grandis and Eucalyptus urophylla × urophylla (R2 = 0.97 and RMSE = 0.91 g kg−1.

Genome-wide variation in recombination rate in Eucalyptus.

Science.gov (United States)

Gion, Jean-Marc; Hudson, Corey J; Lesur, Isabelle; Vaillancourt, René E; Potts, Brad M; Freeman, Jules S

2016-08-09

Meiotic recombination is a fundamental evolutionary process. It not only generates diversity, but influences the efficacy of natural selection and genome evolution. There can be significant heterogeneity in recombination rates within and between species, however this variation is not well understood outside of a few model taxa, particularly in forest trees. Eucalypts are forest trees of global economic importance, and dominate many Australian ecosystems. We studied recombination rate in Eucalyptus globulus using genetic linkage maps constructed in 10 unrelated individuals, and markers anchored to the Eucalyptus reference genome. This experimental design provided the replication to study whether recombination rate varied between individuals and chromosomes, and allowed us to study the genomic attributes and population genetic parameters correlated with this variation. Recombination rate varied significantly between individuals (range = 2.71 to 3.51 centimorgans/megabase [cM/Mb]), but was not significantly influenced by sex or cross type (F1 vs. F2). Significant differences in recombination rate between chromosomes were also evident (range = 1.98 to 3.81 cM/Mb), beyond those which were due to variation in chromosome size. Variation in chromosomal recombination rate was significantly correlated with gene density (r = 0.94), GC content (r = 0.90), and the number of tandem duplicated genes (r = -0.72) per chromosome. Notably, chromosome level recombination rate was also negatively correlated with the average genetic diversity across six species from an independent set of samples (r = -0.75). The correlations with genomic attributes are consistent with findings in other taxa, however, the direction of the correlation between diversity and recombination rate is opposite to that commonly observed. We argue this is likely to reflect the interaction of selection and specific genome architecture of Eucalyptus. Interestingly, the differences amongst

Occurrence of proscopiidae in Eucalyptus spp.: analysis of the infestations and spatial distribution

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Alexandre dos Santos

2014-12-01

Full Text Available The objective of this research was to report the occurrence of proscopiidae and to quantify its infestation and spatial distribution in one experimental plantation of eucalypt clones. The study was conducted in an experimental field with eucalypt hybrids of Eucalyptus urophylla x Eucalyptus grandis (clones GG100, Eucalyptus urophylla x Eucalyptus grandis (H13 and of Eucalyptus urophylla x Eucalyptus camaldulensis (VM01. The plantation was established in three continuous blocks with 512 plants with 3 m x 2 m, in Cáceres municipality, Mato Grosso State, Brazil. Infestation of proscopiidae insects was detected two months after planting . The insects were collected for identification. The attacked trees were geo-referenced and the injuries were quantified. The spatial pattern of proscopiidae he attack was determinated using the location information of the damaged plants, which have been submitted to a quadrats analyses using Morisita and binomial dispersion indexes. All the collected insects have been identified as Tetanorhynchus smithi Rehn, 1904 (Orthoptera, Proscopiidae. The infestation differed significantly among the three eucalypts clones and aggregated spatial pattern of attack was observed. This is the first report of this species of proscopiidae in eucalyptus in Mato Grosso State.

Energy, chemicals and carbon: future options for the Eucalyptus ...

African Journals Online (AJOL)

This paper examines the current Eucalyptus value chain and the possible drivers that may impact upon it. The potential consequences of climate change on the growth and yield of Eucalyptus are discussed and the impact of the security of oil reserves and increased costs of fossil-fuel-derived energy and raw materials upon ...

40 CFR 180.1241 - Eucalyptus oil; exemption from the requirement of a tolerance.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Eucalyptus oil; exemption from the... Exemptions From Tolerances § 180.1241 Eucalyptus oil; exemption from the requirement of a tolerance. Time-limited exemptions from the requirement of a tolerance are established for residues of eucalyptus oil on...

Soil microbial community structure and function responses to successive planting of Eucalyptus.

Science.gov (United States)

Chen, Falin; Zheng, Hua; Zhang, Kai; Ouyang, Zhiyun; Li, Huailin; Wu, Bing; Shi, Qian

2013-10-01

Many studies have shown soil degradation after the conversion of native forests to exotic Eucalyptus plantations. However, few studies have investigated the long-term impacts of short-rotation forestry practices on soil microorganisms. The impacts of Eucalyptus successive rotations on soil microbial communities were evaluated by comparing phospholipid fatty acid (PLFA) abundances, compositions, and enzyme activities of native Pinus massoniana plantations and adjacent 1st, 2nd, 3rd, 4th generation Eucalyptus plantations. The conversion from P. massoniana to Eucalyptus plantations significantly decreased soil microbial community size and enzyme activities, and increased microbial physiological stress. However, the PLFA abundances formed "u" shaped quadratic functions with Eucalyptus plantation age. Alternatively, physiological stress biomarkers, the ratios of monounsaturated to saturated fatty acid and Gram+ to Gram- bacteria, formed "n"' shaped quadratic functions, and the ratio of cy17:0 to 16:1omega7c decreased with plantation age. The activities of phenol oxidase, peroxidase, and acid phosphatase increased with Eucalyptus plantation age, while the cellobiohydrolase activity formed "u" shaped quadratic functions. Soil N:P, alkaline hydrolytic nitrogen, soil organic carbon, and understory cover largely explained the variation in PLFA profiles while soil N:P, alkaline hydrolytic nitrogen, and understory cover explained most of the variability in enzyme activity. In conclusion, soil microbial structure and function under Eucalyptus plantations were strongly impacted by plantation age. Most of the changes could be explained by altered soil resource availability and understory cover associated with successive planting of Eucalyptus. Our results highlight the importance of plantation age for assessing the impacts of plantation conversion as well as the importance of reducing disturbance for plantation management.

40 CFR 180.1271 - Eucalyptus oil; exemption from the requirement of a tolerance.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 23 2010-07-01 2010-07-01 false Eucalyptus oil; exemption from the... Exemptions From Tolerances § 180.1271 Eucalyptus oil; exemption from the requirement of a tolerance. An exemption from the requirement of tolerance is established for residues of eucalyptus oil in or on honey...

Eucalyptus: an open-source cloud computing infrastructure

Energy Technology Data Exchange (ETDEWEB)

Nurmi, Daniel; Wolski, Rich; Grzegorczyk, Chris; Obertelli, Graziano; Soman, Sunil; Youseff, Lamia; Zagorodnov, Dmitrii, E-mail: rich@cs.ucsb.ed [Computer Science Department, University of California, Santa Barbara, CA 93106 (United States) and Eucalyptus Systems Inc., 130 Castilian Dr., Goleta, CA 93117 (United States)

2009-07-01

Utility computing, elastic computing, and cloud computing are all terms that refer to the concept of dynamically provisioning processing time and storage space from a ubiquitous 'cloud' of computational resources. Such systems allow users to acquire and release the resources on demand and provide ready access to data from processing elements, while relegating the physical location and exact parameters of the resources. Over the past few years, such systems have become increasingly popular, but nearly all current cloud computing offerings are either proprietary or depend upon software infrastructure that is invisible to the research community. In this work, we present Eucalyptus, an open-source software implementation of cloud computing that utilizes compute resources that are typically available to researchers, such as clusters and workstation farms. In order to foster community research exploration of cloud computing systems, the design of Eucalyptus emphasizes modularity, allowing researchers to experiment with their own security, scalability, scheduling, and interface implementations. In this paper, we outline the design of Eucalyptus, describe our own implementations of the modular system components, and provide results from experiments that measure performance and scalability of a Eucalyptus installation currently deployed for public use. The main contribution of our work is the presentation of the first research-oriented open-source cloud computing system focused on enabling methodical investigations into the programming, administration, and deployment of systems exploring this novel distributed computing model.

FT overexpression induces precocious flowering and normal reproductive development in Eucalyptus.

Science.gov (United States)

Klocko, Amy L; Ma, Cathleen; Robertson, Sarah; Esfandiari, Elahe; Nilsson, Ove; Strauss, Steven H

2016-02-01

Eucalyptus trees are among the most important species for industrial forestry worldwide. However, as with most forest trees, flowering does not begin for one to several years after planting which can limit the rate of conventional and molecular breeding. To speed flowering, we transformed a Eucalyptus grandis × urophylla hybrid (SP7) with a variety of constructs that enable overexpression of FLOWERING LOCUS T (FT). We found that FT expression led to very early flowering, with events showing floral buds within 1-5 months of transplanting to the glasshouse. The most rapid flowering was observed when the cauliflower mosaic virus 35S promoter was used to drive the Arabidopsis thaliana FT gene (AtFT). Early flowering was also observed with AtFT overexpression from a 409S ubiquitin promoter and under heat induction conditions with Populus trichocarpa FT1 (PtFT1) under control of a heat-shock promoter. Early flowering trees grew robustly, but exhibited a highly branched phenotype compared to the strong apical dominance of nonflowering transgenic and control trees. AtFT-induced flowers were morphologically normal and produced viable pollen grains and viable self- and cross-pollinated seeds. Many self-seedlings inherited AtFT and flowered early. FT overexpression-induced flowering in Eucalyptus may be a valuable means for accelerating breeding and genetic studies as the transgene can be easily segregated away in progeny, restoring normal growth and form. © 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Methanol production from Eucalyptus wood chips. Final report

Energy Technology Data Exchange (ETDEWEB)

Fishkind, H.H.

1982-06-01

This feasibility study includes all phases of methanol production from seedling to delivery of finished methanol. The study examines: production of 55 million, high quality, Eucalyptus seedlings through tissue culture; establishment of a Eucalyptus energy plantation on approximately 70,000 acres; engineering for a 100 million gallon-per-day methanol production facility; potential environmental impacts of the whole project; safety and health aspects of producing and using methanol; and development of site specific cost estimates.

Clonal propagation of eucalyptus by tissue culture

Energy Technology Data Exchange (ETDEWEB)

Mehra-Palta, A.

1982-07-01

Multiple adventitious buds were induced on cotyledons, shoot tips and nodal stem segments of Eucalyptus species cultured on a defined nutrient medium supplemented with the cytokinin zeatin and the auxin indole-3-butyric acid (IBA). The adventitious buds could be recycled on cytokinin medium to produce more buds thus providing the possibility of producing large clones from selected genotypes. The adventitious shoots were rooted in auxin medium and some of the resulting propagules were outplanted in the field. These techniques have the potential for use in the genetic improvement of Eucalyptus. (Refs. 15).

Performance of Australian provenances of Eucalyptus grandis and Eucalyptus saligna in Hawaii

Science.gov (United States)

Roger G. Skolmen

1986-01-01

Australian provenances of Eucalyptus grandis and E. saligna were compared at four locations on the island of Hawaii to seek seed sources better than those in current use which were introduced earlier from unrecorded locations in Australia. A broad range of latitude and elevation was represented among the provenances. At all four...

on black ironbark (Eucalyptus

African Journals Online (AJOL)

(Apis meOifera) on black ironbark. (Eucalyptus sideroxylon). B. Buys. Plant Protection Research Institute, Private Bag X5017,. Stellenbosch, 7600 Republic of South Africa. Received May /984; accepted 28 November /986. Black ironbark trees secrete nectar during the night. Argentine ants collected 42% of the nectar before ...

RELATIONSHIP BETWEEN THE ANATOMY AND DRYING IN Eucalyptus grandis X Eucalyptus urophylla WOOD

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Antônio José Vinha Zanuncio

Full Text Available ABSTRACT Drying is an important step to using wood and anatomical characteristics influence this process. Thus, the objective of this work was to evaluate the relationship between anatomy and wood drying. Samples with 2 x 2 x 4 cm were obtained from eight Eucalyptus urophylla x Eucalyptus grandis clones at 1.3 m height to evaluate the anatomy and drying in climate chamber during 15 days. Cell wall fraction was established as the parameter that best correlated with drying, the Pearson correlation coefficient between this parameter and moisture was -0.8986, -0.6580, 0.9216, 0.8743, 0.7131 and 0.8727 for saturated wood, and after 1, 2.5, 5, 10 and 15 days of drying, respectively. The frequency and vessel size, as well as the height and width of the rays showed low relation with wood drying. Wood anatomy, mainly the cell wall fraction, influences moisture losses and should be considered in wood drying programs.

Genetic transformation of Eucalyptus camaldulensis by agrobalistic method

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Evânia Galvão Mendonça

2013-06-01

Full Text Available Eucalyptus stands in the setting of worldwide forestry due to its adaptability, rapid growth, production of high-quality and low cost of wood pulp fibers. The eucalyptus convetional breeding is impaired mainlly by the long life cycle making the genetic transformation systems an important tool for this purpose. However, this system requires in vitro eficient protocols for plant induction, regeneration and seletion, that allow to obtain transgenic plants from the transformed cell groups. The aim of this work was to evaluate the callus formation and to optimize the leaves and callus genetic transformation protocol by using the Agrobacterium tumefaciens system. Concerning callus formation, two different culture media were evaluated: MS medium supplemented with auxin, cytokinin (M1 and the MS medium with reduced nitrogen concentration and supplemented with auxin, cytokinin coconut water (M2. To establish the leave genetic transformation, those were exposed to agrobiolistics technique (gene gun, to tissue injury, and A. tumesfasciens EHA 105 contening the vetor pCambia 3301 (35S::GUS::NOS, for gene transference and to establish the callus transformation thoses were exposed only to A. tumefasciens. For both experiments, the influence of different infection periods was evaluated. The M2 medium provided the best values for callus sizea and fresh and dry weight. The leaves genetic transformation using the agrobiolistics technique was effective, the gus gene transient expression could be observed. No significant differences were obtained in the infection periods (4, 6 and 8 minutes. The callus genetic transformation with A. tumefaciens also promotend the gus gene transient expression on the callus co-cultiveted for 15 e 30 minutes. The transformed callus was transfered to a regeneration and selection medium and transformed plants were obtained.

Volume loss as a tool to assess kiln drying of eucalyptus wood

OpenAIRE

Batista,Djeison Cesar; Klitzke,Ricardo Jorge; Rocha,Márcio Pereira da; Muñiz,Graciela Inez Bolzon de; Batista,Tharcia Ribeiro

2013-01-01

In this study, we aimed to analyze the kiln drying quality of Eucalyptus grandis, Eucalyptus saligna and Eucalyptus dunnii woods with respect to volume loss. Wood from the three species was kiln dried together with the same drying schedule and conditions in a conventional-temperature pilot kiln. Three kinds of volume loss were evaluated: total - from saturated (initial) to machined (final) condition; shrinkage - from saturated to 10% moisture content; and machining - from 10% moisture content...

GENERAL EQUATIONS OF CARBONIZATION OF EUCALYPTUS SPP KINETIC MECHANISMS

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Túlio Jardim Raad

2006-06-01

Full Text Available In the present work, a set of general equations related to kinetic mechanism of wood compound carbonization: hemicelluloses, cellulose and lignin was obtained by Avrami-Eroffev and Arrhenius equations and Thermogravimetry of Eucalyptus cloeziana, Eucalyptus camaldulensis, Corymbia citriodora, Eucalyptus urophylla and Eucalyptus grandis samples, TG-Isothermal and TG-Dynamic. The different thermal stabilities and decomposition temperature bands of those species compounds were applied as strategy to obtain the kinetic parameters: activation energy, exponential factor and reaction order. The kinetic model developed was validated by thermogravimetric curves from carbonization of others biomass such as coconut. The kinetic parameters found were - Hemicelluloses: E=98,6 kJmol, A=3,5x106s-1 n=1,0; - Cellulose: E=182,2 kJmol, A=1,2x1013s-1 n=1,5; - Lignin: E=46,6 kJmol, A=2,01s-1 n=0,41. The set of equations can be implemented in a mathematical model of wood carbonization simulation (with heat and mass transfer equations with the aim of optimizing the control and charcoal process used to produce pig iron.

Effects of an inducible aiiA gene on disease resistance in Eucalyptus urophylla × Eucalyptus grandis.

Science.gov (United States)

Ouyang, L J; Li, L M

2016-08-01

N-acyl-homoserine lactones (AHLs) are metabolites of mostly gram-negative bacteria and are critical signaling molecules in bacterial quorum-sensing systems. At threshold concentrations, AHLs can activate the expression of pathogenic genes and induce diseases. Therefore, reducing AHL concentrations is a key point of disease control in plants. AHL-lactonase, which is expressed by aiiA, is widespread in Bacillus sp and can hydrolyze AHLs. In the present study, we cloned aiiA from Bacillus subtilis by PCR. A plant expression vector of aiiA was constructed and name Pcam-PPP3-aiiA, in which expression of aiiA was controlled by the pathogen-inducible plant promoter PPP3. The recombinant plasmid was transferred into Eucalyptus × urophylla × E. grandis by an Agrobacterium-mediated transformation. PCR and Southern blotting showed that aiiA was successfully integrated into the E. urophylla × E. grandis genome and its expression was induced by Ralstonia solanacearum 12 h after inoculation, as shown by reverse transcription-PCR. The transcription efficacy of aiiA increased 43.88-, 30.65-, and 18.95-fold after inoculation with R. solanacearum, Erwinia carotovora ssp. zeae (Sabet) and Cylindrocladium quinqueseptatum, respectively as shown by RT-real-time PCR. Transgenic E.urophylla × E.grandis expressing the AIIA protein exhibited significantly enhanced disease resistance compared to non-transgenic plants by delaying the onset of wilting and reducing the disease index.

Isolation, sequence identification and tissue expression profile of a ...

African Journals Online (AJOL)

The complete expressed sequence tag (CDS) sequence of Banna mini-pig inbred line (BMI) ribokinase gene (RBKS) was amplified using the reverse transcription-polymerase chain reaction (RT-PCR) based on the conserved sequence information of the cattle or other mammals and known highly homologous swine ESTs.

Clonal differences in log end splitting in Eucalyptus grandis in ...

African Journals Online (AJOL)

This paper discusses the juvenile–mature correlation of log end splitting among Eucalyptus grandis clones from two trials and how differences in splitting relate to differences in wood density, pith-to-bark gradient and growth rate. Two approximately 20-year-old Eucalyptus grandis clonal trials at Bergvliet plantation were ...

Eucalyptus tolerance mechanisms to lanthanum and cerium: subcellular distribution, antioxidant system and thiol pools.

Science.gov (United States)

Shen, Yichang; Zhang, Shirong; Li, Sen; Xu, Xiaoxun; Jia, Yongxia; Gong, Guoshu

2014-12-01

Guanglin 9 (Eucalyptus grandis × Eucalyptus urophlla) and Eucalyptus grandis 5 are two eucalyptus species which have been found to grow normally in soils contaminated with lanthanum and cerium, but the tolerance mechanisms are not clear yet. In this study, a pot experiment was conducted to investigate the tolerance mechanisms of the eucalyptus to lanthanum and cerium. Cell walls stored 45.40-63.44% of the metals under lanthanum or cerium stress. Peroxidase and catalase activities enhanced with increasing soil La or Ce concentrations up to 200 mg kg(-1), while there were no obvious changes in glutathione and ascorbate concentrations. Non-protein thiols concentrations increased with increasing treatment levels up to 200 mg kg(-1), and then decreased. Phytochelatins concentrations continued to increase under La or Ce stress. Therefore, the two eucalyptus species are La and Ce tolerant plants, and the tolerance mechanisms include cell wall deposition, antioxidant system response, and thiol compound synthesis. Copyright © 2014 Elsevier Ltd. All rights reserved.

Species discrimination, population structure and linkage disequilibrium in Eucalyptus camaldulensis and Eucalyptus tereticornis using SSR markers.

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Shanmugapriya Arumugasundaram

Full Text Available Eucalyptus camaldulensis and E. tereticornis are closely related species commonly cultivated for pulp wood in many tropical countries including India. Understanding the genetic structure and linkage disequilibrium (LD existing in these species is essential for the improvement of industrially important traits. Our goal was to evaluate the use of simple sequence repeat (SSR loci for species discrimination, population structure and LD analysis in these species. Investigations were carried out with the most common alleles in 93 accessions belonging to these two species using 62 SSR markers through cross amplification. The polymorphic information content (PIC ranged from 0.44 to 0.93 and 0.36 to 0.93 in E. camaldulensis and E. tereticornis respectively. A clear delineation between the two species was evident based on the analysis of population structure and species-specific alleles. Significant genotypic LD was found in E. camaldulensis, wherein out of 135 significant pairs, 17 pairs showed r(2≥0.1. Similarly, in E. tereticornis, out of 136 significant pairs, 18 pairs showed r(2≥0.1. The extent of LD decayed rapidly showing the significance of association analyses in eucalypts with higher resolution markers. The availability of whole genome sequence for E. grandis and the synteny and co-linearity in the genome of eucalypts, will allow genome-wide genotyping using microsatellites or single nucleotide polymorphims.

Phylogenetic reassessment of Mycosphaerella spp. and their anamorphs occurring on Eucalyptus

NARCIS (Netherlands)

Crous, P.W.; Groenewald, J.Z.; Mansilla, J.P.; Hunter, G.C.; Wingfield, M.J.

2004-01-01

Species of Eucalyptus, mostly native to Australia, are widely planted as exotics in the tropics and Southern Hemisphere. These plantations represent an important source of fuel-wood, structural timber and pulp. Eucalyptus plantations are, however, vulnerable to infection by pathogens, including

Analyses of an expressed sequence tag library from Taenia solium, Cysticerca.

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Jonas Lundström

Full Text Available BACKGROUND: Neurocysticercosis is a disease caused by the oral ingestion of eggs from the human parasitic worm Taenia solium. Although drugs are available they are controversial because of the side effects and poor efficiency. An expressed sequence tag (EST library is a method used to describe the gene expression profile and sequence of mRNA from a specific organism and stage. Such information can be used in order to find new targets for the development of drugs and to get a better understanding of the parasite biology. METHODS AND FINDINGS: Here an EST library consisting of 5760 sequences from the pig cysticerca stage has been constructed. In the library 1650 unique sequences were found and of these, 845 sequences (52% were novel to T. solium and not identified within other EST libraries. Furthermore, 918 sequences (55% were of unknown function. Amongst the 25 most frequently expressed sequences 6 had no relevant similarity to other sequences found in the Genbank NR DNA database. A prediction of putative signal peptides was also performed and 4 among the 25 were found to be predicted with a signal peptide. Proposed vaccine and diagnostic targets T24, Tsol18/HP6 and Tso31d could also be identified among the 25 most frequently expressed. CONCLUSIONS: An EST library has been produced from pig cysticerca and analyzed. More than half of the different ESTs sequenced contained a sequence with no suggested function and 845 novel EST sequences have been identified. The library increases the knowledge about what genes are expressed and to what level. It can also be used to study different areas of research such as drug and diagnostic development together with parasite fitness via e.g. immune modulation.

CANONICAL CORRELATION OF PHYSICAL AND CHEMICAL CHARACTERISTICS OF THE WOOD OF Eucalyptus grandis AND Eucalyptus saligna CLONES

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Paulo Fernando Trugilho

2003-01-01

Full Text Available The analysis of canonical correlation measures the existence and the intensity of the association between two groups of variables. The research objectified to evaluate thecanonical correlation between chemical and physical characteristics and fiber dimensional ofwood of Eucalyptus grandis and Eucalyptus saligna clones, verifying the interdependenceamong the groups of studied variables. The analysis indicated that the canonical correlationswere high and that in two cases the first and second pair were significant at the level of 1% ofprobability. The analysis of canonical correlation showed that the groups are notindependent. The intergroup associations indicated that the wood of high insoluble lignin contentand low ash content is associated with the high radial and tangential contraction and highbasic density wood.

Processed eucalyptus trees as a substrate component for greenhouse crop production

Science.gov (United States)

Fast growing eucalyptus species are selected for commercial plantings worldwide and are harvested for a variety of uses. Eucalyptus plantings in south Florida are harvested for landscape mulch production, yet this material may have potential as a container substrate for horticulture crop production....

Environmental effects on growth phenology of co-occurring Eucalyptus species.

Science.gov (United States)

Rawal, Deepa S; Kasel, Sabine; Keatley, Marie R; Aponte, Cristina; Nitschke, Craig R

2014-05-01

Growth is one of the most important phenological cycles in a plant's life. Higher growth rates increase the competitive ability, survival and recruitment and can provide a measure of a plant's adaptive capacity to climate variability and change. This study identified the growth relationship of six Eucalyptus species to variations in temperature, soil moisture availability, photoperiod length and air humidity over 12 months. The six species represent two naturally co-occurring groups of three species each representing warm-dry and the cool-moist sclerophyll forests, respectively. Warm-dry eucalypts were found to be more tolerant of higher temperatures and lower air humidity than the cool-moist eucalypts. Within groups, species-specific responses were detected with Eucalyptus microcarpa having the widest phenological niche of the warm-dry species, exhibiting greater resistance to high temperature and lower air humidity. Temperature dependent photoperiodic responses were exhibited by all the species except Eucalyptus tricarpa and Eucalyptus sieberi, which were able to maintain growth as photoperiod shortened but temperature requirements were fulfilled. Eucalyptus obliqua exhibited a flexible growth rate and tolerance to moisture limitation which enables it to maintain its growth rate as water availability changes. The wider temperature niche exhibited by E. sieberi compared with E. obliqua and Eucalyptus radiata may improve its competitive ability over these species where winters are warm and moisture does not limit growth. With climate change expected to result in warmer and drier conditions in south-east Australia, the findings of this study suggest all cool-moist species will likely suffer negative effects on growth while the warm-dry species may still maintain current growth rates. Our findings highlight that climate driven shifts in growth phenology will likely occur as climate changes and this may facilitate changes in tree communities by altering inter

Mining microsatellite markers from public expressed sequence tag

Indian Academy of Sciences (India)

Home; Journals; Journal of Genetics; Volume 91; Issue 3. Mining microsatellite markers from public expressed sequence tag sequences for genetic diversity analysis in pomegranate. Zai-Hai Jian Xin-She Liu Jian-Bin Hu Yan-Hui Chen Jian-Can Feng. Research Note Volume 91 Issue 3 December 2012 pp 353-358 ...

Foliar Essential Oil Glands of Eucalyptus Subgenus Eucalyptus (Myrtaceae Are a Rich Source of Flavonoids and Related Non-Volatile Constituents.

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Jason Q D Goodger

Full Text Available The sub-dermal secretory cavities (glands embedded within the leaves of Eucalyptus (Myrtaceae were once thought to be the exclusive repositories of monoterpene and sesquiterpene oils. Recent research has debunked this theory and shown that abundant non-volatile compounds also occur within foliar glands. In particular, glands of four species in subgenus Eucalyptus contain the biologically active flavanone pinocembrin. Pinocembrin shows great promise as a pharmaceutical and is predominantly plant-sourced, so Eucalyptus could be a potential commercial source of such compounds. To explore this we quantified and assessed the purity of pinocembrin in glands of 11 species of E. subg. Eucalyptus using Electro-Spray Ionisation Liquid Chromatography Mass Spectrometry of acetonitrile extracts and Gas Chromatography Mass Spectrometry analyses of hexane extracts of isolated glands which were free from other leaf tissues. Our results showed that the glands of subgenus Eucalyptus contain numerous flavanones that are structurally related to pinocembrin and often present in much greater abundance. The maximum concentration of pinocembrin was 2 mg g-1 dry leaf found in E. stellulata, whereas that of dimethylpinocembrin (5,7-dimethoxyflavanone was 10 mg g-1 in E. oreades and that of pinostrobin (5-hydroxy-7-methoxyflavanone was 12 mg g-1 in E. nitida. We also found that the flavanones are exclusively located within the foliar glands rather than distributed throughout leaf tissues. The flavanones differ from the non-methylated pinocembrin in the degree and positions of methylation. This finding is particularly important given the attractiveness of methylated flavonoids as pharmaceuticals and therapeutics. Another important finding was that glands of some members of the subgenus also contain flavanone O-glucosides and flavanone-β-triketone conjugates. In addition, glands contain free β-triketones, β-triketone heterodimers and chromone C-glucosides. Therefore, the

Foliar Essential Oil Glands of Eucalyptus Subgenus Eucalyptus (Myrtaceae) Are a Rich Source of Flavonoids and Related Non-Volatile Constituents.

Science.gov (United States)

Goodger, Jason Q D; Seneratne, Samiddhi L; Nicolle, Dean; Woodrow, Ian E

2016-01-01

The sub-dermal secretory cavities (glands) embedded within the leaves of Eucalyptus (Myrtaceae) were once thought to be the exclusive repositories of monoterpene and sesquiterpene oils. Recent research has debunked this theory and shown that abundant non-volatile compounds also occur within foliar glands. In particular, glands of four species in subgenus Eucalyptus contain the biologically active flavanone pinocembrin. Pinocembrin shows great promise as a pharmaceutical and is predominantly plant-sourced, so Eucalyptus could be a potential commercial source of such compounds. To explore this we quantified and assessed the purity of pinocembrin in glands of 11 species of E. subg. Eucalyptus using Electro-Spray Ionisation Liquid Chromatography Mass Spectrometry of acetonitrile extracts and Gas Chromatography Mass Spectrometry analyses of hexane extracts of isolated glands which were free from other leaf tissues. Our results showed that the glands of subgenus Eucalyptus contain numerous flavanones that are structurally related to pinocembrin and often present in much greater abundance. The maximum concentration of pinocembrin was 2 mg g-1 dry leaf found in E. stellulata, whereas that of dimethylpinocembrin (5,7-dimethoxyflavanone) was 10 mg g-1 in E. oreades and that of pinostrobin (5-hydroxy-7-methoxyflavanone) was 12 mg g-1 in E. nitida. We also found that the flavanones are exclusively located within the foliar glands rather than distributed throughout leaf tissues. The flavanones differ from the non-methylated pinocembrin in the degree and positions of methylation. This finding is particularly important given the attractiveness of methylated flavonoids as pharmaceuticals and therapeutics. Another important finding was that glands of some members of the subgenus also contain flavanone O-glucosides and flavanone-β-triketone conjugates. In addition, glands contain free β-triketones, β-triketone heterodimers and chromone C-glucosides. Therefore, the foliar glands

Growth and nutrition of eucalyptus clones seedlings inoculated with mycorrhizal fungi

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Francisco de Sousa Lima

2014-06-01

Full Text Available Eucalyptus is one of the most planted forest species, in Brazil, due to its rapid growth and high economic yield. Arbuscular mycorrhizal fungi improve the seedlings nutritional and phytosanitary status, besides increasing their resistance to biotic and abiotic stress. This study aimed to evaluate the effect of inoculation with arbuscular mycorrhizal fungi species on the growth and nutrition of different eucalyptus clones seedlings. The experiment was conducted under greenhouse conditions, in a randomized blocks design and a 5x5 factorial scheme (five fungal species and five eucalyptus clones, with five replications. In general, the mycorrhizal symbiosis significantly increased the growth and nutrition of eucalyptus seedlings, when compared to the non-inoculated seedlings. The most efficient interaction occured between the 2361 clone and the Entrophospora infrequens fungus, with increases of 107.3% and 120.6%, for the shoot and root dry biomass yield, and 107.7%, 94.1% and 103.3%, respectively for the accumulation of N, P and K in the seedlings shoots. All the fungal species studied showed a high absolute compatibility index with eucalyptus clones. The Glomus manihots and E. infrequens fungi presented a higher functional compatibility index with the clones tested. The 5204 clone showed 75% of compatibility with the fungi evaluated.

Phytoremediation efficiency OF CD by Eucalyptus globulus transplanted from polluted and unpolluted sites.

Science.gov (United States)

Luo, Jie; Qi, Shihua; Peng, Li; Wang, Jinji

2016-01-01

The capacity of plants to uptake heavy metals from contaminated soils has shown great phytoremediation potential. The development, resistibility and Cd extraction of Eucalyptus globulus individuals from metalliferous and clean sites in different years were analyzed under a specific environment. Eucalyptus globulus planted in Guiyu for phytoremediation or cultivated in an uncontaminated, natural environment for economic purposes were transplanted to Yuecheng town, which, in recent years, has been involved in the e-waste dismantling and recycling business, to compare the phytoremediation efficiency of Eucalyptus globulus trees grown in different environments. Trees cultivated in polluted areas can remove far more Cd and Hg from the contaminated soil than the individuals from clean soils because metalliferous Eucalyptus globulus can produce more biomass and uptake more heavy metals than nonmetalliferous plants per year. As polluted environments negatively affect the growth of plants, we speculated that the phytoremediation efficiency of metalliferous Eucalyptus globulus should decrease over time and that nonmetalliferous trees should adapt to the local environment.

Pretreatment of Eucalyptus in biphasic system for furfural production and accelerated enzymatic hydrolysis.

Science.gov (United States)

Zhang, Xiudong; Bai, Yuanyuan; Cao, Xuefei; Sun, Runcang

2017-08-01

Herein, an efficient biphasic pretreatment process was developed to improve the production of furfural (FF) and glucose from Eucalyptus. The influence of formic acid and NaCl on FF production from xylose in water and various biphasic systems was investigated. Results showed that the addition of formic acid and NaCl significantly promoted the FF yield, and the biphasic system of MIBK (methyl isobutyl ketone)/water exhibited the best performance for FF production. Then the Eucalyptus was pretreated in the MIBK/water system, and a maximum FF yield of 82.0% was achieved at 180°C for 60min. Surface of the pretreated Eucalyptus became relatively rough and loose, and its crystallinity index increased obviously due to the removal of hemicelluloses and lignin. The pretreated Eucalyptus samples showed much higher enzymatic hydrolysis rates (26.2-70.7%) than the raw Eucalyptus (14.5%). Copyright © 2017 Elsevier Ltd. All rights reserved.

Temporal dynamics of the response to Al stress in Eucalyptus grandis × Eucalyptus camaldulensis

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Berenice K. de Alcântara

2015-06-01

Full Text Available Lipid peroxidation and root elongation of Eucalyptus grandis × Eucalyptus camaldulensis were studied under stress conditions in response to aluminum (Al, a metal known to limit agricultural productivity in acidic soils primarily due to reduced root elongation. In Brazil, the Grancam 1277 hybrid (E. grandis × E. camaldulensis has been planted in the "Cerrado", a region of the country with a wide occurrence of acidic soils. The present study demonstrated that the hybrid exhibited root growth reduction and increased levels of lipid peroxidation after 24h of treatment with 100 µM of Al, which was followed by a reduction in lipid peroxidation levels and the recovery of root elongation after 48h of Al exposure, suggesting a rapid response to the early stressful conditions induced by Al. The understanding of the temporal dynamics of Al tolerance may be useful for selecting more tolerant genotypes and for identifying genes of interest for applications in bioengineering.

Is Eucalyptus Cryptically Self-incompatible?

Science.gov (United States)

Horsley, Tasmien N; Johnson, Steven D

2007-12-01

The probability that seeds will be fertilized from self- versus cross-pollen depends strongly on whether plants have self-incompatibility systems, and how these systems influence the fate of pollen tubes. In this study of breeding systems in Eucalyptus urophylla and Eucalyptus grandis, epifluorescence microscopy was used to study pollen tube growth in styles following self- and cross-pollinations. Pollen tubes from self-pollen took significantly longer than those from cross-pollen to grow to the base of the style in both E. urophylla (120 h vs. 96 h) and E. grandis (96 h vs. 72 h). In addition, both species exhibited reduced seed yields following self-pollination compared with cross-pollination. The present observations suggest that, in addition to a late-acting self-incompatibility barrier, cryptic self-incompatibility could be a mechanism responsible for the preferential out-crossing system in these two eucalypt species.

Energy-Based Evaluations on Eucalyptus Biomass Production

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Thiago L. Romanelli

2012-01-01

Full Text Available Dependence on finite resources brings economic, social, and environmental concerns. Planted forests are a biomass alternative to the exploitation of natural forests. In the exploitation of the planted forests, planning and management are key to achieve success, so in forestry operations, both economic and noneconomic factors must be considered. This study aimed to compare eucalyptus biomass production through energy embodiment of anthropogenic inputs and resource embodiment including environmental contribution (emergy for the commercial forest in the Sao Paulo, Brazil. Energy analyses and emergy synthesis were accomplished for the eucalyptus production cycles. It was determined that emergy synthesis of eucalyptus production and sensibility analysis for three scenarios to adjust soil acidity (lime, ash, and sludge. For both, energy analysis and emergy synthesis, harvesting presented the highest input demand. Results show the differences between energy analysis and emergy synthesis are in the conceptual underpinnings and accounting procedures. Both evaluations present similar trends and differ in the magnitude of the participation of an input due to its origin. For instance, inputs extracted from ores, which represent environmental contribution, are more relevant for emergy synthesis. On the other hand, inputs from industrial processes are more important for energy analysis.

PASSIOMA: Exploring Expressed Sequence Tags during Flower Development in Passiflora spp.

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Lucas Cutri

2012-01-01

Full Text Available The genus Passiflora provides a remarkable example of floral complexity and diversity. The extreme variation of Passiflora flower morphologies allowed a wide range of interactions with pollinators to evolve. We used the analysis of expressed sequence tags (ESTs as an approach for the characterization of genes expressed during Passiflora reproductive development. Analyzing the Passiflora floral EST database (named PASSIOMA, we found sequences showing significant sequence similarity to genes known to be involved in reproductive development such as MADS-box genes. Some of these sequences were studied using RT-PCR and in situ hybridization confirming their expression during Passiflora flower development. The detection of these novel sequences can contribute to the development of EST-based markers for important agronomic traits as well as to the establishment of genomic tools to study the naturally occurring floral diversity among Passiflora species.

Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing

DEFF Research Database (Denmark)

Willenbrock, Hanni; Salomon, Jesper; Søkilde, Rolf

2009-01-01

Recently, next-generation sequencing has been introduced as a promising, new platform for assessing the copy number of transcripts, while the existing microarray technology is considered less reliable for absolute, quantitative expression measurements. Nonetheless, so far, results from the two...... technologies have only been compared based on biological data, leading to the conclusion that, although they are somewhat correlated, expression values differ significantly. Here, we use synthetic RNA samples, resembling human microRNA samples, to find that microarray expression measures actually correlate...... better with sample RNA content than expression measures obtained from sequencing data. In addition, microarrays appear highly sensitive and perform equivalently to next-generation sequencing in terms of reproducibility and relative ratio quantification....

Identification of a STOP1-like protein in Eucalyptus that regulates transcription of Al tolerance genes.

Science.gov (United States)

Sawaki, Yoshiharu; Kobayashi, Yuriko; Kihara-Doi, Tomonori; Nishikubo, Nobuyuki; Kawazu, Tetsu; Kobayashi, Masatomo; Kobayashi, Yasufumi; Iuchi, Satoshi; Koyama, Hiroyuki; Sato, Shigeru

2014-06-01

Tolerance to soil acidity is an important trait for eucalyptus clones that are introduced to commercial forestry plantations in pacific Asian countries, where acidic soil is dominant in many locations. A conserved transcription factor regulating aluminum (Al) and proton (H⁺) tolerance in land-plant species, STOP1 (SENSITIVE TOPROTON RHIZOTOXICITY 1)-like protein, was isolated by polymerase chain reaction-based cloning, and then suppressed by RNA interference in hairy roots produced by Agrobacterium rhizogenes-mediated transformation. Eucalyptus STOP1-like protein complemented proton tolerance in an Arabidopsis thaliana stop1-mutant, and localized to the nucleus in a transient assay of a green fluorescent protein fusion protein expressed in tobacco leaves by Agrobacterium tumefaciens-mediated transformation. Genes encoding a citrate transporting MULTIDRUGS AND TOXIC COMPOUND EXTRUSION protein and an orthologue of ALUMINUM SENSITIVE 3 were suppressed in transgenic hairy roots in which the STOP1 orthologue was knocked down. In summary, we identified a series of genes for Al-tolerance in eucalyptus, including a gene for STOP1-like protein and the Al-tolerance genes it regulates. These genes may be useful for molecular breeding and genomic selection of elite clones to introduce into acid soil regions. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Eucalyptus beyond its native range: Environmental issues in exotic bioenergy plantations

Science.gov (United States)

John A. Stanturf; Eric D. Vance; Thomas R. Fox; Matias Kirst

2013-01-01

The genus Eucalyptus is native to Australia and Indonesia but has been widely planted in many countries. Eucalyptus has proven to be particularly successful in tropical and subtropical regions. Several species are also successful in some temperate regions, but problems with sudden and severe frosts pose limitations. Current...

Nanofibrillated cellulose (CNF) from eucalyptus sawdust as a dry strength agent of unrefined eucalyptus handsheets.

Science.gov (United States)

Vallejos, María Evangelina; Felissia, Fernando Esteban; Area, María Cristina; Ehman, Nanci Vanesa; Tarrés, Quim; Mutjé, Pere

2016-03-30

Nanofibrillated cellulose has been obtained from the cellulosic fraction of eucalyptus sawdust. The fractionation process involved the partial removal of hemicelluloses and lignin. CNF was obtained using TEMPO oxidation with NaOCl in basic medium followed by mechanical homogenization. The obtained CNF was subsequently used as a dry strength agent on unbleached unrefined eucalyptus pulp. The addition of 3, 6 and 9 wt.% of CNF increased lineally the tensile index of handsheets to about 55 N mg(-1) at 35°SR, compatible with papermachine runnability. The other mechanical properties also increased substantially, and porosity decreased moderately. The estimated specific surface and average diameter of these CNF were 60 m(2)g(-1), and of 41.0 nm, respectively. The addition of 9 wt.% of CNF produced an increase in mechanical strength, equivalent to that produced by PFI refining at 1600 revolutions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Consortium of eucalyptus with forage sorghum in semiarid of Minas Gerais State

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Carlos Juliano Brant Albuquerque

2017-11-01

Full Text Available ABSTRACT: The objective was to estimate the wood yield and essential oil content in three clones of eucalyptus that were planted in four contrasting arrangements and intercropped with sorghum. Eucalyptus clones MA2001 (Eucalyptus camaldulensis x E. tereticornis, A144 (Eucalyptus urophylla x E. grandis, and GG100 (Eucalyptus urophylla x E. grandis, were planted in single rows (10x2m, double rows (2x3+15m and 2x3+20m; and, triple rows (2x3x2+10m in a randomized, complete block design experiment with four replicates. Our results demonstrated that planting spacing did not influence the essential oil yield or diameter at breast height in the clones. However, higher density plantings were shown to result in higher fresh weight of branches and leaves per plant. MA2001 grew taller, produced higher quantity of fresh biomass of branches and leaves per plant and volume of wood per hectare, and yielded more essential oil yield than the other clones. We concluded that MA2001 is the most suitable of the clones tested here for cultivation in water deficit conditions.

Did Eucalyptus contribute to environment degradation? Implications from a dispute on causes of severe drought in Yunnan and Guizhou, China

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WenJun Zhang

2012-06-01

Full Text Available Various viewpoints were proposed to explain the causes of recent years' severe drought occurred in Yunnan and Guizhou, China. In general there are two parties of viewpoints, the Eucalyptus cause and climate change cause. I think Yunnan-Guizhou drought has been mainly caused by abnormal climate change. Eucalyptus was not significant in the formation of Yunnan-Guizhou drought. However, the forestation effect of Eucalyptus in China was not good. Environment quality and biodiversity in Eucalyptus plantation forests has been degrading in last decades. Enhancement of alleopathy of Eucalyptus trees under drought conditions would partly contribute to biodiversity reduction and environment degradation in Eucalyptus plantation forests. For existing Eucalyptus plantation forests of Yunnan, I suggest that some improvement measures should be adopted. Artificial weeding and cleaning in Eucalyptus plantation forests should be banned. Density of Eucalyptus trees needs to be reduced. Biodiversity should be artificially improved in Eucalyptus plantation forests. In the future, the mountains and lands with better vegetation cover must not be reclaimed for Eucalyptus planting. Eucalyptus plantation forests should be made in barren mountains and lands with poor biodiversity.

QUALIDADE DA SECAGEM CONVENCIONAL CONJUNTA DA MADEIRA DE CLONES DE TRÊS ESPÉCIES DE Eucalyptus sp.

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Djeison Cesar Batista

2015-01-01

Full Text Available ABSTRACT The Brazilian industry commonly dries different species of eucalypt in a same load because of the difficulty of identifying the species, hybrids and clones, and also by optimizing the use of the kiln. However, this practice is not recommended in the literature. The aim of this work was to verify the quality of grouped conventional drying of Eucalyptus saligna , Eucalyptus grandis and Eucalyptus dunnii from clonal plantations. To this end, three loads were dried with the three species together in a pilot conventional dry kiln. The criteria used to analyze the quality of dried wood were final moisture content, end checks, cupping, collapse, moisture gradient and drying stresses. Eucalyptus grandis showed the best quality of drying, followed by Eucalyptus saligna , and both species have potential to be kiln dried together. Eucalyptus dunnii had the worst quality of drying, and should not be kiln dried together with Eucalyptus grandis and Eucalyptus saligna. The basic density and shrinkage were good parameters for the expected quality of the drying of eucalyptus species, in which less dense and more dimensionally stable species had better quality of drying. The drying schedule used must be modified to further drying of these species, especially regarding to uniformity and conditioning periods, which were considered insufficient.

In vitro anticancer properties of selected Eucalyptus species.

