2D Unitary ESPRIT Based Super-Resolution Channel Estimation for Millimeter-Wave Massive MIMO with Hybrid Precoding

KAUST Repository

Liao, Anwen

2017-11-01

Millimeter-wave (mmWave) massive multiple-input multiple-output (MIMO) with hybrid precoding is a promising technique for the future 5G wireless communications. Due to a large number of antennas but a much smaller number of radio frequency (RF) chains, estimating the high-dimensional mmWave massive MIMO channel will bring the large pilot overhead. To overcome this challenge, this paper proposes a super-resolution channel estimation scheme based on two-dimensional (2D) unitary ESPRIT algorithm. By exploiting the angular sparsity of mmWave channels, the continuously distributed angle of arrivals/departures (AoAs/AoDs) can be jointly estimated with high accuracy. Specifically, by designing the uplink training signals at both base station (BS) and mobile station (MS), we first use low pilot overhead to estimate a low-dimensional effective channel, which has the same shift-invariance of array response as the high-dimensional mmWave MIMO channel to be estimated. From the low-dimensional effective channel, the superresolution estimates of AoAs and AoDs can be jointly obtained by exploiting the 2D unitary ESPRIT channel estimation algorithm. Furthermore, the associated path gains can be acquired based on the least squares (LS) criterion. Finally, we can reconstruct the high-dimensional mmWave MIMO channel according to the obtained AoAs, AoDs, and path gains. Simulation results have confirmed that the proposed scheme is superior to conventional schemes with a much lower pilot overhead.

2D Unitary ESPRIT Based Super-Resolution Channel Estimation for Millimeter-Wave Massive MIMO with Hybrid Precoding

KAUST Repository

Liao, Anwen; Gao, Zhen; Wu, Yongpeng; Wang, Hua; Alouini, Mohamed-Slim

2017-01-01

Millimeter-wave (mmWave) massive multiple-input multiple-output (MIMO) with hybrid precoding is a promising technique for the future 5G wireless communications. Due to a large number of antennas but a much smaller number of radio frequency (RF) chains, estimating the high-dimensional mmWave massive MIMO channel will bring the large pilot overhead. To overcome this challenge, this paper proposes a super-resolution channel estimation scheme based on two-dimensional (2D) unitary ESPRIT algorithm. By exploiting the angular sparsity of mmWave channels, the continuously distributed angle of arrivals/departures (AoAs/AoDs) can be jointly estimated with high accuracy. Specifically, by designing the uplink training signals at both base station (BS) and mobile station (MS), we first use low pilot overhead to estimate a low-dimensional effective channel, which has the same shift-invariance of array response as the high-dimensional mmWave MIMO channel to be estimated. From the low-dimensional effective channel, the superresolution estimates of AoAs and AoDs can be jointly obtained by exploiting the 2D unitary ESPRIT channel estimation algorithm. Furthermore, the associated path gains can be acquired based on the least squares (LS) criterion. Finally, we can reconstruct the high-dimensional mmWave MIMO channel according to the obtained AoAs, AoDs, and path gains. Simulation results have confirmed that the proposed scheme is superior to conventional schemes with a much lower pilot overhead.

Performance Analysis of the Decentralized Eigendecomposition and ESPRIT Algorithm

Science.gov (United States)

Suleiman, Wassim; Pesavento, Marius; Zoubir, Abdelhak M.

2016-05-01

In this paper, we consider performance analysis of the decentralized power method for the eigendecomposition of the sample covariance matrix based on the averaging consensus protocol. An analytical expression of the second order statistics of the eigenvectors obtained from the decentralized power method which is required for computing the mean square error (MSE) of subspace-based estimators is presented. We show that the decentralized power method is not an asymptotically consistent estimator of the eigenvectors of the true measurement covariance matrix unless the averaging consensus protocol is carried out over an infinitely large number of iterations. Moreover, we introduce the decentralized ESPRIT algorithm which yields fully decentralized direction-of-arrival (DOA) estimates. Based on the performance analysis of the decentralized power method, we derive an analytical expression of the MSE of DOA estimators using the decentralized ESPRIT algorithm. The validity of our asymptotic results is demonstrated by simulations.

Information Retrieval Research and ESPRIT.

Science.gov (United States)

Smeaton, Alan F.

1987-01-01

Describes the European Strategic Programme of Research and Development in Information Technology (ESPRIT), and its five programs: advanced microelectronics, software technology, advanced information processing, office systems, and computer integrated manufacturing. The emphasis on logic programming and ESPRIT as the European response to the…

Identification of Combined Power Quality Disturbances Using Singular Value Decomposition (SVD and Total Least Squares-Estimation of Signal Parameters via Rotational Invariance Techniques (TLS-ESPRIT

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Huaishuo Xiao

2017-11-01

Full Text Available In order to identify various kinds of combined power quality disturbances, the singular value decomposition (SVD and the improved total least squares-estimation of signal parameters via rotational invariance techniques (TLS-ESPRIT are combined as the basis of disturbance identification in this paper. SVD is applied to identify the catastrophe points of disturbance intervals, based on which the disturbance intervals are segmented. Then the improved TLS-ESPRIT optimized by singular value norm method is used to analyze each data segment, and extract the amplitude, frequency, attenuation coefficient and initial phase of various kinds of disturbances. Multi-group combined disturbance test signals are constructed by MATLAB and the proposed method is also tested by the measured data of IEEE Power and Energy Society (PES Database. The test results show that the new method proposed has a relatively higher accuracy than conventional TLS-ESPRIT, which could be used in the identification of measured data.

Two-dimensional Fast ESPRIT Algorithm for Linear Array SAR Imaging

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Zhao Yi-chao

2015-10-01

Full Text Available The linear array Synthetic Aperture Radar (SAR system is a popular research tool, because it can realize three-dimensional imaging. However, owning to limitations of the aircraft platform and actual conditions, resolution improvement is difficult in cross-track and along-track directions. In this study, a twodimensional fast Estimation of Signal Parameters by Rotational Invariance Technique (ESPRIT algorithm for linear array SAR imaging is proposed to overcome these limitations. This approach combines the Gerschgorin disks method and the ESPRIT algorithm to estimate the positions of scatterers in cross and along-rack directions. Moreover, the reflectivity of scatterers is obtained by a modified pairing method based on “region growing”, replacing the least-squares method. The simulation results demonstrate the applicability of the algorithm with high resolution, quick calculation, and good real-time response.

Early experience with the cochlear ESPrit ear-level speech processor in children.

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Totten, C; Cope, Y; McCormick, B

2000-12-01

The ESPrit ear-level speech processor has recently become available in the United Kingdom for use with the Nucleus CI24M multichannel cochlear implant. We report on the use of this ear-level processor with 6 children, ages 8 to 15 years. In this study, all patients were initially fitted with the SPrint body-worn processor, this being a prerequisite for programming the ESPrit. Five of the children were fitted successfully with the ESPrit and are using their devices consistently. The results show that patient experience with the ESPrit has been favorable, although there have been some device and programming difficulties. Aided threshold measures show that the ESPrit processor performs at least as well as the SPrint processor, with a trend toward improved aided thresholds for the ESPrit processor compared with the SPrint processor. Further study of the functional benefit of both of these devices may confirm these potential gains. The ESPrit device currently has a disadvantage for children in that it does not support FM radio hearing aid use. Finally, caution is advised in the fitting of the ESPrit in very young children or inexperienced listeners, because of difficulties in monitoring device function.

Contre l’esprit.

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Bernard Andrieu

2004-04-01

Full Text Available Notre recherche consiste à retrouver, sous la partie visible des sciences cognitives, la partie invisible toujours active qui les fonde c'est-à-dire les nœuds liant à propos du cerveau-corps-esprit la médecine, la psychologie, la philosophie et la psychiatrie. Une certaine histoire philosophique de la psychologie voudrait imposer la thèse d'une indépendance de l'esprit par rapport au corps comme de la psychologie par rapport à la physiologie, la biologie, la neurologie ou encore la génétique. Pourtant l’étude des troubles neurologiques, des neuropathies du développement des cerveaux de l’enfant prématuré, des psychopathologies des affects et des lésions, dont le XIXe siècle avait constitué ces modèles, se poursuivent aujourd’hui pour maintenir l’interrogation sur la relation esprit-cerveau-corps.Our research consists in finding, beneath the visible part of cognitive sciences, the always active invisible part which founds them, that is to say the knots about the brain-body-mind linking medicine, psychology, philosophy and psychiatry together. Some philosophical history of psychology tries to impose the thesis of an independence of the mind from the body as well as of psychology from physiology, biology, neurology or genetics. Yet, the study of neurological troubles, of neuropathies of the development of the premature child's brain, of psychopathies of affects and lesions, from which the XIXth century had constituted models, is still going on today, to keep questioning about the relation mind-brain-body.

Implementation of ESPRIT Algorithm on GPS TEC for Percussive Signatures of Earthquakes in Ionosphere

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Kiran, Uday; Koteswara Rao, S.; Ramesh, K. S.

2017-01-01

As Global Positioning System is very effective mechanism to find out the disturbances in Ionosphere during the solar events. Spectral estimation of the ionospheric total electron content perturbations leads to better interpretation of their source mechanisms. Seismo-ionospheric perturbations of an earthquake occurred at 12th December 2013 was considered in the present work. Estimation of signal parameters via rotational in variance technique (ESPRIT) is implemented on the vertical total electron content data. It was clearly observed that during disturbance the power spectral density of the dominant frequency had reduced to -2.487 dB from 7.841 dB. The application of ESPRIT algorithm on seismic perturbations in GPS TEC has found the dominant frequency in the spectrum and new frequency present at the time of perturbations

An ESPRIT-Based Approach for 2-D Localization of Incoherently Distributed Sources in Massive MIMO Systems

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Hu, Anzhong; Lv, Tiejun; Gao, Hui; Zhang, Zhang; Yang, Shaoshi

2014-10-01

In this paper, an approach of estimating signal parameters via rotational invariance technique (ESPRIT) is proposed for two-dimensional (2-D) localization of incoherently distributed (ID) sources in large-scale/massive multiple-input multiple-output (MIMO) systems. The traditional ESPRIT-based methods are valid only for one-dimensional (1-D) localization of the ID sources. By contrast, in the proposed approach the signal subspace is constructed for estimating the nominal azimuth and elevation direction-of-arrivals and the angular spreads. The proposed estimator enjoys closed-form expressions and hence it bypasses the searching over the entire feasible field. Therefore, it imposes significantly lower computational complexity than the conventional 2-D estimation approaches. Our analysis shows that the estimation performance of the proposed approach improves when the large-scale/massive MIMO systems are employed. The approximate Cram\\'{e}r-Rao bound of the proposed estimator for the 2-D localization is also derived. Numerical results demonstrate that albeit the proposed estimation method is comparable with the traditional 2-D estimators in terms of performance, it benefits from a remarkably lower computational complexity.

R -Dimensional ESPRIT-Type Algorithms for Strictly Second-Order Non-Circular Sources and Their Performance Analysis

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Steinwandt, Jens; Roemer, Florian; Haardt, Martin; Galdo, Giovanni Del

2014-09-01

High-resolution parameter estimation algorithms designed to exploit the prior knowledge about incident signals from strictly second-order (SO) non-circular (NC) sources allow for a lower estimation error and can resolve twice as many sources. In this paper, we derive the R-D NC Standard ESPRIT and the R-D NC Unitary ESPRIT algorithms that provide a significantly better performance compared to their original versions for arbitrary source signals. They are applicable to shift-invariant R-D antenna arrays and do not require a centrosymmetric array structure. Moreover, we present a first-order asymptotic performance analysis of the proposed algorithms, which is based on the error in the signal subspace estimate arising from the noise perturbation. The derived expressions for the resulting parameter estimation error are explicit in the noise realizations and asymptotic in the effective signal-to-noise ratio (SNR), i.e., the results become exact for either high SNRs or a large sample size. We also provide mean squared error (MSE) expressions, where only the assumptions of a zero mean and finite SO moments of the noise are required, but no assumptions about its statistics are necessary. As a main result, we analytically prove that the asymptotic performance of both R-D NC ESPRIT-type algorithms is identical in the high effective SNR regime. Finally, a case study shows that no improvement from strictly non-circular sources can be achieved in the special case of a single source.

[A multicentre comparative study of the ESPrit and the Nucleus 22].

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Berger, K; Bagus, H; Michels, H; Roth, J; Voss, B; Klenzner, T

2006-05-01

Cochlear implant recipients often report additional difficulty in comprehension of speech in noisy conditions and of softly spoken speech. The aim of this clinical study was to evaluate and compare the performance advantages offered by the ear level ESPrit 3G for experienced Nucleus Mini 22 cochlear implantees. Twenty-eight German-speaking implanted subjects, who had had experience with either the Spectra 22 or the ESPrit 22 for at least 6 months, were evaluated with their current processor and the ESPrit 3G (on microphone, M, and whisper, W, settings) following a 4-week trial. Freiburger monosyllabic words (FMW) were used at soft and conversational levels in quiet conditions and Oldenburger sentences (OLSA) were used in noisy conditions to compare performance. Subjective impressions of sound quality and user aspects were evaluated and combined with data from 31 English-speaking subjects from a parallel study. In comparison to the previously worn processor, statistically significantly superior performance (pESPrit 3G was preferred by 86% of subjects (51/59). The ESPrit 3G for Nucleus 22 users has the potential to further improve speech understanding in quiet conditions at soft intensity levels and also in noisy conditions at conversational levels relative to the currently worn speech processor, the Spectra 22 or the ESPrit 22, for the majority of subjects. Subjectively, together with the improvement in sound quality, the majority of subjects also reported improved ease of use and wearer comfort.

Esprit: A Humanities Magazine.

Science.gov (United States)

Parker, Donald G.; Capella, Barry John

In March 1984, the first issue of "Esprit," a semi-annual humanities magazine for the 56 two-year colleges in New York State, was published. The magazine seeks to confront the apparent decline of student interest in the humanities, community doubts about the relevance of the humanities, and the seeming indifference to the special truths…

Zopár úvah o dôvtipe a intuícii (Several Considerations on Esprit and Intuition

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Renáta Kišoňová

2008-06-01

Full Text Available This article treats of an esprit and an intuition. What is the role of the esprit in the cognize? In common use means an esprit fast, automatic fixing in a given aspect. The problem of the esprit is related with the problem of the understanding of jokes, riddles, or poetical metaphors. It is also connected with the mathematical cognizance or "sight" in geometry. The speech analyzes several chosen thinkers which attended to enquiries of the esprit or the intuition, e.g. I. Kant, L. Wittgenstein and H. Bergson.

Esprit HR mattress cover in pressure ulcer prevention.

Science.gov (United States)

Khoulowa, J

Modern mattresses provide soft dense foam, which permits the redistribution of pressure on the patient over a wider area - away from bony prominences where pressure ulcers usually occur. The material used in producing multistretch covers for the new mattresses had a tendency to delaminate as a result of a combination of heat, moisture and inappropriate cleansing techniques causing the water barriers to fall. In partnership with York Health NHS Trust and the material manufacturer, STM Healthcare produced a mattress cover (Esprit HR) which was able to withstand higher pressure from heat and moisture and greatly extended the life expectancy of the Esprit HR mattress.

Performance Analysis of Multi-Dimensional ESPRIT-Type Algorithms for Arbitrary and Strictly Non-Circular Sources With Spatial Smoothing

Science.gov (United States)

Steinwandt, Jens; Roemer, Florian; Haardt, Martin; Galdo, Giovanni Del

2017-05-01

Spatial smoothing is a widely used preprocessing scheme to improve the performance of high-resolution parameter estimation algorithms in case of coherent signals or if only a small number of snapshots is available. In this paper, we present a first-order performance analysis of the spatially smoothed versions of R-D Standard ESPRIT and R-D Unitary ESPRIT for sources with arbitrary signal constellations as well as R-D NC Standard ESPRIT and R-D NC Unitary ESPRIT for strictly second-order (SO) non-circular (NC) sources. The derived expressions are asymptotic in the effective signal-to-noise ratio (SNR), i.e., the approximations become exact for either high SNRs or a large sample size. Moreover, no assumptions on the noise statistics are required apart from a zero-mean and finite SO moments. We show that both R-D NC ESPRIT-type algorithms with spatial smoothing perform asymptotically identical in the high effective SNR regime. Generally, the performance of spatial smoothing based algorithms depends on the number of subarrays, which is a design parameter and needs to be chosen beforehand. In order to gain more insights into the optimal choice of the number of subarrays, we simplify the derived analytical R-D mean square error (MSE) expressions for the special case of a single source. The obtained MSE expression explicitly depends on the number of subarrays in each dimension, which allows us to analytically find the optimal number of subarrays for spatial smoothing. Based on this result, we additionally derive the maximum asymptotic gain from spatial smoothing and explicitly compute the asymptotic efficiency for this special case. All the analytical results are verified by simulations.

2-D unitary ESPRIT-like direction-of-arrival (DOA) estimation for coherent signals with a uniform rectangular array.

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Ren, Shiwei; Ma, Xiaochuan; Yan, Shefeng; Hao, Chengpeng

2013-03-28

A unitary transformation-based algorithm is proposed for two-dimensional (2-D) direction-of-arrival (DOA) estimation of coherent signals. The problem is solved by reorganizing the covariance matrix into a block Hankel one for decorrelation first and then reconstructing a new matrix to facilitate the unitary transformation. By multiplying unitary matrices, eigenvalue decomposition and singular value decomposition are both transformed into real-valued, so that the computational complexity can be reduced significantly. In addition, a fast and computationally attractive realization of the 2-D unitary transformation is given by making a Kronecker product of the 1-D matrices. Compared with the existing 2-D algorithms, our scheme is more efficient in computation and less restrictive on the array geometry. The processing of the received data matrix before unitary transformation combines the estimation of signal parameters via rotational invariance techniques (ESPRIT)-Like method and the forward-backward averaging, which can decorrelate the impinging signalsmore thoroughly. Simulation results and computational order analysis are presented to verify the validity and effectiveness of the proposed algorithm.

Joint angle and Doppler frequency estimation of coherent targets in monostatic MIMO radar

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Cao, Renzheng; Zhang, Xiaofei

2015-05-01

This paper discusses the problem of joint direction of arrival (DOA) and Doppler frequency estimation of coherent targets in a monostatic multiple-input multiple-output radar. In the proposed algorithm, we perform a reduced dimension (RD) transformation on the received signal first and then use forward spatial smoothing (FSS) technique to decorrelate the coherence and obtain joint estimation of DOA and Doppler frequency by exploiting the estimation of signal parameters via rotational invariance techniques (ESPRIT) algorithm. The joint estimated parameters of the proposed RD-FSS-ESPRIT are automatically paired. Compared with the conventional FSS-ESPRIT algorithm, our RD-FSS-ESPRIT algorithm has much lower complexity and better estimation performance of both DOA and frequency. The variance of the estimation error and the Cramer-Rao Bound of the DOA and frequency estimation are derived. Simulation results show the effectiveness and improvement of our algorithm.

Building esprit de corps: learning to better navigate between "my" patient and "our" patient.

Science.gov (United States)

DeRenzo, Evan G; Schwartz, Jack

2010-01-01

Excellence in the care of hospital patients, particularly those in an intensive care unit, reflects esprit de corps among the care team. Esprit de corps depends on a delicate balance; each clinician must preserve a sense of personal responsibility for "my" patient and yet participate in the collaborative work essential to the care of "our" patient. A harmful imbalance occurs when a physician demands total control of the decision-making process, especially concerning end-of-life treatment options. Although emotional factors may push a physician to claim decision-making exclusivity, compounded by a legal framework that overemphasizes individual responsibility, esprit de corps can be preserved through timely communication among clinicians and a recognition that optimal care for "my" patient requires effective team practice.

A formação do esprit de Sion - Formation of sion`s spirit

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Angela Xavier de Brito

2011-03-01

Full Text Available Resumo A exemplo dos estabelecimentos de elite, Sion exerce sobre suas alunas um efeito de ordenação e de consagração, que tem por objetivo formar um grupo à parte, que faz corpo com a instituição. A "cultura escolar católica de tradição francesa" que anima as instituições femininas de ensino secundário no Brasil, em particular o Colégio Notre Dame de Sion, desenvolve em suas alunas um espírito de corpo específico, resultado de uma socialização conduzida num cotidiano altamente ritualizado. O presente artigo trata justamente de analisar as maneiras pelas quais se forma tal espírito de corpo. O esprit de Sion, espírito de corpo específico a Sion, vai assim ser formado através de rituais de identidade, rituais morais e rituais ligados à religião.Esse esprit de Sion vai conferir às alunas umhabitus, cujas estruturas estruturantes vão acompanhá-las até o fim da vida, contribuindo a assentar seu capital social, fazendo com que sejam reconhecidas em sociedade como enfants de Sion e se reconheçam entre si. Palavras-chave: cultura escolar católica de tradição francesa;espírito de corpo; enfants de Sion; esprit de Sion; rituais.   FORMATION OF SION`S SPIRIT Abstract Like elite’s establishments, Sion exerts on his/her female student’s ordinance and consecration effect with the objective to shape a distinctive group which becomes part of the institution body.“ Traditional French Catholic school culture” which liven up female high school in Brazil, particularly Colégio Notre Dame de Sion, develops in their female students a specific body spirit, resulting from socialization, conducted in highly ritualized daily routines. This article deals with analyzing the ways by which such body spirit is shaped, the esprit of Sion, spirit of body, specifically of Sion. Thus, it will be shaped through identity rituals, moral rituals and rituals related to religion. This Sion’s esprit will confer to classes a habitus whose

Hiérarchie des esprits et esprit fort : le discours médical

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Isabelle Moreau

2010-05-01

Full Text Available L’esprit fort a-t-il un sexe au début de l’époque moderne ? Selon Londa Schiebinger (The Mind has no sex?, 1989 le cartésianisme rompt avec la tradition médicale en rendant impossible la liaison entre sexe et tempérament. En témoigne notamment le cartésien Poullain de la Barre et son livre De l’égalité des deux sexes, publié en 1673. C’est à la lumière de cette thèse que je voudrais évaluer la position des libertins érudits, et ainsi aborder la question du genre masculin, dans sa relation supposée privilégiée à l’incrédulité et au rejet des superstitions. Pour La Mothe Le Vayer, Naudé ou encore Cyrano, en effet, il n’existe pas de raison universelle « asexuée ». Ces libertins rejettent le dualisme cartésien et disqualifient la notion même de sens commun, pour mieux promouvoir une faculté de bien juger ou « Ingenium », directement héritée de Charron. Pour comprendre la masculinité de l’esprit fort, il faut ainsi revenir aux origines médicales de la hiérarchie entre les esprits, construite à partir de l’ancienne théorie humorale et tempéramentale héritée de Hippocrate, Aristote et Galien, retravaillée par Huarte en 1575, reprise ensuite par Charron et par sa postérité libertine. En revenant sur les discours médicaux et philosophiques qui construisent la masculinité de l’esprit fort, je montrerai comment cet idéal se construit sur un modèle de masculinité monologique (certes capable de degrés et de variations, plutôt que par opposition au féminin.Did the mind have a gender during the Early Modern period? According to Londa Schiebinger (The Mind Has No Sex?, 1989, Cartesian philosophy caused an abrupt change within the medical tradition by rendering the link between gender and temperament obsolete. Poullain de la Barre’s On the Equality of the Sexes, published in 1673, is a good example of this shift. It is in the light of this thesis that I intend to assess the Libertine

ESPRIT: Exercise Sensing and Pose Recovery Inference Tool, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — We propose to develop ESPRIT: an Exercise Sensing and Pose Recovery Inference Tool, in support of NASA's effort in developing crew exercise technologies for...

Regulatory approvals in a large multinational clinical trial: the ESPRIT experience.

Science.gov (United States)

McNay, Laura A; Tavel, Jorge A; Oseekey, Karen; McDermott, Cathy M; Mollerup, David; Bebchuk, Judith D

2002-02-01

While accepted as serving an important function to safeguard human subjects, the process of obtaining regulatory approvals to conduct clinical trials is generally regarded as cumbersome and time-consuming. For large multinational trials, U.S. federally sponsored human subject research abroad involves specific U.S. regulatory requirements, in addition to those of the host country, that act as further hurdles. These requirements may include obtaining an Assurance of Protection for Human Subjects from the Office of Human Research Protection of the U.S. Department of Health and Human Services, maintaining specific Ethics Committee/Institutional Review Board (EC/IRB) composition, and incorporating mandated elements in informed consents, all of which may differ from local policies and guidelines. Specific examples of issues that led to delays in regulatory approvals for sites participating in the multinational clinical trial entitled Evaluation of Subcutaneous Proleukin in a Randomized International Trial (ESPRIT) are presented here. While the goal of these requirements is to protect the rights and welfare of human subjects, they may create substantial delays and engender resentment over the notion of lack of respect for individual country sovereignty. Substudies within ESPRIT have been undertaken to obtain feedback from EC/IRB chairpersons, site personnel responsible for processing the required assurances, ESPRIT investigators, and study participants regarding aspects of current U.S. regulatory requirements related to human subject protection and ethical issues in multinational research. The purpose of these substudies is to compare the attitudes and experiences across countries regarding important ethical issues associated with conducting ESPRIT. One objective of the substudies is to gather additional insight to the impact of U.S. regulatory processes. Another is to help to inform the debate about how to best maximize the rights and welfare of clinical trial

The ESPRIT project CAFE : high security digital payment systems

NARCIS (Netherlands)

Boly, J.P.; Bosselaers, A.; Cramer, R.; Michelsen, R.; Mjølsnes, S.F.; Muller, F.; Pedersen, T.P.; Pfitzmann, B.; Rooij, de P.; Schoenmakers, B.; Schunter, M.; Vallée, L.; Waidner, M.; Gollmann, D.

1994-01-01

CAFE (“Conditional Access for Europe”) is an ongoing project in the European Community's ESPRIT program. The goal of CAFE is to develop innovative systems for conditional access, and in particular, digital payment systems. An important aspect of CAFE is high security of all parties concerned, with

ESPRIT Project 6457: Interoperability of Standards for Robotics in CIME

DEFF Research Database (Denmark)

Haenisch, Jorchen; Kroszynski, Uri; Ludwig, Arnold

The groving need for accurate information about manufacturing data (models of robots and other mechanisms)in diverse industrial applications has initiated ESPRIT Project 6457 InterRob.This InterRob "Specification of a STEP Based Reference Model for Exchange of Robotics Models" act as a basis...

Intra- and intersubject comparison of cochlear implant systems using the Esprit and the Tempo+ behind-the-ear speech processor.

Science.gov (United States)

Kompis, Martin; Jenk, Martin; Vischer, Mattheus W; Seifert, Eberhard; Häusler, Rudolf

2002-12-01

A patient with bilateral profound deafness was implanted with a Nucleus CI24M cochlear implant (CI) and used an Esprit behind-the-ear (BTE) speech processor. Thirteen months later, the implant had to be removed because of a cholesteatoma. As the same electrode could not be reinserted, a Medel combi40s CI was implanted in the same ear, and the patient used a Tempo+ BTE processor. After 1 year of use of the Combi40s/Tempo+ system, speech recognition was better and was rated better subjectively than with the CI24M/Esprit system. Speech recognition and subjective ratings were also assessed for two matched groups of nine CI users each, using either an Esprit or a Tempo+ processor. On average, speech recognition scores were higher for the group of Tempo+ users, but the difference was not statistically significant. Users of the Esprit processors rated their device higher in terms of cosmetic appearance and comfort of wearing.

Was Pierre Duhem an Esprit de finesse?

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Víctor Manuel Hernández

2017-06-01

Full Text Available Although Pierre Duhem is well known for his conventionalist outlook and, in particular, for his critique of crucial experiments outlined in his thesis on the empirical indeterminacy of theory, he also contributed to the scholarship on the psychological profiles of scientists by revising Pascal’s famous distinction between the subtle mind and the geometric mind (esprits fins and esprits géométriques. For Duhem, the ideal scientist is the one who combines the defining qualities of both types of intellect. As a physicist, Duhem made important theoretical contributions to the field of thermodynamics as well as to the then-nascent physical chemistry. Due to his rejection of atomism and his unrelenting critique of Maxwell’s electrodynamics, however, in his later years, Duhem’s work was surpassed and abandoned by the dominant tendencies of physics of the time. In this essay, I will discuss whether Duhem himself can be understood through the lens of his own account of the scientist’s psychological profile. More specifically, I examine whether the subtle mind – to which he seems to assign greater cognitive value – in fact plays a key role in Duhem’s critique of the English School (école anglaise, or if his preference for the axiomatic structure of theoretical physics shows a greater affinity with the geometric mind.

Genetic algorithm-based improved DOA estimation using fourth-order cumulants

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Ahmed, Ammar; Tufail, Muhammad

2017-05-01

Genetic algorithm (GA)-based direction of arrival (DOA) estimation is proposed using fourth-order cumulants (FOC) and ESPRIT principle which results in Multiple Invariance Cumulant ESPRIT algorithm. In the existing FOC ESPRIT formulations, only one invariance is utilised to estimate DOAs. The unused multiple invariances (MIs) must be exploited simultaneously in order to improve the estimation accuracy. In this paper, a fitness function based on a carefully designed cumulant matrix is developed which incorporates MIs present in the sensor array. Better DOA estimation can be achieved by minimising this fitness function. Moreover, the effectiveness of Newton's method as well as GA for this optimisation problem has been illustrated. Simulation results show that the proposed algorithm provides improved estimation accuracy compared to existing algorithms, especially in the case of low SNR, less number of snapshots, closely spaced sources and high signal and noise correlation. Moreover, it is observed that the optimisation using Newton's method is more likely to converge to false local optima resulting in erroneous results. However, GA-based optimisation has been found attractive due to its global optimisation capability.

Corps et esprit : l’identité humaine selon Spinoza

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Lamine Hamlaoui

2005-09-01

Full Text Available Contrairement à Descartes, Spinoza refuse à l’esprit humain et par conséquent à l’homme le statut de substance : l’homme est défini comme l’union de deux modes, un corps et une âme. On ne peut donc plus comme chez Descartes distinguer une identité substantielle, conférée au corps par l’âme, et une identité modale, déterminée par le rapport du corps humain aux autres corps. Ces deux identités sont fondues dans une identité essentielle. L’objet de cet article est de mettre en évidence le statut problématique de cette identité dans l’Éthique. L’esprit humain y est en effet déduit et défini comme l’idée du corps humain, c’est-à-dire le concept que Dieu forme du corps humain. Mais tantôt Spinoza identifie cette idée du corps humain à l’essence de l’esprit humain, tantôt il établit une distinction entre les deux. De même, tantôt en vertu du parallélisme des attributs il identifie l’idée du corps humain à l’idée de l’esprit humain, tantôt il distingue les deux. D’où des tensions qui travaillent le système de l’intérieur.Contrary to Descartes, Spinoza refuses to human mind and therefore to man the status of substance : man is defined as the union of two modes, body and mind. We can’t distinguish, as in Descartes, a substantial identity, conferred to the body by the mind, and a modal identity, determined by the relation between human body and other bodies. Both identities form an essential identity. This paper explains the problematical character of this identity in Spinoza’s Ethic. Human mind is indeed deduced and defined as the idea of human body, namely the concept of human body formed by God. But sometimes Spinoza identifies the idea of human body with the essence of human body, sometimes he makes a distinction between both. In the same way, sometimes he identifies the idea of human body with the idea of human mind, in accordance with parallelism of attributes, sometimes he

Cognition, attention et conscience : la synchronie dans l’esprit

OpenAIRE

Ward, Lawrence

2011-01-01

Professeur à British Columbia University (Vancouver, Canada), invité par l’Assemblée des professeurs à l’initiative des Prs Alain Berthoz et Stanislas Dehaene, a donné en mai 2010, quatre conférences intitulées « Cognition, attention et conscience : la synchronie dans l’esprit »

Catholicisme et bourgeoisie. Retour sur les Origines de l'esprit bourgeois en France de Bernard Groethuysen

OpenAIRE

Maire, Catherine; Hours, Bernard

2008-01-01

Dans le cadre du GDR 2342 « l'esprit moderne en religion (xvie-xxe siècle) », le Centre d'anthropologie religieuse européenne (CARE) avec Catherine Maire et l'Institut d'histoire du christianisme avec Bernard Hours, ont organisé à Lyon, dans les locaux de l'université Jean-Moulin, une table ronde autour du livre de Bernard Groethuysen, Origines de l'esprit bourgeois en France (1927), avec la participation de Philippe Boutry, Louis Châtellier, François Chaubet, Marcel Gauchet, Alain Guéry, Ber...

The influence of different PAST-based subspace trackers on DaPT parameter estimation

Science.gov (United States)

Lechtenberg, M.; Götze, J.

2012-09-01

In the context of parameter estimation, subspace-based methods like ESPRIT have become common. They require a subspace separation e.g. based on eigenvalue/-vector decomposition. In time-varying environments, this can be done by subspace trackers. One class of these is based on the PAST algorithm. Our non-linear parameter estimation algorithm DaPT builds on-top of the ESPRIT algorithm. Evaluation of the different variants of the PAST algorithm shows which variant of the PAST algorithm is worthwhile in the context of frequency estimation.

Estimation of direction of arrival of a moving target using subspace based approaches

Science.gov (United States)

Ghosh, Ripul; Das, Utpal; Akula, Aparna; Kumar, Satish; Sardana, H. K.

2016-05-01

In this work, array processing techniques based on subspace decomposition of signal have been evaluated for estimation of direction of arrival of moving targets using acoustic signatures. Three subspace based approaches - Incoherent Wideband Multiple Signal Classification (IWM), Least Square-Estimation of Signal Parameters via Rotation Invariance Techniques (LS-ESPRIT) and Total Least Square- ESPIRIT (TLS-ESPRIT) are considered. Their performance is compared with conventional time delay estimation (TDE) approaches such as Generalized Cross Correlation (GCC) and Average Square Difference Function (ASDF). Performance evaluation has been conducted on experimentally generated data consisting of acoustic signatures of four different types of civilian vehicles moving in defined geometrical trajectories. Mean absolute error and standard deviation of the DOA estimates w.r.t. ground truth are used as performance evaluation metrics. Lower statistical values of mean error confirm the superiority of subspace based approaches over TDE based techniques. Amongst the compared methods, LS-ESPRIT indicated better performance.

A New Approach to Estimate Forest Parameters Using Dual-Baseline Pol-InSAR Data

Science.gov (United States)

Bai, L.; Hong, W.; Cao, F.; Zhou, Y.

2009-04-01

In POL-InSAR applications using ESPRIT technique, it is assumed that there exist stable scattering centres in the forest. However, the observations in forest severely suffer from volume and temporal decorrelation. The forest scatters are not stable as assumed. The obtained interferometric information is not accurate as expected. Besides, ESPRIT techniques could not identify the interferometric phases corresponding to the ground and the canopy. It provides multiple estimations for the height between two scattering centers due to phase unwrapping. Therefore, estimation errors are introduced to the forest height results. To suppress the two types of errors, we use the dual-baseline POL-InSAR data to estimate forest height. Dual-baseline coherence optimization is applied to obtain interferometric information of stable scattering centers in the forest. From the interferometric phases for different baselines, estimation errors caused by phase unwrapping is solved. Other estimation errors can be suppressed, too. Experiments are done to the ESAR L band POL-InSAR data. Experimental results show the proposed methods provide more accurate forest height than ESPRIT technique.

Direction of Arrival Estimation Accuracy Enhancement via Using Displacement Invariance Technique

Directory of Open Access Journals (Sweden)

Youssef Fayad

2015-01-01

Full Text Available A new algorithm for improving Direction of Arrival Estimation (DOAE accuracy has been carried out. Two contributions are introduced. First, Doppler frequency shift that resulted from the target movement is estimated using the displacement invariance technique (DIT. Second, the effect of Doppler frequency is modeled and incorporated into ESPRIT algorithm in order to increase the estimation accuracy. It is worth mentioning that the subspace approach has been employed into ESPRIT and DIT methods to reduce the computational complexity and the model’s nonlinearity effect. The DOAE accuracy has been verified by closed-form Cramér-Rao bound (CRB. The simulation results of the proposed algorithm are better than those of the previous estimation techniques leading to the estimator performance enhancement.

Cochlear implants: 100 pediatric case conversions from the body worn to the nucleus esprit 22 ear level speech processor.

Science.gov (United States)

Dodd, M C; Nikolopoulos, T P; Totten, C; Cope, Y; O'Donoghue, G M

2005-07-01

To assess performance of Nucleus 22 mini system pediatric users converted from the Spectra 22 body-worn to the ESPrit 22 ear-level speech processor using aided thresholds and speech discrimination measures before and after the conversion. Spectra 22 body-worn speech processor users were chosen using preselection criteria (stable map, ability to report on the quality of the signal, no device problems). The subjects underwent tuning, map conversion, fitting of the ESPrit 22, and aided soundfield threshold and speech discrimination testing. The first 100 consecutive conversions are analyzed in this study. Fifty children (50%) were female, and 50 (50%) were male. The average age at implantation was 4.6 years (median 4.3 years, range 1.7 to 11 years). The average age of fitting the ear level speech processor was 11.1 years (median 11 years, range 6.2 to 18.2 years). Tertiary referral pediatric cochlear implant center in the United Kingdom. Of the 100 fittings attempted, all Spectra 22 maps could to be converted for use in the ESPrit 22. Of these 100 fittings, 44 were straightforward with no adjustment to map parameters being required, and 56 needed rate reductions and other map adjustments to achieve the conversion. The difference of the mean thresholds before and after the conversion did not exceed 2 dB across the frequencies studied (0.5-4 kHz). In 95% of the cases, the differences were less than 9 dB(A). With regard to speech discrimination testing, the mean threshold before the conversion was 53.4 dB and after the conversion 52.7 dB. Of the 100 conversions, only five children stopped using the ESPrit 22 despite fitting being achieved. Conversion from the Spectra 22 body worn to the ESPrit 22 ear level speech processor was found to be feasible in all the 100 cases studied. Only a minority (5%) of children chose not to use the ear level speech processor suggesting that children and parents were satisfied from the conversion.

A ProCoS II Project Final Report: ESPRIT Basic Research project 707

DEFF Research Database (Denmark)

Bowen, J. P.; Hoare, C. A. R.; Langmaack, Hans

1996-01-01

An overview of the research and associated activities of the Europeancollaborative ESPRIT Basic Research ProCoS II project (no. 7071) on``Provably Correct Systems'' which ran from 1992 to 1995 is presented.This was a follow-on project to ProCoS (no. 3104) and ran inparallel with the ProCoS Working...

Blind Direction-of-Arrival Estimation with Uniform Circular Array in Presence of Mutual Coupling

Directory of Open Access Journals (Sweden)

Song Liu

2016-01-01

Full Text Available A blind direction-of-arrival (DOA estimation algorithm based on the estimation of signal parameters via rotational invariance techniques (ESPRIT is proposed for a uniform circular array (UCA when strong electromagnetic mutual coupling is present. First, an updated UCA model with mutual coupling in a discrete Fourier transform (DFT beam space is deduced, and the new manifold matrix is equal to the product of a centrosymmetric diagonal matrix and a Vandermonde-structure matrix. Then we carry out blind DOA estimation through a modified ESPRIT method, thus avoiding the need for spatial angular searching. In addition, two mutual coupling parameter estimation methods are presented after the DOAs have been estimated. Simulation results show that the new algorithm is reliable and effective especially for closely spaced signals.

Les nourritures substantielles du corps et de l’Esprit

Directory of Open Access Journals (Sweden)

Roselyne Roth-Haillote

2006-05-01

Full Text Available Cet article examine, dans un monastère de contemplatives1, de quelles façons s’alternent ou se superposent les nourritures du corps et de l’esprit, fournissant aux épouses du Seigneur une préservation physique et spirituelle pour mieux atteindre la finalité de leur vocation.Taking place in a monastery of contemplative nuns2, this article looks at the various ways of feeding the mind and the body, thus giving the Lord’s wives both a physical and spiritual strengh to reach the highlight of their vocation.

L'esprit de sel science, culture, politique

CERN Document Server

Lévy-Leblond, Jean-Marc

1984-01-01

L'esprit de sel. Activité de recherche, la science est-elle nécessairement productrice de connaissances ? Y a-t-il de nouvelles formes et normes du savoir ? Qu'est la science pour la science ? Activité intellectuelle. la science est-elle aussi une activité culturelle ? La science moderne est-elle dans la culture. est-elle une nouvelle culture - devrait-elle l'être ? Qu'est la science pour la culture ? Activité sociale. la science est liée de façon complexe aux structures économiques et à la conjoncture politique. Quel rôle joue-t-elle, quels conditionnements subit-elle ? Qu'est la science pour la politique ? Voici un ensemble de contributions pour aiguiser ces questions cruciales et décaper les idées reçues.

ESPRIT: an automated, library-based method for mapping and soluble expression of protein domains from challenging targets.

Science.gov (United States)

Yumerefendi, Hayretin; Tarendeau, Franck; Mas, Philippe J; Hart, Darren J

2010-10-01

Expression of sufficient quantities of soluble protein for structural biology and other applications is often a very difficult task, especially when multimilligram quantities are required. In order to improve yield, solubility or crystallisability of a protein, it is common to subclone shorter genetic constructs corresponding to single- or multi-domain fragments. However, it is not always clear where domain boundaries are located, especially when working on novel targets with little or no sequence similarity to other proteins. Several methods have been described employing aspects of directed evolution to the recombinant expression of challenging proteins. These combine the construction of a random library of genetic constructs of a target with a screening or selection process to identify solubly expressing protein fragments. Here we review several datasets from the ESPRIT (Expression of Soluble Proteins by Random Incremental Truncation) technology to provide a view on its capabilities. Firstly, we demonstrate how it functions using the well-characterised NF-kappaB p50 transcription factor as a model system. Secondly, application of ESPRIT to the challenging PB2 subunit of influenza polymerase has led to several novel atomic resolution structures; here we present an overview of the screening phase of that project. Thirdly, analysis of the human kinase TBK1 is presented to show how the ESPRIT technology rapidly addresses the compatibility of challenging targets with the Escherichia coli expression system.

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.

Science.gov (United States)

Cai, Yunpeng; Zheng, Wei; Yao, Jin; Yang, Yujie; Mai, Volker; Mao, Qi; Sun, Yijun

2017-04-01

The rapid development of sequencing technology has led to an explosive accumulation of genomic sequence data. Clustering is often the first step to perform in sequence analysis, and hierarchical clustering is one of the most commonly used approaches for this purpose. However, it is currently computationally expensive to perform hierarchical clustering of extremely large sequence datasets due to its quadratic time and space complexities. In this paper we developed a new algorithm called ESPRIT-Forest for parallel hierarchical clustering of sequences. The algorithm achieves subquadratic time and space complexity and maintains a high clustering accuracy comparable to the standard method. The basic idea is to organize sequences into a pseudo-metric based partitioning tree for sub-linear time searching of nearest neighbors, and then use a new multiple-pair merging criterion to construct clusters in parallel using multiple threads. The new algorithm was tested on the human microbiome project (HMP) dataset, currently one of the largest published microbial 16S rRNA sequence dataset. Our experiment demonstrated that with the power of parallel computing it is now compu- tationally feasible to perform hierarchical clustering analysis of tens of millions of sequences. The software is available at http://www.acsu.buffalo.edu/∼yijunsun/lab/ESPRIT-Forest.html.

Medium intensity oral anticoagulants versus aspirin after cerebral ischaemia of arterial origin (ESPRIT) : a randomised controlled trial

NARCIS (Netherlands)

Halkes, P H A; van Gijn, J; Kappelle, L J; Algra, A; Koudstaal, P J

BACKGROUND: Oral anticoagulants are better than aspirin for secondary prevention after myocardial infarction and after cerebral ischaemia in combination with non-rheumatic atrial fibrillation. The European/Australasian Stroke Prevention in Reversible Ischaemia Trial (ESPRIT) aimed to determine

Medium intensity oral anticoagulants versus aspirin after cerebral ischaemia of arterial origin (ESPRIT): a randomised controlled trial

NARCIS (Netherlands)

Halkes, P. H. A.; van Gijn, J.; Kappelle, L. J.; Koudstaal, P. J.; Algra, A.; Banga, J. D.; Boiten, J.; van der Bom, J. G.; Boon, A. E.; Dippel, D. W. J.; Donders, R. C. J. M.; Eefting, F. D.; Franke, C. L.; Frenken, C. W. G. M.; Frijns, C. J. M.; van Gemert, H. M. A.; de Jaegere, P. P. Th; Kamp, O.; Kwa, V. I. H.; de Leeuw, F.-E.; Linn, F. H. H.; van der Meer, W. K.; Mosterd, A.; Pop, G. A. M.; Raaymakers, T. W. M.; van Schooneveld, M. J.; Stam, J.; Verheugt, F. W. A.; van der Worp, H. B.; Zijlstra, F.; Boekweit, M. P.; van Buuren, M.; Greebe, P.; Mooibroek, G. E.; Slabbers, D. C. V.; Beijer, I. S.; van den Bergh, W. M.; Biessels, G. J.; de Schryver, E. L. L. M.; van Dijk, G. W.; Dorhout-Mees, S. M.; Ferrier, C. H.; Gorter, J. W.; Hofmeijer, J.; Hop, J. W.; Klijn, C. J. M.; Manschot, S. M.; Vermeulen, M.; Foncke, E.; Lucas, C.

2007-01-01

BACKGROUND: Oral anticoagulants are better than aspirin for secondary prevention after myocardial infarction and after cerebral ischaemia in combination with non-rheumatic atrial fibrillation. The European/Australasian Stroke Prevention in Reversible Ischaemia Trial (ESPRIT) aimed to determine

An Esprit Project: A Local Integrated Optical Network

Science.gov (United States)

Rey, J.-C.; Luvison, A.; Maaloe, J.; Toft, Fl.

1986-10-01

The paper describes a fibreoptical wideband local area network, (LION) which is being developed under the European ESPRIT (European Strategic Programme for Research and Development in Information Technology) programme. The consortium consists of Thomson-TITN, CSELT and NKT Elektronik. The network will carry both real-time voice and compressed video traffic, and it will also offer a Transport Service for packet-switched data transmission. The network is composed by a number of subnets operating on 140 Mbit/s and an interconnecting backbone network operating on 565 Mbit/s. In large organisations the total network may span more than 10 miles and it can handle more than 10,000 users. The network will have gateways to ISDN and other public services, and interfaces to host computers and other common resources.

Exercise Sensing and Pose Recovery Inference Tool (ESPRIT) - A Compact Stereo-based Motion Capture Solution For Exercise Monitoring

Science.gov (United States)

Lee, Mun Wai

2015-01-01

Crew exercise is important during long-duration space flight not only for maintaining health and fitness but also for preventing adverse health problems, such as losses in muscle strength and bone density. Monitoring crew exercise via motion capture and kinematic analysis aids understanding of the effects of microgravity on exercise and helps ensure that exercise prescriptions are effective. Intelligent Automation, Inc., has developed ESPRIT to monitor exercise activities, detect body markers, extract image features, and recover three-dimensional (3D) kinematic body poses. The system relies on prior knowledge and modeling of the human body and on advanced statistical inference techniques to achieve robust and accurate motion capture. In Phase I, the company demonstrated motion capture of several exercises, including walking, curling, and dead lifting. Phase II efforts focused on enhancing algorithms and delivering an ESPRIT prototype for testing and demonstration.

Formal methods and tools for the development of distributed and real time systems : Esprit Project 3096 (SPEC)

NARCIS (Netherlands)

Roever, de W.P.; Barringer, H.; Courcoubetis, C.; Gabbay, D.M.; Gerth, R.T.; Jonsson, B.; Pnueli, A.; Reed, M.; Sifakis, J.; Vytopil, J.; Wolper, P.

1990-01-01

The Basic Research Action No. 3096, Formal Methods snd Tools for the Development of Distributed and Real Time Systems, is funded in the Area of Computer Science, under the ESPRIT Programme of the European Community. The coordinating institution is the Department of Computing Science, Eindhoven

A fast and automatically paired 2-D direction-of-arrival estimation with and without estimating the mutual coupling coefficients

Science.gov (United States)

Filik, Tansu; Tuncer, T. Engin

2010-06-01

A new technique is proposed for the solution of pairing problem which is observed when fast algorithms are used for two-dimensional (2-D) direction-of-arrival (DOA) estimation. Proposed method is integrated with array interpolation for efficient use of antenna elements. Two virtual arrays are generated which are positioned accordingly with respect to the real array. ESPRIT algorithm is used by employing both the real and virtual arrays. The eigenvalues of the rotational transformation matrix have the angle information at both magnitude and phase which allows the estimation of azimuth and elevation angles by using closed-form expressions. This idea is used to obtain the paired interpolated ESPRIT algorithm which can be applied for arbitrary arrays when there is no mutual coupling. When there is mutual coupling, two approaches are proposed in order to obtain 2-D paired DOA estimates. These blind methods can be applied for the array geometries which have mutual coupling matrices with a Toeplitz structure. The first approach finds the 2-D paired DOA angles without estimating the mutual coupling coefficients. The second approach estimates the coupling coefficients and iteratively improves both the coupling coefficients and the DOA estimates. It is shown that the proposed techniques solve the pairing problem for uniform circular arrays and effectively estimate the DOA angles in case of unknown mutual coupling.

Bioresorbable Everolimus-Eluting Vascular Scaffold for Patients With Peripheral Artery Disease (ESPRIT I): 2-Year Clinical and Imaging Results.

Science.gov (United States)

Lammer, Johannes; Bosiers, Marc; Deloose, Koen; Schmidt, Andrej; Zeller, Thomas; Wolf, Florian; Lansink, Wouter; Sauguet, Antoine; Vermassen, Frank; Lauwers, Geert; Scheinert, Dierk; Popma, Jeffrey J; McGreevy, Robert; Rapoza, Richard; Schwartz, Lewis B; Jaff, Michael R

2016-06-13

This is the first-in-human study of a drug-eluting bioresorbable vascular scaffold (BVS) for treatment of peripheral artery disease (PAD) involving the external iliac artery (EIA) and superficial femoral artery (SFA). Drug-eluting BVS has shown promise in coronary arteries. The ESPRIT BVS system is a device-drug combination consisting of an everolimus-eluting poly-l-lactide scaffold. Safety and performance were evaluated in 35 subjects with symptomatic claudication. Lesions were located in the SFA (88.6%) and EIA (11.4%). Mean lesion length was 35.7 ± 16.0 mm. The study device was successfully deployed in 100% of cases, without recoil. Procedure-related minor complications were observed in 3 patients (groin hematoma, dissection). Within 2 years there was 1 unrelated death, but no patients in this cohort had an amputation. At 1 and 2 years, the binary restenosis rates were 12.1% and 16.1%, respectively, and target lesion revascularization was performed in 3 of 34 patients (8.8%) and 4 of 32 patients (11.8%), respectively. The ankle brachial index 0.75 ± 0.14 improved from pre-procedure to 0.96 ± 0.16 at 2 years' follow-up. At 2 years, 71.0% of the patients were Rutherford-Becker 0, and 93.5% achieved a maximum walking distance of 1,500 feet. The safety of the ESPRIT BVS was demonstrated with no procedure or device-related deaths or amputations within 2 years. The low occurrence of revascularizations was consistent with duplex-ultrasonography showing sustained patency at 2-years. (A Clinical Evaluation of the Abbott Vascular ESPRIT BVS [Bioresorbable Vascular Scaffold] System [ESPRIT I]; NCT01468974). Copyright © 2016 American College of Cardiology Foundation. Published by Elsevier Inc. All rights reserved.

Power system low frequency oscillation mode estimation using wide area measurement systems

Directory of Open Access Journals (Sweden)

Papia Ray

2017-04-01

Full Text Available Oscillations in power systems are triggered by a wide variety of events. The system damps most of the oscillations, but a few undamped oscillations may remain which may lead to system collapse. Therefore low frequency oscillations inspection is necessary in the context of recent power system operation and control. Ringdown portion of the signal provides rich information of the low frequency oscillatory modes which has been taken into analysis. This paper provides a practical case study in which seven signal processing based techniques i.e. Prony Analysis (PA, Fast Fourier Transform (FFT, S-Transform (ST, Wigner-Ville Distribution (WVD, Estimation of Signal Parameters by Rotational Invariance Technique (ESPRIT, Hilbert-Huang Transform (HHT and Matrix Pencil Method (MPM were presented for estimating the low frequency modes in a given ringdown signal. Preprocessing of the signal is done by detrending. The application of the signal processing techniques is illustrated using actual wide area measurement systems (WAMS data collected from four different Phasor Measurement Unit (PMU i.e. Dadri, Vindyachal, Kanpur and Moga which are located near the recent disturbance event at the Northern Grid of India. Simulation results show that the seven signal processing technique (FFT, PA, ST, WVD, ESPRIT, HHT and MPM estimates two common oscillatory frequency modes (0.2, 0.5 from the raw signal. Thus, these seven techniques provide satisfactory performance in determining small frequency modes of the signal without losing its valuable property. Also a comparative study of the seven signal processing techniques has been carried out in order to find the best one. It was found that FFT and ESPRIT gives exact frequency modes as compared to other techniques, so they are recommended for estimation of low frequency modes. Further investigations were also carried out to estimate low frequency oscillatory mode with another case study of Eastern Interconnect Phasor Project

Comparison of speech perception performance between Sprint/Esprit 3G and Freedom processors in children implanted with nucleus cochlear implants.

Science.gov (United States)

Santarelli, Rosamaria; Magnavita, Vincenzo; De Filippi, Roberta; Ventura, Laura; Genovese, Elisabetta; Arslan, Edoardo

2009-04-01

To compare speech perception performance in children fitted with previous generation Nucleus sound processor, Sprint or Esprit 3G, and the Freedom, the most recently released system from the Cochlear Corporation that features a larger input dynamic range. Prospective intrasubject comparative study. University Medical Center. Seventeen prelingually deafened children who had received the Nucleus 24 cochlear implant and used the Sprint or Esprit 3G sound processor. Cochlear implantation with Cochlear device. Speech perception was evaluated at baseline (Sprint, n = 11; Esprit 3G, n = 6) and after 1 month's experience with the Freedom sound processor. Identification and recognition of disyllabic words and identification of vowels were performed via recorded voice in quiet (70 dB [A]), in the presence of background noise at various levels of signal-to-noise ratio (+10, +5, 0, -5) and at a soft presentation level (60 dB [A]). Consonant identification and recognition of disyllabic words, trisyllabic words, and sentences were evaluated in live voice. Frequency discrimination was measured in a subset of subjects (n = 5) by using an adaptive, 3-interval, 3-alternative, forced-choice procedure. Identification of disyllabic words administered at a soft presentation level showed a significant increase when switching to the Freedom compared with the previously worn processor in children using the Sprint or Esprit 3G. Identification and recognition of disyllabic words in the presence of background noise as well as consonant identification and sentence recognition increased significantly for the Freedom compared with the previously worn device only in children fitted with the Sprint. Frequency discrimination was significantly better when switching to the Freedom compared with the previously worn processor. Serial comparisons revealed that that speech perception performance evaluated in children aged 5 to 15 years was superior with the Freedom than previous generations of Nucleus

A Wavelet-Modified ESPRIT Hybrid Method for Assessment of Spectral Components from 0 to 150 kHz

Directory of Open Access Journals (Sweden)

Luisa Alfieri

2017-01-01

Full Text Available Waveform distortions are an important issue in distribution systems. In particular, the assessment of very wide spectra, that include also components in the 2–150 kHz range, has recently become an issue of great interest. This is due to the increasing presence of high-spectral emission devices like end-user devices and distributed generation systems. This study proposed a new sliding-window wavelet-modified estimation of signal parameters by rotational invariance technique (ESPRIT method, particularly suitable for the spectral analysis of waveforms that have very wide spectra. The method is very accurate and requires reduced computational effort. It can be applied successfully to detect spectral components in the range of 0–150 kHz introduced both by distributed power plants, such as wind and photovoltaic generation systems, and by end-user equipment connected to grids through static converters, such as fluorescent lamps.

ESPRIT: A Method for Defining Soluble Expression Constructs in Poorly Understood Gene Sequences.

Science.gov (United States)

Mas, Philippe J; Hart, Darren J

2017-01-01

Production of soluble, purifiable domains or multi-domain fragments of proteins is a prerequisite for structural biology and other applications. When target sequences are poorly annotated, or when there are few similar sequences available for alignments, identification of domains can be problematic. A method called expression of soluble proteins by random incremental truncation (ESPRIT) addresses this problem by high-throughput automated screening of tens of thousands of enzymatically truncated gene fragments. Rare soluble constructs are identified by experimental screening, and the boundaries revealed by DNA sequencing.

Le(s "corps politique(s" dans L ’Esprit des lois de Montesquieu

Directory of Open Access Journals (Sweden)

Denis de Casabianca

2007-01-01

Full Text Available Cet article cherche à déterminer les usages de l’expression « corps politique » dans L’Esprit des lois, pour préciser le regard que Montesquieu porte sur la réalité politique, et comment il entend poser son questionnement par rapport à la tradition contractualiste et jusnaturaliste. Dans les rapports qui existent entre les différents « corps politiques », se joue l’unité du « corps politique ». La monarchie modérée ne saurait exister sans une bonne composition des puissances.

Estimating Effects of Species Interactions on Populations of Endangered Species.

Science.gov (United States)

Roth, Tobias; Bühler, Christoph; Amrhein, Valentin

2016-04-01

Global change causes community composition to change considerably through time, with ever-new combinations of interacting species. To study the consequences of newly established species interactions, one available source of data could be observational surveys from biodiversity monitoring. However, approaches using observational data would need to account for niche differences between species and for imperfect detection of individuals. To estimate population sizes of interacting species, we extended N-mixture models that were developed to estimate true population sizes in single species. Simulations revealed that our model is able to disentangle direct effects of dominant on subordinate species from indirect effects of dominant species on detection probability of subordinate species. For illustration, we applied our model to data from a Swiss amphibian monitoring program and showed that sizes of expanding water frog populations were negatively related to population sizes of endangered yellow-bellied toads and common midwife toads and partly of natterjack toads. Unlike other studies that analyzed presence and absence of species, our model suggests that the spread of water frogs in Central Europe is one of the reasons for the decline of endangered toad species. Thus, studying population impacts of dominant species on population sizes of endangered species using data from biodiversity monitoring programs should help to inform conservation policy and to decide whether competing species should be subject to population management.

Evaluation of Subcutaneous Proleukin (interleukin-2) in a Randomized International Trial (ESPRIT): geographical and gender differences in the baseline characteristics of participants.

Science.gov (United States)

Pett, S L; Wand, H; Law, M G; Arduino, R; Lopez, J C; Knysz, B; Pereira, L C; Pollack, S; Reiss, P; Tambussi, G

2006-01-01

ESPRIT, is a phase III, open-label, randomized, international clinical trial evaluating the effects of subcutaneous recombinant interleukin-2 (rIL-2) plus antiretroviral therapy (ART) versus ART alone on HIV-disease progression and death in HIV-1-infected individuals with CD4+ T-cells > or =300 cells/microL. To describe the baseline characteristics of participants randomized to ESPRIT overall and by geographic location. Baseline characteristics of randomized participants were summarized by region. 4,150 patients were enrolled in ESPRIT from 254 sites in 25 countries. 41%, 27%, 16%, 11%, and 5% were enrolled in Europe, North America, South America, Asia, and Australia, respectively. The median age was 40 years, 81% were men, and 76%, 11%, and 9% were Caucasian, Asian, and African American or African, respectively. 44% of women enrolled (n = 769) were enrolled in Thailand and Argentina. Overall, 55% and 38% of the cohort acquired HIV through male homosexual and heterosexual contact, respectively. 25% had a prior history of AIDS-defining illness; Pneumocystis jirovecii pneumonia, M. tuberculosis, and esophageal candida were most commonly reported. Median nadir and baseline CD4+ T-cell counts were 199 and 458 cells/muL, respectively. 6% and 13% were hepatitis B or C virus coinfected, respectively. Median duration of antiretroviral therapy (ART) was 4.2 years; the longest median duration was in Australia (5.2 years) and the shortest was in Asia (2.3 years). 17%, 13%, and 69% of participants began ART before 1995, between 1996 and 1997, and from 1998 onward, respectively. 86% used ART from two or more ART classes, with 49% using a protease inhibitor-based regimen and 46% using a nonnucleoside reverse transcriptase inhibitor-based regimen. 78% had plasma HIV RNA below detection (ESPRIT has enrolled a diverse population of HIV-infected individuals including large populations of women and patients of African-American/African and Asian ethnicity often underrepresented in HIV

A low-complexity joint 2D-DOD and 2D-DOA estimation algorithm for MIMO radar with arbitrary arrays

Science.gov (United States)

Chen, Chen; Zhang, Xiaofei

2013-10-01

In this article, we study the problem of four-dimensional angles estimation for bistatic multiple-input multiple-output (MIMO) radar with arbitrary arrays, and propose a joint two-dimensional direction of departure (2D-DOD) and two-dimensional direction of arrival (2D-DOA) estimation algorithm. Our algorithm is to extend the propagator method (PM) for angle estimation in MIMO radar. The proposed algorithm does not require peak searching and eigenvalue decomposition of received signal covariance matrix, because of this, it has low computational complexity. And it can achieve automatic pairing of four-dimensional angles. Furthermore, the proposed algorithm has much better angle estimation performance than interpolated estimation method of signal parameters via rotational invariance techniques (ESPRIT), and has very close angle estimation performance to ESPRIT-like algorithm which has higher computational cost than the proposed algorithm. We also analyze the complexity and angle estimation error of the algorithm, and derive the Cramer-Rao bound (CRB). The simulation results verify the effectiveness and improvement of the proposed algorithm.

Introduction to Psychology and Leadership. Part Nine; Morale and Esprit De Corps. Segments I & II, Volume IX-B.

Science.gov (United States)

Westinghouse Learning Corp., Annapolis, MD.

The ninth volume of the introduction to psychology and leadership course (see the final reports which summarize the development project, EM 010 418, EM 010 419, and EM 010 484) concentrates on morale and esprit de corps and is presented in two documents. Like Volume One (EM 010 420), this document is a self-instructional syndactic text with…

Introduction to Psychology and Leadership. Part Nine; Morale and Esprit De Corps. Content Outline, Terminal and Enabling Objectives.

Science.gov (United States)

Westinghouse Learning Corp., Annapolis, MD.

The content is outlined and the terminal and enabling objectives are provided for a curriculum area on morale and esprit de corps (see EM 010 439, EM 010 440, and EM 010 461), part of an introduction to psychology and leadership course for the United States Naval Academy (see the final reports which summarize the course development project, EM 010…

Introduction to Psychology and Leadership. Part Nine; Morale and Esprit De Corps. Segments I & II, Volume IX-A.

Science.gov (United States)

Westinghouse Learning Corp., Annapolis, MD.

The ninth volume of the introduction to psychology and leadership course (see the final reports which summarize the development project, EM 010 418, EM 010 419, and EM 010 484) concentrates on morale and esprit de corps and is presented in two documents. This document uses an audiotape and panelbook format. EM 010 440 is the second document of the…

An estimate of the number of tropical tree species

Science.gov (United States)

Slik, J. W. Ferry; Arroyo-Rodríguez, Víctor; Aiba, Shin-Ichiro; Alvarez-Loayza, Patricia; Alves, Luciana F.; Ashton, Peter; Balvanera, Patricia; Bastian, Meredith L.; Bellingham, Peter J.; van den Berg, Eduardo; Bernacci, Luis; da Conceição Bispo, Polyanna; Blanc, Lilian; Böhning-Gaese, Katrin; Boeckx, Pascal; Bongers, Frans; Boyle, Brad; Bradford, Matt; Brearley, Francis Q.; Breuer-Ndoundou Hockemba, Mireille; Bunyavejchewin, Sarayudh; Calderado Leal Matos, Darley; Castillo-Santiago, Miguel; Catharino, Eduardo L. M.; Chai, Shauna-Lee; Chen, Yukai; Colwell, Robert K.; Chazdon, Robin L.; Clark, Connie; Clark, David B.; Clark, Deborah A.; Culmsee, Heike; Damas, Kipiro; Dattaraja, Handanakere S.; Dauby, Gilles; Davidar, Priya; DeWalt, Saara J.; Doucet, Jean-Louis; Duque, Alvaro; Durigan, Giselda; Eichhorn, Karl A. O.; Eisenlohr, Pedro V.; Eler, Eduardo; Ewango, Corneille; Farwig, Nina; Feeley, Kenneth J.; Ferreira, Leandro; Field, Richard; de Oliveira Filho, Ary T.; Fletcher, Christine; Forshed, Olle; Franco, Geraldo; Fredriksson, Gabriella; Gillespie, Thomas; Gillet, Jean-François; Amarnath, Giriraj; Griffith, Daniel M.; Grogan, James; Gunatilleke, Nimal; Harris, David; Harrison, Rhett; Hector, Andy; Homeier, Jürgen; Imai, Nobuo; Itoh, Akira; Jansen, Patrick A.; Joly, Carlos A.; de Jong, Bernardus H. J.; Kartawinata, Kuswata; Kearsley, Elizabeth; Kelly, Daniel L.; Kenfack, David; Kessler, Michael; Kitayama, Kanehiro; Kooyman, Robert; Larney, Eileen; Laumonier, Yves; Laurance, Susan; Laurance, William F.; Lawes, Michael J.; do Amaral, Ieda Leao; Letcher, Susan G.; Lindsell, Jeremy; Lu, Xinghui; Mansor, Asyraf; Marjokorpi, Antti; Martin, Emanuel H.; Meilby, Henrik; Melo, Felipe P. L.; Metcalfe, Daniel J.; Medjibe, Vincent P.; Metzger, Jean Paul; Millet, Jerome; Mohandass, D.; Montero, Juan C.; de Morisson Valeriano, Márcio; Mugerwa, Badru; Nagamasu, Hidetoshi; Nilus, Reuben; Ochoa-Gaona, Susana; Onrizal; Page, Navendu; Parolin, Pia; Parren, Marc; Parthasarathy, Narayanaswamy; Paudel, Ekananda; Permana, Andrea; Piedade, Maria T. F.; Pitman, Nigel C. A.; Poorter, Lourens; Poulsen, Axel D.; Poulsen, John; Powers, Jennifer; Prasad, Rama C.; Puyravaud, Jean-Philippe; Razafimahaimodison, Jean-Claude; Reitsma, Jan; dos Santos, João Roberto; Roberto Spironello, Wilson; Romero-Saltos, Hugo; Rovero, Francesco; Rozak, Andes Hamuraby; Ruokolainen, Kalle; Rutishauser, Ervan; Saiter, Felipe; Saner, Philippe; Santos, Braulio A.; Santos, Fernanda; Sarker, Swapan K.; Satdichanh, Manichanh; Schmitt, Christine B.; Schöngart, Jochen; Schulze, Mark; Suganuma, Marcio S.; Sheil, Douglas; da Silva Pinheiro, Eduardo; Sist, Plinio; Stevart, Tariq; Sukumar, Raman; Sun, I.-Fang; Sunderland, Terry; Suresh, H. S.; Suzuki, Eizi; Tabarelli, Marcelo; Tang, Jangwei; Targhetta, Natália; Theilade, Ida; Thomas, Duncan W.; Tchouto, Peguy; Hurtado, Johanna; Valencia, Renato; van Valkenburg, Johan L. C. H.; Van Do, Tran; Vasquez, Rodolfo; Verbeeck, Hans; Adekunle, Victor; Vieira, Simone A.; Webb, Campbell O.; Whitfeld, Timothy; Wich, Serge A.; Williams, John; Wittmann, Florian; Wöll, Hannsjoerg; Yang, Xiaobo; Adou Yao, C. Yves; Yap, Sandra L.; Yoneda, Tsuyoshi; Zahawi, Rakan A.; Zakaria, Rahmad; Zang, Runguo; de Assis, Rafael L.; Garcia Luize, Bruno; Venticinque, Eduardo M.

2015-01-01

The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher’s alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between ∼40,000 and ∼53,000, i.e., at the high end of previous estimates. Contrary to common assumption, the Indo-Pacific region was found to be as species-rich as the Neotropics, with both regions having a minimum of ∼19,000–25,000 tree species. Continental Africa is relatively depauperate with a minimum of ∼4,500–6,000 tree species. Very few species are shared among the African, American, and the Indo-Pacific regions. We provide a methodological framework for estimating species richness in trees that may help refine species richness estimates of tree-dependent taxa. PMID:26034279

Alain Supiot, L’Esprit de Philadelphie. La justice sociale face au marché total

Directory of Open Access Journals (Sweden)

Jean-Luc Metzger

2013-03-01

Full Text Available Les transformations contemporaines qu’ont connues la plupart des pays depuis le début des années 1980 ont donné lieu à des analyses convergentes, pointant le rôle moteur de l’idéologie néolibérale et tout particulièrement de la financiarisation des économies. Complétant ce diagnostic, Alain Supiot propose, dans L’Esprit de Philadelphie, une perspective et des pistes originales pour une conception alternative de la mondialisation, centrée sur la justice sociale et le Droit social. C’est dans c...

Bracken: estimating species abundance in metagenomics data

Directory of Open Access Journals (Sweden)

Jennifer Lu

2017-01-01

Full Text Available Metagenomic experiments attempt to characterize microbial communities using high-throughput DNA sequencing. Identification of the microorganisms in a sample provides information about the genetic profile, population structure, and role of microorganisms within an environment. Until recently, most metagenomics studies focused on high-level characterization at the level of phyla, or alternatively sequenced the 16S ribosomal RNA gene that is present in bacterial species. As the cost of sequencing has fallen, though, metagenomics experiments have increasingly used unbiased shotgun sequencing to capture all the organisms in a sample. This approach requires a method for estimating abundance directly from the raw read data. Here we describe a fast, accurate new method that computes the abundance at the species level using the reads collected in a metagenomics experiment. Bracken (Bayesian Reestimation of Abundance after Classification with KrakEN uses the taxonomic assignments made by Kraken, a very fast read-level classifier, along with information about the genomes themselves to estimate abundance at the species level, the genus level, or above. We demonstrate that Bracken can produce accurate species- and genus-level abundance estimates even when a sample contains multiple near-identical species.

Estimation of base temperatures for nine weed species.

Science.gov (United States)

Steinmaus, S J; Prather, T S; Holt, J S

2000-02-01

Experiments were conducted to test several methods for estimating low temperature thresholds for seed germination. Temperature responses of nine weeds common in annual agroecosystems were assessed in temperature gradient experiments. Species included summer annuals (Amaranthus albus, A. palmeri, Digitaria sanguinalis, Echinochloa crus-galli, Portulaca oleracea, and Setaria glauca), winter annuals (Hirschfeldia incana and Sonchus oleraceus), and Conyza canadensis, which is classified as a summer or winter annual. The temperature below which development ceases (Tbase) was estimated as the x-intercept of four conventional germination rate indices regressed on temperature, by repeated probit analysis, and by a mathematical approach. An overall Tbase estimate for each species was the average across indices weighted by the reciprocal of the variance associated with the estimate. Germination rates increased linearly with temperature between 15 degrees C and 30 degrees C for all species. Consistent estimates of Tbase were obtained for most species using several indices. The most statistically robust and biologically relevant method was the reciprocal time to median germination, which can also be used to estimate other biologically meaningful parameters. The mean Tbase for summer annuals (13.8 degrees C) was higher than that for winter annuals (8.3 degrees C). The two germination response characteristics, Tbase and slope (rate), influence a species' germination behaviour in the field since the germination inhibiting effects of a high Tbase may be offset by the germination promoting effects of a rapid germination response to temperature. Estimates of Tbase may be incorporated into predictive thermal time models to assist weed control practitioners in making management decisions.

Evaluation of Subcutaneous Proleukin (interleukin-2) in a Randomized International Trial (ESPRIT): geographical and gender differences in the baseline characteristics of participants

NARCIS (Netherlands)

Pett, S. L.; Wand, H.; Law, M. G.; Arduino, R.; Lopez, J. C.; Knysz, B.; Pereira, L. C.; Pollack, S.; Reiss, P.; Tambussi, G.

2006-01-01

BACKGROUND: ESPRIT, is a phase III, open-label, randomized, international clinical trial evaluating the effects of subcutaneous recombinant interleukin-2 (rIL-2) plus antiretroviral therapy (ART) versus ART alone on HIV-disease progression and death in HIV-1-infected individuals with CD4+ T-cells >

Medium intensity oral anticoagulants versus aspirin after cerebral ischaemia of arterial origin (ESPRIT): a randomised controlled trial.

Science.gov (United States)

Halkes, P H A; van Gijn, J; Kappelle, L J; Koudstaal, P J; Algra, A

2007-02-01

Oral anticoagulants are better than aspirin for secondary prevention after myocardial infarction and after cerebral ischaemia in combination with non-rheumatic atrial fibrillation. The European/Australasian Stroke Prevention in Reversible Ischaemia Trial (ESPRIT) aimed to determine whether oral anticoagulation with medium intensity is more effective than aspirin in preventing future vascular events in patients with transient ischaemic attack or minor stroke of presumed arterial origin. In this international, multicentre trial, patients were randomly assigned within 6 months after a transient ischaemic attack or minor stroke of presumed arterial origin either anticoagulants (target INR range 2.0-3.0; n=536) or aspirin (30-325 mg daily; n=532). The primary outcome was the composite of death from all vascular causes, non-fatal stroke, non-fatal myocardial infarction, or major bleeding complication, whichever occurred first. In a post hoc analysis anticoagulants were compared with the combination of aspirin and dipyridamole (200 mg twice daily). Treatment was open, but auditing of outcome events was blinded. Primary analysis was by intention to treat. This study is registered as an International Standard Randomised Controlled Trial (number ISRCTN73824458) and with ClinicalTrials.gov (NCT00161070). The anticoagulants versus aspirin comparison of ESPRIT was prematurely ended because ESPRIT reported previously that the combination of aspirin and dipyridamole was more effective than aspirin alone. Mean follow-up was 4.6 years (SD 2.2). The mean achieved INR was 2.57 (SD 0.86). A primary outcome event occurred in 99 (19%) patients on anticoagulants and in 98 (18%) patients on aspirin (hazard ratio [HR] 1.02, 95% CI 0.77-1.35). The HR for ischaemic events was 0.73 (0.52-1.01) and for major bleeding complications 2.56 (1.48-4.43). The HR for the primary outcome event comparing anticoagulants with the combination treatment of aspirin and dipyridamole was 1.31 (0.98-1.75). Oral

Esprit de corps: the possibility for the best care a hospital can provide.

Science.gov (United States)

Quist, Norman

2010-01-01

What is best for the hospitalized patient? How do we increase the prospects that a patient will receive the best care a hospital can provide, and how is this accomplished? It has been argued that what is best for the patient is to be in the care of highly functioning collaborative teams, teams with certain unique qualities, teams that have esprit de corps. But how do we get there? In furtherance of this discussion, the author, in a Quintilian-like spirit, deliberates about "necessity" and "possibility" in what is best for the hospitalized patient and the challenges these teams must navigate: responsibility, accountability, team relationships, leadership, moral distress, dissent, and personal and professional risk.

Introduction to Psychology and Leadership. Part Nine; Morale and Esprit De Corps. Progress Check. Test Item Pool. Segments I & II.

Science.gov (United States)

Westinghouse Learning Corp., Annapolis, MD.

Test items for the introduction to psychology and leadership course (see the final reports which summarize the course development project, EM 010 418, EM 010 419, and EM 010 484) which were compiled as part of the project documentation and which are coordinated with the text-workbook on morale and esprit de corps (EM 010 439, EM 010 440, and EM…

极化敏感L型阵模值约束的多参数联合估计%Multi-Parameters Estimation for L-Shaped Polarization Sensitive Array Using the Modulus Constraint

Institute of Scientific and Technical Information of China (English)

张远芳; 周正; 李会勇

2016-01-01

对于极化敏感 L 型阵列的多参数联合估计问题，采用传统的多重信号分类(MUSIC)算法所需计算量大，采用旋转不变子空间(ESPRIT)算法需要考虑参数配对问题。提出了模值约束下的求根多重信号分类(root-MUSIC)算法，首先利用 L 型阵列中两个相互垂直的线阵构造两子阵接收数据的自相关函数，采用 root-MUSIC 算法进行波达方向角(DOA)估计，然后根据模值约束条件构造代价函数，通过闭合式解得到极化参数估计。该算法与传统 MUSIC 算法相比，大大减少了计算量，同时能够实现参数自动配对，避免了 ESPRIT 算法的不足。计算机仿真结果表明，该算法的角度估计性能与传统 MUSIC 算法接近，优于ESPRIT 算法，且算法收敛速度快。%A large amount of computation is required when using the traditional MUSIC algorithm and the parameter matching problem should be considered when using ESPRIT algorithm for multi-parameters estimation of L-shaped polarization sensitive array.A root-MUSIC algorithm with modulus constraint is pro-posed.This algorithm estimates the DOA and polarization parameters in two separate steps.In step one,the autocorrelation function of the received data from two mutually vertical linear arrays is constructed,and DOA parameter is estimated by root-MUSIC algorithm;in step two,the cost function is constructed according to constraint condition and polarization parameters are obtained with closed-form formulas.Compared with the traditional MUSIC algorithm,the proposed algorithm greatly reduces the amount of calculation.It can realize automatic matching parameters at the same time,which avoids the deficiency of the ESPRIT algorithm.The computer simulation results show that the angle estimation performance of the proposed algorithm is close to traditional MUSIC algorithm,and is better than ESPRIT algorithm.Furthermore,the proposed algorithm has fast convergence speed.

ESPRIT study design and outcomes--a critical appraisal.

Science.gov (United States)

Einhäupl, Karl

2007-02-01

Evidence is needed to guide therapeutic decisions on patients who had ischaemic cerebral events. The recently published European/Australasian Stroke Prevention in Reversible Ischaemia Trial (ESPRIT), an open-label randomised controlled study, compared long-term treatment of patients randomised to aspirin 30-325 mg daily with (n = 1363) or without (n = 1376) dipyridamole 200 mg twice daily. The study found the combination to be superior to aspirin alone (13% vs. 16% events in a composite endpoint of vascular death, non-fatal stroke, non-fatal myocardial infarction, or major bleeding; hazard ratio 0.8; 95% confidence interval 0.66-0.98). In the interpretation of the results, criticism has been raised related to the study design (open-label, change during the study), the study conduct (half of the aspirin patients underdosed, 33% drop-out rate in the combination group, missing information on potential confounders such as protective concomitant medication), and the outcomes (lack of differences in the efficacy outcomes between the intent-to-treat and the on-treatment populations, lack of differences in minor bleedings between treatment groups, borderline statistical significance of primary study endpoint). Further studies are needed to determine the place of aspirin/dipyridamole combinations in the secondary prevention of stroke.

Long-Term Safety and Effectiveness of Adalimumab for Moderate to Severe Psoriasis: Results from 7-Year Interim Analysis of the ESPRIT Registry.

Science.gov (United States)

Menter, Alan; Thaçi, Diamant; Wu, Jashin J; Abramovits, William; Kerdel, Francisco; Arikan, Dilek; Guo, Dianlin; Ganguli, Arijit; Bereswill, Mareike; Camez, Anne; Valdecantos, Wendell C

2017-09-01

ESPRIT (NCT00799877) is an ongoing 10-year international prospective observational registry evaluating the long-term safety and effectiveness of originator adalimumab in routine clinical practice for adult patients with chronic plaque psoriasis. Herein, we report the long-term safety, effectiveness, and patient-reported outcomes (PROs) following adalimumab treatment over the first 7 years of the ESPRIT registry. All treatment-emergent (All-TE) adverse events (AE) since the initial (first ever) dose of adalimumab were assessed. Physician Global Assessment (PGA) and PROs (PROs for US patients only) were evaluated during registry participation. As of 30 November 2015, 6051 patients in the ESPRIT registry were analyzed, representing 23,660.1 patient-years (PY) of overall adalimumab exposure. The incidence rates for All-TE serious AEs, serious infections, and malignancies were 4.4, 1.0, and 1.0 events per 100 PY (E/100PY), respectively. The standardized mortality ratio for TE deaths in the registry was 0.27 (95% CI 0.18-0.38). During the registry's first 7 years, PGA "clear" or "minimal" was achieved by >50% of patients at each annual visit, and among US patients, the mean improvement from baseline in different PROs was maintained. No new safety signals were identified during the first 7 years of the registry, and safety was consistent with the known safety profile of adalimumab. The number of TE deaths was below the expected rate. During the registry's first 7 years, most of the patients remained free of All-TE cardiovascular events, serious infections, and malignancy. As-observed effectiveness of adalimumab and improvements from baseline in PROs were maintained through 7 years of registry participation. Abbvie. ClinicalTrials.gov identifier, NCT00799877.

Mortality in well controlled HIV in the continuous antiretroviral therapy arms of the SMART and ESPRIT trials compared with the general population.

Science.gov (United States)

Rodger, Alison J; Lodwick, Rebecca; Schechter, Mauro; Deeks, Steven; Amin, Janaki; Gilson, Richard; Paredes, Roger; Bakowska, Elzbieta; Engsig, Frederik N; Phillips, Andrew

2013-03-27

Due to the success of antiretroviral therapy (ART), it is relevant to ask whether death rates in optimally treated HIV are higher than the general population. The objective was to compare mortality rates in well controlled HIV-infected adults in the SMART and ESPRIT clinical trials with the general population. Non-IDUs aged 20-70 years from the continuous ART control arms of ESPRIT and SMART were included if the person had both low HIV plasma viral loads (≤400 copies/ml SMART, ≤500 copies/ml ESPRIT) and high CD4(+) T-cell counts (≥350 cells/μl) at any time in the past 6 months. Standardized mortality ratios (SMRs) were calculated by comparing death rates with the Human Mortality Database. Three thousand, two hundred and eighty individuals [665 (20%) women], median age 43 years, contributed 12,357 person-years of follow-up. Sixty-two deaths occurred during follow up. Commonest cause of death was cardiovascular disease (CVD) or sudden death (19, 31%), followed by non-AIDS malignancy (12, 19%). Only two deaths (3%) were AIDS-related. Mortality rate was increased compared with the general population with a CD4(+) cell count between 350 and 499 cells/μl [SMR 1.77, 95% confidence interval (CI) 1.17-2.55]. No evidence for increased mortality was seen with CD4(+) cell counts greater than 500 cells/μl (SMR 1.00, 95% CI 0.69-1.40). In HIV-infected individuals on ART, with a recent undetectable viral load, who maintained or had recovery of CD4(+) cell counts to at least 500 cells/μl, we identified no evidence for a raised risk of death compared with the general population.

Species richness and occupancy estimation in communities subject to temporary emigration

Science.gov (United States)

Kery, M.; Royle, J. Andrew; Plattner, M.; Dorazio, R.M.

2009-01-01

Species richness is the most common biodiversity metric, although typically some species remain unobserved. Therefore, estimates of species richness and related quantities should account for imperfect detectability. Community dynamics can often be represented as superposition of species-specific phenologies (e. g., in taxa with well-defined flight [insects], activity [rodents], or vegetation periods [plants]). We develop a model for such predictably open communities wherein species richness is expressed as the sum over observed and unobserved species of estimated species-specific and site-specific occurrence indicators and where seasonal occurrence is modeled as a species-specific function of time. Our model is a multispecies extension of a multistate model with one unobservable state and represents a parsimonious way of dealing with a widespread form of 'temporary emigration.'' For illustration we use Swiss butterfly monitoring data collected under a robust design (RD); species were recorded on 13 transects during two secondary periods within data, where secondary samples are pooled. The latter model yielded unrealistically high estimates of total community size of 274 species. In contrast, estimates were similar under models applied to RD data with constant (122) or seasonally varying (126) detectability for each species, but the former was more parsimonious and therefore used for inference. Per transect, 6 44 (mean 21.1) species were detected. Species richness estimates averaged 29.3; therefore only 71% (range 32-92%) of all species present were ever detected. In any primary period, 0.4-5.6 species present were overlooked. Detectability varied by species and averaged 0.88 per primary sampling period. Our modeling framework is extremely flexible; extensions such as covariates for the occurrence or detectability of individual species are easy. It should be useful for communities with a predictable form of temporary emigration where rigorous estimation of community

Estimating tree species richness from forest inventory plot data

Science.gov (United States)

Ronald E. McRoberts; Dacia M. Meneguzzo

2007-01-01

Montreal Process Criterion 1, Conservation of Biological Diversity, expresses species diversity in terms of number of forest dependent species. Species richness, defined as the total number of species present, is a common metric for analyzing species diversity. A crucial difficulty in estimating species richness from sample data obtained from sources such as inventory...

ESPRIT: is aspirin plus dipyridamole superior to aspirin alone in TIA or minor stroke patients?

Science.gov (United States)

Rouhl, R P W; Lodder, J

2008-11-01

Transient ischemic attack (TIA) or a (minor) ischemic stroke increases the risk of a recurrent stroke or death. Antiplatelet therapy with aspirin or clopidogrel is, in the absence of a potential cardiac embolic source, common practice to lower this risk. Until recently, adjuvant dipyridamole or low intensity oral anticoagulation were not generally prescribed in secondary prevention. In this article, we will summarize and discuss the published results of the European/Australasian Stroke Prevention in Reversible Ischemia Trial (ESPRIT). In this trial, treatments with anticoagulants, aspirin alone and the combination of aspirin plus dipyridamole were compared, in a multicenter, three-armed, randomized, open-label study in patients with TIA or minor stroke.

ESPRIT: a study concept for a far-infrared interferometer in space

Science.gov (United States)

Wild, W.; de Graauw, Th.; Helmich, F.; Baryshev, A.; Cernicharo, J.; Gao, J. R.; Gunst, A.; Bos, A.; den Herder, J.-W.; Jackson, B.; Koshelets, V.; Langevelde, H.-J.; Maat, P.; Martin-Pintado, J.; Noordam, J.; Roelfsema, P.; Venema, L.; Wesselius, P.; Yagoubov, P.

2008-07-01

In the far-infrared (FIR) / THz regime the angular (and often spectral) resolution of observing facilities is still very restricted despite the fact that this frequency range has become of prime importance for modern astrophysics. ALMA (Atacama Large Millimeter Array) with its superb sensitivity and angular resolution will only cover frequencies up to about 1 THz, while the HIFI instrument for ESA'a Herschel Space Observatory will provide limited angular resolution (10 to 30 arcsec) up to 2 THz. Observations of regions with star and planet formation require extremely high angular resolution as well as frequency resolution in the full THz regime. In order to open these regions for high-resolution astrophysics we present a study concept for a heterodyne space interferometer, ESPRIT (Exploratory Submm Space Radio-Interferometric Telescope). This mission will cover the Terahertz regime inaccessible from the ground and outside the operating range of the James Webb Space Telescope (JWST).

Multiuser Carrier Frequency Offset Estimation for OFDMA Uplink Based on Multi-Antenna

Science.gov (United States)

Zhang, Weile; Wang, Junsong; Yin, Qinye; Feng, Ang

In this letter, a novel method is proposed for carrier-frequency offset (CFO) estimation for multiple users in orthogonal frequency division multiple access (OFDMA) uplink with the generalized carrier assignment scheme (GCAS). The base station (BS) is equipped with multiple antennas, and each user's CFO can be estimated by the ESPRIT-like method that utilizes the rotation invariance of the space-domain snapshot matrix. The method is still effective even in fully loaded system with all subcarriers allocated to users. Simulation results illustrate the high performance of the proposed algorithm.

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

Science.gov (United States)

Hird, Sarah; Kubatko, Laura; Carstens, Bryan

2010-11-01

We describe a method for estimating species trees that relies on replicated subsampling of large data matrices. One application of this method is phylogeographic research, which has long depended on large datasets that sample intensively from the geographic range of the focal species; these datasets allow systematicists to identify cryptic diversity and understand how contemporary and historical landscape forces influence genetic diversity. However, analyzing any large dataset can be computationally difficult, particularly when newly developed methods for species tree estimation are used. Here we explore the use of replicated subsampling, a potential solution to the problem posed by large datasets, with both a simulation study and an empirical analysis. In the simulations, we sample different numbers of alleles and loci, estimate species trees using STEM, and compare the estimated to the actual species tree. Our results indicate that subsampling three alleles per species for eight loci nearly always results in an accurate species tree topology, even in cases where the species tree was characterized by extremely rapid divergence. Even more modest subsampling effort, for example one allele per species and two loci, was more likely than not (>50%) to identify the correct species tree topology, indicating that in nearly all cases, computing the majority-rule consensus tree from replicated subsampling provides a good estimate of topology. These results were supported by estimating the correct species tree topology and reasonable branch lengths for an empirical 10-locus great ape dataset. Copyright © 2010 Elsevier Inc. All rights reserved.

Temporal spectrum of ischemic complications with percutaneous coronary intervention: the ESPRIT experience.

Science.gov (United States)

Cantor, Warren J; Tcheng, James E; Blankenship, James C; O'Shea, J Conor; Pieper, Karen S; Criger, Douglas A; Madan, Mina; Ducas, John; Sheldon, William S; Tannenbaum, Mark A; Smith, Jack E; Kitt, Michael M; Gilchrist, Ian C

2004-09-01

We determined the timing of ischemic complications within 30 days after percutaneous coronary intervention (PCI) in patients enrolled in the Enhanced Suppression of the Platelet IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial. Complications (death, myocardial infarction [MI], target vessel revascularization) occurred in 178 of 2064 patients (8.6%) within 30 days. More than 85% of complications occurred within the 24 hours following randomization, with the greatest risk hazard at 12-18 hours. Unexpectedly, 31% of patients who ultimately met criteria for an endpoint MI within 24 hours of PCI had completely normal CK-MB concentrations at the first 6-hour measurement. There was no rebound increase in events after cessation of eptifibatide. Treatment benefit persisted to 30 days. Post-procedural MI is often not detected until greater than or equal to 12 hours after PCI. Treatment with a glycoprotein IIb/IIIa inhibitor is the only modifiable parameter that reduces the risk for early ischemic complications.

DOA Estimation Based on Real-Valued Cross Correlation Matrix of Coprime Arrays.

Science.gov (United States)

Li, Jianfeng; Wang, Feng; Jiang, Defu

2017-03-20

A fast direction of arrival (DOA) estimation method using a real-valued cross-correlation matrix (CCM) of coprime subarrays is proposed. Firstly, real-valued CCM with extended aperture is constructed to obtain the signal subspaces corresponding to the two subarrays. By analysing the relationship between the two subspaces, DOA estimations from the two subarrays are simultaneously obtained with automatic pairing. Finally, unique DOA is determined based on the common results from the two subarrays. Compared to partial spectral search (PSS) method and estimation of signal parameter via rotational invariance (ESPRIT) based method for coprime arrays, the proposed algorithm has lower complexity but achieves better DOA estimation performance and handles more sources. Simulation results verify the effectiveness of the approach.

USING TAXONOMIC REVISION DATA TO ESTIMATE THE GLOBAL SPECIES RICHNESS AND CHARACTERISTICS OF UNDESCRIBED SPECIES OF DIVING BEETLES (COLEOPTERA: DYTISCIDAE

Directory of Open Access Journals (Sweden)

Viktor Nilsson-Örtman

2010-06-01

Full Text Available Many methods used for estimating species richness are either difficult to use on poorly known taxa or require input data that are laborious and expensive to collect. In this paper we apply a method which takes advantage of the carefully conducted tests of how the described diversity compares to real species richness that are inherent in taxonomic revisions. We analyze the quantitative outcome from such revisions with respect to body size, zoogeographical region and phylogenetic relationship. The best fitting model is used to predict the diversity of unrevised groups if these would have been subject to as rigorous species level hypothesis-testing as the revised groups. The sensitivity of the predictive model to single observations is estimated by bootstrapping over resampled subsets of the original data. The Dytiscidae is with its 4080 described species (end of May 2009 the most diverse group of aquatic beetles and have a world-wide distribution. Extensive taxonomic work has been carried out on the family but still the number of described species increases exponentially in most zoogeographical regions making many commonly used methods of estimation difficult to apply. We provide independent species richness estimates of subsamples for which species richness estimates can be reached through extrapolation and compare these to the species richness estimates obtained through the method using revision data. We estimate there to be 5405 species of dytiscids, a 1.32-fold increase over the present number of described species. The undescribed diversity is likely to be biased towards species with small body size from tropical regions outside of Africa.

Estimating rates of local species extinction, colonization and turnover in animal communities

Science.gov (United States)

Nichols, James D.; Boulinier, T.; Hines, J.E.; Pollock, K.H.; Sauer, J.R.

1998-01-01

Species richness has been identified as a useful state variable for conservation and management purposes. Changes in richness over time provide a basis for predicting and evaluating community responses to management, to natural disturbance, and to changes in factors such as community composition (e.g., the removal of a keystone species). Probabilistic capture-recapture models have been used recently to estimate species richness from species count and presence-absence data. These models do not require the common assumption that all species are detected in sampling efforts. We extend this approach to the development of estimators useful for studying the vital rates responsible for changes in animal communities over time; rates of local species extinction, turnover, and colonization. Our approach to estimation is based on capture-recapture models for closed animal populations that permit heterogeneity in detection probabilities among the different species in the sampled community. We have developed a computer program, COMDYN, to compute many of these estimators and associated bootstrap variances. Analyses using data from the North American Breeding Bird Survey (BBS) suggested that the estimators performed reasonably well. We recommend estimators based on probabilistic modeling for future work on community responses to management efforts as well as on basic questions about community dynamics.

DOA Estimation Based on Real-Valued Cross Correlation Matrix of Coprime Arrays

Directory of Open Access Journals (Sweden)

Jianfeng Li

2017-03-01

Full Text Available A fast direction of arrival (DOA estimation method using a real-valued cross-correlation matrix (CCM of coprime subarrays is proposed. Firstly, real-valued CCM with extended aperture is constructed to obtain the signal subspaces corresponding to the two subarrays. By analysing the relationship between the two subspaces, DOA estimations from the two subarrays are simultaneously obtained with automatic pairing. Finally, unique DOA is determined based on the common results from the two subarrays. Compared to partial spectral search (PSS method and estimation of signal parameter via rotational invariance (ESPRIT based method for coprime arrays, the proposed algorithm has lower complexity but achieves better DOA estimation performance and handles more sources. Simulation results verify the effectiveness of the approach.

The influence of maternal body mass index on fetal weight estimation in twin pregnancy.

LENUS (Irish Health Repository)

Ryan, Helen M

2013-11-08

Sonographic estimation of fetal weight (EFW) is important in the management of high-risk pregnancies. The possibility that increased maternal body mass index (BMI) adversely affects EFW assessments in twin pregnancies is controversial. The aim of this study was to investigate the effect of maternal BMI on the accuracy of EFW assessments in twin gestations prospectively recruited for the ESPRiT (Evaluation of Sonographic Predictors of Restricted growth in Twins) study.

The impact of the species-area relationship on estimates of paleodiversity.

Directory of Open Access Journals (Sweden)

2005-08-01

Full Text Available Estimates of paleodiversity patterns through time have relied on datasets that lump taxonomic occurrences from geographic areas of varying size per interval of time. In essence, such estimates assume that the species-area effect, whereby more species are recorded from larger geographic areas, is negligible for fossil data. We tested this assumption by using the newly developed Miocene Mammal Mapping Project database of western North American fossil mammals and its associated analysis tools to empirically determine the geographic area that contributed to species diversity counts in successive temporal bins. The results indicate that a species-area effect markedly influences counts of fossil species, just as variable spatial sampling influences diversity counts on the modern landscape. Removing this bias suggests some traditionally recognized peaks in paleodiversity are just artifacts of the species-area effect while others stand out as meriting further attention. This discovery means that there is great potential for refining existing time-series estimates of paleodiversity, and for using species-area relationships to more reliably understand the magnitude and timing of such biotically important events as extinction, lineage diversification, and long-term trends in ecological structure.

An Estimate Of The Number Of Tropical Tree Species.

OpenAIRE

Slik, J W Ferry; Arroyo-Rodríguez, Víctor; Aiba, Shin-Ichiro; Alvarez-Loayza, Patricia; Alves, Luciana F; Ashton, Peter; Balvanera, Patricia; Bastian, Meredith L; Bellingham, Peter J; van den Berg, Eduardo; Bernacci, Luis; da Conceição Bispo, Polyanna; Blanc, Lilian; Böhning-Gaese, Katrin; Boeckx, Pascal

2016-01-01

The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher's alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between similar to 40,000 and similar to 53,000...

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

Directory of Open Access Journals (Sweden)

Edwards Scott V

2010-10-01

Full Text Available Abstract Background Several phylogenetic approaches have been developed to estimate species trees from collections of gene trees. However, maximum likelihood approaches for estimating species trees under the coalescent model are limited. Although the likelihood of a species tree under the multispecies coalescent model has already been derived by Rannala and Yang, it can be shown that the maximum likelihood estimate (MLE of the species tree (topology, branch lengths, and population sizes from gene trees under this formula does not exist. In this paper, we develop a pseudo-likelihood function of the species tree to obtain maximum pseudo-likelihood estimates (MPE of species trees, with branch lengths of the species tree in coalescent units. Results We show that the MPE of the species tree is statistically consistent as the number M of genes goes to infinity. In addition, the probability that the MPE of the species tree matches the true species tree converges to 1 at rate O(M -1. The simulation results confirm that the maximum pseudo-likelihood approach is statistically consistent even when the species tree is in the anomaly zone. We applied our method, Maximum Pseudo-likelihood for Estimating Species Trees (MP-EST to a mammal dataset. The four major clades found in the MP-EST tree are consistent with those in the Bayesian concatenation tree. The bootstrap supports for the species tree estimated by the MP-EST method are more reasonable than the posterior probability supports given by the Bayesian concatenation method in reflecting the level of uncertainty in gene trees and controversies over the relationship of four major groups of placental mammals. Conclusions MP-EST can consistently estimate the topology and branch lengths (in coalescent units of the species tree. Although the pseudo-likelihood is derived from coalescent theory, and assumes no gene flow or horizontal gene transfer (HGT, the MP-EST method is robust to a small amount of HGT in the

Bayesian estimation applied to multiple species

International Nuclear Information System (INIS)

Kunz, Martin; Bassett, Bruce A.; Hlozek, Renee A.

2007-01-01

Observed data are often contaminated by undiscovered interlopers, leading to biased parameter estimation. Here we present BEAMS (Bayesian estimation applied to multiple species) which significantly improves on the standard maximum likelihood approach in the case where the probability for each data point being ''pure'' is known. We discuss the application of BEAMS to future type-Ia supernovae (SNIa) surveys, such as LSST, which are projected to deliver over a million supernovae light curves without spectra. The multiband light curves for each candidate will provide a probability of being Ia (pure) but the full sample will be significantly contaminated with other types of supernovae and transients. Given a sample of N supernovae with mean probability, , of being Ia, BEAMS delivers parameter constraints equal to N spectroscopically confirmed SNIa. In addition BEAMS can be simultaneously used to tease apart different families of data and to recover properties of the underlying distributions of those families (e.g. the type-Ibc and II distributions). Hence BEAMS provides a unified classification and parameter estimation methodology which may be useful in a diverse range of problems such as photometric redshift estimation or, indeed, any parameter estimation problem where contamination is an issue

Mesospheric dust and its secondary effects as observed by the ESPRIT payload

Directory of Open Access Journals (Sweden)

O. Havnes

2009-03-01

Full Text Available The dust detector on the ESPRIT rocket detected two extended dust/aerosol layers during the launch on 1 July 2006. The lower layer at height ~81.5–83 km coincided with a strong NLC and PMSE layer. The maximum dust charge density was ~−3.5×109 e m−3 and the dust layer was characterized by a few strong dust layers where the dust charge density at the upper edges changed by factors 2–3 over a distance of ≲10 m, while the same change at their lower edges were much more gradual. The upper edge of this layer is also sharp, with a change in the probe current from zero to IDC=−10−11 A over ~10 m, while the same change at the low edge occurs over ~500 m. The second dust layer at ~85–92 km was in the height range of a comparatively weak PMSE layer and the maximum dust charge density was ~−108 e m−3. This demonstrates that PMSE can be formed even if the ratio of the dust charge density to the electron density P=NdZd /n_e≲0.01. In spite of the dust detector being constructed to reduce possible secondary charging effects from dust impacts, it was found that they were clearly present during the passage through both layers. The measured secondary charging effects confirm recent results that dust in the NLC and PMSE layers can be very effective in producing secondary charges with up to ~50 to 100 electron charges being rubbed off by one impacting large dust particle, if the impact angle is θi≳20–35°. This again lends support to the suggested model for NLC and PMSE dust particles (Havnes and Næsheim, 2007 as a loosely bound water-ice clump interspersed with a considerable number of sub-nanometer-sized meteoric smoke particles, possibly also contaminated with meteoric atomic species.

Mesospheric dust and its secondary effects as observed by the ESPRIT payload

Science.gov (United States)

Havnes, O.; Surdal, L. H.; Philbrick, C. R.

2009-03-01

The dust detector on the ESPRIT rocket detected two extended dust/aerosol layers during the launch on 1 July 2006. The lower layer at height ~81.5-83 km coincided with a strong NLC and PMSE layer. The maximum dust charge density was ~-3.5×109 e m-3 and the dust layer was characterized by a few strong dust layers where the dust charge density at the upper edges changed by factors 2-3 over a distance of ≲10 m, while the same change at their lower edges were much more gradual. The upper edge of this layer is also sharp, with a change in the probe current from zero to IDC=-10-11 A over ~10 m, while the same change at the low edge occurs over ~500 m. The second dust layer at ~85-92 km was in the height range of a comparatively weak PMSE layer and the maximum dust charge density was ~-108 e m-3. This demonstrates that PMSE can be formed even if the ratio of the dust charge density to the electron density P=NdZd /n_e≲0.01. In spite of the dust detector being constructed to reduce possible secondary charging effects from dust impacts, it was found that they were clearly present during the passage through both layers. The measured secondary charging effects confirm recent results that dust in the NLC and PMSE layers can be very effective in producing secondary charges with up to ~50 to 100 electron charges being rubbed off by one impacting large dust particle, if the impact angle is θi≳20-35°. This again lends support to the suggested model for NLC and PMSE dust particles (Havnes and Næsheim, 2007) as a loosely bound water-ice clump interspersed with a considerable number of sub-nanometer-sized meteoric smoke particles, possibly also contaminated with meteoric atomic species.

Multidimensional Rank Reduction Estimator for Parametric MIMO Channel Models

Directory of Open Access Journals (Sweden)

Marius Pesavento

2004-08-01

Full Text Available A novel algebraic method for the simultaneous estimation of MIMO channel parameters from channel sounder measurements is developed. We consider a parametric multipath propagation model with P discrete paths where each path is characterized by its complex path gain, its directions of arrival and departure, time delay, and Doppler shift. This problem is treated as a special case of the multidimensional harmonic retrieval problem. While the well-known ESPRIT-type algorithms exploit shift-invariance between specific partitions of the signal matrix, the rank reduction estimator (RARE algorithm exploits their internal Vandermonde structure. A multidimensional extension of the RARE algorithm is developed, analyzed, and applied to measurement data recorded with the RUSK vector channel sounder in the 2 GHz band.

Aspirin plus dipyridamole versus aspirin alone after cerebral ischaemia of arterial origin (ESPRIT): randomised controlled trial.

Science.gov (United States)

Halkes, P H A; van Gijn, J; Kappelle, L J; Koudstaal, P J; Algra, A

2006-05-20

Results of trials of aspirin and dipyridamole combined versus aspirin alone for the secondary prevention of vascular events after ischaemic stroke of presumed arterial origin are inconsistent. Our aim was to resolve this uncertainty. We did a randomised controlled trial in which we assigned patients to aspirin (30-325 mg daily) with (n=1363) or without (n=1376) dipyridamole (200 mg twice daily) within 6 months of a transient ischaemic attack or minor stroke of presumed arterial origin. Our primary outcome event was the composite of death from all vascular causes, non-fatal stroke, non-fatal myocardial infarction, or major bleeding complication, whichever happened first. Treatment was open, but auditing of outcome events was blinded. Primary analysis was by intention to treat. This study is registered as an International Standard Randomised Controlled Trial (number ISRCTN73824458) and with (NCT00161070). Mean follow-up was 3.5 years (SD 2.0). Median aspirin dose was 75 mg in both treatment groups (range 30-325); extended-release dipyridamole was used by 83% (n=1131) of patients on the combination regimen. Primary outcome events arose in 173 (13%) patients on aspirin and dipyridamole and in 216 (16%) on aspirin alone (hazard ratio 0.80, 95% CI 0.66-0.98; absolute risk reduction 1.0% per year, 95% CI 0.1-1.8). Addition of the ESPRIT data to the meta-analysis of previous trials resulted in an overall risk ratio for the composite of vascular death, stroke, or myocardial infarction of 0.82 (95% CI 0.74-0.91). Patients on aspirin and dipyridamole discontinued trial medication more often than those on aspirin alone (470 vs 184), mainly because of headache. The ESPRIT results, combined with the results of previous trials, provide sufficient evidence to prefer the combination regimen of aspirin plus dipyridamole over aspirin alone as antithrombotic therapy after cerebral ischaemia of arterial origin.

Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives.

Science.gov (United States)

Blair, Jaime E; Coffey, Michael D; Martin, Frank N

2012-01-01

To better understand the evolutionary history of a group of organisms, an accurate estimate of the species phylogeny must be known. Traditionally, gene trees have served as a proxy for the species tree, although it was acknowledged early on that these trees represented different evolutionary processes. Discordances among gene trees and between the gene trees and the species tree are also expected in closely related species that have rapidly diverged, due to processes such as the incomplete sorting of ancestral polymorphisms. Recently, methods have been developed for the explicit estimation of species trees, using information from multilocus gene trees while accommodating heterogeneity among them. Here we have used three distinct approaches to estimate the species tree for five Phytophthora pathogens, including P. infestans, the causal agent of late blight disease in potato and tomato. Our concatenation-based "supergene" approach was unable to resolve relationships even with data from both the nuclear and mitochondrial genomes, and from multiple isolates per species. Our multispecies coalescent approach using both Bayesian and maximum likelihood methods was able to estimate a moderately supported species tree showing a close relationship among P. infestans, P. andina, and P. ipomoeae. The topology of the species tree was also identical to the dominant phylogenetic history estimated in our third approach, Bayesian concordance analysis. Our results support previous suggestions that P. andina is a hybrid species, with P. infestans representing one parental lineage. The other parental lineage is not known, but represents an independent evolutionary lineage more closely related to P. ipomoeae. While all five species likely originated in the New World, further study is needed to determine when and under what conditions this hybridization event may have occurred.

A Methodology for Virtual Enterprise Management – Results from IMS 95001/Esprit 26509 Globeman21 project

DEFF Research Database (Denmark)

Tølle, Martin; Vesterager, Johan; Pedersen, Jens Dahl

2000-01-01

This paper presents results of the recently concluded IMS Globeman21 (Global Manufacturing in the 21st Century, IMS 95001/ESPRIT 26509) project. The results is the Virtual Enterprise Concept, a Virtual Enterprise Framework based upon GERAM (ISO/DIS 15704) and a Methodology for Virtual Enterprise...... management and engineering which is related to the Virtual Enterprise Framework (VEF). Applying the VEF as a basis structure for the Methodology provides a systematic approach for preparation and engineering of virtual enterprises. The Virtual Enterprise Framework opens up the prospect of combining...... experiences in the area of virtual enterprise into an integrated whole enabling researchers or practitioners to focus on subsets of the challenge related to the realisation of the virtual enterprise potentials. In this paper the identification, concept and requirements phases of the methodology are briefly...

Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae).

Science.gov (United States)

Knowles, Lacey L; Klimov, Pavel B

2011-11-01

With the increased availability of multilocus sequence data, the lack of concordance of gene trees estimated for independent loci has focused attention on both the biological processes producing the discord and the methodologies used to estimate phylogenetic relationships. What has emerged is a suite of new analytical tools for phylogenetic inference--species tree approaches. In contrast to traditional phylogenetic methods that are stymied by the idiosyncrasies of gene trees, approaches for estimating species trees explicitly take into account the cause of discord among loci and, in the process, provides a direct estimate of phylogenetic history (i.e. the history of species divergence, not divergence of specific loci). We illustrate the utility of species tree estimates with an analysis of a diverse group of feather mites, the pinnatus species group (genus Proctophyllodes). Discord among four sequenced nuclear loci is consistent with theoretical expectations, given the short time separating speciation events (as evident by short internodes relative to terminal branch lengths in the trees). Nevertheless, many of the relationships are well resolved in a Bayesian estimate of the species tree; the analysis also highlights ambiguous aspects of the phylogeny that require additional loci. The broad utility of species tree approaches is discussed, and specifically, their application to groups with high speciation rates--a history of diversification with particular prevalence in host/parasite systems where species interactions can drive rapid diversification.

Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives.

Directory of Open Access Journals (Sweden)

Jaime E Blair

Full Text Available To better understand the evolutionary history of a group of organisms, an accurate estimate of the species phylogeny must be known. Traditionally, gene trees have served as a proxy for the species tree, although it was acknowledged early on that these trees represented different evolutionary processes. Discordances among gene trees and between the gene trees and the species tree are also expected in closely related species that have rapidly diverged, due to processes such as the incomplete sorting of ancestral polymorphisms. Recently, methods have been developed for the explicit estimation of species trees, using information from multilocus gene trees while accommodating heterogeneity among them. Here we have used three distinct approaches to estimate the species tree for five Phytophthora pathogens, including P. infestans, the causal agent of late blight disease in potato and tomato. Our concatenation-based "supergene" approach was unable to resolve relationships even with data from both the nuclear and mitochondrial genomes, and from multiple isolates per species. Our multispecies coalescent approach using both Bayesian and maximum likelihood methods was able to estimate a moderately supported species tree showing a close relationship among P. infestans, P. andina, and P. ipomoeae. The topology of the species tree was also identical to the dominant phylogenetic history estimated in our third approach, Bayesian concordance analysis. Our results support previous suggestions that P. andina is a hybrid species, with P. infestans representing one parental lineage. The other parental lineage is not known, but represents an independent evolutionary lineage more closely related to P. ipomoeae. While all five species likely originated in the New World, further study is needed to determine when and under what conditions this hybridization event may have occurred.

Plant DNA barcodes can accurately estimate species richness in poorly known floras.

Science.gov (United States)

Costion, Craig; Ford, Andrew; Cross, Hugh; Crayn, Darren; Harrington, Mark; Lowe, Andrew

2011-01-01

Widespread uptake of DNA barcoding technology for vascular plants has been slow due to the relatively poor resolution of species discrimination (∼70%) and low sequencing and amplification success of one of the two official barcoding loci, matK. Studies to date have mostly focused on finding a solution to these intrinsic limitations of the markers, rather than posing questions that can maximize the utility of DNA barcodes for plants with the current technology. Here we test the ability of plant DNA barcodes using the two official barcoding loci, rbcLa and matK, plus an alternative barcoding locus, trnH-psbA, to estimate the species diversity of trees in a tropical rainforest plot. Species discrimination accuracy was similar to findings from previous studies but species richness estimation accuracy proved higher, up to 89%. All combinations which included the trnH-psbA locus performed better at both species discrimination and richness estimation than matK, which showed little enhanced species discriminatory power when concatenated with rbcLa. The utility of the trnH-psbA locus is limited however, by the occurrence of intraspecific variation observed in some angiosperm families to occur as an inversion that obscures the monophyly of species. We demonstrate for the first time, using a case study, the potential of plant DNA barcodes for the rapid estimation of species richness in taxonomically poorly known areas or cryptic populations revealing a powerful new tool for rapid biodiversity assessment. The combination of the rbcLa and trnH-psbA loci performed better for this purpose than any two-locus combination that included matK. We show that although DNA barcodes fail to discriminate all species of plants, new perspectives and methods on biodiversity value and quantification may overshadow some of these shortcomings by applying barcode data in new ways.