Science.gov (United States)

Bhuyan, Deep Jyoti; Sakoff, Jennette; Bond, Danielle R; Predebon, Melanie; Vuong, Quan V; Chalmers, Anita C; van Altena, Ian A; Bowyer, Michael C; Scarlett, Christopher J

2017-08-01

In spite of the recent advancements in oncology, the overall survival rate for pancreatic cancer has not improved over the last five decades. Eucalypts have been linked with cytotoxic and anticancer properties in various studies; however, there is very little scientific evidence that supports the direct role of eucalypts in the treatment of pancreatic cancer. This study assessed the anticancer properties of aqueous and ethanolic extracts of four Eucalyptus species using an MTT assay. The most promising extracts were further evaluated using a CCK-8 assay. Apoptotic studies were performed using a caspase 3/7 assay in MIA PaCa-2 cells. The aqueous extract of Eucalyptus microcorys leaf and the ethanolic extract of Eucalyptus microcorys fruit inhibited the growth of glioblastoma, neuroblastoma, lung and pancreatic cancer cells by more than 80% at 100 μg/mL. The E. microcorys and Eucalyptus saligna extracts showed lower GI 50 values than the ethanolic Eucalyptus robusta extract in MIA PaCa-2 cells. Aqueous E. microcorys leaf and fruit extracts at 100 μg/mL exerted significantly higher cell growth inhibition in MIA PaCa-2 cells than other extracts (p  0.05) were observed in aqueous E. microcorys leaf (86.05 ± 4.75 μg/mL) and fruit (64.66 ± 15.97 μg/mL) and ethanolic E. microcorys leaf (79.30 ± 29.45 μg/mL) extracts in MIA PaCa-2 cells using the CCK-8 assay. Caspase 3/7-mediated apoptosis and morphological changes of cells were also witnessed in MIA PaCa-2 cells after 24 h of treatment with the extracts. This study highlighted the significance of E. microcorys as an important source of phytochemicals with efficacy against pancreatic cancer cells. Further studies are warranted to purify and structurally identify individual compounds and elucidate their mechanisms of action for the development of more potent and specific chemotherapeutic agents for pancreatic cancer.

Variation in natural durability of seven Eucalyptus grandis x Eucalyptus urophylla hybrid clones

Science.gov (United States)

F.J.N. Franca; T.S.F.A. Franca; R.A Arango; B.M. Woodward; G.B. Vidaurre

2017-01-01

Programs aimed at developing clones of hybrid trees are commonly established in Brazil to meet the demands of various forest-based industries. These programs have continually improved the quality of eucalyptus wood, which has the potential to reduce deforestation by lowering demand for other high-value species. This is particularly true in the lumber market, but little...

Effet de l'hybridation interspecifique sur la teneur et la composition chimique des huiles essentielles d'eucalyptus cultivés au Maroc

OpenAIRE

Farah A.; Fechtal M.; Chaouch A.

2002-01-01

Interspecific hybridization effect on the content and the chemical composition of essential oils of eucalyptus grown in Morocco. In this work, the quality and quantity of the leave essential oils of five Eucalyptus hybrids were determined. The crosses of Eucalyptus globulus ssp. maideni, Eucalyptus globulus ssp. globulus, Eucalyptus grandis, Eucalyptus cladocalyx and Eucalyptus diversicolor with Eucalyptus camaldulensis have been studied. The average yield of parental species samples varies a...

AN INVESTIGATION OF THE VARIATION OF PORE STRUCTURE IN EUCALYPTUS FIBRE DURING RECYCLING

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Wen Jie Guo

2011-04-01

Full Text Available Variation in the pore structure of eucalyptus fibre during recycling was investigated using low-temperature nitrogen adsorption, atomic force microscopy (AFM, and fractal geometry. The Brunauer- Emmett-Teller (BET surface area of the fibre fell to 55.1% of the original value after the first cycle, and to 49.0% after the second cycle, ultimately declining to 35.0% after the fourth. The Barret-Joyner- Halenda (BJH adsorption cumulative pore volume fell to 38.4% of the original by the fourth. After four cycles, the average pore diameter fell to 82% of the original. AFM tests showed that the pore structure in fibre expressed high self-similarity in statistics, and the pore structure in the fibre could be regarded as a fractal. Fractal geometry analysis of the results showed that the fractal dimension of eucalyptus virgin fibre is 2.954. With the number of process cycles increasing, the fractal dimension fell to a minimum of 2.886 after four cycles. The water retention value (WRV of the fibre was proportional to the fractal dimension and the crystallinity of fibre.

Gene mining a marama bean expressed sequence tags (ESTs ...

African Journals Online (AJOL)

The authors reported the identification of genes associated with embryonic development and microsatellite sequences. The future direction will entail characterization of these genes using gene over-expression and mutant assays. Key words: Namibia, simple sequence repeats (SSR), data mining, homology searches, ...

Evaluation of the use potential of nine species of genus Eucalyptus for production of veneers and plywood panels

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Setsuo Iwakiri

2013-06-01

Full Text Available The objective of thisstudywas to evaluate the use potential of nine species of Eucalyptus for production of veneer sheets and multilaminated plywood panels. Veneers were cut using a pilot laminating lathe to a nominal thickness of 2.0 mm. Analysis included finding values of overall yield and yield according to three quality classes for the nine relevant species. Plywood panels were manufactured in a laboratory, consisting of five 2.0 mm veneer sheets which were bonded together with phenol-formaldehyde resin at a weight of 360 g/m2 (double line. The panels were compressed using a specific pressure of 10 kgf/cm2, a temperature of 140ºC and a pressing time of 10 minutes. Results indicated that, with the exception of E. phaeotricha and E. pellita, all other Eucalyptus species had above 50% average veneer yield after lamination. Results of glue line shear testing and static bending parallel and perpendicular demonstrated that species Eucalyptus grandis, Eucalyptus saligna, Eucalyptus dunnii, Eucalyptus globulus, Eucalyptus viminalis, Eucalyptus robusta and Eucalyptus pellita have great potential within the parameters of this study for use in the production of veneer sheets and plywood panels intended for outdoor use.

Effect of age on calorific value and some mechanical properties of three Eucalyptus species grown in Ethiopia

Energy Technology Data Exchange (ETDEWEB)

Mulugeta Lemenih; Tsegaye Bekele [Wondo Genet College of Forestry, Shashemene (Ethiopia)

2004-09-01

The effect of age on calorific value, specific gravity, modulus of rupture (MOR) and modulus of elasticity (MOE) of three plantation grown Eucalyptus species in the south-central highlands of Ethiopia was investigated. The species investigated were Eucalyptus globulus Labill., E. saligna Sm. and E grandis W. Hill ex Maid. The investigation was made on sample trees taken from age sequences of stands of the three species. Calorific values were determined on sample discs taken at 4, 8, 12 and 16 m up the stems of the sample trees. Calorific values were also determined for heartwood and sapwood of each disc separately. Specific gravity, MOR and MOE were investigated on a 1 -m long sample log taken from the butt end of each sample tree. The results showed that there was no significant difference in calorific values between the three species when considering a similar age category. Similarly, there was no significant difference in calorific values between disc positions and wood types (heartwood versus sapwood) within species. However, calorific values tend to increase along the tree stem towards the treetop for each of the three species. Correlation between calorific values of each disc position and tree age was generally weak and dominantly negative for E. saligna and E. globulus, but positive for E. grandis. On the other hand, there was a weak but positive correlation between tree age and specific gravity and MOR for the three species. MOE was almost non-correlated with age. Generally, the results showed that waiting for older ages for the three Eucalyptus species may not further increase their calorific values. Hence, stands of the three Eucalyptus species can be harvested and used for fuelwood at an early age as traditionally managed on short-rotation basis. (author)

Management of Eucalyptus plantations influence small mammals’ density: evidences from Southern Europe

NARCIS (Netherlands)

Teixeira, D; Carrilho, M; Mexia, T; Kobel, M; Ferreira Dos Santos, M.J.; Santos-Reis, Margarida; Rosalino, Luis Miguel

2017-01-01

Forestry plantations, and particularly those of exotic Eucalyptus, are important man-made systems in Europe, and especially in Portugal, where these represent now the largest fraction of forested areas. Eucalyptus plantations may have impacts on vertebrate communities in Europe; however, these have

Asociacion de leveduras del genero Cryptococcus con especies de Eucalyptus en Santafe de Bogota Isolation of Cryptococcus sp. associated with Eucalyptus trees in Santafé de Bogota

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A. Duarte

1994-04-01

Full Text Available El aislamiento de Cryptococcus neoformans var. gattii, serotipo B, a partir del medio ambiente se estableció inicialmente en Australia en 1989, en asocio con el Eucalyptus camaldulensis y posteriormente con E. tereticornis. Con estos hallazgos se postuló que desde allí, el hongo se ha podido exportar, por medio de las semillas contaminadas, a otras regiones geográficas, incluyendo Colombia. El objetivo de éste estudio fue identificar las levaduras del género Cryptococcus asociadas con especies de Eucalyptus sp., como primera evaluación en la ecología de C. neoformans var. gattii en nuestro país. Se realizó en Santafé de Bogotá, con una población de 100 árboles ubicados al centro, nororiente, oriente y occidente de la ciudad, recolectando de cada uno de ellos flores, frutos, hojas, cortezas y detritos; el procesamiento de las muestras incluyó extracción del material con una solución salina con antibióticos, siembra en medios selectivos e identificación de las especies con base en las características morfológicas, macro y microscópicas y bioquímicas. Se aislaron 27 cepas de Cryptococcus pertenecientes a 9 especies de Cryptococcus, a partir de 21 árboles ubicados en 5 zonas diferentes de la ciudad. Se aisló C. neoformans y se identificó como C. neoformans var. neoformans serotipo A. Estos datos iniciales son importantes como primera evaluación de la asociación de Cryptococcus sp. con los Eucalyptus en nuestro país.Environmental isolation of Cryptococcus neoformans var. gattii was first made in Australia in 1989 by ELLIS. He established a specific association with the tree species Eucalyptus camaldulensis and E. tereticornis. Based on his findings, ELLIS proposed that the fungus could be exported from Australia to others regions, including Colombia, by means of infected seeds. The purpose of this study was to isolate and identify Cryptococcus sp., associated with Eucalyptus trees; this is the first ecological evaluation

Antimicrobial, Physicochemical, Mechanical, and Barrier Properties of Tapioca Starch Films Incorporated with Eucalyptus Extract

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M. Rojhan

2013-11-01

Full Text Available Starch is found in abundance in nature and it is one of the raw materials used for food packagingbecause of the low price, biodegradability, good mechanical and barrier properties. The recycling ability ofcoating materials was significantly increased by using edible films and coating in comparison to traditionalpackaging and it could be an alternative for synthetic films. In this research, the effect of eucalyptus extract(Aqueous Extract was investigated on tapioca starch films. Tapioca starch films were prepared by castingmethod with addition of eucalyptus extract and a mixture of sorbitol/glycerol (weight ratio of 3 to 1 asplasticizers. Eucalyptus extract incorporated to the tapioca starch films were dried at different concentrations(0, 15, 25, and 35 of total solid under controlled conditions. Physicochemical properties such as waterabsorption capacity (WAC, water vapor permeability (WVP and mechanical properties of the films wereevaluated. Results showed that by increasing the concentration of eucalyptus extract, tensile strength wasincreased from 20.60 to 15.68 (MPa, also elongation was increased from 19.31 to 23.57 (% at break andYoung’s modulus was decreased from 800.31 to 500.32 (MPa. Also incorporation of eucalyptus extract in thestructure of biopolymer increased permeability of water vapor of starch films. Tapioca starch filmsincorporated with eucalyptus extract exhibited excellent antimicrobial activity against E. Coli. In summary,eucalyptus extract improves functional properties of tapioca starch films and this types of films can be used infood packaging.

Dynamics of adventitious rooting in mini-cuttings of Eucalyptus benthamii x Eucalyptus dunnii=Dinamica de enraizamento adventício em miniestacas de Eucalyptus benthamii x Eucalyptus dunnii

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Antônio Natal Gonçalves

2012-04-01

Full Text Available It is possible to determine the optimum time for permanence of vegetative propagules (mini-cuttings inside a greenhouse for rooting, and this value can be used to optimize the structure of the nursery. The aim of this study was to determine the dynamics of adventitious rooting in mini-cuttings of three clones of Eucalyptus benthamii x Eucalyptus dunnii. Sprouts of H12, H19 and H20 clones were collected from mini-stumps that were planted in gutters containing sand and grown in a semi-hydroponic system. The basal region of the mini-cuttings was immersed in 2,000 mg L-1 indole-3-butyric acid (IBA solution for 10 seconds. The rooting percentage of the mini-cuttings, the total length of the root system and the rooting rate per mini-cutting were also evaluated at 0 (time of planting, 7, 14, 21, 28, 35, 42, 49 and 56 days. We used logistic and exponential regression to mathematically model the speed of rhizogenesis. The rooting percentage was best represented as a logistic model, and the total length of the root system was best represented as an exponential model. The clones had different speeds of adventitious rooting. The optimum time for permanence of the mini-cuttings inside the greenhouse for rooting was between 35 and 42 days, and varied depending on the genetic material.O tempo ideal de permanência de propágulos vegetativos (miniestacas no interior da casa de vegetação para a rizogênese é possível de ser determinado matematicamente, o que pode otimizar as instalações do viveiro. O objetivo deste estudo foi determinar a dinâmica de enraizamento de miniestacas de três clones de Eucalyptus benthamii x Eucalyptus dunnii. Brotações dos clones H19, H12 e H20 foram coletadas de minicepas plantadas em canaletão com areia e cultivadas sob sistema semi-hidropônico. A região basal da miniestaca foi imersa em solução de 2.000 mg L-1 de ácido indolbutírico (AIB por 10 segundos. A porcentagem de enraizamento de miniestacas, o comprimento

Pretreatment of eucalyptus with recycled ionic liquids for low-cost biorefinery.

Science.gov (United States)

Xu, Jikun; Liu, Bingchuan; Hou, Huijie; Hu, Jingping

2017-06-01

It is urgent to develop recycled ionic liquids (ILs) as green solvents for sustainable biomass pretreatment. The goal of this study is to explore the availability and performance of reusing 1-allyl-3-methylimidazolium chloride ([amim]Cl) and 1-butyl-3-methylimidazolium acetate ([bmim]OAc) for pretreatment, structural evolution, and enzymatic hydrolysis of eucalyptus. Cellulose enzymatic digestibility slightly decreased with the increased number of pretreatment recycles. The hydrolysis efficiencies of eucalyptus pretreated via 4th recycled ILs were 54.3% for [amim]Cl and 72.8% for [bmim]OAc, which were 5.0 and 6.7-folds higher than that of untreated eucalyptus. Deteriorations of ILs were observed by the relatively lower sugar conversion and lignin removal from eucalyptus after 4th reuse. No appreciable changes in fundamental framework and thermal stability of [amim]Cl were observed even after successive pretreatments, whereas the anionic structure of [bmim]OAc was destroyed or replaced. This study suggested that the biomass pretreatment with recycled ILs was a potential alternative for low-cost biorefinery. Copyright © 2017 Elsevier Ltd. All rights reserved.

Cloning, sequencing, and expression of cDNA for human β-glucuronidase

International Nuclear Information System (INIS)

Oshima, A.; Kyle, J.W.; Miller, R.D.

1987-01-01

The authors report here the cDNA sequence for human placental β-glucuronidase (β-D-glucuronoside glucuronosohydrolase, EC 3.2.1.31) and demonstrate expression of the human enzyme in transfected COS cells. They also sequenced a partial cDNA clone from human fibroblasts that contained a 153-base-pair deletion within the coding sequence and found a second type of cDNA clone from placenta that contained the same deletion. Nuclease S1 mapping studies demonstrated two types of mRNAs in human placenta that corresponded to the two types of cDNA clones isolated. The NH 2 -terminal amino acid sequence determined for human spleen β-glucuronidase agreed with that inferred from the DNA sequence of the two placental clones, beginning at amino acid 23, suggesting a cleaved signal sequence of 22 amino acids. When transfected into COS cells, plasmids containing either placental clone expressed an immunoprecipitable protein that contained N-linked oligosaccharides as evidenced by sensitivity to endoglycosidase F. However, only transfection with the clone containing the 153-base-pair segment led to expression of human β-glucuronidase activity. These studies provide the sequence for the full-length cDNA for human β-glucuronidase, demonstrate the existence of two populations of mRNA for β-glucuronidase in human placenta, only one of which specifies a catalytically active enzyme, and illustrate the importance of expression studies in verifying that a cDNA is functionally full-length

Expression of Kirsten murine sarcoma virus sequences in Beagle dog tissues

International Nuclear Information System (INIS)

Kerkof, P.R.; Kelly, G.

1988-01-01

Labeled cDNA synthesized from RNA extracted from 238 PuO 2 -, 239 PuO 2 -, and 90 Sr-induced lung tumors in Beagle dogs, from nontumor tissue from 239 PuO 2 -exposed dogs, and from unexposed dog lung and liver tissue produces strong hybridization signals with a plasmid (pKSma) that contains Kirsten murine sarcoma virus (KMSV) sequences. At least 90 percent of the KMSV sequences are expressed in these dog tissues, including sequences corresponding to p21 K-ras, qp70 envelope glycoprotein, and at least one other proviral sequence. The expression of Kirsten ras and other sarcoma virus sequences may have important implications for the interpretation of carcinogenesis studies in these dogs. (author)

MINERAL ELEMENTS IN WOODS OF EUCALYPTUS AND BLACK WATTLE AND ITS INFLUENCE IN A BLEACHED KRAFT PULP MILL

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André Fredo

2009-09-01

Full Text Available Effluents are one of the most important problems in a pulp mill regarding to environmental subjects. With the purpose to reduce them, the mills are closing the internal cycles and reducing the water consumption. The wood, as the most significant source of non-process elements to the system, is responsible for some troubles to the industrial process. With the aim of evaluating their intake and to offer some informations for closing the loop, the contents of Al, Ca, Cu, Fe, K, Mg, Mn, Na, Ni, and Si were analysed in Acacia mearnsii, Eucalyptus dunnii, Eucalyptus globulus globulus, Eucalyptus grandis and Eucalyptus saligna woods. Wood samples were prepared by oven burning and acidic digestion methods, following analysis by ICP (inductively coupled plasm. Using also the results from silvicultural evaluation of trees and stands, they were calculated which elements were carried out from the site in larger amounts (K, Ca, Na, Al, Mn and Si and the species which exported largest amount of these elements (Eucalyptus dunnii and Eucalyptus globulus. The species with lower growth were Eucalyptus globulus and Eucalyptus dunnii, that leads to a bigger elements input and more potential industrial troubles. It was observed a range of 3.8 (Eucalyptus grandis up to 6 (Eucalyptus dunnii kg of analised mineral elements introduced to the process per ton of umbleached pulp produced. The Acacia mearnsii showed the lower level for Fe, Mn and Ni, being useful for oxygen, ozone and peroxide bleaching. The silicon observed in woods was in low concentration although the high values of this element in industrial liquor cycle. This leads to state that there is some contamination with soil when harvesting and handling the wood. Special care must be taken with both high ash and high mineral elements species, such as Eucalyptus dunnii and Eucalyptus globulus.

The influence of Eucalyptus plantations on the macrofauna associated with Salvinia auriculata in Southeast Brazil

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M. CALLISTO

Full Text Available The influence of Eucalyptus plantations on the structure and composition of macroinvertebrate communities associated with the aquatic fern Salvinia auriculata Aublet were investigated in a high altitude lake bordered by either secondary Atlantic forest or Eucalyptus plantations. Comparisons of the diversity of Chironomidae (Diptera, Insecta larvae in the littoral zone between these two vegetation types showed higher diversity of larvae in waters bordered by Eucalyptus. The results demonstrated that the predominance of carnivorous taxa among the macroinvertebrate fauna appears to be the major controlling factor for limiting diversity in lake areas bordered by Eucalyptus.

The influence of Eucalyptus plantations on the macrofauna associated with Salvinia auriculata in Southeast Brazil

Directory of Open Access Journals (Sweden)

CALLISTO M.

2002-01-01

Full Text Available The influence of Eucalyptus plantations on the structure and composition of macroinvertebrate communities associated with the aquatic fern Salvinia auriculata Aublet were investigated in a high altitude lake bordered by either secondary Atlantic forest or Eucalyptus plantations. Comparisons of the diversity of Chironomidae (Diptera, Insecta larvae in the littoral zone between these two vegetation types showed higher diversity of larvae in waters bordered by Eucalyptus. The results demonstrated that the predominance of carnivorous taxa among the macroinvertebrate fauna appears to be the major controlling factor for limiting diversity in lake areas bordered by Eucalyptus.

Expression profiling and comparative sequence derived insights into lipid metabolism

Energy Technology Data Exchange (ETDEWEB)

Callow, Matthew J.; Rubin, Edward M.

2001-12-19

Expression profiling and genomic DNA sequence comparisons are increasingly being applied to the identification and analysis of the genes involved in lipid metabolism. Not only has genome-wide expression profiling aided in the identification of novel genes involved in important processes in lipid metabolism such as sterol efflux, but the utilization of information from these studies has added to our understanding of the regulation of pathways participating in the process. Coupled with these gene expression studies, cross species comparison, searching for sequences conserved through evolution, has proven to be a powerful tool to identify important non-coding regulatory sequences as well as the discovery of novel genes relevant to lipid biology. An example of the value of this approach was the recent chance discovery of a new apolipoprotein gene (apo AV) that has dramatic effects upon triglyceride metabolism in mice and humans.

Path analysis of the energy density of wood in eucalyptus clones.

Science.gov (United States)

Couto, A M; Teodoro, P E; Trugilho, P F

2017-03-16

Path analysis has been used for establishing selection criteria in genetic breeding programs for several crops. However, it has not been used in eucalyptus breeding programs yet. In the present study, we aimed to identify the wood technology traits that could be used as the criteria for direct and indirect selection of eucalyptus genotypes with high energy density of wood. Twenty-four eucalyptus clones were evaluated in a completely randomized design with five replications. The following traits were assessed: basic wood density, total extractives, lignin content, ash content, nitrogen content, carbon content, hydrogen content, sulfur content, oxygen content, higher calorific power, holocellulose, and energy density. After verifying the variability of all evaluated traits among the clones, a two-dimensional correlation network was used to determine the phenotypic patterns among them. The obtained coefficient of determination (0.94) presented a higher magnitude in relation to the effect of the residual variable, and it served as an excellent model for explaining the genetic effects related to the variations observed in the energy density of wood in all eucalyptus clones. However, for future studies, we recommend evaluating other traits, especially the morphological traits, because of the greater ease in their measurement. Selecting clones with high basic density is the most promising strategy for eucalyptus breeding programs that aim to increase the energy density of wood because of its high heritability and magnitude of the cause-and-effect relationship with this trait.

Transference of microsatellite markers from Eucalyptus spp to Acca sellowiana and the successful use of this technique in genetic characterization

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Karine Louise dos Santos

2007-01-01

Full Text Available The pineapple guava (Acca sellowiana, known in portuguese as the goiabeira-serrana or "Feijoa", is a native fruit tree from southern Brazil and northern Uruguay that has commercial potential due to the quality and unique flavor of its fruits. Knowledge of genetic variability is an important tool in various steps of a breeding program, which can be facilitated by the use of molecular markers. The conservation of repeated sequences among related species permits the transferability of microsatellite markers from Eucalyptus spp. to A. sellowiana for testing. We used primers developed for Eucalyptus to characterize A. sellowiana accessions. Out of 404 primers tested, 180 amplified visible products and 38 were polymorphic. A total of 48 alleles were detected with ten Eucalyptus primer pairs against DNA from 119 A. sellowiana accessions. The mean expected heterozygosity among accessions was 0.64 and the mean observed heterozygosity 0.55. A high level of genetic diversity was also observed in the dendrogram, where the degree of genetic dissimilarity ranged from 0 to 65% among the 119 genotypes tested. This study demonstrates the possibility of transferring microsatellite markers between species of different genera in addition to evaluating the extent of genetic variability among plant accessions.

Thermal characterization of oil palm fiber and eucalyptus in torrefaction

International Nuclear Information System (INIS)

Chen, Wei-Hsin; Kuo, Po-Chih; Liu, Shih-Hsien; Wu, Wei

2014-01-01

Thermal behavior of biomass in torrefaction plays an important role in the operation of pretreatment. To understand the endothermic and/or exothermic characteristics of biomass in the course of torrefaction, an experimental system is conducted and two kinds of biomass (oil palm fiber and eucalyptus) are investigated. The results indicate that the thermal behavior is significantly influenced by the lignocellulosic composition in biomass and the torrefaction temperature. The thermal decomposition of hemicellulose is the dominant mechanism for oil palm fiber torrefied at 200 and 250 °C, whereas the thermal degradation of cellulose is crucial when the biomass is torrefied at 300 °C. Therefore, the heat of reaction of oil palm fiber increases with increasing torrefaction temperature. The torrefaction of eucalyptus is always endothermic, as a consequence of high cellulose contained in the biomass. It is less endothermic when the torrefaction temperature increases, presumably due to the char formation from cellulose thermal degradation and the exothermic lignin decomposition. As a whole, the values of the heat of reaction of the two samples are between −3.50 and 2.23 MJ/kg. The obtained results have provided a useful insight into the control of torrefaction operation and the design of torrefaction reactor. - Highlights: • Thermal behavior of oil palm fiber and eucalyptus in torrefaction is studied. • Thermal characteristic of biomass in torrefaction depends on lignocellulosic composition. • Heat of reaction of oil palm fiber increases with increasing torrefaction temperature. • Eucalyptus torrefaction is always endothermic because of high cellulose contained. • Torrefaction of eucalyptus is less endothermic when the torrefaction temperature increases

Encapsulated eucalyptus oil in ionically cross-linked alginate microcapsules and its controlled release.

Science.gov (United States)

Noppakundilograt, Supaporn; Piboon, Phianghathai; Graisuwan, Wilaiporn; Nuisin, Roongkan; Kiatkamjornwong, Suda

2015-10-20

Sodium alginate microcapsules containing eucalyptus oil were prepared by oil-in-water emulsification via Shirasu porous glass (SPG) membrane and cross-linked by calcium chloride (CaCl2). SPG membrane pore size of 5.2μm was used to control the size of eucalyptus oil microdroplets. Effects of sodium alginate, having a mannuronic acid/guluronic acid (M/G) ratio of 1.13, eucalyptus oil and CaCl2 amounts on microdroplet sizes and size distribution were elucidated. Increasing sodium alginate amounts from 0.1 to 0.5% (wv(-1)) sodium alginate, the average droplets size increased from 42.2±2.0 to 48.5±0.6μm, with CVs of 16.5±2.2 and 30.2±4.5%, respectively. CaCl2 successfully gave narrower size distribution of cross-linked eucalyptus oil microcapsules. The optimum conditions for preparing the microcapsules, oil loading efficiency, and controlled release of the encapsulated eucalyptus oil from the microcapsules as a function of time at 40°C were investigated. Release model for the oil from microcapsules fitted Ritger-Peppas model with non-Fickian transport mechanism. Copyright © 2015 Elsevier Ltd. All rights reserved.

Avaliação da madeira de Eucalyptus camaldulensis Dehnh e Eucalyptus urophylla S.T. Blake em ensaios de usinagem, visando à produção moveleira Evaluation of the woods of Eucalyptus camaldulensis Dehnh and Eucalyptus urophylla S.T. Blake During machining tests for use by the furniture industry

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Maria Odete Alves de Souza

2009-08-01

Full Text Available Este estudo teve como objetivo avaliar a potencialidade de uso da madeira de clones de Eucalyptus urophylla S. T. Blake, de 6 e 8 anos, e Eucalyptus camaldulensis Dehnh, de 10 anos, no que tange aos processos de usinagem, visando ao seu uso na indústria de móveis. A madeira utilizada originou-se de plantios comerciais cultivados em sistema de consórcio agrossilvipastoril, proveniente da Votorantim Metais Zinco S/A, situada no Município de Vazante, no Estado de Minas Gerais. Utilizaram-se seis árvores por clone, totalizando 18 exemplares. Foram realizados os seguintes ensaios de usinagem: corte paralelo às fibras, corte transversal às fibras, fresagem, aplainamento, furação, furação para espiga, furação para cavilha e moldura. Os resultados mostraram-se satisfatórios, com destaque para o clone de Eucalyptus urophylla com 8 anos, principalmente nos ensaios de corte paralelo e furação para espiga, apresentando grande potencial de uso da espécie para produção de móveis. A madeira dos clones testados apresentou bom desempenho na realização dos ensaios de usinagem, no que se refere à trabalhabilidade, não havendo entraves na sua utilização como fonte de matéria-prima na indústria moveleira.The objective of this research was to conduct machining tests in woods of 6 and 8-year-old Eucalyptus urophylla and of a ten-year old Eucalyptus camaldulensis and to evaluate their possible use by the furniture industry. The wood samples were obtained from six trees of each clone, planted in a consortium with cattle and grain, owned by Votorantim Metals and Zinc. The plantation is located in the neighborhood of the city of Vazante, in the State of Minas Gerais. The following essays were conducted: cut by a table saw either parallel or perpendicular to the grain; shaping; planing; drilling; routing; mortising and drilling for dowels. All the samples yielded satisfactory results, mainly the eight year old Eucalyptus urophylla, during

Expression of Kirsten murine sarcoma virus sequences in Beagle dog tissues

Energy Technology Data Exchange (ETDEWEB)

Kerkof, P R; Kelly, G

1988-12-01

Labeled cDNA synthesized from RNA extracted from {sup 238}PuO{sub 2}-, {sup 239}PuO{sub 2}-, and {sup 90}Sr-induced lung tumors in Beagle dogs, from nontumor tissue from {sup 239}PuO{sub 2}-exposed dogs, and from unexposed dog lung and liver tissue produces strong hybridization signals with a plasmid (pKSma) that contains Kirsten murine sarcoma virus (KMSV) sequences. At least 90 percent of the KMSV sequences are expressed in these dog tissues, including sequences corresponding to p21 K-ras, qp70 envelope glycoprotein, and at least one other proviral sequence. The expression of Kirsten ras and other sarcoma virus sequences may have important implications for the interpretation of carcinogenesis studies in these dogs. (author)

DENSIDADE BÁSICA E RETRATIBILIDADE DA MADEIRA DE CLONES DE TRÊS ESPÉCIES DE Eucalyptus

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Djeison Cesar Batista

2010-01-01

Full Text Available Among the planted forests that supply the national wood industry, the genus Eucalyptus has become the most important, due to its fast growth, ease of large scale planting and variability of wood use. The generation of new hybrids and clones is a reality in the national practice of silviculture, and there is great interest currently in finding genetic improvements, mainly for higher volumetric gains and resistance in rough conditions of planting, such as pest attacks, periods of drought, low soil fertility, etc. The basic density is one of the most important physical properties of wood because it relates directly to other properties, including the anisotropic shrinkage. Such properties indicate the rational use of a species in a certain wood product. The aim of this work was to determine the basic density and the anisotropic shrinkage of five wood clones for each one of the following species: Eucalyptus saligna, Eucalyptus grandis and Eucalyptus dunnii. Clone 5 of Eucalyptus saligna presented the highest basic density (0.56 g/cm³ and was the most dimensionally instable. Of all the species, there was only a direct relation among basic density, maximum volumetric shrinkage and maximum volumetric shrinkage coefficient in this clone. Considering maximum volumetric shrinkage as the criterion, clone 3 was the most dimensionally stable. Clones 2 and 3 of Eucalyptus grandis presented the least and the highest basic density, respectively, with 0.40 and 0.49 g/cm³. It was not possible to distinguish among clones 1, 3 and 4 in terms of dimensional stability, and considering maximum volumetric shrinkage coefficient as the criterion, clone 5 was the most dimensionally instable. For Eucalyptus saligna and Eucalyptus dunnii it was not possible to distinguish which clone presented the least basic density. Clone 3 of Eucalyptus dunnii presented the highest basic density (0.65 g/cm³ and considering maximum volumetric shrinkage coefficient as the criterion, it

Eucalyptus biodiesel as an alternative to diesel fuel: preparation and tests on DI diesel engine.

Science.gov (United States)

Tarabet, Lyes; Loubar, Khaled; Lounici, Mohand Said; Hanchi, Samir; Tazerout, Mohand

2012-01-01

Nowadays, the increasing oil consumption throughout the world induces crucial economical, security, and environmental problems. As a result, intensive researches are undertaken to find appropriate substitution to fossil fuels. In view of the large amount of eucalyptus trees present in arid areas, we focus in this study on the investigation of using eucalyptus biodiesel as fuel in diesel engine. Eucalyptus oil is converted by transesterification into biodiesel. Eucalyptus biodiesel characterization shows that the physicochemical properties are comparable to those of diesel fuel. In the second phase, a single cylinder air-cooled, DI diesel engine was used to test neat eucalyptus biodiesel and its blends with diesel fuel in various ratios (75, 50, and 25 by v%) at several engine loads. The engine combustion parameters such as peak pressure, rate of pressure rise, and heat release rate are determined. Performances and exhaust emissions are also evaluated at all operating conditions. Results show that neat eucalyptus biodiesel and its blends present significant improvements of carbon monoxide, unburned hydrocarbon, and particulates emissions especially at high loads with equivalent performances to those of diesel fuel. However, the NOx emissions are slightly increased when the biodiesel content is increased in the blend.

Speciation and distribution of Botryosphaeria spp. on native and introduced Eucalyptus trees in Australia and South Africa

NARCIS (Netherlands)

Slippers, B.; Fourie, G.; Crous, P.W.; Coutinho, T.A.; Wingfield, B.D.; Carnegie, A.J.; Wingfield, M.J.

2004-01-01

Botryosphaeria spp. are important canker and die-back pathogens that affect Eucalyptus spp. They also occur endophytically in Eucalyptus leaves and stems. For the purpose of this study, Botryosphaeria strains were isolated from diseased and symptomless Eucalyptus material from Australia and South

Eucalyptus as a landscape tree

Science.gov (United States)

W. Douglas Hamilton

1983-01-01

Ninety-two species of Eucalyptus were evaluated at the University of California re- search station in San Jose. The purpose: to find acceptable new street and park trees. Growth rates and horticultural characteristics were noted. Forty-three species were studied in locations statewide to evaluate site adaptation and landscape usefulness; flooded, cold, dry, saline....

Biomass in monospecific and mixed stands of eucalyptus and black wattle and corn in an agroforestry system

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Márcio Viera

2011-06-01

Full Text Available This study aimed at quantifying the production and distribution of aboveground biomass from the plants in monospecific and mixed stands of eucalyptus (hybrid E. urophylla x E. grandis and black wattle (Acacia mearnsii and, of corn (Zea mays in agrosilvicultural systems. The biomass evaluation (leaf, branch, bark and wood from the forest species at 6 and 18 months of age were performed at the treatments: 100E (100% of eucalyptus + corn; - 100A (100% of black wattle + corn; - 50E:50A (50% of eucalyptus + 50% of black wattle + corn. The corn biomass evaluation (stem, leaves, straw, cob and grains was performed at treatments 100E; 100A; 50E:50A; 75E:25A (75% of eucalyptus + 25% of black wattle + corn; and - 25E:75A (25% of eucalyptus + 75% of black wattle + corn. The biomass production from eucalyptus and from the black wattle, in both monospecific and mixed planting, did not differ in any of the assessed ages but, when evaluated by plants compartments, it was verified an interspecific competitive interaction from the eucalyptus on the black wattle, reducing the formation of crown biomass. The total production of corn biomass in agrosilvicutural systems with eucalyptus and with black wattle in monospecific or mixed plantings did not differ in the studied treatments.

Water erosion risk prediction in eucalyptus plantations

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Mayesse Aparecida da Silva

2014-04-01

Full Text Available Eucalyptus plantations are normally found in vulnerable ecosystems such as steep slope, soil with low natural fertility and lands that were degraded by agriculture. The objective of this study was to obtain Universal Soil Loss Equation (USLE factors and use them to estimate water erosion risk in regions with eucalyptus planted. The USLE factors were obtained in field plots under natural rainfall in the Rio Doce Basin, MG, Brazil, and the model applied to assess erosion risk using USLE in a Geographic Information System. The study area showed rainfall-runoff erosivity values from 10,721 to 10,642 MJ mm ha-1 h-1 yr-1. Some soils (Latosols had very low erodibility values (2.0 x 10-4 and 1.0 x 10-4t h MJ-1 mm-1, the topographic factor ranged from 0.03 to 10.57 and crop and management factor values obtained for native forest, eucalyptus and planted pasture were 0.09, 0.12 and 0.22, respectively. Water erosion risk estimates for current land use indicated that the areas where should receive more attention were mainly areas with greater topographic factors and those with Cambisols. Planning of forestry activities in this region should consider implementation of other conservation practices beyond those already used, reducing areas with a greater risk of soil erosion and increasing areas with very low risk.

A comparison of the effectiveness of chloroform and eucalyptus oil in dissolving root canal sealers.

Science.gov (United States)

Schäfer, Edgar; Zandbiglari, Tannaz

2002-05-01

The solubility of 8 different root canal sealers in chloroform and in eucalyptus oil was compared. For standardized samples (n=12), ring molds were filled with mixed sealers based on epoxy resin, silicone, calcium hydroxide, zinc oxide-eugenol, glass ionomer, and polyketone. These samples were immersed in chloroform or eucalyptus oil for 30 seconds, 1 minute, 2 minutes, 5 minutes, 10 minutes, and 20 minutes. Then, the mean weight loss was determined and statistically analyzed. With the exception of the silicone, all the sealers showed significantly higher solubilities (P <.05) in chloroform than in eucalyptus oil. Epoxy resin was the most soluble sealer in chloroform. In eucalyptus oil, calcium hydroxide, and zinc oxide-eugenol showed the highest solubility. Under the conditions of this study, chloroform was a far more effective solvent of root canal sealers than eucalyptus oil. Because of the potential hazards of chloroform, further studies on the dissolution of root canal sealers in different solvents seem to be necessary.

New species, hyper-diversity and potential importance of Calonectria spp. from Eucalyptus in South China.

Science.gov (United States)

Lombard, L; Chen, S F; Mou, X; Zhou, X D; Crous, P W; Wingfield, M J

2015-03-01

Plantation forestry is expanding rapidly in China to meet an increasing demand for wood and pulp products globally. Fungal pathogens including species of Calonectria represent a serious threat to the growth and sustainability of this industry. Surveys were conducted in the Guangdong, Guangxi and Hainan Provinces of South China, where Eucalyptus trees in plantations or cuttings in nurseries displayed symptoms of leaf blight. Isolations from symptomatic leaves and soils collected close to infected trees resulted in a large collection of Calonectria isolates. These isolates were identified using the Consolidated Species Concept, employing morphological characters and DNA sequence comparisons for the β-tubulin, calmodulin, histone H3 and translation elongation factor 1-alpha gene regions. Twenty-one Calonectria species were identified of which 18 represented novel taxa. Of these, 12 novel taxa belonged to Sphaero-Naviculate Group and the remaining six to the Prolate Group. Southeast Asia appears to represent a centre of biodiversity for the Sphaero-Naviculate Group and this fact could be one of the important constraints to Eucalyptus forestry in China. The remarkable diversity of Calonectria species in a relatively small area of China and associated with a single tree species is surprising.

EVALUATION OF BIOETHANOL PRODUCTION FROM Eucalyptus WOOD WITH Saccharomyces cerevisiae AND SACSV-10 1

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Sylvia Enid Vazquez

2018-04-01

Full Text Available ABSTRACT Eucalyptus spp. residues of paper industry are a potential lignocellulosic raw material for production of second-generation bioethanol as an alternative to conventional production from cereal crops. Studying the behavior at 40 ºC of a commercial cellulase (Sunson, Eucalyptus sawdust saccharification was carried out under two pH conditions. With the aim to evaluate the bioethanol production from Eucalyptus wood, a strategy combining saccharification and Simultaneous Saccharification and Fermentation (SSF was undertaken at 40 ºC with a thermotolerant Saccharomyces cerevisiae with different substrate and inoculum concentrations, and different nitrogen sources. At last, the process was carried out in optimal conditions with Saccharomyces cerevisiae M522 and SacSV-10. Saccharification produced more free glucose at pH 5, reaching a maximum of 1.5 g/L. Encouraging results were obtained with 500 mg/L of ammonium sulphate as a nitrogen source and 10 % v/v initial inoculum at 106 cfu/mL concentration. Yeast SacSV-10 was not inhibited by phenols present in the culture media using a wood concentration of 10 g/L, but when the solids concentration was increased, the bioprocess yield was compromised. When the process was carried out in optimal conditions the bioethanol production, expressed as the conversion percentage of cellulose to ethanol, was 71.5 % and 73.6 % for M522 and the mutant strain respectively. The studied properties of the mutant strain provide added value to it, which pose new challenges to national companies dedicated to the production and sale of inputs for bioethanol industry.

BVOC emissions from 2 Asian Eucalyptus species,E.camadulensis and E.robusta

Science.gov (United States)

Tsui, J.; Guenther, A. B.; Chan, C. K.; Lau, A. P.

2009-12-01

Eucalyptus species dominate native forests in Australia and are planted over vast regions in Asia and other continents for afforestation and for pulp due to their fast growth rates. However, they have also been identified as high emitters of biogenic volatile organic compounds (BVOCs). BVOCs, when emitted to the atmosphere, react to form air pollutants such as ozone (O3) and secondary organic aerosols (SOA). The large areas of Eucalyptus forests in Australia and Asia, and high BVOC emission rates of Eucalyptus species, imply a potential significant effect of BVOC emissions from Eucalyptus on the air quality of these regions. A better understanding of BVOC emissions from this genus is thus needed. Here we present data of BVOC measurements from E.camadulensis and E.robusta. BVOC emissions of the 2 Eucalyptus species were measured by a branch enclosure approach in an environmental chamber, in which light and temperature were carefully controlled to mimic their changes throughout the day under natural conditions. E. camadulensis was found to emit isoprene, α-pinene, camphene and limonene, while E. robusta was found to emit isoprene, α-pinene, β-pinene, α-phellandrene, 3-carene and ocimene. Diurnal variations in BVOC emissions from the 2 species were observed. The 2 Eucalyptus species were also treated with methyl jasmonate (MeJA), a plant hormone which has found to induce elevated BVOC emissions similar to response to insect attacks in other plant species. The emission profiles of the 2 species before and after MeJA treatment were contrasted to examine the effects of the MeJA on their BVOC emissions. Acknowledgment: This work was supported by the General Research Fund of the Research Grants Council of the Hong Kong Special Administrative Region, China (Project No. 610909).

Chemical composition and antibacterial activities of seven Eucalyptus species essential oils leaves.

Science.gov (United States)

Sebei, Khaled; Sakouhi, Fawzi; Herchi, Wahid; Khouja, Mohamed Larbi; Boukhchina, Sadok

2015-01-19

In this paper, we have studied the essential oils chemical composition of the leaves of seven Eucalyptus species developed in Tunisia. Eucalyptus leaves were picked from trees growing in different arboretums in Tunisia. Choucha and Mrifeg arboretums located in Sedjnene, region of Bizerte (Choucha: E. maideni, E. astrengens et E. cinerea; Mrifeg : E. leucoxylon), Korbous arboretums located in the region of Nabeul, North East Tunisia with sub-humid bioclimate, (E. lehmani), Souiniet-Ain Drahem arboretum located in region of Jendouba (E. sideroxylon, E. bicostata). Essential oils were individually tested against a large panel of microorganisms including Staphylococcus aureus (ATCC 6539), Escherichia coli (ATCC 25922), Enterococcus faecalis (ATCC29212), Listeria ivanovii (RBL 30), Bacillus cereus (ATCC11778). The yield of essential oils ranged from 1.2% to 3% (w/w) for the different Eucalyptus species. All essential oils contain α-pinene, 1,8-cineol and pinocarveol-trans for all Eucalyptus species studied. The 1,8-cineol was the major compound in all species (49.07 to 83.59%). Diameter of inhibition zone of essential oils of Eucalyptus species varied from 10 to 29 mm. The largest zone of inhibition was obtained for Bacillus cereus (E. astrengens) and the lowest for Staphylococcus aureus (E. cinerea). The essential oils from E. maideni, E. astrengens, E. cinerea (arboretum of Bizerte), E. bicostata (arboretum of Aindraham) showed the highest antibacterial activity against Listeria ivanovii and Bacillus cereus. The major constituents of Eucalyptus leaves essential oils are 1,8-cineol (49.07 to 83.59%) and α-pinene (1.27 to 26.35%). The essential oils from E. maideni, E. astrengens, E. cinerea, E. bicostata showed the highest antibacterial activity against Listeria ivanovii and Bacillus cereus, they may have potential applications in food and pharmaceutical products.

Production and development of eucalyptus seedlings in function of doses of phosphorus

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José Henrique Tertulino Rocha

2013-12-01

Full Text Available This study evaluated the effect of phosphorus (P on the survival in the nursery and early development in the field of clonal Eucalyptus urophylla x Eucalyptus grandis seedlings. The experimental design was completely randomized with four treatments and five replicates of 30 plants per replicate. At the end of the cycle (90 days, 15 seedlings were used for determining the dry matter accumulation and nutrient concentration in the shoot. The rest was planted in the field to determine the percentage of survival and early development. The treatments consisted of four doses of P fertilization (0.0, 1.3, 2.6 and 5.2 mg plant-1. To obtain high quality seedlings in conditions similar to this experiment it is required doses of P in the range from 3.6 to 3.8 mg plant-1. Doses greater than 4 mg plant-1 affect the development and quality of eucalyptus seedlings. An adequate phosphorus fertilization of eucalyptus seedlings increase, by about 30%, the percentage of surviving seedlings in the field.

Novel expressed sequences identified in a model of androgen independent prostate cancer

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Jones Steven JM

2007-01-01

Full Text Available Abstract Background Prostate cancer is the most frequently diagnosed cancer in American men, and few effective treatment options are available to patients who develop hormone-refractory prostate cancer. The molecular changes that occur to allow prostate cells to proliferate in the absence of androgens are not fully understood. Results Subtractive hybridization experiments performed with samples from an in vivo model of hormonal progression identified 25 expressed sequences representing novel human transcripts. Intriguingly, these 25 sequences have small open-reading frames and are not highly conserved through evolution, suggesting many of these novel expressed sequences may be derived from untranslated regions of novel transcripts or from non-coding transcripts. Examination of a large metalibrary of human Serial Analysis of Gene Expression (SAGE tags demonstrated that only three of these novel sequences had been previously detected. RT-PCR experiments confirmed that the 6 sequences tested were expressed in specific human tissues, as well as in clinical samples of prostate cancer. Further RT-PCR experiments for five of these fragments indicated they originated from large untranslated regions of unannotated transcripts. Conclusion This study underlines the value of using complementary techniques in the annotation of the human genome. The tissue-specific expression of 4 of the 6 clones tested indicates the expression of these novel transcripts is tightly regulated, and future work will determine the possible role(s these novel transcripts may play in the progression of prostate cancer.