Root-MUSIC Based Angle Estimation for MIMO Radar with Unknown Mutual Coupling

Directory of Open Access Journals (Sweden)

Jianfeng Li

2014-01-01

Full Text Available Direction of arrival (DOA estimation problem for multiple-input multiple-output (MIMO radar with unknown mutual coupling is studied, and an algorithm for the DOA estimation based on root multiple signal classification (MUSIC is proposed. Firstly, according to the Toeplitz structure of the mutual coupling matrix, output data of some specified sensors are selected to eliminate the influence of the mutual coupling. Then the reduced-dimension transformation is applied to make the computation burden lower as well as obtain a Vandermonde structure of the direction matrix. Finally, Root-MUSIC can be adopted for the angle estimation. The angle estimation performance of the proposed algorithm is better than that of estimation of signal parameters via rotational invariance techniques (ESPRIT-like algorithm and MUSIC-like algorithm. Furthermore, the proposed algorithm has lower complexity than them. The simulation results verify the effectiveness of the algorithm, and the theoretical estimation error of the algorithm is also derived.

Limited sampling hampers "big data" estimation of species richness in a tropical biodiversity hotspot.

Science.gov (United States)

Engemann, Kristine; Enquist, Brian J; Sandel, Brody; Boyle, Brad; Jørgensen, Peter M; Morueta-Holme, Naia; Peet, Robert K; Violle, Cyrille; Svenning, Jens-Christian

2015-02-01

Macro-scale species richness studies often use museum specimens as their main source of information. However, such datasets are often strongly biased due to variation in sampling effort in space and time. These biases may strongly affect diversity estimates and may, thereby, obstruct solid inference on the underlying diversity drivers, as well as mislead conservation prioritization. In recent years, this has resulted in an increased focus on developing methods to correct for sampling bias. In this study, we use sample-size-correcting methods to examine patterns of tropical plant diversity in Ecuador, one of the most species-rich and climatically heterogeneous biodiversity hotspots. Species richness estimates were calculated based on 205,735 georeferenced specimens of 15,788 species using the Margalef diversity index, the Chao estimator, the second-order Jackknife and Bootstrapping resampling methods, and Hill numbers and rarefaction. Species richness was heavily correlated with sampling effort, and only rarefaction was able to remove this effect, and we recommend this method for estimation of species richness with "big data" collections.

Mesospheric dust and its secondary effects as observed by the ESPRIT payload

Energy Technology Data Exchange (ETDEWEB)

Havnes, O. [Department of Physics and Technology, University of Tromsoe, Tromsoe (Norway); Surdal, L.H. [Narvik University College, Norvik, and Andoeya Rocket Range, Andenes (Norway); Philbrick, C.R. [Pennsylvania State University, Electrical Engineering Department (United States)

2009-07-01

The dust detector on the ESPRIT rocket detected two extended dust/aerosol layers during the launch on 1 July 2006. The lower layer at height {proportional_to}81.5-83 km coincided with a strong NLC and PMSE layer. The maximum dust charge density was {proportional_to}-3.5 x 10{sup 9} e m{sup -3} and the dust layer was characterized by a few strong dust layers where the dust charge density at the upper edges changed by factors 2-3 over a distance of or similar 20-35 . This again lends support to the suggested model for NLC and PMSE dust particles (Havnes and Naesheim, 2007) as a loosely bound water-ice clump interspersed with a considerable number of sub-nanometer-sized meteoric smoke particles, possibly also contaminated with meteoric atomic species.

Plant DNA barcodes can accurately estimate species richness in poorly known floras.

Directory of Open Access Journals (Sweden)

Craig Costion

Full Text Available BACKGROUND: Widespread uptake of DNA barcoding technology for vascular plants has been slow due to the relatively poor resolution of species discrimination (∼70% and low sequencing and amplification success of one of the two official barcoding loci, matK. Studies to date have mostly focused on finding a solution to these intrinsic limitations of the markers, rather than posing questions that can maximize the utility of DNA barcodes for plants with the current technology. METHODOLOGY/PRINCIPAL FINDINGS: Here we test the ability of plant DNA barcodes using the two official barcoding loci, rbcLa and matK, plus an alternative barcoding locus, trnH-psbA, to estimate the species diversity of trees in a tropical rainforest plot. Species discrimination accuracy was similar to findings from previous studies but species richness estimation accuracy proved higher, up to 89%. All combinations which included the trnH-psbA locus performed better at both species discrimination and richness estimation than matK, which showed little enhanced species discriminatory power when concatenated with rbcLa. The utility of the trnH-psbA locus is limited however, by the occurrence of intraspecific variation observed in some angiosperm families to occur as an inversion that obscures the monophyly of species. CONCLUSIONS/SIGNIFICANCE: We demonstrate for the first time, using a case study, the potential of plant DNA barcodes for the rapid estimation of species richness in taxonomically poorly known areas or cryptic populations revealing a powerful new tool for rapid biodiversity assessment. The combination of the rbcLa and trnH-psbA loci performed better for this purpose than any two-locus combination that included matK. We show that although DNA barcodes fail to discriminate all species of plants, new perspectives and methods on biodiversity value and quantification may overshadow some of these shortcomings by applying barcode data in new ways.

Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot

DEFF Research Database (Denmark)

Engemann, Kristine; Enquist, Brian J.; Sandel, Brody Steven

2015-01-01

in Ecuador, one of the most species-rich and climatically heterogeneous biodiversity hotspots. Species richness estimates were calculated based on 205,735 georeferenced specimens of 15,788 species using the Margalef diversity index, the Chao estimator, the second-order Jackknife and Bootstrapping resampling...

An analytical framework for estimating aquatic species density from environmental DNA

Science.gov (United States)

Chambert, Thierry; Pilliod, David S.; Goldberg, Caren S.; Doi, Hideyuki; Takahara, Teruhiko

2018-01-01

Environmental DNA (eDNA) analysis of water samples is on the brink of becoming a standard monitoring method for aquatic species. This method has improved detection rates over conventional survey methods and thus has demonstrated effectiveness for estimation of site occupancy and species distribution. The frontier of eDNA applications, however, is to infer species density. Building upon previous studies, we present and assess a modeling approach that aims at inferring animal density from eDNA. The modeling combines eDNA and animal count data from a subset of sites to estimate species density (and associated uncertainties) at other sites where only eDNA data are available. As a proof of concept, we first perform a cross-validation study using experimental data on carp in mesocosms. In these data, fish densities are known without error, which allows us to test the performance of the method with known data. We then evaluate the model using field data from a study on a stream salamander species to assess the potential of this method to work in natural settings, where density can never be known with absolute certainty. Two alternative distributions (Normal and Negative Binomial) to model variability in eDNA concentration data are assessed. Assessment based on the proof of concept data (carp) revealed that the Negative Binomial model provided much more accurate estimates than the model based on a Normal distribution, likely because eDNA data tend to be overdispersed. Greater imprecision was found when we applied the method to the field data, but the Negative Binomial model still provided useful density estimates. We call for further model development in this direction, as well as further research targeted at sampling design optimization. It will be important to assess these approaches on a broad range of study systems.

Joint 2D-DOA and Frequency Estimation for L-Shaped Array Using Iterative Least Squares Method

Directory of Open Access Journals (Sweden)

Ling-yun Xu

2012-01-01

Full Text Available We introduce an iterative least squares method (ILS for estimating the 2D-DOA and frequency based on L-shaped array. The ILS iteratively finds direction matrix and delay matrix, then 2D-DOA and frequency can be obtained by the least squares method. Without spectral peak searching and pairing, this algorithm works well and pairs the parameters automatically. Moreover, our algorithm has better performance than conventional ESPRIT algorithm and propagator method. The useful behavior of the proposed algorithm is verified by simulations.

Estimating tree species diversity in the savannah using NDVI and woody canopy cover

Science.gov (United States)

Madonsela, Sabelo; Cho, Moses Azong; Ramoelo, Abel; Mutanga, Onisimo; Naidoo, Laven

2018-04-01

Remote sensing applications in biodiversity research often rely on the establishment of relationships between spectral information from the image and tree species diversity measured in the field. Most studies have used normalized difference vegetation index (NDVI) to estimate tree species diversity on the basis that it is sensitive to primary productivity which defines spatial variation in plant diversity. The NDVI signal is influenced by photosynthetically active vegetation which, in the savannah, includes woody canopy foliage and grasses. The question is whether the relationship between NDVI and tree species diversity in the savanna depends on the woody cover percentage. This study explored the relationship between woody canopy cover (WCC) and tree species diversity in the savannah woodland of southern Africa and also investigated whether there is a significant interaction between seasonal NDVI and WCC in the factorial model when estimating tree species diversity. To fulfil our aim, we followed stratified random sampling approach and surveyed tree species in 68 plots of 90 m × 90 m across the study area. Within each plot, all trees with diameter at breast height of >10 cm were sampled and Shannon index - a common measure of species diversity which considers both species richness and abundance - was used to quantify tree species diversity. We then extracted WCC in each plot from existing fractional woody cover product produced from Synthetic Aperture Radar (SAR) data. Factorial regression model was used to determine the interaction effect between NDVI and WCC when estimating tree species diversity. Results from regression analysis showed that (i) WCC has a highly significant relationship with tree species diversity (r2 = 0.21; p NDVI and WCC is not significant, however, the factorial model significantly reduced the error of prediction (RMSE = 0.47, p NDVI (RMSE = 0.49) or WCC (RMSE = 0.49) model during the senescence period. The result justifies our assertion

Biomass models to estimate carbon stocks for hardwood tree species

Energy Technology Data Exchange (ETDEWEB)

Ruiz-Peinado, R.; Montero, G.; Rio, M. del

2012-11-01

To estimate forest carbon pools from forest inventories it is necessary to have biomass models or biomass expansion factors. In this study, tree biomass models were developed for the main hardwood forest species in Spain: Alnus glutinosa, Castanea sativa, Ceratonia siliqua, Eucalyptus globulus, Fagus sylvatica, Fraxinus angustifolia, Olea europaea var. sylvestris, Populus x euramericana, Quercus canariensis, Quercus faginea, Quercus ilex, Quercus pyrenaica and Quercus suber. Different tree biomass components were considered: stem with bark, branches of different sizes, above and belowground biomass. For each species, a system of equations was fitted using seemingly unrelated regression, fulfilling the additivity property between biomass components. Diameter and total height were explored as independent variables. All models included tree diameter whereas for the majority of species, total height was only considered in the stem biomass models and in some of the branch models. The comparison of the new biomass models with previous models fitted separately for each tree component indicated an improvement in the accuracy of the models. A mean reduction of 20% in the root mean square error and a mean increase in the model efficiency of 7% in comparison with recently published models. So, the fitted models allow estimating more accurately the biomass stock in hardwood species from the Spanish National Forest Inventory data. (Author) 45 refs.

Is glycoprotein IIb/IIIa antagonism as effective in women as in men following percutaneous coronary intervention?. Lessons from the ESPRIT study.

Science.gov (United States)

Fernandes, Laura S; Tcheng, James E; O'Shea, J Conor; Weiner, Bonnie; Lorenz, Todd J; Pacchiana, Cindy; Berdan, Lisa G; Maresh, Kelly J; Joseph, Diane; Madan, Mina; Mann, Tift; Kilaru, Rakhi; Hochman, Judith S; Kleiman, Neal S

2002-09-18

The study was done to determine whether eptifibatide, a platelet glycoprotein (GP) IIb/IIIa antagonist, prevents ischemic complications following percutaneous coronary interventions (PCIs) in women as well as in men. Eptifibatide reduces ischemic complications after nonurgent coronary stent interventions. We compared outcomes in women (n = 562) and men (n = 1,502) enrolled in the Enhanced Suppression of the Platelet GP IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial of double-bolus eptifibatide during PCI. Women in the ESPRIT trial were older, and more frequently had hypertension, diabetes mellitus, or acute coronary syndromes, but were less likely to have prior PCI or coronary artery bypass graft surgery. The primary end point, a composite at 48 h of death, myocardial infarction (MI), urgent target vessel revascularization (TVR), and unplanned GP IIb/IIIa use, occurred in 10.5% of women and 7.9% of men (p = 0.082). The composite of death, MI, or TVR after one year occurred in 24.5% of women compared with 18% of men (p = 0.0008). At 48 h, eptifibatide reduced the composite of death, MI, and TVR from 14.5% to 6.0% in women versus 9.0% to 6.8% in men. At one year, these differences persisted: 28.9% versus 20.0% for women and 19.5% versus 16.6% for men. No statistical interaction existed between treatment and gender at either 48 h (p = 0.063) or one year (p = 0.2). Bleeding occurred more commonly in women (5.5% vs. 2.6%, p = 0.002), and was more common in eptifibatide-treated women. After adjustment for age, weight, and hypertension, no interaction between treatment and gender was present. Eptifibatide is effective to prevent ischemic complications of PCI in women and may eliminate gender-related differences in PCI outcomes.

Estimating species – area relationships by modeling abundance and frequency subject to incomplete sampling

Science.gov (United States)

Yamaura, Yuichi; Connor, Edward F.; Royle, Andy; Itoh, Katsuo; Sato, Kiyoshi; Taki, Hisatomo; Mishima, Yoshio

2016-01-01

Models and data used to describe species–area relationships confound sampling with ecological process as they fail to acknowledge that estimates of species richness arise due to sampling. This compromises our ability to make ecological inferences from and about species–area relationships. We develop and illustrate hierarchical community models of abundance and frequency to estimate species richness. The models we propose separate sampling from ecological processes by explicitly accounting for the fact that sampled patches are seldom completely covered by sampling plots and that individuals present in the sampling plots are imperfectly detected. We propose a multispecies abundance model in which community assembly is treated as the summation of an ensemble of species-level Poisson processes and estimate patch-level species richness as a derived parameter. We use sampling process models appropriate for specific survey methods. We propose a multispecies frequency model that treats the number of plots in which a species occurs as a binomial process. We illustrate these models using data collected in surveys of early-successional bird species and plants in young forest plantation patches. Results indicate that only mature forest plant species deviated from the constant density hypothesis, but the null model suggested that the deviations were too small to alter the form of species–area relationships. Nevertheless, results from simulations clearly show that the aggregate pattern of individual species density–area relationships and occurrence probability–area relationships can alter the form of species–area relationships. The plant community model estimated that only half of the species present in the regional species pool were encountered during the survey. The modeling framework we propose explicitly accounts for sampling processes so that ecological processes can be examined free of sampling artefacts. Our modeling approach is extensible and could be applied

New developments in secondary stroke prevention: impact of the European/Australasian Stroke Prevention in Reversible Ischemia Trial (ESPRIT) on clinical management.

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Lutsep, Helmi L

2007-01-01

Secondary stroke prevention is an important goal of poststroke patient treatment. Various pharmacologic approaches have been advocated, but the relative efficacy and safety of these regimens has remained the subject of much debate. Recently released data from the European/Australasian Stroke Prevention in Reversible Ischemia Trial (ESPRIT) indicated that combination therapy with aspirin and extended-release dipyridamole was more effective than aspirin monotherapy, and probably more effective than anticoagulants, for the prevention of cerebrovascular events after a stroke or transient ischemic attack. When viewed in light of results of earlier trials, these findings confirmed that combination aspirin plus extended-release dipyridamole therapy improved outcomes in these patients and is a recommended option for poststroke patient treatment.

Neurological signs and late-life depressive symptoms in a community population: the ESPRIT study.

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Soremekun, Mishael; Stewart, Robert; Portet, Florence; Artero, Sylvaine; Ancelin, Marie-Laure; Ritchie, Karen

2010-07-01

Depression in the elderly is common and often resistant to treatment. It has been suggested that late-life depression may be related to underlying neurobiological changes. However, these observations are derived from diverse clinical samples and as yet have not been confirmed in a more representative population study. Our aim was to investigate associations between neurological signs as markers of underlying brain dysfunction and caseness for depression in an elderly community sample, controlling for physical health and comorbid/past neurological disorders. A cross-sectional analysis of 2102 older people without dementia from the ESPRIT project. Depressive symptomatology was ascertained using the CES-D and abnormal neurological signs/comorbidity from a full neurological examination according to ICD-10 criteria. Pyramidal, extrapyramidal, cranial nerve and sensory deficit signs were significantly associated with case-level depressive symptoms. However, all odds ratios were close to null values in participants who did not have previous neurological disorder. We confirmed previous findings of an association between neurological signs and case-level depressive symptoms in late life. However, this association may simply reflect the impact of more severe comorbid neurological disorder. (c) 2009 John Wiley & Sons, Ltd.

Estimating species richness and status of solitary bees and bumblebees in agricultural semi-natural habitats

DEFF Research Database (Denmark)

Calabuig, Isabel

2000-01-01

Estimation of Western Europe number of bee species varies between 2000 and 4500 (Williams 1995) but there are substantial indications of a decline in bee species in Europe and other regions. In Denmark, wild bee species richness, distribution, and abundance have not been studied in detail for about...... 75 years, and nothing is known about which species are potentially vulnerable or endangered. A rough estimate of solitary bees and bumblebees includes approximately 238 species (26 genera) and 29 species respectively. In a pan-trap survey of six kilometres of semi-natural habitats in a Danish...... agricultural landscape, 72 solitary bee species and 19 species of bumblebees were recorded, several of which are considered vulnerable or endangered in neighbouring countries. Nesting conditions for rare cavity-nesting species and the possible role of the semi-natural habitats as corridors for species...

Neotropical bats: estimating species diversity with DNA barcodes.

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Elizabeth L Clare

Full Text Available DNA barcoding using the cytochrome c oxidase subunit 1 gene (COI is frequently employed as an efficient method of species identification in animal life and may also be used to estimate species richness, particularly in understudied faunas. Despite numerous past demonstrations of the efficiency of this technique, few studies have attempted to employ DNA barcoding methodologies on a large geographic scale, particularly within tropical regions. In this study we survey current and potential species diversity using DNA barcodes with a collection of more than 9000 individuals from 163 species of Neotropical bats (order Chiroptera. This represents one of the largest surveys to employ this strategy on any animal group and is certainly the largest to date for land vertebrates. Our analysis documents the utility of this tool over great geographic distances and across extraordinarily diverse habitats. Among the 163 included species 98.8% possessed distinct sets of COI haplotypes making them easily recognizable at this locus. We detected only a single case of shared haplotypes. Intraspecific diversity in the region was high among currently recognized species (mean of 1.38%, range 0-11.79% with respect to birds, though comparable to other bat assemblages. In 44 of 163 cases, well-supported, distinct intraspecific lineages were identified which may suggest the presence of cryptic species though mean and maximum intraspecific divergence were not good predictors of their presence. In all cases, intraspecific lineages require additional investigation using complementary molecular techniques and additional characters such as morphology and acoustic data. Our analysis provides strong support for the continued assembly of DNA barcoding libraries and ongoing taxonomic investigation of bats.

2-D DOA Estimation of LFM Signals Based on Dechirping Algorithm and Uniform Circle Array

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K. B. Cui

2017-04-01

Full Text Available Based on Dechirping algorithm and uniform circle array(UCA, a new 2-D direction of arrival (DOA estimation algorithm of linear frequency modulation (LFM signals is proposed in this paper. The algorithm uses the thought of Dechirping and regards the signal to be estimated which is received by the reference sensor as the reference signal and proceeds the difference frequency treatment with the signal received by each sensor. So the signal to be estimated becomes a single-frequency signal in each sensor. Then we transform the single-frequency signal to an isolated impulse through Fourier transform (FFT and construct a new array data model based on the prominent parts of the impulse. Finally, we respectively use multiple signal classification (MUSIC algorithm and rotational invariance technique (ESPRIT algorithm to realize 2-D DOA estimation of LFM signals. The simulation results verify the effectiveness of the algorithm proposed.

Bailout use of platelet glycoprotein IIb-IIIa inhibition during coronary stent implantation: observations from the ESPRIT trial.

Science.gov (United States)

Cantor, Warren J; Madan, Mina; O'Shea, J Conor; Chisholm, Robert J; Lui, Henry K; Cohen, David J; Feldman, Robert L; Green, Robert; Hellkamp, Anne S; Kitt, Michael M; Tcheng, James E

2005-07-01

Glycoprotein (GP) IIb/IIIa inhibitors are often used as a rescue or bailout therapy to manage complications arising during percutaneous coronary intervention, rather than as prophylactic treatment. We sought to identify the characteristics and outcomes of patients requiring bailout treatment. The ESPRIT trial randomized 2,064 patients to receive eptifibatide or placebo starting immediately before percutaneous coronary intervention (PCI). Bailout therapy was used in 77 patients: 43 (4.2%) randomized to placebo and 34 (3.3%) to eptifibatide (p = 0.3). Bailout therapy for thrombosis was used more often in the placebo group (2.1% versus 1.0%; p = 0.03). Multivariable predictors of bailout included a greater than or equal to 90% stenosis, or visible thrombus on the baseline angiogram, and no aspirin pre-treatment before PCI. However, overall the model predicted bailout poorly (c-index = 0.64). The need for bailout cannot be reliably predicted using baseline characteristics. Patients experiencing complications have poor clinical outcomes despite bailout use of GP IIb/IIIa inhibitors.

Transmit/Receive Spatial Smoothing with Improved Effective Array Aperture for Angle and Mutual Coupling Estimation in Bistatic MIMO Radar

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Haomiao Liu

2016-01-01

Full Text Available We proposed a transmit/receive spatial smoothing with improved effective aperture approach for angle and mutual coupling estimation in bistatic MIMO radar. Firstly, the noise in each channel is restrained, by exploiting its independency, in both the spatial domain and temporal domain. Then the augmented transmit and receive spatial smoothing matrices with improved effective aperture are obtained, by exploiting the Vandermonde structure of steering vector with uniform linear array. The DOD and DOA can be estimated by utilizing the unitary ESPRIT algorithm. Finally, the mutual coupling coefficients of both the transmitter and the receiver can be figured out with the estimated angles of DOD and DOA. Numerical examples are presented to verify the effectiveness of the proposed method.

Equipoise in the enhanced supression of the platelet IIb/IIIa receptor with integrilin trial (ESPRIT): a critical appraisal.

Science.gov (United States)

Mann, Howard; London, Alex John; Mann, Jeffrey

2005-01-01

Enhanced Supression of the Platelet IIb/IIIa Receptor with Integrilin Trial (ESPRIT) was a multicenter randomized controlled clinical trial in which participants were randomized between eptifibatide and placebo. A "clinical hold" was initially placed on the trial by the US Food and Drug Administration (FDA), which was concerned about the placebo-only control arm. The hold was lifted after additional information concerning the use of platelet glycoprotein IIb/IIIa inhibitors in clinical practice, derived from a survey of interventional cardiologists, was provided. The trial's principal investigator and colleagues have described how these issues were resolved, and advance a claim of equipoise for the trial. In this critical appraisal we examine the information and arguments proffered in support of the trial design and conclude that they evidence a misunderstanding of equipoise. We believe that a placebo-only control arm was not justified by the information provided by the trialists.

New models for estimating the carbon sink capacity of Spanish softwood species

Energy Technology Data Exchange (ETDEWEB)

Ruiz-Peinado, R.; Rio, M. del; Montero, G.

2011-07-01

Quantifying the carbon balance in forests is one of the main challenges in forest management. Forest carbon stocks are usually estimated indirectly through biomass equations applied to forest inventories, frequently considering different tree biomass components. The aim of this study is to develop systems of equations for predicting tree biomass components for the main forest softwood species in Spain: Abies alba Mill., A. pinsapo Boiss., Juniperus thurifera L., Pinus canariensis Sweet ex Spreng., P. halepensis Mill., P. nigra Arn., P. pinaster Ait., P. pinea L., P. sylvestris L., P. uncinata Mill. For each species, a system of additive biomass models was fitted using seemingly unrelated regression. Diameter at the breast height and total height were used as independent variables. Diameter appears in all component models, while tree height was included in the stem component model of all species and in some branch component equations. Total height was included in order to improve biomass estimations at different sites. These biomass models were compared to previously available equations in order to test their accuracy and it was found that they yielded better fitting statistics in all cases. Moreover, the models fulfil the additivity property. We also developed root:shoot ratios in order to determine the partitioning into aboveground and belowground biomass. A number of differences were found between species, with a minimum of 0.183 for A. alba and a maximum of 0.385 for P. uncinata. The mean value for the softwood species studied was 0.265. Since the Spanish National Forest Inventory (NFI) records species, tree diameter and height of sample trees, these biomass models and ratios can be used to accurately estimate carbon stocks from NFI data. (Author) 55 refs.

New models for estimating the carbon sink capacity of Spanish softwood species

International Nuclear Information System (INIS)

Ruiz-Peinado, R.; Rio, M. del; Montero, G.

2011-01-01

Quantifying the carbon balance in forests is one of the main challenges in forest management. Forest carbon stocks are usually estimated indirectly through biomass equations applied to forest inventories, frequently considering different tree biomass components. The aim of this study is to develop systems of equations for predicting tree biomass components for the main forest softwood species in Spain: Abies alba Mill., A. pinsapo Boiss., Juniperus thurifera L., Pinus canariensis Sweet ex Spreng., P. halepensis Mill., P. nigra Arn., P. pinaster Ait., P. pinea L., P. sylvestris L., P. uncinata Mill. For each species, a system of additive biomass models was fitted using seemingly unrelated regression. Diameter at the breast height and total height were used as independent variables. Diameter appears in all component models, while tree height was included in the stem component model of all species and in some branch component equations. Total height was included in order to improve biomass estimations at different sites. These biomass models were compared to previously available equations in order to test their accuracy and it was found that they yielded better fitting statistics in all cases. Moreover, the models fulfil the additivity property. We also developed root:shoot ratios in order to determine the partitioning into aboveground and belowground biomass. A number of differences were found between species, with a minimum of 0.183 for A. alba and a maximum of 0.385 for P. uncinata. The mean value for the softwood species studied was 0.265. Since the Spanish National Forest Inventory (NFI) records species, tree diameter and height of sample trees, these biomass models and ratios can be used to accurately estimate carbon stocks from NFI data. (Author) 55 refs.

Improving chemical species tomography of turbulent flows using covariance estimation.

Science.gov (United States)

Grauer, Samuel J; Hadwin, Paul J; Daun, Kyle J

2017-05-01

Chemical species tomography (CST) experiments can be divided into limited-data and full-rank cases. Both require solving ill-posed inverse problems, and thus the measurement data must be supplemented with prior information to carry out reconstructions. The Bayesian framework formalizes the role of additive information, expressed as the mean and covariance of a joint-normal prior probability density function. We present techniques for estimating the spatial covariance of a flow under limited-data and full-rank conditions. Our results show that incorporating a covariance estimate into CST reconstruction via a Bayesian prior increases the accuracy of instantaneous estimates. Improvements are especially dramatic in real-time limited-data CST, which is directly applicable to many industrially relevant experiments.

The evaluation of subcutaneous proleukin (interleukin-2) in a randomized international trial: rationale, design, and methods of ESPRIT.

Science.gov (United States)

Emery, Sean; Abrams, Donald I; Cooper, David A; Darbyshire, Janet H; Lane, H Clifford; Lundgren, Jens D; Neaton, James D

2002-04-01

The Evaluation of Subcutaneous Proleukin in a Randomized International Trial (ESPRIT) is a large ongoing randomized trial of subcutaneous interleukin-2 (IL-2) plus antiretroviral therapy versus antiretroviral therapy alone in patients with HIV (human immunodeficiency virus) disease and CD4 cell counts of at least 300 cells/mm(3). The primary objective is to determine whether the addition of IL-2 to combination antiretroviral therapy improves morbidity and mortality. The aim is to recruit 4000 participants and follow them for an average of 5 years. Eligible subjects will be recruited at 275 investigational sites in 23 countries around the world. Coupled with broad eligibility criteria this will ensure widely applicable results. A range of secondary objectives will also be addressed in this setting that will include the conduct of observational studies and nested substudies with a public health focus. This article describes the rationale supporting the trial in addition to reviewing the study design, coordination, and governance.

Estimated Mortality of Selected Migratory Bird Species from Mowing and Other Mechanical Operations in Canadian Agriculture

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Joerg Tews

2013-12-01

Full Text Available Mechanical operations such as mowing, tilling, seeding, and harvesting are well-known sources of direct avian mortality in agricultural fields. However, there are currently no mortality rate estimates available for any species group or larger jurisdiction. Even reviews of sources of mortality in birds have failed to address mechanical disturbance in farm fields. To overcome this information gap we provide estimates of total mortality rates by mechanical operations for five selected species across Canada. In our step-by-step modeling approach we (i quantified the amount of various types of agricultural land in each Bird Conservation Region (BCR in Canada, (ii estimated population densities by region and agricultural habitat type for each selected species, (iii estimated the average timing of mechanical agricultural activities, egg laying, and fledging, (iv and used these values and additional demographical parameters to derive estimates of total mortality by species within each BCR. Based on our calculations the total annual estimated incidental take of young ranged from ~138,000 for Horned Lark (Eremophila alpestris to as much as ~941,000 for Savannah Sparrow (Passerculus sandwichensis. Net losses to the fall flight of birds, i.e., those birds that would have fledged successfully in the absence of mechanical disturbance, were, for example ~321,000 for Bobolink (Dolichonyx oryzivorus and ~483,000 for Savannah Sparrow. Although our estimates are subject to an unknown degree of uncertainty, this assessment is a very important first step because it provides a broad estimate of incidental take for a set of species that may be particularly vulnerable to mechanical operations and a starting point for future refinements of model parameters if and when they become available.

Estimating the spatial and temporal distribution of species richness within Sequoia and Kings Canyon National Parks.

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Steve Wathen

Full Text Available Evidence for significant losses of species richness or biodiversity, even within protected natural areas, is mounting. Managers are increasingly being asked to monitor biodiversity, yet estimating biodiversity is often prohibitively expensive. As a cost-effective option, we estimated the spatial and temporal distribution of species richness for four taxonomic groups (birds, mammals, herpetofauna (reptiles and amphibians, and plants within Sequoia and Kings Canyon National Parks using only existing biological studies undertaken within the Parks and the Parks' long-term wildlife observation database. We used a rarefaction approach to model species richness for the four taxonomic groups and analyzed those groups by habitat type, elevation zone, and time period. We then mapped the spatial distributions of species richness values for the four taxonomic groups, as well as total species richness, for the Parks. We also estimated changes in species richness for birds, mammals, and herpetofauna since 1980. The modeled patterns of species richness either peaked at mid elevations (mammals, plants, and total species richness or declined consistently with increasing elevation (herpetofauna and birds. Plants reached maximum species richness values at much higher elevations than did vertebrate taxa, and non-flying mammals reached maximum species richness values at higher elevations than did birds. Alpine plant communities, including sagebrush, had higher species richness values than did subalpine plant communities located below them in elevation. These results are supported by other papers published in the scientific literature. Perhaps reflecting climate change: birds and herpetofauna displayed declines in species richness since 1980 at low and middle elevations and mammals displayed declines in species richness since 1980 at all elevations.

Hepatitis C virus (HCV) RNA profiles among chronic HIV/HCV-coinfected individuals in ESPRIT; spontaneous HCV RNA clearance observed in nine individuals.

Science.gov (United States)

Grint, D; Tedaldi, E; Peters, L; Mocroft, A; Edlin, B; Gallien, S; Klinker, H; Boesecke, C; Kokordelis, P; Rockstroh, J K

2017-07-01

Studies have shown that hepatitis C virus (HCV) RNA levels remain stable over time in HIV/HCV-coinfected individuals taking combination antiretroviral therapy (cART), while spontaneous clearance of HCV RNA during the persistent infection phase has been documented only rarely among those with the CC interleukin (IL)-28B genotype. This study describes HCV RNA profiles and factors associated with changes over time in HCV RNA levels in the ESPRIT study. HIV/HCV-coinfected individuals positive for HCV RNA were included in the study. Follow-up was counted from the first HCV RNA positive test and censored at the initiation of interferon-based treatment. HCV RNA and IL-28B measurements were performed in the same reference laboratory. Random effects mixed models were used to analyse changes over time in HCV RNA. A total of 312 ESPRIT patients were included in the study (151 in the arm receiving subcutaneous recombinant IL-2 and 161 in the control arm). Most of the patients were white (89%) and male (76%), and they had a median of 5 HCV RNA measurements per person [interquartile range (IQR) 3-6; range 1-9]. Median follow-up was 5 years (IQR: 2-6 years). At baseline, 96% of patients were taking cART and 93% had undetectable HIV RNA. Mean HCV RNA levels decreased by 13% per year over the study period [95% confidence interval (CI) 8-18%; P < 0.0001]. Baseline HCV RNA levels and the change over time in HCV RNA did not differ by randomization arm (P = 0.16 and P = 0.56, respectively). Nine individuals spontaneously cleared HCV RNA during follow-up [IL-28B genotypes: CC, five patients (56%); CT, four patients (44%)]. HCV RNA levels decreased over time in this population with well-controlled HIV infection. Spontaneous clearance of HCV RNA was documented in five individuals with IL-28B genotype CC and four with the CT genotype. © 2016 British HIV Association.

Estimates of hybridization between two species of catostomids in the Columbia River

Energy Technology Data Exchange (ETDEWEB)

Dauble, D.D.; Buschbom, R.L.

1981-01-01

Extent of hybridization is described between two sympatric catostomids, Catostomus macrocheilus and C. columbianus, from the Hanford Reach of the Columbia River, southeastern Washington state. Estimated percentage of hybrids based on presence of intermediate meristic characters ranged from 12.4 to 14.6% of the total sucker population. Discriminant function analysis reduced subjective variability and lowered estimates of hybridization to 3.0 to 7.1%. Principal component analysis also provided evidence that the suspected hybrids were intermediate between populations of C. macrocheilus and C. columbianus. Meristic characters contributed most to all methods of treatment, with number of lateral line scales the best single criterion for species separation. Any analysis of closely related species would benefit from examination of offspring from artificial crosses and from knowledge of allopatric population characteristics. Breakdown of isolating mechanisms leading to C. macrocheilus X C. columbianus crosses may result from overlap in spawning time and incomplete habitat segregation. Morphological and coloration differences at spawning may provide a basis for species recognition, thus providing some degree of ethological isolation.

Combining counts and incidence data: an efficient approach for estimating the log-normal species abundance distribution and diversity indices.

Science.gov (United States)

Bellier, Edwige; Grøtan, Vidar; Engen, Steinar; Schartau, Ann Kristin; Diserud, Ola H; Finstad, Anders G

2012-10-01

Obtaining accurate estimates of diversity indices is difficult because the number of species encountered in a sample increases with sampling intensity. We introduce a novel method that requires that the presence of species in a sample to be assessed while the counts of the number of individuals per species are only required for just a small part of the sample. To account for species included as incidence data in the species abundance distribution, we modify the likelihood function of the classical Poisson log-normal distribution. Using simulated community assemblages, we contrast diversity estimates based on a community sample, a subsample randomly extracted from the community sample, and a mixture sample where incidence data are added to a subsample. We show that the mixture sampling approach provides more accurate estimates than the subsample and at little extra cost. Diversity indices estimated from a freshwater zooplankton community sampled using the mixture approach show the same pattern of results as the simulation study. Our method efficiently increases the accuracy of diversity estimates and comprehension of the left tail of the species abundance distribution. We show how to choose the scale of sample size needed for a compromise between information gained, accuracy of the estimates and cost expended when assessing biological diversity. The sample size estimates are obtained from key community characteristics, such as the expected number of species in the community, the expected number of individuals in a sample and the evenness of the community.

A comparison of fisheries biological reference points estimated from temperature-specific multi-species and single-species climate-enhanced stock assessment models

Science.gov (United States)

Holsman, Kirstin K.; Ianelli, James; Aydin, Kerim; Punt, André E.; Moffitt, Elizabeth A.

2016-12-01

Multi-species statistical catch at age models (MSCAA) can quantify interacting effects of climate and fisheries harvest on species populations, and evaluate management trade-offs for fisheries that target several species in a food web. We modified an existing MSCAA model to include temperature-specific growth and predation rates and applied the modified model to three fish species, walleye pollock (Gadus chalcogrammus), Pacific cod (Gadus macrocephalus) and arrowtooth flounder (Atheresthes stomias), from the eastern Bering Sea (USA). We fit the model to data from 1979 through 2012, with and without trophic interactions and temperature effects, and use projections to derive single- and multi-species biological reference points (BRP and MBRP, respectively) for fisheries management. The multi-species model achieved a higher over-all goodness of fit to the data (i.e. lower negative log-likelihood) for pollock and Pacific cod. Variability from water temperature typically resulted in 5-15% changes in spawning, survey, and total biomasses, but did not strongly impact recruitment estimates or mortality. Despite this, inclusion of temperature in projections did have a strong effect on BRPs, including recommended yield, which were higher in single-species models for Pacific cod and arrowtooth flounder that included temperature compared to the same models without temperature effects. While the temperature-driven multi-species model resulted in higher yield MBPRs for arrowtooth flounder than the same model without temperature, we did not observe the same patterns in multi-species models for pollock and Pacific cod, where variability between harvest scenarios and predation greatly exceeded temperature-driven variability in yield MBRPs. Annual predation on juvenile pollock (primarily cannibalism) in the multi-species model was 2-5 times the annual harvest of adult fish in the system, thus predation represents a strong control on population dynamics that exceeds temperature

Estimation of nitrate in aqueous discharge streams in presence of other anionic species

International Nuclear Information System (INIS)

Dhara, Amrita; Sonar, N.L.; Valsala, T.P.; Vishwaraj, I.

2017-01-01

In the PUREX process the spent fuel is dissolved in concentrated nitric acid for the recovery of U and Pu using 30% TBP solvent system. The added nitrates are reporting in the waste streams of reprocessing plant. In view of the environmental concern for nitrate discharges, it is essential to monitor the nitrate content in the radioactive waste streams. An analytical method based on nitration of salicylic acid in acidic medium was studied for its applicability in the estimation of nitrate in radioactive waste containing various other anions. The yellow colored complex formed absorbs at 410 nm in alkaline media. Interference of various anionic species like sulphide, chloride, ferrocyanide, phosphate etc present in different waste streams on the estimation of nitrate was studied. Nitrate could be estimated in radioactive waste in presence of other anionic species within an error of less than 6%. (author)

Denis de Casabianca, Montesquieu. De l’étude des sciences à l’esprit des lois, Paris, Honoré Champion, 2008, 976 pages, 145 €

Directory of Open Access Journals (Sweden)

Capucine Lebreton

2010-09-01

Full Text Available Montesquieu, « Newton du monde humain », fondateur d’une physique sociale, qui aurait le premier appliqué la méthode scientifique aux phénomènes humains et mis en évidence leur rationalité : ce jugement a été largement utilisé pour revendiquer l’auteur de L’Esprit des lois comme fondateur des sciences sociales. Son intérêt constant pour les sciences, ses lectures, ses activités académiques et ses propres expérimentations n’auraient pu qu’inspirer un modèle scientifique à ses écrits philosophi...

An efficient central DOA tracking algorithm for multiple incoherently distributed sources

Science.gov (United States)

Hassen, Sonia Ben; Samet, Abdelaziz

2015-12-01

In this paper, we develop a new tracking method for the direction of arrival (DOA) parameters assuming multiple incoherently distributed (ID) sources. The new approach is based on a simple covariance fitting optimization technique exploiting the central and noncentral moments of the source angular power densities to estimate the central DOAs. The current estimates are treated as measurements provided to the Kalman filter that model the dynamic property of directional changes for the moving sources. Then, the covariance-fitting-based algorithm and the Kalman filtering theory are combined to formulate an adaptive tracking algorithm. Our algorithm is compared to the fast approximated power iteration-total least square-estimation of signal parameters via rotational invariance technique (FAPI-TLS-ESPRIT) algorithm using the TLS-ESPRIT method and the subspace updating via FAPI-algorithm. It will be shown that the proposed algorithm offers an excellent DOA tracking performance and outperforms the FAPI-TLS-ESPRIT method especially at low signal-to-noise ratio (SNR) values. Moreover, the performances of the two methods increase as the SNR values increase. This increase is more prominent with the FAPI-TLS-ESPRIT method. However, their performances degrade when the number of sources increases. It will be also proved that our method depends on the form of the angular distribution function when tracking the central DOAs. Finally, it will be shown that the more the sources are spaced, the more the proposed method can exactly track the DOAs.

Does bioelectrical impedance analysis accurately estimate the condition of threatened and endangered desert fish species?

Science.gov (United States)

Dibble, Kimberly L.; Yard, Micheal D.; Ward, David L.; Yackulic, Charles B.

2017-01-01

Bioelectrical impedance analysis (BIA) is a nonlethal tool with which to estimate the physiological condition of animals that has potential value in research on endangered species. However, the effectiveness of BIA varies by species, the methodology continues to be refined, and incidental mortality rates are unknown. Under laboratory conditions we tested the value of using BIA in addition to morphological measurements such as total length and wet mass to estimate proximate composition (lipid, protein, ash, water, dry mass, energy density) in the endangered Humpback Chub Gila cypha and Bonytail G. elegans and the species of concern Roundtail Chub G. robusta and conducted separate trials to estimate the mortality rates of these sensitive species. Although Humpback and Roundtail Chub exhibited no or low mortality in response to taking BIA measurements versus handling for length and wet-mass measurements, Bonytails exhibited 14% and 47% mortality in the BIA and handling experiments, respectively, indicating that survival following stress is species specific. Derived BIA measurements were included in the best models for most proximate components; however, the added value of BIA as a predictor was marginal except in the absence of accurate wet-mass data. Bioelectrical impedance analysis improved the R2 of the best percentage-based models by no more than 4% relative to models based on morphology. Simulated field conditions indicated that BIA models became increasingly better than morphometric models at estimating proximate composition as the observation error around wet-mass measurements increased. However, since the overall proportion of variance explained by percentage-based models was low and BIA was mostly a redundant predictor, we caution against the use of BIA in field applications for these sensitive fish species.

Estimating Lion Abundance using N-mixture Models for Social Species.

Science.gov (United States)

Belant, Jerrold L; Bled, Florent; Wilton, Clay M; Fyumagwa, Robert; Mwampeta, Stanslaus B; Beyer, Dean E

2016-10-27

Declining populations of large carnivores worldwide, and the complexities of managing human-carnivore conflicts, require accurate population estimates of large carnivores to promote their long-term persistence through well-informed management We used N-mixture models to estimate lion (Panthera leo) abundance from call-in and track surveys in southeastern Serengeti National Park, Tanzania. Because of potential habituation to broadcasted calls and social behavior, we developed a hierarchical observation process within the N-mixture model conditioning lion detectability on their group response to call-ins and individual detection probabilities. We estimated 270 lions (95% credible interval = 170-551) using call-ins but were unable to estimate lion abundance from track data. We found a weak negative relationship between predicted track density and predicted lion abundance from the call-in surveys. Luminosity was negatively correlated with individual detection probability during call-in surveys. Lion abundance and track density were influenced by landcover, but direction of the corresponding effects were undetermined. N-mixture models allowed us to incorporate multiple parameters (e.g., landcover, luminosity, observer effect) influencing lion abundance and probability of detection directly into abundance estimates. We suggest that N-mixture models employing a hierarchical observation process can be used to estimate abundance of other social, herding, and grouping species.

Near-Field Source Localization Using a Special Cumulant Matrix

Science.gov (United States)

Cui, Han; Wei, Gang

A new near-field source localization algorithm based on a uniform linear array was proposed. The proposed algorithm estimates each parameter separately but does not need pairing parameters. It can be divided into two important steps. The first step is bearing-related electric angle estimation based on the ESPRIT algorithm by constructing a special cumulant matrix. The second step is the other electric angle estimation based on the 1-D MUSIC spectrum. It offers much lower computational complexity than the traditional near-field 2-D MUSIC algorithm and has better performance than the high-order ESPRIT algorithm. Simulation results demonstrate that the performance of the proposed algorithm is close to the Cramer-Rao Bound (CRB).

An estimate of the potential number of mayfly species (Ephemeroptera, Insecta still to be described in Brazil

Directory of Open Access Journals (Sweden)

Mylena Neves Cardoso

2015-07-01

Full Text Available This study reviewed the data on the Brazilian Ephemeroptera, based on the studies published before July, 2013, estimated the number of species still to be described, and identified which regions of the country have been the subject of least research. More than half the species are known from the description of only one developmental stage, with imagoes being described more frequently than nymphs. The Brazilian Northeast is the region with the weakest database. Body size affected description rates, with a strong tendency for the larger species to be described first. The estimated number of unknown Brazilian species was accentuated by the fact that so few species have been described so far. The steep slope of the asymptote and the considerable confidence interval of the estimate reinforce the conclusion that a large number of species are still to be described. This emphasizes the need for investments in the training of specialists in systematics and ecology for all regions of Brazil to correct these deficiencies, given the role of published papers as a primary source of information, and the fundamental importance of taxonomic knowledge for the development of effective measures for the conservation of ephemeropteran and the aquatic ecosystems they depend on. Keywords: Biodiversity, Prediction of species diversity, Mayflies

How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model.

Science.gov (United States)

Starrfelt, Jostein; Liow, Lee Hsiang

2016-04-05

The fossil record is a rich source of information about biological diversity in the past. However, the fossil record is not only incomplete but has also inherent biases due to geological, physical, chemical and biological factors. Our knowledge of past life is also biased because of differences in academic and amateur interests and sampling efforts. As a result, not all individuals or species that lived in the past are equally likely to be discovered at any point in time or space. To reconstruct temporal dynamics of diversity using the fossil record, biased sampling must be explicitly taken into account. Here, we introduce an approach that uses the variation in the number of times each species is observed in the fossil record to estimate both sampling bias and true richness. We term our technique TRiPS (True Richness estimated using a Poisson Sampling model) and explore its robustness to violation of its assumptions via simulations. We then venture to estimate sampling bias and absolute species richness of dinosaurs in the geological stages of the Mesozoic. Using TRiPS, we estimate that 1936 (1543-2468) species of dinosaurs roamed the Earth during the Mesozoic. We also present improved estimates of species richness trajectories of the three major dinosaur clades: the sauropodomorphs, ornithischians and theropods, casting doubt on the Jurassic-Cretaceous extinction event and demonstrating that all dinosaur groups are subject to considerable sampling bias throughout the Mesozoic. © 2016 The Authors.

Estimating species occurrence, abundance, and detection probability using zero-inflated distributions.

Science.gov (United States)

Wenger, Seth J; Freeman, Mary C

2008-10-01

Researchers have developed methods to account for imperfect detection of species with either occupancy (presence absence) or count data using replicated sampling. We show how these approaches can be combined to simultaneously estimate occurrence, abundance, and detection probability by specifying a zero-inflated distribution for abundance. This approach may be particularly appropriate when patterns of occurrence and abundance arise from distinct processes operating at differing spatial or temporal scales. We apply the model to two data sets: (1) previously published data for a species of duck, Anas platyrhynchos, and (2) data for a stream fish species, Etheostoma scotti. We show that in these cases, an incomplete-detection zero-inflated modeling approach yields a superior fit to the data than other models. We propose that zero-inflated abundance models accounting for incomplete detection be considered when replicate count data are available.

Estimating the ecology of extinct species with paleoecological data assimilation

Science.gov (United States)

Raiho, A.; McLachlan, J. S.; Dietze, M.

2017-12-01

In order to understand long term, unobservable ecosystem processes, ecologists must use both paleoecoloigcal data and ecosystem models. Models parameterize species competitive interactions using modern data. But, modern ecological or physiological observations are not available for extinct species, making it difficult for models to conceptualize their ecology. For instance, American chestnut (Castanea dentata), who played a large role in forests of northeastern US, was decimated by disease to virtual extinction. Since chestnut's demise, defining its ecology has been controversial. Models typically assume that chestnut's ecology was very similar to oak; They parameterize chestnut like oak species. These assumptions are drawn from paleoecological data, but these data are often reported without uncertainty. Since the paleoecological data are often reported without uncertainty, paleoecological data has never been directly incorporated with ecosystem models. We developed a Bayesian statistical model to estimate fractional composition from paleoecological data with uncertainty. Then, we assimilated this data product into an ecosystem model for long term forest succession using a generalized ensemble adjustment filter to determine which species demographic parameters lead to changes in species composition over the last 2,000 years at Harvard Forest. We found that chestnut was strongly negatively correlated with white pine (Pinus strobus) and red oak (Quercus rubra) in the process covariance matrix, suggesting a strong competitive interaction that is not currently understood by models for forest succession. These findings provide support for utilizing a data assimilation framework to ecologically interpret paleoecological data or data products to learn about the ecology of extinct species.

Understanding and estimating effective population size for practical application in marine species management.

Science.gov (United States)

Hare, Matthew P; Nunney, Leonard; Schwartz, Michael K; Ruzzante, Daniel E; Burford, Martha; Waples, Robin S; Ruegg, Kristen; Palstra, Friso

2011-06-01

Effective population size (N(e)) determines the strength of genetic drift in a population and has long been recognized as an important parameter for evaluating conservation status and threats to genetic health of populations. Specifically, an estimate of N(e) is crucial to management because it integrates genetic effects with the life history of the species, allowing for predictions of a population's current and future viability. Nevertheless, compared with ecological and demographic parameters, N(e) has had limited influence on species management, beyond its application in very small populations. Recent developments have substantially improved N(e) estimation; however, some obstacles remain for the practical application of N(e) estimates. For example, the need to define the spatial and temporal scale of measurement makes the concept complex and sometimes difficult to interpret. We reviewed approaches to estimation of N(e) over both long-term and contemporary time frames, clarifying their interpretations with respect to local populations and the global metapopulation. We describe multiple experimental factors affecting robustness of contemporary N(e) estimates and suggest that different sampling designs can be combined to compare largely independent measures of N(e) for improved confidence in the result. Large populations with moderate gene flow pose the greatest challenges to robust estimation of contemporary N(e) and require careful consideration of sampling and analysis to minimize estimator bias. We emphasize the practical utility of estimating N(e) by highlighting its relevance to the adaptive potential of a population and describing applications in management of marine populations, where the focus is not always on critically endangered populations. Two cases discussed include the mechanisms generating N(e) estimates many orders of magnitude lower than census N in harvested marine fishes and the predicted reduction in N(e) from hatchery-based population

Effect of operator and institutional volume on clinical outcomes after percutaneous coronary interventions performed in Canada and the United States: a brief report from the Enhanced Suppression of the Platelet glycoprotein IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) study.

Science.gov (United States)

Madan, Mina; Nikhil, Janarthan; Hellkamp, Anne S; Pieper, Karen S; Labinaz, Marino; Cohen, E A; Buller, Christopher E; Cantor, Warren J; Seidelin, Peter; Ducas, John; Carere, Ronald G; Natarajan, Madhu K; O'Shea, J Conor; Tcheng, James E

2009-08-01

The Enhanced Suppression of the Platelet glycoprotein IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial compared the use of eptifibatide with placebo in 2064 coronary intervention patients. It was previously reported that Canadian patients had reduced rates of 30-day and one-year death, myocardial infarction (MI) or target vessel revascularization (TVR) compared with patients in the United States (US). To examine whether operator or institutional volume differences explain the regional variation in clinical outcome. Each site received an operator and institutional volume survey. Fifty-seven sites (62%) returned complete data on 1338 patients. In this smaller cohort, Canadian patients had reduced rates of 30-day and one-year death, MI or TVR compared with US patients (6.3% versus 10.3% and 14.9% versus 20.1%, respectively; PESPRIT study, institutional volume was associated with a modest reduction in risk of death, MI or TVR over short- and long-term follow-up periods. The Canadian and US investigators and institutions selected in ESPRIT had similar annual procedural volumes. Therefore, volume variables did not explain the differential risk of clinical events observed for patients enrolled in the two countries.

[The Republic of Letters and French physicians on the eve of the French Revolution: the case of Esprit Calvet].

Science.gov (United States)

Brockliss, Laurence

2004-01-01

In the broad Republic of Letters of the second half of the eighteenth century, physicians played an important but singular role. The majority of them were forced to earn their daily bread, so only belonged to the Republic in their leisure hours. Inhabiting a double universe--the everyday world of their profession and the more refined world of their intellectual hobbies--they had to negotiate continually between the two. This liminal position of the citizen-physician is recaptured in this article through the example of a physician of the Midi, Esprit Calvet of Avignon (1728--1810). Calvet left a huge correspondence, thanks to which this duality between the practising physician and the citizen of the Republic of Letters can be studied in detail. On the one hand, this is a correspondence between the physician and his patients, augmented by letters between the physician and other physicians on medical topics. On the other hand, it is a correspondence between the physician and other men of science on non-medical subjects (archaeology, botany, bibliophily, poetry, etc.).

Integrating biology, field logistics, and simulations to optimize parameter estimation for imperiled species

Science.gov (United States)

Lanier, Wendy E.; Bailey, Larissa L.; Muths, Erin L.

2016-01-01

Conservation of imperiled species often requires knowledge of vital rates and population dynamics. However, these can be difficult to estimate for rare species and small populations. This problem is further exacerbated when individuals are not available for detection during some surveys due to limited access, delaying surveys and creating mismatches between the breeding behavior and survey timing. Here we use simulations to explore the impacts of this issue using four hypothetical boreal toad (Anaxyrus boreas boreas) populations, representing combinations of logistical access (accessible, inaccessible) and breeding behavior (synchronous, asynchronous). We examine the bias and precision of survival and breeding probability estimates generated by survey designs that differ in effort and timing for these populations. Our findings indicate that the logistical access of a site and mismatch between the breeding behavior and survey design can greatly limit the ability to yield accurate and precise estimates of survival and breeding probabilities. Simulations similar to what we have performed can help researchers determine an optimal survey design(s) for their system before initiating sampling efforts.

Estimating the global conservation status of more than 15,000 Amazonian tree species

OpenAIRE

ter Steege, H.; et al., [Unknown; Duivenvoorden, J.F.

2015-01-01

Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree species are likely to qualify as globally threatened under International Union for Conservation of Nature (IUCN) Red List criteria. If confirmed, these results would increase the number of threatened ...

Allometric Equations for Estimating Biomass of Euterpe precatoria, the Most Abundant Palm Species in the Amazon

Directory of Open Access Journals (Sweden)

Fernando Da Silva

2015-02-01

Full Text Available Allometric models to estimate biomass components such as stem mass Ms, foliage mass Ml, root mass Mr and aboveground mass Ma, were developed for the palm species Euterpe precatoria Mart., which is the most abundant tree species in the Amazon. We harvested twenty palms including above- and below-ground parts in an old growth Amazonian forest in Brazil. The diameter at breast height D ranged from 3.9–12.7 cm, and the stem height H ranged from 2.3–16.4 m. The D, diameter at ground basis D0, crown diameter CD, H, stem specific gravity ρ, and number of fronds Nf were considered as independent variables and incorporated into a power function model. The best predictors were D2Hρ for Ms and Ma, D2HNf for Ml, and D for Mr. Slender index (H/D ranged from 0.56–1.46 m·cm−1, and the D-H relationship suggested that the stem shape becomes more slender with increasing D. On the other hand, ρ increased with D implying a stiffening of stem tissue. The average root/shoot ratio was estimated as 0.29 which was higher than that reported for the non-palm tree species in the Amazon. Comparisons of several models to estimate Ma of different palm species, suggested that the variations of the D-H relationship and ρ should be considered to develop allometric models for estimating biomass in palm species. In particular the ρ largely varied depending on individual size, which should be important to consider, when developing the allometric models for palms.

Modeling the potential area of occupancy at fine resolution may reduce uncertainty in species range estimates

DEFF Research Database (Denmark)

Jiménez-Alfaro, Borja; Draper, David; Nogues, David Bravo

2012-01-01

and maximum entropy modeling to assess whether different sampling (expert versus systematic surveys) may affect AOO estimates based on habitat suitability maps, and the differences between such measurements and traditional coarse-grid methods. Fine-scale models performed robustly and were not influenced...... by survey protocols, providing similar habitat suitability outputs with high spatial agreement. Model-based estimates of potential AOO were significantly smaller than AOO measures obtained from coarse-scale grids, even if the first were obtained from conservative thresholds based on the Minimal Predicted...... permit comparable measures among species. We conclude that estimates of AOO based on fine-resolution distribution models are more robust tools for risk assessment than traditional systems, allowing a better understanding of species ranges at habitat level....

Diversity-interaction modeling: estimating contributions of species identities and interactions to ecosystem function

DEFF Research Database (Denmark)

Kirwan, L; Connolly, J; Finn, J A

2009-01-01

to the roles of evenness, functional groups, and functional redundancy. These more parsimonious descriptions can be especially useful in identifying general diversity-function relationships in communities with large numbers of species. We provide an example of the application of the modeling framework......We develop a modeling framework that estimates the effects of species identity and diversity on ecosystem function and permits prediction of the diversity-function relationship across different types of community composition. Rather than just measure an overall effect of diversity, we separately....... These models describe community-level performance and thus do not require separate measurement of the performance of individual species. This flexible modeling approach can be tailored to test many hypotheses in biodiversity research and can suggest the interaction mechanisms that may be acting....

Estimating radionuclide transfer to wild species-data requirements and availability for terrestrial ecosystems

International Nuclear Information System (INIS)

Beresford, N A; Broadley, M R; Howard, B J; Barnett, C L; White, P J

2004-01-01

Assessment of the transfer of radionuclides to wild species is an important component in the estimation of predicted doses to biota. Reviews of available data for the many potential radionuclide-biota combinations which may be required for environmental assessments highlight many data gaps for terrestrial species. Here, we discuss different approaches which have been suggested to compensate for these data gaps. All of the reviewed approaches have merit; however, there is a requirement for transparency in methodology and data provenance which in some instances is currently missing. Furthermore, there is a need to validate the various methodologies to enable their use with confidence. The requirements of improving our ability to predict radionuclide transfer to wild species are discussed and recommendations made

A new framework for analysing automated acoustic species-detection data: occupancy estimation and optimization of recordings post-processing

Science.gov (United States)

Chambert, Thierry A.; Waddle, J. Hardin; Miller, David A.W.; Walls, Susan; Nichols, James D.

2018-01-01

The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing with the different types of detection errors.We developed a hierarchical modelling framework for estimating species occupancy from automated species-detection data. We explore design and optimization of data post-processing procedures to account for detection errors and generate accurate estimates. Our proposed method accounts for both imperfect detection and false positive errors and utilizes information about both occurrence and abundance of detections to improve estimation.Using simulations, we show that our method provides much more accurate estimates than models ignoring the abundance of detections. The same findings are reached when we apply the methods to two real datasets on North American frogs surveyed with acoustic recorders.When false positives occur, estimator accuracy can be improved when a subset of detections produced by the classification algorithm is post-validated by a human observer. We use simulations to investigate the relationship between accuracy and effort spent on post-validation, and found that very accurate occupancy estimates can be obtained with as little as 1% of data being validated.Automated monitoring of wildlife provides opportunity and challenges. Our methods for analysing automated species-detection data help to meet key challenges unique to these data and will prove useful for many wildlife monitoring programs.

Estimating the global conservation status of more than 15,000 Amazonian tree species

Science.gov (United States)

ter Steege, Hans; Pitman, Nigel C. A.; Killeen, Timothy J.; Laurance, William F.; Peres, Carlos A.; Guevara, Juan Ernesto; Salomão, Rafael P.; Castilho, Carolina V.; Amaral, Iêda Leão; de Almeida Matos, Francisca Dionízia; de Souza Coelho, Luiz; Magnusson, William E.; Phillips, Oliver L.; de Andrade Lima Filho, Diogenes; de Jesus Veiga Carim, Marcelo; Irume, Mariana Victória; Martins, Maria Pires; Molino, Jean-François; Sabatier, Daniel; Wittmann, Florian; López, Dairon Cárdenas; da Silva Guimarães, José Renan; Mendoza, Abel Monteagudo; Vargas, Percy Núñez; Manzatto, Angelo Gilberto; Reis, Neidiane Farias Costa; Terborgh, John; Casula, Katia Regina; Montero, Juan Carlos; Feldpausch, Ted R.; Honorio Coronado, Euridice N.; Montoya, Alvaro Javier Duque; Zartman, Charles Eugene; Mostacedo, Bonifacio; Vasquez, Rodolfo; Assis, Rafael L.; Medeiros, Marcelo Brilhante; Simon, Marcelo Fragomeni; Andrade, Ana; Camargo, José Luís; Laurance, Susan G. W.; Nascimento, Henrique Eduardo Mendonça; Marimon, Beatriz S.; Marimon, Ben-Hur; Costa, Flávia; Targhetta, Natalia; Vieira, Ima Célia Guimarães; Brienen, Roel; Castellanos, Hernán; Duivenvoorden, Joost F.; Mogollón, Hugo F.; Piedade, Maria Teresa Fernandez; Aymard C., Gerardo A.; Comiskey, James A.; Damasco, Gabriel; Dávila, Nállarett; García-Villacorta, Roosevelt; Diaz, Pablo Roberto Stevenson; Vincentini, Alberto; Emilio, Thaise; Levis, Carolina; Schietti, Juliana; Souza, Priscila; Alonso, Alfonso; Dallmeier, Francisco; Ferreira, Leandro Valle; Neill, David; Araujo-Murakami, Alejandro; Arroyo, Luzmila; Carvalho, Fernanda Antunes; Souza, Fernanda Coelho; do Amaral, Dário Dantas; Gribel, Rogerio; Luize, Bruno Garcia; Pansonato, Marcelo Petrati; Venticinque, Eduardo; Fine, Paul; Toledo, Marisol; Baraloto, Chris; Cerón, Carlos; Engel, Julien; Henkel, Terry W.; Jimenez, Eliana M.; Maas, Paul; Mora, Maria Cristina Peñuela; Petronelli, Pascal; Revilla, Juan David Cardenas; Silveira, Marcos; Stropp, Juliana; Thomas-Caesar, Raquel; Baker, Tim R.; Daly, Doug; Paredes, Marcos Ríos; da Silva, Naara Ferreira; Fuentes, Alfredo; Jørgensen, Peter Møller; Schöngart, Jochen; Silman, Miles R.; Arboleda, Nicolás Castaño; Cintra, Bruno Barçante Ladvocat; Valverde, Fernando Cornejo; Di Fiore, Anthony; Phillips, Juan Fernando; van Andel, Tinde R.; von Hildebrand, Patricio; Barbosa, Edelcilio Marques; de Matos Bonates, Luiz Carlos; de Castro, Deborah; de Sousa Farias, Emanuelle; Gonzales, Therany; Guillaumet, Jean-Louis; Hoffman, Bruce; Malhi, Yadvinder; de Andrade Miranda, Ires Paula; Prieto, Adriana; Rudas, Agustín; Ruschell, Ademir R.; Silva, Natalino; Vela, César I. A.; Vos, Vincent A.; Zent, Eglée L.; Zent, Stanford; Cano, Angela; Nascimento, Marcelo Trindade; Oliveira, Alexandre A.; Ramirez-Angulo, Hirma; Ramos, José Ferreira; Sierra, Rodrigo; Tirado, Milton; Medina, Maria Natalia Umaña; van der Heijden, Geertje; Torre, Emilio Vilanova; Vriesendorp, Corine; Wang, Ophelia; Young, Kenneth R.; Baider, Claudia; Balslev, Henrik; de Castro, Natalia; Farfan-Rios, William; Ferreira, Cid; Mendoza, Casimiro; Mesones, Italo; Torres-Lezama, Armando; Giraldo, Ligia Estela Urrego; Villarroel, Daniel; Zagt, Roderick; Alexiades, Miguel N.; Garcia-Cabrera, Karina; Hernandez, Lionel; Huamantupa-Chuquimaco, Isau; Milliken, William; Cuenca, Walter Palacios; Pansini, Susamar; Pauletto, Daniela; Arevalo, Freddy Ramirez; Sampaio, Adeilza Felipe; Valderrama Sandoval, Elvis H.; Gamarra, Luis Valenzuela

2015-01-01

Estimates of extinction risk for Amazonian plant and animal species are rare and not often incorporated into land-use policy and conservation planning. We overlay spatial distribution models with historical and projected deforestation to show that at least 36% and up to 57% of all Amazonian tree species are likely to qualify as globally threatened under International Union for Conservation of Nature (IUCN) Red List criteria. If confirmed, these results would increase the number of threatened plant species on Earth by 22%. We show that the trends observed in Amazonia apply to trees throughout the tropics, and we predict that most of the world’s >40,000 tropical tree species now qualify as globally threatened. A gap analysis suggests that existing Amazonian protected areas and indigenous territories will protect viable populations of most threatened species if these areas suffer no further degradation, highlighting the key roles that protected areas, indigenous peoples, and improved governance can play in preventing large-scale extinctions in the tropics in this century. PMID:26702442

An evaluation of species richness estimators for tardigrades of the Great Smoky Mountains National Park, Tennessee and North Carolina, USA

Directory of Open Access Journals (Sweden)

Diane R. NELSON

2007-09-01

Full Text Available For the past 5 years we have been conducting a large-scale, multi-habitat inventory of the tardigrades in the Great Smoky Mountains National Park (U.S.A. as part of the All Taxa Biodiversity Inventory (ATBI (see www.dlia.org. In terrestrial habitats, we collected moss, lichen, and soil samples from 19 permanent ATBI plots, representing all major land cover types within the park. Each ATBI plot is 100 × 100 m. In each plot, when available, 16 moss samples, 16 lichen samples, and 4 soil samples were collected in paper bags and air dried in the laboratory. Specimens were isolated with LudoxAM centrifugation, and for each sample up to 50 adults plus eggs were individually mounted on microscope slides in Hoyer's medium and identified using phase contrast and DIC microscopy. Additional collections were made in the limestone caves of the Cades Cove region of the park, bird nests, and 13 different streams. To date (1-Jun-06, 589 samples have been collected, and of these 401 have been analyzed, yielding a total of 8133 identifiable tardigrades or, in some cases, species groups. A total of 73 species have been found in the park, 14 of which we believe are new to science. Seven species richness estimators have been developed to predict total species richness (see EstimateS 7.5 software, viceroy.eeb.uconn.edu/estimates, and these were evaluated by comparing predictions from half of our data to the actual numbers from the total database. The results of this comparison indicate that different estimators work best in different habitats. Using the best estimators in each habitat, EstimateS 7.5 indicates that a total of 96 species are likely to occur throughout the park. Thus, Great Smoky Mountains National Park tardigrade diversity represents 10% of the world's known tardigrade fauna.

Semi-quantitative estimation by IR of framework, extraframework and defect Al species of HBEA zeolites.

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Marques, João P; Gener, Isabelle; Ayrault, Philippe; Lopes, José M; Ribeiro, F Ramôa; Guisnet, Michel

2004-10-21

A simple method based on the characterization (composition, Bronsted and Lewis acidities) of acid treated HBEA zeolites was developed for estimating the concentrations of framework, extraframework and defect Al species.

ORF-selector ESPRIT: a second generation library screen for soluble protein expression employing precise open reading frame selection.

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An, Yingfeng; Yumerefendi, Hayretin; Mas, Philippe J; Chesneau, Alban; Hart, Darren J

2011-08-01

Here we present ORF-selector ESPRIT, a 9-fold enhanced version of our technology for screening incremental truncation libraries to identify soluble high yielding constructs of challenging proteins. Gene fragments are truncated at both termini to access internal domains and the resulting reading frame problem is addressed by an unbiased, intein-based open reading frame selection yielding only in-frame DNA inserts. This enriched library is then subcloned into a standard high-level expression plasmid where tens of thousands of constructs can be assayed in a two-step process using colony- and liquid-handling robots to isolate rare highly expressing clones useful for production of multi milligram quantities of purifiable proteins. The p85α protein was used to benchmark the system resulting in isolation of all known domains, either alone or in tandem. The human kinase IKK1 was then screened resulting in purification of a predicted internal domain. This strategy provides an integrated, facile route to produce soluble proteins from challenging and poorly understood target genes at quantities compatible with structural biology, screening applications and immunisation studies. The high genetic diversity that can be sampled opens the way to study more diverse systems including multisubunit complexes. Copyright © 2011 Elsevier Inc. All rights reserved.

Theoretical implications for the estimation of dinitrogen fixation by large perennial plant species using isotope dilution

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Dwight D. Baker; Maurice Fried; John A. Parrotta

1995-01-01

Estimation of symbiotic N2 fixation associated with large perennial plant species, especially trees, poses special problems because the process must be followed over a potentially long period of time to integrate the total amount of fixation. Estimations using isotope dilution methodology have begun to be used for trees in field studies. Because...

Spatially-explicit estimation of geographical representation in large-scale species distribution datasets.

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Kalwij, Jesse M; Robertson, Mark P; Ronk, Argo; Zobel, Martin; Pärtel, Meelis

2014-01-01

Much ecological research relies on existing multispecies distribution datasets. Such datasets, however, can vary considerably in quality, extent, resolution or taxonomic coverage. We provide a framework for a spatially-explicit evaluation of geographical representation within large-scale species distribution datasets, using the comparison of an occurrence atlas with a range atlas dataset as a working example. Specifically, we compared occurrence maps for 3773 taxa from the widely-used Atlas Florae Europaeae (AFE) with digitised range maps for 2049 taxa of the lesser-known Atlas of North European Vascular Plants. We calculated the level of agreement at a 50-km spatial resolution using average latitudinal and longitudinal species range, and area of occupancy. Agreement in species distribution was calculated and mapped using Jaccard similarity index and a reduced major axis (RMA) regression analysis of species richness between the entire atlases (5221 taxa in total) and between co-occurring species (601 taxa). We found no difference in distribution ranges or in the area of occupancy frequency distribution, indicating that atlases were sufficiently overlapping for a valid comparison. The similarity index map showed high levels of agreement for central, western, and northern Europe. The RMA regression confirmed that geographical representation of AFE was low in areas with a sparse data recording history (e.g., Russia, Belarus and the Ukraine). For co-occurring species in south-eastern Europe, however, the Atlas of North European Vascular Plants showed remarkably higher richness estimations. Geographical representation of atlas data can be much more heterogeneous than often assumed. Level of agreement between datasets can be used to evaluate geographical representation within datasets. Merging atlases into a single dataset is worthwhile in spite of methodological differences, and helps to fill gaps in our knowledge of species distribution ranges. Species distribution

Application of DNA barcoding in biodiversity studies of shallow-water octocorals: molecular proxies agree with morphological estimates of species richness in Palau

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McFadden, C. S.; Brown, A. S.; Brayton, C.; Hunt, C. B.; van Ofwegen, L. P.

2014-06-01

The application of DNA barcoding to anthozoan cnidarians has been hindered by their slow rates of mitochondrial gene evolution and the failure to identify alternative molecular markers that distinguish species reliably. Among octocorals, however, multilocus barcodes can distinguish up to 70 % of morphospecies, thereby facilitating the identification of species that are ecologically important but still very poorly known taxonomically. We tested the ability of these imperfect DNA barcodes to estimate species richness in a biodiversity survey of the shallow-water octocoral fauna of Palau using multilocus ( COI, mtMutS, 28S rDNA) sequences obtained from 305 specimens representing 38 genera of octocorals. Numbers and identities of species were estimated independently (1) by a taxonomic expert using morphological criteria and (2) by assigning sequences to molecular operational taxonomic units (MOTUs) using predefined genetic distance thresholds. Estimated numbers of MOTUs ranged from 73 to 128 depending on the barcode and distance threshold applied, bracketing the estimated number of 118 morphospecies. Concordance between morphospecies identifications and MOTUs ranged from 71 to 75 % and differed little among barcodes. For the speciose and ecologically dominant genus Sinularia, however, we were able to identify 95 % of specimens correctly simply by comparing mtMutS sequences and in situ photographs of colonies to an existing vouchered database. Because we lack a clear understanding of species boundaries in most of these taxa, numbers of morphospecies and MOTUs are both estimates of the true species diversity, and we cannot currently determine which is more accurate. Our results suggest, however, that the two methods provide comparable estimates of species richness for shallow-water Indo-Pacific octocorals. Use of molecular barcodes in biodiversity surveys will facilitate comparisons of species richness and composition among localities and over time, data that do not

Estimating density of a rare and cryptic high-mountain Galliform species, the Buff-throated Partridge Tetraophasis szechenyii

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Yu Xu

2016-06-01

Full Text Available Estimates of abundance or density are essential for wildlife management and conservation. There are few effective density estimates for the Buff-throated Partridge Tetraophasis szechenyii, a rare and elusive high-mountain Galliform species endemic to western China. In this study, we used the temporary emigration N-mixture model to estimate density of this species, with data acquired from playback point count surveys around a sacred area based on indigenous Tibetan culture of protection of wildlife, in Yajiang County, Sichuan, China, during April-June 2009. Within 84 125-m radius points, we recorded 53 partridge groups during three repeats. The best model indicated that detection probability was described by covariates of vegetation cover type, week of visit, time of day, and weather with weak effects, and a partridge group was present during a sampling period with a constant probability. The abundance component was accounted for by vegetation association. Abundance was substantially higher in rhododendron shrubs, fir-larch forests, mixed spruce-larch-birch forests, and especially oak thickets than in pine forests. The model predicted a density of 5.14 groups/km², which is similar to an estimate of 4.7 - 5.3 groups/km² quantified via an intensive spot-mapping effort. The post-hoc estimate of individual density was 14.44 individuals/km², based on the estimated mean group size of 2.81. We suggest that the method we employed is applicable to estimate densities of Buff-throated Partridges in large areas. Given importance of a mosaic habitat for this species, local logging should be regulated. Despite no effect of the conservation area (sacred on the abundance of Buff-throated Partridges, we suggest regulations linking the sacred mountain conservation area with the official conservation system because of strong local participation facilitated by sacred mountains in land conservation.

Extant diversity and estimated number of Gracillariidae (Lepidoptera species yet to be discovered in the Neotropical region

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Rosângela Brito

Full Text Available ABSTRACT Gracillariidae (Lepidoptera are commonly known by the leaf miner habit found in the larval stage of most species. By using worldwide, public databases on species diversity and DNA sequences available for extant gracillariid species, we determined changes in the rate of taxonomic species descriptions through time, mapped their spatial distributions, examined their phylogenetic diversification, and estimated the number of species yet to be described for the family in the Neotropics. We recovered 185 species, a number that is smaller than that found in any other biogeographic region. However, it was estimated that at least 3875 additional species remain to be described in the region. Phylogenetic diversification showed a pattern of expanding diversity. A few entomologists have been involved with gracillariid taxonomy in the Neotropics, having 39% of the species been described by a single taxonomist. In most of such cases, descriptions were based on the adults only. A few species have been described from biomes known to have some of the greatest diversity on earth, such as the Atlantic Forest. Thus, such a scenario results from low sampling and scarce taxonomic activity that has prevailed for this family of moths in the Neotropics. It may also be associated with their small body size and to the fact that gracillariids do not seem to be attracted to light traps as much as other moths, which make their collection and identification by non experts difficult. We also suggested scientific and political actions that could be adopted to overcome such an unfavorable scenario.

A New Method for Estimating the Number of Harmonic Components in Noise with Application in High Resolution Radar

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Radoi Emanuel

2004-01-01

Full Text Available In order to operate properly, the superresolution methods based on orthogonal subspace decomposition, such as multiple signal classification (MUSIC or estimation of signal parameters by rotational invariance techniques (ESPRIT, need accurate estimation of the signal subspace dimension, that is, of the number of harmonic components that are superimposed and corrupted by noise. This estimation is particularly difficult when the S/N ratio is low and the statistical properties of the noise are unknown. Moreover, in some applications such as radar imagery, it is very important to avoid underestimation of the number of harmonic components which are associated to the target scattering centers. In this paper, we propose an effective method for the estimation of the signal subspace dimension which is able to operate against colored noise with performances superior to those exhibited by the classical information theoretic criteria of Akaike and Rissanen. The capabilities of the new method are demonstrated through computer simulations and it is proved that compared to three other methods it carries out the best trade-off from four points of view, S/N ratio in white noise, frequency band of colored noise, dynamic range of the harmonic component amplitudes, and computing time.

Estimating the effect of the reorganization of interactions on the adaptability of species to changing environments.

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Cenci, Simone; Montero-Castaño, Ana; Saavedra, Serguei

2018-01-21

A major challenge in community ecology is to understand how species respond to environmental changes. Previous studies have shown that the reorganization of interactions among co-occurring species can modulate their chances to adapt to novel environmental conditions. Moreover, empirical evidence has shown that these ecological dynamics typically facilitate the persistence of groups of species rather than entire communities. However, so far, we have no systematic methodology to identify those groups of species with the highest or lowest chances to adapt to new environments through a reorganization of their interactions. Yet, this could prove extremely valuable for developing new conservation strategies. Here, we introduce a theoretical framework to estimate the effect of the reorganization of interactions on the adaptability of a group of species, within a community, to novel environmental conditions. We introduce the concept of the adaptation space of a group of species based on a feasibility analysis of a population dynamics model. We define the adaptation space of a group as the set of environmental conditions that can be made compatible with its persistence thorough the reorganization of interactions among species within the group. The larger the adaptation space of a group, the larger its likelihood to adapt to a novel environment. We show that the interactions in the community outside a group can act as structural constraints and be used to quantitatively compare the size of the adaptation space among different groups of species within a community. To test our theoretical framework, we perform a data analysis on several pairs of natural and artificially perturbed ecological communities. Overall, we find that the groups of species present in both control and perturbed communities are among the ones with the largest adaptation space. We believe that the results derived from our framework point out towards new directions to understand and estimate the

Estimation of isolation times of the island species in the Drosophila simulans complex from multilocus DNA sequence data.

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Shannon R McDermott

2008-06-01

Full Text Available The Drosophila simulans species complex continues to serve as an important model system for the study of new species formation. The complex is comprised of the cosmopolitan species, D. simulans, and two island endemics, D. mauritiana and D. sechellia. A substantial amount of effort has gone into reconstructing the natural history of the complex, in part to infer the context in which functional divergence among the species has arisen. In this regard, a key parameter to be estimated is the initial isolation time (t of each island species. Loci in regions of low recombination have lower divergence within the complex than do other loci, yet divergence from D. melanogaster is similar for both classes. This might reflect gene flow of the low-recombination loci subsequent to initial isolation, but it might also reflect differential effects of changing population size on the two recombination classes of loci when the low-recombination loci are subject to genetic hitchhiking or pseudohitchhikingNew DNA sequence variation data for 17 loci corroborate the prior observation from 13 loci that DNA sequence divergence is reduced in genes of low recombination. Two models are presented to estimate t and other relevant parameters (substitution rate correction factors in lineages leading to the island species and, in the case of the 4-parameter model, the ratio of ancestral to extant effective population size from the multilocus DNA sequence data.In general, it appears that both island species were isolated at about the same time, here estimated at approximately 250,000 years ago. It also appears that the difference in divergence patterns of genes in regions of low and higher recombination can be reconciled by allowing a modestly larger effective population size for the ancestral population than for extant D. simulans.

Evaluating species richness: biased ecological inference results from spatial heterogeneity in species detection probabilities

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McNew, Lance B.; Handel, Colleen M.

2015-01-01

Accurate estimates of species richness are necessary to test predictions of ecological theory and evaluate biodiversity for conservation purposes. However, species richness is difficult to measure in the field because some species will almost always be overlooked due to their cryptic nature or the observer's failure to perceive their cues. Common measures of species richness that assume consistent observability across species are inviting because they may require only single counts of species at survey sites. Single-visit estimation methods ignore spatial and temporal variation in species detection probabilities related to survey or site conditions that may confound estimates of species richness. We used simulated and empirical data to evaluate the bias and precision of raw species counts, the limiting forms of jackknife and Chao estimators, and multi-species occupancy models when estimating species richness to evaluate whether the choice of estimator can affect inferences about the relationships between environmental conditions and community size under variable detection processes. Four simulated scenarios with realistic and variable detection processes were considered. Results of simulations indicated that (1) raw species counts were always biased low, (2) single-visit jackknife and Chao estimators were significantly biased regardless of detection process, (3) multispecies occupancy models were more precise and generally less biased than the jackknife and Chao estimators, and (4) spatial heterogeneity resulting from the effects of a site covariate on species detection probabilities had significant impacts on the inferred relationships between species richness and a spatially explicit environmental condition. For a real dataset of bird observations in northwestern Alaska, the four estimation methods produced different estimates of local species richness, which severely affected inferences about the effects of shrubs on local avian richness. Overall, our results

Evaluation of species richness estimators based on quantitative performance measures and sensitivity to patchiness and sample grain size

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Willie, Jacob; Petre, Charles-Albert; Tagg, Nikki; Lens, Luc

2012-11-01

Data from forest herbaceous plants in a site of known species richness in Cameroon were used to test the performance of rarefaction and eight species richness estimators (ACE, ICE, Chao1, Chao2, Jack1, Jack2, Bootstrap and MM). Bias, accuracy, precision and sensitivity to patchiness and sample grain size were the evaluation criteria. An evaluation of the effects of sampling effort and patchiness on diversity estimation is also provided. Stems were identified and counted in linear series of 1-m2 contiguous square plots distributed in six habitat types. Initially, 500 plots were sampled in each habitat type. The sampling process was monitored using rarefaction and a set of richness estimator curves. Curves from the first dataset suggested adequate sampling in riparian forest only. Additional plots ranging from 523 to 2143 were subsequently added in the undersampled habitats until most of the curves stabilized. Jack1 and ICE, the non-parametric richness estimators, performed better, being more accurate and less sensitive to patchiness and sample grain size, and significantly reducing biases that could not be detected by rarefaction and other estimators. This study confirms the usefulness of non-parametric incidence-based estimators, and recommends Jack1 or ICE alongside rarefaction while describing taxon richness and comparing results across areas sampled using similar or different grain sizes. As patchiness varied across habitat types, accurate estimations of diversity did not require the same number of plots. The number of samples needed to fully capture diversity is not necessarily the same across habitats, and can only be known when taxon sampling curves have indicated adequate sampling. Differences in observed species richness between habitats were generally due to differences in patchiness, except between two habitats where they resulted from differences in abundance. We suggest that communities should first be sampled thoroughly using appropriate taxon sampling

Wearable Sensor Localization Considering Mixed Distributed Sources in Health Monitoring Systems.

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Wan, Liangtian; Han, Guangjie; Wang, Hao; Shu, Lei; Feng, Nanxing; Peng, Bao

2016-03-12

In health monitoring systems, the base station (BS) and the wearable sensors communicate with each other to construct a virtual multiple input and multiple output (VMIMO) system. In real applications, the signal that the BS received is a distributed source because of the scattering, reflection, diffraction and refraction in the propagation path. In this paper, a 2D direction-of-arrival (DOA) estimation algorithm for incoherently-distributed (ID) and coherently-distributed (CD) sources is proposed based on multiple VMIMO systems. ID and CD sources are separated through the second-order blind identification (SOBI) algorithm. The traditional estimating signal parameters via the rotational invariance technique (ESPRIT)-based algorithm is valid only for one-dimensional (1D) DOA estimation for the ID source. By constructing the signal subspace, two rotational invariant relationships are constructed. Then, we extend the ESPRIT to estimate 2D DOAs for ID sources. For DOA estimation of CD sources, two rational invariance relationships are constructed based on the application of generalized steering vectors (GSVs). Then, the ESPRIT-based algorithm is used for estimating the eigenvalues of two rational invariance matrices, which contain the angular parameters. The expressions of azimuth and elevation for ID and CD sources have closed forms, which means that the spectrum peak searching is avoided. Therefore, compared to the traditional 2D DOA estimation algorithms, the proposed algorithm imposes significantly low computational complexity. The intersecting point of two rays, which come from two different directions measured by two uniform rectangle arrays (URA), can be regarded as the location of the biosensor (wearable sensor). Three BSs adopting the smart antenna (SA) technique cooperate with each other to locate the wearable sensors using the angulation positioning method. Simulation results demonstrate the effectiveness of the proposed algorithm.

Fast Estimation Method of Space-Time Two-Dimensional Positioning Parameters Based on Hadamard Product

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Haiwen Li

2018-01-01

Full Text Available The estimation speed of positioning parameters determines the effectiveness of the positioning system. The time of arrival (TOA and direction of arrival (DOA parameters can be estimated by the space-time two-dimensional multiple signal classification (2D-MUSIC algorithm for array antenna. However, this algorithm needs much time to complete the two-dimensional pseudo spectral peak search, which makes it difficult to apply in practice. Aiming at solving this problem, a fast estimation method of space-time two-dimensional positioning parameters based on Hadamard product is proposed in orthogonal frequency division multiplexing (OFDM system, and the Cramer-Rao bound (CRB is also presented. Firstly, according to the channel frequency domain response vector of each array, the channel frequency domain estimation vector is constructed using the Hadamard product form containing location information. Then, the autocorrelation matrix of the channel response vector for the extended array element in frequency domain and the noise subspace are calculated successively. Finally, by combining the closed-form solution and parameter pairing, the fast joint estimation for time delay and arrival direction is accomplished. The theoretical analysis and simulation results show that the proposed algorithm can significantly reduce the computational complexity and guarantee that the estimation accuracy is not only better than estimating signal parameters via rotational invariance techniques (ESPRIT algorithm and 2D matrix pencil (MP algorithm but also close to 2D-MUSIC algorithm. Moreover, the proposed algorithm also has certain adaptability to multipath environment and effectively improves the ability of fast acquisition of location parameters.

Computationally efficient near-field source localization using third-order moments

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Chen, Jian; Liu, Guohong; Sun, Xiaoying

2014-12-01

In this paper, a third-order moment-based estimation of signal parameters via rotational invariance techniques (ESPRIT) algorithm is proposed for passive localization of near-field sources. By properly choosing sensor outputs of the symmetric uniform linear array, two special third-order moment matrices are constructed, in which the steering matrix is the function of electric angle γ, while the rotational factor is the function of electric angles γ and ϕ. With the singular value decomposition (SVD) operation, all direction-of-arrivals (DOAs) are estimated from a polynomial rooting version. After substituting the DOA information into the steering matrix, the rotational factor is determined via the total least squares (TLS) version, and the related range estimations are performed. Compared with the high-order ESPRIT method, the proposed algorithm requires a lower computational burden, and it avoids the parameter-match procedure. Computer simulations are carried out to demonstrate the performance of the proposed algorithm.

The feasibility of clinical endpoint trials in HIV infection in the highly active antiretroviral treatment (HAART) era

DEFF Research Database (Denmark)

Mocroft, A; Neaton, J; Bebchuk, J

2006-01-01

the assumptions used in designing ESPRIT, a large randomized clinical trial assessing the clinical benefit of interleukin-2 treatment in patients with HIV infection, to use EuroSIDA to mimic the inclusion criterion of ESPRIT in order to compare the observed event rate in ESPRIT with the projected rate in EuroSIDA......, and to project the required length of ESPRIT. METHODS: Patients in EuroSIDA who satisfied the ESPRIT recruitment criteria were selected. Patients were followed from baseline to new AIDS or death. RESULTS: The incidence of clinical progression in the selected EuroSIDA patients (N = 4482) was 1.5 per 100 PYFU (95...... follow-up required to complete ESPRIT and accrue the 320 events required by protocol would be seven years, 10 months using the projected rates from the EuroSIDA study, and seven years, 11 months if the observed event rate in ESPRIT continued unchanged. LIMITATIONS: Differences between patients recruited...

Relationship between heparin anticoagulation and clinical outcomes in coronary stent intervention: observations from the ESPRIT trial.

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Tolleson, Thaddeus R; O'Shea, J Conor; Bittl, John A; Hillegass, William B; Williams, Kathryn A; Levine, Glenn; Harrington, Robert A; Tcheng, James E

2003-02-05

We evaluated the relationship between the degree of heparin anticoagulation and clinical efficacy and bleeding in patients undergoing contemporary percutaneous coronary intervention (PCI) with stent implantation. Despite universal acceptance of heparin anticoagulation as a standard of care in PCI, considerable controversy still exists regarding the appropriate dosing of heparin. The study population (n = 2,064) comprised all patients enrolled in the Enhanced Suppression of the Platelet IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial. The index activated clotting time (ACT) was defined as the ACT measured after the last heparin dose and before first device activation and was correlated with outcome and bleeding events. No association was observed between decreasing ACT levels and the rate of ischemic events in the treatment or placebo arms. The incidence of the primary composite end point (death, myocardial infarction, urgent target vessel revascularization, and thrombotic bailout glycoprotein IIb/IIIa inhibitor therapy at 48 h) was actually lowest in the lowest ACT tertile for both the placebo (10.0%) and treatment groups (6.1%). When analyzed by tertile, major bleeding rates did not increase in the lowest ACT tertile in patients given placebo (0.6%) versus those receiving eptifibatide (0.7%). Major bleeding rates increased as the ACT increased in the eptifibatide-treated patients. Ischemic end points in patients undergoing contemporary PCI with stent placement do not increase by decreasing ACT levels, at least to a level of 200 s. Bleeding events do increase with increasing ACT levels and are enhanced with eptifibatide treatment. An ACT of 200 to 250 s is reasonable in terms of efficacy and safety with the use of contemporary technology and pharmacotherapy.

The influence of study species selection on estimates of pesticide exposure in free-ranging birds

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Borges, Shannon L.; Vyas, Nimish B.; Christman, Mary C.

2014-01-01

Field studies of pesticide effects on birds often utilize indicator species with the purpose 16 of extrapolating to other avian taxa. Little guidance exists for choosing indicator species to 17 monitor the presence and/or effects of contaminants that are labile in the environment or body, 18 but are acutely toxic, such as anticholinesterase (anti-ChE) insecticides. Use of an indicator 19 species that does not represent maximum exposure and/or effects could lead to inaccurate risk 20 estimates. Our objective was to test the relevance of a priori selection of indicator species for a 21 study on pesticide exposure to birds inhabiting fruit orchards. We used total plasma 22 cholinesterase (ChE) activity and ChE reactivation to describe the variability in anti-ChE exposure among avian species in two conventionally managed fruit orchards. Of seven 24 species included in statistical analyses, the less common species, chipping sparrow (Spizella 25 passerina), showed the greatest percentage of exposed individuals and the greatest ChE 26 depression, whereas the two most common species, American robins (Turdus migratorius) and 27 grey catbirds (Dumatella carolinensis), did not show significant exposure. Due to their lower 28 abundance, chipping sparrows would have been an unlikely choice for study. Our results show 29 that selection of indicator species using traditionally accepted criteria such as abundance and 30 ease of collection may not identify species that are at greatest risk. Our efforts also demonstrate 31 the usefulness of conducting multiple-species pilot studies prior to initiating detailed studies on 32 pesticide effects. A study such as ours can help focus research and resources on study species 33 that are most appropriate.

A Novel Modification of PSO Algorithm for SML Estimation of DOA

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Haihua Chen

2016-12-01

Full Text Available This paper addresses the issue of reducing the computational complexity of Stochastic Maximum Likelihood (SML estimation of Direction-of-Arrival (DOA. The SML algorithm is well-known for its high accuracy of DOA estimation in sensor array signal processing. However, its computational complexity is very high because the estimation of SML criteria is a multi-dimensional non-linear optimization problem. As a result, it is hard to apply the SML algorithm to real systems. The Particle Swarm Optimization (PSO algorithm is considered as a rather efficient method for multi-dimensional non-linear optimization problems in DOA estimation. However, the conventional PSO algorithm suffers two defects, namely, too many particles and too many iteration times. Therefore, the computational complexity of SML estimation using conventional PSO algorithm is still a little high. To overcome these two defects and to reduce computational complexity further, this paper proposes a novel modification of the conventional PSO algorithm for SML estimation and we call it Joint-PSO algorithm. The core idea of the modification lies in that it uses the solution of Estimation of Signal Parameters via Rotational Invariance Techniques (ESPRIT and stochastic Cramer-Rao bound (CRB to determine a novel initialization space. Since this initialization space is already close to the solution of SML, fewer particles and fewer iteration times are needed. As a result, the computational complexity can be greatly reduced. In simulation, we compare the proposed algorithm with the conventional PSO algorithm, the classic Altering Minimization (AM algorithm and Genetic algorithm (GA. Simulation results show that our proposed algorithm is one of the most efficient solving algorithms and it shows great potential for the application of SML in real systems.

Global estimation of areas with suitable environmental conditions for mariculture species.

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Muhammed A Oyinlola

Full Text Available Aquaculture has grown rapidly over the last three decades expanding at an average annual growth rate of 5.8% (2005-2014, down from 8.8% achieved between 1980 and 2010. The sector now produces 44% of total food fish production. Increasing demand and consumption from a growing global population are driving further expansion of both inland and marine aquaculture (i.e., mariculture, including marine species farmed on land. However, the growth of mariculture is dependent on the availability of suitable farming areas for new facilities, particularly for open farming practices that rely on the natural oceanic environmental parameters such as temperature, oxygen, chlorophyll etc. In this study, we estimated the marine areas within the exclusive economic zones of all countries that were suitable for potential open ocean mariculture activities. To this end, we quantify the environmental niche and inferred the global habitat suitability index (HSI of the 102 most farmed marine species using four species distribution models. The average weighted HSI across the four models suggests that 72,000,000 km2 of ocean are to be environmentally suitable to farm one or more species. About 92% of the predicted area (66,000,000 km2 is environmentally suitable for farming finfish, 43% (31,000,000 km2 for molluscs and 54% (39,000,000 km2 for crustaceans. These predictions do not consider technological feasibility that can limit crustaceans farming in open waters. Suitable mariculture areas along the Atlantic coast of South America and West Africa appear to be most under-utilized for farming. Our results suggest that factors other than environmental considerations such as the lack of socio-economic and technological capacity, as well as aqua feed supply are currently limiting the potential for mariculture expansion in many areas.

[No role for oral anticoagulants (target INR: 2.0-3.0) after transient ischaemic attack or cerebral infarction of arterial origin; the 'European/Australasian stroke prevention in reversible ischaemia trial' (ESPRIT)].

Science.gov (United States)

De Schryver, E L L M; Halkes, P H A

2008-02-23

The 'European/Australasian stroke prevention in reversible ischaemia trial' (ESPRIT) aimed to determine whether oral anticoagulation of moderate intensity (target international normalised ratio (INR): 2.0-3.0) is more effective than acetylsalicylic acid in preventing future vascular events in patients with transient ischaemic attack (TIA) or minor stroke of arterial origin. International, multicentre randomised clinical trial. Patients were randomised within 6 months of TIA or minor stroke of arterial origin to oral anticoagulants (target INR: 2.0-3.0; n = 536) or acetylsalicylic acid (30-325 mg daily; n = 532). The primary endpoint was a composite of vascular death, non-fatal stroke, non-fatal myocardial infarction or major bleeding complications. In a post hoc analysis, the efficacy of anticoagulants was compared with that of the combination of acetylsalicylic acid and dipyridamole (200 mg twice daily), a third arm of ESPRIT. Treatment was unblinded, but auditing of endpoints was blinded. Data were analysed on an intent-to-treat basis. The comparison of anticoagulants and acetylsalicylic acid was stopped prematurely because the combination of acetylsalicylic acid and dipyridamole was found to be more effective than acetylsalicylic acid alone. The mean duration of follow-up was 4.6 years (SD: 2.2). The mean INR was 2.57 (SD: 0.86; nearly 70% of the time within target range). The primary endpoint occurred in 99 patients (19%) in the anticoagulation group and 98 patients (18%) in the acetylsalicylic acid group (hazard ratio: 1.02; 95% CI: 0.77-1.35). The hazard ratio was 0.73 (95% CI: 0.52-1.01) for ischaemic events and 2.56 (95% CI: 1.48-4.43) for major bleeding complications. The hazard ratio for the primary outcome event comparing anticoagulants with the combination of acetylsalicylic acid and dipyridamole was 1.31 (95% CI: 0.98-1.75). Oral anticoagulants (target INR: 2.0-3.0) were not more effective than acetylsalicylic acid in the secondary prevention of

Estimation of Species Identification Error: Implications for Raptor Migration Counts and Trend Estimation

Science.gov (United States)

J.M. Hull; A.M. Fish; J.J. Keane; S.R. Mori; B.J Sacks; A.C. Hull

2010-01-01

One of the primary assumptions associated with many wildlife and population trend studies is that target species are correctly identified. This assumption may not always be valid, particularly for species similar in appearance to co-occurring species. We examined size overlap and identification error rates among Cooper's (Accipiter cooperii...

Estimation of the yield of poplars in plantations of fast-growing species within current results

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Martin Fajman

2009-01-01

Full Text Available Current results are presented of allometric yield estimates of the poplar short rotation coppice. According to a literature review it is obvious that yield estimates, based on measurable quantities of a growing stand, depend not only on the selected tree specie or its clone, but also on the site location. The Jap-105 poplar clone (P. nigra x P. maximowiczii allometric relations were analyzed by regression methods aimed at the creation of the yield estimation methodology at a testing site in Domanínek. Altogether, the twelve polynomial dependences of particular measured quantities approved the high empirical data conformity with the tested regression model (correlation index from 0.9033 to 0.9967. Within the forward stepwise regression, factors were selected, which explain best examined estimates of the total biomass DM; i.e. d.b.h. and stem height. Furthermore, the KESTEMONT’s (1971 mo­del was verified with a satisfying conformity as well. Approving presented yield estimation methods, the presented models will be checked in a large-scale field trial.

Estimating suitable environments for invasive plant species across large landscapes: a remote sensing strategy using Landsat 7 ETM+

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Young, Kendal E.; Abbott, Laurie B.; Caldwell, Colleen A.; Schrader, T. Scott

2013-01-01

The key to reducing ecological and economic damage caused by invasive plant species is to locate and eradicate new invasions before they threaten native biodiversity and ecological processes. We used Landsat Enhanced Thematic Mapper Plus imagery to estimate suitable environments for four invasive plants in Big Bend National Park, southwest Texas, using a presence-only modeling approach. Giant reed (Arundo donax), Lehmann lovegrass (Eragrostis lehmanniana), horehound (Marrubium vulgare) and buffelgrass (Pennisteum ciliare) were selected for remote sensing spatial analyses. Multiple dates/seasons of imagery were used to account for habitat conditions within the study area and to capture phenological differences among targeted species and the surrounding landscape. Individual species models had high (0.91 to 0.99) discriminative ability to differentiate invasive plant suitable environments from random background locations. Average test area under the receiver operating characteristic curve (AUC) ranged from 0.91 to 0.99, indicating that plant predictive models exhibited high discriminative ability to differentiate suitable environments for invasive plant species from random locations. Omission rates ranged from <1.0 to 18%. We demonstrated that useful models estimating suitable environments for invasive plants may be created with <50 occurrence locations and that reliable modeling using presence-only datasets can be powerful tools for land managers.

Post-Colonization Interval Estimates Using Multi-Species Calliphoridae Larval Masses and Spatially Distinct Temperature Data Sets: A Case Study

Science.gov (United States)

Weatherbee, Courtney R.; Pechal, Jennifer L.; Stamper, Trevor; Benbow, M. Eric

2017-01-01

Common forensic entomology practice has been to collect the largest Diptera larvae from a scene and use published developmental data, with temperature data from the nearest weather station, to estimate larval development time and post-colonization intervals (PCIs). To evaluate the accuracy of PCI estimates among Calliphoridae species and spatially distinct temperature sources, larval communities and ambient air temperature were collected at replicate swine carcasses (N = 6) throughout decomposition. Expected accumulated degree hours (ADH) associated with Cochliomyia macellaria and Phormia regina third instars (presence and length) were calculated using published developmental data sets. Actual ADH ranges were calculated using temperatures recorded from multiple sources at varying distances (0.90 m–7.61 km) from the study carcasses: individual temperature loggers at each carcass, a local weather station, and a regional weather station. Third instars greatly varied in length and abundance. The expected ADH range for each species successfully encompassed the average actual ADH for each temperature source, but overall under-represented the range. For both calliphorid species, weather station data were associated with more accurate PCI estimates than temperature loggers associated with each carcass. These results provide an important step towards improving entomological evidence collection and analysis techniques, and developing forensic error rates. PMID:28375172

Post-Colonization Interval Estimates Using Multi-Species Calliphoridae Larval Masses and Spatially Distinct Temperature Data Sets: A Case Study

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Courtney R. Weatherbee

2017-04-01

Full Text Available Common forensic entomology practice has been to collect the largest Diptera larvae from a scene and use published developmental data, with temperature data from the nearest weather station, to estimate larval development time and post-colonization intervals (PCIs. To evaluate the accuracy of PCI estimates among Calliphoridae species and spatially distinct temperature sources, larval communities and ambient air temperature were collected at replicate swine carcasses (N = 6 throughout decomposition. Expected accumulated degree hours (ADH associated with Cochliomyia macellaria and Phormia regina third instars (presence and length were calculated using published developmental data sets. Actual ADH ranges were calculated using temperatures recorded from multiple sources at varying distances (0.90 m–7.61 km from the study carcasses: individual temperature loggers at each carcass, a local weather station, and a regional weather station. Third instars greatly varied in length and abundance. The expected ADH range for each species successfully encompassed the average actual ADH for each temperature source, but overall under-represented the range. For both calliphorid species, weather station data were associated with more accurate PCI estimates than temperature loggers associated with each carcass. These results provide an important step towards improving entomological evidence collection and analysis techniques, and developing forensic error rates.

Estimating the footprint of pollution on coral reefs with models of species turnover.

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Brown, Christopher J; Hamilton, Richard J

2018-01-15

Ecological communities typically change along gradients of human impact, although it is difficult to estimate the footprint of impacts for diffuse threats such as pollution. We developed a joint model (i.e., one that includes multiple species and their interactions with each other and environmental covariates) of benthic habitats on lagoonal coral reefs and used it to infer change in benthic composition along a gradient of distance from logging operations. The model estimated both changes in abundances of benthic groups and their compositional turnover, a type of beta diversity. We used the model to predict the footprint of turbidity impacts from past and recent logging. Benthic communities far from logging were dominated by branching corals, whereas communities close to logging had higher cover of dead coral, massive corals, and soft sediment. Recent impacts were predicted to be small relative to the extensive impacts of past logging because recent logging has occurred far from lagoonal reefs. Our model can be used more generally to estimate the footprint of human impacts on ecosystems and evaluate the benefits of conservation actions for ecosystems. © 2018 Society for Conservation Biology.

EsPRit: ethics committee proposals for Long Term Medical Data Registries in rapidly evolving research fields - a future-proof best practice approach.

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Oberbichler, S; Hackl, W O; Hörbst, A

2017-10-18

Long-term data collection is a challenging task in the domain of medical research. Many effects in medicine require long periods of time to become traceable e.g. the development of secondary malignancies based on a given radiotherapeutic treatment of the primary disease. Nevertheless, long-term studies often suffer from an initial lack of available information, thus disallowing a standardized approach for their approval by the ethics committee. This is due to several factors, such as the lack of existing case report forms or an explorative research approach in which data elements may change over time. In connection with current medical research and the ongoing digitalization in medicine, Long Term Medical Data Registries (MDR-LT) have become an important means of collecting and analyzing study data. As with any clinical study, ethical aspects must be taken into account when setting up such registries. This work addresses the problem of creating a valid, high-quality ethics committee proposal for medical registries by suggesting groups of tasks (building blocks), information sources and appropriate methods for collecting and analyzing the information, as well as a process model to compile an ethics committee proposal (EsPRit). To derive the building blocks and associated methods software and requirements engineering approaches were utilized. Furthermore, a process-oriented approach was chosen, as information required in the creating process of ethics committee proposals remain unknown in the beginning of planning an MDR-LT. Here, we derived the needed steps from medical product certification. This was done as the medical product certification itself also communicates a process-oriented approach rather than merely focusing on content. A proposal was created for validation and inspection of applicability by using the proposed building blocks. The proposed best practice was tested and refined within SEMPER (Secondary Malignoma - Prospective Evaluation of the

Mixed-species allometric equations and estimation of aboveground biomass and carbon stocks in restoring degraded landscape in northern Ethiopia

Science.gov (United States)

Mokria, Mulugeta; Mekuria, Wolde; Gebrekirstos, Aster; Aynekulu, Ermias; Belay, Beyene; Gashaw, Tadesse; Bräuning, Achim

2018-02-01

Accurate biomass estimation is critical to quantify the changes in biomass and carbon stocks following the restoration of degraded landscapes. However, there is lack of site-specific allometric equations for the estimation of aboveground biomass (AGB), which consequently limits our understanding of the contributions of restoration efforts in mitigating climate change. This study was conducted in northwestern Ethiopia to develop a multi-species allometric equation and investigate the spatial and temporal variation of C-stocks following the restoration of degraded landscapes. We harvested and weighed 84 trees from eleven dominant species from six grazing exclosures and adjacent communal grazing land. We observed that AGB correlates significantly with diameter at stump height D 30 (R 2 = 0.78 P < 0.01), and tree height H (R 2 = 0.41, P < 0.05). Our best model, which includes D 30 and H as predictors explained 82% of the variations in AGB. This model produced the lowest bias with narrow ranges of errors across different diameter classes. Estimated C-stock showed a significant positive correlation with stem density (R 2 = 0.80, P < 0.01) and basal area (R 2 = 0.84, P < 0.01). At the watershed level, the mean C-stock was 3.8 (±0.5) Mg C ha-1. Plot-level C-stocks varied between 0.1 and 13.7 Mg C ha-1. Estimated C-stocks in three- and seven-year-old exclosures exceeded estimated C-stock in the communal grazing land by 50%. The species that contribute most to C-stocks were Leucaena sp. (28%), Calpurnia aurea (21%), Euclea racemosa (20.9%), and Dodonaea angustifolia (15.8%). The equations developed in this study allow monitoring changes in C-stocks and C-sequestration following the implementation of restoration practices in northern Ethiopia over space and time. The estimated C-stocks can be used as a reference against which future changes in C-stocks can be compared.

Capture-recapture abundance and survival estimates of three cetacean species in Icelandic coastal waters using trained scientist-volunteers

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Bertulli, Chiara G.; Guéry, Loreleï; McGinty, Niall; Suzuki, Ailie; Brannan, Naomi; Marques, Tania; Rasmussen, Marianne H.; Gimenez, Olivier

2018-01-01

Knowledge of abundance and survival of humpback whales, white-beaked dolphins and minke whales are essential to manage and conserve these species in Icelandic coastal shelf waters. Our main goal was to test the feasibility of employing inexpensive research methods (data collected by trained-scientist volunteers onboard opportunistic vessels) to assess abundance and apparent survival. No previous studies in Iceland have investigated these two demographic parameters in these three cetacean species using open capture-recapture models accounting for imperfect and possibly heterogeneous detection. A transient effect was accounted for whenever required to estimate the population of resident individuals. Identification photographs were collected by scientist-trained volunteers for 7 years (2006-2013) from onboard commercial whale-watching vessels in the coastal waters of Faxaflói (southwest coast, 4400 km2) and Skjálfandi (northeast coast, 1100 km2), Iceland. We estimated an average abundance of 83 humpback whales (Mn; 95% confidence interval: 54-130) in Skjálfandi; 238 white-beaked dolphins (La; [163-321]) in Faxaflói; and 67 minke whales (Ba; [53-82]) in Faxaflói and 24 (14-31) in Skjálfandi. We also found that apparent survival was constant for all three species (Mn: 0.52 [0.41-0.63], La: 0.79 [0.64-0.88], Ba-Faxaflói: 0.80 [0.67-0.88], Ba-Skjálfandi: 0.96 [0.60-0.99]). Our results showed inter-annual variation in abundance estimates which were small for all species, and the presence of transience for minke whales. A significant increase in abundance during the study period was solely found in minke whale data from Skjálfandi. Humpback whales and white-beaked dolphins showed lower apparent survival rates compared to similar baleen whale and dolphin populations. Our results show data collected by trained-scientist volunteers can produce viable estimates of abundance and survival although bias in the methods we employed exist and need to be addressed. With the

Using species distribution model to estimate the wintering population size of the endangered scaly-sided merganser in China.

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Qing Zeng

Full Text Available Scaly-sided Merganser is a globally endangered species restricted to eastern Asia. Estimating its population is difficult and considerable gap exists between populations at its breeding grounds and wintering sites. In this study, we built a species distribution model (SDM using Maxent with presence-only data to predict the potential wintering habitat for Scaly-sided Merganser in China. Area under the receiver operating characteristic curve (AUC method suggests high predictive power of the model (training and testing AUC were 0.97 and 0.96 respectively. The most significant environmental variables included annual mean temperature, mean temperature of coldest quarter, minimum temperature of coldest month and precipitation of driest quarter. Suitable conditions for Scaly-sided Merganser are predicted in the middle and lower reaches of the Yangtze River, especially in Jiangxi, Hunan and Hubei Provinces. The predicted suitable habitat embraces 6,984 km of river. Based on survey results from three consecutive winters (2010-2012 and previous studies, we estimated that the entire wintering population of Scaly-sided Merganser in China to be 3,561 ± 478 individuals, which is consistent with estimate in its breeding ground.

Aerial Survey as a Tool to Estimate Abundance and Describe Distribution of a Carcharhinid Species, the Lemon Shark, Negaprion brevirostris

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S. T. Kessel

2013-01-01

Full Text Available Aerial survey provides an important tool to assess the abundance of both terrestrial and marine vertebrates. To date, limited work has tested the effectiveness of this technique to estimate the abundance of smaller shark species. In Bimini, Bahamas, the lemon shark (Negaprion brevirostris shows high site fidelity to a shallow sandy lagoon, providing an ideal test species to determine the effectiveness of localised aerial survey techniques for a Carcharhinid species in shallow subtropical waters. Between September 2007 and September 2008, visual surveys were conducted from light aircraft following defined transects ranging in length between 8.8 and 4.4 km. Count results were corrected for “availability”, “perception”, and “survey intensity” to provide unbiased abundance estimates. The abundance of lemon sharks was greatest in the central area of the lagoon during high tide, with a change in abundance distribution to the east and western regions of the lagoon with low tide. Mean abundance of sharks was estimated at 49 (±8.6 individuals, and monthly abundance was significantly positively correlated with mean water temperature. The successful implementation of the aerial survey technique highlighted the potential of further employment for shark abundance assessments in shallow coastal marine environments.

Effect of glycoprotein IIb/IIIa receptor inhibition on angiographic complications during percutaneous coronary intervention in the ESPRIT trial.

Science.gov (United States)

Blankenship, J C; Tasissa, G; O'Shea, J C; Iliadis, E A; Bachour, F A; Cohen, D J; Lui, H K; Mann, T; Cohen, E; Tcheng, J E

2001-09-01

We sought to determine whether eptifibatide decreases the incidence of in-laboratory angiographic complications and to determine the relationship of angiographically evident complications to elevations of creatine kinase-MB (CK-MB) enzyme levels during percutaneous coronary intervention. In the Enhanced Suppression of the Platelet IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial, eptifibatide during coronary intervention was associated with decreased ischemic complications at 48 h and 30 days. Patients (n = 2,064) were randomized to placebo versus eptifibatide (two 180 microg/kg boluses 10 min apart and as a continuous infusion of 2 microg/kg per min) during percutaneous coronary stenting. Angiographic complications including major dissection, distal embolization, residual thrombus, abrupt closure, residual stenosis >50% and side-branch occlusion were prospectively recorded by the operator. Creatine kinase-MB levels were measured after the procedure and every 6 h thereafter. The incidence of angiographic complications and CK-MB elevation was determined for eptifibatide versus placebo groups. Eptifibatide-treated patients demonstrated nonsignificant trends toward fewer angiographic complications (10 vs. 12% for placebo patients, p = 0.13) and, for patients with angiographic complications, fewer subsequent CK-MB elevations (43 vs. 50% for placebo patients, p = 0.31). In patients without any angiographic complications, the incidence of CK-MB elevation >3 times the normal was 7% with placebo and 4% with eptifibatide (p = 0.003). Eptifibatide during nonurgent coronary stent intervention only minimally (and insignificantly) reduces the incidence of angiographic complications and subsequent CK-MB elevations in patients developing an angiographic complication. The greater effect is to reduce myocardial infarction in patients undergoing otherwise uneventful coronary stent implantation as well as in the overall study population.