The genome of Eucalyptus grandis

Energy Technology Data Exchange (ETDEWEB)

Myburg, Alexander A.; Grattapaglia, Dario; Tuskan, Gerald A.; Hellsten, Uffe; Hayes, Richard D.; Grimwood, Jane; Jenkins, Jerry; Lindquist, Erika; Tice, Hope; Bauer, Diane; Goodstein, David M.; Dubchak, Inna; Poliakov, Alexandre; Mizrachi, Eshchar; Kullan, Anand R. K.; Hussey, Steven G.; Pinard, Desre; van der Merwe, Karen; Singh, Pooja; van Jaarsveld, Ida; Silva-Junior, Orzenil B.; Togawa, Roberto C.; Pappas, Marilia R.; Faria, Danielle A.; Sansaloni, Carolina P.; Petroli, Cesar D.; Yang, Xiaohan; Ranjan, Priya; Tschaplinski, Timothy J.; Ye, Chu-Yu; Li, Ting; Sterck, Lieven; Vanneste, Kevin; Murat, Florent; Soler, Marçal; Clemente, Hélène San; Saidi, Naijib; Cassan-Wang, Hua; Dunand, Christophe; Hefer, Charles A.; Bornberg-Bauer, Erich; Kersting, Anna R.; Vining, Kelly; Amarasinghe, Vindhya; Ranik, Martin; Naithani, Sushma; Elser, Justin; Boyd, Alexander E.; Liston, Aaron; Spatafora, Joseph W.; Dharmwardhana, Palitha; Raja, Rajani; Sullivan, Christopher; Romanel, Elisson; Alves-Ferreira, Marcio; Külheim, Carsten; Foley, William; Carocha, Victor; Paiva, Jorge; Kudrna, David; Brommonschenkel, Sergio H.; Pasquali, Giancarlo; Byrne, Margaret; Rigault, Philippe; Tibbits, Josquin; Spokevicius, Antanas; Jones, Rebecca C.; Steane, Dorothy A.; Vaillancourt, René E.; Potts, Brad M.; Joubert, Fourie; Barry, Kerrie; Pappas, Georgios J.; Strauss, Steven H.; Jaiswal, Pankaj; Grima-Pettenati, Jacqueline; Salse, Jérôme; Van de Peer, Yves; Rokhsar, Daniel S.; Schmutz, Jeremy

2014-06-11

Eucalypts are the world s most widely planted hardwood trees. Their broad adaptability, rich species diversity, fast growth and superior multipurpose wood, have made them a global renewable resource of fiber and energy that mitigates human pressures on natural forests. We sequenced and assembled >94% of the 640 Mbp genome of Eucalyptus grandis into its 11 chromosomes. A set of 36,376 protein coding genes were predicted revealing that 34% occur in tandem duplications, the largest proportion found thus far in any plant genome. Eucalypts also show the highest diversity of genes for plant specialized metabolism that act as chemical defence against biotic agents and provide unique pharmaceutical oils. Resequencing of a set of inbred tree genomes revealed regions of strongly conserved heterozygosity, likely hotspots of inbreeding depression. The resequenced genome of the sister species E. globulus underscored the high inter-specific genome colinearity despite substantial genome size variation in the genus. The genome of E. grandis is the first reference for the early diverging Rosid order Myrtales and is placed here basal to the Eurosids. This resource expands knowledge on the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.

Discount Rate and Timber Rotation: the Case of Eucalyptus Saligna

OpenAIRE

Camilo Restrepo; Mauricio Alviar

2010-01-01

Eucalyptus is one of the most important economical and environmental species in Colombia. The main goal of this article is to study the relationship between the discount rate and the year of Eucalyptus Saligna optimal harvest, through the Fisher and Hotelling’s method. The methodology consists of calculating the maximum Net Present Value and performing a sensitivity analysis between the year of harvest and the discount rate. The area of study is located in the eastern region of the state of A...

Projecting potential adoption of genetically engineered freeze-tolerant Eucalyptus in the United States

Science.gov (United States)

David N. Wear; Ernest Dixon IV; Robert C. Abt; Navinder Singh

2015-01-01

Development of commercial Eucalyptus plantations has been limited in the United States because of the species’ sensitivity to freezing temperatures. Recently developed genetically engineered clones of a Eucalyptus hybrid, which confer freeze tolerance, could expand the range of commercial plantations. This study explores how...

NUTRIENTS POOL IN CONSORTIA OF Eucalyptus urograndis, Acacia mearnsii AND Zea mays

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Márcio Viera

2013-08-01

Full Text Available http://dx.doi.org/10.5902/1980509810543This study aimed to determine the nutrient pool in monospecific and mixed stands of Eucalyptus urograndis and Acacia mearnsii in a consortium with Zea mays.The amount determination of nutrients of forest species was carried out in the treatments: 100E (100% of eucalyptus; 100A (100% of black wattle and 50E:50A (50% of eucalyptus + 50% of black-wattle. On the other hand, for corn, it was carried out in all treatments (100E; 100A, 50E:50A; 75E:25A – 75% of eucalyptus + 25% black-wattle and 25E:75A – 25% of eucalyptus + 75% of black wattle. The delimitation adopted was the one of a randomized block with three replications. The magnitude of the nutrient pool in the agrossilvicultural systems biomass was: N> K > Ca > Mg > P > S, for macronutrients, and Mn > Fe > Zn > B > Cu, for micronutrients. Due to the great export of nutrients through the corn harvest, residues should be kept and it is necessary to make a nutritional reposition, mainly with P, N, K, S and Zn in the following crops, because of the higher amount that are exported with the extraction of the corn tang, which reaches 75.3; 60.6; 59.9; 55.8 e 53.8%, respectively, in relation to the total stocked in the biomass.

A review of recommendations for sequencing receptive and expressive language instruction.

Science.gov (United States)

Petursdottir, Anna Ingeborg; Carr, James E

2011-01-01

We review recommendations for sequencing instruction in receptive and expressive language objectives in early and intensive behavioral intervention (EIBI) programs. Several books recommend completing receptive protocols before introducing corresponding expressive protocols. However, this recommendation has little empirical support, and some evidence exists that the reverse sequence may be more efficient. Alternative recommendations include teaching receptive and expressive skills simultaneously (M. L. Sundberg & Partington, 1998) and building learning histories that lead to acquisition of receptive and expressive skills without direct instruction (Greer & Ross, 2008). Empirical support for these recommendations also is limited. Future research should assess the relative efficiency of receptive-before-expressive, expressive-before-receptive, and simultaneous training with children who have diagnoses of autism spectrum disorders. In addition, further evaluation is needed of the potential benefits of multiple-exemplar training and other variables that may influence the efficiency of receptive and expressive instruction.

History and Status of Eucalyptus Improvement in Florida

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Donald L. Rockwood

2012-01-01

Full Text Available The first organized Eucalyptus research in Florida was begun by the Florida Forests Foundation in 1959 in southern Florida. This research was absorbed by the USDA Forest Service and the Florida Division of Forestry in 1968. In the early 1970s, the Eucalyptus Research Cooperative formed to provide additional support emphasized E. grandis, E. robusta, E. camaldulensis, and E. tereticornis and developed cultural practices for commercial plantations in southern Florida. In 1978, this cooperative united with the Hardwood Research Cooperative at North Carolina State University until 1985 when the 14-year effort ended after three severe freezes from 1983 to 1985. Eucalyptus planting and research were continued with a Florida-wide focus by the University of Florida and collaborators starting in 1980. The collective accomplishments in terms of genetic resources and commercial planting are summarized. For example, fast-growing, freeze-resilient E. grandis seedlings are produced by advanced generation seed orchards, five E. grandis cultivars are commercially available, as are E. amplifolia and Corymbia torelliana seeds. Genetic improvement of these and other species is ongoing due to beneficial collaborations. Short Rotation Woody Crop systems are promising for increasing productivity and extending uses beyond conventional pulpwood to applications such as windbreaks, dendroremediation, and energy wood.

Selective Herbicides for Cultivation of Eucalyptus urograndis Clones

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Patrick J. Minogue

2015-01-01

Full Text Available Competition control is essential for successful eucalyptus plantation establishment, yet few selective herbicides have been identified. Five herbicides, flumioxazin, imazamox, imazapic, oxyfluorfen, and sulfometuron methyl, were evaluated for selective weed control in the establishment of genetically modified frost tolerant Eucalyptus urograndis clones. Herbicides were applied at two or three rates, either before or after weed emergence, and compared to a nontreated control and to near-complete weed control obtained with glyphosate directed sprays. Applications prior to weed emergence were most effective for weed control and, with the exception of imazapic, all resulted in enhanced eucalyptus growth relative to the nontreated control. Among postemergent treatments, only imazamox enhanced stem volume. Among selective herbicide treatments, preemergent 2240 g ha−1 oxyfluorfen produced the best growth response, resulting in stem volume index that was 860% greater than the nontreated control, although only 15% of the volume index obtained with near-complete weed control. Imazapic was the most phytotoxic of all herbicides, resulting in 40% mortality when applied preemergent. Survival was 100% for all other herbicide treatments. This research found the previously nontested herbicides imazamox and imazapic to be effective for selective weed control and refined application rate and timing of five herbicides for use in clonal plantations.

Utilización de Eucalyptus spp. Alternativas de plantaciones uruguayas para pulpa Kraft

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Javier Doldán

2011-05-01

Full Text Available Las plantaciones de Eucalyptus globulus han mostrado desiguales tasas de crecimiento en diferentes regiones de Uruguay. Esto ha motivado la búsqueda de otros orígenes de semilla y especies para la producción de pulpa de celulosa. Propiedades papeleras de las pulpas blanqueadas (ECF de especies alternativas llevan a intuir que podrían ser atractivas para mercados de pulpa de fibra corta. En este trabajo se realiza un comparativo del E. grandis, E. dunnii, E. maidenii y E. globulus (procedencia de semilla “Jeeralang” con el E. globulus predominante en Uruguay. Se discute el potencial de estas maderas como base para una mezcla en cocción, basándose en el análisis de propiedades físicas (densidad aparente básica, propiedades pulpables (rendimiento, carga de álcali activo en cocción Kraft y consumo de madera y propiedades papeleras. En trabajos previos se han encontrado diferencias significativas entre el comportamiento pulpable del Eucalyptus globulus y Eucalyptus maidenii, sugiriendo que nosería recomendable mezclar estas especies. La misma conclusión se podría extender a las especies de Eucalyptus estudiadas. Sin embargo, teniendo en cuenta los similares requerimientos en las cargas de álcali activo, la mezcla entre especies alternativas podría ser aplicada.AbstractEucalyptus globulus plantations have shown different growth rates in different sites in Uruguay. This fact has triggered the search for other pulp wood species and seed provenance. Paper making properties of ECF bleached pulps of alternative speciessuggest that these species could be perfectly used as hardwood bleached pulp raw materials. This study intends to compare alternativeUruguayan pulpwood species E. grandis, E. dunnii, E. maidenii and “Jeeralang” a seed provenance of E. globulus to the E. globulus most widely cultivated in the country. Physical properties of wood (Basic Density, Kraft pulping performance (pulp yield, active alkali and wood consumption

Effect of Eucalyptus Oil Inhalation on Pain and Inflammatory Responses after Total Knee Replacement: A Randomized Clinical Trial

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Yang Suk Jun

2013-01-01

Full Text Available Eucalyptus oil has been reported effective in reducing pain, swelling, and inflammation. This study aimed to investigate the effects of eucalyptus oil inhalation on pain and inflammatory responses after total knee replacement (TKR surgery. Participants were randomized 1 : 1 to intervention group (eucalyptus inhalation group or control group (almond oil inhalation group. Patients inhaled eucalyptus or almond oil for 30 min of continuous passive motion (CPM on 3 consecutive days. Pain on a visual analog scale (VAS, blood pressure, heart rate, C-reactive protein (CRP concentration, and white blood cell (WBC count were measured before and after inhalation. Pain VAS on all three days (P<.001 and systolic (P<.05 and diastolic (P=.03 blood pressure on the second day were significantly lower in the group inhaling eucalyptus than that inhaling almond oil. Heart rate, CRP, and WBC, however, did not differ significantly in the two groups. In conclusion, inhalation of eucalyptus oil was effective in decreasing patient's pain and blood pressure following TKR, suggesting that eucalyptus oil inhalation may be a nursing intervention for the relief of pain after TKR.

Eucalyptus essential oil as a natural food preservative: in vivo and in vitro antiyeast potential.

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Tyagi, Amit Kumar; Bukvicki, Danka; Gottardi, Davide; Tabanelli, Giulia; Montanari, Chiara; Malik, Anushree; Guerzoni, Maria Elisabetta

2014-01-01

In this study, the application of eucalyptus essential oil/vapour as beverages preservative is reported. The chemical composition of eucalyptus oil was determined by gas chromatography-mass spectrometry (GC-MS) and solid phase microextraction GC-MS (SPME/GC-MS) analyses. GC-MS revealed that the major constituents were 1,8-cineole (80.5%), limonene (6.5%), α-pinene (5%), and γ-terpinene (2.9%) while SPME/GC-MS showed a relative reduction of 1,8-cineole (63.9%) and an increase of limonene (13.8%), α-pinene (8.87%), and γ-terpinene (3.98%). Antimicrobial potential of essential oil was initially determined in vitro against 8 different food spoilage yeasts by disc diffusion, disc volatilization, and microdilution method. The activity of eucalyptus vapours was significantly higher than the eucalyptus oil. Minimum inhibitory concentration (MIC) and minimum fungicidal concentration (MFC) varied from 0.56 to 4.50 mg/mL and from 1.13 to 9 mg/mL, respectively. Subsequently, the combined efficacy of essential oil and thermal treatment were used to evaluate the preservation of a mixed fruit juice in a time-dependent manner. These results suggest eucalyptus oil as a potent inhibitor of food spoilage yeasts not only in vitro but also in a real food system. Currently, this is the first report that uses eucalyptus essential oil for fruit juice preservation against food spoiling yeast.

Chemical Composition and in-Vitro Evaluation of the Antimicrobial and Antioxidant Activities of Essential Oils Extracted from Seven Eucalyptus Species.

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Ghaffar, Abdul; Yameen, Muhammad; Kiran, Shumaila; Kamal, Shagufta; Jalal, Fatima; Munir, Bushra; Saleem, Sadaf; Rafiq, Naila; Ahmad, Aftab; Saba, Iram; Jabbar, Abdul

2015-11-18

Eucalyptus is well reputed for its use as medicinal plant around the globe. The present study was planned to evaluate chemical composition, antimicrobial and antioxidant activity of the essential oils (EOs) extracted from seven Eucalyptus species frequently found in South East Asia (Pakistan). EOs from Eucalyptus citriodora, Eucalyptus melanophloia, Eucalyptus crebra, Eucalyptus tereticornis, Eucalyptus globulus, Eucalyptus camaldulensis and Eucalyptus microtheca were extracted from leaves through hydrodistillation. The chemical composition of the EOs was determined through GC-MS-FID analysis. The study revealed presence of 31 compounds in E. citriodora and E. melanophloia, 27 compounds in E. crebra, 24 compounds in E. tereticornis, 10 compounds in E. globulus, 13 compounds in E. camaldulensis and 12 compounds in E. microtheca. 1,8-Cineole (56.5%), α-pinene (31.4%), citrinyl acetate (13.3%), eugenol (11.8%) and terpenene-4-ol (10.2%) were the highest principal components in these EOs. E. citriodora exhibited the highest antimicrobial activity against the five microbial species tested (Staphylococcus aureus, Bacillus subtilis, Escherichia coli, Aspergillus niger and Rhizopus solani). Gram positive bacteria were found more sensitive than Gram negative bacteria to all EOs. The diphenyl-1-picrylhydazyl (DPPH) radical scavenging activity and percentage inhibition of linoleic acid oxidation were highest in E. citriodora (82.1% and 83.8%, respectively) followed by E. camaldulensis (81.9% and 83.3%, respectively). The great variation in chemical composition of EOs from Eucalyptus, highlight its potential for medicinal and nutraceutical applications.

Chemical Composition and in-Vitro Evaluation of the Antimicrobial and Antioxidant Activities of Essential Oils Extracted from Seven Eucalyptus Species

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Abdul Ghaffar

2015-11-01

Full Text Available Eucalyptus is well reputed for its use as medicinal plant around the globe. The present study was planned to evaluate chemical composition, antimicrobial and antioxidant activity of the essential oils (EOs extracted from seven Eucalyptus species frequently found in South East Asia (Pakistan. EOs from Eucalyptus citriodora, Eucalyptus melanophloia, Eucalyptus crebra, Eucalyptus tereticornis, Eucalyptus globulus, Eucalyptus camaldulensis and Eucalyptus microtheca were extracted from leaves through hydrodistillation. The chemical composition of the EOs was determined through GC-MS-FID analysis. The study revealed presence of 31 compounds in E. citriodora and E. melanophloia, 27 compounds in E. crebra, 24 compounds in E. tereticornis, 10 compounds in E. globulus, 13 compounds in E. camaldulensis and 12 compounds in E. microtheca. 1,8-Cineole (56.5%, α-pinene (31.4%, citrinyl acetate (13.3%, eugenol (11.8% and terpenene-4-ol (10.2% were the highest principal components in these EOs. E. citriodora exhibited the highest antimicrobial activity against the five microbial species tested (Staphylococcus aureus, Bacillus subtilis, Escherichia coli, Aspergillus niger and Rhizopus solani. Gram positive bacteria were found more sensitive than Gram negative bacteria to all EOs. The diphenyl-1-picrylhydazyl (DPPH radical scavenging activity and percentage inhibition of linoleic acid oxidation were highest in E. citriodora (82.1% and 83.8%, respectively followed by E. camaldulensis (81.9% and 83.3%, respectively. The great variation in chemical composition of EOs from Eucalyptus, highlight its potential for medicinal and nutraceutical applications.

Studies on the antidandruff activity of the essential oil of coleus amboinicus and eucalyptus globulus

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P.Selvakumar

2012-10-01

Full Text Available Objective: To determine the effect of the essential oil of Coleus amboinicus and Eucalyptus globules as potential antidandruff agent. Methods: Fresh leaves of Coleus amboinicus and Eucalyptus globules were collected from the Horticultural Research Station, Yercaud, Salem, Tamil Nadu, India. The collected leaves were washed thoroughly and shade dried for 7-10 days. The essential oils from both the dried plant leaves were obtained by hydro distillation procedure. The chemical compositions of hydro distilled essential oils were analyzed by Gas Chromatography-Mass spectrometry (GC-MS. The pure essential oils and the essential oils diluted with coconut oil of the two plants were used to check antidandruff activity against the dandruff causing fungus Malassezia furfur by agar well diffusion assay. Results: The average yield of essential oil from Coleus amboinicus (0.89% and Eucalyptus globules (0.77%. The results of GC-MS revealed that the presence of eight compounds from Coleus amboinicus essential oil and five constituents from Eucalyptus globules representing 90.45% and 96.32% of the total oil respectively. The major component was identified as Thymol (phenolic rich compocnd (41.3% in Coleus amboinicus and in Eucalyptus globules the major constituents was 1-8, Cineol (91.61%. In the antidandruff activity the broad range of inhibitory zone was observed in Eucalyptus globules (37mm oil compare to Coleus amboinicus (31mm. Ketaconazole based shampoo used as a standard. Conclusion: This study would direct to the establishment of a natural compound from Coleus amboinicus and Eucalyptus globules as an antidandruff agent which can be used for the production of potential antifungal drug and novel pharmaceutical and cosmeceutical leads.

The Effects of Coupling Agents on the Mechanical and Thermal Properties of Eucalyptus Flour/HDPE Composite

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Metanawin Siripan

2015-01-01

Full Text Available The aim of this research was to study the effects of the coupling agents, FusabondTM E-528 (polyethylene-grafted maleic anhydride; PE-g-MA, MA and Amino Silane (Si, on the thermal properties, and mechanical properties of Eucalyptus flour-HDPE composite. Variation of the Eucalyptus flour contents in the HDPE resulted in properties of the composite. With increasing in the contents of Eucalyptus flour in polymer matrix, the mechanical properties of the HDPE composite decreased in EU-MA series samples while they were gradually decreased in EU-Si series samples. SEM micrographs showed the fracture surface of the HDPE/Eucalyptus composite at different ratios of Eucalyptus flour. SEM micrograpgh exhibited the dispersion of EU flour in polymer matrix. The samples of both coupling agents showed an increase in interfacial adhesion, observed for the considerable decreased of gaps between the matrix and the dispersed phase. However, the EU-MA sample appeared to be more uniformly than the EU-Si sample.

Heartwood and sapwood in eucalyptus trees: non-conventional approach to wood quality.

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Cherelli, Sabrina G; Sartori, Maria Márcia P; Próspero, André G; Ballarin, Adriano W

2018-01-01

This study evaluated the quality of heartwood and sapwood from mature trees of three species of Eucalyptus, by means of the qualification of their proportion, determination of basic and apparent density using non-destructive attenuation of gamma radiation technique and calculation of the density uniformity index. Six trees of each species (Eucalyptus grandis - 18 years old, Eucalyptus tereticornis - 35 years old and Corymbia citriodora - 28 years old) were used in the experimental program. The heartwood and sapwood were delimited by macroscopic analysis and the calculation of areas and percentage of heartwood and sapwood were performed using digital image. The uniformity index was calculated following methodology which numerically quantifies the dispersion of punctual density values of the wood around the mean density along the radius. The percentage of the heartwood was higher than the sapwood in all species studied. The density results showed no statistical difference between heartwood and sapwood. Differently from the density results, in all species studied there was statistical differences between uniformity indexes for heartwood and sapwood regions, making justifiable the inclusion of the density uniformity index as a quality parameter for Eucalyptus wood.

MOLYBDENUM CATALYZED ACID PEROXIDE BLEACHING OF EUCALYPTUS KRAFT PULP

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Marcos S. Rabelo

2008-08-01

Full Text Available Molybdenum catalyzed peroxide bleaching (PMo Stage consists of pulp treatment with hydrogen peroxide under acidic conditions in the presence of a molybdenum catalyst. Molybdenum is applied in catalytic doses (50-200 mg/kg pulp and may originate from various sources, including (NH46Mo7O24.4H2O, Na2MoO4.2H2O, siliconmolybdate, etc. This work is aimed at optimizing the PMo stage and evaluating its industrial application in the OAZDP sequence. Optimum PMo stage conditions for bleaching eucalyptus pulp were 90 ºC, pH 3.5, 2 h, 0.1 kg/adt Mo and 5 kg/adt H2O2. The PMo stage was more efficient to remove pulp hexenuronic acids than lignin. Its efficiency decreased with increasing pH in the range of 1.5-5.5, while it increased with increasing temperature and peroxide and molybdenum doses. The application of the PMo stage as replacement for the A-stage of the AZDP sequence significantly decreased chlorine dioxide demand. The PMo stage caused a decrease of 20-30% in the generation of organically bound chlorine. The quality parameters of the pulp produced during the PMo stage mill trial were comparable to those obtained with the reference A-stage.

MODEL OF A PROCESS FOR DRYING Eucalyptus spp AT HIGH TEMPERATURES

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P. C. C. PINHEIRO

1998-12-01

Full Text Available A mathematical model of a process for drying of Eucalyptus spp is presented. This model was based on fundamental heat and mass transfer equations and it was numerically solved using a segregated finite volume method. Software in the FORTRAN language was developed to solve the mathematical model. The kinetic parameters of drying for Eucalyptus spp were experimentally obtained by isothermal thermogravimetry (TG. The theoretical results generated using the mathematical model were validated by experimental data.

Breeding Eucalyptus for disease resistance

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Edival A.V. Zauza; Acelino Couto Alfenas; Lúcio Mauro da Silva Guimarães; João Flávio da Silva

2012-01-01

Eucalyptus plantations cover about 1.5 percent of the agricultural area in Brazil, and contribute to 4 percent of GDP and 3 percent in exports of forest products. Technological and research advances in silviculture and genetic improvement have increased productivity up to 80 m³ of wood/ha/year, with an average of 35 to 45 m³/ha/year. The greatest...

Herbicide site preparation and release options for eucalyptus plantation establishment in the western gulf

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Michael A. Blazier; John Johnson; Eric L. Taylor; Brad Osbon

2012-01-01

Cold-tolerant species of eucalyptus (Eucalyptus spp.) are increasingly grown in the Western Gulf region as short-rotation pulpwood feedstock. Operational chemical suppression of competing vegetation has been relatively costly and inefficient because it requires frequent applications of glyphosate applied via backpack sprayers. A series of studies...

Eucalyptus Essential Oil as a Natural Food Preservative: In Vivo and In Vitro Antiyeast Potential

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Bukvicki, Danka; Gottardi, Davide; Malik, Anushree; Guerzoni, Maria Elisabetta

2014-01-01

In this study, the application of eucalyptus essential oil/vapour as beverages preservative is reported. The chemical composition of eucalyptus oil was determined by gas chromatography-mass spectrometry (GC-MS) and solid phase microextraction GC-MS (SPME/GC-MS) analyses. GC-MS revealed that the major constituents were 1,8-cineole (80.5%), limonene (6.5%), α-pinene (5%), and γ-terpinene (2.9%) while SPME/GC-MS showed a relative reduction of 1,8-cineole (63.9%) and an increase of limonene (13.8%), α-pinene (8.87%), and γ-terpinene (3.98%). Antimicrobial potential of essential oil was initially determined in vitro against 8 different food spoilage yeasts by disc diffusion, disc volatilization, and microdilution method. The activity of eucalyptus vapours was significantly higher than the eucalyptus oil. Minimum inhibitory concentration (MIC) and minimum fungicidal concentration (MFC) varied from 0.56 to 4.50 mg/mL and from 1.13 to 9 mg/mL, respectively. Subsequently, the combined efficacy of essential oil and thermal treatment were used to evaluate the preservation of a mixed fruit juice in a time-dependent manner. These results suggest eucalyptus oil as a potent inhibitor of food spoilage yeasts not only in vitro but also in a real food system. Currently, this is the first report that uses eucalyptus essential oil for fruit juice preservation against food spoiling yeast. PMID:25177704

Eucalyptus Essential Oil as a Natural Food Preservative: In Vivo and In Vitro Antiyeast Potential

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Amit Kumar Tyagi

2014-01-01

Full Text Available In this study, the application of eucalyptus essential oil/vapour as beverages preservative is reported. The chemical composition of eucalyptus oil was determined by gas chromatography-mass spectrometry (GC-MS and solid phase microextraction GC-MS (SPME/GC-MS analyses. GC-MS revealed that the major constituents were 1,8-cineole (80.5%, limonene (6.5%, α-pinene (5%, and γ-terpinene (2.9% while SPME/GC-MS showed a relative reduction of 1,8-cineole (63.9% and an increase of limonene (13.8%, α-pinene (8.87%, and γ-terpinene (3.98%. Antimicrobial potential of essential oil was initially determined in vitro against 8 different food spoilage yeasts by disc diffusion, disc volatilization, and microdilution method. The activity of eucalyptus vapours was significantly higher than the eucalyptus oil. Minimum inhibitory concentration (MIC and minimum fungicidal concentration (MFC varied from 0.56 to 4.50 mg/mL and from 1.13 to 9 mg/mL, respectively. Subsequently, the combined efficacy of essential oil and thermal treatment were used to evaluate the preservation of a mixed fruit juice in a time-dependent manner. These results suggest eucalyptus oil as a potent inhibitor of food spoilage yeasts not only in vitro but also in a real food system. Currently, this is the first report that uses eucalyptus essential oil for fruit juice preservation against food spoiling yeast.

Antifungal and antimycotoxigenic activity of essential oils from Eucalyptus globulus, Thymus capitatus and Schinus molle

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Ana Karenth LÓPEZ-MENESES

2015-12-01

Full Text Available Abstract Essential oils (EO of eucalyptus (Eucalyptus globulus L., thymus (Thymus capitatus L. pirul (Schinus molle L. were evaluated for their efficacy to control Aspergillus parasiticus and Fusarium moniliforme growth and their ability to produce mycotoxins. Data from kinetics radial growth was used to obtain the half maximal inhibitory concentration (IC50. The IC50 was used to evaluate spore germination kinetic and mycotoxin production. Also, spore viability was evaluated by the MTT assay. All EO had an effect on the radial growth of both species. After 96 h of incubation, thymus EO at concentrations of 1000 and 2500 µL L–1 totally inhibited the growth of F. moniliforme and A. parasiticus, respectively. Eucalyptus and thymus EO significantly reduced spore germination of A. parasiticus. Inhibition of spore germination of F. moniliforme was 84.6, 34.0, and 30.6% when exposed to eucalyptus, pirul, and thymus EO, respectively. Thymus and eucalyptus EO reduced aflatoxin (4% and fumonisin (31% production, respectively. Spore viability was affected when oils concentration increased, being the thymus EO the one that reduced proliferation of both fungi. Our findings suggest that EO affect F. moniliforme and A. parasiticus development and mycotoxin production.

Study on the Modification of Bleached Eucalyptus Kraft Pulp Using Birch Xylan

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Wenjia Han; Chuanshan Zhao; Thomas Elder; Rendang Yang; Dongho Kim; Yunqiao Pu; Jeffery Hsieh; Arthur J. Ragauskas

2012-01-01

In this study, birch xylan was deposited onto elementally chlorine free (ECF) bleached eucalyptus kraft pulp, and the corresponding changes in physical properties were determined. An aqueous 5% birch xylan solution at pH 9 was added to 5 wt% slurry of bleached kraft eucalyptus fibers, with stirring at 70 C for 15 min after which the pH was adjusted to 5–6. The xylan...

Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range.

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Massa, Sónia I; Pearson, Gareth A; Aires, Tânia; Kube, Michael; Olsen, Jeanine L; Reinhardt, Richard; Serrão, Ester A; Arnaud-Haond, Sophie

2011-09-01

Predicted global climate change threatens the distributional ranges of species worldwide. We identified genes expressed in the intertidal seagrass Zostera noltii during recovery from a simulated low tide heat-shock exposure. Five Expressed Sequence Tag (EST) libraries were compared, corresponding to four recovery times following sub-lethal temperature stress, and a non-stressed control. We sequenced and analyzed 7009 sequence reads from 30min, 2h, 4h and 24h after the beginning of the heat-shock (AHS), and 1585 from the control library, for a total of 8594 sequence reads. Among 51 Tentative UniGenes (TUGs) exhibiting significantly different expression between libraries, 19 (37.3%) were identified as 'molecular chaperones' and were over-expressed following heat-shock, while 12 (23.5%) were 'photosynthesis TUGs' generally under-expressed in heat-shocked plants. A time course analysis of expression showed a rapid increase in expression of the molecular chaperone class, most of which were heat-shock proteins; which increased from 2 sequence reads in the control library to almost 230 in the 30min AHS library, followed by a slow decrease during further recovery. In contrast, 'photosynthesis TUGs' were under-expressed 30min AHS compared with the control library, and declined progressively with recovery time in the stress libraries, with a total of 29 sequence reads 24h AHS, compared with 125 in the control. A total of 4734 TUGs were screened for EST-Single Sequence Repeats (EST-SSRs) and 86 microsatellites were identified. Copyright © 2011 Elsevier B.V. All rights reserved.

Eucalyptus-Palm Kernel Oil Blends: A Complete Elimination of Diesel in a 4-Stroke VCR Diesel Engine

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Srinivas Kommana

2015-01-01

Full Text Available Fuels derived from biomass are mostly preferred as alternative fuels for IC engines as they are abundantly available and renewable in nature. The objective of the study is to identify the parameters that influence gross indicated fuel conversion efficiency and how they are affected by the use of biodiesel relative to petroleum diesel. Important physicochemical properties of palm kernel oil and eucalyptus blend were experimentally evaluated and found within acceptable limits of relevant standards. As most of vegetable oils are edible, growing concern for trying nonedible and waste fats as alternative to petrodiesel has emerged. In present study diesel fuel is completely replaced by biofuels, namely, methyl ester of palm kernel oil and eucalyptus oil in various blends. Different blends of palm kernel oil and eucalyptus oil are prepared on volume basis and used as operating fuel in single cylinder 4-stroke variable compression ratio diesel engine. Performance and emission characteristics of these blends are studied by varying the compression ratio. In the present experiment methyl ester extracted from palm kernel oil is considered as ignition improver and eucalyptus oil is considered as the fuel. The blends taken are PKE05 (palm kernel oil 95 + eucalyptus 05, PKE10 (palm kernel oil 90 + eucalyptus 10, and PKE15 (palm kernel 85 + eucalyptus 15. The results obtained by operating with these fuels are compared with results of pure diesel; finally the most preferable combination and the preferred compression ratio are identified.

Stimulatory effect of eucalyptus essential oil on the germination and early growth of Eucalyptus grandis seedlings Efeito estimulante do óleo essencial de eucalipto na germinação e crescimento inicial de mudas de Eucalyptus grandis

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Ricardo Bemfica Steffen

2010-12-01

Full Text Available

The use of essential oil and extracts from plants is becoming an efficient alternative in the biostimulation on growth and protection of plants. The aim of this work was to evaluate the use of leaf essential oil of Eucalyptus grandis on the germination and the  development of Eucalyptus grandis seedlings in nursery conditions. The eucalyptus seeds were exposed to the concentrations of 0, 10, 25, 50, 75 and 100 μL L-1 of the essential oil in controlled conditions. The eucalyptus seedlings were sprayed with 0, 20, 30, 40, 50 and 60 μL L-1 of the essential oil per plant, at intervals of seven days. The effect of this application on the seedling development were analyzed after 30 and 60 days. The results show that the germination was significantly higher when the seeds were exposed to 25 μL L-1 of the essential oil. The application of essential oil in the concentration of 30 and 40 μL L-1 provided higher growth of the aerial part and of the roots in greenhouse conditions, being an effective alternative to biostimulation the vegetative growth of eucalyptus seedlings.

doi: 10.4336/2010.pfb.30.63.199

Potential of Eucalyptus Oil as Repellent against House Rat, Rattus rattus

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Thind, Ramandeep Kaur; Mahal, Amrit Kaur

2014-01-01

Rodent repellents are chemicals which by taste or odour or possibly by both will prevent animal from feeding or gnawing. Such substances may be used in protecting an area from rodent infestation or in protecting packaged food, packing materials, electric cables, and other important vulnerable materials. Mature and healthy house rat, Rattus rattus of both sexes, was exposed to 5, 10, and 20% eucalyptus oil applied as spray in laboratory pens in bichoice tests. Each concentration was applied through three different modes of application, that is, daily, once, and alternatively in a week. Repellent effect of the oil was assessed based on food consumption from treated and untreated sides for four days. In overall, food consumption was significantly (P eucalyptus oil. Present studies reveal the potential of eucalyptus oil in repelling away R. rattus; however, further studies may be conducted to enhance the persistence of repellent effect for longer period of time. PMID:24523633

CARACTERÍSTICAS TECNOLÓGICAS DAS MADEIRAS DE Eucalyptus grandis W.Hill ex Maiden E Eucalyptus cloeziana F. Muell VISANDO AO SEU APROVEITAMENTO NA INDÚSTRIA MOVELEIRA

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Ailton Teixeira do Vale

2006-07-01

Full Text Available Este trabalho se desenvolveu na Universidade de Brasília e no Laboratório de Produtos Florestais (IBAMA, Brasília, DF. Foram estudadas duas espécies de eucalipto (Eucalyptus grandis W.Hill ex Maiden e Eucalyptus cloeziana para confecção de peças mobiliárias. A madeira de E. grandis apresenta propriedades físicas (densidade e retratibilidade e mecânicas (flexão estática e dureza extremamente positivas para a indústria moveleira, sendo complementado por seu bom desempenho perante equipamentos e máquinas, além de receber bem produtos de acabamento. A cor da madeira e o seu desenho levaram os consumidores a mostrar ótima aceitação do móvel fabricado com a espécie. A madeira de Eucalyptus cloeziana, apesar de mostrar propriedades físicas e mecânicas com valores mais elevados que as do Eucalyptus grandis W.Hill ex Maiden, apresenta características desejadas para indústria moveleira. A sua coloração cinza oliva é uma opção para o consumidor. Alguns cuidados especiais com essa espécie deverão ser tomados durante operações com máquinas e equipamentos. Os valores da propriedade dureza apresentados por essa madeira a indicam para fabricação de piso.

Produção de biomassa e remoção de nutrientes em povoamentos de Eucalyptus camaldulensis Dehnh, Eucalyptus grandis hill ex Maiden e Eucalyptus torelliana F. Muell, plantados em Anhembí, SP.

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Mauro Valdir Schumacher

2009-09-01

Full Text Available Normal 0 21 false false false MicrosoftInternetExplorer4 Neste trabalho estudou-se a distribuição de biomassa e a quantidade de nutrientes estocados nos diferentes compartimentos (folhas, ramos, casca e lenho das árvores de Eucalyptus camaldulensis Dehnh, Eucalyptus grandis Hill ex Maiden e Eucalyptus torelliana F. Muell com 9, 9 e 12 anos de idade, respectivamente, plantados em solos de textura arenosa e baixa fertilidade, em Anhembi - SP. A espécie E. grandis foi a que apresentou a maior produção de biomassa para todos os compartimentos analisados, com exceção dos ramos grossos. Nas três espécies o tronco (casca + lenho representou em média 90% da biomassa acima do solo. Os nutrientes concentraram-se de forma decrescente nas folhas, ramos, casca e lenho. As copas das árvores foram responsáveis pelo acúmulo de, aproximadamente, 24% dos nutrientes contidos na biomassa total das árvores. Na casca encontram-se as maiores quantidades de cálcio, aproximadamente 60% do total. A espécie E. grandis removeu do solo a maior quantidade de nutrientes, desenvolvendo através da queda de folhedo menores quantidades que as outras espécies. Desta forma cuidados especiais deverão ser dispensados para garantir a produtividade das rotações futuras.

Phytotoxic Activity and Chemical Composition of Aqueous Volatile Fractions from Eucalyptus Species

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Zhang, Jinbiao; An, Min; Wu, Hanwen; Liu, De Li; Stanton, Rex

2014-01-01

The essential oils from four Eucalyptus species (E. spathulata, E. salubris, E. brockwayii and E. dundasii) have been previously confirmed to have stronger inhibitory effects on germination and seedling growth of silverleaf nightshade (Solanum elaeagnifolium Cav.). The aqueous volatile fractions (AVFs) were the water soluble volatile fractions produced together with the essential oils (water insoluble fractions) during the steam distillation process. The aim of this study was to further assess the phytotoxicity of AVFs from the four Eucalyptus species and their chemical composition. The fresh leaves of the four Eucalyptus species were used for the extraction of AVFs. The AVFs were tested for their phytotoxic effects on the perennial weed, silverleaf nightshade under laboratory conditions. The chemical compositions of the AVFs were determined by gas chromatograph–mass spectrometry (GC-MS). Our results showed that the AVFs had strong inhibition on the germination and seedling growth of silverleaf nightshade. The inhibition index increased with the increasing concentrations of AVFs. The inhibitory effects of the AVFs varied between different Eucalyptus species. The AVF from E. salubris demonstrated the highest inhibitory activity on the weed tested, with complete inhibition on germination and seedling growth at a concentration of 75%. The GC-MS analysis revealed that 1,8-cineole, isopentyl isovalerate, isomenthol, pinocarvone, trans-pinocarveol, alpha-terpineol and globulol were the main compounds in the AVFs. These results indicated that all AVFs tested had differential inhibition on the germination and seedling growth of silverleaf nightshade, which could be due to the joint effects of compounds present in the AVFs as these compounds were present in different quantities and ratio between Eucalyptus species. PMID:24681490

Phytotoxic activity and chemical composition of aqueous volatile fractions from Eucalyptus species.

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Jinbiao Zhang

Full Text Available The essential oils from four Eucalyptus species (E. spathulata, E. salubris, E. brockwayii and E. dundasii have been previously confirmed to have stronger inhibitory effects on germination and seedling growth of silverleaf nightshade (Solanum elaeagnifolium Cav.. The aqueous volatile fractions (AVFs were the water soluble volatile fractions produced together with the essential oils (water insoluble fractions during the steam distillation process. The aim of this study was to further assess the phytotoxicity of AVFs from the four Eucalyptus species and their chemical composition. The fresh leaves of the four Eucalyptus species were used for the extraction of AVFs. The AVFs were tested for their phytotoxic effects on the perennial weed, silverleaf nightshade under laboratory conditions. The chemical compositions of the AVFs were determined by gas chromatograph-mass spectrometry (GC-MS. Our results showed that the AVFs had strong inhibition on the germination and seedling growth of silverleaf nightshade. The inhibition index increased with the increasing concentrations of AVFs. The inhibitory effects of the AVFs varied between different Eucalyptus species. The AVF from E. salubris demonstrated the highest inhibitory activity on the weed tested, with complete inhibition on germination and seedling growth at a concentration of 75%. The GC-MS analysis revealed that 1,8-cineole, isopentyl isovalerate, isomenthol, pinocarvone, trans-pinocarveol, alpha-terpineol and globulol were the main compounds in the AVFs. These results indicated that all AVFs tested had differential inhibition on the germination and seedling growth of silverleaf nightshade, which could be due to the joint effects of compounds present in the AVFs as these compounds were present in different quantities and ratio between Eucalyptus species.

Methanol production from Eucalyptus wood chips. Working document I. The Florida Eucalyptus energy farm: silvicultural methods and considerations

Energy Technology Data Exchange (ETDEWEB)

Fishkind, H.H.

1982-04-01

The silvicultural matrix within which the nation's first large scale wood energy plantation will develop is described in detail. The relevant literature reviewed is identified and distilled. The plantation history, site preparation, planting, species selection, maintenance and management, harvesting, and the Eucalyptus biomass production estimates are presented.

Eucalyptus gall wasp, Leptocybe invasa Fisher & La Salle (Insecta: Hymenoptera: Eulophidae), an emerging pest of eucalyptus in Florida

Science.gov (United States)

A new emerging pest of eucalyptus, Leptocybe invasa Fisher & La Salle, was first found in Italy but mistakenly identified as Aprostocetus sp.. This was followed by another report of an infestation from Turkey in early 2000. It was first formally described in 2004 from Australia as Leptocybe invasa a...

Did Eucalyptus contribute to environment degradation? Implications from a dispute on causes of severe drought in Yunnan and Guizhou, China

OpenAIRE

WenJun Zhang

2012-01-01

Various viewpoints were proposed to explain the causes of recent years' severe drought occurred in Yunnan and Guizhou, China. In general there are two parties of viewpoints, the Eucalyptus cause and climate change cause. I think Yunnan-Guizhou drought has been mainly caused by abnormal climate change. Eucalyptus was not significant in the formation of Yunnan-Guizhou drought. However, the forestation effect of Eucalyptus in China was not good. Environment quality and biodiversity in Eucalyptus...

Consumo Foliar de Eucalyptus spp. por Acromyrmex disciger (Mayr, 1887 (Hymenoptera: Formicidae

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Wagner Calixto Morais

2011-07-01

Abstract. The productive potential of forest stands is reduced by pest occurrence among other factors. In Brazil, leaf-cutting ants are the most severe eucalypt pests. Acromyrmex disciger (Mayr is prevalent in the south east Brazil. However, scarce information about its potential damage for Eucalyptus forests is available. This work deals to quantifying the eucalypt leaf-consumption by such specie of leaf-cutting ant. Fresh leaves were taken from trees of Eucalyptus grandis W. Hill ex Maiden, Eucalyptus urophylla ST Blake, and hybrid E. urophylla x E. grandis and served to different colonies of A. disciger, during 24 hours period, over eight different times. Leaf-consumption was calculated throughout fresh weights of leaves, before and after ants foraging. Each colony of A. disciger consumed 38.8 ± 3.2 g e 22.0 ± 2.3 g of eucalypt leaves, per day.

RNA-Seq using two populations reveals genes and alleles controlling wood traits and growth in Eucalyptus nitens.

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Saravanan Thavamanikumar

Full Text Available Eucalyptus nitens is a perennial forest tree species grown mainly for kraft pulp production in many parts of the world. Kraft pulp yield (KPY is a key determinant of plantation profitability and increasing the KPY of trees grown in plantations is a major breeding objective. To speed up the breeding process, molecular markers that can predict KPY are desirable. To achieve this goal, we carried out RNA-Seq studies on trees at extremes of KPY in two different trials to identify genes and alleles whose expression correlated with KPY. KPY is positively correlated with growth measured as diameter at breast height (DBH in both trials. In total, six RNA bulks from two treatments were sequenced on an Illumina HiSeq platform. At 5% false discovery rate level, 3953 transcripts showed differential expression in the same direction in both trials; 2551 (65% were down-regulated and 1402 (35% were up-regulated in low KPY samples. The genes up-regulated in low KPY trees were largely involved in biotic and abiotic stress response reflecting the low growth among low KPY trees. Genes down-regulated in low KPY trees mainly belonged to gene categories involved in wood formation and growth. Differential allelic expression was observed in 2103 SNPs (in 1068 genes and of these 640 SNPs (30% occurred in 313 unique genes that were also differentially expressed. These SNPs may represent the cis-acting regulatory variants that influence total gene expression. In addition we also identified 196 genes which had Ka/Ks ratios greater than 1.5, suggesting that these genes are under positive selection. Candidate genes and alleles identified in this study will provide a valuable resource for future association studies aimed at identifying molecular markers for KPY and growth.

Eucalyptus microsatellites mined in silico: survey and evaluation

Indian Academy of Sciences (India)

2008-04-01

Apr 1, 2008 ... Eucalyptus microsatellites mined in silico: survey and evaluation ... cific regions of the genome of different species (Marques et ..... Received 21 June 2007, in revised form 11 September 2007; accepted 12 September 2007.

Wood density and anatomy of three Eucalyptus species: implications for hydraulic conductivity

OpenAIRE

Antonio J. Barotto; Silvia Monteoliva; Javier Gyenge; Alejandro Martínez-Meier; Karen Moreno; Natalia Tesón; María Elena Fernández

2017-01-01

Aim of the study: To characterize wood anatomical traits of three Eucalyptus species that differ in wood density and ecological requirements, and to examine the relationships between some anatomical features, wood density, and theoretical xylem hydraulic conductivity (Ks). Area of study: We analyzed 86 trees from three sites of Argentina (Entre Ríos and Buenos Aires Provinces). Methods: The sampled trees were Eucalyptus globulus, E. grandis and E. viminalis ranging from 11 to 15 years...

Effect of surfactant concentration on the spreading properties of pesticide droplets on Eucalyptus leaves

Science.gov (United States)

The area wetted by 500-µm diameter droplets of pesticide and deionised water placed at different positions on Eucalyptus urophylla × E. grandis (E.u × E.g) and Eucalyptus tereticornis (E.t) leaves was determined at an air temperature of 30 °C and a relative humidity of 60%. Dimethyl dichlorovinyl ph...

Cu,Cr and As determination in preserved woods (Eucalyptus ssp.) by X-ray fluorescence spectrometries; Determinacao de cobre, cromo e arsenio em madeira preservada (Eucalyptus sp.) pelas espectrometrias de fluorescencia de raios X

Energy Technology Data Exchange (ETDEWEB)

Pereira Junior, Sergio Matias

2014-07-01

Brazil produces around 2.2 millions of cubic meters of treated wood to meet the annual demand of railway, electric, rural and construction sectors. The most used wood species are eucalyptus (Eucalyptus ssp.) and pine (Pinus ssp.).The treated woods used for poles, sleepers, fence posts and plywoods should be according to Brazilian norms requirements. The most usual wood preservative products used in Brazil are CCA (chromated copper arsenate) and CCB (copper chromium and boron salt). The analytical methods, such as flame atomic absorption spectrometry (FAAS), plasma inductively coupled optical emission spectrometry (ICPOES) and X-ray fluorescence spectrometry (XRFS) have been used for the analytical control of those treatment processes. In this work, the eucalyptus trees (Eucalyptus ssp) samples was obtained from Minas Gerais State, Brazil, cut plantation areas. Under pressure, eucalyptus wood samples were submitted to different concentration of CCA solution reaching 3.9, 6.7, 9.1, 12.4 and 14.0 kg of CCA by m-³ sapwood retentions. Samples in cylinders and sawdust forms were obtained from treated wood samples. Copper, chromium and arsenic determination was performed using the energy dispersive X-ray fluorescence spectrometry (EDXRFS), portable X-ray fluorescence spectrometry (PXRFS), flame atomic absorption spectrometry (FAAS) and instrumental neutron activation analysis. In this work, the method of analysis, sensitivity, precision and accuracy performances of the related techniques were outlined. (author)

Tensão de crescimento em árvores vivas de clones de Eucalyptus spp. e de Eucalyptus dunnii Maiden e propriedades da sua madeira

OpenAIRE

Trugilho, Paulo Fernando

2013-01-01

Este estudo teve por objetivo avaliar a funcionalidade do método CIRAD-Forêt para determinação das deformações residuais longitudinais (DRL) e determinar o nível de variação da DRL em árvores vivas de clones de Eucalyptus spp. e de árvores matrizes de Eucalyptus dunnii Maiden. Objetivou, ainda, determinar a variação da DRL inter e intra genótipos, avaliar a relação existente entre a DRL e algumas características da madeira, estimar a tensão de crescimento longitudinal usado à relação existent...

Allelopathic effects of invasive Eucalyptus camaldulensis on ...

African Journals Online (AJOL)

Eucalyptus camaldulensis Dehnh. (red river gum; Myrtaceae) is an invasive tree in riparian habitats of the Western Cape, South Africa, where it replaces indigenous vegetation and affects ecosystem functioning. These invasions lead to changes in river geomorphology and reduction in stream flow. The mechanisms that ...

Isotopic abundance of 13 C and contribution of eucalyptus biomass to soil organic matter conversion

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Fabiane Figueiredo Severo

Full Text Available ABSTRACT: It has become possible to evaluate the conversion of soil organic matter (SOM in pastures and arboreal crops due to the difference between the photosynthetic cycles of Eucalyptus (C3 and most grasses (C4. The auto analyzer method coupled to the IRMS (Isotope Ratio Mass Spectrometer in the present study evaluated the 13C content in soil profiles of Eucalyptus plantations of different ages (2, 10 and 21 years, in natural regeneration areas and natural grazing fields, and estimated the SOM conversion of each crop type of. The initial management of all sampled areas was natural pasture. The following profile layers were evaluated: 0-5, 5-10, 10-20, 20-30, 30-40, 40-50, 50-70 and 70-90cm, and the contribution of Eucalyptus biomass over the years of farming was estimated in the SOM conversion process. After 2 years of planting Eucalyptus, the beginning of pasture carbon conversion process occurred in the surface layer (0-5cm. Ten years after planting, the process of converting organic matter by arboreal crops reached the layers up to 20cm. After 21 years of planting and in natural regeneration areas, the entire profile has already been changed by planting Eucalyptus and native tree species.

Characterization of diazotrophic bacteria non-symbiotic associated with eucalyptus (eucalyptus sp.) in Codazzi, Cesar (Colombia)

International Nuclear Information System (INIS)

Obando Castellanos, Dolly Melissa; Burgos Zabala, Ludy Beatriz; Rivera Botia, Diego Mauricio; Rubiano Garrido, Maria Fernanda; Divan Baldini, Vera Lucia; Bonilla Buitrago, Ruth Rebeca

2010-01-01

The effect of climatic seasons (rainy and dry) and the stratum sample (rhizospheric soil, roots and leaves) the population of the genera Azotobacter, Beijerinckia, Derxia, Azospirillum, Herbaspirillum, Gluconacetobacter and Burkholderia in soil rhizosphere, roots and leaves of eucalyptus (eucalyptus sp.). It also assesses their ability to produce indoles compounds as plant growth promoters and their acetylene reduction activity as an indicator of biological fixation of nitrogen. The results showed no statistically significant differences in the Duncan test (p ≤ 0.05) in the population with respect to the climate epoch, suggesting that these bacteria are able to tolerate stress conditions by different physiological mechanisms. With respect to the stratum sample isolates attempts of Herbaspirillum sp. and Azospirillum sp. significant differences in rhizospheric soil and roots. we obtained 44 isolates of which were grouped by phenotypic characterization as 14 suspected of Beijerinckia sp., 12 Azotobacter sp., 8 Derxia sp., 4 Herbaspirillum sp., 5 Azospirillum sp., 1 Gluconacetobacter sp. and 1 Burkholderia sp. due to their high potential were selected isolates C27, C26 and C25. These four strains present the best values of efficiency in vitro, exceeding production values of the reference strains used (A. chroococcum (AC1) and a. brasilense (SP7)).

Determination of chemical elements in Eucalyptus grandis, manured with Ballad's, by neutrons activation analysis

International Nuclear Information System (INIS)

Mateus, Natalina de Fatima; Madi Filho, Tufic

2007-01-01

The biosolid is a mud resulting from the biological treatment of wasted liquids. It is considered as a profitable alternative and important to minimize the environmental impact generated by the sewage thrown in to sanitary lands, in forest cultures like the Eucalyptus grandis. The objective of this work was to detect which chemical elements are present in Eucalyptus grandis samples, fertilized with different quantities of biosolid. The eucalyptuses of Estacao Experimental de Ciencias Florestais of Itatinga were planted in March of 1998 and collected with five years old. The used biosolid was produced by Station of Treatment of Sewer of Barueri - SP, classified as kind B. For the determination of the presence and quantity of chemical elements in the eucalyptus samples, an analysis technique by neutronic activation (NAA) was used followed by gamma rays spectroscopy. The samples were irradiated in the Nuclear Reactor IEA-R1 of IPEN-SP, followed by the measure of induced gamma rays activity, using a Detector HPGe. The presence, mainly of Br, Mn, Na and K, was detected in all analyzed samples. (author)

Wood density and anatomy of three Eucalyptus species: implications for hydraulic conductivity

OpenAIRE

Barotto, Antonio J.; Monteoliva, Silvia; Gyenge, Javier; Martínez-Meier, Alejandro; Moreno, Karen; Tesón, Natalia; Fernández, María Elena

2017-01-01

Aim of the study: To characterize wood anatomical traits of three Eucalyptus species that differ in wood density and ecological requirements, and to examine the relationships between some anatomical features, wood density, and theoretical xylem hydraulic conductivity (Ks).Area of study: We analyzed 86 trees from three sites of Argentina (Entre Ríos and Buenos Aires Provinces).Methods: The sampled trees were Eucalyptus globulus, E. grandis and E. viminalis ranging from 11 to 15 years old. One ...

Biological, medicinal and toxicological significance of Eucalyptus leaf essential oil: a review.

Science.gov (United States)

Dhakad, Ashok K; Pandey, Vijay V; Beg, Sobia; Rawat, Janhvi M; Singh, Avtar

2018-02-01

The genus Eucalyptus L'Heritier comprises about 900 species, of which more than 300 species contain volatile essential oil in their leaves. About 20 species, within these, have a high content of 1,8-cineole (more than 70%), commercially used for the production of essential oils in the pharmaceutical and cosmetic industries. However, Eucalyptus is extensively planted for pulp, plywood and solid wood production, but its leaf aromatic oil has astounding widespread biological activities, including antimicrobial, antiseptic, antioxidant, chemotherapeutic, respiratory and gastrointestinal disorder treatment, wound healing, and insecticidal/insect repellent, herbicidal, acaricidal, nematicidal, and perfumes, soap making and grease remover. In the present review, we have made an attempt to congregate the biological ingredients of leaf essential oil, leaf oil as a natural medicine, and pharmacological and toxicological values of the leaf oil of different Eucalyptus species worldwide. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Expansion of eucalyptus culture in the municipalities of Minas Gerais and territorial management

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João Batista Rezende

2013-03-01

Full Text Available This article deals with the development of monoculture index (MI of eucalyptus as a key element for the management of the territory, from the perspective of sustainable development. We analyzed the "geography" of the eucalyptus plantation in Minas Gerais, to support the planning, organization, control and use of territory. The Monoculture index proposed, which is an important tool for land management, was developed and validate by its application to municipalities of Minas Gerais state. It was shown that the culture of Eucalyptus represents a low rate of monoculture in the state of Minas Gerais and that the geography of this culture is compatible with sustainable territorial expansion. Therefore, these results contribute to the definition of public land management in Minas Gerais and the methodology used can be applied to other states.

ANTI-INFLAMMATORY ACTIVITY OF EUCALYPTUS SPP. AND PISTASCIA LENTISCUS LEAF EXTRACTS.

Science.gov (United States)

Qabaha, Khaled; Ras, Sari Abu; Abbadi, Jehad; Al-Rimawi, Fuad

2016-01-01

Eucalyptus spp. and Pistascia lentiscus are among the Palestinian trees that are traditionally used in folkloric medicine in treating many diseases; leaves of which are thought to have anti-inflammatory, antibacterial and antioxidant effects. The goal of this study is to evaluate the in vitro inhibitory effect of Eucalyptus spp . and Pistascia lentiscus extracts on Lipopolysacaride (LPS)-induced Interlukin-6 (Il-6) and Tumor Necrosis Factor-α (TNF-α) by polymorphonuclear Cells (PMNCs). Polymorphonuclear cells were isolated from the whole blood using Histopaque (Ficol-1077) method and then cultured in an enriched Roswell Park Memorial Institute (RBMI) medium. Supernatants' Interlukin-6 (IL-6) and Tumor Necrosis Factor (TNF-α) levels were determined 24 hour after LPS stimulation. HPLC was employed to determine the concentration of phenolic compounds in the extracts. The concentrations of TNF-α and IL-6 were compared using paired-samples t test. Eucalyptus spp . and Pistascia lentiscus leaves extracts have shown significant reduction in the levels of both Il-6 and TNF-α Gallic acid; a strong anti-inflammatory agent was found to be the major phenolic compound in both leaf extracts. However, other anti-inflammatory phenolic compounds were detected in Pitascia lentiscus extract including syringic acid and p-coumaric acid, while chlorogenic acid was detected in Eucalyptus spp . leaf extract. Reduction in the levels of Il-6 and TNF-α upon the effect of both Eucalyptus spp . and Pistascia lentiscus extract is an indication of their anti-inflammatory effects. Our results may also indicate that the observed anti-inflammatory effect of the above extracts may be due to the presence of gallic acid and other phenolic compounds. List of Abbreviations and Nomenclature: LPS: Lipopolysacaride, Il-6: Interlukin-6, TNF-α: Tumor Necrosis Factor-α, PMNCs: Polymorphonuclear Cells, HPLC: High Performance Liquid Chromatography, ELISA: Enzyme Linked Immune Sorbent Assay, EDTA

Development during indirect organogenesis in Eucalyptus grandis x ...

African Journals Online (AJOL)

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isolation or from a region of the stem immediately above the callus. Roots developed ... In this study, the same clone (Eucalyptus grandis urophylla hybrid) was used and .... strands and they linked these with shoot formation, whilst. Arvore et al.

Managing a Coastal Bluegum (Eucalyptus globules) forest

Science.gov (United States)

Ralph S. Osterling

1983-01-01

Eucalyptus was thought to be a replacement to oak and other hardwoods for many products. Thousands of acres have been planted and now are in need of management. Management techniques are discussed in context with a coastal stand of approximately 300 acres of mixed aged bluegum. Potential markets are explored.

Parallel Sequencing of Expressed Sequence Tags from Two Complementary DNA Libraries for High and Low Phosphorus Adaptation in Common Beans

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Matthew W. Blair

2011-11-01

Full Text Available Expressed sequence tags (ESTs have proven useful for gene discovery in many crops. In this work, our objective was to construct complementary DNA (cDNA libraries from root tissues of common beans ( L. grown under low and high P hydroponic conditions and to conduct EST sequencing and comparative analyses of the libraries. Expressed sequence tag analysis of 3648 clones identified 2372 unigenes, of which 1591 were annotated as known genes while a total of 465 unigenes were not associated with any known gene. Unigenes with hits were categorized according to biological processes, molecular function, and cellular compartmentalization. Given the young tissue used to make the root libraries, genes for catalytic activity and binding were highly expressed. Comparisons with previous root EST sequencing and between the two libraries made here resulted in a set of genes to study further for differential gene expression and adaptation to low P, such as a 14 kDa praline-rich protein, a metallopeptidase, tonoplast intrinsic protein, adenosine triphosphate (ATP citrate synthase, and cell proliferation genes expressed in the low P treated plants. Given that common beans are often grown on acid soils of the tropics and subtropics that are usually low in P these genes and the two parallel libraries will be useful for selection for better uptake of this essential macronutrient. The importance of EST generation for common bean root tissues under low P and other abiotic soil stresses is also discussed.

Can the Understory Affect the Hymenoptera Parasitoids in a Eucalyptus Plantation?

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Onice Teresinha Dall'Oglio

Full Text Available The understory in forest plantations can increase richness and diversity of natural enemies due to greater plant species richness. The objective of this study was to test the hypothesis that the presence of the understory and climatic season in the region (wet or dry can increase the richness and abundance of Hymenoptera parasitoids in Eucalyptus plantations, in the municipality of Belo Oriente, Minas Gerais State, Brazil. In each eucalyptus cultivation (five areas of cultivation ten Malaise traps were installed, five with the understory and five without it. A total of 9,639 individuals from 30 families of the Hymenoptera parasitoids were collected, with Mymaridae, Scelionidae, Encyrtidae and Braconidae being the most collected ones with 4,934, 1,212, 619 and 612 individuals, respectively. The eucalyptus stands with and without the understory showed percentage of individuals 45.65% and 54.35% collected, respectively. The understory did not represent a positive effect on the overall abundance of the individuals Hymenoptera in the E. grandis stands, but rather exerted a positive effect on the specific families of the parasitoids of this order.

MODELING THE GROWTH OF EUCALYPTUS PLANTS BASED ON THE THERMAL SUM

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Aline Santana de Oliveira

Full Text Available ABSTRACT Among the environmental variables that affect the growth and development of plants, the air temperature is of great importance. In this context, the objectives of this work were to model the growth of eucalyptus seedlings in terms of accumulated degree-days during the production process and model validation. The study was conducted in the forest research nursery of the Department of Forestry, located in Viçosa (MG, during the periods of 08/02/2011 to 28/04/2011 and 03/08/2012 to 01/11/2012, making it possible to contemplate seasonal variations in the production cycle. The monitored variables were shoot height, stem diameter, leaf area, root length and fresh and dry biomass. Results showed that it took 1065 degree-days for the production of seedlings and sigmoidal models obtained showed high correlation and Willmott coefficients, indicating good performance for estimating the growth and development of eucalyptus seedlings. This tool has great potential for planning and monitoring the production of eucalyptus seedlings in nurseries.

Can the Understory Affect the Hymenoptera Parasitoids in a Eucalyptus Plantation?

Science.gov (United States)

Dall’Oglio, Onice Teresinha; Ribeiro, Rafael Coelho; Ramalho, Francisco de Souza; Fernandes, Flávio Lemes; Wilcken, Carlos Frederico; de Assis Júnior, Sebastião Lourenço; Rueda, Rosa Angélica Plata; Serrão, José Eduardo; Zanuncio, José Cola

2016-01-01

The understory in forest plantations can increase richness and diversity of natural enemies due to greater plant species richness. The objective of this study was to test the hypothesis that the presence of the understory and climatic season in the region (wet or dry) can increase the richness and abundance of Hymenoptera parasitoids in Eucalyptus plantations, in the municipality of Belo Oriente, Minas Gerais State, Brazil. In each eucalyptus cultivation (five areas of cultivation) ten Malaise traps were installed, five with the understory and five without it. A total of 9,639 individuals from 30 families of the Hymenoptera parasitoids were collected, with Mymaridae, Scelionidae, Encyrtidae and Braconidae being the most collected ones with 4,934, 1,212, 619 and 612 individuals, respectively. The eucalyptus stands with and without the understory showed percentage of individuals 45.65% and 54.35% collected, respectively. The understory did not represent a positive effect on the overall abundance of the individuals Hymenoptera in the E. grandis stands, but rather exerted a positive effect on the specific families of the parasitoids of this order. PMID:26954578

DNA sequence and prokaryotic expression analysis of vitellogenin ...

African Journals Online (AJOL)

In this study, the DNA sequence of vitellogenin from Antheraea pernyi (Ap-Vg) was identified and its functional domain (30-740 aa, Ap-Vg-1) was expressed in Escherichia coli BL21 (DE3) cells. The recombinant Ap-Vg-1 proteins were purified and used for antibody preparation. The results showed that the intact DNA ...

Estabelecimento, multiplicação e alongamento in vitro de Eucalyptus benthamii Maiden & Cambage x Eucalyptus dunnii Maiden Establishment, multiplication and elongation in vitro of Eucalyptus benthamii Maiden & Cambage x Eucalyptus dunnii Maiden

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Gilvano Ebling Brondani

2009-02-01

Full Text Available Neste trabalho foram testadas diferentes concentrações de cloro ativo (NaOCl na assepsia de explantes para o estabelecimento in vitro, bem como benzilaminopurina (BAP e ácido naftalenoacético (ANA para a multiplicação e alongamento de Eucalyptus benthamii x Eucalyptus dunnii. As minicepas fornecedoras de propágulos para introdução in vitro foram conduzidas em minijardim clonal sob sistema semi-hidropônico. Segmentos nodais dos clones H12, H19 e H20 foram desinfestados com 0,5; 1,0; 1,5; e 2,0% (v/v de cloro ativo durante 10 min e inoculados em meio de cultura MS. Na obtenção de brotações múltiplas, utilizou-se o meio de cultura ½MS suplementado com 0; 0,25; 0,50; 0,75; e 1,0 mg L-1 de BAP. Na fase de alongamento, utilizou-se o meio de cultura ½MS com 0; 0,25; 0,50; 0,75; e 1,0 mg L-1 de ANA. Não houve interação entre os fatores estudados, obtendo-se 45%, 46% e 66% de estabelecimento do clone H12, H19 e H20, respectivamente. A concentração de BAP que resultou na maior proliferação de gemas axilares para o clone H12 aos 60 dias foi estimada na faixa de 0,25 e 0,30 mg L-1. Aos 60 dias, a faixa entre 0,25 e 0,75 mg L-1 de ANA promoveu o maior número de brotações alongadas do clone H12.This work aimed to evaluate different concentrations of active chlorine (NaOCl in explant asepsis for the establishment in vitro as well as of benzylaminopurine (BAP and naphthalene acetic acid (NAA in the multiplication and elongation of Eucalyptus benthamii x Eucalyptus dunnii. Ministumps, which supply shoots for introduction in vitro, were cultivated in a clonal mini garden under semi-hydroponic system. Nodal segments of clones H12, H19 and H20 were disinfested with 0.5, 1.0, 1.5 and 2.0% (v/v of active chlorine during 10 minutes and inoculated in MS medium. In the multiplication phase, culture ½MS medium supplemented with 0, 0.25, 0.50, 0.75 and 1.0 mg L-1 of BAP was used. In the elongation phase, ½MS medium supplemented with 0, 0.25, 0

Cu,Cr and As determination in preserved woods (Eucalyptus ssp.) by X-ray fluorescence spectrometries

International Nuclear Information System (INIS)

Pereira Junior, Sergio Matias

2014-01-01

Brazil produces around 2.2 millions of cubic meters of treated wood to meet the annual demand of railway, electric, rural and construction sectors. The most used wood species are eucalyptus (Eucalyptus ssp.) and pine (Pinus ssp.).The treated woods used for poles, sleepers, fence posts and plywoods should be according to Brazilian norms requirements. The most usual wood preservative products used in Brazil are CCA (chromated copper arsenate) and CCB (copper chromium and boron salt). The analytical methods, such as flame atomic absorption spectrometry (FAAS), plasma inductively coupled optical emission spectrometry (ICPOES) and X-ray fluorescence spectrometry (XRFS) have been used for the analytical control of those treatment processes. In this work, the eucalyptus trees (Eucalyptus ssp) samples was obtained from Minas Gerais State, Brazil, cut plantation areas. Under pressure, eucalyptus wood samples were submitted to different concentration of CCA solution reaching 3.9, 6.7, 9.1, 12.4 and 14.0 kg of CCA by m-³ sapwood retentions. Samples in cylinders and sawdust forms were obtained from treated wood samples. Copper, chromium and arsenic determination was performed using the energy dispersive X-ray fluorescence spectrometry (EDXRFS), portable X-ray fluorescence spectrometry (PXRFS), flame atomic absorption spectrometry (FAAS) and instrumental neutron activation analysis. In this work, the method of analysis, sensitivity, precision and accuracy performances of the related techniques were outlined. (author)

Phytotoxic effects of aqueous leaf extracts of two eucalyptus SPP. against parthenium hysterophorus L

International Nuclear Information System (INIS)

Javaid, A.; Shah, M.B.M.

2007-01-01

The present study was carried out to investigate the phytotoxic effect of aqueous leaf extracts of two eucalyptus species viz. E citriodora Hook and E. camaldulensis Dehnh. Against the germination and seeding growth of alien aggressive weed parthenium hysterophorus L. The experiment was conducted in department of Mycology and plant Pathology in 2006. Aqueous leaf extracts of 2, 4, 6, 8 and 10% (w/v) of the two aforementioned Eucalyptus species were employed in the present study. Extracts of 2-8% concentration of both the Eucalyptus species significantly suppressed germination of the target weed species. A 10% extract of both the species completely arrested the germination. Aqueous extracts also reduced the root and shoot length of parthenium. Effect of extracts on seedling biomass was insignificant. (author)

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

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Arias Covadonga

2007-06-01

Full Text Available Abstract Background The ciliate protozoan Ichthyophthirius multifiliis (Ich is an important parasite of freshwater fish that causes 'white spot disease' leading to significant losses. A genomic resource for large-scale studies of this parasite has been lacking. To study gene expression involved in Ich pathogenesis and virulence, our goal was to generate expressed sequence tags (ESTs for the development of a powerful microarray platform for the analysis of global gene expression in this species. Here, we initiated a project to sequence and analyze over 10,000 ESTs. Results We sequenced 10,368 EST clones using a normalized cDNA library made from pooled samples of the trophont, tomont, and theront life-cycle stages, and generated 9,769 sequences (94.2% success rate. Post-sequencing processing led to 8,432 high quality sequences. Clustering analysis of these ESTs allowed identification of 4,706 unique sequences containing 976 contigs and 3,730 singletons. These unique sequences represent over two million base pairs (~10% of Plasmodium falciparum genome, a phylogenetically related protozoan. BLASTX searches produced 2,518 significant (E-value -5 hits and further Gene Ontology (GO analysis annotated 1,008 of these genes. The ESTs were analyzed comparatively against the genomes of the related protozoa Tetrahymena thermophila and P. falciparum, allowing putative identification of additional genes. All the EST sequences were deposited by dbEST in GenBank (GenBank: EG957858–EG966289. Gene discovery and annotations are presented and discussed. Conclusion This set of ESTs represents a significant proportion of the Ich transcriptome, and provides a material basis for the development of microarrays useful for gene expression studies concerning Ich development, pathogenesis, and virulence.

Ansel Adams's Eucalyptus Tree, Fort Ross: Nature, Photography, and the Search for California

OpenAIRE

Adam Arenson

2005-01-01

This article considers the image of California evoked in the unusual Ansel Adams photograph Eucalyptus Tree, Fort Ross, California (1969), a Polaroid Land image of the garrison fence and an aged eucalyptus tree. Considering the participation of Russian occupation, Australian cross-pollination, Carleton Watkins's early photographs of redwoods, automotive and tourist images in the creation of this distinctive California place, the article argues that to understand Ansel Adams's work, we must no...

Wood CO2 efflux and foliar respiration for Eucalyptus in Hawaii and Brazil

Science.gov (United States)

Michael G. Ryan; Molly A. Cavaleri; Auro C. Almeida; Ricardo Penchel; Randy S. Senock; Jose Luiz Stape

2009-01-01

We measured CO2 efflux from wood for Eucalyptus in Hawaii for 7 years and compared these measurements with those on three- and four-and-a-halfyear- old Eucalyptus in Brazil. In Hawaii, CO2 efflux from wood per unit biomass declined ~10x from age two to age five, twice as much as the decline in tree growth. The CO2 efflux from wood in Brazil was 8-10· lower than that...

Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field.

Science.gov (United States)

Bedon, Frank; Villar, Emilie; Vincent, Delphine; Dupuy, Jean-William; Lomenech, Anne-Marie; Mabialangoma, André; Chaumeil, Philippe; Barré, Aurélien; Plomion, Christophe; Gion, Jean-Marc

2012-04-01

Water deficit affects tree growth and limits wood production. In an attempt to identify the molecular triggers of adaptation mechanisms to water deficit in Eucalyptus, we investigated protein expression patterns of two ecophysiologically contrasted Eucalyptus genotypes. They were grown in the field in either natural conditions or irrigated for 7 weeks during the dry season in the Republic of Congo. At the phenotypic level, genotype (G), treatment (T) and/or G × T interaction effects were observed for above- and below-ground biomass-related traits. At the molecular level, changes in protein abundance were recorded in leaves (acidic pH 4-7, and basic pH 7-11, proteomes) and stems (acidic proteome) using two-dimensional gel electrophoresis (2-DE). One third of the detected protein spots displayed significant G, T and/or G × T effects, and 158 of them were identified by tandem mass spectrometry (LC-MS/MS) analysis. Thus, several proteins whose molecular plasticity was genetically controlled (i.e. G × T effect) were revealed, highlighting adaptive mechanisms to water deficit specific to each genotype, namely cell wall modification, cell detoxification and osmoregulation. Transcript abundances corresponding to G × T proteins were also investigated by quantitative RT-PCR. These proteins represent relevant targets to improve drought resistance in this ecologically and economically important forest tree genus. © 2011 Blackwell Publishing Ltd.

Environmental aspects of eucalyptus based ethanol production and use

International Nuclear Information System (INIS)

González-García, Sara; Moreira, Ma. Teresa; Feijoo, Gumersindo

2012-01-01

A renewable biofuel economy is projected as a pathway to decrease dependence on fossil fuels as well as to reduce greenhouse gases (GHG) emissions. Ethanol produced on large-scale from lignocellulosic materials is considered the automotive fuel with the highest potential. In this paper, a life cycle assessment (LCA) study was developed to evaluate the environmental implications of the production of ethanol from a fast-growing short rotation crop (SRC): eucalyptus as well as its use in a flexi-fuel vehicle (FFV). The aim of the analysis was to assess the environmental performance of three ethanol based formulations: E10, E85 and E100, in comparison with conventional gasoline. The standard framework of LCA from International Standards Organization was followed and the system boundaries included the cultivation of the eucalyptus biomass, the processing to ethanol conversion, the blending with gasoline (when required) and the final use of fuels. The environmental results show reductions in all impact categories under assessment when shifting to ethanol based fuels, excluding photochemical oxidant formation, eutrophication as well as terrestrial and marine ecotoxicity which were considerably influenced by upstream activities related to ethanol manufacture. The LCA study remarked those stages where the researchers and technicians need to work to improve the environmental performance. Special attention must be paid on ethanol production related activities, such as on-site energy generation and distillation, as well as forest activities oriented to the biomass production. The use of forest machinery with higher efficiency levels, reduction of fertilizers dose and the control of diffuse emissions from the conversion plant would improve the environmental profile. -- Highlights: ► The identification of the environmental implications of the production and use of eucalyptus based ethanol was carried out. ► Eucalyptus is a Spanish common and abundant fast-growing short

Expressed sequence tags of differential genes in the radioresistant mice and their parental mice

International Nuclear Information System (INIS)

Wang Qin; Yue Jingyin; Li Jin; Song Li; Liu Qiang; Mu Chuanjie; Wu Hongying

2009-01-01

Objective: To explore radioresistance correlative genes in IRM-2 inbred mouse. Methods: The total RNA was extracted from spleen cells of IRM-2 and their parent 615 and ICR/JCL mouse. The mRNA differential display technique was used to analyze gene expression differences. Each differential bands were amplified by PCR, cloned and sequenced. Results: There were 75 differential expression bands appearing in IRM-2 mouse but not in 615 and ICR/JCL mouse. Fifty-two pieces of cDNA sequences were got by sequencing. Twenty-one expressed sequence tags (EST) that were not the same as known mice genes were found and registered by comparing with GenBank database. Conclusion: Twenty-one EST denote that radioresistance correlative genes may be in IRM-2 mouse, which have laid a foundation for isolating and identifying radioresistance correlative genes in further study. (authors)

Supplementary data: Eucalyptus microsatellites mined in silico ...

Indian Academy of Sciences (India)

Supplementary data: Eucalyptus microsatellites mined in silico: survey and evaluation. R. Yasodha, R. Sumathi, P. Chezhian, S. Kavitha and M. Ghosh. J. Genet. 87, XX-XX. Tm. CT. 2222. NA. 60 125. 192. Table 1. List of EST-SSR primers developed for E. globulus. No. of. Tm Product. Acc. no. SSR repeats. Forward primer.

Productivity gains by fertilisation in Eucalyptus urophylla clonal ...

African Journals Online (AJOL)

Productivity gains by fertilisation in Eucalyptus urophylla clonal plantations across gradients in site and stand conditions. ... The control plot may typically be a permanent plot of an inventory network, providing representative information for a company's decisionmaking. The paired twin-plot receives intensive management ...

The structure and properties of eucalyptus fiber/phenolic foam composites under N-β(aminoethyl-γ-aminopropyl trimethoxy silane pretreatments

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Ma Yufeng

2017-12-01

Full Text Available Eucalyptus fibers were modified with N-β(aminoethyl-γ-aminopropyl trimethoxy silane to research the fiber surface’s changes and the influence of the treatment on the mechanical properties, flame resistance, thermal conductivity and microstructure of eucalyptus fiber composite phenolic foams (EFCPFs. The results showed that the partial of hemicelluloses, waxes, lignin and impurities from the fiber surface were dissolved and removed. Compared with untreated EFCPFs, the mechanical properties of treated EFCPFs were increased dramatically; The size of cells was smaller and the distribution was more uniform; The thermal conductivities were basically reduced; Especially the ratio of mass loss decreased obviously. However limited oxygen indexs (LOIs reduced. And the mechanical properties and LOIs of EFCPFs were basically decreased with the increase of eucalyptus fibers. By comprehensive analysis, the results showed that the interfacial compatibility has been significantly improved between eucalyptus fibers and phenolic resin. And the suitable dosage of eucalyptus fibers was about 5%.

LEVANTAMENTO DA ENTOMOFAUNA EM PLANTIOS DE Eucalyptus spp. POR MEIO DE ARMADILHA LUMINOSA EM SÃO FRANCISCO DE ASSIS - RS

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Juliana Garlet

2016-01-01

Full Text Available The cultivation of eucalyptus has become an important economic activity in Brazil. However, with the increase of the plantation areas, some entomological problems tend to increase in the same proportion. The constant monitoring of the insects associated with homogeneous planting systems is very important in order to seek the development of programs for integrated pest management. Thus, the purpose of this study was to perform a survey on the insect populations associated with Eucalyptus spp., in São Francisco de Assis, RS. The collects were carried out by light traps from July 2008 to August 2009 in three-year-old stands with the species: Eucalyptus dunni, Eucalyptus grandis and Eucalyptus grandis x Eucalyptus urophylla . The insects collected were analyzed using the faunistic indices, frequency, abundance, diversity, and constancy. The correlation between the pest species identified and the meteorological variables for the period were also performed. We collected 3623 individuals belonging to eight orders (Blattodea, Coleoptera, Dermaptera, Hemiptera, Hymenoptera, Lepidoptera, Mantodea and Odonata. Three species and three genus of lepidoptera defoliators considered of economic importance were identified: Automeris illustris, Eupseudosoma sp., Sabulodes sp., Sarsina sp., Thyrinteina arnobia and Agrotis ipsilon as well as the borer Phoracantha semipunctata . Our results show that there are important pest species of Eucalyptus already established in the region therefore some constant monitoring is required so that these species do not cause damage to plantations.

Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus

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Tchitchek Nicolas

2012-06-01

Full Text Available Abstract Background African Green Monkeys (AGM are amongst the most frequently used nonhuman primate models in clinical and biomedical research, nevertheless only few genomic resources exist for this species. Such information would be essential for the development of dedicated new generation technologies in fundamental and pre-clinical research using this model, and would deliver new insights into primate evolution. Results We have exhaustively sequenced an Expression Sequence Tag (EST library made from a pool of Peripheral Blood Mononuclear Cells from sixteen Chlorocebus sabaeus monkeys. Twelve of them were infected with the Simian Immunodeficiency Virus. The mononuclear cells were or not stimulated in vitro with Concanavalin A, with lipopolysacharrides, or through mixed lymphocyte reaction in order to generate a representative and broad library of expressed sequences in immune cells. We report here 37,787 sequences, which were assembled into 14,410 contigs representing an estimated 12% of the C. sabaeus transcriptome. Using data from primate genome databases, 9,029 assembled sequences from C. sabaeus could be annotated. Sequences have been systematically aligned with ten cDNA references of primate species including Homo sapiens, Pan troglodytes, and Macaca mulatta to identify ortholog transcripts. For 506 transcripts, sequences were quasi-complete. In addition, 6,576 transcript fragments are potentially specific to the C. sabaeus or corresponding to not yet described primate genes. Conclusions The EST library we provide here will prove useful in gene annotation efforts for future sequencing of the African Green Monkey genomes. Furthermore, this library, which particularly well represents immunological and hematological gene expression, will be an important resource for the comparative analysis of gene expression in clinically relevant nonhuman primate and human research.

Uso de antraquinona en cocción kraft de Eucalyptus globulus y Eucalyptus nitens

OpenAIRE

Moreira, Jorge Felipe Quintana

2011-01-01

En la presente disertación se verificó de manera experimental el efecto de la adición de Antraquinona al proceso de cocción batch convencional para una mezcla industrial de Eucalyptus globulus E. nitens.; en lo que respecta a su capacidad de aumentar la velocidad de la reacción de deslignificación y proporcionar estabilidad a las hemicelulosas y celulosas de la fibra. Lo anterior se logró con experiencias de laboratorio fijando las condiciones de cocción de acuerdo a la operación de los dig...

Determination of pectin content of eucalyptus wood

NARCIS (Netherlands)

Coetzee, B.; Schols, H.A.; Wolfaardt, F.

2011-01-01

Very little is known about the occurrence of pectin in wood and it is speculated that between 10 mg g-1 and 40 mg g-1 of wood consists of pectin. The present study aimed to quantify pectin in eucalyptus wood and to determine the influence of tree species, yield potential of the site, tree age class

Using chlorophyll fluorescence to determine stress in Eucalyptus ...

African Journals Online (AJOL)

Using chlorophyll fluorescence to determine stress in Eucalyptus grandis seedlings: scientific paper. ... Southern Forests: a Journal of Forest Science ... factors affect the functioning of the photosynthetic system, the status of the photosynthetic apparatus is a good indicator of the plant in terms of stress and stress adaptation.

Stomatal characteristics of Eucalyptus grandis clonal hybrids in ...

African Journals Online (AJOL)

This study describes the stomatal response occurring during water stress and subsequent recovery of three Eucalyptus grandis clonal hybrids. The aim was to investigate the degree to which stomatal conductance (gs) and stomatal density differ between the clonal hybrids across seasons and in response to water stress.

Pyrolysis behaviors and kinetic studies on Eucalyptus residues using thermogravimetric analysis

International Nuclear Information System (INIS)

Chen, Zhihua; Zhu, Quanjie; Wang, Xun; Xiao, Bo; Liu, Shiming

2015-01-01

Highlights: • The first study on pyrolysis characteristics and kinetic of Eucalyptus residues. • Pyrolysis process can be divided into three stages using differential DTG method. • A new modified discrete DAEM showed better than Gaussian DAEM for kinetic studies. • Variations of activation energy reveal the mechanism change during pyrolysis process. - Abstract: The pyrolysis behaviors and kinetics of Eucalyptus leaves (EL), Eucalyptus bark (EB) and Eucalyptus sawdust (ESD) were investigated by using thermogravimetric analysis (TGA) technique. Three stages for EL, EB and ESD pyrolysis have been divided using differential derivative thermogravimetric (DDTG) method and the second stage is the main pyrolysis process with approximately 86.93% (EL), 88.96% (EB) and 97.84% (ESD) weight loss percentages. Kinetic parameters of Gaussian distributed activation energy model (DAEM) for EL, EB and ESD pyrolysis are: distributed centers (E_0) of 141.15 kJ/mol (EL), 149.21 kJ/mol (EB), 175.79 kJ/mol (ESD), standard deviations (σ) of 18.35 kJ/mol (EL), 18.37 kJ/mol (EB), 14.41 kJ/mol (ESD) and pre-exponential factors (A) of 1.15E+10 s"−"1 (EL), 4.34E+10 s"−"1 (EB), 7.44E+12 s"−"1 (ESD). A new modified discrete DAEM was performed and showed excellent fits to experimental data than Gaussian DAEM. According to the modified discrete DAEM, the activation energies are in ranges of 122.67–308.64 kJ/mol, 118.72–410.80 kJ/mol and 108.39–192.93 kJ/mol for EL, EB and ESD pyrolysis, respectively. The pre-exponential factors of discrete DAEM have wide ranges of 4.84E+13–6.12E+22 s"−"1 (EL), 1.91E+12–4.51E+25 s"−"1 (EB) and 63.43–4.36E+11 s"−"1 (ESD). The variation of activation energy versus conversion reveals the mechanism change during pyrolysis process. The kinetic data would be of immense benefit to model, design and develop suitable thermo-chemical systems for the application of Eucalyptus residues.

THE Eucalyptus sp. AGE PLANTATIONS INFLUENCING THE CARBON STOCKS

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Charlote Wink

2013-06-01

Full Text Available http://dx.doi.org/10.5902/198050989279The tree growth and biomass accumulation, as well as the maintenance of forest residue at the soil surface can act in the removal of carbon from the atmosphere through the cycling process of plant material. The objective was to study the influence of Eucalyptus sp. Plantations with 20, 44 and 240 months of age on the variation of carbon in soil and biomass. The carbon in the soil depth was determined by CHNS auto-analyzer and carbon in the vegetation was determined by the biomass in each forest, considering a factor of 0.45 of the dry mass. We determined the density and particle size distribution of soil. For the comparison between plantations, there was analysis of variance and comparison of means of carbon in vegetation and soil, considering the 5% level of probability. The carbon content and stock in the soil were low, indicating that a natural feature of the category of Paleuldt, or the growth of eucalyptus forests, replacing the field native vegetation did not aggregate a significant increase in the carbon. Although, there was a significant increase carbon in aboveground biomass. It includes forest biomass and litter. So, despite the values ​​of carbon stocks are low, it identified a greater average total in the soil compared to the stock aboveground. Furthermore, this increase aboveground (tree and litter compartments can be considered significant between the eucalyptus plantations of different ages.

EFFECT OF FERTILIZATION ON MECHANICAL PROPERTIES OF THE WOOD OF Eucalyptus grandis

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Israel Luiz de Lima

2011-09-01

Full Text Available The effect of the fertilization in the amount and quality of the produced wood is one of the questions to be considered in the research of the Eucalyptus grandis. The present work aimed to evaluate the fertilization effect in the mechanical properties of Eucalyptus grandis. The population of Eucalyptus grandis was 21 years old and was managed under the system of selective thinning, with application of fertilizers. The factors used in this study were: presence or absence of fertilizers, two positions of log and five radial positions. The influences of the factors and of their combinations were evaluated regarding to compression strength, shear strength, modulus of rupture and modulus of elasticity in static banding. The compressive strength and the modulus of elasticity had been influenced by the factors: fertilizer and radial positions of the log. There was also an increase in the direction of the pith-bark in all studied properties. A good positive relationship was found to exist among the compression strength, the shear, the modulus of rupture and the modulus of elasticity with radial position.

Genetic diversity among four Eucalyptus species (myrtaceae) based ...

African Journals Online (AJOL)

The results indicate that 16 positive and 13 negative markers were detected. The marker fragments size ranged between 175 to 630 bp for the negative markers and 235 to 945 bp for the positive markers. Key words: Eucalyptus, random amplified polymorphic DNA (RAPD), genetic diversity, DNA fingerprinting PCR, ...

Genetic improvement of Eucalyptus grandis using breeding seedling ...

African Journals Online (AJOL)

Eucalyptus grandis is commercially important in Zimbabwe and a breeding program has been in progress since 1962. A classical breeding strategy was used initially but, in 1981, the Multiple Population Breeding Strategy (MPBS) was implemented and the concept of the Breeding Seedling Orchard (BSO) became central to ...

MANEJO DO SOLO E CRESCIMENTO INICIAL DE Eucalyptus grandis Hill ex Maiden EM ARGISSOLO

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Juliana Prevedello

2013-01-01

Full Text Available The forest species cultivation with rapid growth in Brazil has increased, mainly due to the diverse use of its wood and climate adaptation. The cultivation with minimum tillage in the forest sector stands out a way to increase productivity, combined with the maintenance of biodiversity and soil conservation. This study was conducted at the experimental area of State Foundation for Agricultural Research - Research Center for Forestry in Santa Maria - RS, with aimed to evaluate the effect of the soil tillage methods on soil physical properties and on initial development of Eucalyptus grandis, in a sandy loam Typic Hapludalf. Four soil management practices were compared: no-tillage; chisel tillage; chisel tillage plus harrowing and; rotary tillage (rotary tiller, installed in a randomized block design with three replications. The soil under no-tillage conditioned lower initial growth of eucalyptus due higher soil penetration resistance and bulk density, when compared with treatments with mobilization. The root distribution analysis in soil, despite being a qualitative method, was effective in demonstrating the effect of soil tillage for the Eucalyptus grandis plantation. The soil tillage with mobilization resulted in a higher initial growth of Eucalyptus grandis. The chisel tillage effects in the soil physical properties persisted after one year of soil tillage.

Effects of irrigation on water use and water use efficiency in two fast growing Eucalyptus plantations

Science.gov (United States)

Robert M. Hubbard; Jose Stape; Michael G. Ryan; Auro C. Almeida; Juan Rojas

2010-01-01

Eucalyptus plantations occupy almost 20 million ha worldwide and exceed 3.7 million ha in Brazil alone. Improved genetics and silviculture have led to as much as a three-fold increase in productivity in Eucalyptus plantations in Brazil and the large land area occupied by these highly productive ecosystems raises concern over their...

Review Paper Les plantations d'Eucalyptus au Sahel : distribution ...

African Journals Online (AJOL)

SOUMARE

la Francophonie pour avoir soutenu cette étude à travers une bourse de formation. RESUME ..... 1968-2000. Climat saharien. Climat sahélien. Climat soudano-sahélien. Frontières des .... universalis: Global cultivated Eucalyptus forests Map ...

Liquid nitrogen pretreatment of eucalyptus sawdust and rice hull for enhanced enzymatic saccharification.