Risk factors for late-onset generalized anxiety disorder: results from a 12-year prospective cohort (the ESPRIT study).

Science.gov (United States)

Zhang, X; Norton, J; Carrière, I; Ritchie, K; Chaudieu, I; Ancelin, M-L

2015-03-31

Generalized anxiety disorder (GAD) is a chronic and highly prevalent disorder associated with increased disability and mortality in the elderly. Treatment is difficult with low rate of full remission, thus highlighting the need to identify early predictors for prevention in elderly people. The aim of this study is to identify and characterize incident GAD predictors in elderly people. A total of 1711 individuals aged 65 years and above and free of GAD at baseline were randomly recruited from electoral rolls between 1999 and 2001 (the prospective ESPRIT study). The participants were examined at baseline and five times over 12 years. GAD and psychiatric comorbidity were diagnosed with a standardized psychiatric examination, the Mini-International Neuropsychiatry Interview on the basis of DSM-IV (Diagnostic and Statistical Manual of Mental Disorders, fourth edition) criteria and validated by a clinical panel. During the follow-up, 8.4% (95% confidence interval=7.1-9.7%) of the participants experienced incident GAD, 80% being first episodes; the incident rate being 10 per 1000 person-years. The principal predictors of late-onset incident GAD over 12 years derived from a multivariate Cox model were being female, recent adverse life events, having chronic physical (respiratory disorders, arrhythmia and heart failure, dyslipidemia, cognitive impairment) and mental (depression, phobia and past GAD) health disorders. Poverty, parental loss or separation and low affective support during childhood, as well as history of mental problems in parents were also significantly and independently associated with incident GAD. GAD appears as a multifactorial stress-related affective disorder resulting from both proximal and distal risk factors, some of them being potentially modifiable by health care intervention.

Tree-growth analyses to estimate tree species' drought tolerance.

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Eilmann, Britta; Rigling, Andreas

2012-02-01

Climate change is challenging forestry management and practices. Among other things, tree species with the ability to cope with more extreme climate conditions have to be identified. However, while environmental factors may severely limit tree growth or even cause tree death, assessing a tree species' potential for surviving future aggravated environmental conditions is rather demanding. The aim of this study was to find a tree-ring-based method suitable for identifying very drought-tolerant species, particularly potential substitute species for Scots pine (Pinus sylvestris L.) in Valais. In this inner-Alpine valley, Scots pine used to be the dominating species for dry forests, but today it suffers from high drought-induced mortality. We investigate the growth response of two native tree species, Scots pine and European larch (Larix decidua Mill.), and two non-native species, black pine (Pinus nigra Arnold) and Douglas fir (Pseudotsuga menziesii Mirb. var. menziesii), to drought. This involved analysing how the radial increment of these species responded to increasing water shortage (abandonment of irrigation) and to increasingly frequent drought years. Black pine and Douglas fir are able to cope with drought better than Scots pine and larch, as they show relatively high radial growth even after irrigation has been stopped and a plastic growth response to drought years. European larch does not seem to be able to cope with these dry conditions as it lacks the ability to recover from drought years. The analysis of trees' short-term response to extreme climate events seems to be the most promising and suitable method for detecting how tolerant a tree species is towards drought. However, combining all the methods used in this study provides a complete picture of how water shortage could limit species.

An estimate of the number of tropical tree species

DEFF Research Database (Denmark)

Slik, J. W Ferry; Arroyo-Rodríguez, Víctor; Aiba, Shin Ichiro

2015-01-01

The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, ...

Estimating suitable environments for invasive plant species across large landscapes: A remote sensing strategy using Landsat 7 ETM+

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The key to reducing ecological and economic damage caused by invasive plant species is to locate and eradicate new invasions before they threaten native biodiversity and ecological processes. We used Landsat Enhanced Thematic Mapper Plus imagery to estimate suitable environments for four invasive pl...

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.

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Jemma L Geoghegan

2017-02-01

Full Text Available The cross-species transmission of viruses from one host species to another is responsible for the majority of emerging infections. However, it is unclear whether some virus families have a greater propensity to jump host species than others. If related viruses have an evolutionary history of co-divergence with their hosts there should be evidence of topological similarities between the virus and host phylogenetic trees, whereas host jumping generates incongruent tree topologies. By analyzing co-phylogenetic processes in 19 virus families and their eukaryotic hosts we provide a quantitative and comparative estimate of the relative frequency of virus-host co-divergence versus cross-species transmission among virus families. Notably, our analysis reveals that cross-species transmission is a near universal feature of the viruses analyzed here, with virus-host co-divergence occurring less frequently and always on a subset of viruses. Despite the overall high topological incongruence among virus and host phylogenies, the Hepadnaviridae, Polyomaviridae, Poxviridae, Papillomaviridae and Adenoviridae, all of which possess double-stranded DNA genomes, exhibited more frequent co-divergence than the other virus families studied here. At the other extreme, the virus and host trees for all the RNA viruses studied here, particularly the Rhabdoviridae and the Picornaviridae, displayed high levels of topological incongruence, indicative of frequent host switching. Overall, we show that cross-species transmission plays a major role in virus evolution, with all the virus families studied here having the potential to jump host species, and that increased sampling will likely reveal more instances of host jumping.

A statistical model for estimation of fish density including correlation in size, space, time and between species from research survey data.

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J Rasmus Nielsen

Full Text Available Trawl survey data with high spatial and seasonal coverage were analysed using a variant of the Log Gaussian Cox Process (LGCP statistical model to estimate unbiased relative fish densities. The model estimates correlations between observations according to time, space, and fish size and includes zero observations and over-dispersion. The model utilises the fact the correlation between numbers of fish caught increases when the distance in space and time between the fish decreases, and the correlation between size groups in a haul increases when the difference in size decreases. Here the model is extended in two ways. Instead of assuming a natural scale size correlation, the model is further developed to allow for a transformed length scale. Furthermore, in the present application, the spatial- and size-dependent correlation between species was included. For cod (Gadus morhua and whiting (Merlangius merlangus, a common structured size correlation was fitted, and a separable structure between the time and space-size correlation was found for each species, whereas more complex structures were required to describe the correlation between species (and space-size. The within-species time correlation is strong, whereas the correlations between the species are weaker over time but strong within the year.

Estimating tree bole volume using artificial neural network models for four species in Turkey.

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Ozçelik, Ramazan; Diamantopoulou, Maria J; Brooks, John R; Wiant, Harry V

2010-01-01

Tree bole volumes of 89 Scots pine (Pinus sylvestris L.), 96 Brutian pine (Pinus brutia Ten.), 107 Cilicica fir (Abies cilicica Carr.) and 67 Cedar of Lebanon (Cedrus libani A. Rich.) trees were estimated using Artificial Neural Network (ANN) models. Neural networks offer a number of advantages including the ability to implicitly detect complex nonlinear relationships between input and output variables, which is very helpful in tree volume modeling. Two different neural network architectures were used and produced the Back propagation (BPANN) and the Cascade Correlation (CCANN) Artificial Neural Network models. In addition, tree bole volume estimates were compared to other established tree bole volume estimation techniques including the centroid method, taper equations, and existing standard volume tables. An overview of the features of ANNs and traditional methods is presented and the advantages and limitations of each one of them are discussed. For validation purposes, actual volumes were determined by aggregating the volumes of measured short sections (average 1 meter) of the tree bole using Smalian's formula. The results reported in this research suggest that the selected cascade correlation artificial neural network (CCANN) models are reliable for estimating the tree bole volume of the four examined tree species since they gave unbiased results and were superior to almost all methods in terms of error (%) expressed as the mean of the percentage errors. 2009 Elsevier Ltd. All rights reserved.

Historical Population Estimates For Several Fish Species At Offshore Oil and Gas Structures in the US Gulf of Mexico

Science.gov (United States)

Gitschlag, G.

2016-02-01

Population estimates were calculated for four fish species occurring at offshore oil and gas structures in water depths of 14-32 m off the Louisiana and upper Texas coasts in the US Gulf of Mexico. From 1993-1999 sampling was conducted at eight offshore platforms in conjunction with explosive salvage of the structures. To estimate fish population size prior to detonation of explosives, a fish mark-recapture study was conducted. Fish were captured on rod and reel using assorted hook sizes. Traps were occasionally used to supplement catches. Fish were tagged below the dorsal fin with plastic t-bar tags using tagging guns. Only fish that were alive and in good condition were released. Recapture sampling was conducted after explosives were detonated during salvage operations. Personnel operating from inflatable boats used dip nets to collect all dead fish that floated to the surface. Divers collected representative samples of dead fish that sank to the sea floor. Data provided estimates for red snapper (Lutjanus campechanus), Atlantic spadefish (Chaetodipterus faber), gray triggerfish (Balistes capriscus), and blue runner (Caranx crysos) at one or more of the eight platforms studied. At seven platforms, population size for red snapper was calculated at 503-1,943 with a 95% CI of 478. Abundance estimates for Atlantic spadefish at three platforms ranged from 1,432-1,782 with a 95% CI of 473. At three platforms, population size of gray triggerfish was 63-129 with a 95% CI of 82. Blue runner abundance at one platform was 558. Unlike the other three species which occur close to the platforms, blue runner range widely and recapture of this species was dependent on fish schools being in close proximity to the platform at the time explosives were detonated. Tag recapture was as high as 73% for red snapper at one structure studied.

Better Fire Emissions Estimates for Tricky Species Illustrated with a Simple Empirical Burn-to-Sample Plume Mode

Science.gov (United States)

Chatfield, R. B.; Andreae, M. O.; Lareau, N.

2017-12-01

Methodologies for estimating emission factors (EFs) and broader emission relationship (ERs) (for e.g., O3 production or aerosol absorption) have been difficult to make accurate and convincing; this is largely due to non-fire effects on both CO2 and also fire-emitted trace species. We present a new view of these multiple effects as they affect downwind tracer samples observed by aircraft in NASA's ARCTAS and SEAC4RS airborne missions. This view leads to our method for estimates of ERs and EFs that allow spatially detailed views focusing on individual samples, a Mixed Effects Emission Ratio Technique (MERET). We concentrate on presenting a generalized viewpoint: a simple idealized model of a fire plume entraining air from near-flames upward and then outward to a sampling point, a view base on observations of typical situations. Actual evolution of a plume can depend intricately on the fully history of entrainment, entraining concentration levels of CO2 and tracer species, and mixing. Observations suggest that our simple plume model with just two (analyzed) values for entrained CO2 and one or potentially two values for environmental concentrations for each tracer can serve surprisingly well for mixed-effects regression estimates. Such details appears imperative for long-lived gases like CH4, CO, and N2O. In particular, it is difficult to distinguish fire-sourced emissions from air entrained near the flames, entrained in a way proportional to fire intensity. These entraining concentrations may vary significantly from those later in plume evolution. In addition, such detail also highlights behavior of emissions that react on the path to sampling, e.g. fire-sourced or entrained urban NOx. Some caveats regarding poor sampling situations, and some warning signs, based on this empirical plume description and on MERET analyses, are demonstrated. Some information is available when multiple tracers are analyzed. MERET estimates for ERs of short and these long-lived species are

Five-year analysis from the ESPRIT 10-year postmarketing surveillance registry of adalimumab treatment for moderate to severe psoriasis.

Science.gov (United States)

Menter, Alan; Thaçi, Diamant; Papp, Kim A; Wu, Jashin J; Bereswill, Mareike; Teixeira, Henrique D; Rubant, Simone; Williams, David A

2015-09-01

ESPRIT is an ongoing, 10-year, observational registry, evaluating long-term safety and effectiveness of adalimumab treatment in routine clinical practice for patients with moderate to severe, chronic plaque psoriasis. Initial 5-year results are reported. Two populations were analyzed: the "all-treated" population received 1 or more adalimumab doses in registry, continuing adalimumab treatment from a current prescription or previous study participation, and included the "new-prescription" population initiating adalimumab 4 weeks or earlier preregistry entry. Data were collected from September 26, 2008, through November 30, 2013, for all-treated (n = 6059), which included new-prescription (n = 2580, 42.6%); median registry exposure was 765 and 677 days, respectively. In all-treated, rate (events per 100 patient-years of total adalimumab exposure [E/100PY]) of serious treatment-emergent adverse events (inside or outside of the registry) was 4.3 E/100PY, serious infection 1.0 E/100PY, malignancies 0.9 E/100PY (nonmelanoma skin cancers 0.6 E/100PY; melanomas <0.1 E/100PY). Standardized mortality ratio was 0.30 (95% confidence interval 0.19-0.44). Physician Global Assessment clear or minimal (effectiveness parameter) was achieved by 57.0% at 12 months and 64.7% at 60 months of treatment. Observational data are subject to outcome-reporting bias. No new safety signals were observed with adalimumab treatment during this initial 5-year registry review. Observed number of deaths was below expected. As-observed effectiveness remained stable through 60 months. Copyright © 2015 American Academy of Dermatology, Inc. Published by Elsevier Inc. All rights reserved.

Two-species occupancy modeling accounting for species misidentification and nondetection

Science.gov (United States)

Chambert, Thierry; Grant, Evan H. Campbell; Miller, David A. W.; Nichols, James; Mulder, Kevin P.; Brand, Adrianne B,

2018-01-01

1. In occupancy studies, species misidentification can lead to false positive detections, which can cause severe estimator biases. Currently, all models that account for false positive errors only consider omnibus sources of false detections and are limited to single species occupancy. 2. However, false detections for a given species often occur because of the misidentification with another, closely-related species. To exploit this explicit source of false positive detection error, we develop a two-species occupancy model that accounts for misidentifications between two species of interest. As with other false positive models, identifiability is greatly improved by the availability of unambiguous detections at a subset of site-occasions. Here, we consider the case where some of the field observations can be confirmed using laboratory or other independent identification methods (“confirmatory data”). 3. We performed three simulation studies to (1) assess the model’s performance under various realistic scenarios, (2) investigate the influence of the proportion of confirmatory data on estimator accuracy, and (3) compare the performance of this two-species model with that of the single-species false positive model. The model shows good performance under all scenarios, even when only small proportions of detections are confirmed (e.g., 5%). It also clearly outperforms the single-species model.

Framework for Optimizing Selection of Interspecies Correlation Estimation Models to Address Species Diversity and Toxicity Gaps in an Aquatic Database

Science.gov (United States)

The Chemical Aquatic Fate and Effects (CAFE) database is a tool that facilitates assessments of accidental chemical releases into aquatic environments. CAFE contains aquatic toxicity data used in the development of species sensitivity distributions (SSDs) and the estimation of ha...

Multipurpose uses of forage species, estimation of availability and ...

African Journals Online (AJOL)

The percentage crude fibre content of Icancina trichantha (73. 8%) was highest compared with the other browse species. Browse species from Edemani community gave significantly (P < 0.05) higher crude fibre contents than those from Obukpa community. Elaeis guineensis had significantly (P < 0.05) the highest ash ...

Fate modeling of mercury species and fluxes estimation in an urban river

International Nuclear Information System (INIS)

Tong, Yindong; Zhang, Wei; Chen, Cen; Chen, Long; Wang, Wentao; Hu, Xindi; Wang, Huanhuan; Hu, Dan; Ou, Langbo; Wang, Xuejun; Wang, Qiguang

2014-01-01

The fate and transfer of mercury in urban river is an important environmental concern. In this study, QWASI (Quantitative Water–Air–Sediment Interaction) model was selected to estimate the levels of total mercury and three mercury species in water and sediment, and was used to quantify the fluxes of mercury at water/air and sediment/water interfaces of an urban river. The predicted mercury levels in water and sediments were closed to the measured values. Water inflow, re-suspension of sediment and diffusion from sediment to water are major input sources of mercury in water. The net mercury transfer flux from water to air was 0.16 ng/(m 2 h). At the sediment/water interface, a net total mercury transfer of 1.32 ng/(m 2 h) from water to sediment was seen. In addition to the existing dynamic flux chambers measurement, this model method could provide a new perspective to identify the distribution and transfer of mercury in the urban river. -- Highlights: • QWASI could be a good tool to quantify transfer and fate of mercury in environment. • Distribution and flux of mercury species in an urban river was modeled. • Mercury in water mainly came from water inflow, sediment re-suspension and diffusion. • Net mercury transfer from water to air and sediment were 0.16 and 1.32 ng/(m 2 h). -- Quantitative Water–Air–Sediment Interaction model was used to quantify the transfer and fate of mercury in an urban river

Species coextinctions and the biodiversity crisis.

Science.gov (United States)

Koh, Lian Pin; Dunn, Robert R; Sodhi, Navjot S; Colwell, Robert K; Proctor, Heather C; Smith, Vincent S

2004-09-10

To assess the coextinction of species (the loss of a species upon the loss of another), we present a probabilistic model, scaled with empirical data. The model examines the relationship between coextinction levels (proportion of species extinct) of affiliates and their hosts across a wide range of coevolved interspecific systems: pollinating Ficus wasps and Ficus, parasites and their hosts, butterflies and their larval host plants, and ant butterflies and their host ants. Applying a nomographic method based on mean host specificity (number of host species per affiliate species), we estimate that 6300 affiliate species are "coendangered" with host species currently listed as endangered. Current extinction estimates need to be recalibrated by taking species coextinctions into account.

Oviposition preferences of two forensically important blow fly species, Chrysomya megacephala and C. rufifacies (Diptera: Calliphoridae), and implications for postmortem interval estimation.

Science.gov (United States)

Yang, Shih-Tsai; Shiao, Shiuh-Feng

2012-03-01

Necrophagous blow fly species (Diptera: Calliphoridae) are the most important agents for estimating the postmortem interval (PMI) in forensic entomology. Nevertheless, the oviposition preferences of blow flies may cause a bias of PMI estimations because of a delay or acceleration of egg laying. Chrysomya megacephala (F.) and C. rufifacies (Macquart) are two predominant necrophagous blow fly species in Taiwan. Their larvae undergo rather intense competition, and the latter one can prey on the former under natural conditions. To understand the oviposition preferences of these two species, a dual-choice device was used to test the choice of oviposition sites by females. Results showed when pork liver with and without larvae of C. rufifacies was provided, C. megacephala preferred to lay eggs on the liver without larvae. However, C. megacephala showed no preference when pork liver with and without conspecific larvae or larvae of Hemipyrellia ligurriens (Wiedemann) was provided. These results indicate that females of C. megacephala try to avoid laying eggs around larvae of facultatively predaceous species of C. rufifacies. However, C. rufifacies showed significant oviposition preference for pork liver with larvae of C. megacephala or conspecific ones when compared with pork liver with no larvae. These results probably imply that conspecific larvae or larvae of C. megacephala may potentially be alternative food resources for C. rufifacies, so that its females prefer to lay eggs in their presence. When considering the size of the oviposition media, pork livers of a relatively small size were obviously unfavorable to both species. This may be because females need to find sufficient resources to meet the food demands of their larvae. In another experiment, neither blow fly species showed an oviposition preference for pork livers of different stages of decay. In addition, the oviposition preferences of both species to those media with larvae were greatly disturbed in a dark

Climate reconstruction analysis using coexistence likelihood estimation (CRACLE): a method for the estimation of climate using vegetation.

Science.gov (United States)

Harbert, Robert S; Nixon, Kevin C

2015-08-01

• Plant distributions have long been understood to be correlated with the environmental conditions to which species are adapted. Climate is one of the major components driving species distributions. Therefore, it is expected that the plants coexisting in a community are reflective of the local environment, particularly climate.• Presented here is a method for the estimation of climate from local plant species coexistence data. The method, Climate Reconstruction Analysis using Coexistence Likelihood Estimation (CRACLE), is a likelihood-based method that employs specimen collection data at a global scale for the inference of species climate tolerance. CRACLE calculates the maximum joint likelihood of coexistence given individual species climate tolerance characterization to estimate the expected climate.• Plant distribution data for more than 4000 species were used to show that this method accurately infers expected climate profiles for 165 sites with diverse climatic conditions. Estimates differ from the WorldClim global climate model by less than 1.5°C on average for mean annual temperature and less than ∼250 mm for mean annual precipitation. This is a significant improvement upon other plant-based climate-proxy methods.• CRACLE validates long hypothesized interactions between climate and local associations of plant species. Furthermore, CRACLE successfully estimates climate that is consistent with the widely used WorldClim model and therefore may be applied to the quantitative estimation of paleoclimate in future studies. © 2015 Botanical Society of America, Inc.

Short-term light and leaf photosynthetic dynamics affect estimates of daily understory photosynthesis in four tree species.

Science.gov (United States)

Naumburg, Elke; Ellsworth, David S

2002-04-01

Instantaneous measurements of photosynthesis are often implicitly or explicitly scaled to longer time frames to provide an understanding of plant performance in a given environment. For plants growing in a forest understory, results from photosynthetic light response curves in conjunction with diurnal light data are frequently extrapolated to daily photosynthesis (A(day)), ignoring dynamic photosynthetic responses to light. In this study, we evaluated the importance of two factors on A(day) estimates: dynamic physiological responses to photosynthetic photon flux density (PPFD); and time-resolution of the PPFD data used for modeling. We used a dynamic photosynthesis model to investigate how these factors interact with species-specific photosynthetic traits, forest type, and sky conditions to affect the accuracy of A(day) predictions. Increasing time-averaging of PPFD significantly increased the relative overestimation of A(day) similarly for all study species because of the nonlinear response of photosynthesis to PPFD (15% with 5-min PPFD means). Depending on the light environment characteristics and species-specific dynamic responses to PPFD, understory tree A(day) can be overestimated by 6-42% for the study species by ignoring these dynamics. Although these overestimates decrease under cloudy conditions where direct sunlight and consequently understory sunfleck radiation is reduced, they are still significant. Within a species, overestimation of A(day) as a result of ignoring dynamic responses was highly dependent on daily sunfleck PPFD and the frequency and irradiance of sunflecks. Overall, large overestimates of A(day) in understory trees may cause misleading inferences concerning species growth and competition in forest understories with sunlight. We conclude that comparisons of A(day) among co-occurring understory species in deep shade will be enhanced by consideration of sunflecks by using high-resolution PPFD data and understanding the physiological

Bias correction in species distribution models: pooling survey and collection data for multiple species.

Science.gov (United States)

Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A

2015-04-01

Presence-only records may provide data on the distributions of rare species, but commonly suffer from large, unknown biases due to their typically haphazard collection schemes. Presence-absence or count data collected in systematic, planned surveys are more reliable but typically less abundant.We proposed a probabilistic model to allow for joint analysis of presence-only and survey data to exploit their complementary strengths. Our method pools presence-only and presence-absence data for many species and maximizes a joint likelihood, simultaneously estimating and adjusting for the sampling bias affecting the presence-only data. By assuming that the sampling bias is the same for all species, we can borrow strength across species to efficiently estimate the bias and improve our inference from presence-only data.We evaluate our model's performance on data for 36 eucalypt species in south-eastern Australia. We find that presence-only records exhibit a strong sampling bias towards the coast and towards Sydney, the largest city. Our data-pooling technique substantially improves the out-of-sample predictive performance of our model when the amount of available presence-absence data for a given species is scarceIf we have only presence-only data and no presence-absence data for a given species, but both types of data for several other species that suffer from the same spatial sampling bias, then our method can obtain an unbiased estimate of the first species' geographic range.

National scale biomass estimators for United States tree species

Science.gov (United States)

Jennifer C. Jenkins; David C. Chojnacky; Linda S. Heath; Richard A. Birdsey

2003-01-01

Estimates of national-scale forest carbon (C) stocks and fluxes are typically based on allometric regression equations developed using dimensional analysis techniques. However, the literature is inconsistent and incomplete with respect to large-scale forest C estimation. We compiled all available diameter-based allometric regression equations for estimating total...

[Models for biomass estimation of four shrub species planted in urban area of Xi'an city, Northwest China].

Science.gov (United States)

Yao, Zheng-Yang; Liu, Jian-Jun

2014-01-01

Four common greening shrub species (i. e. Ligustrum quihoui, Buxus bodinieri, Berberis xinganensis and Buxus megistophylla) in Xi'an City were selected to develop the highest correlation and best-fit estimation models for the organ (branch, leaf and root) and total biomass against different independent variables. The results indicated that the organ and total biomass optimal models of the four shrubs were power functional model (CAR model) except for the leaf biomass model of B. megistophylla which was logarithmic functional model (VAR model). The independent variables included basal diameter, crown diameter, crown diameter multiplied by height, canopy area and canopy volume. B. megistophylla significantly differed from the other three shrub species in the independent variable selection, which were basal diameter and crown-related factors, respectively.

Estimating photosynthesis and concurrent export rates in C3 and C4 species at ambient and elevated CO2

International Nuclear Information System (INIS)

Grodzinski, B.; Jiao, J.; Leonardos, E.D.

1998-01-01

The ability of 21 C3 and C4 monocot and dicot species to rapidly export newly fixed C in the light at both ambient and enriched CO2 levels was compared. Photosynthesis and concurrent export rates were estimated during isotopic equilibrium of the transport sugars using a steady-state 14CO2-labeling procedure. At ambient CO2 photosynthesis and export rates for C3 species were 5 to 15 and 1 to 10 micromole C m-2 s-1, respectively, and 20 to 30 and 15 to 22 micromole C m-2 s-1, respectively, for C4 species. A linear regression plot of export on photosynthesis rate of all species had a correlation coefficient of 0.87. When concurrent export was expressed as a percentage of photosynthesis, several C3 dicots that produced transport sugars other than Suc had high efflux rates relative to photosynthesis, comparable to those of C4 species. At high CO2 photosynthetic and export rates were only slightly altered in C4 species, and photosynthesis increased but export rates did not in all C3 species. The C3 species that had high efflux rates relative to photosynthesis at ambient CO2 exported at rates comparable to those of C4 species on both an absolute basis and as a percentage of photosynthesis. At ambient CO2 there were strong linear relationships between photosynthesis, sugar synthesis, and concurrent export. However, at high CO2 the relationships between photosynthesis and export rate and between sugar synthesis and export rate were not as strong because sugars and starch were accumulated

An Off-Grid Turbo Channel Estimation Algorithm for Millimeter Wave Communications

Directory of Open Access Journals (Sweden)

Lingyi Han

2016-09-01

Full Text Available The bandwidth shortage has motivated the exploration of the millimeter wave (mmWave frequency spectrum for future communication networks. To compensate for the severe propagation attenuation in the mmWave band, massive antenna arrays can be adopted at both the transmitter and receiver to provide large array gains via directional beamforming. To achieve such array gains, channel estimation (CE with high resolution and low latency is of great importance for mmWave communications. However, classic super-resolution subspace CE methods such as multiple signal classification (MUSIC and estimation of signal parameters via rotation invariant technique (ESPRIT cannot be applied here due to RF chain constraints. In this paper, an enhanced CE algorithm is developed for the off-grid problem when quantizing the angles of mmWave channel in the spatial domain where off-grid problem refers to the scenario that angles do not lie on the quantization grids with high probability, and it results in power leakage and severe reduction of the CE performance. A new model is first proposed to formulate the off-grid problem. The new model divides the continuously-distributed angle into a quantized discrete grid part, referred to as the integral grid angle, and an offset part, termed fractional off-grid angle. Accordingly, an iterative off-grid turbo CE (IOTCE algorithm is proposed to renew and upgrade the CE between the integral grid part and the fractional off-grid part under the Turbo principle. By fully exploiting the sparse structure of mmWave channels, the integral grid part is estimated by a soft-decoding based compressed sensing (CS method called improved turbo compressed channel sensing (ITCCS. It iteratively updates the soft information between the linear minimum mean square error (LMMSE estimator and the sparsity combiner. Monte Carlo simulations are presented to evaluate the performance of the proposed method, and the results show that it enhances the angle

Coalescent methods for estimating phylogenetic trees.

Science.gov (United States)

Liu, Liang; Yu, Lili; Kubatko, Laura; Pearl, Dennis K; Edwards, Scott V

2009-10-01

We review recent models to estimate phylogenetic trees under the multispecies coalescent. Although the distinction between gene trees and species trees has come to the fore of phylogenetics, only recently have methods been developed that explicitly estimate species trees. Of the several factors that can cause gene tree heterogeneity and discordance with the species tree, deep coalescence due to random genetic drift in branches of the species tree has been modeled most thoroughly. Bayesian approaches to estimating species trees utilizes two likelihood functions, one of which has been widely used in traditional phylogenetics and involves the model of nucleotide substitution, and the second of which is less familiar to phylogeneticists and involves the probability distribution of gene trees given a species tree. Other recent parametric and nonparametric methods for estimating species trees involve parsimony criteria, summary statistics, supertree and consensus methods. Species tree approaches are an appropriate goal for systematics, appear to work well in some cases where concatenation can be misleading, and suggest that sampling many independent loci will be paramount. Such methods can also be challenging to implement because of the complexity of the models and computational time. In addition, further elaboration of the simplest of coalescent models will be required to incorporate commonly known issues such as deviation from the molecular clock, gene flow and other genetic forces.

Pollution Problem in River Kabul: Accumulation Estimates of Heavy Metals in Native Fish Species.

Science.gov (United States)

Ahmad, Habib; Yousafzai, Ali Muhammad; Siraj, Muhammad; Ahmad, Rashid; Ahmad, Israr; Nadeem, Muhammad Shahid; Ahmad, Waqar; Akbar, Nazia; Muhammad, Khushi

2015-01-01

The contamination of aquatic systems with heavy metals is affecting the fish population and hence results in a decline of productivity rate. River Kabul is a transcountry river originating at Paghman province in Afghanistan and inters in Khyber Pakhtunkhwa province of Pakistan and it is the major source of irrigation and more than 54 fish species have been reported in the river. Present study aimed at the estimation of heavy metals load in the fish living in River Kabul. Heavy metals including chromium, nickel, copper, zinc, cadmium, and lead were determined through atomic absorption spectrophotometer after tissue digestion by adopting standard procedures. Concentrations of these metals were recorded in muscles and liver of five native fish species, namely, Wallago attu, Aorichthys seenghala, Cyprinus carpio, Labeo dyocheilus, and Ompok bimaculatus. The concentrations of chromium, nickel, copper, zinc, and lead were higher in both of the tissues, whereas the concentration of cadmium was comparatively low. However, the concentration of metals was exceeding the RDA (Recommended Dietary Allowance of USA) limits. Hence, continuous fish consumption may create health problems for the consumers. The results of the present study are alarming and suggest implementing environmental laws and initiation of a biomonitoring program of the river.

[Estimation of VOC emission from forests in China based on the volume of tree species].

Science.gov (United States)

Zhang, Gang-feng; Xie, Shao-dong

2009-10-15

Applying the volume data of dominant trees from statistics on the national forest resources, volatile organic compounds (VOC) emissions of each main tree species in China were estimated based on the light-temperature model put forward by Guenther. China's VOC emission inventory for forest was established, and the space-time and age-class distributions of VOC emission were analyzed. The results show that the total VOC emissions from forests in China are 8565.76 Gg, of which isoprene is 5689.38 Gg (66.42%), monoterpenes is 1343.95 Gg (15.69%), and other VOC is 1532.43 Gg (17.89%). VOC emissions have significant species variation. Quercus is the main species responsible for emission, contributing 45.22% of the total, followed by Picea and Pinus massoniana with 6.34% and 5.22%, respectively. Southwest and Northeast China are the major emission regions. In specific, Yunnan, Sichuan, Heilongjiang, Jilin and Shaanxi are the top five provinces producing the most VOC emissions from forests, and their contributions to the total are 15.09%, 12.58%, 10.35%, 7.49% and 7.37%, respectively. Emissions from these five provinces occupy more than half (52.88%) of the national emissions. Besides, VOC emissions show remarkable seasonal variation. Emissions in summer are the largest, accounting for 56.66% of the annual. Forests of different ages have different emission contribution. Half-mature forests play a key role and contribute 38.84% of the total emission from forests.

Predictors of bacterial pneumonia in the Evaluation of Subcutaneous Interleukin-2 in a Randomized International Trial (ESPRIT)

Science.gov (United States)

Pett, SL; Carey, C; Lin, E; Wentworth, D; Lazovski, J; Miró, JM; Gordin, F; Angus, B; Rodriguez-Barradas, M; Rubio, R; Tambussi, G; Cooper, DA; Emery, S

2010-01-01

Background and Objectives Bacterial pneumonia still contributes to morbidity/mortality in HIV-infection despite effective combination antiretroviral therapy (cART). ESPRIT, a trial of intermittent recombinant interleukin-2 (rIL-2) with cART vs.cART alone (control arm) in HIV-infected adults with CD4+≥300 offered the opportunity to explore associations between bacterial pneumonia and rIL-2, a cytokine which increases some bacterial infections. Methods Baseline and time-updated factors associated with first-episode pneumonia on study were analysed using multivariate proportional hazards regression models. Smoking/pneumococcal vaccination history was not collected. Results IL-2 cycling was most intense in years 1-2. Over ≈7 years, 93 IL-2 (rate 0.67/100PY) and 86 control (rate 0.63/100PY) patients experienced a pneumonia-event, (HR=1.06,95%CI=0.79,1.42,p=0.68). Median CD4+ prior to pneumonia was 570 (IL-2 arm) and 463cells/uL (control arm). Baseline risks for bacterial pneumonia included older age, IVDU, detectable HIV viral load (VL), previous recurrent pneumonia; Asian ethnicity was associated with decreased risk. Higher proximal VL (HR for 1 log10 higher VL=1.28,95%CI=1.11,1.47,p=<.001) was associated with increased risk; higher CD4+ prior to the event (HR per 100 cells higher=0.94,95%CI0.89,1.0,p=0.04) decreased risk. Compared to controls, the hazard for a pneumonia-event was higher if rIL-2 was received <180 days prior (HR=1.66,95%CI=1.07,2.60,p=0.02) vs.≥180 days (HR=0.98,95%CI=0.70,1.37,p=0.9). Compared to the control group, pneumonia-risk in the IL-2 arm decreased over time with HRs of 1.41, 1.71, 1.16, 0.62 and 0.84 in years 1, 2, 3-4,5-6 and 7, respectively. Conclusions Bacterial pneumonia rates in cART-treated adults with moderate immunodeficiency are high. The mechanism of the association between bacterial pneumonia and recent IL-2 receipt and/or detectable HIV-viraemia deserves further exploration. PMID:20812949

Change-in-ratio density estimator for feral pigs is less biased than closed mark-recapture estimates

Science.gov (United States)

Hanson, L.B.; Grand, J.B.; Mitchell, M.S.; Jolley, D.B.; Sparklin, B.D.; Ditchkoff, S.S.

2008-01-01

Closed-population capture-mark-recapture (CMR) methods can produce biased density estimates for species with low or heterogeneous detection probabilities. In an attempt to address such biases, we developed a density-estimation method based on the change in ratio (CIR) of survival between two populations where survival, calculated using an open-population CMR model, is known to differ. We used our method to estimate density for a feral pig (Sus scrofa) population on Fort Benning, Georgia, USA. To assess its validity, we compared it to an estimate of the minimum density of pigs known to be alive and two estimates based on closed-population CMR models. Comparison of the density estimates revealed that the CIR estimator produced a density estimate with low precision that was reasonable with respect to minimum known density. By contrast, density point estimates using the closed-population CMR models were less than the minimum known density, consistent with biases created by low and heterogeneous capture probabilities for species like feral pigs that may occur in low density or are difficult to capture. Our CIR density estimator may be useful for tracking broad-scale, long-term changes in species, such as large cats, for which closed CMR models are unlikely to work. ?? CSIRO 2008.

Rationale, design and methods of the ESPRIT study: Energy, Sexual desire and body PropoRtions wIth AndroGel, Testosterone 1% gel therapy, in hypogonadal men.

Science.gov (United States)

Behre, Hermann M; Heinemann, Lothar; Morales, Alvaro; Pexman-Fieth, Claire

2008-06-01

Hypogonadism is associated with a range of disease states that have significant effects on morbidity and mortality, and also affect quality of life. The ESPRIT study (Energy, Sexual desire and body PropoRtions wIth AndroGel, Testosterone 1% gel therapy) is a 6-month, multinational, open label, observational study in hypogonadal men being treated with transdermal AndroGel in usual daily clinical practice; 1,700-2,400 patients will be enrolled in Canada, Germany, Central and Eastern Europe, Russia and the Middle East. The main objective will be to evaluate the effect of AndroGel on symptoms of hypogonadism and quality of life as assessed by the Aging Males' Symptoms scale. Further objectives include evaluating the effect and time to onset of improvement in erectile dysfunction and libido/sexual desire (International Index of Erectile Function), fatigue (Multi-dimensional Fatigue Index) and body composition (waist circumference, body mass index). Subgroup analyses will be performed: or = 50 years; absence versus presence of metabolic syndrome. The safety of AndroGel will also be assessed. The study population will consist of newly diagnosed hypogonadal men (age > or = 18 years), in whom testosterone deficiency has been confirmed by clinical features and biochemical tests according to international guidelines, who are currently being prescribed AndroGel (testosterone 1% gel, starting dose 50 mg testosterone per day).

Complementary effects of thienopyridine pretreatment and platelet glycoprotein IIb/IIIa integrin blockade with eptifibatide in coronary stent intervention; results from the ESPRIT trial.

Science.gov (United States)

Dery, Jean-Pierre; Campbell, Mark E; Mathias, Jasmine; Pieper, Karen S; Harrington, Robert A; Madan, Mina; Gibson, C Michael; Tolleson, Thaddeus R; O'Shea, J Conor; Tcheng, James E

2007-07-01

This analysis sought to investigate the complementary effect of thienopyridine pretreatment and platelet glycoprotein (GP) IIb/IIIa integrin blockade in coronary stent intervention. Definitive evidence supporting combined antiplatelet therapy consisting of thienopyridine pretreatment and GP IIb/IIIa receptor blockade in patients undergoing percutaneous coronary intervention (PCI) with stent implantation is limited. We retrospectively analyzed clinical outcomes by thienopyridine use in the 2,040 patients randomized to eptifibatide or placebo who underwent PCI in the ESPRIT trial. A total of 901 patients received a loading dose of thienopyridine before PCI (group 1), 123 received thienopyridine pretreatment without a loading dose (group 2), and 1,016 were not treated with thienopyridine before PCI (group 3). The composite incidence of death or myocardial infarction at 30 days was significantly lower in group 1 than in groups 2 and 3 combined (OR, 0.71 [95%CI, 0.52-0.99]; P = 0.0417). A similar trend was seen for the composite of death, myocardial infarction, or urgent target vessel revascularization (unadjusted OR, 0.77 [0.57-1.05]; P = 0.1025). After adjusting for baseline characteristics, these differences were no longer significant. No interactions were identified with eptifibatide assignment for any of the group comparisons. Pretreatment with a loading dose of thienopyridine lowers the rate of ischemic complications regardless of treatment with a GP IIb/IIIa inhibitor. Conversely, the efficacy of eptifibatide is maintained whether or not a loading dose of a thienopyridine is administered. Optimal outcomes are achieved in patients receiving thienopyridine pretreatment along with platelet GP IIb/IIIa inhibitor therapy. (c) 2007 Wiley-Liss, Inc.

Estimation of preferred water flow parameters for four species of ...

African Journals Online (AJOL)

Blackfly larvae typically occur in fast-flowing riffle sections of rivers, with different blackfly species showing preferences for different hydraulic conditions. Very little quantitative data exist on hydraulic conditions linked to the blackfly species occurring in South African streams. Stones-in-current biotopes (i.e. fast riffle flows over ...

Predictors of bacterial pneumonia in Evaluation of Subcutaneous Interleukin-2 in a Randomized International Trial (ESPRIT).

Science.gov (United States)

Pett, S L; Carey, C; Lin, E; Wentworth, D; Lazovski, J; Miró, J M; Gordin, F; Angus, B; Rodriguez-Barradas, M; Rubio, R; Tambussi, G; Cooper, D A; Emery, S

2011-04-01

Bacterial pneumonia still contributes to morbidity/mortality in HIV infection despite effective combination antiretroviral therapy (cART). Evaluation of Subcutaneous Interleukin-2 in a Randomized International Trial (ESPRIT), a trial of intermittent recombinant interleukin-2 (rIL-2) with cART vs. cART alone (control arm) in HIV-infected adults with CD4 counts ≥300cells/μL, offered the opportunity to explore associations between bacterial pneumonia and rIL-2, a cytokine that increases the risk of some bacterial infections. Baseline and time-updated factors associated with first-episode pneumonia on study were analysed using multivariate proportional hazards regression models. Information on smoking/pneumococcal vaccination history was not collected. IL-2 cycling was most intense in years 1-2. Over ≈7 years, 93 IL-2 [rate 0.67/100 person-years (PY)] and 86 control (rate 0.63/100 PY) patients experienced a pneumonia event [hazard ratio (HR) 1.06; 95% confidence interval (CI) 0.79, 1.42; P=0.68]. Median CD4 counts prior to pneumonia were 570cells/μL (IL-2 arm) and 463cells/μL (control arm). Baseline risks for bacterial pneumonia included older age, injecting drug use, detectable HIV viral load (VL) and previous recurrent pneumonia; Asian ethnicity was associated with decreased risk. Higher proximal VL (HR for 1 log(10) higher VL 1.28; 95% CI 1.11, 1.47; P<0.001) was associated with increased risk; higher CD4 count prior to the event (HR per 100 cells/μL higher 0.94; 95% CI 0.89, 1.0; P=0.04) decreased risk. Compared with controls, the hazard for a pneumonia event was higher if rIL-2 was received <180 days previously (HR 1.66; 95% CI 1.07, 2.60; P=0.02) vs.≥180 days previously (HR 0.98; 95% CI 0.70, 1.37; P=0.9). Compared with the control group, pneumonia risk in the IL-2 arm decreased over time, with HRs of 1.41, 1.71, 1.16, 0.62 and 0.84 in years 1, 2, 3-4, 5-6 and 7, respectively. Bacterial pneumonia rates in cART-treated adults with moderate

Estimated harvesting on jellyfish in Sarawak

Science.gov (United States)

Bujang, Noriham; Hassan, Aimi Nuraida Ali

2017-04-01

There are three species of jellyfish recorded in Sarawak which are the Lobonema smithii (white jellyfish), Rhopilema esculenta (red jellyfish) and Mastigias papua. This study focused on two particular species which are L.smithii and R.esculenta. This study was done to estimate the highest carrying capacity and the population growth rate of both species by using logistic growth model. The maximum sustainable yield for the harvesting of this species was also determined. The unknown parameters in the logistic model were estimated using center finite different method. As for the results, it was found that the carrying capacity for L.smithii and R.esculenta were 4594.9246456819 tons and 5855.9894242086 tons respectively. Whereas, the population growth rate for both L.smithii and R.esculenta were estimated at 2.1800463754 and 1.144864086 respectively. Hence, the estimated maximum sustainable yield for harvesting for L.smithii and R.esculenta were 2504.2872047638 tons and 1676.0779949431 tons per year.

Long-term safety of unopposed estrogen used by women surviving myocardial infarction: 14-year follow-up of the ESPRIT randomised controlled trial.

Science.gov (United States)

Cherry, N; McNamee, R; Heagerty, A; Kitchener, H; Hannaford, P

2014-05-01

To compare health outcomes during 14-year observational follow-up in women initially randomised to unopposed estrogen or placebo. At recruitment to the Estrogen for the Prevention of Re-Infarction Trial (ESPRIT) women were assigned to estradiol valerate: 2 mg or placebo treatment for 2 years. Women were recruited from 35 hospitals in the northwest of England and Wales in July 1996-February 2000. Women aged 50-69 surviving their first myocardial infarction. All women were followed by data linkage to UK mortality and cancer records; mean follow-up 14.1 and 12.6 years, respectively. In an intention-to-treat analysis, hazard ratios (HRs) were computed, overall and stratified by age at recruitment. Death (all-cause, cardiac disease, stroke or cancer) and cancer incidence (any, breast or endometrium). There were 418 deaths in 1017 women randomised. The all-cause mortality HR of 1.07 (95% CI 0.88-1.29) indicated no significant difference between treatment groups. Women aged 50-59 years at recruitment had lower HRs than women aged 60-69 years for all outcomes except ischaemic heart disease. Among 149 incident cancers there were seven cases of breast cancer in the intervention arm and 15 in the placebo; HR 0.47 (95% CI 0.19-1.15). There were no deaths from endometrial cancer but three incident cases, one in the active arm and two in placebo. These results suggest that unopposed estrogen may be used safely by women with an intact uterus surviving a first myocardial infarction. © 2014 Royal College of Obstetricians and Gynaecologists.

How to estimate the differential acceleration in a two-species atom interferometer to test the equivalence principle

Energy Technology Data Exchange (ETDEWEB)

Varoquaux, G; Nyman, R A; Geiger, R; Cheinet, P; Bouyer, P [Laboratoire Charles Fabry de l' Institut d' Optique, Campus Polytechnique, RD 128, 91127 Palaiseau (France); Landragin, A [LNE-SYRTE, UMR8630, UPMC, Observatoire de Paris, 61 avenue de l' Observatoire, 75014 Paris (France)], E-mail: philippe.bouyer@institutoptique.fr

2009-11-15

We propose a scheme for testing the weak equivalence principle (universality of free-fall (UFF)) using an atom-interferometric measurement of the local differential acceleration between two atomic species with a large mass ratio as test masses. An apparatus in free fall can be used to track atomic free-fall trajectories over large distances. We show how the differential acceleration can be extracted from the interferometric signal using Bayesian statistical estimation, even in the case of a large mass and laser wavelength difference. We show that this statistical estimation method does not suffer from acceleration noise of the platform and does not require repeatable experimental conditions. We specialize our discussion to a dual potassium/rubidium interferometer and extend our protocol with other atomic mixtures. Finally, we discuss the performance of the UFF test developed for the free-fall (zero-gravity) airplane in the ICE project (http://www.ice-space.fr)

How to estimate the differential acceleration in a two-species atom interferometer to test the equivalence principle

International Nuclear Information System (INIS)

Varoquaux, G; Nyman, R A; Geiger, R; Cheinet, P; Bouyer, P; Landragin, A

2009-01-01

We propose a scheme for testing the weak equivalence principle (universality of free-fall (UFF)) using an atom-interferometric measurement of the local differential acceleration between two atomic species with a large mass ratio as test masses. An apparatus in free fall can be used to track atomic free-fall trajectories over large distances. We show how the differential acceleration can be extracted from the interferometric signal using Bayesian statistical estimation, even in the case of a large mass and laser wavelength difference. We show that this statistical estimation method does not suffer from acceleration noise of the platform and does not require repeatable experimental conditions. We specialize our discussion to a dual potassium/rubidium interferometer and extend our protocol with other atomic mixtures. Finally, we discuss the performance of the UFF test developed for the free-fall (zero-gravity) airplane in the ICE project (http://www.ice-space.fr).

Homosexualité et esprit fort dans la première moitié du xviie siècle : indices poétiques d’une « invisible affinité »

Directory of Open Access Journals (Sweden)

Michèle Rosellini

2010-03-01

Full Text Available Nombre d’auteurs du xviie siècle représentatifs du libertinage ont été accusés de sodomie, au premier chef Théophile de Viau qui a été condamné au bûcher à la fois pour ce motif associé à l’athéisme. Aussi certains historiens de l’homosexualité les considèrent comme des victimes emblématiques de l’homophobie. Mais l’examen de leurs œuvres ne permet pas de conclure qu’ils expriment l’homosexualité au sens où nous l’entendons aujourd’hui. Un certain type de poésie représente, pour en faire l’apologie, des actes sodomitiques pratiqués indifféremment avec des partenaires masculins ou féminins. Leur but est la provocation morale et religieuse. Bénéficiant sans doute de la position sociale de leurs auteurs et de dispositifs de publication restreinte, ils incarnent l’esprit fort dans sa dimension transgressive. Dans un tout autre registre et dans un cadre élargi de publication, la poésie et la fiction peuvent valoriser les relations entre hommes comme un idéal de beauté et d’amour, en recourant à l’alibi de la philosophie de Platon et de la mythologie d’Ovide pour atténuer les représentations clairement sexuelles. Leurs auteurs parviennent néanmoins, par des moyens proprement poétiques et fictionnels, à donner expression au désir homosexuel. Celui-ci renforce alors la masculinité de l’esprit fort en l’associant à une fécondité intellectuelle et artistique capable de composer avec les normes de l’espace public.Some seventeenth-century libertine writers were accused of sodomy, most famously Theophile de Viau, who was condemned to be burned at the stake, for both atheism and sodomy. Some scholars of queer theory would like to present them primarily as victims of homophobia. But if we observe their works, we hardly find that they express homosexuality in its contemporary meaning and form. To adress this question of sexuality, we can distinguish two kinds of texts. Some of them

Ring species as demonstrations of the continuum of species formation

DEFF Research Database (Denmark)

Pereira, Ricardo José Do Nascimento; Wake, David B.

2015-01-01

In the mid-20th century, Ernst Mayr (1942) and Theodosius Dobzhansky (1958) championed the significance of 'circular overlaps' or 'ring species' as the perfect demonstration of the gradual nature of species formation. As an ancestral species expands its range, wrapping around a geographic barrier......? What conditions favour their formation? Modelling studies have attempted to address these knowledge gaps by estimating the biological parameters that result in stable ring species (Martins et al. 2013), and determining the necessary topographic parameters of the barriers encircled (Monahan et al. 2012......). However, any generalization is undermined by a major limitation: only a handful of ring species are known to exist in nature. In addition, many of them have been broken into multiple species presumed to be evolving independently, usually obscuring the evolutionary dynamics that generate diversity. A paper...

Risk of All-cause Mortality Associated with Non-fatal AIDS and Serious Non-AIDS Events among Adults Infected with HIV

Science.gov (United States)

NEUHAUS, Jacqueline; ANGUS, Brian; KOWALSKA, Justyna D.; LA ROSA, Alberto; SAMPSON, Jim; WENTWORTH, Deborah; MOCROFT, Amanda

2010-01-01

Objectives Among patients with HIV, the risk of death associated with different AIDS events has been quantified, but the risk of death associated with non-AIDS events has not been examined. We compared the risk of all-cause mortality following AIDS versus serious non-AIDS (SNA) events in SMART and ESPRIT. Design Data from 9,583 HIV-infected participants, 5,472 with CD4+ >350 cells/mm3 enrolled in SMART and 4,111 with CD4+ ≥300 cells/mm3 enrolled in ESPRIT were analyzed. Methods Cumulative mortality 6 months after AIDS and SNA (cardiovascular, renal, hepatic disease and malignancies) was estimated using the Kaplan-Meier method. Cox models were used to estimate hazard ratios (HRs) associated with AIDS and SNA on the risk of death overall and by treatment group within study. Results AIDS and SNA occurred in 286 and 435 participants with 47 (16%) and 115 (26%) subsequent deaths, respectively. Six-month cumulative mortality was 4.7% (95%CI:2.8–8.0) after experiencing an AIDS event and 13.4% (95%CI:10.5–17.0) after experiencing an SNA event. The adjusted HR for all-cause mortality for those who experienced AIDS versus those who did not was 4.9 (95%CI:3.6–6.8). The corresponding HR for SNA was 11.4 (95%CI:9.0–14.5) (pESPRIT. Conclusions Among HIV-infected persons with higher CD4+ counts, SNA events occur more frequently and are associated with a greater risk of death than AIDS events. Future research should be aimed at comparing strategies to reduce morbidity and mortality associated with SNA events for HIV-infected persons. PMID:20177360

Support your local species

DEFF Research Database (Denmark)

Stärk, Johanna

Nearly a quarter of all animal species within the European Union are threatened with extinction. Protecting many of these species will require the full spectrum of conservation actions from in-situ to ex-situ management. Holding an estimated 44% of EU Red Listed terrestrial vertebrates, zoos hereby...

Ohio USA stoneflies (Insecta, Plecoptera): species richness estimation, distribution of functional niche traits, drainage affiliations, and relationships to other states

Science.gov (United States)

DeWalt, R. Edward; Cao, Yong; Tweddale, Tari; Grubbs, Scott A.; Hinz, Leon; Pessino, Massimo; Robinson, Jason L.

2012-01-01

Abstract Ohio is an eastern USA state that historically was >70% covered in upland and mixed coniferous forest; about 60% of it glaciated by the Wisconsinan glacial episode. Its stonefly fauna has been studied in piecemeal fashion until now. The assemblage of Ohio stoneflies was assessed from over 4,000 records accumulated from 18 institutions, new collections, and trusted literature sources. Species richness totaled 102 with estimators Chao2 and ICE Mean predicting 105.6 and 106.4, respectively. Singletons and doubletons totaled 18 species. All North American families were represented with Perlidae accounted for the highest number of species at 34. The family Peltoperlidae contributed a single species. Most species had univoltine–fast life cycles with the vast majority emerging in summer, although there was a significant component of winter stoneflies. Nine United States Geological Survey hierarchical drainage units level 6 (HUC6) were used to stratify specimen data. Species richness was significantly related to the number of unique HUC6 locations, but there was no relationship with HUC6 drainage area. A nonparametric multidimensional scaling analysis found that larger HUC6s in the western part of the state had similar assemblages with lower species richness that were found to align with more savanna and wetland habitat. Other drainages having richer assemblages were aligned with upland deciduous and mixed coniferous forests of the east and south where slopes were higher. The Ohio assemblage was most similar to the well–studied fauna of Indiana (88 spp.) and Kentucky (108 spp.), two neighboring states. Many rare species and several high quality stream reaches should be considered for greater protection. PMID:22539876

Ohio USA stoneflies (Insecta, Plecoptera: species richness estimation, distribution of functional niche traits, drainage affiliations, and relationships to other states

Directory of Open Access Journals (Sweden)

R. DeWalt

2012-03-01

Full Text Available Ohio is an eastern USA state that historically was >70% covered in upland and mixed coniferous forest; about 60% of it glaciated by the Wisconsinan glacial episode. Its stonefly fauna has been studied in piecemeal fashion until now. The assemblage of Ohio stoneflies was assessed from over 4,000 records accumulated from 18 institutions, new collections, and trusted literature sources. Species richness totaled 102 with estimators Chao2 and ICE Mean predicting 105.6 and 106.4, respectively. Singletons and doubletons totaled 18 species. All North American families were represented with Perlidae accounted for the highest number of species at 34. The family Peltoperlidae contributed a single species. Most species had univoltine–fast life cycles with the vast majority emerging in summer, although there was a significant component of winter stoneflies. Nine United States Geological Survey hierarchical drainage units level 6 (HUC6 were used to stratify specimen data. Species richness was significantly related to the number of unique HUC6 locations, but there was no relationship with HUC6 drainage area. A nonparametric multidimensional scaling analysis found that larger HUC6s in the western part of the state had similar assemblages with lower species richness that were found to align with more savanna and wetland habitat. Other drainagesricher assemblages were aligned with upland deciduous and mixed coniferous forests of the east and south where slopes were higher. The Ohio assemblage was most similar to the well–studied fauna of Indiana (88 spp. and Kentucky (108 spp., two neighboring states. Many rare species and several high quality stream reaches should be considered for greater protection.