Science.gov (United States)

Castoldi, Rafael; Correa, Vanesa G; de Morais, Gutierrez Rodrigues; de Souza, Cristina G M; Bracht, Adelar; Peralta, Rosely A; Peralta-Muniz Moreira, Regina F; Peralta, Rosane M

2017-01-01

In this work, liquid nitrogen was used for the first time in the pretreatment of plant biomasses for purposes of enzymatic saccharification. After treatment (cryocrushing), the initial rates of the enzymatic hydrolysis of eucalyptus sawdust and rice hull were increased more than ten-fold. Cryocrushing did not modify significantly the contents of cellulose, hemicellulose and lignin in both eucalyptus sawdust and rice hulls. However, substantial disorganization of the lignocellulosic materials in consequence of the pretreatment could be observed by electron microscopy. Cryocrushing was highly efficient in improving the saccharification of the holocellulose component of the plant biomasses (from 4.3% to 54.1% for eucalyptus sawdust and from 3.9% to 40.6% for rice hull). It is important to emphasize that it consists in a simple operation with low requirements of water and chemicals, no corrosion, no release of products such as soluble phenolics, furfural and hydroxymethylfurfural and no waste generation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Eficiência das auxinas (AIB e ANA no enraizamento de miniestacas de clones de Eucalyptus cloeziana F. Muell Auxin (IBA and NAA effects on minicuttings rooting of Eucalyptus cloeziana F. Muell. clones

Directory of Open Access Journals (Sweden)

Fernanda Daniele de Almeida

2007-01-01

Full Text Available Este trabalho teve como objetivo avaliar a eficiência das auxinas AIB (ácido indolbutírico e ANA (ácido naftalenoacético no enraizamento adventício de miniestacas de clones de Eucalyptus cloeziana. Foram utilizadas miniestacas provenientes de sete clones de Eucalyptus cloeziana, estabelecidos em minijardim clonal, sendo avaliados os efeitos de AIB (0, 1.500, 3.000 e 6.000 mg L-1 na forma líquida e em pó e ANA (0, 3.000 e 6.000 mg L-1 na forma líquida. Os resultados apontaram ser a miniestaquia técnica viável na propagação vegetativa dos clones de Eucalyptus cloeziana estudados, apresentando, de modo geral, alto índice de enraizamento das miniestacas. Os clones com maior potencial de enraizamento adventício responderam mais positivamente às menores dosagens de AIB, enquanto nos clones com capacidade de enraizamento reduzida houve tendência de as maiores dosagens de AIB serem mais eficientes no enraizamento, independentemente da forma de aplicação do fitorregulador (líquido ou pó. O ANA, de modo geral, não influenciou significativamente o enraizamento das miniestacas da maioria dos clones estudados.The present work aimed to evaluate the efficiency of the auxins IBA (indolbutyric acid and NAA (naphtaleneacetic acid on the adventitious rooting of Eucalyptus cloeziana clones. Minicuttings originated from seven Eucalyptus cloeziana clones established in mini-clonal hedge, were evaluated for the effects of IBA (0, 1500, 3000 and 6000 mg L-1 in the liquid and powder forms and NAA (0, 3000 and 6000 mg L-1 in the liquid form. The results showed that minicutting is a viable technique for vegetative propagation of the studied Eucalyptus cloeziana clones, with overall high rooting rates. Clones with higher adventitious rooting potential gave better response to lower IBA doses, while clones with reduced rooting potential were more efficient with higher doses, independently of the form of the applied phytoregulator (powder or liquid. NAA

Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers

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Gao Zhihong

2010-07-01

Full Text Available Abstract Background Expressed Sequence Tag (EST has been a cost-effective tool in molecular biology and represents an abundant valuable resource for genome annotation, gene expression, and comparative genomics in plants. Results In this study, we constructed a cDNA library of Prunus mume flower and fruit, sequenced 10,123 clones of the library, and obtained 8,656 expressed sequence tag (EST sequences with high quality. The ESTs were assembled into 4,473 unigenes composed of 1,492 contigs and 2,981 singletons and that have been deposited in NCBI (accession IDs: GW868575 - GW873047, among which 1,294 unique ESTs were with known or putative functions. Furthermore, we found 1,233 putative simple sequence repeats (SSRs in the P. mume unigene dataset. We randomly tested 42 pairs of PCR primers flanking potential SSRs, and 14 pairs were identified as true-to-type SSR loci and could amplify polymorphic bands from 20 individual plants of P. mume. We further used the 14 EST-SSR primer pairs to test the transferability on peach and plum. The result showed that nearly 89% of the primer pairs produced target PCR bands in the two species. A high level of marker polymorphism was observed in the plum species (65% and low in the peach (46%, and the clustering analysis of the three species indicated that these SSR markers were useful in the evaluation of genetic relationships and diversity between and within the Prunus species. Conclusions We have constructed the first cDNA library of P. mume flower and fruit, and our data provide sets of molecular biology resources for P. mume and other Prunus species. These resources will be useful for further study such as genome annotation, new gene discovery, gene functional analysis, molecular breeding, evolution and comparative genomics between Prunus species.

Rearing of Thyrinteina arnobia (Lepidoptera: Geometridae on guava and Eucalyptus in laboratory

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Harley Nonato de Oliveira

2005-09-01

Full Text Available Thyrinteina arnobia, is one of the most important defoliating caterpillars of Eucalyptus in Brazil The objective of this work was to evaluate the development and the reproduction of feeding on leaves of guava (Psidium guajava or Eucalyptus grandis in the 15th generation, after rearing this species for 14 genrations on guava leaves. T. arnobia showed shorter larval period, better viability of caterpillars and pupae, heavier pupae, higher number of eggs per female, better egg viability and shorter longevity of females in guava leaves than in Eucalyptus leaves. The better development and reproduction with P. guajava showed that this insect could be reared in laboratory with guava leaves.Thyrinteina arnobia, é umas das mais importantes lagartas desfolhadoras de eucalipto no Brasil. O objetivo desse trabalho foi avaliar o desenvolvimento e a reprodução desse lepidóptero em folhas de goiabeira (Psidium guajava e Eucalyptus grandis, na 15º geração, após criar essa espécie por 14 gerações em folhas de goiabeira. T. arnobia apresentou menor período larval, maior viabilidade de lagartas e de pupas, maior peso pupal, maior número de ovos totais por fêmea e viabilidade de ovos e menor longevidade de fêmeas com folhas de goiabeira. Além disso, teve melhor desempenho e reprodução com P. guajava, do que com folhas de E. grandis, mostrando que esse inseto pode ser criado com folhas de goiabeira em laboratório.

DENDROMETRY CHARACTERISTICS OF EUCALYPTUS UROPHYLLA IN SILVOPASTORAL SYSTEM UNDER DIFFERENT PLANTING SPACINGS WITH BRACHIARIA DECUMBENS

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Raphael Pavesi Araujo

2011-12-01

Full Text Available The objective of this study was to evaluate the effect of spacing on eucalyptus dendrometric characteristics in silvopastoral system with Brachiaria decumbens. Three eucalyptus spacing were used (3x2, 6x4 and 10x4 m. The randomized block design was used with factorial scheme (3x4 with three densities of planting eucalyptus (3x2, 6x4 and 10x4 m and four times of evaluation (6, 12, 18 and 24 months after planting. The dendrometric characteristics were evaluated: 0,30 m diameter, diameter at breast height - 1.30 m (DBH, cup diameter, height, biomass per tree and plant survival. It was found positive effect of months of evaluation for the diameter to 0.30 m, cup diameter and height. There were no effects of spacing for the variables DBH, survival and biomass per tree when evaluated at 24 months. There was effect for biomass per hectare being 3x2 m the best treatament. It can be concluded that the planting spacing only affected the biomass per hectare, when evaluated up to 24 months of Eucalyptus urophylla grown in silvopastoral system.

Differential effects of simple repeating DNA sequences on gene expression from the SV40 early promoter.

Science.gov (United States)

Amirhaeri, S; Wohlrab, F; Wells, R D

1995-02-17

The influence of simple repeat sequences, cloned into different positions relative to the SV40 early promoter/enhancer, on the transient expression of the chloramphenicol acetyltransferase (CAT) gene was investigated. Insertion of (G)29.(C)29 in either orientation into the 5'-untranslated region of the CAT gene reduced expression in CV-1 cells 50-100 fold when compared with controls with random sequence inserts. Analysis of CAT-specific mRNA levels demonstrated that the effect was due to a reduction of CAT mRNA production rather than to posttranscriptional events. In contrast, insertion of the same insert in either orientation upstream of the promoter-enhancer or downstream of the gene stimulated gene expression 2-3-fold. These effects could be reversed by cotransfection of a competitor plasmid carrying (G)25.(C)25 sequences. The results suggest that a G.C-binding transcription factor modulates gene expression in this system and that promoter strength can be regulated by providing protein-binding sites in trans. Although constructs containing longer tracts of alternating (C-G), (T-G), or (A-T) sequences inhibited CAT expression when inserted in the 5'-untranslated region of the CAT gene, the amount of CAT mRNA was unaffected. Hence, these inhibitions must be due to posttranscriptional events, presumably at the level of translation. These effects of microsatellite sequences on gene expression are discussed with respect to recent data on related simple repeat sequences which cause several human genetic diseases.

Targeting oxidative stress, acetylcholinesterase, proinflammatory cytokine, dopamine and GABA by eucalyptus oil (Eucalyptus globulus) to alleviate ketamine-induced psychosis in rats.

Science.gov (United States)

Yadav, Monu; Jindal, Deepak Kumar; Parle, Milind; Kumar, Anil; Dhingra, Sameer

2018-02-20

Essential oil of eucalyptus species is among the most common traded essential oils in the world. There is an increasing interest in the application of eucalyptus oil as a natural additive in food and pharmaceutical industry. The present study was undertaken to identify the phytoconstituents present in the essential oil of Eucalyptus globulus leaves (EO) and ascertain their protective effect against ketamine-induced psychosis in rats. GC-MS technique was used for analysis of phytoconstituents present in EO. Ketamine (50 mg/kg, i.p.) was used to induce psychosis in rats. Photoactometer, forced swim test and pole climb avoidance test were used to evaluate the protective effects of the EO (500, 1000 and 2000 mg/kg, p.o.) on acute and chronic administration. Bar test was used to test the side effect of EO. Biochemical and neurochemical estimations were carried out to explore the possible mechanism of action. GC-MS analysis of EO showed the presence of a number of biologically active compounds. EO at the dose of 500, 1000 and 2000 mg/kg, p.o. on acute and chronic administration, decreased locomotor activity, immobility duration and latency to climb the pole. EO was effective to facilitate the release of GABA, increase GSH levels, inhibit dopamine neurotransmission and decrease TNF-α levels as well as diminish AChE activity in different regions of the brain. EO at the dose of 500, 1000 mg/kg did not produce cataleptic behavior in rats. EO at the dose of 500, 1000 mg/kg produced protective effects against ketamine-induced psychosis and can be further explored clinically against neuropsychiatric disorders.

Diagnosing foliar nutrient dynamics of Eucalyptus grandis in ...

African Journals Online (AJOL)

Fertilisation is one of the most cost-effective methods of increasing and maintaining the productivity of Eucalyptus grandis plantations in South Africa. This silvicultural practice can be optimised by using the foliar nutrient ratios measured in plants at maximum growth as a guideline for fertiliser application. The foliar nutrient ...

Assessment of acidity levels in Eucalyptus Camaldulensis barks ...

African Journals Online (AJOL)

Bark samples of Eucalyptus camaldulensis obtained from Bauchi and Gombe States were analysed spectrophotometrically for their sulphate-sulphur content. The aim was to assess the extent of sulphur pollution in the environment. The results showed that S concentration ranged from 0.79 to 1.70mg/g for samples from ...

Survey of transposable elements in sugarcane expressed sequence tags (ESTs

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Rossi Magdalena

2001-01-01

Full Text Available The sugarcane expressed sequence tag (SUCEST project has produced a large number of cDNA sequences from several plant tissues submitted or not to different conditions of stress. In this paper we report the result of a search for transposable elements (TEs revealing a surprising amount of expressed TEs homologues. Of the 260,781 sequences grouped in 81,223 fragment assembly program (Phrap clusters, a total of 276 clones showed homology to previously reported TEs using a stringent cut-off value of e-50 or better. Homologous clones to Copia/Ty1 and Gypsy/Ty3 groups of long terminal repeat (LTR retrotransposons were found but no non-LTR retroelements were identified. All major transposon families were represented in sugarcane including Activator (Ac, Mutator (MuDR, Suppressor-mutator (En/Spm and Mariner. In order to compare the TE diversity in grasses genomes, we carried out a search for TEs described in sugarcane related species O.sativa, Z. mays and S. bicolor. We also present preliminary results showing the potential use of TEs insertion pattern polymorphism as molecular markers for cultivar identification.

Compaction and soil fertility after eucalyptus harvesting using Feller Buncher and Skidder

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Ana Lúcia Piedade Sodero Martins Pincelli

2014-06-01

Full Text Available This study analyzed, the impact of Feller Buncher and Skidder traffic in harvesting areas of eucalyptus in Mogi Guaçu, considering the compaction and fertilization effects in the range of soil next to the carrier during the cycle of forest growth. An increase in soil compaction, caused by machinery traffic in topsoil (0-10 cm, was observed in the area recently harvested. The soils of the study areas, with eucalyptus 1.4 and 6.0 years old, showed good fertility conditions, especially the older area, where decomposition of forest residues possibly contributed to such fertility.

Unintentional exposure of young children to camphor and eucalyptus oils.

Science.gov (United States)

Flaman, Z; Pellechia-Clarke, S; Bailey, B; McGuigan, M

2001-02-01

Essential oils, such as camphorated and eucalyptus oils, are volatile oils that can be absorbed by mouth and through the skin; if ingested orally by children, they can be harmful, even life-threatening. To determine the frequency of essential oil ingestion among children in Toronto, Ontario. Charts from December 1995 through March 1997 at the Ontario Regional Poison Information Centre, The Hospital for Sick Children, Toronto were reviewed to collect information on calls about essential oil ingestion, and a search of MEDLINE articles from 1966 to 1998 was conducted using the key words: 'camphor', 'eucalyptus', 'paediatric', and 'poisoning'. Callers to the Poison Information Centre reported that 251 children had ingested an essential oil or product: eucalyptus oil 50 children; camphorated oil 18 children; VapAir (Drug Trading, Canada) vaporizing liquid 93 children; and Vicks VaporRub (Procter & Gamble, Canada) 90 children. The most common symptoms were cough, vomiting and cough associated with vomiting. Two children had seizures but recovered. The MEDLINE search found 18 reports of paediatric ingestion of the oils or oil products. The main symptoms were vomiting, lethargy, coma and seizures. One child died. Although widely used by health care consumers, essential oils and the products that contain them can be harmful when ingested by children. Further education for parents and other caregivers about the risks involved in exposure to these products is required.

Myrtus comunis and Eucalyptus camaldulensis cytotoxicity on breast cancer cells

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Hrubik Jelena D.

2012-01-01

Full Text Available In vitro cytotoxicity of methanol, ethyl acetate, n-buthanol, and water extracts of Myrtus communis L. and Eucalyptus camaldulensis Dehnh. was examined against two human breast cancer cell lines (MCF 7 and MDA-MB-231 using MTT and SRB assays. The results showed significant cytotoxic potential of examined extracts, with IC50 values ranging from 7 to 138 μg/ml for M. communis and 3-250 μg/ml for E. camaldulensis. The two plants generally expressed similar activity, and no significant difference in cell line’s sensitivity towards extracts was observed. The results indicate to M. communis and E. camaldulensis as candidates for thorough chemical analyses for identification of active compounds, and eventually for attention in the process of discovery of new natural products in the control of cancer. [Projekat Ministarstva nauke Republike Srbije, br. 173037 i br. 172058

Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.

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Brian B Tuch

Full Text Available Due to growing throughput and shrinking cost, massively parallel sequencing is rapidly becoming an attractive alternative to microarrays for the genome-wide study of gene expression and copy number alterations in primary tumors. The sequencing of transcripts (RNA-Seq should offer several advantages over microarray-based methods, including the ability to detect somatic mutations and accurately measure allele-specific expression. To investigate these advantages we have applied a novel, strand-specific RNA-Seq method to tumors and matched normal tissue from three patients with oral squamous cell carcinomas. Additionally, to better understand the genomic determinants of the gene expression changes observed, we have sequenced the tumor and normal genomes of one of these patients. We demonstrate here that our RNA-Seq method accurately measures allelic imbalance and that measurement on the genome-wide scale yields novel insights into cancer etiology. As expected, the set of genes differentially expressed in the tumors is enriched for cell adhesion and differentiation functions, but, unexpectedly, the set of allelically imbalanced genes is also enriched for these same cancer-related functions. By comparing the transcriptomic perturbations observed in one patient to his underlying normal and tumor genomes, we find that allelic imbalance in the tumor is associated with copy number mutations and that copy number mutations are, in turn, strongly associated with changes in transcript abundance. These results support a model in which allele-specific deletions and duplications drive allele-specific changes in gene expression in the developing tumor.

Main lepidopteran pest species from an eucalyptus plantation in Minas Gerais, Brazil

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Teresinha V Zanuncio

2006-06-01

Full Text Available Lepidoptera species were monitored in a plantation of Eucalyptus grandis in the Municipality of Bom Despacho, State of Minas Gerais, Brazil from March 1987 to February 1992. A total of 547 species were collected and divided in: primary pests: 13; secondary pests: 20; species without defined importance to eucalyptus: 79; and non-identified species: 435. These four groups had a mean of 5231.29; 338.18; 438.16 and 2222.87 individuals with a total of 8229.87 individuals collected per trap. The number of species without defined importance to eucalyptus, and non-identified species, increased during the collecting period of five years while those of primary and secondary pests showed similar numbers in all years. The most collected primary pests Thyrinteina arnobia Stoll and Stenalcidia sp. (Geometridae showed higher frequencies during the driest and coldest periods of the year, whereas Psorocampa denticulata Schaus (Notodontidae was most frequent during periods of higher rainfall. Species of groups III and IV increased in diversity with eucalyptus age. This area has a high probability of outbreaks of eucalyptus defoliating caterpillars, especially T. arnobia. For this reason, lepidopteran pests should be monitored in this plantation during the driest and coldest periods of the year, when they can reach population peaks. Rev. Biol. Trop. 54(2: 553-560. Epub 2006 Jun 01.De marzo de 1987 a febrero de 1992 se realizó un monitoreo con trampas luminosas en plantaciones de Eucalyptus grandis en Bom Despacho, Minas Gerais, Brasil. Se recolectaron 547 especies del orden Lepidoptera: plagas primarias: 13; plagas secundarias: 20; especies sin importancia definida para el cultivo de eucalipto: 79; y especies no identificadas: 435. Estos cuatro grupos tuvieron medias de 5231.29; 338,18; 438.16 y 2222.87 individuos por trampa respectivamente, para un total de 8229.87 lepidopteros recolectados por trampa. Durante los cinco años hubo un aumento del número de

Modelos de predição para sobrevivência de plantas de Eucalyptus grandis Prediction models of Eucalyptus grandis plant survival

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Telde Natel Custódio

2009-01-01

Full Text Available Objetivou-se com este trabalho comparar modelos de predição de plantas sobreviventes de Eucalyptus grandis. Utilizaram-se os seguintes modelos: modelo linear misto com os dados transformados, utilizando-se as transformações angular e BOX-COX; modelo linear generalizado misto com distribuição binomial e funções de ligação logística, probit e complemento log-log; modelo linear generalizado misto com distribuição Poisson e função de ligação logarítmica. Os dados são provenientes de um experimento em blocos ao acaso, para avaliação de progênies maternas de Eucalyptus grandis, aos 5 anos de idade, em que a variável resposta são plantas sobreviventes. Para comparação dos efeitos entre os modelos foram estimadas as correlações de Spearman e aplicado o teste de permutação de Fisher. Foi possível concluir que, o modelo linear generalizado misto com distribuição Poisson e função de ligação logarítmica se ajustou mal aos dados e que as estimativas para os efeitos fixos e predição para os efeitos aleatórios, não se diferenciaram entre os demais modelos estudados.The objective of this work was to compare models for prediction of the survival of plants of Eucalyptus grandis. The following models were used: linear mixed model with the transformed data, by utilizing the angular transformations and BOX-COX; generalized linear mixed model with binomial distribution and logistic functions, probit and complement log-log links; generalized linear mixed model with Poisson distribution and logarithmic link function. The data came from a randomized block experiment for evaluation of Eucalyptus grandis maternal progenies at five years old, in which the variable response are surviving plants. For comparison of the effects among the models the correlations of Spearman were estimated and the test of permutation of Fisher was applied. It was possible to conclude that: the generalized linear mixed model with Poisson distribution and

Molecular characterization, sequence analysis and tissue expression of a porcine gene – MOSPD2

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Yang Jie

2017-01-01

Full Text Available The full-length cDNA sequence of a porcine gene, MOSPD2, was amplified using the rapid amplification of cDNA ends method based on a pig expressed sequence tag sequence which was highly homologous to the coding sequence of the human MOSPD2 gene. Sequence prediction analysis revealed that the open reading frame of this gene encodes a protein of 491 amino acids that has high homology with the motile sperm domain-containing protein 2 (MOSPD2 of five species: horse (89%, human (90%, chimpanzee (89%, rhesus monkey (89% and mouse (85%; thus, it could be defined as a porcine MOSPD2 gene. This novel porcine gene was assigned GeneID: 100153601. This gene is structured in 15 exons and 14 introns as revealed by computer-assisted analysis. The phylogenetic analysis revealed that the porcine MOSPD2 gene has a closer genetic relationship with the MOSPD2 gene of horse. Tissue expression analysis indicated that the porcine MOSPD2 gene is generally and differentially expressed in the spleen, muscle, skin, kidney, lung, liver, fat and heart. Our experiment is the first to establish the primary foundation for further research on the porcine MOSPD2 gene.

Sequence and expression analysis of gaps in human chromosome 20

DEFF Research Database (Denmark)

Minocherhomji, Sheroy; Seemann, Stefan; Mang, Yuan

2012-01-01

/or overlap disease-associated loci, including the DLGAP4 locus. In this study, we sequenced ~99% of all three unfinished gaps on human chr 20, determined their complete genomic sizes and assessed epigenetic profiles using a combination of Sanger sequencing, mate pair paired-end high-throughput sequencing......The finished human genome-assemblies comprise several hundred un-sequenced euchromatic gaps, which may be rich in long polypurine/polypyrimidine stretches. Human chromosome 20 (chr 20) currently has three unfinished gaps remaining on its q-arm. All three gaps are within gene-dense regions and...... and chromatin, methylation and expression analyses. We found histone 3 trimethylated at Lysine 27 to be distributed across all three gaps in immortalized B-lymphocytes. In one gap, five novel CpG islands were predominantly hypermethylated in genomic DNA from peripheral blood lymphocytes and human cerebellum...

Potential implications for expansion of freeze-tolerant eucalyptus plantations on water resources in the southern United States

Science.gov (United States)

James M. Vose; Chelcy F. Miniat; Ge Sun; Peter V. Caldwell

2014-01-01

The potential expansion of freeze-tolerant (FT) Eucalyptus plantations in the United States has raised concerns about the implications for water resources. Modeling was used to examine the potential effects of expanding the distribution of FT Eucalyptus plantations in US Department of Agriculture Plant Hardiness Zones 8b and...

Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression.

Science.gov (United States)

McCoy, Rajiv C; Wakefield, Jon; Akey, Joshua M

2017-02-23

Regulatory variation influencing gene expression is a key contributor to phenotypic diversity, both within and between species. Unfortunately, RNA degrades too rapidly to be recovered from fossil remains, limiting functional genomic insights about our extinct hominin relatives. Many Neanderthal sequences survive in modern humans due to ancient hybridization, providing an opportunity to assess their contributions to transcriptional variation and to test hypotheses about regulatory evolution. We developed a flexible Bayesian statistical approach to quantify allele-specific expression (ASE) in complex RNA-seq datasets. We identified widespread expression differences between Neanderthal and modern human alleles, indicating pervasive cis-regulatory impacts of introgression. Brain regions and testes exhibited significant downregulation of Neanderthal alleles relative to other tissues, consistent with natural selection influencing the tissue-specific regulatory landscape. Our study demonstrates that Neanderthal-inherited sequences are not silent remnants of ancient interbreeding but have measurable impacts on gene expression that contribute to variation in modern human phenotypes. Copyright © 2017 Elsevier Inc. All rights reserved.

Metabolic responses of Eucalyptus species to different temperature regimes

NARCIS (Netherlands)

Mokochinski, Joao Benhur; Mazzafera, Paulo; Sawaya, Alexandra Christine Helena Frankland; Mumm, Roland; Vos, de Ric Cornelis Hendricus; Hall, Robert David

2018-01-01

Species and hybrids of Eucalyptus are the world's most widely planted hardwood trees. They are cultivated across a wide range of latitudes and therefore environmental conditions. In this context, comprehensive metabolomics approaches have been used to assess how different temperature regimes may

SHEAR STRENGTH IN THE GLUE LINE OF Eucalyptus sp. AND Pinus sp.WOOD

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Juliana Jerásio Bianche

Full Text Available ABSTRACT To evaluate the adhesive efficiency on the union of glued joints in a particular temperature and humidity conditions for a specified time the adhesive must be submitted to specific load tests, such as shear in the glue line. The objective of this study was to evaluate the shear strength in the glue line of Eucalyptus sp and Pinus sp.woods. Five adhesives (castor oil, sodium silicate, modified silicate, , PVA and resorcinol-formaldehyde, three weights (150 g/m2, 200 g/m2, and 250 g/m2 and two species (Eucalyptus sp. and Pinus sp. of wood were used. Twelve specimens were obtained from each repetition per treatment, corresponding to 108 specimens that were conditioned at a temperature of 23 ± 1°C and relative humidity of 50 ± 2%. The interaction between the weight and type of adhesive was significant for the shear strength in the glue line of eucalyptus wood. However, no interaction between the weight and the adhesive was found for pinus, only the isolated from the adhesive effect. Chemical bonds originated in the polymerization of resorcinol-formaldehyde adhesives and castor bi-component conferred upon these adhesives the greatest resistance in the glue line. Castor and resorcinol-formaldehyde adhesives showed the highest shear strength values in the line of glue and wood failure. Castor adhesive presented satisfactory performance for bonding of eucalyptus and pine woods.

Effect of ATRX and G-Quadruplex Formation by the VNTR Sequence on α-Globin Gene Expression.

Science.gov (United States)

Li, Yue; Syed, Junetha; Suzuki, Yuki; Asamitsu, Sefan; Shioda, Norifumi; Wada, Takahito; Sugiyama, Hiroshi

2016-05-17

ATR-X (α-thalassemia/mental retardation X-linked) syndrome is caused by mutations in chromatin remodeler ATRX. ATRX can bind the variable number of tandem repeats (VNTR) sequence in the promoter region of the α-globin gene cluster. The VNTR sequence, which contains the potential G-quadruplex-forming sequence CGC(GGGGCGGGG)n , is involved in the downregulation of α-globin expression. We investigated G-quadruplex and i-motif formation in single-stranded DNA and long double-stranded DNA. The promoter region without the VNTR sequence showed approximately twofold higher luciferase activity than the promoter region harboring the VNTR sequence. G-quadruplex stabilizers hemin and TMPyP4 reduced the luciferase activity, whereas expression of ATRX led to a recovery in reporter activity. Our results demonstrate that stable G-quadruplex formation by the VNTR sequence downregulates the expression of α-globin genes and that ATRX might bind to and resolve the G-quadruplex. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

PREFERÊNCIA DE CORTE DE Eucalyptus spp. POR Acromyrmex laticeps nigrosetosus FOREL, 1908 (HYMENOPTERA: FORMICIDAE EM CONDIÇÕES DE LABORATÓRIO

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Alberto Luiz Marsaro Júnior

2007-06-01

Full Text Available O objetivo deste trabalho foi avaliar a preferência de corte das operárias de Acromyrmex laticeps nigrosetosus Forel, 1908, em três espécies e um clone de eucalipto. Plantas de Eucalyptus urophylla S.T. Blake, 1977, Eucalyptus cloeziana F. Muell., 1878, Eucalyptus camaldulensis Dehnh., 1832, e o Clone 129 foram oferecidas, simultaneamente, para três colônias de Acromyrmex laticeps nigrosetosus Forel, 1908. O bioensaio finalizou 6 horas após o seu início ou até que uma das colônias cortasse todas as folhas de um dos eucaliptos oferecidos. As colônias cortaram e carregaram, em média, 0,453g ± 0,064 de Eucalyptus camaldulensis; 0,384g ± 0,052 do Clone 129; 0,341g ± 0,054 de Eucalyptus urophylla e 0,102 ± 0,027 de Eucalyptus cloeziana, sendo essa última a espécie menos preferida para o corte. Por outro lado, não houve diferença significativa entre a quantidade de folhas cortadas nos outros eucaliptos.

Sorption of U(VI) and Am(III) on Eucalyptus Biochar

International Nuclear Information System (INIS)

Mishra, Vijayakriti; Sureshkumar, M.K.; Kaushik, C.P.

2016-01-01

Biochar is partially oxidized residues from substrates of biological origin. Due to their binding properties with various organic and inorganic pollutants, these materials are widely studied for pollutant abatement both in field studies and laboratory investigations. Though large quantity of information is available on the use of biochar of various origin for heavy metals, studies pertaining to their use in radionuclide sorption are scarce in literature. Here we are reporting the sorption characteristics of U(VI) and Am(III) on to eucalyptus biochar as a function of various operating parameters such as solution pH, initial metal ion concentration, contact time and ionic strength of the medium. Overall the present studies shows that eucalyptus biochar is a suitable sorbent for the sorption of heavy radionuclides from aqueous solutions

Variation in composition and yield of foliage oil of eucalyptus polybractea

International Nuclear Information System (INIS)

Iqbal, Z.; Akhtar, M.; Qureshi, T.M.; Ahhter, J.; Ahmad, R.

2011-01-01

Eucalyptus polybractea (blue mallee) is the essential oil rich species used in the commercial production of pharmaceutical-grade Eucalyptus oil in Australia. This species was grown at Nuclear Institute for Agriculture and Biology (NIAB), Faisalabad, Pakistan during 2004-08 to investigate the quantity and quality of its foliage oil. The oils were extracted by hydro-distillation method, from the leaves of four year aged ten E. polybractea plants. The data showed a significant intra-species variation in their oil contents (29.3 to 41.8 mg g-1 fresh weight of leaves). Out of ten plants eight contained oil >30 mg g/sup -1/ fresh weight of leaves. The components of the extracted oils varied from 12-26 as detected by GC/FID on Carbowax 20 M packed glass column. Among all the oil components, 1, 8-cineole was the major compound (91.7-94.2 %), while the other identified compounds were alpha-pinene (0-1.2 %), beta-pinene (0.4-2.3 %), limonene (0.2-1.3 %), p-cymene (1.23-2.75 %), and terpinene-4-ol (0.6-0.92 %). The extracted oils from all the Eucalyptus polybractea plants contained high amount of 1, 8-cineole (>90 %), therefore, classified as species of high quality medicinal oil. (author)

Replication error deficient and proficient colorectal cancer gene expression differences caused by 3'UTR polyT sequence deletions

DEFF Research Database (Denmark)

Wilding, Jennifer L; McGowan, Simon; Liu, Ying

2010-01-01

, and have distinct pathologies. Regulatory sequences controlling all aspects of mRNA processing, especially including message stability, are found in the 3'UTR sequence of most genes. The relevant sequences are typically A/U-rich elements or U repeats. Microarray analysis of 14 RER+ (deficient) and 16 RER......- (proficient) colorectal cancer cell lines confirms a striking difference in expression profiles. Analysis of the incidence of mononucleotide repeat sequences in the 3'UTRs, 5'UTRs, and coding sequences of those genes most differentially expressed in RER+ versus RER- cell lines has shown that much...... of this differential expression can be explained by the occurrence of a massive enrichment of genes with 3'UTR T repeats longer than 11 base pairs in the most differentially expressed genes. This enrichment was confirmed by analysis of two published consensus sets of RER differentially expressed probesets for a large...

TEORES DE NUTRIENTES EM POVOAMENTOS MONOESPECÍFICOS E MISTOS DE Eucalyptus urograndis e Acacia mearnsii em SISTEMA AGROSSILVICULTURAL

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Márcio Viera

2013-01-01

Full Text Available The study had as objective compare the nutrients content in the different species involved in monospecific and mixed stands of Eucalyptus urograndis and Acacia mearnsii and in a consortium with Zea mays. The determination for forest species nutrients concentration, the treatments 100E (100 % eucalyptus + maize; 100A (100 % black-wattle + maize and 50E:50A (50 % eucalyptus + 50 % black-wattle + maize, and in the maize were done in treatments 100E; 100A, 50E:50A; 75E:25A (75 % eucalyptus + 25 % black-wattle + maize and 25E:75A (25 % eucalyptus + 75 % black-wattle + maize. The experimental design was a randomized block design with three replications. Forests species sampling was made in average tree in each plot, based on diameter at breast height (DBH, in three trees six month-old per treatment. Within all treatments and your replicates, installed one subplot with long 3.0 m by three corn-rows as wide, where the plants were harvested in stem, leaf, grain, cob and straw. With the exception of Ca, which was more concentrated in the bark fraction and Mg and B in the bark and leaves, the other nutrients in Eucalyptus urograndis, so in monoculture much in mixed stands, contained higher concentration just in leaves. The grain component has the highest concentrations of nitrogen and phosphorus, as straw and cob have the highest potassium concentration and the leaf component has the largest concentrations of other nutrients. The forest species did not influence significantly the levels of nutrients in components of aboveground biomass of maize.

Effects of the interception of litterfall by the understory on carbon cycling in eucalyptus plantations of South China.

Science.gov (United States)

Yang, Long; Wang, Jun; Huang, Yuhui; Hui, Dafeng; Wen, Meili

2014-01-01

For the purposes of forest restoration, carbon (C) fixation, and economic improvement, eucalyptus (Eucalyptus urophylla) has been widely planted in South China. The understory of eucalyptus plantations is often occupied by a dense community of the fern Dicranopteris dichotoma, which intercepts tree canopy leaf litter before it reaches the ground. To understand the effects of this interception of litterfall on C cycling in eucalyptus plantations, we quantified the mass of intercepted litter and the influences of litterfall interception on litter decomposition and soil respiration. The total mass of E. urophylla litterfall collected on the understory was similar to that collected by the traditional litter trap method. All of the eucalyptus litterfall is intercepted by the D. dichotoma canopy. Of the litterfall that was intercepted by D. dichotoma, 20-40% and 60-80% was intercepted by the top (50-100 cm) and bottom (0-50 cm) of the understory canopy, respectively. Intercepted litterfall decomposed faster at the bottom of understory canopy (at the base of the plants) than at the top, and decomposition was slower on the soil surface in the absence of understory than on any location in the understory canopy. Soil respiration was highest when both the understory and litter were present and was lowest when both the understory and litter were absent. These results indicate that litterfall interception changed carbon flow between aboveground and belowground through litter decomposition and soil respiration, which changed carbon cycling in eucalyptus plantations. The effects of the understory on litter decomposition and soil respiration should be considered in ecosystem carbon models.

Effects of the interception of litterfall by the understory on carbon cycling in eucalyptus plantations of South China.

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Long Yang

Full Text Available For the purposes of forest restoration, carbon (C fixation, and economic improvement, eucalyptus (Eucalyptus urophylla has been widely planted in South China. The understory of eucalyptus plantations is often occupied by a dense community of the fern Dicranopteris dichotoma, which intercepts tree canopy leaf litter before it reaches the ground. To understand the effects of this interception of litterfall on C cycling in eucalyptus plantations, we quantified the mass of intercepted litter and the influences of litterfall interception on litter decomposition and soil respiration. The total mass of E. urophylla litterfall collected on the understory was similar to that collected by the traditional litter trap method. All of the eucalyptus litterfall is intercepted by the D. dichotoma canopy. Of the litterfall that was intercepted by D. dichotoma, 20-40% and 60-80% was intercepted by the top (50-100 cm and bottom (0-50 cm of the understory canopy, respectively. Intercepted litterfall decomposed faster at the bottom of understory canopy (at the base of the plants than at the top, and decomposition was slower on the soil surface in the absence of understory than on any location in the understory canopy. Soil respiration was highest when both the understory and litter were present and was lowest when both the understory and litter were absent. These results indicate that litterfall interception changed carbon flow between aboveground and belowground through litter decomposition and soil respiration, which changed carbon cycling in eucalyptus plantations. The effects of the understory on litter decomposition and soil respiration should be considered in ecosystem carbon models.

Efeito "in vitro" de antibióticos e rizobactérias no controle de bactérias fitopatogênicas ao Eucalyptus spp. "In vitro" effect of antibiotics and rhizobacteria on the control of phytopathogenic bacteria in Eucalyptus spp.

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Jeane de Fátima Cunha

2006-12-01

Full Text Available Doenças causadas por bactérias constituem um novo desafio à cultura do Eucalyptus spp., podendo, inclusive, limitar o uso de clones suscetíveis. O presente trabalho objetivou avaliar a eficiência de antibióticos e rizobactérias na inibição do crescimento "in vitro" de isolados de bactérias fitopatogênicas ao Eucalyptus spp. na fase de viveiro e de campo. O antibiótico sulfato de amicacina e a rizobactéria S1 (Bacillus subtillis destacaram-se quanto à inibição do crescimento do isolado fitopatogênico IP1-05 (Pseudomonas chichorii, enquanto a cefoxitina causou maior inibição dos isolados BSV16 e RVV11 (Rhizobium sp.. Os antibióticos de uso comercial na área agronômica, Mycoshield (oxitetraciclina e Agrimicina (estreptomicina e tetraciclina foram pouco efetivos. Este trabalho proporciona embasamento a alternativas para controle biológico de doenças bacterianas em mudas de Eucalyptus spp. na fase de viveiro.Diseases caused by bacteria represent a new challenge for Eucalyptus spp. and may also limit the use of susceptible clones. Our study aimed at an evaluation of the efficiency of antibiotics and rhizobacteria in inhibiting "in vitro" growth of phytopathogenic bacteria isolates in Eucalyptus spp. during the nursery stage and in the field. The antibiotic amicacine sulfate and rhizobacterium S1 (Bacillus subtilis stood out inhibiting the growth of the phytopathogenic isolate IP1-05 (Pseudomonas chichorii, whereas cefoxitin caused a greater inhibition of the isolates BSV16 and RVV11 (Rhizobium sp.. The commercial antibiotics for agricultural use Mycoshield (oxitetracycline and Agrimycin (estreptomycin and tetracycline were little effective. This study offers a base for alternatives of biological control of bacterial diseases in Eucalyptus spp. nursery seedlings.

Caracterização tecnológica, para produção de celulose, da nova geração de clones de Eucalyptus do Brasil Technological characterization of the new generation of Eucalyptus clones in Brazil for kraft pulp production

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José Lívio Gomide

2005-02-01

Full Text Available Foram analisados clones de Eucalyptus de última geração, pertencentes às principais empresas brasileiras de celulose. Os estudos consistiram numa caracterização tecnológica detalhada da qualidade das madeiras utilizadas no processamento fabril das empresas. Foram realizadas análise químicas detalhadas das madeiras e cozimentos kraft, simulando-se uma das modernas técnica de digestor contínuo. Os resultados indicaram a alta qualidade dos clones de Eucalyptus atualmente plantados no Brasil para produção de celulose.Last generation of Eucalyptus clones pulped by the main Brazilian kraft pulp mills were used for this study. Detailed chemical analysis of the woods were carried out to establish the wood quality. Laboratory simulation of a modern continuous digester technique was used for pulp production. Results demonstrated the high quality of Eucalyptus clones wood that are being planted in Brazil for kraft pulp production.

Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method

DEFF Research Database (Denmark)

Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine

2013-01-01

at identifying PfEMP1 features associated with high virulence. Here we present the first effective method for sequence analysis of var genes expressed in field samples: a sequential PCR and next generation sequencing based technique applied on expressed var sequence tags and subsequently on long range PCR......, encoded by ~60 highly variable 'var' genes per haploid genome. PfEMP1 is exported to the surface of infected erythrocytes and is thought to be fundamental to immune evasion by adhesion to host and parasite factors. The highly variable nature has constituted a roadblock in var expression studies aimed...

Eucalyptus globulus extract protects upon acetaminophen-induced kidney damages in male rat

Science.gov (United States)

Dhibi, Sabah; Mbarki, Sakhria; Elfeki, Abdelfettah; Hfaiedh, Najla

2014-01-01

Plants have historically been used in treating many diseases. Eucalyptus globules, a rich source of bioactive compounds, and have been shown to possess antioxidative properties. The purpose of this study, carried out on male Wistar rats, was to evaluate the beneficial effects of Eucalyptus globulus extract upon acetaminophen-induced damages in kidney. Our study is realized in the Department of Biology, Faculty of Sciences of Sfax (Tunisia). 32 Wistar male rats; were divided into 4 batches: a control group (n=8), a group of rats treated with acetaminophen (goomg/kg) by intraperitoneal injection during 4 days (n=8), a group receiving Eucalyptus globulus extract (130 mg of dry leaves/kg/day) in drinking water during 42 days after 2 hours of acetaminophen administration (during 4 days) (n=8) and group received only Eucalyptus (n=8) during 42 days. After 6 weeks, animals from each group were rapidly sacrificed by decapitation. Blood serum was obtained by centrifugation. Under our experimental conditions, acetaminophen poisoning resulted in an oxidative stress evidenced by statistically significant losses in the activities of catalase (CAT), superoxide-dismutase (SOD), glutathione-peroxidase (GPX) activities and an increase in lipids peroxidation level in renal tissue of acetaminophen-treated group compared with the control group. Acetaminophen also caused kidney damage as evident by statistically significant (p<0.05) increase in levels of creatinine and urea and decreased levels of uric acid and proteins in blood. Histological analysis demonstrated alteration of proximal tubules, atrophy of the glomerule and dilatation of urinary space. Previous administration of plant extract is found to alleviate this acetaminophen-induced damage. PMID:24856382

POLIAMINAS COMO MARCADORES BIOQUÍMICOS DE SALINIDADE EM CALOS DE Eucalyptus urograndis

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Giuseppina Pace Pereira Lima

2002-11-01

Full Text Available Marcadores bioquímicos têm sido usados na análise de plantas submetidas a vários tipos de estresse, entre eles a salinidade. Este trabalho teve como objetivo analisar o estresse salino em calos de Eucalyptus urograndis em relação ao conteúdo de poliaminas. Explantes (hipocótilos obtidos de sementes foram inoculados em meio indutivo de calos e foram submetidos a diferentes níveis de NaCl e analisados aos 10, 20 e 30 dias de inoculação. As poliaminas livres foram extraídas, isoladas e quantificadas usando TLC (Cromatografia de Camada Delgada. O conteúdo de putrescina foi maior, enquanto que o conteúdo de espermidina apresentou decréscimo, em calos submetidos a condições salinas. Os resultados mostram que o acúmulo de putrescina está relacionado com a exposição a NaCl em calos de Eucalyptus urograndis. A diminuição do conteúdo de espermina pode ser usada como marcador bioquímico de calos de Eucalyptus sujeitos à salinidade.

Modeling and optimization of extraction process of eucalyptus essential oil (Eucalyptus globulus

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Jeancarlos Moreno

2010-06-01

Full Text Available In this paper we have studied the effect of the moisture from the eucalyptus leaf and the time of extraction on the yield of essential oil and the production cost. We took into account parameters such as steam temperature, pressure extraction, porous bed, steam flow and temperature of condensation. A Central Composite Rotational Design was used to evaluate optimum extraction areas and the cost that would follow, searching always to increase yields and reduce costs. According to this design, the extraction with the lowest production costs (0.57 Nuevos Soles by mL of essential oil is reached when the leaves have moisture between 25 and 30% and are extracted with times between 98 and 126 min

dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond.

Science.gov (United States)

Stajdohar, Miha; Rosengarten, Rafael D; Kokosar, Janez; Jeran, Luka; Blenkus, Domen; Shaulsky, Gad; Zupan, Blaz

2017-06-02

Dictyostelium discoideum, a soil-dwelling social amoeba, is a model for the study of numerous biological processes. Research in the field has benefited mightily from the adoption of next-generation sequencing for genomics and transcriptomics. Dictyostelium biologists now face the widespread challenges of analyzing and exploring high dimensional data sets to generate hypotheses and discovering novel insights. We present dictyExpress (2.0), a web application designed for exploratory analysis of gene expression data, as well as data from related experiments such as Chromatin Immunoprecipitation sequencing (ChIP-Seq). The application features visualization modules that include time course expression profiles, clustering, gene ontology enrichment analysis, differential expression analysis and comparison of experiments. All visualizations are interactive and interconnected, such that the selection of genes in one module propagates instantly to visualizations in other modules. dictyExpress currently stores the data from over 800 Dictyostelium experiments and is embedded within a general-purpose software framework for management of next-generation sequencing data. dictyExpress allows users to explore their data in a broader context by reciprocal linking with dictyBase-a repository of Dictyostelium genomic data. In addition, we introduce a companion application called GenBoard, an intuitive graphic user interface for data management and bioinformatics analysis. dictyExpress and GenBoard enable broad adoption of next generation sequencing based inquiries by the Dictyostelium research community. Labs without the means to undertake deep sequencing projects can mine the data available to the public. The entire information flow, from raw sequence data to hypothesis testing, can be accomplished in an efficient workspace. The software framework is generalizable and represents a useful approach for any research community. To encourage more wide usage, the backend is open

Peanut (Arachis hypogaea Expressed Sequence Tag Project: Progress and Application

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Suping Feng

2012-01-01

Full Text Available Many plant ESTs have been sequenced as an alternative to whole genome sequences, including peanut because of the genome size and complexity. The US peanut research community had the historic 2004 Atlanta Genomics Workshop and named the EST project as a main priority. As of August 2011, the peanut research community had deposited 252,832 ESTs in the public NCBI EST database, and this resource has been providing the community valuable tools and core foundations for various genome-scale experiments before the whole genome sequencing project. These EST resources have been used for marker development, gene cloning, microarray gene expression and genetic map construction. Certainly, the peanut EST sequence resources have been shown to have a wide range of applications and accomplished its essential role at the time of need. Then the EST project contributes to the second historic event, the Peanut Genome Project 2010 Inaugural Meeting also held in Atlanta where it was decided to sequence the entire peanut genome. After the completion of peanut whole genome sequencing, ESTs or transcriptome will continue to play an important role to fill in knowledge gaps, to identify particular genes and to explore gene function.

Shoot and root morphogenesis from Eucalyptus grandis x urophylla ...

African Journals Online (AJOL)

Eucalyptus grandis x urophylla plantlets were regenerated via indirect organogenesis. Histological assessment of their development focused on identifying the calli, the differentiation of shoots from the calli and the shoot-root junction from the nascent shoots. Vascular tissue formation within the callus preceded that of ...

Growth models for six Eucalyptus species in Angola | Delgado ...

African Journals Online (AJOL)

This study developed growth models for Eucalyptus saligna Sm., E. camaldulensis Dehnh., E. macarthurii H.Deane & Maiden, E. resinifera Sm., E. siderophloia Benth. and E. grandis Hill ex. Maiden, for the central highlands of Angola, and used these models to simulate the development of stand characteristics.

ANALYSIS OF EUCALYPTUS GLUED-LAMINATED TIMBER PORTICOS STRUCTURAL PERFORMANCE

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Sandra Maria Ferreira Couri Petrauski

Full Text Available ABSTRACT This study evaluated the structural behavior of porticos made from eucalyptus glued boards, using wood of Eucalyptus sp and resorcinol formaldehyde adhesive. Three units, in real scale, of tri-articulated straight porticos, with a 5 meter porthole and a 26º inclination, capable to support tiles covering placement were designed, constructed and subjected to load testing, until rupture. The amount of adhesive used in the construction of the porticos was 250 g/m2 and the bonding pressure of 1.3 MPa. The Hankinson model was employed as an estimator of the glued joints strength, under different angles between the fibers. The average value for the last resistance of the structures was 4.63 times the design load, according to the criteria established by the ABNT, 1997. The structures showed satisfactory mechanical performance and deformations lower than the ones allowed by the standard. It was concluded there is technical feasibility to manufacture porticos fully bonded with small thickness veneers.

Predicted stand volume for Eucalyptus plantations by spatial analysis

Science.gov (United States)

Latifah, Siti; Teodoro, RV; Myrna, GC; Nathaniel, CB; Leonardo, M. F.

2018-03-01

The main objective of the present study was to assess nonlinear models generated by integrating the stand volume growth rate to estimate the growth and yield of Eucalyptus. The primary data was done for point of interest (POI) of permanent sample plots (PSPs) and inventory sample plots, in Aek Nauli sector, Simalungun regency,North Sumatera Province,Indonesia. from December 2008- March 2009. Today,the demand for forestry information has continued to grow over recent years. Because many forest managers and decision makers face complex decisions, reliable information has become the necessity. In the assessment of natural resources including plantation forests have been widely used geospatial technology.The yield of Eucalyptus plantations represented by merchantable volume as dependent variable while factors affecting yield namely stands variables and the geographic variables as independent variables. The majority of the areas in the study site has stand volume class 0 - 50 m3/ha with 16.59 ha or 65.85 % of the total study site.

Rapid in silico cloning of genes using expressed sequence tags (ESTs).

Science.gov (United States)

Gill, R W; Sanseau, P

2000-01-01

Expressed sequence tags (ESTs) are short single-pass DNA sequences obtained from either end of cDNA clones. These ESTs are derived from a vast number of cDNA libraries obtained from different species. Human ESTs are the bulk of the data and have been widely used to identify new members of gene families, as markers on the human chromosomes, to discover polymorphism sites and to compare expression patterns in different tissues or pathologies states. Information strategies have been devised to query EST databases. Since most of the analysis is performed with a computer, the term "in silico" strategy has been coined. In this chapter we will review the current status of EST databases, the pros and cons of EST-type data and describe possible strategies to retrieve meaningful information.

Advanced colorectal adenoma related gene expression signature may predict prognostic for colorectal cancer patients with adenoma-carcinoma sequence.

Science.gov (United States)

Li, Bing; Shi, Xiao-Yu; Liao, Dai-Xiang; Cao, Bang-Rong; Luo, Cheng-Hua; Cheng, Shu-Jun

2015-01-01

There are still no absolute parameters predicting progression of adenoma into cancer. The present study aimed to characterize functional differences on the multistep carcinogenetic process from the adenoma-carcinoma sequence. All samples were collected and mRNA expression profiling was performed by using Agilent Microarray high-throughput gene-chip technology. Then, the characteristics of mRNA expression profiles of adenoma-carcinoma sequence were described with bioinformatics software, and we analyzed the relationship between gene expression profiles of adenoma-adenocarcinoma sequence and clinical prognosis of colorectal cancer. The mRNA expressions of adenoma-carcinoma sequence were significantly different between high-grade intraepithelial neoplasia group and adenocarcinoma group. The biological process of gene ontology function enrichment analysis on differentially expressed genes between high-grade intraepithelial neoplasia group and adenocarcinoma group showed that genes enriched in the extracellular structure organization, skeletal system development, biological adhesion and itself regulated growth regulation, with the P value after FDR correction of less than 0.05. In addition, IPR-related protein mainly focused on the insulin-like growth factor binding proteins. The variable trends of gene expression profiles for adenoma-carcinoma sequence were mainly concentrated in high-grade intraepithelial neoplasia and adenocarcinoma. The differentially expressed genes are significantly correlated between high-grade intraepithelial neoplasia group and adenocarcinoma group. Bioinformatics analysis is an effective way to study the gene expression profiles in the adenoma-carcinoma sequence, and may provide an effective tool to involve colorectal cancer research strategy into colorectal adenoma or advanced adenoma.

Effects of exotic Eucalyptus spp. plantations on soil properties in and around sacred natural sites in the northern Ethiopian Highlands

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Alemayehu Wassie

2016-04-01

Full Text Available Species of the genus Eucalyptus (common name eucalyptus are widely planted all across Ethiopia—including on large areas of land previously allocated to food production. In recent decades eucalyptus has also increasingly been planted on lands around and within “church forests,” sacred groves of old-aged Afromontane trees surrounding Ethiopian Orthodox Tewahido churches. These revered holy sites have long been recognized for their cultural values and also for their ecosystem services—including their potential to support species conservation and restoration, as church forests are some of the only remaining sanctuaries for many of Ethiopia’s indigenous and endemic plant and animal populations. Ethiopian Orthodox church communities have a long history of planting and nurturing indigenous tree seedlings to sustain church forest groves. However, due to the fast-growing nature of eucalyptuscombined with its widely recognized socio-economic benefits (as fuelwood, charcoal, construction wood, etc., this introduced species has been widely plantedaround church forests—in some cases even replacing native tree species within church forests themselves. In many developing country contexts the introduction of exotic eucalyptus has been shown to have ecological impacts ranging from soil nutrient depletion, to lowering water tables, to allelopathic effects. In this study, we collected soil samples from indigenous forest fragments (church forests, adjacent eucalyptus plantations, and surrounding agricultural land to examine how eucalyptus plantations in Ethiopian Orthodox church communitiesmight impact soil quality relative to alternative land uses. Soil properties, including organic matter, pH, total nitrogen, and total phosphorus were measured in samples across 20 church forest sites in South Gondar, East Gojjam, West Gojjam, Awi, and Bahir Dar Liyu zones in the Amhara Region of the northern Ethiopian Highlands. Findings indicate that although soil in

A Newly Identified Passive Hyperaccumulator Eucalyptus grandis × E. urophylla under Manganese Stress.

Science.gov (United States)

Xie, Qingqing; Li, Zhenji; Yang, Limin; Lv, Jing; Jobe, Timothy O; Wang, Qiuquan

2015-01-01

Manganese (Mn) is an essential micronutrient needed for plant growth and development, but can be toxic to plants in excess amounts. However, some plant species have detoxification mechanisms that allow them to accumulate Mn to levels that are normally toxic, a phenomenon known as hyperaccumulation. These species are excellent candidates for developing a cost-effective remediation strategy for Mn-polluted soils. In this study, we identified a new passive Mn-hyperaccumulator Eucalyptus grandis × E. urophylla during a field survey in southern China in July 2010. This hybrid can accumulate as much as 13,549 mg/kg DW Mn in its leaves. Our results from Scanning Electron Microscope (SEM) X-ray microanalysis indicate that Mn is distributed in the entire leaf and stem cross-section, especially in photosynthetic palisade, spongy mesophyll tissue, and stem xylem vessels. Results from size-exclusion chromatography coupled with ICP-MS (Inductively coupled plasma mass spectrometry) lead us to speculate that Mn associates with relatively high molecular weight proteins and low molecular weight organic acids, including tartaric acid, to avoid Mn toxicity. Our results provide experimental evidence that both proteins and organic acids play important roles in Mn detoxification in Eucalyptus grandis × E. urophylla. The key characteristics of Eucalyptus grandis × E. urophylla are an increased Mn translocation facilitated by transpiration through the xylem to the leaves and further distribution throughout the leaf tissues. Moreover, the Mn-speciation profile obtained for the first time in different cellular organelles of Eucalyptus grandis × E. urophylla suggested that different organelles have differential accumulating abilities and unique mechanisms for Mn-detoxification.

Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags

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Christian M. Tobias

2008-11-01

Full Text Available The development of genomic resources for switchgrass ( L., a perennial NAD-malic enzyme type C grass, is required to enable molecular breeding and biotechnological approaches for improving its value as a forage and bioenergy crop. Expressed sequence tag (EST sequencing is one method that can quickly sample gene inventories and produce data suitable for marker development or analysis of tissue-specific patterns of expression. Toward this goal, three cDNA libraries from callus, crown, and seedling tissues of ‘Kanlow’ switchgrass were end-sequenced to generate a total of 61,585 high-quality ESTs from 36,565 separate clones. Seventy-three percent of the assembled consensus sequences could be aligned with the sorghum [ (L. Moench] genome at a -value of <1 × 10, indicating a high degree of similarity. Sixty-five percent of the ESTs matched with gene ontology molecular terms, and 3.3% of the sequences were matched with genes that play potential roles in cell-wall biogenesis. The representation in the three libraries of gene families known to be associated with C photosynthesis, cellulose and β-glucan synthesis, phenylpropanoid biosynthesis, and peroxidase activity indicated likely roles for individual family members. Pairwise comparisons of synonymous codon substitutions were used to assess genome sequence diversity and indicated an overall similarity between the two genome copies present in the tetraploid. Identification of EST–simple sequence repeat markers and amplification on two individual parents of a mapping population yielded an average of 2.18 amplicons per individual, and 35% of the markers produced fragment length polymorphisms.

Eucalyptus pollen allergy and asthma in children: a cross-sectional study in South-East Queensland, Australia.

Science.gov (United States)

Gibbs, Jane E M

2015-01-01

To investigate Eucalyptus (gum tree) pollen allergy in children in relation to geography, particularly vegetation, and its relationship to asthma. Males (n = 180) and females (n = 200) aged 9 to 14 participated. Some were healthy (asymptomatic), some had asthma, and some had other symptoms associated with atopy. School students were from three urban coastal schools and one school from a nearby semi-rural elevated area (range) near Brisbane, Australia. Coastal and range locations featured different distributions of Myrtaceae family vegetation (including Eucalyptus, Melaleuca, Leptospermum species). Skin prick test (SPT) responses to 15 commercial allergens were compared. As well, responses from coast versus range groups, and 'asthma' (n = 97) versus 'healthy' status (n = 107) groups, were compared. SPT responses (≥3mm wheal diameter) indicate that children with asthma are 31.1 times more likely to be allergic to Eucalyptus pollen extract (OR: 31.1; 95%CI 4.1- 235.7) compared to healthy children. Dust mite (p = .018), Eucalyptus (p = .046) and cockroach (p = .047) allergen SPT responses (wheals ≥3mm) were significantly greater in participants located on the coast versus range as determined by Fisher's Exact Test (α .05). For each location, percentage of positive responses (wheals ≥3mm) was greatest for 'dust mite' (30.9%-46%), 'cockroach' (18.1% -35%) and 'Bermuda grass' (10.6%-19.4%). The results support the hypothesis that proximity to Myrtaceae vegetation is related to positive SPT response and that Eucalyptus is an important allergen for children with asthma. Substantial response to olive allergen, in the absence of olive trees, suggests that the response may be driven by substances in other plants, perhaps Melaleuca quinquenervia, which abounds in coastal areas. Response to Eucalyptus allergen indicates that changes in gardening practice in schools and public areas may be appropriate. The findings pose validity questions regarding the use of some

Eucalyptus pollen allergy and asthma in children: a cross-sectional study in South-East Queensland, Australia.

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Jane E M Gibbs

Full Text Available To investigate Eucalyptus (gum tree pollen allergy in children in relation to geography, particularly vegetation, and its relationship to asthma.Males (n = 180 and females (n = 200 aged 9 to 14 participated. Some were healthy (asymptomatic, some had asthma, and some had other symptoms associated with atopy. School students were from three urban coastal schools and one school from a nearby semi-rural elevated area (range near Brisbane, Australia. Coastal and range locations featured different distributions of Myrtaceae family vegetation (including Eucalyptus, Melaleuca, Leptospermum species. Skin prick test (SPT responses to 15 commercial allergens were compared. As well, responses from coast versus range groups, and 'asthma' (n = 97 versus 'healthy' status (n = 107 groups, were compared.SPT responses (≥3mm wheal diameter indicate that children with asthma are 31.1 times more likely to be allergic to Eucalyptus pollen extract (OR: 31.1; 95%CI 4.1- 235.7 compared to healthy children. Dust mite (p = .018, Eucalyptus (p = .046 and cockroach (p = .047 allergen SPT responses (wheals ≥3mm were significantly greater in participants located on the coast versus range as determined by Fisher's Exact Test (α .05. For each location, percentage of positive responses (wheals ≥3mm was greatest for 'dust mite' (30.9%-46%, 'cockroach' (18.1% -35% and 'Bermuda grass' (10.6%-19.4%.The results support the hypothesis that proximity to Myrtaceae vegetation is related to positive SPT response and that Eucalyptus is an important allergen for children with asthma. Substantial response to olive allergen, in the absence of olive trees, suggests that the response may be driven by substances in other plants, perhaps Melaleuca quinquenervia, which abounds in coastal areas.Response to Eucalyptus allergen indicates that changes in gardening practice in schools and public areas may be appropriate. The findings pose validity questions regarding the use of some commercial

Impact of Eucalyptus plantations on the avian breeding community ...

African Journals Online (AJOL)

The nesting bird species in natural forests and Eucalyptus plantations on the Amani Plateau, East Usambara, were studied during the breeding season of September 2003 to March 2004. Some forest birds — like barbets, batis, broadbills, doves, flycatchers, greenbuls, hornbills, and tinkerbirds — utilised similar nest sites ...

Eucalyptus plantlet growth in relation to foliar application with ...

African Journals Online (AJOL)

In one experiment at greenhouse, condition was established to determine the effects of complete fertilizers on growth of plantlet Eucalyptus camaldulensis in Southeast of Iran. This experiment was conducted in the Agricultural Research Center, University of Zabol, in autumn year of 2008. This study was designed as a ...

Soil carbon estimation from eucalyptus grandis using canopy spectra

African Journals Online (AJOL)

Mapping soil fertility parameters, such as soil carbon (C), is fundamentally important for forest management and research related to forest growth and climate change. This study seeks to establish the link between Eucalyptus grandis canopy spectra and soil carbon using raw and continuum-removed spectra. Canopy-level ...

The conservation and breeding of Eucalyptus urophylla : a case ...

African Journals Online (AJOL)

Eucalyptus urophylla is one of the most commercially important forest species in the world, primarily as a hybrid parent. However, the conservation status of the majority of the populations where it naturally occurs on seven islands in eastern Indonesia range from critically endangered to vulnerable. We examine the ...

Relação entre concentrações foliares de carboidratos solúveis totais e tolerância ao frio em diferentes espécies de Eucalyptus spp.

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Mireli Moura Pitz Floriani

2013-03-01

Full Text Available http://dx.doi.org/10.5902/198050988450O objetivo deste trabalho foi avaliar o efeito da rustificação sobre a tolerância ao frio em Eucalyptus dunnii Maiden, Eucalyptus benthamii Maiden & Cambage, Eucalyptus grandis W. Hill ex Maiden e Eucalyptus saligna Sm., através da quantificação dos teores foliares de carboidratos solúveis totais e de prolina. Mudas das quatro espécies (com três meses de idade e cerca de 50 cm de altura foram submetidas a dois períodos de rustificação (0 e 21 dias de exposição a temperaturas diurnas de 5 ºC e noturnas de 1 ºC, com fotoperíodo controlado de 12 horas. Ao final de cada período de rustificação, as mudas foram submetidas durante 3 horas a três gradientes de temperatura abaixo de zero (-2 ºC, -5 ºC e -8 ºC. Foram feitas avaliações das concentrações foliares de carboidratos solúveis totais e de prolina, da temperatura letal de 50 % (TL50 e do índice de dano ao frio. Não foi identificada a presença de prolina nos tecidos foliares das espécies avaliadas. No entanto, em mudas não rustificadas, observou-se diferenças entre as espécies quanto à concentração foliar de carboidratos, sendo maior em Eucalyptus benthamii, intermediária em Eucalyptus dunnii e Eucalyptus grandis, e menor em Eucalyptus saligna. A rustificação causou um aumento na concentração foliar de carboidratos de 2,9; 2,5; 2,8 e 1,3 vezes em Eucalyptus dunnii, Eucalyptus benthamii, Eucalyptus saligna e Eucalyptus grandis, respectivamente. Em mudas que não foram submetidas à rustificação, a TL50 foi mais baixa em Eucalyptus benthamii, intermediária em Eucalyptus dunnii e Eucalyptus grandis, e mais alta em Eucalyptus saligna. No entanto, com a rustificação das plantas não houve diferenças entre as espécies quanto à TL50. Observou-se que a TL50 diminuiu com a rustificação, exceto no Eucalyptus benthamii. Houve correlação negativa entre a concentração foliar de carboidratos solúveis totais e a TL50

Eucalyptus and Water Use in South Africa

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Janine M. Albaugh

2013-01-01

Full Text Available The Eucalyptus genus yields high rates of productivity and can be grown across a wide range of site types and climates for products such as pulp, fuelwood, or construction lumber. In addition, many eucalypts have the ability to coppice, making this genus an ideal candidate for use as a biofuel feedstock. However, the water use of Eucalyptus is a controversial issue, and the impacts of these fast-growing trees on water resources are well documented. Regardless, the demand for wood products and water continues to rise, providing a challenge to increase the productivity of forest plantations within water constraints. This is of particular relevance for water-limited countries such as South Africa which relies on exotic plantations to meet its timber needs. Research results from water use studies in South Africa are well documented and legislation restrictions limit further afforestation. This paper outlines techniques used to quantify the water use of eucalypt plantations and provides recommendations on where to focus future research efforts. Greater insights into the water use efficiency of clonal material are needed, as certain eucalypt clones show fast growth and low water use. To better understand water use efficiency, estimates should be combined with monitoring of stand canopy structure and measurements of physiological processes.

EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species

OpenAIRE

Nascimento, Leandro Costa; Salazar, Marcela Mendes; Lepikson-Neto, Jorge; Camargo, Eduardo Leal Oliveira; Parreiras, Lucas Salera; Pereira, Gonçalo Amarante Guimarães; Carazzolle, Marcelo Falsarella

2017-01-01

Abstract Tree species of the genus Eucalyptus are the most valuable and widely planted hardwoods in the world. Given the economic importance of Eucalyptus trees, much effort has been made towards the generation of specimens with superior forestry properties that can deliver high-quality feedstocks, customized to the industrýs needs for both cellulosic (paper) and lignocellulosic biomass production. In line with these efforts, large sets of molecular data have been generated by several scienti...

Unravelling the bioherbicide potential of Eucalyptus globulus Labill: Biochemistry and effects of its aqueous extract

Science.gov (United States)

Reigosa, Manuel J.; Valentão, Patrícia; Andrade, Paula B.

2018-01-01

In the worldwide search for new strategies in sustainable weed management, the use of plant species able to produce and release phytotoxic compounds into the environment could be an effective alternative to synthetic herbicides. Eucalyptus globulus Labill. is known to be a source of biologically active compounds responsible for its phytotoxic and allelopathic properties. Our previous results demonstrated the bioherbicide potential of eucalyptus leaves incorporated into the soil as a green manure, probably through the release of phytotoxins into the soil solution. Thus, the aims of this study were to understand the phytotoxicity of the eucalyptus leaves aqueous extract applied in pre- and post-emergence, and to identify and quantify its potentially phytotoxic water-soluble compounds. The effects were tested on the germination and early growth of the model target species Lactuca sativa and Agrostis stolonifera, and on physiological parameters of L. sativa adult plants after watering or spraying application. Dose-response curves and ED50 and ED80 values for eucalyptus aqueous extracts revealed pre-emergence inhibitory effects on both target species, effects being comparable to the herbicide metolachlor. While spraying treatment reduced the aerial and root biomass and increased the dry weight/fresh weight ratio of lettuce adult plants, watering application reduced protein contents and chlorophyll concentrations with respect to control, reflecting different modes of action depending on the site of phytotoxin entry. Via HPLC analyses, a total of 8 phenolic compounds (chlorogenic, two ρ-coumaric derivatives, ellagic, hyperoside, rutin, quercitrin, and kaempferol 3-O-glucoside) and other 5 low weight organic acids (citric, malic, shikimic, succinic and fumaric acids) were obtained from aqueous extract, the latter being identified for the first time in E. globulus. Despite some phytotoxic effects were found on lettuce adult plants, the use of eucalyptus aqueous extract

Unravelling the bioherbicide potential of Eucalyptus globulus Labill: Biochemistry and effects of its aqueous extract.

Science.gov (United States)

Puig, Carolina G; Reigosa, Manuel J; Valentão, Patrícia; Andrade, Paula B; Pedrol, Nuria

2018-01-01

In the worldwide search for new strategies in sustainable weed management, the use of plant species able to produce and release phytotoxic compounds into the environment could be an effective alternative to synthetic herbicides. Eucalyptus globulus Labill. is known to be a source of biologically active compounds responsible for its phytotoxic and allelopathic properties. Our previous results demonstrated the bioherbicide potential of eucalyptus leaves incorporated into the soil as a green manure, probably through the release of phytotoxins into the soil solution. Thus, the aims of this study were to understand the phytotoxicity of the eucalyptus leaves aqueous extract applied in pre- and post-emergence, and to identify and quantify its potentially phytotoxic water-soluble compounds. The effects were tested on the germination and early growth of the model target species Lactuca sativa and Agrostis stolonifera, and on physiological parameters of L. sativa adult plants after watering or spraying application. Dose-response curves and ED50 and ED80 values for eucalyptus aqueous extracts revealed pre-emergence inhibitory effects on both target species, effects being comparable to the herbicide metolachlor. While spraying treatment reduced the aerial and root biomass and increased the dry weight/fresh weight ratio of lettuce adult plants, watering application reduced protein contents and chlorophyll concentrations with respect to control, reflecting different modes of action depending on the site of phytotoxin entry. Via HPLC analyses, a total of 8 phenolic compounds (chlorogenic, two ρ-coumaric derivatives, ellagic, hyperoside, rutin, quercitrin, and kaempferol 3-O-glucoside) and other 5 low weight organic acids (citric, malic, shikimic, succinic and fumaric acids) were obtained from aqueous extract, the latter being identified for the first time in E. globulus. Despite some phytotoxic effects were found on lettuce adult plants, the use of eucalyptus aqueous extract

assessment of acidity levels in eucalyptus camaldulensis barks from ...

African Journals Online (AJOL)

BARTH EKWUEME

Bark samples of Eucalyptus camaldulensis obtained from Bauchi and Gombe States were analysed spectrophotometrically for their sulphate-sulphur content. The aim was to assess the extent of sulphur pollution in the environment. The results showed that S concentration ranged from 0.79 to 1.70mg/g for samples from ...

Anti-inflammatory of both Eucalyptus spp. and Pistascia lentiscus ...

African Journals Online (AJOL)

Background: Eucalyptus spp. and Pistascia lentiscus are among the Palestinian trees that are traditionally used in folkloric medicine in treating many diseases; leaves of which are thought to have anti-inflammatory, antibacterial and antioxidant effects. The goal of this study is to evaluate the in vitro inhibitory effect of ...

Production of polyploids from cultured shoot tips of Eucalyptus ...

African Journals Online (AJOL)

Polyploids from cultured shoot tips of Eucalyptus globulus were produced by treatment with colchicine. Results showed that the combination of 0.5% colchicine and treating multiple shoot clumps for 4 days was the most appropriate conditions for E. globulus polyploidy induction and the effect of the use of multiple shoot ...

Nutritional sustainability of Eucalyptus plantations : a case study at ...

African Journals Online (AJOL)

The nutritional sustainability of a short-rotation Eucalyptus grandis plantation system was evaluated in a trial located at Karkloof, KwaZulu-Natal, South Africa, by determining nutrient pools and fluxes. Nutrient pools in the forest floor and biomass (above- and below-ground) were assessed by destructive sampling. The size ...

Development of Nested PCR, Multiplex PCR, and Loop-Mediated Isothermal Amplification Assays for Rapid Detection of Cylindrocladium scoparium on Eucalyptus

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Tian-Min Qiao

2016-10-01

Full Text Available Eucalyptus dieback disease, caused by Cylindrocladium scoparium, has occurred in last few years in large Eucalyptus planting areas in China and other countries. Rapid, simple, and reliable diagnostic techniques are desired for the early detection of Eucalyptus dieback of C. scoparium prior to formulation of efficient control plan. For this purpose, three PCR-based methods of nested PCR, multiplex PCR, loop-mediated isothermal amplification (LAMP were developed for detection of C. scoparium based on factor 1-alpha (tef1 and beta-tubulin gene in this study. All of the three methods showed highly specific to C. scoparium. The sensitivities of the nested PCR and LAMP were much higher than the multiplex PCR. The sensitivity of multiplex PCR was also higher than regular PCR. C. scoparium could be detected within 60 min from infected Eucalyptus plants by LAMP, while at least 2 h was needed by the rest two methods. Using different Eucalyptus tissues as samples for C. scoparium detection, all of the three PCR-based methods showed much better detection results than regular PCR. Base on the results from this study, we concluded that any of the three PCR-based methods could be used as diagnostic technology for the development of efficient strategies of Eucalyptus dieback disease control. Particularly, LAMP was the most practical method in field application because of its one-step and rapid reaction, simple operation, single-tube utilization, and simple visualization of amplification products.

Development of Nested PCR, Multiplex PCR, and Loop-Mediated Isothermal Amplification Assays for Rapid Detection of Cylindrocladium scoparium on Eucalyptus

Science.gov (United States)

Qiao, Tian-Min; Zhang, Jing; Li, Shu-Jiang; Han, Shan; Zhu, Tian-Hui

2016-01-01

Eucalyptus dieback disease, caused by Cylindrocladium scoparium, has occurred in last few years in large Eucalyptus planting areas in China and other countries. Rapid, simple, and reliable diagnostic techniques are desired for the early detection of Eucalyptus dieback of C. scoparium prior to formulation of efficient control plan. For this purpose, three PCR-based methods of nested PCR, multiplex PCR, loop-mediated isothermal amplification (LAMP) were developed for detection of C. scoparium based on factor 1-alpha (tef1) and beta-tubulin gene in this study. All of the three methods showed highly specific to C. scoparium. The sensitivities of the nested PCR and LAMP were much higher than the multiplex PCR. The sensitivity of multiplex PCR was also higher than regular PCR. C. scoparium could be detected within 60 min from infected Eucalyptus plants by LAMP, while at least 2 h was needed by the rest two methods. Using different Eucalyptus tissues as samples for C. scoparium detection, all of the three PCR-based methods showed much better detection results than regular PCR. Base on the results from this study, we concluded that any of the three PCR-based methods could be used as diagnostic technology for the development of efficient strategies of Eucalyptus dieback disease control. Particularly, LAMP was the most practical method in field application because of its one-step and rapid reaction, simple operation, single-tube utilization, and simple visualization of amplification products. PMID:27721691

Development of Nested PCR, Multiplex PCR, and Loop-Mediated Isothermal Amplification Assays for Rapid Detection of Cylindrocladium scoparium on Eucalyptus.

Science.gov (United States)

Qiao, Tian-Min; Zhang, Jing; Li, Shu-Jiang; Han, Shan; Zhu, Tian-Hui

2016-10-01

Eucalyptus dieback disease, caused by Cylindrocladium scoparium , has occurred in last few years in large Eucalyptus planting areas in China and other countries. Rapid, simple, and reliable diagnostic techniques are desired for the early detection of Eucalyptus dieback of C. scoparium prior to formulation of efficient control plan. For this purpose, three PCR-based methods of nested PCR, multiplex PCR, loop-mediated isothermal amplification (LAMP) were developed for detection of C. scoparium based on factor 1-alpha (tef1) and beta-tubulin gene in this study. All of the three methods showed highly specific to C. scoparium . The sensitivities of the nested PCR and LAMP were much higher than the multiplex PCR. The sensitivity of multiplex PCR was also higher than regular PCR. C. scoparium could be detected within 60 min from infected Eucalyptus plants by LAMP, while at least 2 h was needed by the rest two methods. Using different Eucalyptus tissues as samples for C. scoparium detection, all of the three PCR-based methods showed much better detection results than regular PCR. Base on the results from this study, we concluded that any of the three PCR-based methods could be used as diagnostic technology for the development of efficient strategies of Eucalyptus dieback disease control. Particularly, LAMP was the most practical method in field application because of its one-step and rapid reaction, simple operation, single-tube utilization, and simple visualization of amplification products.

An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries

Science.gov (United States)

Habermann, Bianca; Bebin, Anne-Gaelle; Herklotz, Stephan; Volkmer, Michael; Eckelt, Kay; Pehlke, Kerstin; Epperlein, Hans Henning; Schackert, Hans Konrad; Wiebe, Glenis; Tanaka, Elly M

2004-01-01

Background The ambystomatid salamander, Ambystoma mexicanum (axolotl), is an important model organism in evolutionary and regeneration research but relatively little sequence information has so far been available. This is a major limitation for molecular studies on caudate development, regeneration and evolution. To address this lack of sequence information we have generated an expressed sequence tag (EST) database for A. mexicanum. Results Two cDNA libraries, one made from stage 18-22 embryos and the other from day-6 regenerating tail blastemas, generated 17,352 sequences. From the sequenced ESTs, 6,377 contigs were assembled that probably represent 25% of the expressed genes in this organism. Sequence comparison revealed significant homology to entries in the NCBI non-redundant database. Further examination of this gene set revealed the presence of genes involved in important cell and developmental processes, including cell proliferation, cell differentiation and cell-cell communication. On the basis of these data, we have performed phylogenetic analysis of key cell-cycle regulators. Interestingly, while cell-cycle proteins such as the cyclin B family display expected evolutionary relationships, the cyclin-dependent kinase inhibitor 1 gene family shows an unusual evolutionary behavior among the amphibians. Conclusions Our analysis reveals the importance of a comprehensive sequence set from a representative of the Caudata and illustrates that the EST sequence database is a rich source of molecular, developmental and regeneration studies. To aid in data mining, the ESTs have been organized into an easily searchable database that is freely available online. PMID:15345051

Effect of freezing, hot tumble drying and washing with eucalyptus oil on house dust mites in soft toys.

Science.gov (United States)

Chang, Chin-Fu; Wu, Francis Fu-Sheng; Chen, Chi-Ying; Crane, Julian; Siebers, Rob

2011-09-01

Soft toys are a major source of house dust mites (HDM) and HDM allergens, and sleeping with soft toys is a significant risk factor for HDM sensitization. We studied three techniques to eliminate HDM from soft toys, namely freezing, hot tumble drying and washing with eucalyptus oil. Thirty-six toys (12 in each treatment group) were enumerated for live HDM by the heat escape method before and after freezing overnight, hot tumble drying for 1 h and washing in 0.2% to 0.4% eucalyptus oil. Freezing, hot tumble drying and washing with eucalyptus oil resulted in significant reductions in live HDM, an average reduction of 95.1%, 89.1% and 95.1%, respectively. Additionally, washing with eucalyptus oil resulted in a significant reduction in HDM allergens as well from a geometric mean of 9.12 μg/g to 0.37 μg/g (p = 0.033). These three HDM elimination techniques give parents of infants effective and acceptable methods of limiting HDM exposure. © 2011 John Wiley & Sons A/S.

Chemotyping of diverse Eucalyptus species grown in Egypt and antioxidant and antibacterial activities of its respective essential oils.

Science.gov (United States)

Salem, Mohamed Z M; Ashmawy, Nader A; Elansary, Hosam O; El-Settawy, Ahmed A

2015-01-01

The chemical composition of the essential oil from the leaves of Eucalyptus camaldulensis, Eucalyptus camaldulensis var. obtusa and Eucalyptus gomphocephala grown in northern Egypt was analysed by using GC-FID and GC-MS techniques. The antibacterial (agar disc diffusion and minimum inhibitory concentration methods) and antioxidant activities (2,2'-diphenypicrylhydrazyl) were examined. The main oils constituents were 1,8-cineole (21.75%), β-pinene (20.51%) and methyleugenol (6.10%) in E. camaldulensis; spathulenol (37.46%), p-cymene (17.20%) and crypton (8.88%) in E. gomphocephala; spathulenol (18.37%), p-cymene (19.38%) and crypton (16.91%) in E. camaldulensis var. obtusa. The essential oils from the leaves of Eucalyptus spp. exhibited considerable antibacterial activity against Gram-positive and Gram-negative bacteria. The values of total antioxidant activity were 70 ± 3.13%, 50 ± 3.34% and 84 ± 4.64% for E. camaldulensis, E. camaldulensis var. obtusa and E. gomphocephala, respectively. The highest antioxidant activity value of 84 ± 4.64% could be attributed to the high amount of spathulenol (37.46%).

A Newly Identified Passive Hyperaccumulator Eucalyptus grandis × E. urophylla under Manganese Stress.

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Qingqing Xie

Full Text Available Manganese (Mn is an essential micronutrient needed for plant growth and development, but can be toxic to plants in excess amounts. However, some plant species have detoxification mechanisms that allow them to accumulate Mn to levels that are normally toxic, a phenomenon known as hyperaccumulation. These species are excellent candidates for developing a cost-effective remediation strategy for Mn-polluted soils. In this study, we identified a new passive Mn-hyperaccumulator Eucalyptus grandis × E. urophylla during a field survey in southern China in July 2010. This hybrid can accumulate as much as 13,549 mg/kg DW Mn in its leaves. Our results from Scanning Electron Microscope (SEM X-ray microanalysis indicate that Mn is distributed in the entire leaf and stem cross-section, especially in photosynthetic palisade, spongy mesophyll tissue, and stem xylem vessels. Results from size-exclusion chromatography coupled with ICP-MS (Inductively coupled plasma mass spectrometry lead us to speculate that Mn associates with relatively high molecular weight proteins and low molecular weight organic acids, including tartaric acid, to avoid Mn toxicity. Our results provide experimental evidence that both proteins and organic acids play important roles in Mn detoxification in Eucalyptus grandis × E. urophylla. The key characteristics of Eucalyptus grandis × E. urophylla are an increased Mn translocation facilitated by transpiration through the xylem to the leaves and further distribution throughout the leaf tissues. Moreover, the Mn-speciation profile obtained for the first time in different cellular organelles of Eucalyptus grandis × E. urophylla suggested that different organelles have differential accumulating abilities and unique mechanisms for Mn-detoxification.

Ongoing molecular studies of Eucalyptus powdery mildew in Brazil

Science.gov (United States)

N. R. Fonseca; L. M. S. Guimaraes; R. P. Pires; Ned Klopfenstein; M. -S. Kim; A. C. Alfenas

2016-01-01

Powdery mildew diseases are caused by biotrophic fungi in the Erysiphales. These fungal pathogens are easily observed by the whitish powdery appearance caused by their colonization of the aerial surfaces on living plants (Stadnik & Rivera, 2001) (Figure 1). In Brazil, powdery mildew of Eucalyptus spp is increasing under the current nursery production...

Sub-Acute Hepatoxicity of Aqueous Leaf Extract of Eucalyptus ...

African Journals Online (AJOL)

Sub–acute toxicity study of the aqueous leaf extract of Eucalyptus camaldulensis was carried out on albino rats. Doses of 250mg, 500mg, 750mg and 1000mg per kilogram body weight of the extract were administered orally for 21 days. The activities of Alanine Aminotransferase (ALT), Aspartate Aminotransferase (AST), ...

Population Dynamics of Lepidoptera Pests in Eucalyptus urophylla Plantations in the Brazilian Amazonia

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José Cola Zanuncio

2014-01-01

Full Text Available Forestry companies study the population dynamics of insect pests in Integrated Pest Management for cost effectiveness. The objective of this study was to obtain qualitative and quantitative information on population fluctuation of the Lepidopteran defoliators of Eucalyptus urophylla plants in the Brazilian Amazon rainforest. In all, 402 species were collected, of which 10 were primary pests, nine were secondary pests, and the remaining bore no definite relevance to eucalyptus. Primary pests formed a low percentage of the total species, although they recorded a high percentage of the total number of individuals. The abundance of secondary pests, except in Caracuru, was less than 150 specimens annually. Primary pests showed higher population peaks during periods of low precipitation. The small number of species and the high abundance of primary and secondary pests could be due to the availability of food, or a deficiency in natural biological control. This suggests the possibilities of population outbreaks in the eucalyptus plantations. The period of highest occurrence for insect species in these crops must be identified so that suitable strategies can be developed for Integrated Pest Management.

Effects of Continuous Steam Explosion on the Microstructure and Properties of Eucalyptus Fibers

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Pengtao Ma

2015-12-01

Full Text Available Laboratory-designed continuous steam explosion (CSE equipment was used to prepare continuous steam-exploded eucalyptus fibers (CSEEFs. The pretreatment intensity was varied by changing treatment time, and effects of CSE on the composition, microstructure, surface composition, thermal properties, and crystallinity of CSEEFs were investigated. Composition analysis showed that CSE had a significant impact on lignin and hemicellulose, but little on cellulose. Scanning electron microscopy indicated that the middle lamella, primary wall, and outer secondary wall were progressively stripped as the CSE time increased. X-ray photoelectron spectroscopy demonstrated that concentrations of extractives and lignin were higher on the surface of eucalyptus wood than CSEEFs’, and the exposed carbohydrate fraction increased with increasing CSE time. Differential scanning calorimetry showed that eucalyptus wood has one glass transition (193.5 °C, whereas two glass transitions at 56.7 and 138.5 °C were observed for CSEEF-5. X-ray diffraction results suggested that crystallinity of samples decreased with increasing CSE time. Thermogravimetric analysis showed the pyrolysis peak temperature of samples first increased and then decreased slightly as CSE time increased. These data will be useful for the optimization and application of CSE technology.

P22 Arc repressor: enhanced expression of unstable mutants by addition of polar C-terminal sequences.

OpenAIRE

Milla, M. E.; Brown, B. M.; Sauer, R. T.

1993-01-01

Many mutant variants of the P22 Arc repressor are subject to intracellular proteolysis in Escherichia coli, which precludes their expression at levels sufficient for purification and subsequent biochemical characterization. Here we examine the effects of several different C-terminal extension sequences on the expression and activity of a set of Arc mutants. We show that two tail sequences, KNQHE (st5) and H6KNQHE (st11), increase the expression levels of most mutants from 10- to 20-fold and, ...

Energy rating and productive of wood from reforestation of Eucalyptus and Pinus genetically improved in the state of Sao Paulo

International Nuclear Information System (INIS)

Jammal Filho, Fawaz Ali; Bruder, Edson Marcelo; Rezende, Marcos Antonio de

2010-01-01

Full text: In recent years, wood consumption is increasing, and the need to increase the availability of commercial wood reforestation becomes essentially important. In the state of Sao Paulo a few species of Eucalyptus and Pinus have stood out for having high productivity and with updated technical genetic improvements to productivity can be increased to 60 %. The work has to evaluate the productivity and quality of wood provided with commercial reforestation species of Eucalyptus and Pinus genetically improved in the midwestern region of Sao Paulo. In this study we used six treatments: a seminal Eucalyptus grandis; two clones of Eucalyptus grandis, three hybrid clones of Eucalyptus urophylla x Eucalyptus grandis. Pinus were analyzed for five hybrid progenies of Pinus caribaea var. hondurensis and Pinus tecunumanii. We evaluated the productivity rates of each treatment and the quality of wood produced, by studying their average density and specific variations possible by the methods: TARG (Technique attenuation of gamma radiation from 241 Am) and immersion. Productivity mass IMAM treatments for Eucalyptus S1, C1, C2, H1, H2 and H3 were 18.7, 17.0, 21.2, 28.1, 30.1 and 27.2 ton/ha.years respectively, and the density point to 12 % treatments S1, C1, C2, H1, H2 and H3 were 451.3, 439.0, 411.9, 518.8, 526.4 and 526.3 kg/m 3 . Productivity for Pinus mass IMAM treatments H1, H2, H3, H4, H5 and S1 were 14.7, 13.5, 13.7, 14.8, 12.4 and 13.0 ton/ha.years respectively, and the density point to 12 % treatments H1, H2, H3, H4, H5 and S1 were 475, 522, 459, 478, 430 and 514 kg/m 3 . These results are extremely important and come to contradict some literature results that correlate productivity gains with losses in density. It was concluded that the values of density and productivity of each treatment and sperm Pinus hybrids there was significant improvement in the indices assessed. While in the Eucalyptus the results were remarkable, reflecting the improvement in productivity

Avaliação do teor de umidade da madeira de Eucalyptus grandis por medidores elétricos resistivos. Evaluation of the Eucalyptus grandis lumber moisture content by resistancetype moisture meters.

Directory of Open Access Journals (Sweden)

João Eduardo Guarnetti dos SANTOS

2006-01-01

Full Text Available O presente estudo teve como objetivoverificar a precisão de dois tipos de medidoreselétricos de teor de umidade durante o processo desecagem da madeira de Eucalyptus grandis. Foramretiradas amostras representativas de 14 tábuas deEucalyptus grandis e secas em estufa elétrica a40 ºC de temperatura, até que o material atingisse10% de umidade. Durante a secagem foramdeterminados, periodicamente, o teor de umidadeatravés do método de massas correntes e deverificações simultâneas com um medidor elétricoportátil (EMM e com o sistema de controle de umsecador convencional (KCS. Os resultados mostraramque: (1 o sensor de umidade KCS pode substituiro método gravimétrico durante a secagem damadeira; (2 o medidor do teor de umidade EMMsubestima os reais teores de umidade durante asecagem da madeira e não é indicado parasubstituir o método gravimétrico de determinação de umidade.The aim of the study was to evaluate theprecision of two types of electric moisture metersduring the drying process of Eucalyptus grandisboards. Samples were obtained from 14 boards ofEucalyptus grandis and they were dried in electriclaboratory oven at 40 ºC of temperature, until thewood achieve 10% of moisture content. During thedrying, the moisture content was determined bygravimetric method and simultaneous checks by anelectric moisture meter (EMM and by kilncontrol system (KCS. The results showed that:(1 the KCS can replace the gravimetric methodduring the wood drying; (2 the EMMunderestimate the real moisture content during thedrying of boards and it is not indicate as substituteof the gravimetric method.

Statistical sampling and modelling for cork oak and eucalyptus stands

NARCIS (Netherlands)

Paulo, M.J.

2002-01-01

This thesis focuses on the use of modern statistical methods to solve problems on sampling, optimal cutting time and agricultural modelling in Portuguese cork oak and eucalyptus stands. The results are contained in five chapters that have been submitted for publication

Aggregate Stability of Tropical Soils Under Long-Term Eucalyptus Cultivation

Science.gov (United States)

Eucalyptus cultivation has increased in all Brazilian regions. Despite the large amount of cultivated area, little is known about how this kind of management system affects soil properties, mainly the aggregate stability. Aggregate stability analyses have proved to be a sensitive tool to measure soi...

Expressed sequence tag-derived microsatellite markers of perennial ryegrass (Lolium perenne L.)

DEFF Research Database (Denmark)

Studer, Bruno; Asp, Torben; Frei, Ursula

2008-01-01

An expressed sequence tag (EST) library of the key grassland species perennial ryegrass (Lolium perenne L.) has been exploited as a resource for microsatellite marker development. Out of 955 simple sequence repeat (SSR) containing ESTs, 744 were used for primer design. Primer amplification was te...

Patterns of Reproductive Isolation in Eucalyptus-A Phylogenetic Perspective.

Science.gov (United States)

Larcombe, Matthew J; Holland, Barbara; Steane, Dorothy A; Jones, Rebecca C; Nicolle, Dean; Vaillancourt, René E; Potts, Brad M

2015-07-01

We assess phylogenetic patterns of hybridization in the speciose, ecologically and economically important genus Eucalyptus, in order to better understand the evolution of reproductive isolation. Eucalyptus globulus pollen was applied to 99 eucalypt species, mainly from the large commercially important subgenus, Symphyomyrtus. In the 64 species that produce seeds, hybrid compatibility was assessed at two stages, hybrid-production (at approximately 1 month) and hybrid-survival (at 9 months), and compared with phylogenies based on 8,350 genome-wide DArT (diversity arrays technology) markers. Model fitting was used to assess the relationship between compatibility and genetic distance, and whether or not the strength of incompatibility "snowballs" with divergence. There was a decline in compatibility with increasing genetic distance between species. Hybridization was common within two closely related clades (one including E. globulus), but rare between E. globulus and species in two phylogenetically distant clades. Of three alternative models tested (linear, slowdown, and snowball), we found consistent support for a snowball model, indicating that the strength of incompatibility accelerates relative to genetic distance. Although we can only speculate about the genetic basis of this pattern, it is consistent with a Dobzhansky-Muller-model prediction that incompatibilities should snowball with divergence due to negative epistasis. Different rates of compatibility decline in the hybrid-production and hybrid-survival measures suggest that early-acting postmating barriers developed first and are stronger than later-acting barriers. We estimated that complete reproductive isolation can take up to 21-31 My in Eucalyptus. Practical implications for hybrid eucalypt breeding and genetic risk assessment in Australia are discussed. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For

Potential use of eucalyptus biodiesel in compressed ignition engine

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Puneet Verma

2016-03-01

Full Text Available The increased population has resulted in extra use of conventional sources of fuels due to which there is risk of extinction of fossil fuels’ resources especially petroleum diesel. Biodiesel is emerging as an excellent alternative choice across the world as a direct replacement for diesel fuel in vehicle engines. Biodiesel offers a great choice. It is mainly derived from vegetable oils, animal fats and algae. Hence in this paper effort has been made to find out feasibility of biodiesel obtained from eucalyptus oil and its impact on diesel engine. Higher viscosity is a major issue while using vegetable oil directly in engine which can be removed by converting it into biodiesel by the process of transesterification. Various fuel properties like calorific value, flash point and cetane value of biodiesel and biodiesel–diesel blends of different proportions were evaluated and found to be comparable with petroleum diesel. The result of investigation shows that Brake Specific Fuel Consumption (BSFC for two different samples of B10 blend of eucalyptus biodiesel is 2.34% and 2.93% lower than that for diesel. Brake Thermal Efficiency (BTE for B10 blends was found to be 0.52% and 0.94% lower than that for diesel. Emission characteristics show that Smoke Opacity improves for both samples, smoke is found to be 64.5% and 62.5% cleaner than that of diesel. Out of all blends B10 was found to be a suitable alternative to conventional diesel fuel to control air pollution without much significant effect on engine performance. On comparing both samples, biodiesel prepared from sample A of eucalyptus oil was found to be superior in all aspects of performance and emission.