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

Directory of Open Access Journals (Sweden)

Davis Matthew P

2013-02-01

Full Text Available Abstract Background There has been a considerable increase in studies investigating rates of diversification and character evolution, with one of the promising techniques being the BiSSE method (binary state speciation and extinction. This study uses simulations under a variety of different sample sizes (number of tips and asymmetries of rate (speciation, extinction, character change to determine BiSSE’s ability to test hypotheses, and investigate whether the method is susceptible to confounding effects. Results We found that the power of the BiSSE method is severely affected by both sample size and high tip ratio bias (one character state dominates among observed tips. Sample size and high tip ratio bias also reduced accuracy and precision of parameter estimation, and resulted in the inability to infer which rate asymmetry caused the excess of a character state. In low tip ratio bias scenarios with appropriate tip sample size, BiSSE accurately estimated the rate asymmetry causing character state excess, avoiding the issue of confounding effects. Conclusions Based on our findings, we recommend that future studies utilizing BiSSE that have fewer than 300 terminals and/or have datasets where high tip ratio bias is observed (i.e., fewer than 10% of species are of one character state should be extremely cautious with the interpretation of hypothesis testing results.

Estimating carbon stock in secondary forests

DEFF Research Database (Denmark)

Breugel, Michiel van; Ransijn, Johannes; Craven, Dylan

2011-01-01

of trees and species for destructive biomass measurements. We assess uncertainties associated with these decisions using data from 94 secondary forest plots in central Panama and 244 harvested trees belonging to 26 locally abundant species. AGB estimates from species-specific models were used to assess...... is the use of allometric regression models to convert forest inventory data to estimates of aboveground biomass (AGB). The use of allometric models implies decisions on the selection of extant models or the development of a local model, the predictor variables included in the selected model, and the number...... relative errors of estimates from multispecies models. To reduce uncertainty in the estimation of plot AGB, including wood specific gravity (WSG) in the model was more important than the number of trees used for model fitting. However, decreasing the number of trees increased uncertainty of landscape...

Integrated analysis for population estimation, management impact evaluation, and decision-making for a declining species

Science.gov (United States)

Crawford, Brian A.; Moore, Clinton; Norton, Terry M.; Maerz, John C.

2018-01-01

A challenge for making conservation decisions is predicting how wildlife populations respond to multiple, concurrent threats and potential management strategies, usually under substantial uncertainty. Integrated modeling approaches can improve estimation of demographic rates necessary for making predictions, even for rare or cryptic species with sparse data, but their use in management applications is limited. We developed integrated models for a population of diamondback terrapins (Malaclemys terrapin) impacted by road-associated threats to (i) jointly estimate demographic rates from two mark-recapture datasets, while directly estimating road mortality and the impact of management actions deployed during the study; and (ii) project the population using population viability analysis under simulated management strategies to inform decision-making. Without management, population extirpation was nearly certain due to demographic impacts of road mortality, predators, and vegetation. Installation of novel flashing signage increased survival of terrapins that crossed roads by 30%. Signage, along with small roadside barriers installed during the study, increased population persistence probability, but the population was still predicted to decline. Management strategies that included actions targeting multiple threats and demographic rates resulted in the highest persistence probability, and roadside barriers, which increased adult survival, were predicted to increase persistence more than other actions. Our results support earlier findings showing mitigation of multiple threats is likely required to increase the viability of declining populations. Our approach illustrates how integrated models may be adapted to use limited data efficiently, represent system complexity, evaluate impacts of threats and management actions, and provide decision-relevant information for conservation of at-risk populations.

Accounting for Incomplete Species Detection in Fish Community Monitoring

Energy Technology Data Exchange (ETDEWEB)

McManamay, Ryan A [ORNL; Orth, Dr. Donald J [Virginia Polytechnic Institute and State University; Jager, Yetta [ORNL

2013-01-01

Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

Species longevity in North American fossil mammals.

Science.gov (United States)

Prothero, Donald R

2014-08-01

Species longevity in the fossil record is related to many paleoecological variables and is important to macroevolutionary studies, yet there are very few reliable data on average species durations in Cenozoic fossil mammals. Many of the online databases (such as the Paleobiology Database) use only genera of North American Cenozoic mammals and there are severe problems because key groups (e.g. camels, oreodonts, pronghorns and proboscideans) have no reliable updated taxonomy, with many invalid genera and species and/or many undescribed genera and species. Most of the published datasets yield species duration estimates of approximately 2.3-4.3 Myr for larger mammals, with small mammals tending to have shorter species durations. My own compilation of all the valid species durations in families with updated taxonomy (39 families, containing 431 genera and 998 species, averaging 2.3 species per genus) yields a mean duration of 3.21 Myr for larger mammals. This breaks down to 4.10-4.39 Myr for artiodactyls, 3.14-3.31 Myr for perissodactyls and 2.63-2.95 Myr for carnivorous mammals (carnivorans plus creodonts). These averages are based on a much larger, more robust dataset than most previous estimates, so they should be more reliable for any studies that need species longevity to be accurately estimated. © 2013 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

Species richness, habitable volume, and species densities in freshwater, the sea, and on land

Directory of Open Access Journals (Sweden)

Michael N Dawson

2012-09-01

Full Text Available Approximately 0.5–2.0 million eukaryotic species inhabit the seas, whereas 2.0–10.0 million inhabit freshwater or the land. Much has been made of this several-fold difference in species richness but there is little consensus about the causes. Here, I ask a related question: what is the relative density of species in marine and non-marine realms? I use recent estimates of global eukaryotic species richness and published estimates of the areal coverage and depth of habitat for freshwater, marine, and terrestrial biomes. I find that the marine realm harbors ~99.83% of the habitable volume on this planet. Eukaryotic species density of the marine realm is ~3600-fold (i.e., 3-4 orders of magnitude less than that of non-marine environments. Species–volume relationships (SVRs help reconcile actinopterygian fish diversity with global primary productivity and emphasize the interacting roles of abiotic and biotic complexity in shaping patterns of biodiversity in freshwater, the sea, and on land. Comparing SVRs of habitats within and across realms may help resolve the factors and interactions that influence species density.

Estimation of carbon sequestration by tree species in three farms in Villa Clara province

Directory of Open Access Journals (Sweden)

José Carlos García Hernández

2016-03-01

Full Text Available The research took place in two farms of the Cifuentes municipality and in a farm of the Santa Clara municipality, province of Villa Clara. It was carried out from November 2008 to May 2009, with the objective of estimating the capture of Carbon by common arboreal species in these farms. The plant biomass analyses were made according to the methodology of Mercadet and Álvarez (2005. Several parameters were analyzed. Age, height and perimeter of the plants were the most influential parameters on the amount of carbon sequestered. In this regard, we performed a multivariate curve fitting, showing the age of the plants the highest percent of dependence (54.89%. Palma Real with values between 0.81 and 0.84 t / plant and the Mango between 0.60 and 0.81 t /plant of retained Carbon, were the most outstanding in the capture of Carbon.

Estimation of the species richness of fish parasite fauna: an ecological approach

Directory of Open Access Journals (Sweden)

Ieshko Evgeny Pavlovich

2012-12-01

Full Text Available We studied the biological diversity of the parasite fauna in pike from four habitats found in northern lakes of Karelia. The curves of the expected species richness versus sampling effort (the number of examined specimens dependency were plotted. A universal approach to the description of the new species replenishment dynamics is proposed – including finding (through combinatorial analysis the median value between the fastest and the slowest paths of the species richness growth followed by approximation using logistic function . Our analysis showed that the leading ecological factors controlling the formation of the parasite species richness in a specific waterbody are the richness of infracommunities and the age composition of the host sample. The sample of 15 host specimens contains at least 80% of all species in the parasite community.

Modelling survival: exposure pattern, species sensitivity and uncertainty.

Science.gov (United States)

Ashauer, Roman; Albert, Carlo; Augustine, Starrlight; Cedergreen, Nina; Charles, Sandrine; Ducrot, Virginie; Focks, Andreas; Gabsi, Faten; Gergs, André; Goussen, Benoit; Jager, Tjalling; Kramer, Nynke I; Nyman, Anna-Maija; Poulsen, Veronique; Reichenberger, Stefan; Schäfer, Ralf B; Van den Brink, Paul J; Veltman, Karin; Vogel, Sören; Zimmer, Elke I; Preuss, Thomas G

2016-07-06

The General Unified Threshold model for Survival (GUTS) integrates previously published toxicokinetic-toxicodynamic models and estimates survival with explicitly defined assumptions. Importantly, GUTS accounts for time-variable exposure to the stressor. We performed three studies to test the ability of GUTS to predict survival of aquatic organisms across different pesticide exposure patterns, time scales and species. Firstly, using synthetic data, we identified experimental data requirements which allow for the estimation of all parameters of the GUTS proper model. Secondly, we assessed how well GUTS, calibrated with short-term survival data of Gammarus pulex exposed to four pesticides, can forecast effects of longer-term pulsed exposures. Thirdly, we tested the ability of GUTS to estimate 14-day median effect concentrations of malathion for a range of species and use these estimates to build species sensitivity distributions for different exposure patterns. We find that GUTS adequately predicts survival across exposure patterns that vary over time. When toxicity is assessed for time-variable concentrations species may differ in their responses depending on the exposure profile. This can result in different species sensitivity rankings and safe levels. The interplay of exposure pattern and species sensitivity deserves systematic investigation in order to better understand how organisms respond to stress, including humans.

Estimates of entrainment mortality for striped bass and other fish species inhabiting the Hudson River estuary

International Nuclear Information System (INIS)

Boreman, J.; Goodyear, C.P.

1988-01-01

An empirically derived age-, time-, and space-variant equation was used to estimate entrainment mortality at power plants for seven fish species inhabiting the Hudson River estuary. Entrainment mortality is expressed as a conditional rate, which is the fractional reduction in year-class strength due to entrainment if other sources of mortality are density-independent. Estimates of the conditional entrainment mortality, based on historical and projected once-through cooling operation of five power plants, were 11-22% for striped bass, 11-17% for white perch, 5-7% for Atlantic tomcod, 14-21% for American shad, 4-11% for river herring (alewife and blueback herring combined), and 35-79% for bay anchovy. Closed-cycle cooling (natural-draft cooling towers) at three of the power plants (Indian Point, Bowline Point, and Roseton) would reduce entrainment mortality of striped bass by 50-80%, of white perch by 75-80%, of Atlantic tocod by 65-70%, of American shad by 80%, of river herring by 30-90%, and of bay anchovy by 45-80%. The life stages most vulnerable to entrainment mortality were post-yolk-sac larva and entrainable size juvenile. 18 refs., 7 tabs

I~FA~TERIE VERSUS KORf)S V A~ f)ROFESSIO~ELE OFFISIERE

African Journals Online (AJOL)

hance regimental esprit, individual interest and morale as well as, not least, collective and in- dividual flexibility of mind. 3. The advantages and benefits of regimental traditions and esprit could be further ex- tended within the army by: a. Inducting National Servicemen via their future regiments. Personnel would thus be.

Eighteen microsatellite loci in Salix arbutifolia (Salicaceae) and cross-species amplification in Salix and Populus species.

Science.gov (United States)

Hoshikawa, Takeshi; Kikuchi, Satoshi; Nagamitsu, Teruyoshi; Tomaru, Nobuhiro

2009-07-01

Salix arbutifolia is a riparian dioecious tree species that is of conservation concern in Japan because of its highly restricted distribution. Eighteen polymorphic loci of dinucleotide microsatellites were isolated and characterized. Among these, estimates of the expected heterozygosity ranged from 0.350 to 0.879. Cross-species amplification was successful at 9-13 loci among six Salix species and at three loci in one Populus species. © 2009 Blackwell Publishing Ltd.

Species richness in soil bacterial communities: a proposed approach to overcome sample size bias.

Science.gov (United States)

Youssef, Noha H; Elshahed, Mostafa S

2008-09-01

Estimates of species richness based on 16S rRNA gene clone libraries are increasingly utilized to gauge the level of bacterial diversity within various ecosystems. However, previous studies have indicated that regardless of the utilized approach, species richness estimates obtained are dependent on the size of the analyzed clone libraries. We here propose an approach to overcome sample size bias in species richness estimates in complex microbial communities. Parametric (Maximum likelihood-based and rarefaction curve-based) and non-parametric approaches were used to estimate species richness in a library of 13,001 near full-length 16S rRNA clones derived from soil, as well as in multiple subsets of the original library. Species richness estimates obtained increased with the increase in library size. To obtain a sample size-unbiased estimate of species richness, we calculated the theoretical clone library sizes required to encounter the estimated species richness at various clone library sizes, used curve fitting to determine the theoretical clone library size required to encounter the "true" species richness, and subsequently determined the corresponding sample size-unbiased species richness value. Using this approach, sample size-unbiased estimates of 17,230, 15,571, and 33,912 were obtained for the ML-based, rarefaction curve-based, and ACE-1 estimators, respectively, compared to bias-uncorrected values of 15,009, 11,913, and 20,909.

Allometric Equations for Estimating Carbon Stocks in Natural Forest in New Zealand

Directory of Open Access Journals (Sweden)

Andrea Brandon

2012-09-01

Full Text Available Species-specific and mixed-species volume and above ground biomass allometric equations were developed for 15 indigenous tree species and four tree fern species in New Zealand. A mixed-species tree equation based on breast height diameter (DBH and tree height (H provided acceptable estimates of stem plus branch (>10 cm in diameter over bark volume, which was multiplied by live tree density to estimate dry matter. For dead standing spars, DBH, estimated original height, actual spar height and compatible volume/taper functions provided estimates of dead stem volume, which was multiplied by live tree density and a density modifier based on log decay class from field assessments to estimate dry matter. Live tree density was estimated using ratio estimators. Ratio estimators were based on biomass sample trees, and utilized density data from outerwood basic density surveys which were available for 35 tree species sampled throughout New Zealand. Foliage and branch ( < 10 cm in diameter over bark dry matter were estimated directly from tree DBH. Tree fern above ground dry matter was estimated using allometric equations based on DBH and H. Due to insufficient data, below ground carbon for trees was estimated using the default IPCC root/shoot ratio of 25%, but for tree ferns it was estimated using measured root/shoot ratios which averaged 20%.

Platelet glycoprotein IIb/IIIa integrin blockade with eptifibatide in coronary stent intervention: the ESPRIT trial: a randomized controlled trial.

Science.gov (United States)

O'Shea, J C; Hafley, G E; Greenberg, S; Hasselblad, V; Lorenz, T J; Kitt, M M; Strony, J; Tcheng, J E

2001-05-16

The Enhanced Suppression of the Platelet IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial showed the efficacy of adjunctive, double-bolus eptifibatide therapy in reducing ischemic complications of nonurgent coronary stent implantation at 48 hours and at 30 days. To determine whether the beneficial effects of eptifibatide persist at 6 months after treatment. Follow-up study of a randomized, double-blind, placebo-controlled, crossover-permitted trial conducted from June 1999 through February 2000. Ninety-two tertiary care centers in the United States and Canada. A total of 2064 patients scheduled to undergo nonurgent percutaneous coronary intervention with stent implantation. Patients were randomly assigned to receive placebo or eptifibatide (two 180-microg/kg boluses 10 minutes apart and continuous infusion of 2.0 microg/kg per minute), started immediately before stent implantation and continued for 18 to 24 hours. Complete follow-up data were available for 988 (95.0%) of 1040 patients given eptifibatide and 977 (95.4%) of 1024 patients given placebo. Composite rates of death or myocardial infarction (MI); death, MI, or target vessel revascularization; and their individual components 6 months after enrollment, compared between the 2 groups. By 6 months, the composite end point of death or MI had occurred in 7.5% of eptifibatide-treated patients and in 11.5% of placebo-treated patients (hazard ratio [HR], 0.63; 95% confidence interval [CI], 0.47-0.84; P =.002). The composite of death, MI, or target vessel revascularization was 14.2% in eptifibatide-treated patients vs 18.3% in placebo-treated patients (HR, 0.75; 95% CI, 0.60-0.93; P =.008). Most of this benefit accrued early (<48 hours after initiation of therapy) and was maintained through 6 months. Six-month mortality in the eptifibatide group was 0.8% vs 1.4% in the placebo group (HR, 0.56; 95% CI, 0.24-1.34; P =.19) and target vessel revascularization occurred in 8.6% of the eptifibatide group vs 9.4% of

Research on an estimation method of DOA for wireless location based on TD-SCDMA

Science.gov (United States)

Zhang, Yi; Luo, Yuan; Cheng, Shi-xin

2004-03-01

To meet the urgent need of personal communication and hign-speed data services,the standardization and products development for International Mobile Telecommunication-2000 (IMT-2000) have become a hot point in wordwide. The wireless location for mobile terminals has been an important research project. Unlike GPS which is located by 24 artificial satellities, it is based on the base-station of wireless cell network, and the research and development of it are correlative with IMT-2000. While the standard for the third generation mobile telecommunication (3G)-TD-SCDMA, which is proposed by China and the intellective property right of which is possessed by Chinese, is adopted by ITU-T at the first time, the research for wireless location based on TD-SCDMA has theoretic meaning, applied value and marketable foreground. First,the basic principle and method for wireless location, i.e. Direction of Angle(DOA), Time of Arrival(TOA) or Time Difference of Arrival(TDOA), hybridized location(TOA/DOA,TDOA/DOA,TDOA/DOA),etc. is introduced in the paper. So the research of DOA is very important in wireless location. Next, Main estimation methods of DOA for wireless location, i.e. ESPRIT, MUSIC, WSF, Min-norm, etc. are researched in the paper. In the end, the performances of DOA estimation for wireless location based on mobile telecommunication network are analyzed by the research of theory and simulation experiment and the contrast algorithms between and Cramer-Rao Bound. Its research results aren't only propitious to the choice of algorithms for wireless location, but also to the realization of new service of wireless location .

Can Observation Skills of Citizen Scientists Be Estimated Using Species Accumulation Curves?

Directory of Open Access Journals (Sweden)

Steve Kelling

Full Text Available Volunteers are increasingly being recruited into citizen science projects to collect observations for scientific studies. An additional goal of these projects is to engage and educate these volunteers. Thus, there are few barriers to participation resulting in volunteer observers with varying ability to complete the project's tasks. To improve the quality of a citizen science project's outcomes it would be useful to account for inter-observer variation, and to assess the rarely tested presumption that participating in a citizen science projects results in volunteers becoming better observers. Here we present a method for indexing observer variability based on the data routinely submitted by observers participating in the citizen science project eBird, a broad-scale monitoring project in which observers collect and submit lists of the bird species observed while birding. Our method for indexing observer variability uses species accumulation curves, lines that describe how the total number of species reported increase with increasing time spent in collecting observations. We find that differences in species accumulation curves among observers equates to higher rates of species accumulation, particularly for harder-to-identify species, and reveals increased species accumulation rates with continued participation. We suggest that these properties of our analysis provide a measure of observer skill, and that the potential to derive post-hoc data-derived measurements of participant ability should be more widely explored by analysts of data from citizen science projects. We see the potential for inferential results from analyses of citizen science data to be improved by accounting for observer skill.

Implementation of QR-decomposition based on CORDIC for unitary MUSIC algorithm

Science.gov (United States)

Lounici, Merwan; Luan, Xiaoming; Saadi, Wahab

2013-07-01

The DOA (Direction Of Arrival) estimation with subspace methods such as MUSIC (MUltiple SIgnal Classification) and ESPRIT (Estimation of Signal Parameters via Rotational Invariance Technique) is based on an accurate estimation of the eigenvalues and eigenvectors of covariance matrix. QR decomposition is implemented with the Coordinate Rotation DIgital Computer (CORDIC) algorithm. QRD requires only additions and shifts [6], so it is faster and more regular than other methods. In this article the hardware architecture of an EVD (Eigen Value Decomposition) processor based on TSA (triangular systolic array) for QR decomposition is proposed. Using Xilinx System Generator (XSG), the design is implemented and the estimated logic device resource values are presented for different matrix sizes.

Tree-growth analyses to estimate tree species' drought tolerance

NARCIS (Netherlands)

Eilmann, B.; Rigling, A.

2012-01-01

Climate change is challenging forestry management and practices. Among other things, tree species with the ability to cope with more extreme climate conditions have to be identified. However, while environmental factors may severely limit tree growth or even cause tree death, assessing a tree

Weed Growth Stage Estimator Using Deep Convolutional Neural Networks

DEFF Research Database (Denmark)

Teimouri, Nima; Dyrmann, Mads; Nielsen, Per Rydahl

2018-01-01

This study outlines a new method of automatically estimating weed species and growth stages (from cotyledon until eight leaves are visible) of in situ images covering 18 weed species or families. Images of weeds growing within a variety of crops were gathered across variable environmental conditi...... in estimating the number of leaves and 96% accuracy when accepting a deviation of two leaves. These results show that this new method of using deep convolutional neural networks has a relatively high ability to estimate early growth stages across a wide variety of weed species....

Biomimetic chromatographic analysis of selenium species: Application for the estimation of their pharmacokinetic properties

Energy Technology Data Exchange (ETDEWEB)

Tsopelas, Fotios [National Technical University of Athens, Laboratory of Inorganic and Analytical Chemistry, School of Chemical Engineering, Athens (Greece); University of Athens, Laboratory of Pharmaceutical Chemistry, School of Pharmacy, Athens (Greece); Tsantili-Kakoulidou, Anna [University of Athens, Laboratory of Pharmaceutical Chemistry, School of Pharmacy, Athens (Greece); Ochsenkuehn-Petropoulou, Maria [National Technical University of Athens, Laboratory of Inorganic and Analytical Chemistry, School of Chemical Engineering, Athens (Greece)

2010-07-15

The retention behavior of selenites, selenates, seleno-dl-methionine, selenocystine, selenocystamine, selenourea, dimethyl selenide, and dimethyl diselenide was investigated by means of biomimetic liquid chromatography. For this purpose, two immobilized artificial membrane (IAM) columns, namely, IAM.PC.DD2 and IAM.PC.MG, and two immobilized plasma protein columns, human serum albumin (HSA) and {alpha}{sub 1}-acid glycoprotein (AGP) columns, were employed using different mobile phase conditions in respect to pH and buffer composition. In general, satisfactory interrelations between retention factors obtained with the two IAM stationary phases and HSA/AGP columns were obtained. Large differences were observed between biomimetic retention factors and octanol-water logD values, since the latter fail to describe electrostatic interactions. In contrast, despite the column diversity, the net retention outcome on all four biomimetic columns was quite similar, especially in the presence of phosphate-buffered saline, which by its effective shielding alleviates the differences between the stationary phases. Of the two IAM columns, IAM.PC.DD2 showed better performance when compared with HSA and AGP columns as well as to octanol-water partitioning. Biomimetic chromatographic indices were further used to estimate the percentage of human oral absorption and plasma protein binding of the eight selenium species investigated, according to equations previously reported in the literature. The estimated values of human oral absorption imply moderate absorption only for dimethyl diselenide, which also may exhibit considerable plasma protein binding. Moderate affinity for plasma proteins should also be expected for dimethyl selenide and selenocystamine. (orig.)

Using GIS mapping of the extent of nearshore rocky reefs to estimate the abundance and reproductive output of important fishery species.

Directory of Open Access Journals (Sweden)

Jeremy T Claisse

Full Text Available Kelp Bass (Paralabrax clathratus and California Sheephead (Semicossyphus pulcher are economically and ecologically valuable rocky reef fishes in southern California, making them likely indicator species for evaluating resource management actions. Multiple spatial datasets, aerial and satellite photography, underwater observations and expert judgment were used to produce a comprehensive map of nearshore natural rocky reef habitat for the Santa Monica Bay region (California, USA. It was then used to examine the relative contribution of individual reefs to a regional estimate of abundance and reproductive potential of the focal species. For the reefs surveyed for fishes (i.e. 18 out of the 22 in the region, comprising 82% the natural rocky reef habitat 30% was produced from a relatively small proportion of the regional reef area (c. 10%. Natural nearshore rocky reefs make up only 11% of the area in the newly designated MPAs in this region, but results provide some optimism that regional fisheries could benefit through an increase in overall reproductive output, if adequate increases in size structure of targeted species are realized.

A probabilistic method for species sensitivity distributions taking into account the inherent uncertainty and variability of effects to estimate environmental risk.

Science.gov (United States)

Gottschalk, Fadri; Nowack, Bernd

2013-01-01

This article presents a method of probabilistically computing species sensitivity distributions (SSD) that is well-suited to cope with distinct data scarcity and variability. First, a probability distribution that reflects the uncertainty and variability of sensitivity is modeled for each species considered. These single species sensitivity distributions are then combined to create an SSD for a particular ecosystem. A probabilistic estimation of the risk is carried out by combining the probability of critical environmental concentrations with the probability of organisms being impacted negatively by these concentrations. To evaluate the performance of the method, we developed SSD and risk calculations for the aquatic environment exposed to triclosan. The case studies showed that the probabilistic results reflect the empirical information well, and the method provides a valuable alternative or supplement to more traditional methods for calculating SSDs based on averaging raw data and/or on using theoretical distributional forms. A comparison and evaluation with single SSD values (5th-percentile [HC5]) revealed the robustness of the proposed method. Copyright © 2012 SETAC.

Integrative taxonomy by molecular species delimitation: multi-locus data corroborate a new species of Balkan Drusinae micro-endemics.

Science.gov (United States)

Vitecek, Simon; Kučinić, Mladen; Previšić, Ana; Živić, Ivana; Stojanović, Katarina; Keresztes, Lujza; Bálint, Miklós; Hoppeler, Felicitas; Waringer, Johann; Graf, Wolfram; Pauls, Steffen U

2017-06-06

Taxonomy offers precise species identification and delimitation and thus provides basic information for biological research, e.g. through assessment of species richness. The importance of molecular taxonomy, i.e., the identification and delimitation of taxa based on molecular markers, has increased in the past decade. Recently developed exploratory tools now allow estimating species-level diversity in multi-locus molecular datasets. Here we use molecular species delimitation tools that either quantify differences in intra- and interspecific variability of loci, or divergence times within and between species, or perform coalescent species tree inference to estimate species-level entities in molecular genetic datasets. We benchmark results from these methods against 14 morphologically readily differentiable species of a well-defined subgroup of the diverse Drusinae subfamily (Trichoptera, Limnephilidae). Using a 3798 bp (6 loci) molecular data set we aim to corroborate a geographically isolated new species by integrating comparative morphological studies and molecular taxonomy. Our results indicate that only multi-locus species delimitation provides taxonomically relevant information. The data further corroborate the new species Drusus zivici sp. nov. We provide differential diagnostic characters and describe the male, female and larva of this new species and discuss diversity patterns of Drusinae in the Balkans. We further discuss potential and significance of molecular species delimitation. Finally we argue that enhancing collaborative integrative taxonomy will accelerate assessment of global diversity and completion of reference libraries for applied fields, e.g., conservation and biomonitoring.

Estimating linear temporal trends from aggregated environmental monitoring data

Science.gov (United States)

Erickson, Richard A.; Gray, Brian R.; Eager, Eric A.

2017-01-01

Trend estimates are often used as part of environmental monitoring programs. These trends inform managers (e.g., are desired species increasing or undesired species decreasing?). Data collected from environmental monitoring programs is often aggregated (i.e., averaged), which confounds sampling and process variation. State-space models allow sampling variation and process variations to be separated. We used simulated time-series to compare linear trend estimations from three state-space models, a simple linear regression model, and an auto-regressive model. We also compared the performance of these five models to estimate trends from a long term monitoring program. We specifically estimated trends for two species of fish and four species of aquatic vegetation from the Upper Mississippi River system. We found that the simple linear regression had the best performance of all the given models because it was best able to recover parameters and had consistent numerical convergence. Conversely, the simple linear regression did the worst job estimating populations in a given year. The state-space models did not estimate trends well, but estimated population sizes best when the models converged. We found that a simple linear regression performed better than more complex autoregression and state-space models when used to analyze aggregated environmental monitoring data.

Anthropogenic range contractions bias species climate change forecasts

Science.gov (United States)

Faurby, Søren; Araújo, Miguel B.

2018-03-01

Forecasts of species range shifts under climate change most often rely on ecological niche models, in which characterizations of climate suitability are highly contingent on the species range data used. If ranges are far from equilibrium under current environmental conditions, for instance owing to local extinctions in otherwise suitable areas, modelled environmental suitability can be truncated, leading to biased estimates of the effects of climate change. Here we examine the impact of such biases on estimated risks from climate change by comparing models of the distribution of North American mammals based on current ranges with ranges accounting for historical information on species ranges. We find that estimated future diversity, almost everywhere, except in coastal Alaska, is drastically underestimated unless the full historical distribution of the species is included in the models. Consequently forecasts of climate change impacts on biodiversity for many clades are unlikely to be reliable without acknowledging anthropogenic influences on contemporary ranges.

Estimating cyclopoid copepod species richness and geographical distribution (Crustacea across a large hydrographical basin: comparing between samples from water column (plankton and macrophyte stands

Directory of Open Access Journals (Sweden)

Gilmar Perbiche-Neves

2014-06-01

Full Text Available Species richness and geographical distribution of Cyclopoida freshwater copepods were analyzed along the "La Plata" River basin. Ninety-six samples were taken from 24 sampling sites, twelve sites for zooplankton in open waters and twelve sites for zooplankton within macrophyte stands, including reservoirs and lotic stretches. There were, on average, three species per sample in the plankton compared to five per sample in macrophytes. Six species were exclusive to the plankton, 10 to macrophyte stands, and 17 were common to both. Only one species was found in similar proportions in plankton and macrophytes, while five species were widely found in plankton, and thirteen in macrophytes. The distinction between species from open water zooplankton and macrophytes was supported by nonmetric multidimensional analysis. There was no distinct pattern of endemicity within the basin, and double sampling contributes to this result. This lack of sub-regional faunal differentiation is in accordance with other studies that have shown that cyclopoids generally have wide geographical distribution in the Neotropics and that some species there are cosmopolitan. This contrasts with other freshwater copepods such as Calanoida and some Harpacticoida. We conclude that sampling plankton and macrophytes together provided a more accurate estimate of the richness and geographical distribution of these organisms than sampling in either one of those zones alone.

Analysis of a normalized QR filter using Bayesian description of propagated data

Czech Academy of Sciences Publication Activity Database

Kadlec, Jiří; Schier, Jan

1999-01-01

Roč. 13, č. 6 (1999), s. 487-505 ISSN 0890-6327 Grant - others:Commission EC(XE) ESPRIT 23544 HSLA; Commission EC(XE) ESPRIT 25729 ProDaCTool; MŠMT(CZ) OK 314; MŠMT(CZ) OK 317 Program:OK; OK Institutional research plan: AV0Z1075907 Subject RIV: JC - Computer Hardware ; Software Impact factor: 0.291, year: 1999

Web-based Interspecies Correlation Estimation

Science.gov (United States)

Web-ICE estimates acute toxicity (LC50/LD50) of a chemical to a species, genus, or family from the known toxicity of the chemical to a surrogate species. Web-ICE has modules to predict acute toxicity to aquatic (fish and invertebrates) and wildlife (birds and mammals) taxa for us...

The stock of invasive insect species and its economic determinants.

Science.gov (United States)

Hlasny, Vladimir

2011-06-01

Invasions of nonindigenous organisms have long been linked to trade, but the contribution of individual trade pathways remains poorly understood, because species are not observed immediately upon arrival and the number of species arriving annually is unknown. Species interception records may count both new arrivals and species long introduced. Furthermore, the stock of invasive insect species already present is unknown. In this study, a state-space model is used to infer the stock of detected as well as undetected invasive insect species established in the United States. A system of equations is estimated jointly to distinguish the patterns of introduction, identification, and eradication. Introductions of invasive species are modeled as dependent on the volume of trade and arrival of people. Identifications depend on the public efforts at invasive species research, as well as on the established stock of invasive species that remain undetected. Eradications of both detected and undetected invasive species depend on containment and quarantine efforts, as well as on the stock of all established invasive species. These patterns are estimated by fitting the predicted number of invasive species detections to the observed record in the North American Non-Indigenous Arthropod Database. The results indicate that agricultural imports are the most important pathway of introduction, followed by immigration of people. Expenditures by the U.S. Department of Agriculture and the Agricultural Research Service are found to explain the species identification record well. Between three and 38 invasive insect species are estimated to be established in the United States undetected.

Quantitative estimates of coral reef substrate and species type derived objectively from photographic images taken at twenty-eight sites in the Hawaiian islands, 2002-2004 (NODC Accession 0002313)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset consists of CRAMP surveys taken in 2002-2004 and includes quantitative estimates of substrate and species type. From the data percent coverage of a...

SPECIES-SPECIFIC FOREST VARIABLE ESTIMATION USING NON-PARAMETRIC MODELING OF MULTI-SPECTRAL PHOTOGRAMMETRIC POINT CLOUD DATA

Directory of Open Access Journals (Sweden)

J. Bohlin

2012-07-01

Full Text Available The recent development in software for automatic photogrammetric processing of multispectral aerial imagery, and the growing nation-wide availability of Digital Elevation Model (DEM data, are about to revolutionize data capture for forest management planning in Scandinavia. Using only already available aerial imagery and ALS-assessed DEM data, raster estimates of the forest variables mean tree height, basal area, total stem volume, and species-specific stem volumes were produced and evaluated. The study was conducted at a coniferous hemi-boreal test site in southern Sweden (lat. 58° N, long. 13° E. Digital aerial images from the Zeiss/Intergraph Digital Mapping Camera system were used to produce 3D point-cloud data with spectral information. Metrics were calculated for 696 field plots (10 m radius from point-cloud data and used in k-MSN to estimate forest variables. For these stands, the tree height ranged from 1.4 to 33.0 m (18.1 m mean, stem volume from 0 to 829 m3 ha-1 (249 m3 ha-1 mean and basal area from 0 to 62.2 m2 ha-1 (26.1 m2 ha-1 mean, with mean stand size of 2.8 ha. Estimates made using digital aerial images corresponding to the standard acquisition of the Swedish National Land Survey (Lantmäteriet showed RMSEs (in percent of the surveyed stand mean of 7.5% for tree height, 11.4% for basal area, 13.2% for total stem volume, 90.6% for pine stem volume, 26.4 for spruce stem volume, and 72.6% for deciduous stem volume. The results imply that photogrammetric matching of digital aerial images has significant potential for operational use in forestry.

Interoperability of Standards for Robotics in CIME

DEFF Research Database (Denmark)

Kroszynski, Uri; Sørensen, Torben; Ludwig, Arnold

1997-01-01

Esprit Project 6457 "Interoperability of Standards for Robotics in CIME (InterRob)" belongs to the Subprogramme "Integration in Manufacturing" of Esprit, the European Specific Programme for Research and Development in Information Technology supported by the European Commision.The first main goal...... of InterRob was to close the information chain between product design, simulation, programming, and robot control by developing standardized interfaces and their software implementation for standards STEP (International Standard for the Exchange of Product model data, ISO 10303) and IRL (Industrial Robot...... Language, DIN 66312). This is a continuation of the previous Esprit projects CAD*I and NIRO, which developed substantial basics of STEP.The InterRob approach is based on standardized models for product geometry, kinematics, robotics, dynamics and control, hence on a coherent neutral information model...

Interleukin-2 therapy in patients with HIV infection.

Science.gov (United States)

Abrams, D; Lévy, Y; Losso, M H; Babiker, A; Collins, G; Cooper, D A; Darbyshire, J; Emery, S; Fox, L; Gordin, F; Lane, H C; Lundgren, J D; Mitsuyasu, R; Neaton, J D; Phillips, A; Routy, J P; Tambussi, G; Wentworth, D

2009-10-15

Used in combination with antiretroviral therapy, subcutaneous recombinant interleukin-2 raises CD4+ cell counts more than does antiretroviral therapy alone. The clinical implication of these increases is not known. We conducted two trials: the Subcutaneous Recombinant, Human Interleukin-2 in HIV-Infected Patients with Low CD4+ Counts under Active Antiretroviral Therapy (SILCAAT) study and the Evaluation of Subcutaneous Proleukin in a Randomized International Trial (ESPRIT). In each, patients infected with the human immunodeficiency virus (HIV) who had CD4+ cell counts of either 50 to 299 per cubic millimeter (SILCAAT) or 300 or more per cubic millimeter (ESPRIT) were randomly assigned to receive interleukin-2 plus antiretroviral therapy or antiretroviral therapy alone. The interleukin-2 regimen consisted of cycles of 5 consecutive days each, administered at 8-week intervals. The SILCAAT study involved six cycles and a dose of 4.5 million IU of interleukin-2 twice daily; ESPRIT involved three cycles and a dose of 7.5 million IU twice daily. Additional cycles were recommended to maintain the CD4+ cell count above predefined target levels. The primary end point of both studies was opportunistic disease or death from any cause. In the SILCAAT study, 1695 patients (849 receiving interleukin-2 plus antiretroviral therapy and 846 receiving antiretroviral therapy alone) who had a median CD4+ cell count of 202 cells per cubic millimeter were enrolled; in ESPRIT, 4111 patients (2071 receiving interleukin-2 plus antiretroviral therapy and 2040 receiving antiretroviral therapy alone) who had a median CD4+ cell count of 457 cells per cubic millimeter were enrolled. Over a median follow-up period of 7 to 8 years, the CD4+ cell count was higher in the interleukin-2 group than in the group receiving antiretroviral therapy alone--by 53 and 159 cells per cubic millimeter, on average, in the SILCAAT study and ESPRIT, respectively. Hazard ratios for opportunistic disease or death from

Determining Optimal New Generation Satellite Derived Metrics for Accurate C3 and C4 Grass Species Aboveground Biomass Estimation in South Africa

Directory of Open Access Journals (Sweden)

Cletah Shoko

2018-04-01

Full Text Available While satellite data has proved to be a powerful tool in estimating C3 and C4 grass species Aboveground Biomass (AGB, finding an appropriate sensor that can accurately characterize the inherent variations remains a challenge. This limitation has hampered the remote sensing community from continuously and precisely monitoring their productivity. This study assessed the potential of a Sentinel 2 MultiSpectral Instrument, Landsat 8 Operational Land Imager, and WorldView-2 sensors, with improved earth imaging characteristics, in estimating C3 and C4 grasses AGB in the Cathedral Peak, South Africa. Overall, all sensors have shown considerable potential in estimating species AGB; with the use of different combinations of the derived spectral bands and vegetation indices producing better accuracies. However, WorldView-2 derived variables yielded better predictive accuracies (R2 ranging between 0.71 and 0.83; RMSEs between 6.92% and 9.84%, followed by Sentinel 2, with R2 between 0.60 and 0.79; and an RMSE 7.66% and 14.66%. Comparatively, Landsat 8 yielded weaker estimates, with R2 ranging between 0.52 and 0.71 and high RMSEs ranging between 9.07% and 19.88%. In addition, spectral bands located within the red edge (e.g., centered at 0.705 and 0.745 µm for Sentinel 2, SWIR, and NIR, as well as the derived indices, were found to be very important in predicting C3 and C4 AGB from the three sensors. The competence of these bands, especially of the free-available Landsat 8 and Sentinel 2 dataset, was also confirmed from the fusion of the datasets. Most importantly, the three sensors managed to capture and show the spatial variations in AGB for the target C3 and C4 grassland area. This work therefore provides a new horizon and a fundamental step towards C3 and C4 grass productivity monitoring for carbon accounting, forage mapping, and modelling the influence of environmental changes on their productivity.

L’esprit du droit : modèle russe contre modèle français Sense of law : Russian model versus French model

Directory of Open Access Journals (Sweden)

Chantal Kourilsky-Augeven

2009-06-01

Full Text Available Un stéréotype récurrent dans la littérature russe distingue entre un « esprit » ou « sens du droit » qui serait propre à la culture française et un « sens de la justice » qui serait propre à la culture russe. Cette distinction s’appliquerait au premier chef à une religion catholique qualifiée de juridique en ce qu’elle serait comptable des péchés et une religion orthodoxe davantage fondée sur l’amour. Mais le modèle traditionnel russe pris en compte par la littérature, l’histoire et l’anthropologie ne saurait être statique. Deux enquêtes menées auprès de populations d’adolescents et d’adultes en 1993 et 2000 montrent comment le modèle russe fondé sur la justice et la morale se juridicise et en arrive à rejoindre le modèle français sur plusieurs points.A recurring stereotype in Russian literature opposes a « sense of law » inherent to French culture to a « sense of justice » inherent to Russian culture.This distinction is first and foremost applied to a catholic religion qualified as legalistic due to a strict accounting of sins and an orthodox religion essentially based on love. But the traditional Russian model described by literature, history and anthropology is anything but static. Two research projects carried out among an adolescent and adult population sample in 1993 and 2000 show how a Russian model based on justice and morals is being judiciarized and is increasingly moving towards the French model on several accounts.

Adaptive cluster sampling: An efficient method for assessing inconspicuous species

Science.gov (United States)

Andrea M. Silletti; Joan Walker

2003-01-01

Restorationistis typically evaluate the success of a project by estimating the population sizes of species that have been planted or seeded. Because total census is raely feasible, they must rely on sampling methods for population estimates. However, traditional random sampling designs may be inefficient for species that, for one reason or another, are challenging to...

How many species of cichlid fishes are there in African lakes?

Science.gov (United States)

Turner, G F; Seehausen, O; Knight, M E; Allender, C J; Robinson, R L

2001-03-01

The endemic cichlid fishes of Lakes Malawi, Tanganyika and Victoria are textbook examples of explosive speciation and adaptive radiation, and their study promises to yield important insights into these processes. Accurate estimates of species richness of lineages in these lakes, and elsewhere, will be a necessary prerequisite for a thorough comparative analysis of the intrinsic and extrinsic factors influencing rates of diversification. This review presents recent findings on the discoveries of new species and species flocks and critically appraises the relevant evidence on species richness from recent studies of polymorphism and assortative mating, generally using behavioural and molecular methods. Within the haplochromines, the most species-rich lineage, there are few reported cases of postzygotic isolation, and these are generally among allopatric taxa that are likely to have diverged a relatively long time in the past. However, many taxa, including many which occur sympatrically and do not interbreed in nature, produce viable, fertile hybrids. Prezygotic barriers are more important, and persist in laboratory conditions in which environmental factors have been controlled, indicating the primary importance of direct mate preferences. Studies to date indicate that estimates of alpha (within-site) diversity appear to be robust. Although within-species colour polymorphisms are common, these have been taken into account in previous estimates of species richness. However, overall estimates of species richness in Lakes Malawi and Victoria are heavily dependent on the assignation of species status to allopatric populations differing in male colour. Appropriate methods for testing the specific status of allopatric cichlid taxa are reviewed and preliminary results presented.

The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats

OpenAIRE

Coll, Marta; Piroddi, Chiara; Steenbeek, Jeroen; Kaschner, Kristin; Ben Rais Lasram, Frida; Aguzzi, Jacopo; Ballesteros, Enric; Bianchi, Carlo Nike; Corbera, Jordi; Dailianis, Thanos; Danovaro, Roberto; Estrada, Marta; Froglia, Carlo; Galil, Bella S.; Gasol, Josep M.

2010-01-01

The Mediterranean Sea is a marine biodiversity hot spot. Here we combined an extensive literature analysis with expert opinions to update publicly available estimates of major taxa in this marine ecosystem and to revise and update several species lists. We also assessed overall spatial and temporal patterns of species diversity and identified major changes and threats. Our results listed approximately 17,000 marine species occurring in the Mediterra- nean Sea. However, our estimates of marine...

DOD and Coast Guard: Actions Needed to Increase Oversight and Management Information on Hazing Incidents Involving Servicemembers

Science.gov (United States)

2016-02-01

of passage can instill esprit de corps and loyalty and are included in many traditions throughout DOD and the Coast Guard. However, at times these...of passage can be effective tools to instill esprit de corps and loyalty among servicemembers and are included in many traditions throughout the...tricks; threatening violence or bodily harm; striking; branding ; shaving; painting; or forcing or requiring the consumption of food, alcohol, drugs

Efficient species-level monitoring at the landscape scale

Science.gov (United States)

Barry R. Noon; Larissa L. Bailey; Thomas D. Sisk; Kevin S. McKelvey

2012-01-01

Monitoring the population trends of multiple animal species at a landscape scale is prohibitively expensive. However, advances in survey design, statistical methods, and the ability to estimate species presence on the basis of detection­nondetection data have greatly increased the feasibility of species-level monitoring. For example, recent advances in monitoring make...

Isoprene emission from tropical tree species

International Nuclear Information System (INIS)

Padhy, P.K.; Varshney, C.K.

2005-01-01

Foliar emission of isoprene was measured in nine commonly growing tree species of Delhi, India. Dynamic flow enclosure technique was used and gas samples were collected onto Tenax-GC/Carboseive cartridges, which were then attached to the sample injection system in the gas chromatograph (GC). Eluting compounds were analysed using a flame ionisation detector (FID). Out of the nine tree species, isoprene emission was found in six species (Eucalyptus sp., Ficus benghalensis, Ficus religiosa, Mangifera indica, Melia azedarach, and Syzygium jambolanum), whereas, in the remaining three tree species (Alstonia scholaris, Azadirachta indica, and Cassia fistula) no isoprene emission was detected or the levels of emission were negligible or below the detection limit (BDL). Among six tree species, the highest hourly emission (10.2±6.8 μg g -1 leaf dry weight, average of five seasons) was observed in Ficus religiosa, while minimum emission was from Melia azedarach (2.2±4.9 μg g -1 leaf dry weight, average of five seasons). Isoprene emission (average of six species), over five seasons, was found to vary between 3.9 and 8.5 μg g -1 leaf dry weight during the rainy season. In addition, significant diurnal variation in isoprene emission was observed in each species. The preliminary estimate made in this study on the annual biogenic VOC emission from India may probably be the first of its kind from this part of the world. - Isoprene flux (diurnal and seasonal) from some tropical tree species was estimated and a regional comparison was made

Isoprene emission from tropical tree species

Energy Technology Data Exchange (ETDEWEB)

Padhy, P.K. [School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110 067 (India)]. E-mail: padhypk2003@yahoo.com; Varshney, C.K. [School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110 067 (India)

2005-05-01

Foliar emission of isoprene was measured in nine commonly growing tree species of Delhi, India. Dynamic flow enclosure technique was used and gas samples were collected onto Tenax-GC/Carboseive cartridges, which were then attached to the sample injection system in the gas chromatograph (GC). Eluting compounds were analysed using a flame ionisation detector (FID). Out of the nine tree species, isoprene emission was found in six species (Eucalyptus sp., Ficus benghalensis, Ficus religiosa, Mangifera indica, Melia azedarach, and Syzygium jambolanum), whereas, in the remaining three tree species (Alstonia scholaris, Azadirachta indica, and Cassia fistula) no isoprene emission was detected or the levels of emission were negligible or below the detection limit (BDL). Among six tree species, the highest hourly emission (10.2{+-}6.8 {mu}g g{sup -1} leaf dry weight, average of five seasons) was observed in Ficus religiosa, while minimum emission was from Melia azedarach (2.2{+-}4.9 {mu}g g{sup -1} leaf dry weight, average of five seasons). Isoprene emission (average of six species), over five seasons, was found to vary between 3.9 and 8.5 {mu}g g{sup -1} leaf dry weight during the rainy season. In addition, significant diurnal variation in isoprene emission was observed in each species. The preliminary estimate made in this study on the annual biogenic VOC emission from India may probably be the first of its kind from this part of the world. - Isoprene flux (diurnal and seasonal) from some tropical tree species was estimated and a regional comparison was made.

Invasive Species Science Branch: research and management tools for controlling invasive species

Science.gov (United States)

Reed, Robert N.; Walters, Katie D.

2015-01-01

Invasive, nonnative species of plants, animals, and disease organisms adversely affect the ecosystems they enter. Like “biological wildfires,” they can quickly spread and affect nearly all terrestrial and aquatic ecosystems. Invasive species have become one of the greatest environmental challenges of the 21st century in economic, environmental, and human health costs, with an estimated effect in the United States of more than $120 billion per year. Managers of the Department of the Interior and other public and private lands often rank invasive species as their top resource management problem. The Invasive Species Science Branch of the Fort Collins Science Center provides research and technical assistance relating to management concerns for invasive species, including understanding how these species are introduced, identifying areas vulnerable to invasion, forecasting invasions, and developing control methods. To disseminate this information, branch scientists are developing platforms to share invasive species information with DOI cooperators, other agency partners, and the public. From these and other data, branch scientists are constructing models to understand and predict invasive species distributions for more effective management. The branch also has extensive herpetological and population biology expertise that is applied to harmful reptile invaders such as the Brown Treesnake on Guam and Burmese Python in Florida.

Upscaling species richness and abundances in tropical forests.

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Tovo, Anna; Suweis, Samir; Formentin, Marco; Favretti, Marco; Volkov, Igor; Banavar, Jayanth R; Azaele, Sandro; Maritan, Amos

2017-10-01

The quantification of tropical tree biodiversity worldwide remains an open and challenging problem. More than two-fifths of the number of worldwide trees can be found either in tropical or in subtropical forests, but only ≈0.000067% of species identities are known. We introduce an analytical framework that provides robust and accurate estimates of species richness and abundances in biodiversity-rich ecosystems, as confirmed by tests performed on both in silico-generated and real forests. Our analysis shows that the approach outperforms other methods. In particular, we find that upscaling methods based on the log-series species distribution systematically overestimate the number of species and abundances of the rare species. We finally apply our new framework on 15 empirical tropical forest plots and quantify the minimum percentage cover that should be sampled to achieve a given average confidence interval in the upscaled estimate of biodiversity. Our theoretical framework confirms that the forests studied are comprised of a large number of rare or hyper-rare species. This is a signature of critical-like behavior of species-rich ecosystems and can provide a buffer against extinction.

Rates of development of immatures of three species of Chrysomya (Diptera: Calliphoridae) reared in different types of animal tissues: implications for estimating the postmortem interval.

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Thyssen, Patricia Jacqueline; de Souza, Carina Mara; Shimamoto, Paula Midori; Salewski, Thais de Britto; Moretti, Thiago Carvalho

2014-09-01

Blowflies have major medical and sanitary importance because they can be vectors of viruses, bacteria, and helminths and are also causative agents of myiasis. Also, these flies, especially those belonging to the genus Chrysomya, are among the first insects to arrive at carcasses and are therefore valuable in providing data for the estimation of the minimum postmortem interval (PMImin). The PMImin can be calculated by assessing the weight, length, or development stage of blowfly larvae. Lack of information on the variables that might affect these parameters in different fly species can generate inaccuracies in estimating the PMImin. This study evaluated the effects of different types of bovine tissues (the liver, muscle, tongue, and stomach) and chicken heart on the development rates of larvae of Chrysomya albiceps Wiedemann, Chrysomya megacephala Fabricius, and Chrysomya putoria Wiedemann (Diptera: Calliphoridae). The efficiency of each rearing substrate was assessed by maggot weight gain (mg), larval development time (h), larval and pupal survival (%), and emergence interval (h). The development rates of larvae of all blowfly species studied here were directly influenced by the type of food substrate. Tissues that have high contents of protein and fat (muscle and heart) allowed the highest larval weight gain. For bovine liver, all Chrysomya species showed slower growth, by as much as 48 h, compared to the other tissues. Different rates of development are probably associated with specific energy requirements of calliphorids and the nutritional composition of each type of food.

Phase Two Protected Species Valuation

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Nonmarket valuation research has produced economic value estimates for a variety of threatened, endangered, and rare species around the world. Although over 40 value...

Phase One Protected Species Valuation

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Nonmarket valuation research has produced economic value estimates for a variety of threatened, endangered, and rare species around the world. Although over 40 value...

Estimating raptor nesting success: old and new approaches

Science.gov (United States)

Brown, Jessi L.; Steenhof, Karen; Kochert, Michael N.; Bond, Laura

2013-01-01

Studies of nesting success can be valuable in assessing the status of raptor populations, but differing monitoring protocols can present unique challenges when comparing populations of different species across time or geographic areas. We used large datasets from long-term studies of 3 raptor species to compare estimates of apparent nest success (ANS, the ratio of successful to total number of nesting attempts), Mayfield nesting success, and the logistic-exposure model of nest survival. Golden eagles (Aquila chrysaetos), prairie falcons (Falco mexicanus), and American kestrels (F. sparverius) differ in their breeding biology and the methods often used to monitor their reproduction. Mayfield and logistic-exposure models generated similar estimates of nesting success with similar levels of precision. Apparent nest success overestimated nesting success and was particularly sensitive to inclusion of nesting attempts discovered late in the nesting season. Thus, the ANS estimator is inappropriate when exact point estimates are required, especially when most raptor pairs cannot be located before or soon after laying eggs. However, ANS may be sufficient to assess long-term trends of species in which nesting attempts are highly detectable.

A comparison of morphological and molecular-based surveys to estimate the species richness of Chaetoceros and Thalassiosira (bacillariophyta, in the Bay of Fundy.

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Sarah E Hamsher

Full Text Available The goal of this study was to compare the ability of morphology and molecular-based surveys to estimate species richness for two species-rich diatom genera, Chaetoceros Ehrenb. and Thalassiosira Cleve, in the Bay of Fundy. Phytoplankton tows were collected from two sites at intervals over two years and subsampled for morphology-based surveys (2010, 2011, a culture-based DNA reference library (DRL; 2010, and a molecular-based survey (2011. The DRL and molecular-based survey utilized the 3' end of the RUBISCO large subunit (rbcL-3P to identify genetic species groups (based on 0.1% divergence in rbcL-3P, which were subsequently identified morphologically to allow comparisons to the morphology-based survey. Comparisons were compiled for the year (2011 by site (n = 2 and by season (n = 3. Of the 34 taxa included in the comparisons, 50% of taxa were common to both methods, 35% were unique to the molecular-based survey, and 12% were unique to the morphology-based survey, while the remaining 3% of taxa were unidentified genetic species groups. The morphology-based survey excelled at identifying rare taxa in individual tow subsamples, which were occasionally missed with the molecular approach used here, while the molecular methods (the DRL and molecular-based survey, uncovered nine cryptic species pairs and four previously overlooked species. The last mentioned were typically difficult to identify and were generically assigned to Thalassiosira spp. during the morphology-based survey. Therefore, for now we suggest a combined approach encompassing routine morphology-based surveys accompanied by periodic molecular-based surveys to monitor for cryptic and difficult to identify taxa. As sequencing technologies improve, molecular-based surveys should become routine, leading to a more accurate representation of species composition and richness in monitoring programs.

Sampling procedures for inventory of commercial volume tree species in Amazon Forest.

Science.gov (United States)

Netto, Sylvio P; Pelissari, Allan L; Cysneiros, Vinicius C; Bonazza, Marcelo; Sanquetta, Carlos R

2017-01-01

The spatial distribution of tropical tree species can affect the consistency of the estimators in commercial forest inventories, therefore, appropriate sampling procedures are required to survey species with different spatial patterns in the Amazon Forest. For this, the present study aims to evaluate the conventional sampling procedures and introduce the adaptive cluster sampling for volumetric inventories of Amazonian tree species, considering the hypotheses that the density, the spatial distribution and the zero-plots affect the consistency of the estimators, and that the adaptive cluster sampling allows to obtain more accurate volumetric estimation. We use data from a census carried out in Jamari National Forest, Brazil, where trees with diameters equal to or higher than 40 cm were measured in 1,355 plots. Species with different spatial patterns were selected and sampled with simple random sampling, systematic sampling, linear cluster sampling and adaptive cluster sampling, whereby the accuracy of the volumetric estimation and presence of zero-plots were evaluated. The sampling procedures applied to species were affected by the low density of trees and the large number of zero-plots, wherein the adaptive clusters allowed concentrating the sampling effort in plots with trees and, thus, agglutinating more representative samples to estimate the commercial volume.

Estimation of soil-to-plant transfer factors of radiocesium in 99 wild plant species grown in arable lands 1 year after the Fukushima 1 Nuclear Power Plant accident.

Science.gov (United States)

Yamashita, Jun; Enomoto, Takashi; Yamada, Masao; Ono, Toshiro; Hanafusa, Tadashi; Nagamatsu, Tomohiro; Sonoda, Shoji; Yamamoto, Yoko

2014-01-01

One year after the deposition of radionuclides from the Fukushima 1 Nuclear Power Plant (A formal name is Fukushima Daiichi Nuclear Power Station) in March 2011, radiocesium (¹³⁴Cs, ¹³⁷Cs) concentrations ([Cs]) were comprehensively investigated in the wild plants of 99 species most of which were annual or summer green perennial herbs and started to grow from April 2012 at the heavily contaminated fields of paddy (three study sites) and upland (one study site) in Fukushima Prefecture. The survey was conducted three times (April, July and October) in the year. In each site, soils (soil cores of 5-cm depth) and plants (aerial shoots) were collected for determination of [Cs] on a dry weight basis, and then the transfer factor (TF) of radiocesium from soil to plant ([Cs]plant/[Cs]soil) was estimated in each species. The [Cs] values of both soils and plants largely varied. However, some species exhibited relatively high TF values (more than 0.4) (e.g., Athyrium yokoscense, Dryopteris tokyoensis, and Cyperus brevifolius), while others exhibited almost negligible values (less than 0.01) (e.g., Salix miyabeana, Humulus scandens, and Elymus tsukushiensis). In addition, judging from the 11 species grown in both paddy and upland fields, TF values were generally higher in the paddy fields. The estimation of phytoextraction efficiency of soil radiocesium by weed communities in the paddy fields suggests that the weed community is not a practical candidate for phytoremediation technique.

GONe: Software for estimating effective population size in species with generational overlap

Science.gov (United States)

Coombs, J.A.; Letcher, B.H.; Nislow, K.H.

2012-01-01

GONe is a user-friendly, Windows-based program for estimating effective size (N e) in populations with overlapping generations. It uses the Jorde-Ryman modification to the temporal method to account for age structure in populations. This method requires estimates of age-specific survival and birth rate and allele frequencies measured in two or more consecutive cohorts. Allele frequencies are acquired by reading in genotypic data from files formatted for either GENEPOP or TEMPOFS. For each interval between consecutive cohorts, N e is estimated at each locus and over all loci. Furthermore, N e estimates are output for three different genetic drift estimators (F s, F c and F k). Confidence intervals are derived from a chi-square distribution with degrees of freedom equal to the number of independent alleles. GONe has been validated over a wide range of N e values, and for scenarios where survival and birth rates differ between sexes, sex ratios are unequal and reproductive variances differ. GONe is freely available for download at. ?? 2011 Blackwell Publishing Ltd.

Multi-species genetic connectivity in a terrestrial habitat network.

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Marrotte, Robby R; Bowman, Jeff; Brown, Michael G C; Cordes, Chad; Morris, Kimberley Y; Prentice, Melanie B; Wilson, Paul J

2017-01-01

Habitat fragmentation reduces genetic connectivity for multiple species, yet conservation efforts tend to rely heavily on single-species connectivity estimates to inform land-use planning. Such conservation activities may benefit from multi-species connectivity estimates, which provide a simple and practical means to mitigate the effects of habitat fragmentation for a larger number of species. To test the validity of a multi-species connectivity model, we used neutral microsatellite genetic datasets of Canada lynx ( Lynx canadensis ), American marten ( Martes americana ), fisher ( Pekania pennanti ), and southern flying squirrel ( Glaucomys volans ) to evaluate multi-species genetic connectivity across Ontario, Canada. We used linear models to compare node-based estimates of genetic connectivity for each species to point-based estimates of landscape connectivity (current density) derived from circuit theory. To our knowledge, we are the first to evaluate current density as a measure of genetic connectivity. Our results depended on landscape context: habitat amount was more important than current density in explaining multi-species genetic connectivity in the northern part of our study area, where habitat was abundant and fragmentation was low. In the south however, where fragmentation was prevalent, genetic connectivity was correlated with current density. Contrary to our expectations however, locations with a high probability of movement as reflected by high current density were negatively associated with gene flow. Subsequent analyses of circuit theory outputs showed that high current density was also associated with high effective resistance, underscoring that the presence of pinch points is not necessarily indicative of gene flow. Overall, our study appears to provide support for the hypothesis that landscape pattern is important when habitat amount is low. We also conclude that while current density is proportional to the probability of movement per unit area

Species richness of motile cryptofauna across a gradient of reef framework erosion

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Enochs, I. C.; Manzello, D. P.

2012-09-01

Coral reef ecosystems contain exceptionally high concentrations of marine biodiversity, potentially encompassing millions of species. Similar to tropical rainforests and their insects, the majority of reef animal species are small and cryptic, living in the cracks and crevices of structural taxa (trees and corals). Although the cryptofauna make up the majority of a reef's metazoan biodiversity, we know little about their basic ecology. We sampled motile cryptofaunal communities from both live corals and dead carbonate reef framework across a gradient of increasing erosion on a reef in Pacific Panamá. A total of 289 Operational Taxonomic Units (OTUs) from six phyla were identified. We used species-accumulation models fitted to individual- and sample-based rarefaction curves, as well as seven nonparametric richness estimators to estimate species richness among the different framework types. All procedures predicted the same trends in species richness across the differing framework types. Estimated species richness was higher in dead framework (261-370 OTUs) than in live coral substrates (112-219 OTUs). Surprisingly, richness increased as framework structure was eroded: coral rubble contained the greatest number of species (227-320 OTUs) and the lowest estimated richness of 47-115 OTUs was found in the zone where the reef framework had the greatest vertical relief. This contradicts the paradigm that abundant live coral indicates the apex of reef diversity.

Estimation of vanadium water quality benchmarks for the protection of aquatic life with relevance to the Athabasca Oil Sands region using species sensitivity distributions.

Science.gov (United States)

Schiffer, Stephanie; Liber, Karsten

2017-11-01

Elevated vanadium (V) concentrations in oil sands coke, which is produced and stored on site of some major Athabasca Oil Sands companies, could pose a risk to aquatic ecosystems in northern Alberta, Canada, depending on its future storage and utilization. In the present study, V toxicity was determined in reconstituted Athabasca River water to various freshwater organisms, including 2 midge species (Chironomus dilutus and Chironomus riparius; 4-d and 30-d to 40-d exposures) and 2 freshwater fish species (Oncorhynchus mykiss and Pimephales promelas; 4-d and 28-d exposures) to facilitate estimation of water quality benchmarks. The acute toxicity of V was 52.0 and 63.2 mg/L for C. dilutus and C. riparius, respectively, and 4.0 and 14.8 mg V/L for P. promelas and O. mykiss, respectively. Vanadium exposure significantly impaired adult emergence of C. dilutus and C. riparius at concentrations ≥16.7 (31.6% reduction) and 8.3 (18.0% reduction) mg/L, respectively. Chronic toxicity in fish presented as lethality, with chronic 28-d LC50s of 0.5 and 4.3 mg/L for P. promelas and O. mykiss, respectively. These data were combined with data from the peer-reviewed literature, and separate acute and chronic species sensitivity distributions (SSDs) were constructed. The acute and chronic hazardous concentrations endangering only 5% of species (HC5) were estimated as 0.64 and 0.05 mg V/L, respectively. These new data for V toxicity to aquatic organisms ensure that there are now adequate data available for regulatory agencies to develop appropriate water quality guidelines for use in the Athabasca Oil Sands region and elsewhere. Until then, the HC5 values presented in the present study could serve as interim benchmarks for the protection of aquatic life from exposure to hazardous levels of V in local aquatic environments. Environ Toxicol Chem 2017;36:3034-3044. © 2017 SETAC. © 2017 SETAC.

Species delimitation of the Hyphydrus ovatus complex in western Palaearctic with an update of species distributions (Coleoptera, Dytiscidae

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Johannes Bergsten

2017-06-01

Full Text Available The species status of Hyphydrus anatolicus Guignot, 1957 and H. sanctus Sharp, 1882, previously often confused with the widespread H. ovatus (Linnaeus, 1760, are tested with molecular and morphological characters. Cytochrome c oxidase subunit 1 (CO1 was sequenced for 32 specimens of all three species. Gene-trees were inferred with parsimony, time-free bayesian and strict clock bayesian analyses. The GMYC model was used to estimate species limits. All three species were reciprocally monophyletic with CO1 and highly supported. The GMYC species delimitation analysis unequivocally delimited the three species with no other than the three species solution included in the confidence interval. A likelihood ratio test rejected the one-species null model. Important morphological characters distinguishing the species are provided and illustrated. New distributional data are given for the following species: Hyphydrus anatolicus from Slovakia and Ukraine, and H. aubei Ganglbauer, 1891, and H. sanctus from Turkey.

Influence of Sampling Effort on the Estimated Richness of Road-Killed Vertebrate Wildlife

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Bager, Alex; da Rosa, Clarissa A.

2011-05-01

Road-killed mammals, birds, and reptiles were collected weekly from highways in southern Brazil in 2002 and 2005. The objective was to assess variation in estimates of road-kill impacts on species richness produced by different sampling efforts, and to provide information to aid in the experimental design of future sampling. Richness observed in weekly samples was compared with sampling for different periods. In each period, the list of road-killed species was evaluated based on estimates the community structure derived from weekly samplings, and by the presence of the ten species most subject to road mortality, and also of threatened species. Weekly samples were sufficient only for reptiles and mammals, considered separately. Richness estimated from the biweekly samples was equal to that found in the weekly samples, and gave satisfactory results for sampling the most abundant and threatened species. The ten most affected species showed constant road-mortality rates, independent of sampling interval, and also maintained their dominance structure. Birds required greater sampling effort. When the composition of road-killed species varies seasonally, it is necessary to take biweekly samples for a minimum of one year. Weekly or more-frequent sampling for periods longer than two years is necessary to provide a reliable estimate of total species richness.

Unbiased survival estimates and evidence for skipped breeding opportunities in females

Science.gov (United States)

Muths, Erin L.; Scherer, Rick D.; Lambert, Brad A.

2010-01-01

1. Estimates of demographic parameters for females, in many organisms, are sparse. This is particularly worrisome as more and more species are faced with high extinction probabilities and conservation increasingly depends on actions dictated by complex predictive models that require accurate estimates of demographic parameters for each sex and species.

VOC species and emission inventory from vehicles and their SOA formation potentials estimation in Shanghai, China

Science.gov (United States)

Huang, C.; Wang, H. L.; Li, L.; Wang, Q.; Lu, Q.; de Gouw, J. A.; Zhou, M.; Jing, S. A.; Lu, J.; Chen, C. H.

2015-10-01

Volatile organic compound (VOC) species from vehicle exhausts and gas evaporation were investigated by chassis dynamometer and on-road measurements of nine gasoline vehicles, seven diesel vehicles, five motorcycles, and four gas evaporation samples. The secondary organic aerosol (SOA) mass yields of gasoline, diesel, motorcycle exhausts, and gas evaporation were estimated based on the mixing ratio of measured C2-C12 VOC species and inferred carbon number distributions. High aromatic contents were measured in gasoline exhausts and contributed comparatively more SOA yield. A vehicular emission inventory was compiled based on a local survey of on-road traffic in Shanghai and real-world measurements of vehicle emission factors from previous studies in the cities of China. The inventory-based vehicular organic aerosol (OA) productions to total CO emissions were compared with the observed OA to CO concentrations (ΔOA / ΔCO) in the urban atmosphere. The results indicate that vehicles dominate the primary organic aerosol (POA) emissions and OA production, which contributed about 40 and 60 % of OA mass in the urban atmosphere of Shanghai. Diesel vehicles, which accounted for less than 20 % of vehicle kilometers of travel (VKT), contribute more than 90 % of vehicular POA emissions and 80-90 % of OA mass derived by vehicles in urban Shanghai. Gasoline exhaust could be an important source of SOA formation. Tightening the limit of aromatic content in gasoline fuel will be helpful to reduce its SOA contribution. Intermediate-volatile organic compounds (IVOCs) in vehicle exhausts greatly contribute to SOA formation in the urban atmosphere of China. However, more experiments need to be conducted to determine the contributions of IVOCs to OA pollution in China.

Can genetic estimators provide robust estimates of the effective number of breeders in small populations?

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Marion Hoehn

Full Text Available The effective population size (N(e is proportional to the loss of genetic diversity and the rate of inbreeding, and its accurate estimation is crucial for the monitoring of small populations. Here, we integrate temporal studies of the gecko Oedura reticulata, to compare genetic and demographic estimators of N(e. Because geckos have overlapping generations, our goal was to demographically estimate N(bI, the inbreeding effective number of breeders and to calculate the N(bI/N(a ratio (N(a =number of adults for four populations. Demographically estimated N(bI ranged from 1 to 65 individuals. The mean reduction in the effective number of breeders relative to census size (N(bI/N(a was 0.1 to 1.1. We identified the variance in reproductive success as the most important variable contributing to reduction of this ratio. We used four methods to estimate the genetic based inbreeding effective number of breeders N(bI(gen and the variance effective populations size N(eV(gen estimates from the genotype data. Two of these methods - a temporal moment-based (MBT and a likelihood-based approach (TM3 require at least two samples in time, while the other two were single-sample estimators - the linkage disequilibrium method with bias correction LDNe and the program ONeSAMP. The genetic based estimates were fairly similar across methods and also similar to the demographic estimates excluding those estimates, in which upper confidence interval boundaries were uninformative. For example, LDNe and ONeSAMP estimates ranged from 14-55 and 24-48 individuals, respectively. However, temporal methods suffered from a large variation in confidence intervals and concerns about the prior information. We conclude that the single-sample estimators are an acceptable short-cut to estimate N(bI for species such as geckos and will be of great importance for the monitoring of species in fragmented landscapes.

Phylogenetic diversity and relationships among species of genus ...

African Journals Online (AJOL)

Fifty six Nicotiana species were used to construct phylogenetic trees and to asses the genetic relationships between them. Genetic distances estimated from RAPD analysis was used to construct phylogenetic trees using Phylogenetic Inference Package (PHYLIP). Since phylogenetic relationships estimated for closely ...

Speciation of arsenic in rice and estimation of daily intake of different arsenic species by Brazilians through rice consumption.

Science.gov (United States)

Batista, Bruno L; Souza, Juliana M O; De Souza, Samuel S; Barbosa, Fernando

2011-07-15

Rice is an important source of essential elements. However, rice may also contain toxic elements such as arsenic. Therefore, in the present study, the concentration of total arsenic and five main chemical species of arsenic (As(3+), As(5+), DMA, MMA and AsB) were evaluated in 44 different rice samples (white, parboiled white, brown, parboiled brown, parboiled organic and organic white) from different Brazilian regions using high-performance liquid chromatography hyphenated to inductively coupled plasma mass spectrometry (HPLC-ICP-MS). The mean level of total arsenic was 222.8 ng g(-1) and the daily intake of inorganic arsenic (the most toxic form) from rice consumption was estimated as 10% of the Provisional Tolerable Daily Intake (PTDI) with a daily ingestion of 88 g of rice. Inorganic arsenic (As(3+), As(5+)) and dimethylarsinic acid (DMA) are the predominant forms in all samples. The percentages of species were 38.7; 39.7; 3.7 and 17.8% for DMA, As(3+), MMA and As(5+), respectively. Moreover, rice samples harvested in the state of Rio Grande do Sul presented more fractions of inorganic arsenic than rice in Minas Gerais or Goiás, which could lead to different risks of arsenic exposure. Copyright © 2011 Elsevier B.V. All rights reserved.

Conférence | À quelle distance sommes-nous des Lumières ? | Etienne Klein et François-Xavier Verger | 4 mars

CERN Multimedia

2015-01-01

À quelle distance sommes-nous des Lumières ?, par Etienne Klein et François-Xavier Verger.   Mercredi 4 mars 2015 à 20h30 Globe de la science et de l'innovation Route de Meyrin, 1211 Genève Soirée en français Etienne Klein : L'esprit des Lumières promeut l’autonomie de l’entendement et la primauté de l’esprit scientifique. Il pose également la finalité humaine de nos actes – on ne vise pas Dieu, mais les hommes –, et l’universalité, notamment celle des droits de l’homme. Nous nous considérons volontiers comme les héritiers des Lumières. Mais à quelle distance sommes-nous réellement de leur esprit ? Etienne Klein est physicien, directeur de recherches au CEA et docteur en philosophie des sciences. Il est professeur &a...

Comparison and assessment of aerial and ground estimates of waterbird colonies

Science.gov (United States)

Green, M.C.; Luent, M.C.; Michot, T.C.; Jeske, C.W.; Leberg, P.L.

2008-01-01

Aerial surveys are often used to quantify sizes of waterbird colonies; however, these surveys would benefit from a better understanding of associated biases. We compared estimates of breeding pairs of waterbirds, in colonies across southern Louisiana, USA, made from the ground, fixed-wing aircraft, and a helicopter. We used a marked-subsample method for ground-counting colonies to obtain estimates of error and visibility bias. We made comparisons over 2 sampling periods: 1) surveys conducted on the same colonies using all 3 methods during 3-11 May 2005 and 2) an expanded fixed-wing and ground-survey comparison conducted over 4 periods (May and Jun, 2004-2005). Estimates from fixed-wing aircraft were approximately 65% higher than those from ground counts for overall estimated number of breeding pairs and for both dark and white-plumaged species. The coefficient of determination between estimates based on ground and fixed-wing aircraft was ???0.40 for most species, and based on the assumption that estimates from the ground were closer to the true count, fixed-wing aerial surveys appeared to overestimate numbers of nesting birds of some species; this bias often increased with the size of the colony. Unlike estimates from fixed-wing aircraft, numbers of nesting pairs made from ground and helicopter surveys were very similar for all species we observed. Ground counts by one observer resulted in underestimated number of breeding pairs by 20% on average. The marked-subsample method provided an estimate of the number of missed nests as well as an estimate of precision. These estimates represent a major advantage of marked-subsample ground counts over aerial methods; however, ground counts are difficult in large or remote colonies. Helicopter surveys and ground counts provide less biased, more precise estimates of breeding pairs than do surveys made from fixed-wing aircraft. We recommend managers employ ground counts using double observers for surveying waterbird colonies

Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae.

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Justin C Bagley

Full Text Available Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve biodiversity. However, species delimitation is problematic in many taxa, including 'non-adaptive radiations' containing morphologically cryptic lineages. Fortunately, coalescent-based species delimitation methods hold promise for objectively estimating species limits in such radiations, using multilocus genetic data. Using coalescent-based approaches, we delimit species and infer evolutionary relationships in a morphologically conserved group of Central American freshwater fishes, the Poecilia sphenops species complex. Phylogenetic analyses of multiple genetic markers (sequences of two mitochondrial DNA genes and five nuclear loci from 10/15 species and genetic lineages recognized in the group support the P. sphenops species complex as monophyletic with respect to outgroups, with eight mitochondrial 'major-lineages' diverged by ≥2% pairwise genetic distances. From general mixed Yule-coalescent models, we discovered (conservatively 10 species within our concatenated mitochondrial DNA dataset, 9 of which were strongly supported by subsequent multilocus Bayesian species delimitation and species tree analyses. Results suggested species-level diversity is underestimated or overestimated by at least ~15% in different lineages in the complex. Nonparametric statistics and coalescent simulations indicate genealogical discordance among our gene tree results has mainly derived from interspecific hybridization in the nuclear genome. However, mitochondrial DNA show little evidence for introgression, and our species delimitation results appear robust to effects of this process. Overall, our findings support the utility of combining multiple lines of genetic evidence and broad phylogeographical sampling to discover and validate species using coalescent-based methods. Our study also highlights the

Estimating exposure of terrestrial wildlife to contaminants

Energy Technology Data Exchange (ETDEWEB)

Sample, B.E.; Suter, G.W. II

1994-09-01

This report describes generalized models for the estimation of contaminant exposure experienced by wildlife on the Oak Ridge Reservation. The primary exposure pathway considered is oral ingestion, e.g. the consumption of contaminated food, water, or soil. Exposure through dermal absorption and inhalation are special cases and are not considered hereIN. Because wildlife mobile and generally consume diverse diets and because environmental contamination is not spatial homogeneous, factors to account for variation in diet, movement, and contaminant distribution have been incorporated into the models. To facilitate the use and application of the models, life history parameters necessary to estimate exposure are summarized for 15 common wildlife species. Finally, to display the application of the models, exposure estimates were calculated for four species using data from a source operable unit on the Oak Ridge Reservation.

Estimating exposure of terrestrial wildlife to contaminants

International Nuclear Information System (INIS)

Sample, B.E.; Suter, G.W. II.

1994-09-01

This report describes generalized models for the estimation of contaminant exposure experienced by wildlife on the Oak Ridge Reservation. The primary exposure pathway considered is oral ingestion, e.g. the consumption of contaminated food, water, or soil. Exposure through dermal absorption and inhalation are special cases and are not considered hereIN. Because wildlife mobile and generally consume diverse diets and because environmental contamination is not spatial homogeneous, factors to account for variation in diet, movement, and contaminant distribution have been incorporated into the models. To facilitate the use and application of the models, life history parameters necessary to estimate exposure are summarized for 15 common wildlife species. Finally, to display the application of the models, exposure estimates were calculated for four species using data from a source operable unit on the Oak Ridge Reservation

Acute toxicity prediction to threatened and endangered species using Interspecies Correlation Estimation (ICE) models

Science.gov (United States)

Evaluating contaminant sensitivity of threatened and endangered (listed) species and protectiveness of chemical regulations often depends on toxicity data for commonly tested surrogate species. The U.S. EPA’s Internet application Web-ICE is a suite of Interspecies Correlati...

Determinants of IL-6 levels during HIV infection

DEFF Research Database (Denmark)

Borges, Alvaro H; O'Connor, Jemma L; Phillips, Andrew N

2014-01-01

. MATERIAL AND METHODS: Participants in three international HIV trials (SMART, ESPRIT and SILCAAT) with IL-6 plasma levels measured at baseline were included (N=9864). Factors independently associated with log2-transformed IL-6 level were identified by multivariate linear regression; exponentiated estimates......INTRODUCTION: Elevated IL-6 levels have been linked to increased risk of cardiovascular disease (CVD), cancer and death. Compared to the general population, treated HIV+ persons have 50-100% higher IL-6 levels, but few data on the determinants of IL-6 levels during HIV infection currently exist...

Algorithmic approaches to aid species' delimitation in multidimensional morphospace

Directory of Open Access Journals (Sweden)

Pearson Paul N

2010-06-01

Full Text Available Abstract Background The species is a fundamental unit of biological pattern and process, but its delimitation has proven a ready source of argument and disagreement. Here, we discuss four key steps that utilize statistical thresholds to describe the morphological variability within a sample and hence assess whether there is evidence for one or multiple species. Once the initial set of biologically relevant traits on comparable individuals has been identified, there is no need for the investigator to hypothesise how specimens might be divided among groups, nor the traits on which groups might be separated. Results Principal components are obtained using robust covariance estimates and retained only if they exceed threshold amounts of explanatory power, before model-based clustering is performed on the dimension-reduced space. We apply these steps in an attempt to resolve ongoing debates among taxonomists working on the extinct Eocene planktonic foraminifera Turborotalia, providing statistical evidence for two species shortly before the lineage's extinction near the Eocene/Oligocene boundary. Conclusion By estimating variance robustly (samples containing incipient species are unlikely to be scaled optimally by means and standard deviations and identifying thresholds relevant to a particular system rather than universal standards, the steps of the framework aim to optimize the chances of delineation without imposing pre-conceived patterns onto estimates of species limits.

Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism.

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Davies, T Jonathan; Kraft, Nathan J B; Salamin, Nicolas; Wolkovich, Elizabeth M

2012-02-01

The tendency for more closely related species to share similar traits and ecological strategies can be explained by their longer shared evolutionary histories and represents phylogenetic conservatism. How strongly species traits co-vary with phylogeny can significantly impact how we analyze cross-species data and can influence our interpretation of assembly rules in the rapidly expanding field of community phylogenetics. Phylogenetic conservatism is typically quantified by analyzing the distribution of species values on the phylogenetic tree that connects them. Many phylogenetic approaches, however, assume a completely sampled phylogeny: while we have good estimates of deeper phylogenetic relationships for many species-rich groups, such as birds and flowering plants, we often lack information on more recent interspecific relationships (i.e., within a genus). A common solution has been to represent these relationships as polytomies on trees using taxonomy as a guide. Here we show that such trees can dramatically inflate estimates of phylogenetic conservatism quantified using S. P. Blomberg et al.'s K statistic. Using simulations, we show that even randomly generated traits can appear to be phylogenetically conserved on poorly resolved trees. We provide a simple rarefaction-based solution that can reliably retrieve unbiased estimates of K, and we illustrate our method using data on first flowering times from Thoreau's woods (Concord, Massachusetts, USA).

Using the Species-Area Relationship to Set Baseline Targets for Conservation

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Philip Desmet

2004-12-01

Full Text Available This paper demonstrates how the power form of the Species-Area Relationship (SAR can be used to set conservation targets for land classes using biodiversity survey data. The log-transformation of the power model is a straight line; therefore, if one knows the average number of species recorded per survey site and can estimate the true species number present in the land class, using EstimateS software, it is possible to calculate the slope of the curve, or z-value. The z-value is the exponent in the power model and it can then be used to estimate the proportion of area required to represent a given proportion of species present in any land class. This application of the SAR is explored using phytosociological relevé data from South Africa's Succulent Karoo biome. We also provide suggestions for extrapolating the estimated z-values to other land classes within a bioregion that lack sufficient survey data, using the relationship between z-values and remotely determined landscape variables such as habitat diversity (topographic diversity and geographic location (latitude and longitude. The SAR predicts that for most Succulent Karoo vegetation types a conservation target of 10% of the land area would not be sufficient to conserve the majority of species. We also demonstrate that not all land classes are equal from a plant biodiversity perspective, so applying one target to all land classes in a region will lead to significant gaps and inefficiencies in any reserve network based on this universal target.

Estimating mangrove in Florida: trials monitoring rare ecosystems

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Mark J. Brown

2015-01-01

Mangrove species are keystone components in coastal ecosystems and are the interface between forest land and sea. Yet, estimates of their area have varied widely. Forest Inventory and Analysis (FIA) data from ground-based sample plots provide one estimate of the resource. Initial FIA estimates of the mangrove resource in Florida varied dramatically from those compiled...

The fossilized birth–death process for coherent calibration of divergence-time estimates

Science.gov (United States)

Heath, Tracy A.; Huelsenbeck, John P.; Stadler, Tanja

2014-01-01

Time-calibrated species phylogenies are critical for addressing a wide range of questions in evolutionary biology, such as those that elucidate historical biogeography or uncover patterns of coevolution and diversification. Because molecular sequence data are not informative on absolute time, external data—most commonly, fossil age estimates—are required to calibrate estimates of species divergence dates. For Bayesian divergence time methods, the common practice for calibration using fossil information involves placing arbitrarily chosen parametric distributions on internal nodes, often disregarding most of the information in the fossil record. We introduce the “fossilized birth–death” (FBD) process—a model for calibrating divergence time estimates in a Bayesian framework, explicitly acknowledging that extant species and fossils are part of the same macroevolutionary process. Under this model, absolute node age estimates are calibrated by a single diversification model and arbitrary calibration densities are not necessary. Moreover, the FBD model allows for inclusion of all available fossils. We performed analyses of simulated data and show that node age estimation under the FBD model results in robust and accurate estimates of species divergence times with realistic measures of statistical uncertainty, overcoming major limitations of standard divergence time estimation methods. We used this model to estimate the speciation times for a dataset composed of all living bears, indicating that the genus Ursus diversified in the Late Miocene to Middle Pliocene. PMID:25009181

An improved nonparametric lower bound of species richness via a modified good-turing frequency formula.

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Chiu, Chun-Huo; Wang, Yi-Ting; Walther, Bruno A; Chao, Anne

2014-09-01

It is difficult to accurately estimate species richness if there are many almost undetectable species in a hyper-diverse community. Practically, an accurate lower bound for species richness is preferable to an inaccurate point estimator. The traditional nonparametric lower bound developed by Chao (1984, Scandinavian Journal of Statistics 11, 265-270) for individual-based abundance data uses only the information on the rarest species (the numbers of singletons and doubletons) to estimate the number of undetected species in samples. Applying a modified Good-Turing frequency formula, we derive an approximate formula for the first-order bias of this traditional lower bound. The approximate bias is estimated by using additional information (namely, the numbers of tripletons and quadrupletons). This approximate bias can be corrected, and an improved lower bound is thus obtained. The proposed lower bound is nonparametric in the sense that it is universally valid for any species abundance distribution. A similar type of improved lower bound can be derived for incidence data. We test our proposed lower bounds on simulated data sets generated from various species abundance models. Simulation results show that the proposed lower bounds always reduce bias over the traditional lower bounds and improve accuracy (as measured by mean squared error) when the heterogeneity of species abundances is relatively high. We also apply the proposed new lower bounds to real data for illustration and for comparisons with previously developed estimators. © 2014, The International Biometric Society.

A method of estimating log weights.

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Charles N. Mann; Hilton H. Lysons

1972-01-01

This paper presents a practical method of estimating the weights of logs before they are yarded. Knowledge of log weights is required to achieve optimum loading of modern yarding equipment. Truckloads of logs are weighed and measured to obtain a local density index (pounds per cubic foot) for a species of logs. The density index is then used to estimate the weights of...

Comparison of one-year outcomes following coronary artery stenting in diabetic versus nondiabetic patients (from the Enhanced Suppression of the Platelet IIb/IIIa Receptor With Integrilin Therapy [ESPRIT] Trial).

Science.gov (United States)

Labinaz, Marino; Madan, Mina; O'Shea, J O'Conor; Kilaru, Rakhi; Chin, Wai; Pieper, Karen; McGuire, Darren K; Saucedo, Jorge F; Talley, J David; Lui, Henry; Kitt, Michael M; Califf, Robert M; Tcheng, James T

2002-09-15

For patients undergoing nonurgent coronary stent implantation, blockade of the glycoprotein IIb/IIIa receptor with eptifibatide reduces the incidence of ischemic complications. We evaluated the interaction of eptifibatide with diabetes in patients who underwent this procedure by analyzing the 1-year outcomes of those enrolled in the Enhanced Suppression of the Platelet IIb/IIIa Receptor with Integrilin Therapy (ESPRIT) trial (466 diabetic and 1,595 nondiabetic patients). At 1 year, the composite end point of death, myocardial infarction (MI), or target vessel revascuarlization (TVR) was higher in diabetic patients (24.5% vs 18.4%; p = 0.008). At 1 year, eptifibatide had a similar effect on the composite end point of death, MI, or TVR in diabetic (hazards ratio [HR] 0.71, 95% confidence interval [CI] 0.49 to 1.04) and nondiabetic patients (HR 0.80, 95% CI 0.63 to 0.99). A similar treatment effect was also seen on death or MI in both groups. The 1-year mortality rate for diabetic patients assigned to placebo was 3.5% versus 1.3% for patients receiving eptifibatide (HR 0.37, 95% CI 0.10 to 1.41); the latter rate was similar to the mortality rate of 1.4% for nondiabetic patients in the eptifibatide group. However, eptifibatide did not have a significant effect on TVR in diabetic patients (HR 0.90, 95% CI 0.57 to 1.41). Our data suggest that treatment with eptifibatide is associated with a similar relative reduction in adverse ischemic complications in diabetic and nondiabetic patients undergoing coronary stent implantation. There is no evidence of a statistical interaction in the treatment effect of eptifibatide between patients with and without diabetes.

Risk assessment for invasive species produces net bioeconomic benefits.

Science.gov (United States)

Keller, Reuben P; Lodge, David M; Finnoff, David C

2007-01-02

International commerce in live organisms presents a policy challenge for trade globalization; sales of live organisms create wealth, but some nonindigenous species cause harm. To reduce damage, some countries have implemented species screening to limit the introduction of damaging species. Adoption of new risk assessment (RA) technologies has been slowed, however, by concerns that RA accuracy remains insufficient to produce positive net economic benefits. This concern arises because only a small proportion of all introduced species escape, spread, and cause harm (i.e., become invasive), so a RA will exclude many noninvasive species (which provide a net economic benefit) for every invasive species correctly identified. Here, we develop a simple cost:benefit bioeconomic framework to quantify the net benefits from applying species prescreening. Because invasive species are rarely eradicated, and their damages must therefore be borne for long periods, we have projected the value of RA over a suitable range of policy time horizons (10-500 years). We apply the model to the Australian plant quarantine program and show that this RA program produces positive net economic benefits over the range of reasonable assumptions. Because we use low estimates of the financial damage caused by invasive species and high estimates of the value of species in the ornamental trade, our results underestimate the net benefit of the Australian plant quarantine program. In addition, because plants have relatively low rates of invasion, applying screening protocols to animals would likely demonstrate even greater benefits.

The species velocity of trees in Alaska

Science.gov (United States)

Morrison, B. D.; Napier, J.; de Lafontaine, G.; Heath, K.; Li, B.; Hu, F.; Greenberg, J. A.

2017-12-01

Anthropogenic climate change has motivated interest in the paleo record to enhance our knowledge about past vegetation responses to climate change and help understand potential responses in the future. Additionally, polar regions currently experience the most rapid rates of climate change globally, prompting concern over changes in the ecological composition of high latitude ecosystems. Recent analyses have attempted to construct methods to estimate a species' ability to track climate change by computing climate velocity; a measure of the rate of climate displacement across a landscape which may indicate the speed an organism must migrate to keep pace with climate change. However, a challenge to using climate velocity in understanding range shifts is a lack of species-specificity in the velocity calculations: climate velocity does not actually use any species data in its analysis. To solve the shortcomings of climate velocity in estimating species displacement rates, we computed the "species velocity" of white spruce, green and grey alder populations across the state of Alaska from the Last Glacial Maximum (LGM) to today. Species velocity represents the rate and direction a species is required to migrate to keep pace with a changing climate following the LGM. We used a species distribution model to determine past and present white spruce and alder distributions using statistically downscaled climate data at 60m. Species velocity was then derived from the change in species distribution per year by the change in distribution over Alaska (km/yr). High velocities indicate locations where the species environmental envelope is changing drastically and must disperse rapidly to survive climate change. As a result, high velocity regions are more vulnerable to distribution shifts and higher risk of local extinction. Conversely, low species velocities indicate locations where the local climate envelope is shifting relatively slowly, reducing the stress to disperse quickly

Indicator Species Population Monitoring in Antarctica with Uav

Science.gov (United States)

Zmarz, A.; Korczak-Abshire, M.; Storvold, R.; Rodzewicz, M.; Kędzierska, I.

2015-08-01

A program to monitor bird and pinniped species in the vicinity of Arctowski Station, King George Island, South Shetlands, Antarctica, has been conducted over the past 38 years. Annual monitoring of these indicator species includes estimations of breeding population sizes of three Pygoscelis penguin species: Adélie, gentoo and chinstrap. Six penguin colonies situated on the western shores of two bays: Admiralty and King George are investigated. To study changes in penguin populations Unmanned Aerial Vehicles were used for the first time in the 2014/15 austral summer season. During photogrammetric flights the high-resolution images of eight penguin breeding colonies were taken. Obtained high resolution images were used for estimation of breeding population size and compared with the results of measurements taken at the same time from the ground. During this Antarctic expedition eight successful photogrammetry missions (total distance 1500 km) were performed. Images were taken with digital SLR Canon 700D, Nikon D5300, Nikon D5100 with a 35mm objective lens. Flights altitude at 350 - 400 AGL, allowed images to be taken with a resolution GSD (ground sample distance) less than 5 cm. The Image J software analysis method was tested to provide automatic population estimates from obtained images. The use of UAV for monitoring of indicator species, enabled data acquisition from areas inaccessible by ground methods.

INDICATOR SPECIES POPULATION MONITORING IN ANTARCTICA WITH UAV

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A. Zmarz

2015-08-01

Full Text Available A program to monitor bird and pinniped species in the vicinity of Arctowski Station, King George Island, South Shetlands, Antarctica, has been conducted over the past 38 years. Annual monitoring of these indicator species includes estimations of breeding population sizes of three Pygoscelis penguin species: Adélie, gentoo and chinstrap. Six penguin colonies situated on the western shores of two bays: Admiralty and King George are investigated. To study changes in penguin populations Unmanned Aerial Vehicles were used for the first time in the 2014/15 austral summer season. During photogrammetric flights the high-resolution images of eight penguin breeding colonies were taken. Obtained high resolution images were used for estimation of breeding population size and compared with the results of measurements taken at the same time from the ground. During this Antarctic expedition eight successful photogrammetry missions (total distance 1500 km were performed. Images were taken with digital SLR Canon 700D, Nikon D5300, Nikon D5100 with a 35mm objective lens. Flights altitude at 350 – 400 AGL, allowed images to be taken with a resolution GSD (ground sample distance less than 5 cm. The Image J software analysis method was tested to provide automatic population estimates from obtained images. The use of UAV for monitoring of indicator species, enabled data acquisition from areas inaccessible by ground methods.

Can Airborne Laser Scanning (ALS and Forest Estimates Derived from Satellite Images Be Used to Predict Abundance and Species Richness of Birds and Beetles in Boreal Forest?

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Eva Lindberg

2015-04-01

Full Text Available In managed landscapes, conservation planning requires effective methods to identify high-biodiversity areas. The objective of this study was to evaluate the potential of airborne laser scanning (ALS and forest estimates derived from satellite images extracted at two spatial scales for predicting the stand-scale abundance and species richness of birds and beetles in a managed boreal forest landscape. Multiple regression models based on forest data from a 50-m radius (i.e., corresponding to a homogenous forest stand had better explanatory power than those based on a 200-m radius (i.e., including also parts of adjacent stands. Bird abundance and species richness were best explained by the ALS variables “maximum vegetation height” and “vegetation cover between 0.5 and 3 m” (both positive. Flying beetle abundance and species richness, as well as epigaeic (i.e., ground-living beetle richness were best explained by a model including the ALS variable “maximum vegetation height” (positive and the satellite-derived variable “proportion of pine” (negative. Epigaeic beetle abundance was best explained by “maximum vegetation height” at 50 m (positive and “stem volume” at 200 m (positive. Our results show that forest estimates derived from satellite images and ALS data provide complementary information for explaining forest biodiversity patterns. We conclude that these types of remote sensing data may provide an efficient tool for conservation planning in managed boreal landscapes.

Estimating the snake species richness of the Santubong Peninsula (Borneo) in two different ways

NARCIS (Netherlands)

Rooijen, van J.

2009-01-01

The distribution of Borneo’s species across the island is far from well-known. This is particularly true for snakes which are hard to find. Given the current rate of habitat destruction and consequent need for conservation strategies, more information is required as to the species composition and

Reconciliation with non-binary species trees.

Science.gov (United States)

Vernot, Benjamin; Stolzer, Maureen; Goldman, Aiton; Durand, Dannie

2008-10-01

Reconciliation extracts information from the topological incongruence between gene and species trees to infer duplications and losses in the history of a gene family. The inferred duplication-loss histories provide valuable information for a broad range of biological applications, including ortholog identification, estimating gene duplication times, and rooting and correcting gene trees. While reconciliation for binary trees is a tractable and well studied problem, there are no algorithms for reconciliation with non-binary species trees. Yet a striking proportion of species trees are non-binary. For example, 64% of branch points in the NCBI taxonomy have three or more children. When applied to non-binary species trees, current algorithms overestimate the number of duplications because they cannot distinguish between duplication and incomplete lineage sorting. We present the first algorithms for reconciling binary gene trees with non-binary species trees under a duplication-loss parsimony model. Our algorithms utilize an efficient mapping from gene to species trees to infer the minimum number of duplications in O(|V(G) | x (k(S) + h(S))) time, where |V(G)| is the number of nodes in the gene tree, h(S) is the height of the species tree and k(S) is the size of its largest polytomy. We present a dynamic programming algorithm which also minimizes the total number of losses. Although this algorithm is exponential in the size of the largest polytomy, it performs well in practice for polytomies with outdegree of 12 or less. We also present a heuristic which estimates the minimal number of losses in polynomial time. In empirical tests, this algorithm finds an optimal loss history 99% of the time. Our algorithms have been implemented in NOTUNG, a robust, production quality, tree-fitting program, which provides a graphical user interface for exploratory analysis and also supports automated, high-throughput analysis of large data sets.

Vegetation Parameter Extraction Using Dual Baseline Polarimetric SAR Interferometry Data

Science.gov (United States)

Zhang, H.; Wang, C.; Chen, X.; Tang, Y.

2009-04-01

For vegetation parameter inversion, the single baseline polarimetric SAR interferometry (POLinSAR) technique, such as the three-stage method and the ESPRIT algorithm, is limited by the observed data with the minimum ground to volume amplitude ration, which effects the estimation of the effective phase center for the vegetation canopy or the surface, and thus results in the underestimated vegetation height. In order to remove this effect of the single baseline inversion techniques in some extend, another baseline POLinSAR data is added on vegetation parameter estimation in this paper, and a dual baseline POLinSAR technique for the extraction of the vegetation parameter is investigated and improved to reduce the dynamic bias for the vegetation parameter estimation. Finally, the simulated data and real data are used to validate this dual baseline technique.

Importance of tree basic density in biomass estimation and associated uncertainties

DEFF Research Database (Denmark)

Njana, Marco Andrew; Meilby, Henrik; Eid, Tron

2016-01-01

Key message Aboveground and belowground tree basic densities varied between and within the three mangrove species. If appropriately determined and applied, basic density may be useful in estimation of tree biomass. Predictive accuracy of the common (i.e. multi-species) models including aboveground...... of sustainable forest management, conservation and enhancement of carbon stocks (REDD+) initiatives offer an opportunity for sustainable management of forests including mangroves. In carbon accounting for REDD+, it is required that carbon estimates prepared for monitoring reporting and verification schemes...... and examine uncertainties in estimation of tree biomass using indirect methods. Methods This study focused on three dominant mangrove species (Avicennia marina (Forssk.) Vierh, Sonneratia alba J. Smith and Rhizophora mucronata Lam.) in Tanzania. A total of 120 trees were destructively sampled for aboveground...

Spark ignition engine control: estimation and prediction of the in-cylinder mass and chemical species; Controle moteur a allumage commande: estimation / prediction de la masse et de la composition du melange enferme dans le cylindre

Energy Technology Data Exchange (ETDEWEB)

Giansetti, P.

2005-09-15

Spark ignition engine control has become a major issue regarding compliance with emissions legislation while ensuring driving comfort. The objective of this thesis was to estimate the mass and composition of gases inside the cylinder of an engine based on physics in order to insure better control of transient phases taking into account residual gases as well as exhaust gas recirculation. Residual gas fraction has been characterized using two experiments and one CFD code. A model has been validated experimentally and integrated into an observer which predicts pressure and temperature inside the manifold. The predictions of the different gas flows and the chemical species inside the cylinder are deduced. A closed loop observer has been validated experimentally and in simulation. Moreover, an algorithm estimating the fresh and burned gas mass from the cylinder pressure has been proposed in order to obtain the information cycle by cycle and cylinder by cylinder. (author)

Apparent survival rates of forest birds in eastern Ecuador revisited: improvement in precision but no change in estimates.

Directory of Open Access Journals (Sweden)

John G Blake

Full Text Available Knowledge of survival rates of Neotropical landbirds remains limited, with estimates of apparent survival available from relatively few sites and species. Previously, capture-mark-recapture models were used to estimate apparent survival of 31 species (30 passerines, 1 Trochilidae from eastern Ecuador based on data collected from 2001 to 2006. Here, estimates are updated with data from 2001-2012 to determine how additional years of data affect estimates; estimates for six additional species are provided. Models assuming constant survival had highest support for 19 of 31 species when based on 12 years of data compared to 27 when based on six; models incorporating effects of transients had the highest support for 12 of 31 species compared to four when based on 12 and six years, respectively. Average apparent survival based on the most highly-supported model (based on model averaging, when appropriate was 0.59 (± 0.02 SE across 30 species of passerines when based on 12 years and 0.57 (± 0.02 when based on six. Standard errors of survival estimates based on 12 years were approximately half those based on six years. Of 31 species in both data sets, estimates of apparent survival were somewhat lower for 13, somewhat higher for 17, and remained unchanged for one; confidence intervals for estimates based on six and 12 years of data overlapped for all species. Results indicate that estimates of apparent survival are comparable but more precise when based on longer-term data sets; standard error of the estimates was negatively correlated with numbers of captures (rs  = -0.72 and recaptures (rs  = -0.93, P<0.001 in both cases. Thus, reasonable estimates of apparent survival may be obtained with relatively few years of data if sample sizes are sufficient.

Comparing fishers' and scientific estimates of size at maturity and maximum body size as indicators for overfishing.

Science.gov (United States)

Mclean, Elizabeth L; Forrester, Graham E

2018-04-01

We tested whether fishers' local ecological knowledge (LEK) of two fish life-history parameters, size at maturity (SAM) at maximum body size (MS), was comparable to scientific estimates (SEK) of the same parameters, and whether LEK influenced fishers' perceptions of sustainability. Local ecological knowledge was documented for 82 fishers from a small-scale fishery in Samaná Bay, Dominican Republic, whereas SEK was compiled from the scientific literature. Size at maturity estimates derived from LEK and SEK overlapped for most of the 15 commonly harvested species (10 of 15). In contrast, fishers' maximum size estimates were usually lower than (eight species), or overlapped with (five species) scientific estimates. Fishers' size-based estimates of catch composition indicate greater potential for overfishing than estimates based on SEK. Fishers' estimates of size at capture relative to size at maturity suggest routine inclusion of juveniles in the catch (9 of 15 species), and fishers' estimates suggest that harvested fish are substantially smaller than maximum body size for most species (11 of 15 species). Scientific estimates also suggest that harvested fish are generally smaller than maximum body size (13 of 15), but suggest that the catch is dominated by adults for most species (9 of 15 species), and that juveniles are present in the catch for fewer species (6 of 15). Most Samaná fishers characterized the current state of their fishery as poor (73%) and as having changed for the worse over the past 20 yr (60%). Fishers stated that concern about overfishing, catching small fish, and catching immature fish contributed to these perceptions, indicating a possible influence of catch-size composition on their perceptions. Future work should test this link more explicitly because we found no evidence that the minority of fishers with more positive perceptions of their fishery reported systematically different estimates of catch-size composition than those with the more

Can rarefaction be used to estimate song repertoire size in birds?

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Kathleen R. PESHEK, Daniel T. BLUMSTEIN

2011-06-01

Full Text Available Song repertoire size is the number of distinct syllables, phrases, or song types produced by an individual or population. Repertoire size estimation is particularly difficult for species that produce highly variable songs and those that produce many song types. Estimating repertoire size is important for ecological and evolutionary studies of speciation, studies of sexual selection, as well as studies of how species may adapt their songs to various acoustic environments. There are several methods to estimate repertoire size, however prior studies discovered that all but a full numerical count of song types might have substantial inaccuracies associated with them. We evaluated a somewhat novel approach to estimate repertoire size—rarefaction; a technique ecologists use to measure species diversity on individual and population levels. Using the syllables within American robins’ Turdus migratorius repertoire, we compared the most commonly used techniques of estimating repertoires to the results of a rarefaction analysis. American robins have elaborate and unique songs with few syllables shared between individuals, and there is no evidence that robins mimic their neighbors. Thus, they are an ideal system in which to compare techniques. We found that the rarefaction technique results resembled that of the numerical count, and were better than two alternative methods (behavioral accumulation curves, and capture-recapture to estimate syllable repertoire size. Future estimates of repertoire size, particularly in vocally complex species, may benefit from using rarefaction techniques when numerical counts are unable to be performed [Current Zoology 57 (3: 300–306, 2011].

Fort Collins Science Center: Invasive Species Science

Science.gov (United States)

Stohlgren, Tom

2004-01-01

Invasive, non-native species of plants, animals, and disease organisms adversely affect the ecosystems they enter. Like "biological wildfires," they can quickly spread, and they affect nearly all terrestrial and aquatic ecosystems. Invasive species have become the greatest environmental challenge of the 21st century in terms of economic, environmental, and human health costs, with an estimated impact in the U.S. of over $138 billion per year. Managers of Department of the Interior and other public and private lands and waters rank invasive species as their top resource management problem.

Energy values and estimation of power generation potentials of some non-woody biomass species

Energy Technology Data Exchange (ETDEWEB)

Kumar, M; Patel, S K [National Institute of Technology, Rourkela (India)

2008-07-01

In view of high energy potentials in non-woody biomass species and an increasing interest in their utilization for power generation, an attempt has been made in this study to assess the proximate analysis and energy content of different components of Ocimum canum and Tridax procumbens biomass species (both non-woody), and their impact on power generation and land requirement for energy plantations. The net energy content in Ocimum canum was found to be slightly higher than that in Tridax procumbens. In spite of having higher ash contents, the barks from both the plant species exhibited higher calorific values. The results have shown that approximately 650 and 1,270 hectares of land are required to generate 20,000 kWh/day electricity from Ocimum canum and Tridax procumbens biomass species. Coal samples, obtained from six different local mines, were also examined for their qualities, and the results were compared with those of studied biomass materials. This comparison reveals much higher power output with negligible emission of suspended particulate matters (SPM) from biomass materials.

Estimates of soil ingestion by wildlife

Science.gov (United States)

Beyer, W.N.; Connor, E.E.; Gerould, S.

1994-01-01

Many wildlife species ingest soil while feeding, but ingestion rates are known for only a few species. Knowing ingestion rates may be important for studies of environmental contaminants. Wildlife may ingest soil deliberately, or incidentally, when they ingest soil-laden forage or animals that contain soil. We fed white-footed mice (Peromyscus leucopus) diets containing 0-15% soil to relate the dietary soil content to the acid-insoluble ash content of scat collected from the mice. The relation was described by an equation that required estimates of the percent acid-insoluble ash content of the diet, digestibility of the diet, and mineral content of soil. We collected scat from 28 wildlife species by capturing animals, searching appropriate habitats for scat, or removing material from the intestines of animals collected for other purposes. We measured the acid-insoluble ash content of the scat and estimated the soil content of the diets by using the soil-ingestion equation. Soil ingestion estimates should be considered only approximate because they depend on estimated rather than measured digestibility values and because animals collected from local populations at one time of the year may not represent the species as a whole. Sandpipers (Calidris spp.), which probe or peck for invertebrates in mud or shallow water, consumed sediments at a rate of 7-30% of their diets. Nine-banded armadillo (Dasypus novemcinctus, soil = 17% of diet), American woodcock (Scolopax minor, 10%), and raccoon (Procyon lotor, 9%) had high rates of soil ingestion, presumably because they ate soil organisms. Bison (Bison bison, 7%), black-tailed prairie dog (Cynomys ludovicianus, 8%), and Canada geese (Branta canadensis, 8%) consumed soil at the highest rates among the herbivores studied, and various browsers studied consumed little soil. Box turtle (Terrapene carolina, 4%), opossum (Didelphis virginiana, 5%), red fox (Vulpes vulpes, 3%), and wild turkey (Meleagris gallopavo, 9%) consumed soil

Estimates of Avian Mortality Attributed to Vehicle Collisions in Canada

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Christine A. Bishop

2013-12-01

Full Text Available Although mortality of birds from collisions with vehicles is estimated to be in the millions in the USA, Europe, and the UK, to date, no estimates exist for Canada. To address this, we calculated an estimate of annual avian mortality attributed to vehicular collisions during the breeding and fledging season, in Canadian ecozones, by applying North American literature values for avian mortality to Canadian road networks. Because owls are particularly susceptible to collisions with vehicles, we also estimated the number of roadkilled Barn owls (Tyto alba in its last remaining range within Canada. (This species is on the IUCN red list and is also listed federally as threatened; Committee on the Status of Endangered Wildlife in Canada 2010, International Union for the Conservation of Nature 2012. Through seven Canadian studies in existence, 80 species and 2,834 specimens have been found dead on roads representing species from 14 orders of birds. On Canadian 1 and 2-lane paved roads outside of major urban centers, the unadjusted number of bird mortalities/yr during an estimated 4-mo (122-d breeding and fledging season for most birds in Canada was 4,650,137 on roads traversing through deciduous, coniferous, cropland, wetlands and nonagricultural landscapes with less than 10% treed area. On average, this represents 1,167 birds killed/100 km in Canada. Adjusted for scavenging, this estimate was 13,810,906 (3,462 dead birds/100 km. For barn owls, the unadjusted number of birds killed annually on 4-lane roads during the breeding and fledging season, within the species geographic range in southern British Columbia, was estimated as 244 owls and, when adjusted for scavenging and observer bias (3.6 factor, the total was 851 owls.

Seasonal species interactions minimize the impact of species turnover on the likelihood of community persistence.

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Saavedra, Serguei; Rohr, Rudolf P; Fortuna, Miguel A; Selva, Nuria; Bascompte, Jordi

2016-04-01

Many of the observed species interactions embedded in ecological communities are not permanent, but are characterized by temporal changes that are observed along with abiotic and biotic variations. While work has been done describing and quantifying these changes, little is known about their consequences for species coexistence. Here, we investigate the extent to which changes of species composition impact the likelihood of persistence of the predator-prey community in the highly seasonal Białowieza Primeval Forest (northeast Poland), and the extent to which seasonal changes of species interactions (predator diet) modulate the expected impact. This likelihood is estimated extending recent developments on the study of structural stability in ecological communities. We find that the observed species turnover strongly varies the likelihood of community persistence between summer and winter. Importantly, we demonstrate that the observed seasonal interaction changes minimize the variation in the likelihood of persistence associated with species turnover across the year. We find that these community dynamics can be explained as the coupling of individual species to their environment by minimizing both the variation in persistence conditions and the interaction changes between seasons. Our results provide a homeostatic explanation for seasonal species interactions and suggest that monitoring the association of interactions changes with the level of variation in community dynamics can provide a good indicator of the response of species to environmental pressures.

Using fuzzy logic to determine the vulnerability of marine species to climate change.

Science.gov (United States)

Jones, Miranda C; Cheung, William W L

2018-02-01

Marine species are being impacted by climate change and ocean acidification, although their level of vulnerability varies due to differences in species' sensitivity, adaptive capacity and exposure to climate hazards. Due to limited data on the biological and ecological attributes of many marine species, as well as inherent uncertainties in the assessment process, climate change vulnerability assessments in the marine environment frequently focus on a limited number of taxa or geographic ranges. As climate change is already impacting marine biodiversity and fisheries, there is an urgent need to expand vulnerability assessment to cover a large number of species and areas. Here, we develop a modelling approach to synthesize data on species-specific estimates of exposure, and ecological and biological traits to undertake an assessment of vulnerability (sensitivity and adaptive capacity) and risk of impacts (combining exposure to hazards and vulnerability) of climate change (including ocean acidification) for global marine fishes and invertebrates. We use a fuzzy logic approach to accommodate the variability in data availability and uncertainties associated with inferring vulnerability levels from climate projections and species' traits. Applying the approach to estimate the relative vulnerability and risk of impacts of climate change in 1074 exploited marine species globally, we estimated their index of vulnerability and risk of impacts to be on average 52 ± 19 SD and 66 ± 11 SD, scaling from 1 to 100, with 100 being the most vulnerable and highest risk, respectively, under the 'business-as-usual' greenhouse gas emission scenario (Representative Concentration Pathway 8.5). We identified 157 species to be highly vulnerable while 294 species are identified as being at high risk of impacts. Species that are most vulnerable tend to be large-bodied endemic species. This study suggests that the fuzzy logic framework can help estimate climate vulnerabilities and risks

Considerations on the biochemical composition of some freshwater zooplankton species.

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Nicoletta RICCARDI

1999-02-01

Full Text Available The mean elemental (C, H, N and biochemical composition (lipids, carbohydrates and proteins of some abundant crustacean zooplankton species of Italian insubric lakes has been estimated by the analysis of samples collected at different seasons from various environments (Lake Maggiore, Lake Varese, Lake Comabbio, Lake Monate. From each sample an adequate number of specimens of each abundant species was sorted and analyzed by a CHN elemental analyzer. The percentage of lipids, carbohydrates and proteins and the calorific content were calculated from the elemental composition according to Gnaiger & Bitterlich (1984. Inter- and intraspecific variability of biochemical composition was quite high, while elemental composition and calorific content were less variable. An estimate of the mean elemental and biochemical composition of each species was obtained by pooling the data. These mean values have been used to estimate the pools of elements and compounds in the crustacean zooplankton of Lake Comabbio to provide an example of the importance of a multiple approach in zooplankton studies.