ECONOMIC ROTATION OF Eucalyptus grandis PLANTATIONS FOR PULP PRODUCTION

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Thais Cunha Ferreira

2004-07-01

Full Text Available The objectives of the research were: to determine the economic impact of several minimum diameter and length of logs in economic rotation age, economic feasibility of Eucalyptus grandis plantation for cellulose production; to determine the economic loss of cutting the stand before or after the optimal economic rotation age. A biometric model for making wood volume prognosis was developed using data of a trial of Eucalyptus grandis plantation envisaging pulp production. Eucalyptus grandis stands of 19 and 103 months old, in the spacing 3 x 2 and 3 x 3 m in site index of 30; 28; 26 and 24 m were used. Theprognosis started at the age zero, considering logs of 2.5; 2.8; 4.0 and 6.0 m of length for minimum diameter varying from 4 to 10 cm, in intervals of 2 cm. Net Present Worth (VPL was used the economic criterion, considering an infinite horizon and a cost relation including reestablishment, yearly maintenance, logging and wood transportation costs. The main conclusions were: increases in the minimum diameter and or in logs length increase the rotation age; harvesting the stands in ages different from the optimal one cause large economic loss mainly in the better sites; the economic loss is larger if the harvest is made before the optimal economic rotation than if it is make after; economic feasibility increases when the minimum diameter is smaller and when the length of the logs is shorter. Any way, before making any decision it is necessary to take into account possible technical restrictions and effect on harvest and transportation costs caused by changer in the length of logs and in the size of the minimum commercial diameter.

Responses of Eucalyptus species to fertilizer applications made at ...

African Journals Online (AJOL)

Early research trials in South Africa have shown that Eucalyptus species generally respond positively to the addition of nutrients at planting. However, as most of these research trials were located in KwaZulu-Natal, it was important to investigate the nature of the response in other afforested regions of the country where this ...

Primeiro registro de Fulgurodes sartinaria (Lepidoptera: Geometridae em plantas de Eucalyptus cloeziana (Myrtaceae (Nota Científica. First record of Fulgurodes sartinaria (Lepidoptera: geometridae in Eucalyptus cloeziana (Myrtaceae (Scientific Note.

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Claubert Wagner Guimarães de MENEZES

2013-03-01

Full Text Available O objetivo deste trabalho foi registrar a oviposição e o desenvolvimento de uma nova espécie de lepidóptera associada à Eucalyptus cloeziana F. Muell, 1878 (Myrtaceae. Ovos, imaturos e adultos de Fulgurodes sartinaria Guenée, 1858 (Lepidoptera: Geometridae foram encontrados em plantas de E. cloeziana no município de Itamarandiba, Minas Gerais, Brasil. Este trabalho é o primeiro registro desse desfolhador em plantas de eucalipto. Ninfas de Brontocoris tabidus Signoret, 1852 (Heteroptera: Pentatomidae foram também observadas predando as lagartas de F. sartinaria, isto indica que este predador poderá ser um potencial agente de controle biológico da espécie. A ocorrência de F. sartinaria ovipositando e se desenvolvendo em plantas de E. cloeziana mostra que este lepidóptero pode se tornar um desfolhador importante da espécie, sendo recomendável sua inclusão em monitoramentos de pragas do eucalipto visando seu manejo integrado.The aim of this study was to record the oviposition and development of a new species of lepidopteran pests of Eucalyptus cloeziana F. Muell, 1878 (Myrtaceae. Eggs, immatures and adults of Fulgurodes sartinaria Guenée, 1858 (Lepidoptera: Geometridae were found in plants of E. cloeziana in Itamarandiba, Minas Gerais state, Brazil. This work is the first record of this defoliator in eucalyptus plants. Nymphs of the Brontocoris tabidus Signoret, 1852 (Heteroptera: Pentatomidae have also been observed preying on the larvae of F. sartinaria, this indicates that this predator is a probable potential biological control agent of the species. The occurrence of F. sartinaria developing and laying eggs on plants of E. cloeziana shows that this insect can become an important defoliator and it is recommended its inclusion in monitoring pest of eucalyptus for integrated pest management.

Inhibition of hepatitis B virus replication with linear DNA sequences expressing antiviral micro-RNA shuttles

Energy Technology Data Exchange (ETDEWEB)

Chattopadhyay, Saket; Ely, Abdullah; Bloom, Kristie; Weinberg, Marc S. [Antiviral Gene Therapy Research Unit, University of the Witwatersrand (South Africa); Arbuthnot, Patrick, E-mail: Patrick.Arbuthnot@wits.ac.za [Antiviral Gene Therapy Research Unit, University of the Witwatersrand (South Africa)

2009-11-20

RNA interference (RNAi) may be harnessed to inhibit viral gene expression and this approach is being developed to counter chronic infection with hepatitis B virus (HBV). Compared to synthetic RNAi activators, DNA expression cassettes that generate silencing sequences have advantages of sustained efficacy and ease of propagation in plasmid DNA (pDNA). However, the large size of pDNAs and inclusion of sequences conferring antibiotic resistance and immunostimulation limit delivery efficiency and safety. To develop use of alternative DNA templates that may be applied for therapeutic gene silencing, we assessed the usefulness of PCR-generated linear expression cassettes that produce anti-HBV micro-RNA (miR) shuttles. We found that silencing of HBV markers of replication was efficient (>75%) in cell culture and in vivo. miR shuttles were processed to form anti-HBV guide strands and there was no evidence of induction of the interferon response. Modification of terminal sequences to include flanking human adenoviral type-5 inverted terminal repeats was easily achieved and did not compromise silencing efficacy. These linear DNA sequences should have utility in the development of gene silencing applications where modifications of terminal elements with elimination of potentially harmful and non-essential sequences are required.

Inhibition of hepatitis B virus replication with linear DNA sequences expressing antiviral micro-RNA shuttles

International Nuclear Information System (INIS)

Chattopadhyay, Saket; Ely, Abdullah; Bloom, Kristie; Weinberg, Marc S.; Arbuthnot, Patrick

2009-01-01

RNA interference (RNAi) may be harnessed to inhibit viral gene expression and this approach is being developed to counter chronic infection with hepatitis B virus (HBV). Compared to synthetic RNAi activators, DNA expression cassettes that generate silencing sequences have advantages of sustained efficacy and ease of propagation in plasmid DNA (pDNA). However, the large size of pDNAs and inclusion of sequences conferring antibiotic resistance and immunostimulation limit delivery efficiency and safety. To develop use of alternative DNA templates that may be applied for therapeutic gene silencing, we assessed the usefulness of PCR-generated linear expression cassettes that produce anti-HBV micro-RNA (miR) shuttles. We found that silencing of HBV markers of replication was efficient (>75%) in cell culture and in vivo. miR shuttles were processed to form anti-HBV guide strands and there was no evidence of induction of the interferon response. Modification of terminal sequences to include flanking human adenoviral type-5 inverted terminal repeats was easily achieved and did not compromise silencing efficacy. These linear DNA sequences should have utility in the development of gene silencing applications where modifications of terminal elements with elimination of potentially harmful and non-essential sequences are required.

Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda

Science.gov (United States)

Deng, Youping; Dong, Yinghua; Thodima, Venkata; Clem, Rollie J; Passarelli, A Lorena

2006-01-01

Background Little is known about the genome sequences of lepidopteran insects, although this group of insects has been studied extensively in the fields of endocrinology, development, immunity, and pathogen-host interactions. In addition, cell lines derived from Spodoptera frugiperda and other lepidopteran insects are routinely used for baculovirus foreign gene expression. This study reports the results of an expressed sequence tag (EST) sequencing project in cells from the lepidopteran insect S. frugiperda, the fall armyworm. Results We have constructed an EST database using two cDNA libraries from the S. frugiperda-derived cell line, SF-21. The database consists of 2,367 ESTs which were assembled into 244 contigs and 951 singlets for a total of 1,195 unique sequences. Conclusion S. frugiperda is an agriculturally important pest insect and genomic information will be instrumental for establishing initial transcriptional profiling and gene function studies, and for obtaining information about genes manipulated during infections by insect pathogens such as baculoviruses. PMID:17052344

An Automated Pipeline for Engineering Many-Enzyme Pathways: Computational Sequence Design, Pathway Expression-Flux Mapping, and Scalable Pathway Optimization.

Science.gov (United States)

Halper, Sean M; Cetnar, Daniel P; Salis, Howard M

2018-01-01

Engineering many-enzyme metabolic pathways suffers from the design curse of dimensionality. There are an astronomical number of synonymous DNA sequence choices, though relatively few will express an evolutionary robust, maximally productive pathway without metabolic bottlenecks. To solve this challenge, we have developed an integrated, automated computational-experimental pipeline that identifies a pathway's optimal DNA sequence without high-throughput screening or many cycles of design-build-test. The first step applies our Operon Calculator algorithm to design a host-specific evolutionary robust bacterial operon sequence with maximally tunable enzyme expression levels. The second step applies our RBS Library Calculator algorithm to systematically vary enzyme expression levels with the smallest-sized library. After characterizing a small number of constructed pathway variants, measurements are supplied to our Pathway Map Calculator algorithm, which then parameterizes a kinetic metabolic model that ultimately predicts the pathway's optimal enzyme expression levels and DNA sequences. Altogether, our algorithms provide the ability to efficiently map the pathway's sequence-expression-activity space and predict DNA sequences with desired metabolic fluxes. Here, we provide a step-by-step guide to applying the Pathway Optimization Pipeline on a desired multi-enzyme pathway in a bacterial host.

Molecular cloning, sequence characterization and expression pattern of Rab18 gene from watermelon (Citrullus lanatus).

Science.gov (United States)

Xinli, Xiao; Lei, Peng

2015-03-04

The complete mRNA sequence of watermelon Rab18 gene was amplified through the rapid amplification of cDNA ends (RACE) method. The full-length mRNA was 1010 bp containing a 645 bp open reading frame, which encodes a protein of 214 amino acids. Sequence analysis revealed that watermelon Rab18 protein shares high homology with the Rab18 of cucumber (99%), muskmelon (98%), Morus notabilis (90%), tomato (89%), wine grape (89%) and potato (88%). Phylogenetic analysis revealed that watermelon Rab18 gene has a closer genetic relationship with Rab18 gene of cucumber and muskmelon. Tissue expression profile analysis indicated that watermelon Rab18 gene was highly expressed in root, stem and leaf, moderately expressed in flower and weakly expressed in fruit.

Developing clones of Eucalyptus cloeziana resistant to rust (Puccinia psidii)

Science.gov (United States)

Rafael F. Alfenas; Marcelo M. Coutinho; Camila S. Freitas; Rodrigo G. Freitas; Acelino C. Alfenas

2012-01-01

Besides its high resistance to Chrysoporthe cubensis canker, Eucalyptus cloeziana F. Muell. is a highly valuable tree species for wood production. It can be used for furniture, electric poles, fence posts, and charcoal. Nevertheless, it is highly susceptible to the rust caused by Puccinia psidii, which...

27-36, 2014 27 Quality assessment of essential oils of Eucalyptus

African Journals Online (AJOL)

In the course of this study, essential oils of Eucalyptus globulus and three Boswellia rivae species were analyzed using ... parts of the plant, including leaves, flowers, seeds, rhizomes ..... oil and its major component 1,8-cineole against fungal.

Effect of Echinophora platyloba , Stachys lavandulifolia, and Eucalyptus camaldulensis plants on Trichomonas vaginalis growth in vitro

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Hossein Ali Youse

2012-01-01

Full Text Available Background: Trichomonas vaginalis is a protozoan parasite which causes vaginitis in women worldwide. Metronidazole with vast side effects is drug of choice for this infection. In search for an alternative drug, in this study the effect of three plants on Trichomonas vaginalis has been investigated in vitro. Materials and Methods: Alcoholic and watery extracts of Echinophora platyloba, Stachys lavandulifolia, and Eucalyptus camaldulensis were prepared. In TYIS culture medium containing alive Trichomonas vaginalis different concentrations of extracts of three plants were added. Following, 24, 48, and 72 h incubation the number of parasite in each test tube was counted. Results: Eucalyptus camaldulensis showed a strong effect on Trichomonas vaginalis growth. However, no significant effect was observed with Echinophora platyloba or Stachys lavandulifolia extracts. Conclusion: Eucalyptus camaldulensis can be considered as an alternative drug for treatment of infective vaginitis which is caused by bacteria, fungi and parasites.

Presence and Expression of Microbial Genes Regulating Soil Nitrogen Dynamics Along the Tanana River Successional Sequence

Science.gov (United States)

Boone, R. D.; Rogers, S. L.

2004-12-01

We report on work to assess the functional gene sequences for soil microbiota that control nitrogen cycle pathways along the successional sequence (willow, alder, poplar, white spruce, black spruce) on the Tanana River floodplain, Interior Alaska. Microbial DNA and mRNA were extracted from soils (0-10 cm depth) for amoA (ammonium monooxygenase), nifH (nitrogenase reductase), napA (nitrate reductase), and nirS and nirK (nitrite reductase) genes. Gene presence was determined by amplification of a conserved sequence of each gene employing sequence specific oligonucleotide primers and Polymerase Chain Reaction (PCR). Expression of the genes was measured via nested reverse transcriptase PCR amplification of the extracted mRNA. Amplified PCR products were visualized on agarose electrophoresis gels. All five successional stages show evidence for the presence and expression of microbial genes that regulate N fixation (free-living), nitrification, and nitrate reduction. We detected (1) nifH, napA, and nirK presence and amoA expression (mRNA production) for all five successional stages and (2) nirS and amoA presence and nifH, nirK, and napA expression for early successional stages (willow, alder, poplar). The results highlight that the existing body of previous process-level work has not sufficiently considered the microbial potential for a nitrate economy and free-living N fixation along the complete floodplain successional sequence.

Eucalyptus plantations and the steel industry in Amazonia - A contribution from the 3-PG model

International Nuclear Information System (INIS)

Behling, Maurel; Piketty, Marie Gabrielle; Morello, Thiago Fonseca; Bouillet, Jean-Pierre; Laclau, Jean-Paul; Mesquita Neto, Franscisco

2011-01-01

The Carajas steel industry sector in the Brazilian Amazon has aroused protest on environmental grounds because of its heavy reliance on charcoal. The charcoal is mainly produced from natural forest biomass, with direct and indirect impacts on deforestation and forest ecosystem degradation. Establishing eucalyptus plantations for fuel on degraded pastures could be a workable alternative. Few such plantations exist as yet, and because there are no validated assessments of their production potential, a study was conducted to provide consolidated estimations of the growth and productivity of the Carajas eucalyptus plantations. The estimations were obtained with the 3-PG model (Physiological Principles in Predicting Growth). The model parameters are based on growth data for the eucalyptus plantations established by a company in Breu Branco municipality in Brazil's Para State. Calibrating the model with local data proved to be far more effective than using the parameters set for eucalyptus plantations in other areas in Brazil, South Africa or Australia. The simulations made show that the current annual average growth rate, over a six-year period, of about 20 m"3 per hectare could increase to 30 m"3 with appropriate fertilisation and effective underbrush control. They also suggest that production could be higher without water deficit. Plantation zones shall be selected as a priority in areas where the dry season is the least severe around Carajas. These 3-PG model settings have made it a more effective management tool for industrial plantations in Amazonian conditions. (authors)

ESPRIT: A Method for Defining Soluble Expression Constructs in Poorly Understood Gene Sequences.

Science.gov (United States)

Mas, Philippe J; Hart, Darren J

2017-01-01

Production of soluble, purifiable domains or multi-domain fragments of proteins is a prerequisite for structural biology and other applications. When target sequences are poorly annotated, or when there are few similar sequences available for alignments, identification of domains can be problematic. A method called expression of soluble proteins by random incremental truncation (ESPRIT) addresses this problem by high-throughput automated screening of tens of thousands of enzymatically truncated gene fragments. Rare soluble constructs are identified by experimental screening, and the boundaries revealed by DNA sequencing.

Lack of association between allozyme heterozygosity and juvenile traits in Eucalyptus

Science.gov (United States)

Genetic variability for juvenile waits, which included basal diameter, height, biomass accumulation, and growth increment, was studied in eight provenances involving four species, Eucalyptus grandis, E. saligna, E. camaldulensis and E. urophylla, under uniform greenhouse conditions. The species diff...

Ecophysiological and foliar nitrogen concentration responses of understorey Acacia spp. and Eucalyptus sp. to prescribed burning.

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Ma, Ling; Rao, Xingquan; Lu, Ping; Bai, Shahla Hosseini; Xu, Zhihong; Chen, Xiaoyang; Blumfield, Timothy; Xie, Jun

2015-07-01

Eucalyptus spp. is a dominant tree genus in Australia and most Eucalyptus spp. are canopy dominant species. In Australian natural forests, Eucalyptus spp. commonly are associated with understorey legumes which play a crucial role for ecological restoration owing to their nitrogen (N) fixing ability for replenishing the soil N lost after frequent prescribed burning. This study aimed to explore to what extent physiological responses of these species differ 7 and 12 years after last fire. Two most common understorey Acacia spp., Acacia leiocalyx and A. disparrima, as well as one non-leguminous Eucalyptus resinifera, were studied due to their dominance in the forest. Both A. leiocalyx and A. disparrima showed higher carbon (C) assimilation capacity, maximum photosynthetic capacity, and moderate foliar C/N ratio compared with E. resinifera. A. leiocalyx showed various advantages compared to A. disparrima such as higher photosynthetic capacity, adaptation to wider light range and higher foliar total N (TNmass). A. leiocalyx also relied on N2-fixing ability for longer time compared to A. disparrima. The results suggested that the two Acacia spp. were more beneficial to C and N cycles for the post burning ecosystem than the non-N2-fixing species E. resinifera. A. leiocalyx had greater contribution to complementing soil N cycle long after burning compared to A. disparrima.

Mixed plantations of Eucalyptus and leguminous trees enhance biomass production

Science.gov (United States)

Dean S. DeBell; Craig D. Whitesell; Thomas H. Schubert

1985-01-01

Two Eucalyptus species-E. saligna Sm. and E. grandis Hill-are especially favored in Hawaii forwood, fiber, and fuel production because of their quick growth and high yields. Their growth is limited, however, on many sites by low levels of available nitrogen. Supplemental nitrogen can be provided by nitrogen-...

Physiological responses to glyphosate are dependent on Eucalyptus urograndis genotype

Science.gov (United States)

Two experiments were conducted to evaluate the response of Eucalyptus urograndis genotypes (C219 and GG100) to glyphosate in growth chambers. As glyphosate dose increased (18 up to 720 g ae ha-1), CO2 assimilation rate, transpiration rate, and stomatal conductance decreased fastest and strongest in ...

Experimental alternatives for evaluation of progenies and clones in eucalyptus breeding programs

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Souza Elaine Aparecida de

2003-01-01

Full Text Available The feasibility of using augmented block designs and spatial analysis methods for early stage selection in eucalyptus breeding programs was tested. A total of 113 half-sib progenies of Eucalyptus urophylla and eight clones were evaluated in an 11 x 11 triple lattice experiment at two locations: Posto da Mata (Bahia, Brazil and São Mateus (Minas Gerais, Brazil. Four checks were randomly allocated within each block. Plots consisted of 15 m long rows containing 6 plants spaced 3 m apart. The girth at breast height (cm/plant was evaluated at 19 and 26 months of age. Variance analyses were performed according to the following methods: lattice design, randomized complete block design, augmented block design, Papadakis method, moving means method, and check plots. Comparisons among different methods were based on the magnitude of experimental errors and precision of the estimates of genetic and phenotypic parameters. General results indicated that augmented block design is useful to evaluate progenies and clones in early selection in eucalyptus breeding programs using moderate and low selection intensities. However, this design is not suitable for estimating genetic and phenotypic parameters due to its low precision. Check plots, nearest neighbour, Papadakis (1937, and moving means methods were efficient in removing the heterogeneity within blocks. These efficiencies were compared to that in lattice analysis for estimation of genetic and phenotypic parameters.

Field performance of alternative landfill covers vegetated with cottonwood and eucalyptus trees.

Science.gov (United States)

Abichou, Tarek; Musagasa, Jubily; Yuan, Lei; Chanton, Jeff; Tawfiq, Kamal; Rockwood, Donald; Licht, Louis

2012-01-01

A field study was conducted to assess the ability of landfill covers to control percolation into the waste. Performance of one conventional cover was compared to that of two evapotranspiration (ET) tree covers, using large (7 x 14 m) lined lysimeters at the Leon County Solid Waste management facility in Tallahassee, Florida. Additional unlined test sections were also constructed and monitored in order to compare soil water storage, soil temperature, and tree growth inside lysimeters and in unlined test sections. The unlined test sections were in direct contact with landfill gas. Surface runoff on the ET covers was a small proportion of the water balance (1% of precipitation) as compared to 13% in the conventional cover. Percolation in the ET covers averaged 17% and 24% of precipitation as compared to 33% in the conventional cover. On average, soil water storage was higher in the lined lysimeters (429 mm) compared to unlined test sections (408 mm). The average soil temperature in the lysimeters was lower than in the unlined test sections. The average tree height inside the lysimeters was not significantly lower (8.04 mfor eucalyptus and 7.11 mfor cottonwood) than outside (8.82 m for eucalyptus and 8.01 m for cottonwood). ET tree covers vegetated with cottonwood or eucalyptus are feasible for North Florida climate as an alternative to GCL covers.

Sequence and expression analyses of porcine ISG15 and ISG43 genes.

Science.gov (United States)

Huang, Jiangnan; Zhao, Shuhong; Zhu, Mengjin; Wu, Zhenfang; Yu, Mei

2009-08-01

The coding sequences of porcine interferon-stimulated gene 15 (ISG15) and the interferon-stimulated gene (ISG43) were cloned from swine spleen mRNA. The amino acid sequences deduced from porcine ISG15 and ISG43 genes coding sequence shared 24-75% and 29-83% similarity with ISG15s and ISG43s from other vertebrates, respectively. Structural analyses revealed that porcine ISG15 comprises two ubiquitin homologues motifs (UBQ) domain and a conserved C-terminal LRLRGG conjugating motif. Porcine ISG43 contains an ubiquitin-processing proteases-like domain. Phylogenetic analyses showed that porcine ISG15 and ISG43 were mostly related to rat ISG15 and cattle ISG43, respectively. Using quantitative real-time PCR assay, significant increased expression levels of porcine ISG15 and ISG43 genes were detected in porcine kidney endothelial cells (PK15) cells treated with poly I:C. We also observed the enhanced mRNA expression of three members of dsRNA pattern-recognition receptors (PRR), TLR3, DDX58 and IFIH1, which have been reported to act as critical receptors in inducing the mRNA expression of ISG15 and ISG43 genes. However, we did not detect any induced mRNA expression of IFNalpha and IFNbeta, suggesting that transcriptional activations of ISG15 and ISG43 were mediated through IFN-independent signaling pathway in the poly I:C treated PK15 cells. Association analyses in a Landrace pig population revealed that ISG15 c.347T>C (BstUI) polymorphism and the ISG43 c.953T>G (BccI) polymorphism were significantly associated with hematological parameters and immune-related traits.

Establishment of Eucalyptus grandis W. Hill ex Maiden in vitro using ...

African Journals Online (AJOL)

Establishment of Eucalyptus grandis W. Hill ex Maiden in vitro using commercial products for seed treatment. Moacir Ribeiro Neto, Cíntia de Oliveira Martendal, Flávia Dionísio Pereira, Edson Luiz Souchie, Fabiano Guimarães Silva ...

Unravelling the bioherbicide potential of Eucalyptus globulus Labill: Biochemistry and effects of its aqueous extract.

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Carolina G Puig

Full Text Available In the worldwide search for new strategies in sustainable weed management, the use of plant species able to produce and release phytotoxic compounds into the environment could be an effective alternative to synthetic herbicides. Eucalyptus globulus Labill. is known to be a source of biologically active compounds responsible for its phytotoxic and allelopathic properties. Our previous results demonstrated the bioherbicide potential of eucalyptus leaves incorporated into the soil as a green manure, probably through the release of phytotoxins into the soil solution. Thus, the aims of this study were to understand the phytotoxicity of the eucalyptus leaves aqueous extract applied in pre- and post-emergence, and to identify and quantify its potentially phytotoxic water-soluble compounds. The effects were tested on the germination and early growth of the model target species Lactuca sativa and Agrostis stolonifera, and on physiological parameters of L. sativa adult plants after watering or spraying application. Dose-response curves and ED50 and ED80 values for eucalyptus aqueous extracts revealed pre-emergence inhibitory effects on both target species, effects being comparable to the herbicide metolachlor. While spraying treatment reduced the aerial and root biomass and increased the dry weight/fresh weight ratio of lettuce adult plants, watering application reduced protein contents and chlorophyll concentrations with respect to control, reflecting different modes of action depending on the site of phytotoxin entry. Via HPLC analyses, a total of 8 phenolic compounds (chlorogenic, two ρ-coumaric derivatives, ellagic, hyperoside, rutin, quercitrin, and kaempferol 3-O-glucoside and other 5 low weight organic acids (citric, malic, shikimic, succinic and fumaric acids were obtained from aqueous extract, the latter being identified for the first time in E. globulus. Despite some phytotoxic effects were found on lettuce adult plants, the use of eucalyptus

Tasa de descuento y rotación forestal: el caso del Eucalyptus Saligna

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Camilo Ernesto Restrepo Estrada

2010-12-01

Full Text Available Eucalyptus is one of the most important economical and environmental species in Colombia. The main goal of this article is to study the relationship between the discount rate and the year of Eucalyptus Saligna optimal harvest, through the Fisher and Hotelling’s method. The methodology consists of calculating the maximum Net Present Value and performing a sensitivity analysis between the year of harvest and the discount rate. The area of study is located in the eastern region of the state of Antioquia, where data was available. The results suggest that the optimal year of harvest has an inversely proportional relation with the discount rate, and it decreases for higher rates.

GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP

NARCIS (Netherlands)

Qin Ling,; Prins, P.; Jones, J.T.; Popeijus, H.; Smant, G.; Bakker, J.; Helder, J.

2001-01-01

The release of vast quantities of DNA sequence data by large-scale genome and expressed sequence tag (EST) projects underlines the necessity for the development of efficient and inexpensive ways to link sequence databases with temporal and spatial expression profiles. Here we demonstrate the power

Comparisons between Arabidopsis thaliana and Drosophila melanogaster in relation to Coding and Noncoding Sequence Length and Gene Expression

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Rachel Caldwell

2015-01-01

Full Text Available There is a continuing interest in the analysis of gene architecture and gene expression to determine the relationship that may exist. Advances in high-quality sequencing technologies and large-scale resource datasets have increased the understanding of relationships and cross-referencing of expression data to the large genome data. Although a negative correlation between expression level and gene (especially transcript length has been generally accepted, there have been some conflicting results arising from the literature concerning the impacts of different regions of genes, and the underlying reason is not well understood. The research aims to apply quantile regression techniques for statistical analysis of coding and noncoding sequence length and gene expression data in the plant, Arabidopsis thaliana, and fruit fly, Drosophila melanogaster, to determine if a relationship exists and if there is any variation or similarities between these species. The quantile regression analysis found that the coding sequence length and gene expression correlations varied, and similarities emerged for the noncoding sequence length (5′ and 3′ UTRs between animal and plant species. In conclusion, the information described in this study provides the basis for further exploration into gene regulation with regard to coding and noncoding sequence length.

[Sequences and expression pattern of mce gene in Leptospira interrogans of different serogroups].

Science.gov (United States)

Zhang, Lei; Xue, Feng; Yan, Jie; Mao, Ya-fei; Li, Li-wei

2008-11-01

To determine the frequency of mce gene in Leptospira interrogans, and to investigate the gene transcription levels of L. interrogans before and after infecting cells. The segments of entire mce genes from 13 L.interrogans strains and 1 L.biflexa strain were amplified by PCR and then sequenced after T-A cloning. A prokaryotic expression system of mce gene was constructed; the expression and output of the target recombinant protein rMce were examined by SDS-PAGE and Western Blot assay. Rabbits were intradermally immunized with rMce to prepare the antiserum, the titer of antiserum was measured by immunodiffusion test. The transcription levels of mce gene in L.interrogans serogroup Icterohaemorrhagiae serovar lai strain 56601 before and after infecting J774A.1 cells were monitored by real-time fluorescence quantitative RT-PCR. mce gene was carried in all tested L.interrogans strains, but not in L.biflexa serogroup Semaranga serovar patoc strain Patoc I. The similarities of nucleotide and putative amino acid sequences of the cloned mce genes to the reported sequences (GenBank accession No: NP712236) were 99.02%-100% and 97.91%-100%, respectively. The constructed prokaryotic expression system of mce gene expressed rMce and the output of rMce was about 5% of the total bacterial proteins. The antiserum against whole cell of L.interrogans strain 56601 efficiently recognized rMce. After infecting J774A.1 cells, transcription levels of the mce gene in L.interrogans strain 56601 were remarkably up-regulated. The constructed prokaryotic expression system of mce gene and the prepared antiserum against rMce provide useful tools for further study of the gene function.

Soil fertility and growth of Eucalyptus grandis in Brazil under ...

African Journals Online (AJOL)

Silvicultural operations such as soil preparation, logging residue management and application of fertilisers can influence soil fertility, and hence nutrient uptake and tree growth. This paper reports the effect of site management practices of minimum and intensive cultivation of the soil on the growth of a stand of Eucalyptus ...

Hardening of eucalyptus seedlings via salicylic acid application

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Eduardo Henrique Lima Mazzuchelli

2014-09-01

Full Text Available The agricultural and forest productivity suffer restrictions imposed by water stress, high temperature and high solar radiation. This study aimed to evaluate the capacity of stress attenuation and growth promotion of salicylic acid (SA application in eucalyptus (E. urophylla x E. grandis hybrid seedlings under water stress. A completely randomized design, in a 3x4 factorial scheme (three water treatments: constant irrigation with daily replacement of 40% (CI40% or 100% (CI100% of evapotranspirated water, and temporary irrigation suspension with replacement of only 40% of evapotranspirated water (S40%; and four SA concentrations: 0 mg L-1, 100 mg L-1, 200 mg L-1 and 300 mg L-1, was used. Plant photosynthetic parameters and biometric features were evaluated. The stomatal limitation was higher in plants under S40% irrigation, however, the SA application reverted this result, allowing the maintenance of the photosynthetic potential. There was interaction between irrigation regimes and SA doses for number of leaves, leaf area/number of leaves ratio and shoot and root dry mass. It was concluded that the application of 200 mg L -1 of SA positively affected the growth of eucalyptus seedlings under water stress, being considered an auxiliary management technique to their hardening process.

Growth modulation effects of CBM2a under the control of AtEXP4 and CaMV35S promoters in Arabidopsis thaliana, Nicotiana tabacum and Eucalyptus camaldulensis.

Science.gov (United States)

Keadtidumrongkul, Pornthep; Suttangkakul, Anongpat; Pinmanee, Phitsanu; Pattana, Kanokwan; Kittiwongwattana, Chokchai; Apisitwanich, Somsak; Vuttipongchaikij, Supachai

2017-08-01

The expression of cell-wall-targeted Carbohydrate Binding Modules (CBMs) can alter cell wall properties and modulate growth and development in plants such as tobacco and potato. CBM2a identified in xylanase 10A from Cellulomonas fimi is of particular interest for its ability to bind crystalline cellulose. However, its potential for promoting plant growth has not been explored. In this work, we tested the ability of CBM2a to promote growth when expressed using both CaMV35S and a vascular tissue-specific promoter derived from Arabidopsis expansin4 (AtEXP4) in three plant species: Arabidopsis, Nicotiana tabacum and Eucalyptus camaldulensis. In Arabidopsis, the expression of AtEXP4pro:CBM2a showed trends for growth promoting effects including the increase of root and hypocotyl lengths and the enlargements of the vascular xylem area, fiber cells and vessel cells. However, in N. tabacum, the expression of CBM2a under the control of either CaMV35S or AtEXP4 promoter resulted in subtle changes in the plant growth, and the thickness of secondary xylem and vessel and fiber cell sizes were generally reduced in the transgenic lines with AtEXP4pro:CBM2a. In Eucalyptus, while transgenics expressing CaMV35S:CBM2a showed very subtle changes compared to wild type, those transgenics with AtEXP4pro:CBM2a showed increases in plant height, enlargement of xylem areas and xylem fiber and vessel cells. These data provide comparative effects of expressing CBM2a protein in different plant species, and this finding can be applied for plant biomass improvement.

The role of heterologous chloroplast sequence elements in transgene integration and expression.

Science.gov (United States)

Ruhlman, Tracey; Verma, Dheeraj; Samson, Nalapalli; Daniell, Henry

2010-04-01

Heterologous regulatory elements and flanking sequences have been used in chloroplast transformation of several crop species, but their roles and mechanisms have not yet been investigated. Nucleotide sequence identity in the photosystem II protein D1 (psbA) upstream region is 59% across all taxa; similar variation was consistent across all genes and taxa examined. Secondary structure and predicted Gibbs free energy values of the psbA 5' untranslated region (UTR) among different families reflected this variation. Therefore, chloroplast transformation vectors were made for tobacco (Nicotiana tabacum) and lettuce (Lactuca sativa), with endogenous (Nt-Nt, Ls-Ls) or heterologous (Nt-Ls, Ls-Nt) psbA promoter, 5' UTR and 3' UTR, regulating expression of the anthrax protective antigen (PA) or human proinsulin (Pins) fused with the cholera toxin B-subunit (CTB). Unique lettuce flanking sequences were completely eliminated during homologous recombination in the transplastomic tobacco genomes but not unique tobacco sequences. Nt-Ls or Ls-Nt transplastomic lines showed reduction of 80% PA and 97% CTB-Pins expression when compared with endogenous psbA regulatory elements, which accumulated up to 29.6% total soluble protein PA and 72.0% total leaf protein CTB-Pins, 2-fold higher than Rubisco. Transgene transcripts were reduced by 84% in Ls-Nt-CTB-Pins and by 72% in Nt-Ls-PA lines. Transcripts containing endogenous 5' UTR were stabilized in nonpolysomal fractions. Stromal RNA-binding proteins were preferentially associated with endogenous psbA 5' UTR. A rapid and reproducible regeneration system was developed for lettuce commercial cultivars by optimizing plant growth regulators. These findings underscore the need for sequencing complete crop chloroplast genomes, utilization of endogenous regulatory elements and flanking sequences, as well as optimization of plant growth regulators for efficient chloroplast transformation.

Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis.

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Lezar, Sabine; Myburg, A A; Berger, D K; Wingfield, M J; Wingfield, B D

2004-11-01

Development of improved Eucalyptus genotypes involves the routine identification of breeding stock and superior clones. Currently, microsatellites and random amplified polymorphic DNA markers are the most widely used DNA-based techniques for fingerprinting of these trees. While these techniques have provided rapid and powerful fingerprinting assays, they are constrained by their reliance on gel or capillary electrophoresis, and therefore, relatively low throughput of fragment analysis. In contrast, recently developed microarray technology holds the promise of parallel analysis of thousands of markers in plant genomes. The aim of this study was to develop a DNA fingerprinting chip for Eucalyptus grandis and to investigate its usefulness for fingerprinting of eucalypt trees. A prototype chip was prepared using a partial genomic library from total genomic DNA of 23 E. grandis trees, of which 22 were full siblings. A total of 384 cloned genomic fragments were individually amplified and arrayed onto glass slides. DNA fingerprints were obtained for 17 individuals by hybridizing labeled genome representations of the individual trees to the 384-element chip. Polymorphic DNA fragments were identified by evaluating the binary distribution of their background-corrected signal intensities across full-sib individuals. Among 384 DNA fragments on the chip, 104 (27%) were found to be polymorphic. Hybridization of these polymorphic fragments was highly repeatable (R2>0.91) within the E. grandis individuals, and they allowed us to identify all 17 full-sib individuals. Our results suggest that DNA microarrays can be used to effectively fingerprint large numbers of closely related Eucalyptus trees.

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida

Science.gov (United States)

Pirooznia, Mehdi; Gong, Ping; Guan, Xin; Inouye, Laura S; Yang, Kuan; Perkins, Edward J; Deng, Youping

2007-01-01

Background Eisenia fetida, commonly known as red wiggler or compost worm, belongs to the Lumbricidae family of the Annelida phylum. Little is known about its genome sequence although it has been extensively used as a test organism in terrestrial ecotoxicology. In order to understand its gene expression response to environmental contaminants, we cloned 4032 cDNAs or expressed sequence tags (ESTs) from two E. fetida libraries enriched with genes responsive to ten ordnance related compounds using suppressive subtractive hybridization-PCR. Results A total of 3144 good quality ESTs (GenBank dbEST accession number EH669363–EH672369 and EL515444–EL515580) were obtained from the raw clone sequences after cleaning. Clustering analysis yielded 2231 unique sequences including 448 contigs (from 1361 ESTs) and 1783 singletons. Comparative genomic analysis showed that 743 or 33% of the unique sequences shared high similarity with existing genes in the GenBank nr database. Provisional function annotation assigned 830 Gene Ontology terms to 517 unique sequences based on their homology with the annotated genomes of four model organisms Drosophila melanogaster, Mus musculus, Saccharomyces cerevisiae, and Caenorhabditis elegans. Seven percent of the unique sequences were further mapped to 99 Kyoto Encyclopedia of Genes and Genomes pathways based on their matching Enzyme Commission numbers. All the information is stored and retrievable at a highly performed, web-based and user-friendly relational database called EST model database or ESTMD version 2. Conclusion The ESTMD containing the sequence and annotation information of 4032 E. fetida ESTs is publicly accessible at . PMID:18047730

Les plantations d' Eucalyptus au Sahel: distribution, importance ...

African Journals Online (AJOL)

Grâce à leur plasticité et leur rusticité, les espèces du genre Eucalyptus sont parmi les essences forestières les plus utilisées pour le reboisement en vue de lutter contre la désertification au Sahel. Toutefois, l'expansion rapide de ces espèces originaires d'Australie dans le Sahel, est surtout liée au succès économique de ...

A tool for identifying potential Eucalyptus nitens seed orchard sites ...

African Journals Online (AJOL)

Shy seed production in orchards of Eucalyptus nitens is a major barrier to the deployment of genetic gain in South African plantations. A machine learning method was used to identify optimal sites for the establishment of E. nitens seed orchards within the plantation forestry landscape of the summer rainfall region of South ...

Coppicing potential of Eucalyptus nitens : results from a field survey ...

African Journals Online (AJOL)

In order to determine factors which could have a positive influence on the coppicing potential of Eucalyptus nitens , a field survey was carried out at Draycott, near Estcourt in the KwaZulu-Natal Midlands. Five measures of the ability to coppice (stump survival, height of coppice, number of dominant shoots, coppicing ...

Comprehensive genome-wide analysis of the Aux/IAA gene family in Eucalyptus: evidence for the role of EgrIAA4 in wood formation.

Science.gov (United States)

Yu, Hong; Soler, Marçal; San Clemente, Hélène; Mila, Isabelle; Paiva, Jorge A P; Myburg, Alexander A; Bouzayen, Mondher; Grima-Pettenati, Jacqueline; Cassan-Wang, Hua

2015-04-01

Auxin plays a pivotal role in various plant growth and development processes, including vascular differentiation. The modulation of auxin responsiveness through the auxin perception and signaling machinery is believed to be a major regulatory mechanism controlling cambium activity and wood formation. To gain more insights into the roles of key Aux/IAA gene regulators of the auxin response in these processes, we identified and characterized members of the Aux/IAA family in the genome of Eucalyptus grandis, a tree of worldwide economic importance. We found that the gene family in Eucalyptus is slightly smaller than that in Populus and Arabidopsis, but all phylogenetic groups are represented. High-throughput expression profiling of different organs and tissues highlighted several Aux/IAA genes expressed in vascular cambium and/or developing xylem, some showing differential expression in response to developmental (juvenile vs. mature) and/or to environmental (tension stress) cues. Based on the expression profiles, we selected a promising candidate gene, EgrIAA4, for functional characterization. We showed that EgrIAA4 protein is localized in the nucleus and functions as an auxin-responsive repressor. Overexpressing a stabilized version of EgrIAA4 in Arabidopsis dramatically impeded plant growth and fertility and induced auxin-insensitive phenotypes such as inhibition of primary root elongation, lateral root emergence and agravitropism. Interestingly, the lignified secondary walls of the interfascicular fibers appeared very late, whereas those of the xylary fibers were virtually undetectable, suggesting that EgrIAA4 may play crucial roles in fiber development and secondary cell wall deposition. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Microwave-Assisted Extraction of Essential Oil from Eucalyptus: Study of the Effects of Operating Conditions

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A.A. Saoud

2006-12-01

Full Text Available Classical extraction of essential oil such as Soxhlet and steam distillation is still a formidable and time-solvent consuming. Microwave assisted process (MAP is used to accelerate the extraction process of target compounds. It can be used for the extraction of compounds from various plants and animal tissues, or the extraction of undesirable components from raw materials. The investigation of microwave extraction of eucalyptus (globules essential oil using ethanol as solvent was carried out. The influence of material (eucalyptus/solvent (ethanol ratio, required doses of microwave, and time of microwave exposure on extraction efficiency, was studied.

Cold alkaline extraction as a pretreatment for bioethanol production from eucalyptus, sugarcane bagasse and sugarcane straw

International Nuclear Information System (INIS)

Carvalho, Danila Morais de; Sevastyanova, Olena; Queiroz, José Humberto de; Colodette, Jorge Luiz

2016-01-01

Highlights: • Mathematical approach to optimize the process of cold alkaline extraction. • Hemicelluloses and lignin removal from biomasses by cold alkaline extraction. • Higher xylan and lignin removal for straw during pretreatment. • Formation of pseudo-extractives for eucalyptus during pretreatment. • Higher ethanol production for pretreated sugarcane straw. - Abstract: Optimal conditions for the cold alkaline extraction (CAE) pretreatment of eucalyptus, sugarcane bagasse and sugarcane straw are proposed in view of their subsequent bioconversion into ethanol through the semi-simultaneous saccharification and fermentation (SSSF) process (with presaccharification followed by simultaneous saccharification and fermentation, or SSF). The optimum conditions, which are identified based on an experiment with a factorial central composite design, resulted in the removal of 46%, 52% and 61% of the xylan and 15%, 37% and 45% of the lignin for eucalyptus, bagasse and straw, respectively. The formation of pseudo-extractives was observed during the CAE of eucalyptus. Despite the similar glucose concentration and yield for all biomasses after 12 h of presaccharification, the highest yield (0.065 g_e_t_h_a_n_o_l/g_b_i_o_m_a_s_s), concentrations (5.74 g L"−"1) and volumetric productivity for ethanol (0.57 g L"−"1 h"−"1) were observed for the sugarcane straw. This finding was most likely related to the improved accessibility of cellulose that resulted from the removal of the largest amount of xylan and lignin.

Aspectos biológicos de Thyrinteina arnobia (Lep.: Geometriadae provenientes de lagartas criadas em folhas de Eucalyptus cloeziana ou de Psidium guajava sob condições de campo Biological aspects of Thyrinteina arnobia (Lep.: Geometridae adults originated from caterpillars reared on leaves of Eucalyptus cloeziana or Psidium guajava under field conditions

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Anderson Mathias Holtz

2003-12-01

Full Text Available Os plantios de Eucalyptus no Brasil podem sofrer danos por espécies nativas de insetos de diversas ordens, como Orthoptera, Coleoptera e Lepidoptera. Esses insetos podem alimentar-se tanto de mirtáceas brasileiras como goiabeira, gabirobeira, jabuticabeira, entre outras, como de espécies do gênero Eucalyptus. Entre os desfolhadores, destaca-se Thyrinteina arnobia (Stoll (Lepidoptera: Geometridae como o mais daninho dessa ordem para a eucaliptocultura brasileira. Este trabalho teve por objetivo avaliar aspectos biológicos de adultos de T. arnobia provenientes de lagartas alimentadas com plantas de eucalipto e, ou, goiabeira. Adultos deste inseto criados em folhas de eucalipto e, ou, de goiabeira apresentaram diferenças significativas para a maioria dos aspectos biológicos avaliados, exceto para a duração dos períodos de préoviposição, de oviposição e razão sexual. Assim, insetos herbívoros que vivem em hospedeiros filogeneticamente próximos ao eucalipto são capazes de causar danos consideráveis em reflorestamentos com espécies desse grupo, o que provavelmente ocorre pelo fato de elas estarem ainda em processo de adaptação a essa praga que atacaria o eucalipto, por estar fugindo da pressão exercida por barreiras físicas e químicas existentes nas mirtáceas nativas brasileiras.Eucalyptus plantations in Brazil may be damaged by native insects of many orders including Orthoptera, Coleoptera and Lepidoptera. These insects feed on Brazilian tree species of the family Myrtaceae to which the genus Eucalyptus belongs. The Lepidoptera Thyrinteina arnobia Stoll (Lepidoptera: Geometridae is the most harmful defoliator of Eucalyptus in Brazil. The objective of this work was to evaluate biological aspects of T. arnobia adults originated from caterpillars fed on guava or eucalyptus plants. Adults of T. arnobia originated from caterpillars reared with eucalyptus or guava leaves presented significant differences for most biological

Supply chain optimization of sugarcane first generation and eucalyptus second generation ethanol production in Brazil

International Nuclear Information System (INIS)

Jonker, J.G.G.; Junginger, H.M.; Verstegen, J.A.; Lin, T.; Rodríguez, L.F.; Ting, K.C.; Faaij, A.P.C.; Hilst, F. van der

2016-01-01

Highlights: • Optimal location & scale of ethanol plants for expansion in Goiás until 2030. • Ethanol costs from sugarcane vary between 710 and 752 US$/m"3 in 2030. • For eucalyptus-based ethanol production costs vary between 543 and 560 US$/m"3 in 2030. • System-wide optimization has a marginal impact on overall production costs. • The overall GHG emission intensity is mainly impacted by former land use. - Abstract: The expansion of the ethanol industry in Brazil faces two important challenges: to reduce total ethanol production costs and to limit the greenhouse gas (GHG) emission intensity of the ethanol produced. The objective of this study is to economically optimize the scale and location of ethanol production plants given the expected expansion of biomass supply regions. A linear optimization model is utilized to determine the optimal location and scale of sugarcane and eucalyptus industrial processing plants given the projected spatial distribution of the expansion of biomass production in the state of Goiás between 2012 and 2030. Three expansion approaches evaluated the impact on ethanol production costs of expanding an existing industry in one time step (one-step), or multiple time steps (multi-step), or constructing a newly emerging ethanol industry in Goiás (greenfield). In addition, the GHG emission intensity of the optimized ethanol supply chains are calculated. Under the three expansion approaches, the total ethanol production costs of sugarcane ethanol decrease from 894 US$/m"3 ethanol in 2015 to 752, 715, and 710 US$/m"3 ethanol in 2030 for the multi-step, one step and greenfield expansion respectively. For eucalyptus, ethanol production costs decrease from 635 US$/m"3 in 2015 to 560 and 543 US$/m"3 in 2030 for the multi-step and one-step approach. A general trend is the use of large scale industrial processing plants, especially towards 2030 due to increased biomass supply. We conclude that a system-wide optimization as a marginal

Application of Alkaline Ionic Liquids in the Pretreatment Process of Eucalyptus Kraft Pulping

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Yi Hou

2016-09-01

Full Text Available In order to explore the potential application of green solvent ionic liquids (ILs in the kraft pulping process, eucalyptus wood was pretreated by [Mmim]DMP before normal pulping. The results showed that materials pretreated shortly by the ionic liquid had a higher yield and viscosity coupled with a lower potassium permanganate value and residual lignin content in the pulp, as a result of the cooking process. It was also inferred that alkaline [Mmim]DMP pretreatment could dissolve lignin effectively from fiber to result in a stronger binding force and more entangled properties. Paper tensile and burst strength were improved by about 40% and 60%, respectively. These results provide a new way for eucalyptus to be utilized in the kraft pulping process.

Heat capacity of a white-eucalyptus biocarbon template for SiC/Si ecoceramics

Science.gov (United States)

Parfen'eva, L. S.; Smirnov, B. I.; Smirnova, I. A.; Wlosewicz, D.; Misiorek, H.; Jezowski, A.; Mucha, J.; de Arellano-Lopez, A. R.; Martinez-Fernandez, J.; Varela-Feria, F. M.; Krivchikov, A. I.

2006-11-01

The heat capacity C p of a biocarbon template based on white eucalyptus wood is measured at a constant pressure in the temperature range T = 3.5 300 K. The phonon mean free path l for a white-eucalyptus biocarbon template is calculated from the measured dependence C p (T) and data available in the literature on the phonon thermal conductivity and velocity of sound. It is established that, in the range 100 300 K, the phonon mean free path l is nearly constant and equal to ˜13 Å. This value is close to the smallest size of graphite-like crystallites (˜12 Å), which was derived earlier from x-ray diffraction data for a quasi-amorphous biocarbon template.

A facile and green preparation of reduced graphene oxide using Eucalyptus leaf extract

Science.gov (United States)

Li, Chengyang; Zhuang, Zechao; Jin, Xiaoying; Chen, Zuliang

2017-11-01

In this paper, a green and facile synthesis of reduced graphene oxide (GO) by Eucalyptus leaf extract (EL-RGO) was investigated, which was characterized with ultraviolet-visible spectroscopy (UV), Raman spectroscopy, X-ray diffraction (XRD), scanning electron microscope (SEM), atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS) and Thermal gravimetric analysis (TG). Eucalyptus leaf extract also play both reducing and capping stabilizing agents prepared EL-RGO as shown a good stability and electrochemical properties. This approach could provide an alternative method to prepare EL-RGO in large-scale production. Moreover, the good electrochemical property and biocompatibility can be used in various applications. In addition, the merit of this study is that both the oxidized products and the reducing agents are environmental friendly by green reduction.

Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range

NARCIS (Netherlands)

Massa, Sonia I.; Pearson, Gareth A.; Aires, Tania; Kube, Michael; Olsen, Jeanine L.; Reinhardt, Richard; Serrao, Ester A.; Arnaud-Haond, Sophie

Predicted global climate change threatens the distributional ranges of species worldwide. We identified genes expressed in the intertidal seagrass Zostera midi during recovery from a simulated low tide heat-shock exposure. Five Expressed Sequence Tag (EST) libraries were compared, corresponding to

Cell-free translational screening of an expression sequence tag library of Clonorchis sinensis for novel antigen discovery.

Science.gov (United States)

Kasi, Devi; Catherine, Christy; Lee, Seung-Won; Lee, Kyung-Ho; Kim, Yu Jung; Ro Lee, Myeong; Ju, Jung Won; Kim, Dong-Myung

2017-05-01

The rapidly evolving cloning and sequencing technologies have enabled understanding of genomic structure of parasite genomes, opening up new ways of combatting parasite-related diseases. To make the most of the exponentially accumulating genomic data, however, it is crucial to analyze the proteins encoded by these genomic sequences. In this study, we adopted an engineered cell-free protein synthesis system for large-scale expression screening of an expression sequence tag (EST) library of Clonorchis sinensis to identify potential antigens that can be used for diagnosis and treatment of clonorchiasis. To allow high-throughput expression and identification of individual genes comprising the library, a cell-free synthesis reaction was designed such that both the template DNA and the expressed proteins were co-immobilized on the same microbeads, leading to microbead-based linkage of the genotype and phenotype. This reaction configuration allowed streamlined expression, recovery, and analysis of proteins. This approach enabled us to identify 21 antigenic proteins. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 33:832-837, 2017. © 2017 American Institute of Chemical Engineers.

Abiotic Stress-Related Expressed Sequence Tags from the Diploid Strawberry Fragaria vesca f. semperflorens

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Maximo. Rivarola

2011-03-01

Full Text Available Strawberry ( spp. is a eudicotyledonous plant that belongs to the Rosaceae family, which includes other agronomically important plants such as raspberry ( L. and several tree-fruit species. Despite the vital role played by cultivated strawberry in agriculture, few stress-related gene expression characterizations of this crop are available. To increase the diversity of available transcriptome sequence, we produced 41,430 L. expressed sequence tags (ESTs from plants growing under water-, temperature-, and osmotic-stress conditions as well as a combination of heat and osmotic stresses that is often found in irrigated fields. Clustering and assembling of the ESTs resulted in a total of 11,836 contigs and singletons that were annotated using Gene Ontology (GO terms. Furthermore, over 1200 sequences with no match to available Rosaceae ESTs were found, including six that were assigned the “response to stress” GO category. Analysis of EST frequency provided an estimate of steady state transcript levels, with 91 sequences exhibiting at least a 20-fold difference between treatments. This EST collection represents a useful resource to advance our understanding of the abiotic stress-response mechanisms in strawberry. The sequence information may be translated to valuable tree crops in the Rosaceae family, where whole-plant treatments are not as simple or practical.

Development of expressed sequence tag-simple sequence repeat markers for genetic characterization and population structure analysis of Praxelis clematidea (Asteraceae).

Science.gov (United States)

Wang, Q Z; Huang, M; Downie, S R; Chen, Z X

2016-05-23

Invasive plants tend to spread aggressively in new habitats and an understanding of their genetic diversity and population structure is useful for their management. In this study, expressed sequence tag-simple sequence repeat (EST-SSR) markers were developed for the invasive plant species Praxelis clematidea (Asteraceae) from 5548 Stevia rebaudiana (Asteraceae) expressed sequence tags (ESTs). A total of 133 microsatellite-containing ESTs (2.4%) were identified, of which 56 (42.1%) were hexanucleotide repeat motifs and 50 (37.6%) were trinucleotide repeat motifs. Of the 24 primer pairs designed from these 133 ESTs, 7 (29.2%) resulted in significant polymorphisms. The number of alleles per locus ranged from 5 to 9. The relatively high genetic diversity (H = 0.2667, I = 0.4212, and P = 100%) of P. clematidea was related to high gene flow (Nm = 1.4996) among populations. The coefficient of population differentiation (GST = 0.2500) indicated that most genetic variation occurred within populations. A Mantel test suggested that there was significant correlation between genetic distance and geographical distribution (r = 0.3192, P = 0.012). These results further support the transferability of EST-SSR markers between closely related genera of the same family.

BALANCE OF WATER AND ENERGY FOR EUCALYPTUS PLANTATIONS WITH PARTIAL SOIL COVER

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Mariana Gonçalves dos Reis

2014-03-01

Full Text Available http://dx.doi.org/10.5902/1980509813329Eucalyptus plots with initial development ages presented discontinuity in soil cover, resulting in greaterexposure of the leaves to wind and solar radiation, which alters soil-plant-atmosphere interactions. Theobjective of this study was to study the components of the water and energy balances along the first yearof eucalyptus development in the Brazilian coastal plain region. The experimental site is located in anarea belonging to the company Fibria in the municipality of Aracruz, Espírito Santo state, Brazil. Thespace between the planted eucalyptus trees in the area studied was 3 x 3 m and the data of planting wason August 15th , 2004. The period of study lasted from the planting date until the plot reached an ageof 19 months. It was verified that there was a greater availability of energy during the summer and theprecipitation directly influenced the energy balance where during the period of study the energy available necessary for evapotranspiration was always greater than the fraction necessary for heating the soil-plantatmospheresystem, presenting a λE/Rn ratio of 59.57%. It was also observed that the water balance with themodeled evapotranspiration showed a good correspondence with the observed moisture content, presentinga determination coefficient of 0,94. In the majority of trees, greater indices of leaf and root system areasfavored evapotranspiration, indicating that most energy available was utilized for changing the phase ofwater

In silico Analysis of 3′-End-Processing Signals in Aspergillus oryzae Using Expressed Sequence Tags and Genomic Sequencing Data

Science.gov (United States)

Tanaka, Mizuki; Sakai, Yoshifumi; Yamada, Osamu; Shintani, Takahiro; Gomi, Katsuya

2011-01-01

To investigate 3′-end-processing signals in Aspergillus oryzae, we created a nucleotide sequence data set of the 3′-untranslated region (3′ UTR) plus 100 nucleotides (nt) sequence downstream of the poly(A) site using A. oryzae expressed sequence tags and genomic sequencing data. This data set comprised 1065 sequences derived from 1042 unique genes. The average 3′ UTR length in A. oryzae was 241 nt, which is greater than that in yeast but similar to that in plants. The 3′ UTR and 100 nt sequence downstream of the poly(A) site is notably U-rich, while the region located 15–30 nt upstream of the poly(A) site is markedly A-rich. The most frequently found hexanucleotide in this A-rich region is AAUGAA, although this sequence accounts for only 6% of all transcripts. These data suggested that A. oryzae has no highly conserved sequence element equivalent to AAUAAA, a mammalian polyadenylation signal. We identified that putative 3′-end-processing signals in A. oryzae, while less well conserved than those in mammals, comprised four sequence elements: the furthest upstream U-rich element, A-rich sequence, cleavage site, and downstream U-rich element flanking the cleavage site. Although these putative 3′-end-processing signals are similar to those in yeast and plants, some notable differences exist between them. PMID:21586533

Gene and genome-centric analyses of koala and wombat fecal microbiomes point to metabolic specialization for Eucalyptus digestion

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Miriam E. Shiffman

2017-11-01

Full Text Available The koala has evolved to become a specialist Eucalyptus herbivore since diverging from its closest relative, the wombat, a generalist herbivore. This niche adaptation involves, in part, changes in the gut microbiota. The goal of this study was to compare koala and wombat fecal microbiomes using metagenomics to identify potential differences attributable to dietary specialization. Several populations discriminated between the koala and wombat fecal communities, most notably S24-7 and Synergistaceae in the koala, and Christensenellaceae and RF39 in the wombat. As expected for herbivores, both communities contained the genes necessary for lignocellulose degradation and urea recycling partitioned and redundantly encoded across multiple populations. Secondary metabolism was overrepresented in the koala fecal samples, consistent with the need to process Eucalyptus secondary metabolites. The Synergistaceae population encodes multiple pathways potentially relevant to Eucalyptus compound metabolism, and is predicted to be a key player in detoxification of the koala’s diet. Notably, characterized microbial isolates from the koala gut appear to be minor constituents of this habitat, and the metagenomes provide the opportunity for genome-directed isolation of more representative populations. Metagenomic analysis of other obligate and facultative Eucalyptus folivores will reveal whether putatively detoxifying bacteria identified in the koala are shared across these marsupials.

Suficiência amostral para coletas de serapilheira acumulada sobre o solo em Pinus elliottii Engelm, Eucalyptus sp. E floresta estacional decidual Adequate sampling for collection of litter accumulated on the soil in Pinus elliottii engelm, Eucalyptus sp. And seasonal deciduous forest

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Isabel Sandra Kleinpaul

2005-12-01

Full Text Available O presente estudo objetivou determinar a suficiência amostral para coletas de serapilheira acumulada sobre o solo em povoamentos de Pinus elliottii, Eucalyptus sp., ambos plantados no Campus da Universidade Federal de Santa Maria e em uma área de Floresta Estacional Decidual (FED localizada no Morro do Elefante, Santa Maria, RS. Para a realização do estudo, foram coletadas 100 amostras de serapilheira por floresta, com o auxílio de uma moldura quadrada de 25 cm de lado, totalizando 300 amostras, as quais foram separadas nas seguintes frações: acículas ou folhas, galhos, estruturas reprodutivas, cascas e resíduos. Com base nos pesos de matéria seca de cada fração, realizou-se a análise estatística dos dados, visando à estabilização dos valores do coeficiente de variação (CV%. Para Pinus elliottii, a maior contribuição na formação da serapilheira foi dada pelas acículas, com 57,2%; em Eucalyptus sp., isso ocorreu com os galhos (38,8% e na FED, novamente com as folhas, que representaram 49,6% da serapilheira. No Pinus elliottii, o maior CV% se deu nos resíduos, seguido de estruturas reprodutivas. Em Eucalyptus sp., o maior CV% foi encontrado em cascas, seguido de galhos. Na FED, as cascas tiveram o maior CV%. A suficiência amostral necessária para Pinus elliottii foi de 40, sendo esse o povoamento que necessitou de menos amostras para estabilizar o CV%. Em Eucalyptus sp., a suficiência amostral foi de 70, enquanto na FED foram necessárias 80 amostras.This study determined the sample sufficiency for the collection of litter accumulated on the soil, in Pinus elliottii and Eucalyptus sp. stands, planted in the Campus of the Federal University of Santa Maria and a Seasonal Deciduous Forest, located at the "Morro do Elefante", Santa Maria - RS. To carry out this study, 100 samples were collected per site, using a square frame (25 cm², totaling 300 samples. The samples were separated in the following fractions: needles or

An expressed sequence tag (EST) data mining strategy succeeding in the discovery of new G-protein coupled receptors.

Science.gov (United States)

Wittenberger, T; Schaller, H C; Hellebrand, S

2001-03-30

We have developed a comprehensive expressed sequence tag database search method and used it for the identification of new members of the G-protein coupled receptor superfamily. Our approach proved to be especially useful for the detection of expressed sequence tag sequences that do not encode conserved parts of a protein, making it an ideal tool for the identification of members of divergent protein families or of protein parts without conserved domain structures in the expressed sequence tag database. At least 14 of the expressed sequence tags found with this strategy are promising candidates for new putative G-protein coupled receptors. Here, we describe the sequence and expression analysis of five new members of this receptor superfamily, namely GPR84, GPR86, GPR87, GPR90 and GPR91. We also studied the genomic structure and chromosomal localization of the respective genes applying in silico methods. A cluster of six closely related G-protein coupled receptors was found on the human chromosome 3q24-3q25. It consists of four orphan receptors (GPR86, GPR87, GPR91, and H963), the purinergic receptor P2Y1, and the uridine 5'-diphosphoglucose receptor KIAA0001. It seems likely that these receptors evolved from a common ancestor and therefore might have related ligands. In conclusion, we describe a data mining procedure that proved to be useful for the identification and first characterization of new genes and is well applicable for other gene families. Copyright 2001 Academic Press.

Response of Eucalyptus occidentais to water stress induced by NaCl

Energy Technology Data Exchange (ETDEWEB)

Itai, C.

1978-01-01

Eucalyptus occidentalis plants were exposed to NaCl in their culture solution for various time. Determination of cytokinin, abscisic acid, /sup 14/C leucine incorporation of E. occidentalis, a xerophyte, does not differ from the response of mesophytes to such treatments. 13 references, 1 figure, 4 tables.

Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.)

Science.gov (United States)

Background: Due to a relatively high level of codominant inheritance and transferability within and among taxonomic groups, simple sequence repeat (SSR) markers are important elements in comparative mapping and delineation of genomic regions associated with traits of economic importance. Expressed S...

Effects of Successive Rotation Regimes on Carbon Stocks in Eucalyptus Plantations in Subtropical China Measured over a Full Rotation.

Science.gov (United States)

Li, Xiaoqiong; Ye, Duo; Liang, Hongwen; Zhu, Hongguang; Qin, Lin; Zhu, Yuling; Wen, Yuanguang

2015-01-01

Plantations play an important role in carbon sequestration and the global carbon cycle. However, there is a dilemma in that most plantations are managed on short rotations, and the carbon sequestration capacities of these short-rotation plantations remain understudied. Eucalyptus has been widely planted in the tropics and subtropics due to its rapid growth, high adaptability, and large economic return. Eucalyptus plantations are primarily planted in successive rotations with a short rotation length of 6~8 years. In order to estimate the carbon-stock potential of eucalyptus plantations over successive rotations, we chose a first rotation (FR) and a second rotation (SR) stand and monitored the carbon stock dynamics over a full rotation from 1998 to 2005. Our results showed that carbon stock in eucalyptus trees (TC) did not significantly differ between rotations, while understory vegetation (UC) and soil organic matter (SOC) stored less carbon in the SR (1.01 vs. 2.76 Mg.ha(-1) and 70.68 vs. 81.08 Mg. ha(-1), respectively) and forest floor carbon (FFC) conversely stored more (2.80 vs. 2.34 Mg. ha(-1)). The lower UC and SOC stocks in the SR stand resulted in 1.13 times lower overall ecosystem carbon stock. Mineral soils and overstory trees were the two dominant carbon pools in eucalyptus plantations, accounting for 73.77%~75.06% and 20.50%~22.39%, respectively, of the ecosystem carbon pool. However, the relative contribution (to the ecosystem pool) of FFC stocks increased 1.38 times and that of UC decreased 2.30 times in the SR versus FR stand. These carbon pool changes over successive rotations were attributed to intensive successive rotation regimes of eucalyptus plantations. Our eight year study suggests that for the sustainable development of short-rotation plantations, a sound silvicultural strategy is required to achieve the best combination of high wood yield and carbon stock potential.

Effects of Successive Rotation Regimes on Carbon Stocks in Eucalyptus Plantations in Subtropical China Measured over a Full Rotation.

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Xiaoqiong Li

Full Text Available Plantations play an important role in carbon sequestration and the global carbon cycle. However, there is a dilemma in that most plantations are managed on short rotations, and the carbon sequestration capacities of these short-rotation plantations remain understudied. Eucalyptus has been widely planted in the tropics and subtropics due to its rapid growth, high adaptability, and large economic return. Eucalyptus plantations are primarily planted in successive rotations with a short rotation length of 6~8 years. In order to estimate the carbon-stock potential of eucalyptus plantations over successive rotations, we chose a first rotation (FR and a second rotation (SR stand and monitored the carbon stock dynamics over a full rotation from 1998 to 2005. Our results showed that carbon stock in eucalyptus trees (TC did not significantly differ between rotations, while understory vegetation (UC and soil organic matter (SOC stored less carbon in the SR (1.01 vs. 2.76 Mg.ha(-1 and 70.68 vs. 81.08 Mg. ha(-1, respectively and forest floor carbon (FFC conversely stored more (2.80 vs. 2.34 Mg. ha(-1. The lower UC and SOC stocks in the SR stand resulted in 1.13 times lower overall ecosystem carbon stock. Mineral soils and overstory trees were the two dominant carbon pools in eucalyptus plantations, accounting for 73.77%~75.06% and 20.50%~22.39%, respectively, of the ecosystem carbon pool. However, the relative contribution (to the ecosystem pool of FFC stocks increased 1.38 times and that of UC decreased 2.30 times in the SR versus FR stand. These carbon pool changes over successive rotations were attributed to intensive successive rotation regimes of eucalyptus plantations. Our eight year study suggests that for the sustainable development of short-rotation plantations, a sound silvicultural strategy is required to achieve the best combination of high wood yield and carbon stock potential.

Preliminary study of prairies forested with Eucalyptus sp. at the northwestern Uruguayan soils

International Nuclear Information System (INIS)

Carrasco-Letelier, L.; Eguren, G.; Castineira, C.; Parra, O.; Panario, D.

2004-01-01

The forestation of Uruguayan natural prairie soil does not always ensure an increase of soil carbon sink. - The land cover change of Uruguayan Forestal Plan provoked biogeochemical changes on horizon Au 1 of Argiudols; in native prairies which were replaced by monoculture Eucalyptus sp. plantation with 20 year rotations as trees. Five fields forested and six natural prairies were compared. The results not only show a statistical significant soil acidification, diminution of soil organic carbon, increase of aliphaticity degree of humic substances, and increase of affinity and capacity of hydrolytic activity from soil microbial communities for forested sites with Eucalyptus sp. but also, a tendency of podzolization and/or mineralization by this kind of land cover changes, with a net soil organic lost of 16.6 tons ha -1 in the horizon Au 1 of soil under Eucalyptus sp. plantation compared with prairie. Besides, these results point out the necessity of correction of the methodology used by assigned Uruguayan commission to assess the national net emission of greenhouse gases, since the mineralization and/or podzolization process detected in forested soil imply a overestimation of soil organic carbon. The biochemical parameters show a statistical significant correlation between the soil organic carbon status and these parameters which were presented as essential for the correct evaluation of Uruguayan soil carbon sink

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments.

Science.gov (United States)

Bartholomé, Jérôme; Mabiala, André; Savelli, Bruno; Bert, Didier; Brendel, Oliver; Plomion, Christophe; Gion, Jean-Marc

2015-06-01

In the context of climate change, the water-use efficiency (WUE) of highly productive tree varieties, such as eucalypts, has become a major issue for breeding programmes. This study set out to dissect the genetic architecture of carbon isotope composition (δ(13) C), a proxy of WUE, across several environments. A family of Eucalyptus urophylla × E. grandis was planted in three trials and phenotyped for δ(13) C and growth traits. High-resolution genetic maps enabled us to target genomic regions underlying δ(13) C quantitative trait loci (QTLs) on the E. grandis genome. Of the 15 QTLs identified for δ(13) C, nine were stable across the environments and three displayed significant QTL-by-environment interaction, suggesting medium to high genetic determinism for this trait. Only one colocalization was found between growth and δ(13) C. Gene ontology (GO) term enrichment analysis suggested candidate genes related to foliar δ(13) C, including two involved in the regulation of stomatal movements. This study provides the first report of the genetic architecture of δ(13) C and its relation to growth in Eucalyptus. The low correlations found between the two traits at phenotypic and genetic levels suggest the possibility of improving the WUE of Eucalyptus varieties without having an impact on breeding for growth. © 2015 CIRAD. New Phytologist © 2015 New Phytologist Trust.

microRNA expression profiling in fetal single ventricle malformation identified by deep sequencing.

Science.gov (United States)

Yu, Zhang-Bin; Han, Shu-Ping; Bai, Yun-Fei; Zhu, Chun; Pan, Ya; Guo, Xi-Rong

2012-01-01

microRNAs (miRNAs) have emerged as key regulators in many biological processes, particularly cardiac growth and development, although the specific miRNA expression profile associated with this process remains to be elucidated. This study aimed to characterize the cellular microRNA profile involved in the development of congenital heart malformation, through the investigation of single ventricle (SV) defects. Comprehensive miRNA profiling in human fetal SV cardiac tissue was performed by deep sequencing. Differential expression of 48 miRNAs was revealed by sequencing by oligonucleotide ligation and detection (SOLiD) analysis. Of these, 38 were down-regulated and 10 were up-regulated in differentiated SV cardiac tissue, compared to control cardiac tissue. This was confirmed by real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis. Predicted target genes of the 48 differentially expressed miRNAs were analyzed by gene ontology and categorized according to cellular process, regulation of biological process and metabolic process. Pathway-Express analysis identified the WNT and mTOR signaling pathways as the most significant processes putatively affected by the differential expression of these miRNAs. The candidate genes involved in cardiac development were identified as potential targets for these differentially expressed microRNAs and the collaborative network of microRNAs and cardiac development related-mRNAs was constructed. These data provide the basis for future investigation of the mechanism of the occurrence and development of fetal SV malformations.

Growth and yield models for Eucalyptus grandis grown in Swaziland ...

African Journals Online (AJOL)

The aim of this study was to develop a stand-level growth and yield model for short-rotationEucalyptus grandis grown for pulp wood production at Piggs Peak in Swaziland. The data were derived from a Nelder 1a spacing trial established with E. grandis clonal cuttings in 1998 and terminated in 2005. Planting density ...

Ion Torrent PGM as tool for fungal community analysis: a case study of endophytes in Eucalyptus grandis reveals high taxonomic diversity.

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Martin Kemler

Full Text Available The Kingdom Fungi adds substantially to the diversity of life, but due to their cryptic morphology and lifestyle, tremendous diversity, paucity of formally described specimens, and the difficulty in isolating environmental strains into culture, fungal communities are difficult to characterize. This is especially true for endophytic communities of fungi living in healthy plant tissue. The developments in next generation sequencing technologies are, however, starting to reveal the true extent of fungal diversity. One of the promising new technologies, namely semiconductor sequencing, has thus far not been used in fungal diversity assessments. In this study we sequenced the internal transcribed spacer 1 (ITS1 nuclear encoded ribosomal RNA of the endophytic community of the economically important tree, Eucalyptus grandis, from South Africa using the Ion Torrent Personal Genome Machine (PGM. We determined the impact of various analysis parameters on the interpretation of the results, namely different sequence quality parameter settings, different sequence similarity cutoffs for clustering and filtering of databases for removal of sequences with incomplete taxonomy. Sequence similarity cutoff values only had a marginal effect on the identified family numbers, whereas different sequence quality filters had a large effect (89 vs. 48 families between least and most stringent filters. Database filtering had a small, but statistically significant, effect on the assignment of sequences to reference sequences. The community was dominated by Ascomycota, and particularly by families in the Dothidiomycetes that harbor well-known plant pathogens. The study demonstrates that semiconductor sequencing is an ideal strategy for environmental sequencing of fungal communities. It also highlights some potential pitfalls in subsequent data analyses when using a technology with relatively short read lengths.

Planarian homeobox genes: cloning, sequence analysis, and expression.

Science.gov (United States)

Garcia-Fernàndez, J; Baguñà, J; Saló, E

1991-01-01

Freshwater planarians (Platyhelminthes, Turbellaria, and Tricladida) are acoelomate, triploblastic, unsegmented, and bilaterally symmetrical organisms that are mainly known for their ample power to regenerate a complete organism from a small piece of their body. To identify potential pattern-control genes in planarian regeneration, we have isolated two homeobox-containing genes, Dth-1 and Dth-2 [Dugesia (Girardia) tigrina homeobox], by using degenerate oligonucleotides corresponding to the most conserved amino acid sequence from helix-3 of the homeodomain. Dth-1 and Dth-2 homeodomains are closely related (68% at the nucleotide level and 78% at the protein level) and show the conserved residues characteristic of the homeodomains identified to data. Similarity with most homeobox sequences is low (30-50%), except with Drosophila NK homeodomains (80-82% with NK-2) and the rodent TTF-1 homeodomain (77-87%). Some unusual amino acid residues specific to NK-2, TTF-1, Dth-1, and Dth-2 can be observed in the recognition helix (helix-3) and may define a family of homeodomains. The deduced amino acid sequences from the cDNAs contain, in addition to the homeodomain, other domains also present in various homeobox-containing genes. The expression of both genes, detected by Northern blot analysis, appear slightly higher in cephalic regions than in the rest of the intact organism, while a slight increase is detected in the central period (5 days) or regeneration. Images PMID:1714599

Molecular characterization, tissue expression and sequence variability of the barramundi (Lates calcarifer myostatin gene

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Smith-Keune Carolyn

2008-02-01

Full Text Available Abstract Background Myostatin (MSTN is a member of the transforming growth factor-β superfamily that negatively regulates growth of skeletal muscle tissue. The gene encoding for the MSTN peptide is a consolidate candidate for the enhancement of productivity in terrestrial livestock. This gene potentially represents an important target for growth improvement of cultured finfish. Results Here we report molecular characterization, tissue expression and sequence variability of the barramundi (Lates calcarifer MSTN-1 gene. The barramundi MSTN-1 was encoded by three exons 379, 371 and 381 bp in length and translated into a 376-amino acid peptide. Intron 1 and 2 were 412 and 819 bp in length and presented typical GT...AG splicing sites. The upstream region contained cis-regulatory elements such as TATA-box and E-boxes. A first assessment of sequence variability suggested that higher mutation rates are found in the 5' flanking region with several SNP's present in this species. A putative micro RNA target site has also been observed in the 3'UTR (untranslated region and is highly conserved across teleost fish. The deduced amino acid sequence was conserved across vertebrates and exhibited characteristic conserved putative functional residues including a cleavage motif of proteolysis (RXXR, nine cysteines and two glycosilation sites. A qualitative analysis of the barramundi MSTN-1 expression pattern revealed that, in adult fish, transcripts are differentially expressed in various tissues other than skeletal muscles including gill, heart, kidney, intestine, liver, spleen, eye, gonad and brain. Conclusion Our findings provide valuable insights such as sequence variation and genomic information which will aid the further investigation of the barramundi MSTN-1 gene in association with growth. The finding for the first time in finfish MSTN of a miRNA target site in the 3'UTR provides an opportunity for the identification of regulatory mutations on the

Distribution of Blue Gum Chalcid, Leptocybe invasa and it's Damage on Eucalyptus in East Africa

International Nuclear Information System (INIS)

Mutitu, K.E; Otieno, B.O; Oeba, V.O; Nyeko, P.; Day, R.K

2007-01-01

Blue Gum chalcid is a gall-forming wasp, which causes an extensive damage to Eucalyptus. It attacks mostly seedlings and field saplings. It causes damage on it's host by forming massive typical bump-shaped galls on trees canopy, specifically on the leaf midribs, petioles and stems of new growths. The pest was first reported in Kenya and Uganda in 2002 attacking the three major commercially grown Eucalyptus species; Eucalyptus grandis, E. camaldulennsis, E. saligna in East Africa. Eucalyptus is fast growing and widely planted in both plantations and farmers' woodlots. It is important for both industrial and domestic use. It is a major source of income generation for rural poor families. The objective of this study was to determine the spatial distribution, incidence and severity patterns of L. invasa and possible relationship to environment and biophysical factors in East Africa. Over 312 randomly selected stands were assessed for BGC incidence to it's distribution. In each identified stand 60 trees were selected from 3 randomly established plots of 20 trees each and BGC damage/incidence assessed on a 4-point scale. This was to determine the incidence and severity patterns. ANOVA using generalized linear procedures, regression analysis and correlation were done to determine the relationship between the percentage incidence of L. invasa infestation against altitude, age interval, agro-ecological zones and topography. There was widespread of pest in all the districts sampled. There was significant difference (p 0.05) on L. invasa incidence among the three species. The study recommends that. further studies on damage and L. invasa population dynamics relationship to environment and biophysical factors should be conducted

Effects of essential oils from Eucalyptus globulus leaves on soil organisms involved in leaf degradation.

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Carla Martins

Full Text Available The replacement of native Portuguese forests by Eucalyptus globulus is often associated with deleterious effects on terrestrial and aquatic communities. Several studies have suggested that such a phenomenon is linked with the leaf essential oils released into the environment during the Eucalyptus leaf degradation process. However, to date, the way these compounds affect leaf degradation in terrestrial systems i.e. by direct toxic effects to soil invertebrates or indirectly by affecting food of soil fauna, is still unknown. In order to explore this question, the effect of essential oils extracted from E. globulus leaves on terrestrial systems was investigated. Fungal growth tests with species known as leaf colonizers (Mucor hiemalis, Alternaria alternata, Penicillium sp., Penicillium glabrum and Fusarium roseum were performed to evaluate the antifungal effect of essential oils. In addition, a reproduction test with the collembolans Folsomia candida was done using a gradient of eucalyptus essential oils in artificial soil. The influence of essential oils on feeding behaviour of F. candida and the isopods Porcellio dilatatus was also investigated through food avoidance and consumption tests. Eucalyptus essential oils were lethal at concentrations between 2.5-20 µL/mL and inhibited growth of all fungal species between 1.25-5 µL/mL. The collembolan reproduction EC50 value was 35.0 (28.6-41.2 mg/kg and both collembola and isopods preferred leaves without oils. Results suggested that the effect of essential oils in leaf processing is related to direct toxic effects on fungi and soil fauna and to indirect effects on the quality and availability of food to soil invertebrates.

Development of an acetic acid tolerant Spathaspora passalidarum strain through evolutionary engineering with resistance to inhibitors compounds of autohydrolysate of Eucalyptus globulus

DEFF Research Database (Denmark)

Morales, Paulina; Gentina, Juan Carlos; Aroca, German

2017-01-01

-fold higher than those obtained with the native strain, respectively. Inhibitors composition present inEucalyptus globulus autohydrolysate were (g L−1): acetic acid, 4.7; furfural, 1.0; HMF, 0.36; formic acid, 0.6;syringaldehyde, 0.14 and vanillin, 0.017. When Eucalyptus globulus autohydrolysate...

Production of laminated veneer lumber LVL using veneer of Schizolobium amazonicum, Eucalyptus saligna and Pinus taeda

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Setsuo Iwakiri

2010-12-01

Full Text Available This research evaluated the quality of laminated veneer lumber - LVL manufactured with veneers of Schizolobium amazonicum (paricá, Eucalyptus saligna and Pinus taeda. The LVL panels were manufactured in the laboratory conditions composed by seven veneers, 2,0 mm thickness, with different structural compositions, using phenol-formaldehyde resin. The veneers of Schizolobium amazonicum- paricá- were pre-classified by using stress wave machine. The veneers of Eucalyptus saligna and Pinus taeda were disposed in the face layer to reinforce the structural strength of LVL panels. The LVL quality was evaluated using glue line shear strength and static bending test (MOE and MOR, edge and flat. Grading of paricá veneers based on MOEd did not affected significantly the results of the glue line shear strength and MOE and MOR edge. For the MOE and MOR flat, the use of veneers of MOEd grade 1 contributed significantly to increasing the average values of these properties. In the same way, using the Eucalyptus saligna veneers on the face of LVL resulted in higher average values of MOE and MOR, edge and flat.

A novel approach to sequence validating protein expression clones with automated decision making

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Mohr Stephanie E

2007-06-01

Full Text Available Abstract Background Whereas the molecular assembly of protein expression clones is readily automated and routinely accomplished in high throughput, sequence verification of these clones is still largely performed manually, an arduous and time consuming process. The ultimate goal of validation is to determine if a given plasmid clone matches its reference sequence sufficiently to be "acceptable" for use in protein expression experiments. Given the accelerating increase in availability of tens of thousands of unverified clones, there is a strong demand for rapid, efficient and accurate software that automates clone validation. Results We have developed an Automated Clone Evaluation (ACE system – the first comprehensive, multi-platform, web-based plasmid sequence verification software package. ACE automates the clone verification process by defining each clone sequence as a list of multidimensional discrepancy objects, each describing a difference between the clone and its expected sequence including the resulting polypeptide consequences. To evaluate clones automatically, this list can be compared against user acceptance criteria that specify the allowable number of discrepancies of each type. This strategy allows users to re-evaluate the same set of clones against different acceptance criteria as needed for use in other experiments. ACE manages the entire sequence validation process including contig management, identifying and annotating discrepancies, determining if discrepancies correspond to polymorphisms and clone finishing. Designed to manage thousands of clones simultaneously, ACE maintains a relational database to store information about clones at various completion stages, project processing parameters and acceptance criteria. In a direct comparison, the automated analysis by ACE took less time and was more accurate than a manual analysis of a 93 gene clone set. Conclusion ACE was designed to facilitate high throughput clone sequence

Genomic analysis of expressed sequence tags in American black bear Ursus americanus

Science.gov (United States)

2010-01-01

Background Species of the bear family (Ursidae) are important organisms for research in molecular evolution, comparative physiology and conservation biology, but relatively little genetic sequence information is available for this group. Here we report the development and analyses of the first large scale Expressed Sequence Tag (EST) resource for the American black bear (Ursus americanus). Results Comprehensive analyses of molecular functions, alternative splicing, and tissue-specific expression of 38,757 black bear EST sequences were conducted using the dog genome as a reference. We identified 18 genes, involved in functions such as lipid catabolism, cell cycle, and vesicle-mediated transport, that are showing rapid evolution in the bear lineage Three genes, Phospholamban (PLN), cysteine glycine-rich protein 3 (CSRP3) and Troponin I type 3 (TNNI3), are related to heart contraction, and defects in these genes in humans lead to heart disease. Two genes, biphenyl hydrolase-like (BPHL) and CSRP3, contain positively selected sites in bear. Global analysis of evolution rates of hibernation-related genes in bear showed that they are largely conserved and slowly evolving genes, rather than novel and fast-evolving genes. Conclusion We provide a genomic resource for an important mammalian organism and our study sheds new light on the possible functions and evolution of bear genes. PMID:20338065

Genomic analysis of expressed sequence tags in American black bear Ursus americanus.

Science.gov (United States)

Zhao, Sen; Shao, Chunxuan; Goropashnaya, Anna V; Stewart, Nathan C; Xu, Yichi; Tøien, Øivind; Barnes, Brian M; Fedorov, Vadim B; Yan, Jun

2010-03-26

Species of the bear family (Ursidae) are important organisms for research in molecular evolution, comparative physiology and conservation biology, but relatively little genetic sequence information is available for this group. Here we report the development and analyses of the first large scale Expressed Sequence Tag (EST) resource for the American black bear (Ursus americanus). Comprehensive analyses of molecular functions, alternative splicing, and tissue-specific expression of 38,757 black bear EST sequences were conducted using the dog genome as a reference. We identified 18 genes, involved in functions such as lipid catabolism, cell cycle, and vesicle-mediated transport, that are showing rapid evolution in the bear lineage Three genes, Phospholamban (PLN), cysteine glycine-rich protein 3 (CSRP3) and Troponin I type 3 (TNNI3), are related to heart contraction, and defects in these genes in humans lead to heart disease. Two genes, biphenyl hydrolase-like (BPHL) and CSRP3, contain positively selected sites in bear. Global analysis of evolution rates of hibernation-related genes in bear showed that they are largely conserved and slowly evolving genes, rather than novel and fast-evolving genes. We provide a genomic resource for an important mammalian organism and our study sheds new light on the possible functions and evolution of bear genes.

G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration

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Fasold Mario

2010-04-01

Full Text Available Abstract Background The brightness of the probe spots on expression microarrays intends to measure the abundance of specific mRNA targets. Probes with runs of at least three guanines (G in their sequence show abnormal high intensities which reflect rather probe effects than target concentrations. This G-bias requires correction prior to downstream expression analysis. Results Longer runs of three or more consecutive G along the probe sequence and in particular triple degenerated G at its solution end ((GGG1-effect are associated with exceptionally large probe intensities on GeneChip expression arrays. This intensity bias is related to non-specific hybridization and affects both perfect match and mismatch probes. The (GGG1-effect tends to increase gradually for microarrays of later GeneChip generations. It was found for DNA/RNA as well as for DNA/DNA probe/target-hybridization chemistries. Amplification of sample RNA using T7-primers is associated with strong positive amplitudes of the G-bias whereas alternative amplification protocols using random primers give rise to much smaller and partly even negative amplitudes. We applied positional dependent sensitivity models to analyze the specifics of probe intensities in the context of all possible short sequence motifs of one to four adjacent nucleotides along the 25meric probe sequence. Most of the longer motifs are adequately described using a nearest-neighbor (NN model. In contrast, runs of degenerated guanines require explicit consideration of next nearest neighbors (GGG terms. Preprocessing methods such as vsn, RMA, dChip, MAS5 and gcRMA only insufficiently remove the G-bias from data. Conclusions Positional and motif dependent sensitivity models accounts for sequence effects of oligonucleotide probe intensities. We propose a positional dependent NN+GGG hybrid model to correct the intensity bias associated with probes containing poly-G motifs. It is implemented as a single-chip based calibration

Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis.

Science.gov (United States)

Asamizu, Erika; Nakamura, Yasukazu; Sato, Shusei; Tabata, Satoshi

2004-02-01

To perform a comprehensive analysis of genes expressed in a model legume, Lotus japonicus, a total of 74472 3'-end expressed sequence tags (EST) were generated from cDNA libraries produced from six different organs. Clustering of sequences was performed with an identity criterion of 95% for 50 bases, and a total of 20457 non-redundant sequences, 8503 contigs and 11954 singletons were generated. EST sequence coverage was analyzed by using the annotated L. japonicus genomic sequence and 1093 of the 1889 predicted protein-encoding genes (57.9%) were hit by the EST sequence(s). Gene content was compared to several plant species. Among the 8503 contigs, 471 were identified as sequences conserved only in leguminous species and these included several disease resistance-related genes. This suggested that in legumes, these genes may have evolved specifically to resist pathogen attack. The rate of gene sequence divergence was assessed by comparing similarity level and functional category based on the Gene Ontology (GO) annotation of Arabidopsis genes. This revealed that genes encoding ribosomal proteins, as well as those related to translation, photosynthesis, and cellular structure were more abundantly represented in the highly conserved class, and that genes encoding transcription factors and receptor protein kinases were abundantly represented in the less conserved class. To make the sequence information and the cDNA clones available to the research community, a Web database with useful services was created at http://www.kazusa.or.jp/en/plant/lotus/EST/.

Performance and Emission of VCR-CI Engine with palm kernel and eucalyptus blends

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Srinivas kommana

2016-09-01

Full Text Available This study aims at complete replacement of conventional diesel fuel by biodiesel. In order to achieve that, palm kernel oil and eucalyptus oil blend has been chosen. Eucalyptus oil was blended with methyl ester of palm kernel oil in 5%, 10% and 15% by volume. Tests were conducted with diesel fuel and blends on a 4 stroke VCR diesel engine for comparative analysis with 220 bar injection pressure and 19:1 compression ratio. All the test fuels were used in computerized 4 stroke single cylinder variable compression ratio engine at five different loads (0, 6, 12, 18 and 24 N m. Present investigation depicts the improved combustion and reduced emissions for the PKO85% + EuO15% blend when compared to diesel at full load conditions.

Consequences to precipitation regimes of replacing native Brazilian Cerrado by managed Eucalyptus

Science.gov (United States)

Siqueira, M. B.; Mota, F. C. M.

2016-12-01

Before the large people influx and development of the central part of Brazil in the sixties, due to new capital Brasília, Cerrado, a typical Brazilian savanna-type vegetation, used to occupy about 2 million km2, going from the Amazon tropical forest, in the north, to the edges of what used to be the Atlantic forest in the southeast. Today, somewhat 50% of this area has given place to agriculture, pasture and managed forests. Understanding how Cerrado interacts with the atmosphere and how this interaction will be modified with this land-use change is a crucial step towards improving predictions of future climate-change scenarios. Cerrado is a vegetation adapted to a climate characterized by two distinct seasons, a wet season (Nov-Mar) and dry season (May-Ago), with April and October being transitions between seasons. Typically, 75% of precipitation happens in the wet-season months and only 5% during dry-season. In this study, it is investigated the potential impacts of the substitution of Cerrado to the eco-hydrological characteristics of the region. The focus here is Eucalyptus plantation, which has increased substantially in the last decade due to government incentives. Two eddy-covariance (EC) systems were installed, one in an undisturbed Cerrado Stricto area and other in a recently-established Eucalyptus plantation. The two areas are 1,400m apart and are subjected to the same meteorology and similar edaphic conditions. Besides instrumentation typical of EC towers, a soil-moisture profiling system was installed in each site. Surface flux data from the eddy-covariance towers, along with daily upper air sounding profiles collected at the Brasília International Airport (located 10Km from the towers), were used to drive a simplified Atmospheric Boundary Layer (ABL) slab model in order to investigate possible consequences of a large-scale shift from Cerrado to Eucalyptus to precipitation regimes in the region. Preliminary results show that replacing Cerrado for