Effects of social organization, trap arrangement and density, sampling scale, and population density on bias in population size estimation using some common mark-recapture estimators.

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Manan Gupta

Full Text Available Mark-recapture estimators are commonly used for population size estimation, and typically yield unbiased estimates for most solitary species with low to moderate home range sizes. However, these methods assume independence of captures among individuals, an assumption that is clearly violated in social species that show fission-fusion dynamics, such as the Asian elephant. In the specific case of Asian elephants, doubts have been raised about the accuracy of population size estimates. More importantly, the potential problem for the use of mark-recapture methods posed by social organization in general has not been systematically addressed. We developed an individual-based simulation framework to systematically examine the potential effects of type of social organization, as well as other factors such as trap density and arrangement, spatial scale of sampling, and population density, on bias in population sizes estimated by POPAN, Robust Design, and Robust Design with detection heterogeneity. In the present study, we ran simulations with biological, demographic and ecological parameters relevant to Asian elephant populations, but the simulation framework is easily extended to address questions relevant to other social species. We collected capture history data from the simulations, and used those data to test for bias in population size estimation. Social organization significantly affected bias in most analyses, but the effect sizes were variable, depending on other factors. Social organization tended to introduce large bias when trap arrangement was uniform and sampling effort was low. POPAN clearly outperformed the two Robust Design models we tested, yielding close to zero bias if traps were arranged at random in the study area, and when population density and trap density were not too low. Social organization did not have a major effect on bias for these parameter combinations at which POPAN gave more or less unbiased population size estimates

Estimating Janka hardness from specific gravity for tropical and temperate species

Science.gov (United States)

Michael C. Wiemann; David W. Green

2007-01-01

Using mean values for basic (green) specific gravity and Janka side hardness for individual species obtained from the world literature, regression equations were developed to predict side hardness from specific gravity. Statistical and graphical methods showed that the hardness–specific gravity relationship is the same for tropical and temperate hardwoods, but that the...

Geographical range and local abundance of tree species in China.

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Haibao Ren

Full Text Available Most studies on the geographical distribution of species have utilized a few well-known taxa in Europe and North America, with little research in China and its wide range of climate and forest types. We assembled large datasets to quantify the geographic ranges of tree species in China and to test several biogeographic hypotheses: 1 whether locally abundant species tend to be geographically widespread; 2 whether species are more abundant towards their range-centers; and 3 how abundances are correlated between sites. Local abundances of 651 species were derived from four tree plots of 20-25 ha where all individuals ≥1 cm in stem diameter were mapped and identified taxonomically. Range sizes of these species across China were then estimated from over 460,000 geo-referenced records; a Bayesian approach was used, allowing careful measures of error of each range estimate. The log-transformed range sizes had a bell-shaped distribution with a median of 703,000 km(2, and >90% of 651 species had ranges >10(5 km(2. There was no relationship between local abundance and range size, and no evidence for species being more abundant towards their range-centers. Finally, species' abundances were positively correlated between sites. The widespread nature of most tree species in China suggests few are vulnerable to global extinction, and there is no indication of the double-peril that would result if rare species also had narrow ranges.

Estimation of miniature forest parameters, species, tree shape, and distance between canopies by means of Monte-Carlo based radiative transfer model with forestry surface model

International Nuclear Information System (INIS)

Ding, Y.; Arai, K.

2007-01-01

A method for estimation of forest parameters, species, tree shape, distance between canopies by means of Monte-Carlo based radiative transfer model with forestry surface model is proposed. The model is verified through experiments with the miniature model of forest, tree array of relatively small size of trees. Two types of miniature trees, ellipse-looking and cone-looking canopy are examined in the experiments. It is found that the proposed model and experimental results show a coincidence so that the proposed method is validated. It is also found that estimation of tree shape, trunk tree distance as well as distinction between deciduous or coniferous trees can be done with the proposed model. Furthermore, influences due to multiple reflections between trees and interaction between trees and under-laying grass are clarified with the proposed method

Nest survival modelling using a multi-species approach in forests managed for timber and biofuel feedstock

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Loman, Zachary G.; Monroe, Adrian; Riffell, Samuel K.; Miller, Darren A.; Vilella, Francisco; Wheat, Bradley R.; Rush, Scott A.; Martin, James A.

2018-01-01

Switchgrass (Panicum virgatum) intercropping is a novel forest management practice for biomass production intended to generate cellulosic feedstocks within intensively managed loblolly pine‐dominated landscapes. These pine plantations are important for early‐successional bird species, as short rotation times continually maintain early‐successional habitat. We tested the efficacy of using community models compared to individual surrogate species models in understanding influences on nest survival. We analysed nest data to test for differences in habitat use for 14 bird species in plots managed for switchgrass intercropping and controls within loblolly pine (Pinus taeda) plantations in Mississippi, USA.We adapted hierarchical models using hyper‐parameters to incorporate information from both common and rare species to understand community‐level nest survival. This approach incorporates rare species that are often discarded due to low sample sizes, but can inform community‐level demographic parameter estimates. We illustrate use of this approach in generating both species‐level and community‐wide estimates of daily survival rates for songbird nests. We were able to include rare species with low sample size (minimum n = 5) to inform a hyper‐prior, allowing us to estimate effects of covariates on daily survival at the community level, then compare this with a single‐species approach using surrogate species. Using single‐species models, we were unable to generate estimates below a sample size of 21 nests per species.Community model species‐level survival and parameter estimates were similar to those generated by five single‐species models, with improved precision in community model parameters.Covariates of nest placement indicated that switchgrass at the nest site (<4 m) reduced daily nest survival, although intercropping at the forest stand level increased daily nest survival.Synthesis and applications. Community models represent a viable

Monitoring multiple species: Estimating state variables and exploring the efficacy of a monitoring program

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Mattfeldt, S.D.; Bailey, L.L.; Grant, E.H.C.

2009-01-01

Monitoring programs have the potential to identify population declines and differentiate among the possible cause(s) of these declines. Recent criticisms regarding the design of monitoring programs have highlighted a failure to clearly state objectives and to address detectability and spatial sampling issues. Here, we incorporate these criticisms to design an efficient monitoring program whose goals are to determine environmental factors which influence the current distribution and measure change in distributions over time for a suite of amphibians. In designing the study we (1) specified a priori factors that may relate to occupancy, extinction, and colonization probabilities and (2) used the data collected (incorporating detectability) to address our scientific questions and adjust our sampling protocols. Our results highlight the role of wetland hydroperiod and other local covariates in the probability of amphibian occupancy. There was a change in overall occupancy probabilities for most species over the first three years of monitoring. Most colonization and extinction estimates were constant over time (years) and space (among wetlands), with one notable exception: local extinction probabilities for Rana clamitans were lower for wetlands with longer hydroperiods. We used information from the target system to generate scenarios of population change and gauge the ability of the current sampling to meet monitoring goals. Our results highlight the limitations of the current sampling design, emphasizing the need for long-term efforts, with periodic re-evaluation of the program in a framework that can inform management decisions.

In search of critically endangered species: the current situation of two tiny salamander species in the Neotropical mountains of Mexico.

Science.gov (United States)

Sandoval-Comte, Adriana; Pineda, Eduardo; Aguilar-López, José L

2012-01-01

Worldwide, one in every three species of amphibian is endangered, 39 species have gone extinct in the last 500 years and another 130 species are suspected to have gone extinct in recent decades. Of the amphibians, salamanders have the highest portion of their species in one of the risk categories, even higher than the frogs. To date there have been few studies that have used recent field data to examine the status of populations of endangered salamanders. In this study we evaluate the current situation of two tiny salamanders, Parvimolge townsendi and Thorius pennatulus, both of which are distributed at intermediate elevations in the mountains of the northern Neotropics and are considered to be critically endangered; the first has been proposed as possibly extinct. By carrying out exhaustive surveys in both historical and potentially suitable sites for these two species, we evaluated their abundance and the characteristics of their habitats, and we estimated their potential geographic distribution. We visited 22 sites, investing 672 person-hours of sampling effort in the surveys, and found 201 P. townsendi salamanders in 11 sites and only 13 T. pennatulus salamanders in 5 sites. Both species were preferentially found in cloud forest fragments that were well conserved or only moderately transformed, and some of the salamanders were found in shade coffee plantations. The potential distribution area of both species is markedly fragmented and we estimate that it has decreased by more than 48%. The results of this study highlight the importance of carrying out exhaustive, systematic field surveys to obtain accurate information about the current situation of critically endangered species, and help us better understand the crisis that amphibians are facing worldwide.

Uncertainty in Population Estimates for Endangered Animals and Improving the Recovery Process

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Janet L. Rachlow

2013-08-01

Full Text Available United States recovery plans contain biological information for a species listed under the Endangered Species Act and specify recovery criteria to provide basis for species recovery. The objective of our study was to evaluate whether recovery plans provide uncertainty (e.g., variance with estimates of population size. We reviewed all finalized recovery plans for listed terrestrial vertebrate species to record the following data: (1 if a current population size was given, (2 if a measure of uncertainty or variance was associated with current estimates of population size and (3 if population size was stipulated for recovery. We found that 59% of completed recovery plans specified a current population size, 14.5% specified a variance for the current population size estimate and 43% specified population size as a recovery criterion. More recent recovery plans reported more estimates of current population size, uncertainty and population size as a recovery criterion. Also, bird and mammal recovery plans reported more estimates of population size and uncertainty compared to reptiles and amphibians. We suggest the use of calculating minimum detectable differences to improve confidence when delisting endangered animals and we identified incentives for individuals to get involved in recovery planning to improve access to quantitative data.

Estimating bacterial diversity for ecological studies: methods, metrics, and assumptions.

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Julia Birtel

Full Text Available Methods to estimate microbial diversity have developed rapidly in an effort to understand the distribution and diversity of microorganisms in natural environments. For bacterial communities, the 16S rRNA gene is the phylogenetic marker gene of choice, but most studies select only a specific region of the 16S rRNA to estimate bacterial diversity. Whereas biases derived from from DNA extraction, primer choice and PCR amplification are well documented, we here address how the choice of variable region can influence a wide range of standard ecological metrics, such as species richness, phylogenetic diversity, β-diversity and rank-abundance distributions. We have used Illumina paired-end sequencing to estimate the bacterial diversity of 20 natural lakes across Switzerland derived from three trimmed variable 16S rRNA regions (V3, V4, V5. Species richness, phylogenetic diversity, community composition, β-diversity, and rank-abundance distributions differed significantly between 16S rRNA regions. Overall, patterns of diversity quantified by the V3 and V5 regions were more similar to one another than those assessed by the V4 region. Similar results were obtained when analyzing the datasets with different sequence similarity thresholds used during sequences clustering and when the same analysis was used on a reference dataset of sequences from the Greengenes database. In addition we also measured species richness from the same lake samples using ARISA Fingerprinting, but did not find a strong relationship between species richness estimated by Illumina and ARISA. We conclude that the selection of 16S rRNA region significantly influences the estimation of bacterial diversity and species distributions and that caution is warranted when comparing data from different variable regions as well as when using different sequencing techniques.

Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies.

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Hagen, Oskar; Andermann, Tobias; Quental, Tiago B; Antonelli, Alexandre; Silvestro, Daniele

2018-05-01

The estimation of diversification rates is one of the most vividly debated topics in modern systematics, with considerable controversy surrounding the power of phylogenetic and fossil-based approaches in estimating extinction. Van Valen's seminal work from 1973 proposed the "Law of constant extinction," which states that the probability of extinction of taxa is not dependent on their age. This assumption of age-independent extinction has prevailed for decades with its assessment based on survivorship curves, which, however, do not directly account for the incompleteness of the fossil record, and have rarely been applied at the species level. Here, we present a Bayesian framework to estimate extinction rates from the fossil record accounting for age-dependent extinction (ADE). Our approach, unlike previous implementations, explicitly models unobserved species and accounts for the effects of fossil preservation on the observed longevity of sampled lineages. We assess the performance and robustness of our method through extensive simulations and apply it to a fossil data set of terrestrial Carnivora spanning the past 40 myr. We find strong evidence of ADE, as we detect the extinction rate to be highest in young species and declining with increasing species age. For comparison, we apply a recently developed analogous ADE model to a dated phylogeny of extant Carnivora. Although the phylogeny-based analysis also infers ADE, it indicates that the extinction rate, instead, increases with increasing taxon age. The estimated mean species longevity also differs substantially, with the fossil-based analyses estimating 2.0 myr, in contrast to 9.8 myr derived from the phylogeny-based inference. Scrutinizing these discrepancies, we find that both fossil and phylogeny-based ADE models are prone to high error rates when speciation and extinction rates increase or decrease through time. However, analyses of simulated and empirical data show that fossil-based inferences are more

Estimation of water pollution by genetic biomarkers in tilapia and ...

African Journals Online (AJOL)

This study was aimed at the estimation of water pollution with heavy metals using four biomarkers as well as to study the species-site interaction. Two species of tilapia as well as two catfish species caught from four sites that represent differential environmental stresses were used for this purpose. Water samples and gills ...

An Efficient Acoustic Density Estimation Method with Human Detectors Applied to Gibbons in Cambodia.

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Darren Kidney

Full Text Available Some animal species are hard to see but easy to hear. Standard visual methods for estimating population density for such species are often ineffective or inefficient, but methods based on passive acoustics show more promise. We develop spatially explicit capture-recapture (SECR methods for territorial vocalising species, in which humans act as an acoustic detector array. We use SECR and estimated bearing data from a single-occasion acoustic survey of a gibbon population in northeastern Cambodia to estimate the density of calling groups. The properties of the estimator are assessed using a simulation study, in which a variety of survey designs are also investigated. We then present a new form of the SECR likelihood for multi-occasion data which accounts for the stochastic availability of animals. In the context of gibbon surveys this allows model-based estimation of the proportion of groups that produce territorial vocalisations on a given day, thereby enabling the density of groups, instead of the density of calling groups, to be estimated. We illustrate the performance of this new estimator by simulation. We show that it is possible to estimate density reliably from human acoustic detections of visually cryptic species using SECR methods. For gibbon surveys we also show that incorporating observers' estimates of bearings to detected groups substantially improves estimator performance. Using the new form of the SECR likelihood we demonstrate that estimates of availability, in addition to population density and detection function parameters, can be obtained from multi-occasion data, and that the detection function parameters are not confounded with the availability parameter. This acoustic SECR method provides a means of obtaining reliable density estimates for territorial vocalising species. It is also efficient in terms of data requirements since since it only requires routine survey data. We anticipate that the low-tech field requirements will

Accounting for the ecosystem services of migratory species: Quantifying migration support and spatial subsidies

Science.gov (United States)

Semmens, Darius J.; Diffendorfer, James E.; López-Hoffman, Laura; Shapiro, Carl D.

2011-01-01

Migratory species support ecosystem process and function in multiple areas, establishing ecological linkages between their different habitats. As they travel, migratory species also provide ecosystem services to people in many different locations. Previous research suggests there may be spatial mismatches between locations where humans use services and the ecosystems that produce them. This occurs with migratory species, between the areas that most support the species' population viability – and hence their long-term ability to provide services – and the locations where species provide the most ecosystem services. This paper presents a conceptual framework for estimating how much a particular location supports the provision of ecosystem services in other locations, and for estimating the extent to which local benefits are dependent upon other locations. We also describe a method for estimating the net payment, or subsidy, owed by or to a location that balances benefits received and support provided by locations throughout the migratory range of multiple species. The ability to quantify these spatial subsidies could provide a foundation for the establishment of markets that incentivize cross-jurisdictional cooperative management of migratory species. It could also provide a mechanism for resolving conflicts over the sustainable and equitable allocation of exploited migratory species.

Relative abundance estimations of Chengal trees in a tropical rainforest by using modified canopy fractional cover (mCFC)

International Nuclear Information System (INIS)

Hassan, N

2014-01-01

Tree species composition estimations are important to sustain forest management. This study estimates relative abundance of useful timber tree species (chengal) using Hyperion EO-1 satellite data. For the estimation, modified Canopy Fractional Cover (mCFC) was developed using Canopy Fractional Cover (CFC). mCFC was more sensitive to estimate relative abundance of chengal trees rather than Mixture Tuned Matched Filtering (MTMF). Meanwhile, MTMF was more sensitive to estimate the relative abundance of undisturbed forest. Accuracy suggests that the mCFC model is better to explain relative abundance of chengal trees than MTMF. Therefore, it can be concluded that relative abundance of tree species extracted from Hyperion EO-1 satellite data using modified Canopy Fractional Cover is an obtrusive approach used for identifying tree species composition

Pitfalls in quantifying species turnover: the residency effect

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Kevin Chase Burns

2014-03-01

Full Text Available The composition of ecological communities changes continuously through time and space. Understanding this turnover in species composition is a central goal in biogeography, but quantifying species turnover can be problematic. Here, I describe an underappreciated source of bias in quantifying species turnover, namely ‘the residency effect’, which occurs when the contiguous distributions of species across sampling domains are small relative to census intervals. I present the results of a simulation model that illustrates the problem theoretically and then I demonstrate the problem empirically using a long-term dataset of plant species turnover on islands. Results from both exercises indicate that empirical estimates of species turnover may be susceptible to significant observer bias, which may potentially cloud a better understanding of how the composition of ecological communities changes through time.

PollenCALC: Software for estimation of pollen compatibility of self-incompatible allo- and autotetraploid species

DEFF Research Database (Denmark)

Aguirre, Andrea A; Wollenweber, Bernd; Frei, Ursula K

2012-01-01

available for predicting pollen haplotype frequencies and pollen compatibility in tetraploid species. Results PollenCALC is a software tool written in C++ programming language that can predict pollen compatibility percentages for polyploid species with a two-locus (S, Z) self-incompatibility system...

Estimating Chlorophyll Fluorescence Parameters Using the Joint Fraunhofer Line Depth and Laser-Induced Saturation Pulse (FLD-LISP Method in Different Plant Species

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Parinaz Rahimzadeh-Bajgiran

2017-06-01

Full Text Available A comprehensive evaluation of the recently developed Fraunhofer line depth (FLD and laser-induced saturation pulse (FLD-LISP method was conducted to measure chlorophyll fluorescence (ChlF parameters of the quantum yield of photosystem II (ΦPSII, non-photochemical quenching (NPQ, and the photosystem II-based electron transport rate (ETR in three plant species including paprika (C3 plant, maize (C4 plant, and pachira (C3 plant. First, the relationships between photosynthetic photon flux density (PPFD and ChlF parameters retrieved using FLD-LISP and the pulse amplitude-modulated (PAM methods were analyzed for all three species. Then the relationships between ChlF parameters measured using FLD-LISP and PAM were evaluated for the plants in different growth stages of leaves from mature to aging conditions. The relationships of ChlF parameters/PPFD were similar in both FLD-LISP and PAM methods in all plant species. ΦPSII showed a linear relationship with PPFD in all three species whereas NPQ was found to be linearly related to PPFD in paprika and maize, but not for pachira. The ETR/PPFD relationship was nonlinear with increasing values observed for PPFDs lower than about 800 μmol m−2 s−1 for paprika, lower than about 1200 μmol m−2 s−1 for maize, and lower than about 800 μmol m−2 s−1 for pachira. The ΦPSII, NPQ, and ETR of both the FLD-LISP and PAM methods were very well correlated (R2 = 0.89, RMSE = 0.05, (R2 = 0.86, RMSE = 0.44, and (R2 = 0.88, RMSE = 24.69, respectively, for all plants. Therefore, the FLD-LISP method can be recommended as a robust technique for the estimation of ChlF parameters.

[Biomass allometric equations of nine common tree species in an evergreen broadleaved forest of subtropical China].

Science.gov (United States)

Zuo, Shu-di; Ren, Yin; Weng, Xian; Ding, Hong-feng; Luo, Yun-jian

2015-02-01

Biomass allometric equation (BAE) considered as a simple and reliable method in the estimation of forest biomass and carbon was used widely. In China, numerous studies focused on the BAEs for coniferous forest and pure broadleaved forest, and generalized BAEs were frequently used to estimate the biomass and carbon of mixed broadleaved forest, although they could induce large uncertainty in the estimates. In this study, we developed the species-specific and generalized BAEs using biomass measurement for 9 common broadleaved trees (Castanopsis fargesii, C. lamontii, C. tibetana, Lithocarpus glaber, Sloanea sinensis, Daphniphyllum oldhami, Alniphyllum fortunei, Manglietia yuyuanensis, and Engelhardtia fenzlii) of subtropical evergreen broadleaved forest, and compared differences in species-specific and generalized BAEs. The results showed that D (diameter at breast height) was a better independent variable in estimating the biomass of branch, leaf, root, aboveground section and total tree than a combined variable (D2 H) of D and H (tree height) , but D2H was better than D in estimating stem biomass. R2 (coefficient of determination) values of BAEs for 6 species decreased when adding H as the second independent variable into D- only BAEs, where R2 value for S. sinensis decreased by 5.6%. Compared with generalized D- and D2H-based BAEs, standard errors of estimate (SEE) of BAEs for 8 tree species decreased, and similar decreasing trend was observed for different components, where SEEs of the branch decreased by 13.0% and 20.3%. Therefore, the biomass carbon storage and its dynamic estimates were influenced largely by tree species and model types. In order to improve the accuracy of the estimates of biomass and carbon, we should consider the differences in tree species and model types.

Esprit Grows in Brooklyn

Science.gov (United States)

Progressive Architecture, 1978

1978-01-01

The Brooklyn Children's Museum, the world's oldest children's museum, has a new home underground. The museum's teaching collection of artifacts is particularly strong in the areas of ethnology, natural history, and technology. Objects relating to these fields are organized according to the historic physical divisions of fire, air, earth, and…

Measuring Ucrit and endurance: equipment choice influences estimates of fish swimming performance.

Science.gov (United States)

Kern, P; Cramp, R L; Gordos, M A; Watson, J R; Franklin, C E

2018-01-01

This study compared the critical swimming speed (U crit ) and endurance performance of three Australian freshwater fish species in different swim-test apparatus. Estimates of U crit measured in a large recirculating flume were greater for all species compared with estimates from a smaller model of the same recirculating flume. Large differences were also observed for estimates of endurance swimming performance between these recirculating flumes and a free-surface swim tunnel. Differences in estimates of performance may be attributable to variation in flow conditions within different types of swim chambers. Variation in estimates of swimming performance between different types of flumes complicates the application of laboratory-based measures to the design of fish passage infrastructure. © 2017 The Fisheries Society of the British Isles.

In search of critically endangered species: the current situation of two tiny salamander species in the Neotropical mountains of Mexico.

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Adriana Sandoval-Comte

Full Text Available Worldwide, one in every three species of amphibian is endangered, 39 species have gone extinct in the last 500 years and another 130 species are suspected to have gone extinct in recent decades. Of the amphibians, salamanders have the highest portion of their species in one of the risk categories, even higher than the frogs. To date there have been few studies that have used recent field data to examine the status of populations of endangered salamanders. In this study we evaluate the current situation of two tiny salamanders, Parvimolge townsendi and Thorius pennatulus, both of which are distributed at intermediate elevations in the mountains of the northern Neotropics and are considered to be critically endangered; the first has been proposed as possibly extinct. By carrying out exhaustive surveys in both historical and potentially suitable sites for these two species, we evaluated their abundance and the characteristics of their habitats, and we estimated their potential geographic distribution. We visited 22 sites, investing 672 person-hours of sampling effort in the surveys, and found 201 P. townsendi salamanders in 11 sites and only 13 T. pennatulus salamanders in 5 sites. Both species were preferentially found in cloud forest fragments that were well conserved or only moderately transformed, and some of the salamanders were found in shade coffee plantations. The potential distribution area of both species is markedly fragmented and we estimate that it has decreased by more than 48%. The results of this study highlight the importance of carrying out exhaustive, systematic field surveys to obtain accurate information about the current situation of critically endangered species, and help us better understand the crisis that amphibians are facing worldwide.

Plant Distribution Data Show Broader Climatic Limits than Expert-Based Climatic Tolerance Estimates.

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Caroline A Curtis

Full Text Available Although increasingly sophisticated environmental measures are being applied to species distributions models, the focus remains on using climatic data to provide estimates of habitat suitability. Climatic tolerance estimates based on expert knowledge are available for a wide range of plants via the USDA PLANTS database. We aim to test how climatic tolerance inferred from plant distribution records relates to tolerance estimated by experts. Further, we use this information to identify circumstances when species distributions are more likely to approximate climatic tolerance.We compiled expert knowledge estimates of minimum and maximum precipitation and minimum temperature tolerance for over 1800 conservation plant species from the 'plant characteristics' information in the USDA PLANTS database. We derived climatic tolerance from distribution data downloaded from the Global Biodiversity and Information Facility (GBIF and corresponding climate from WorldClim. We compared expert-derived climatic tolerance to empirical estimates to find the difference between their inferred climate niches (ΔCN, and tested whether ΔCN was influenced by growth form or range size.Climate niches calculated from distribution data were significantly broader than expert-based tolerance estimates (Mann-Whitney p values << 0.001. The average plant could tolerate 24 mm lower minimum precipitation, 14 mm higher maximum precipitation, and 7° C lower minimum temperatures based on distribution data relative to expert-based tolerance estimates. Species with larger ranges had greater ΔCN for minimum precipitation and minimum temperature. For maximum precipitation and minimum temperature, forbs and grasses tended to have larger ΔCN while grasses and trees had larger ΔCN for minimum precipitation.Our results show that distribution data are consistently broader than USDA PLANTS experts' knowledge and likely provide more robust estimates of climatic tolerance, especially for

Evaluating the performance of species richness estimators: sensitivity to sample grain size

DEFF Research Database (Denmark)

Hortal, Joaquín; Borges, Paulo A. V.; Gaspar, Clara

2006-01-01

and several recent estimators [proposed by Rosenzweig et al. (Conservation Biology, 2003, 17, 864-874), and Ugland et al. (Journal of Animal Ecology, 2003, 72, 888-897)] performed poorly. 3.  Estimations developed using the smaller grain sizes (pair of traps, traps, records and individuals) presented similar....... Data obtained with standardized sampling of 78 transects in natural forest remnants of five islands were aggregated in seven different grains (i.e. ways of defining a single sample): islands, natural areas, transects, pairs of traps, traps, database records and individuals to assess the effect of using...

Estimating forest and woodland aboveground biomass using active and passive remote sensing

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Wu, Zhuoting; Dye, Dennis G.; Vogel, John M.; Middleton, Barry R.

2016-01-01

Aboveground biomass was estimated from active and passive remote sensing sources, including airborne lidar and Landsat-8 satellites, in an eastern Arizona (USA) study area comprised of forest and woodland ecosystems. Compared to field measurements, airborne lidar enabled direct estimation of individual tree height with a slope of 0.98 (R2 = 0.98). At the plot-level, lidar-derived height and intensity metrics provided the most robust estimate for aboveground biomass, producing dominant species-based aboveground models with errors ranging from 4 to 14Mg ha –1 across all woodland and forest species. Landsat-8 imagery produced dominant species-based aboveground biomass models with errors ranging from 10 to 28 Mg ha –1. Thus, airborne lidar allowed for estimates for fine-scale aboveground biomass mapping with low uncertainty, while Landsat-8 seems best suited for broader spatial scale products such as a national biomass essential climate variable (ECV) based on land cover types for the United States.

Systematics of the Dendropsophus leucophyllatus species complex (Anura: Hylidae): Cryptic diversity and the description of two new species

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Caminer, Marcel A.; Milá, Borja; Jansen, Martin; Fouquet, Antoine; Venegas, Pablo J.; Chávez, Germán; Lougheed, Stephen C.

2017-01-01

Genetic data in studies of systematics of Amazonian amphibians frequently reveal that purportedly widespread single species in reality comprise species complexes. This means that real species richness may be significantly higher than current estimates. Here we combine genetic, morphological, and bioacoustic data to assess the phylogenetic relationships and species boundaries of two Amazonian species of the Dendropsophus leucophyllatus species group: D. leucophyllatus and D. triangulum. Our results uncovered the existence of five confirmed and four unconfirmed candidate species. Among the confirmed candidate species, three have available names: Dendropsophus leucophyllatus, Dendropsophus triangulum, and Dendropsophus reticulatus, this last being removed from the synonymy of D. triangulum. A neotype of D. leucophyllatus is designated. We describe the remaining two confirmed candidate species, one from Bolivia and another from Peru. All confirmed candidate species are morphologically distinct and have much smaller geographic ranges than those previously reported for D. leucophyllatus and D. triangulum sensu lato. Dendropsophus leucophyllatus sensu stricto occurs in the Guianan region. Dendropsophus reticulatus comb. nov. corresponds to populations in the Amazon basin of Brazil, Ecuador, and Peru previously referred to as D. triangulum. Dendropsophus triangulum sensu stricto is the most widely distributed species; it occurs in Amazonian Ecuador, Peru and Brazil, reaching the state of Pará. We provide accounts for all described species including an assessment of their conservation status. PMID:28248998

Predicting weed problems in maize cropping by species distribution modelling

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Bürger, Jana

2014-02-01

Full Text Available Increasing maize cultivation and changed cropping practices promote the selection of typical maize weeds that may also profit strongly from climate change. Predicting potential weed problems is of high interest for plant production. Within the project KLIFF, experiments were combined with species distribution modelling for this task in the region of Lower Saxony, Germany. For our study, we modelled ecological and damage niches of nine weed species that are significant and wide spread in maize cropping in a number of European countries. Species distribution models describe the ecological niche of a species, these are the environmental conditions under which a species can maintain a vital population. It is also possible to estimate a damage niche, i.e. the conditions under which a species causes damage in agricultural crops. For this, we combined occurrence data of European national data bases with high resolution climate, soil and land use data. Models were also projected to simulated climate conditions for the time horizon 2070 - 2100 in order to estimate climate change effects. Modelling results indicate favourable conditions for typical maize weed occurrence virtually all over the study region, but only a few species are important in maize cropping. This is in good accordance with the findings of an earlier maize weed monitoring. Reaction to changing climate conditions is species-specific, for some species neutral (E. crus-galli, other species may gain (Polygonum persicaria or loose (Viola arvensis large areas of suitable habitats. All species with damage potential under present conditions will remain important in maize cropping, some more species will gain regional importance (Calystegia sepium, Setara viridis.

Differences in species richness patterns between unicellular and multicellular organisms.

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Hillebrand, Helmut; Watermann, Frank; Karez, Rolf; Berninger, Ulrike-G

2001-01-01

For unicellular organisms, a lack of effects of local species richness on ecosystem function has been proposed due to their locally high species richness and their ubiquitous distribution. High dispersal ability and high individual numbers may enable unicellular taxa to occur everywhere. Using our own and published data sets on uni- and multicellular organisms, we conducted thorough statistical analyses to test whether (1) unicellular taxa show higher relative local species richness compared to multicellular taxa, (2) unicellular taxa show lower slopes of the species:area relationships and species:individuals relationships, and (3) the species composition of unicellular taxa is less influenced by geographic distance compared to multicellular taxa. We found higher local species richness compared to the global species pool for unicellular organisms than for metazoan taxa. The difference was significant if global species richness was conservatively estimated but not if extrapolated, and therefore higher richness estimates were used. Both microalgae and protozoans showed lower slopes between species richness and sample size (area or individuals) compared to macrozoobenthos, also indicating higher local species richness for unicellular taxa. The similarity of species composition of both benthic diatoms and ciliates decreased with increasing geographic distance. This indicated restricted dispersal ability of protists and the absence of ubiquity. However, a steeper slope between similarity and distance was found for polychaetes and corals, suggesting a stronger effect of distance on the dispersal of metazoans compared to unicellular taxa. In conclusion, we found partly different species richness patterns among uni- and multicellular eukaryotes, but no strict ubiquity of unicellular taxa. Therefore, the effect of local unicellular species richness on ecosystem function has to be reanalyzed. Macroecological patterns suggested for multicellular organisms may differ in

Relative abundance estimations of chengal tree in a tropical rainforest by using modified Canopy Fractional Cover (mCFC)

International Nuclear Information System (INIS)

Hassan, N

2014-01-01

Tree species composition estimations are important to sustain forest management. This study challenged estimates of relative abundance of useful timber tree species (chengal) using Hyperion EO-1 satellite data. For the estimation, modified Canopy Fractional Cover (mCFC) was developed using Canopy Fractional Cover (CFC). mCFC was more sensitive to estimate relative abundance of chengal trees rather than Mixture Tuned Matched Filtering (MTMF). Meanwhile, MTMF was more sensitive to estimate the relative abundance of undisturbed forest. Accuracy suggests that the mCFC model is better to explain relative abundance of chengal trees than MTMF. Therefore, it can be concluded that relative abundance of trees species extracted from Hyperion EO-1 satellite data using modified Canopy Fractional Cover is an obtrusive approach used for identifying trees species composition

Improving North American forest biomass estimates from literature synthesis and meta-analysis of existing biomass equations

Science.gov (United States)

David C. Chojnacky; Jennifer C. Jenkins; Amanda K. Holland

2009-01-01

Thousands of published equations purport to estimate biomass of individual trees. These equations are often based on very small samples, however, and can provide widely different estimates for trees of the same species. We addressed this issue in a previous study by devising 10 new equations that estimated total aboveground biomass for all species in North America (...

Web-based Interspecies Correlation Estimation (Web-ICE) for Acute Toxicity: User Manual 3.2

Science.gov (United States)

The Web-ICE Endangered Species module simultaneously estimates toxicity to taxa representing threatened or endangered species using up to 25 surrogates. This module batch processes toxicity values for endangered species from all species, genus, and family level models available f...

Diversity of Monogononta rotifer species among standing waterbodies in northern Cambodia

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Ratha Sor

2014-08-01

Full Text Available The incidence and abundance of Monogononta rotifer species were recorded from lakes and reservoirs in the upper part of the Cambodian Mekong River basin in April and November 2010. One hundred and seven species are reported, 25 of which are new records to Cambodia and 8 taxa were unidentifiable to species level. Species richness at the regional and local scale was not significantly different between habitat types or between seasons, whether it was estimated using incidence or abundance data. Comparison of incidence data also revealed no significant difference from species richness of ponds concurrently sampled in the same region. There appeared to be a high level of diversity among sites that could not be attributed to nestedness or to the 5 environmental variables measured. Each habitat type and season offered substantially different rotifer communities, with the proportion of unshared species between sample sets ranging from 14-49%. Non-metric multidimensional scaling and PERMANOVA analyses also revealed clustering and significant differences among sample sets based on habitat type and season. Therefore, each habitat type and season contributed to the overall rotifer biodiversity. When the incidence data from this study are combined with those in previously reported studies, the overall species richness estimate for Cambodia is 403 species (95% CI = 386-432 and the number of species records has reached 306. 

Genetic variability in five species of Anostomidae (Ostariophysi - Characiformes

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Chiari Lucimara

1999-01-01

Full Text Available Genetic variability was studied in five fish species (Anostomidae: Schizodon intermedius and S. nasutus and Leporinus friderici, L. elongatus and L. obtusidens, collected at one location on the Tibagi River (Paraná, Brazil. The protein data from seven systems coded collectively for 19 loci in the liver, muscle and heart. Nine of these loci were polymorphic. The estimated proportion of polymorphism loci ( varied from 16.7% in S. intermedius to 36.9% in L. friderici; the mean heterozygosity observed (o was 0.027 ± 0.015 and 0.109 ± 0.042, respectively. The estimated value of the genetic identity among L. friderici and S. intermedius (0.749 and S. nasutus (0.787 suggested that these are "congeneric" species. Morphological characteristics indicate that these species belong to distinct genera, while isoenzymatic data show that they are very similar at the genetic/biochemical level.

Why some plant species are rare.

Science.gov (United States)

Wieger Wamelink, G W; Wamelink, G W Weiger; Goedhart, Paul W; Frissel, Joep; Frissel, Josep Y

2014-01-01

Biodiversity, including plant species diversity, is threatened worldwide as a result of anthropogenic pressures such as an increase of pollutants and climate change. Rare species in particular are on the verge of becoming extinct. It is still unclear as to why some plant species are rare and others are not. Are they rare due to: intrinsic reasons, dispersal capacity, the effects of management or abiotic circumstances? Habitat preference of rare plant species may play an important role in determining why some species are rare. Based on an extensive data set of soil parameters we investigated if rarity is due to a narrow habitat preference for abiotic soil parameters. For 23 different abiotic soil parameters, of which the most influential were groundwater-table, soil-pH and nutrient-contents, we estimated species responses for common and rare species. Based on the responses per species we calculated the range of occurrence, the range between the 5 and 95 percentile of the response curve giving the habitat preference. Subsequently, we calculated the average response range for common and rare species. In addition, we designed a new graphic in order to provide a better means for presentation of the results. The habitat preferences of rare species for abiotic soil conditions are significantly narrower than for common species. Twenty of the twenty-three abiotic parameters showed on average significantly narrower habitat preferences for rare species than for common species; none of the abiotic parameters showed on average a narrower habitat preference for common species. The results have major implications for the conservation of rare plant species; accordingly management and nature development should be focussed on the maintenance and creation of a broad range of environmental conditions, so that the requirements of rare species are met. The conservation of (abiotic) gradients within ecosystems is particularly important for preserving rare species.

Estimating tree cavity distributions from historical FIA data

Science.gov (United States)

Mark D. Nelson; Charlotte. Roy

2012-01-01

Tree cavities provide important habitat features for a variety of wildlife species. We describe an approach for using historical FIA data to estimate the number of trees containing cavities during the 1990s in seven states of the Upper Midwest. We estimated a total of 280 million cavity-containing trees. Iowa and Missouri had the highest percentages of cavity-...

An analysis of species boundaries and biogeographic patterns in a cryptic species complex: the rotifer--Brachionus plicatilis.

Science.gov (United States)

Suatoni, Elizabeth; Vicario, Saverio; Rice, Sean; Snell, Terry; Caccone, Adalgisa

2006-10-01

Since the advent of molecular phylogenetics, there is increasing evidence that many small aquatic and marine invertebrates--once believed to be single, cosmopolitan species--are in fact cryptic species complexes. Although the application of the biological species concept is central to the identification of species boundaries in these cryptic complexes, tests of reproductive isolation do not frequently accompany phylogenetic studies. Because different species concepts generally identify different boundaries in cryptic complexes, studies that apply multiple species concepts are needed to gain a more detailed understanding of patterns of diversification in these taxa. Here we explore different methods of empirically delimiting species boundaries in the salt water rotifer Brachionus plicatilis by comparing reproductive data (i.e., the traditional biological species concept) to phylogenetic data (the genealogical species concept). Based on a high degree of molecular sequence divergence and largely concordant genetic patterns in COI and ITS1, the genealogical species hypothesis indicates the existence of at least 14 species--the highest estimate for the group thus far. A test of the genealogical species concept with biological crosses shows a fairly high level of concordance, depending on the degree of reproductive success used to draw boundaries. The convergence of species concepts in this group suggests that many of the species within the group may be old. Although the diversity of the group is higher than previously understood, geographic distributions remain broad. Efficient passive dispersal has resulted in global distributions for many species with some evidence of isolation by distance over large geographic scales. These patterns concur with expectations that micro-meiofauna (0.1-1mm) have biogeographies intermediate to microbial organisms and large vertebrates. Sympatry of genetically distant strains is common.

Estimating abundance of adult striped bass in reservoirs using mobile hydroacoustics

Science.gov (United States)

Hightower, Joseph E.; Taylor, J. Christopher; Degan, Donald J.

2013-01-01

Hydroacoustic surveys have proven valuable for estimating reservoir forage fish abundance but are more challenging for adult predators such as striped bass Morone saxatilis. Difficulties in assessing striped bass in reservoirs include their low density and the inability to distinguish species with hydroacoustic data alone. Despite these difficulties, mobile hydroacoustic surveys have potential to provide useful data for management because of the large sample volume compared to traditional methods such as gill netting and the ability to target specific areas where striped bass are aggregated. Hydroacoustic estimates of reservoir striped bass have been made using mobile surveys, with data analysis using a threshold for target strength in order to focus on striped bass-sized targets, and auxiliary sampling with nets to obtain species composition. We provide recommendations regarding survey design, based in part on simulations that provide insight on the level of effort that would be required to achieve reasonable estimates of abundance. Future surveys may be able to incorporate telemetry or other sonar techniques such as side-scan or multibeam in order to focus survey efforts on productive habitats (within lake and vertically). However, species apportionment will likely remain the main source of error, and we see no hydroacoustic system on the horizon that will identify fish by species at the spatial and temporal scale required for most reservoir surveys. In situations where species composition can be reliably assessed using traditional gears, abundance estimates from hydroacoustic methods should be useful to fishery managers interested in developing harvest regulations, assessing survival of stocked juveniles, identifying seasonal aggregations, and examining predator–prey balance.

Quantifying Temporal Genomic Erosion in Endangered Species.

Science.gov (United States)

Díez-Del-Molino, David; Sánchez-Barreiro, Fatima; Barnes, Ian; Gilbert, M Thomas P; Dalén, Love

2018-03-01

Many species have undergone dramatic population size declines over the past centuries. Although stochastic genetic processes during and after such declines are thought to elevate the risk of extinction, comparative analyses of genomic data from several endangered species suggest little concordance between genome-wide diversity and current population sizes. This is likely because species-specific life-history traits and ancient bottlenecks overshadow the genetic effect of recent demographic declines. Therefore, we advocate that temporal sampling of genomic data provides a more accurate approach to quantify genetic threats in endangered species. Specifically, genomic data from predecline museum specimens will provide valuable baseline data that enable accurate estimation of recent decreases in genome-wide diversity, increases in inbreeding levels, and accumulation of deleterious genetic variation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Application of 15N-enrichment methodologies to estimate nitrogen fixation in Casuarina equisetifolia

Science.gov (United States)

John A. Parrotta; Dwight D. Baker; Maurice Fried

1994-01-01

The 15N-enrichment technique for estimating biological nitrogen fixation in Casuarina equisetifolia J.R. & G. Forst. was evaluated under field conditions in single-species and mixed-species plantings (with a nonfixing reference species, Eucalyptus X robusta J.E. Smith) between...

Estimating relative demand for wildlife: Conservation activity indicators

Science.gov (United States)

Gray, Gary G.; Larson, Joseph S.

1982-09-01

An alternative method of estimating relative demand among nonconsumptive uses of wildlife and among wildlife species is proposed. A demand intensity score (DIS), derived from the relative extent of an individual's involvement in outdoor recreation and conservation activities, is used as a weighting device to adjust the importance of preference rankings for wildlife uses and wildlife species relative to other members of a survey population. These adjusted preference rankings were considered to reflect relative demand levels (RDLs) for wildlife uses and for species by the survey population. This technique may be useful where it is not possible or desirable to estimate demand using traditional economic means. In one of the findings from a survey of municipal conservation commission members in Massachusetts, presented as an illustration of this methodology, poisonous snakes were ranked third in preference among five groups of reptiles. The relative demand level for poisonous snakes, however, was last among the five groups.

Monitoring strategy for eight amphibian species in French Guiana, South America.

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Elodie A Courtois

Full Text Available Although dramatic amphibian declines have been documented worldwide, only few of such events have been quantitatively documented for the tropical forests of South America. This is due partly to the fact that tropical amphibians are patchily distributed and difficult to detect. We tested three methods often used to monitor population trends in amphibian species in a remote lowland tropical forest of French Guiana. These methods are capture-mark-recapture (CMR, estimation of the number of calling males with repeated counts data and distance sampling, and rates of occupancy inferred by presence/absence data. We monitored eight diurnal, terrestrial amphibian species including five Dendrobatidae and three Bufonidae. We found that CMR, the most precise way of estimating population size, can be used only with two species in high density patches where the recapture rate is high enough. Only for one of the species (Dendrobates tinctorius, a low coefficient of variation (CV = 0.19 can be achieved with 15 to 20 capture events. For dendrobatid species with day-calling males, audio surveys yield a better probability of detection with only 8 audio surveys needed; quantitative estimates can be achieved by computing the number of calling males inferred from audio counts or distance sampling analysis. We therefore suggest that an efficient monitoring protocol for Neotropical amphibian species should include a combination of sighting and audio techniques, and we discuss the need of implementing a large-scale monitoring in order to provide a baseline for comparison with future changes.

An integrated data model to estimate spatiotemporal occupancy, abundance, and colonization dynamics

Science.gov (United States)

Williams, Perry J.; Hooten, Mevin B.; Womble, Jamie N.; Esslinger, George G.; Bower, Michael R.; Hefley, Trevor J.

2017-01-01

Ecological invasions and colonizations occur dynamically through space and time. Estimating the distribution and abundance of colonizing species is critical for efficient management or conservation. We describe a statistical framework for simultaneously estimating spatiotemporal occupancy and abundance dynamics of a colonizing species. Our method accounts for several issues that are common when modeling spatiotemporal ecological data including multiple levels of detection probability, multiple data sources, and computational limitations that occur when making fine-scale inference over a large spatiotemporal domain. We apply the model to estimate the colonization dynamics of sea otters (Enhydra lutris) in Glacier Bay, in southeastern Alaska.

TOTAL WOOD VOLUME ESTIMATION OF EUCALYPTUS SPECIES BY IMAGES OF LANDSAT SATELLITE

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Elias Fernando Berra

2012-12-01

Full Text Available http://dx.doi.org/10.5902/198050987566Models relating spectral answers with biophysical parameters aim estimate variables, like wood volume, without the necessity of frequent field measurements. The objective was to develop models to estimate wood volume by Landsat 5 TM images, supported by regional forest inventory data. The image was geo-referenced and converted to spectral reflectance. After, the images-index NDVI (Normalized Difference Vegetation Index and SR (Simple Ratio was generated. The reflectance values of the bands (TM1, TM2, TM3 e TM4 and of the indices (NDVI and SR was related with the wood volume. The biggest correlation with volume was with the NDVI and SR indices. The variables selection was made by Stepwise method, which returned three regression models as significant to explain the variation in volume. Finally, the best fitted model was selected (volume = -830,95 + 46,05 (SR + 107,47 (TM2, which was applied on the Landsat image where the pixels had started to represent the estimated volume in m³/ha on the Eucalyptus sp. production units. This model, significant at 95% confidence level, explains 68% of the wood volume variation.

SRKW summer prey - Prey species and stock specific consumption estimates for SRKW in their summer range

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National Oceanic and Atmospheric Administration, Department of Commerce — Southern Resident Killer Whales (SRKW) are listed as a Distinct Population Segment under the Endangered Species Act. Data concerning their prey species and stock...

Biodiversity estimates from different camera trap surveys: a case study from Osogovo Mt., Bulgaria

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Diana P. Zlatanova

2018-06-01

Full Text Available Inventorying mammal assemblages is vital for their conservation and management, especially when they include rare or endangered species. However, obtaining a correct estimation of the species diversity in a particular area can be challenging due to uncertainties regarding study design and duration. In this paper, we present the biodiversity estimates derived from three unrelated camera trap studies in Osogovo Mt., Bulgaria. They have different duration and positioning schemes of the camera trap locations: Study 1 – grid based, 34 days; Study 2 – random points based, 138 days; Study 3 – locations based on expert opinion, 1437 days. Utilising EstimateS, we compare a number of estimators (Shannon diversity index, Coleman rarefaction curve, ACE (Abundance-based Coverage Estimator, ICE (Incidence-based Coverage Estimator, Chao 1, Chao 2 and Jackknife estimators to the number of present and confirmed and/or potentially present mammals (excluding bats in the mountains. A total of 17 mammal species were registered in the three studies, which represents around 76% of the permanently present mammals in the mountain that inhabit its forested area and can be detected by a camera trap. The results point to some guidelines that can aid future camera trap research in temperate forested areas. A grid-based design works best for very short study periods (e.g. 10 days, while the opportunistic expert-based positioning scheme provides good results for longer studies (approx. a month. However, the grid-based design needs to be further tested for longer periods. Generally, the random points approach does not yield satisfactory results. In agreement with other studies, analysis based on the Jackknife procedure (Jack 2 appears to result in the best estimate of species richness. When performing camera trap studies, special care should be taken to minimise the number of unidentifiable photos and to take into account «trap-shy» individuals. The results from this

The burrowing characteristics of three common earthworm species

International Nuclear Information System (INIS)

Francis, G.S.; Tabley, F.J.; Butler, R.C.; Fraser, P.M.

2001-01-01

The burrowing characteristics of 3 common earthworm species were studied using X-ray computed tomography (CT) scanning in large cylinders (24.1 cm diameter) packed with topsoil (0-25 cm) and subsoil (25-50 cm) to representative field bulk density values and sown with ryegrass. Replicated cylinders (n 3), kept under constant moisture and temperature conditions, were inoculated with mature species of Lumbricus rubellus, Aporrectodea caliginosa, or Octolasion cyaneum earthworms at rates similar to their population density in the field. A non-inoculated, unreplicated control was also included. The number, biomass, and activity of the 3 species were then examined. X-ray CT scanning of large-diameter soil cylinders offers an alternative method for obtaining information on the burrowing characteristics of earthworms (Jegou et al. 1999). As this method is non-destructive, repeat measurements can be made and the use of large cylinders minimises edge effects. The objectives of this study were to: (i) assess the burrowing characteristics of 3 earthworm species (under artificial conditions) through measurement of 2-D porosity using X-ray CT scanning, (ii) estimate the extent of burrow backfilling between sequential scans, and (iii) estimate the continuity of earthworm burrows with depth through hydraulic conductivity measurements. Copyright (2001) CSIRO Publishing

Weed Growth Stage Estimator Using Deep Convolutional Neural Networks.

Science.gov (United States)

Teimouri, Nima; Dyrmann, Mads; Nielsen, Per Rydahl; Mathiassen, Solvejg Kopp; Somerville, Gayle J; Jørgensen, Rasmus Nyholm

2018-05-16

This study outlines a new method of automatically estimating weed species and growth stages (from cotyledon until eight leaves are visible) of in situ images covering 18 weed species or families. Images of weeds growing within a variety of crops were gathered across variable environmental conditions with regards to soil types, resolution and light settings. Then, 9649 of these images were used for training the computer, which automatically divided the weeds into nine growth classes. The performance of this proposed convolutional neural network approach was evaluated on a further set of 2516 images, which also varied in term of crop, soil type, image resolution and light conditions. The overall performance of this approach achieved a maximum accuracy of 78% for identifying Polygonum spp. and a minimum accuracy of 46% for blackgrass. In addition, it achieved an average 70% accuracy rate in estimating the number of leaves and 96% accuracy when accepting a deviation of two leaves. These results show that this new method of using deep convolutional neural networks has a relatively high ability to estimate early growth stages across a wide variety of weed species.

Limitations to estimating bacterial cross-speciestransmission using genetic and genomic markers: inferencesfrom simulation modeling

Science.gov (United States)

Julio Andre, Benavides; Cross, Paul C.; Luikart, Gordon; Scott, Creel

2014-01-01

Cross-species transmission (CST) of bacterial pathogens has major implications for human health, livestock, and wildlife management because it determines whether control actions in one species may have subsequent effects on other potential host species. The study of bacterial transmission has benefitted from methods measuring two types of genetic variation: variable number of tandem repeats (VNTRs) and single nucleotide polymorphisms (SNPs). However, it is unclear whether these data can distinguish between different epidemiological scenarios. We used a simulation model with two host species and known transmission rates (within and between species) to evaluate the utility of these markers for inferring CST. We found that CST estimates are biased for a wide range of parameters when based on VNTRs and a most parsimonious reconstructed phylogeny. However, estimations of CST rates lower than 5% can be achieved with relatively low bias using as low as 250 SNPs. CST estimates are sensitive to several parameters, including the number of mutations accumulated since introduction, stochasticity, the genetic difference of strains introduced, and the sampling effort. Our results suggest that, even with whole-genome sequences, unbiased estimates of CST will be difficult when sampling is limited, mutation rates are low, or for pathogens that were recently introduced.

The electric theories of J. Clerk Maxwell a historical and critical study

CERN Document Server

Duhem, Pierre Maurice Marie

2015-01-01

In this volume Pierre Duhem first gives an overview of 19th century electricity and magnetism. Next, he applies his keen historical, philosophical, and physical intuition to critiquing Maxwell's theories, especially his electromagnetic theory of light and the ad hoc introduction of displacement current, which he considers too much a product of the "esprit de géométrie" than the "esprit de finesse," as Pascal calls it. In this book, Duhem is guided by the principle that a theory that offers contradictions, even if the theory is posed by a genius, needs to be analysed and discussed until a c

La haine de l’Occident.

Directory of Open Access Journals (Sweden)

Francois Warin

2009-06-01

Full Text Available  « L’Occident est maintenant partout, en Occident et ailleurs, dans les structures et dans les esprits. » Ashis Nandy, L’ennemi intime « Tout est venu à l’Europe et tout en est venu. » Paul Valéry, La crise de l’esprit Contraste. Le vocable de postcolonialisme est équivoque et il est chez nous, il faut bien l’avouer, quasiment muet. Le premier paradoxe du postcolonialisme tient précisément à ce contraste : ce syntagme muet enveloppe un enjeu considérable puisqu’il ...

Parameter Estimations of Dynamic Energy Budget (DEB Model over the Life History of a Key Antarctic Species: The Antarctic Sea Star Odontaster validus Koehler, 1906.

Directory of Open Access Journals (Sweden)

Antonio Agüera

Full Text Available Marine organisms in Antarctica are adapted to an extreme ecosystem including extremely stable temperatures and strong seasonality due to changes in day length. It is now largely accepted that Southern Ocean organisms are particularly vulnerable to global warming with some regions already being challenged by a rapid increase of temperature. Climate change affects both the physical and biotic components of marine ecosystems and will have an impact on the distribution and population dynamics of Antarctic marine organisms. To predict and assess the effect of climate change on marine ecosystems a more comprehensive knowledge of the life history and physiology of key species is urgently needed. In this study we estimate the Dynamic Energy Budget (DEB model parameters for key benthic Antarctic species the sea star Odontaster validus using available information from literature and experiments. The DEB theory is unique in capturing the metabolic processes of an organism through its entire life cycle as a function of temperature and food availability. The DEB model allows for the inclusion of the different life history stages, and thus, becomes a tool that can be used to model lifetime feeding, growth, reproduction, and their responses to changes in biotic and abiotic conditions. The DEB model presented here includes the estimation of reproduction handling rules for the development of simultaneous oocyte cohorts within the gonad. Additionally it links the DEB model reserves to the pyloric caeca an organ whose function has long been ascribed to energy storage. Model parameters described a slowed down metabolism of long living animals that mature slowly. O. validus has a large reserve that-matching low maintenance costs- allow withstanding long periods of starvation. Gonad development is continuous and individual cohorts developed within the gonads grow in biomass following a power function of the age of the cohort. The DEB model developed here for O

Species Identification and Design Value Estimation of Wooden Members in Covered Bridges

Science.gov (United States)

Alex C. Wiedenhoeft; David E. Kretschmann

2014-01-01

Covered timber bridges are historic structures with unique aesthetic value. To preserve this value and maintain bridges in service, robust evaluation of their performance and safety is necessary. The strength of the timber found in covered bridges can vary considerably, not only because of age and condition, but also because of species and grade. For the practicing...

Impact of alternative metrics on estimates of extent of occurrence for extinction risk assessment.

Science.gov (United States)

Joppa, Lucas N; Butchart, Stuart H M; Hoffmann, Michael; Bachman, Steve P; Akçakaya, H Resit; Moat, Justin F; Böhm, Monika; Holland, Robert A; Newton, Adrian; Polidoro, Beth; Hughes, Adrian

2016-04-01

In International Union for Conservation of Nature (IUCN) Red List assessments, extent of occurrence (EOO) is a key measure of extinction risk. However, the way assessors estimate EOO from maps of species' distributions is inconsistent among assessments of different species and among major taxonomic groups. Assessors often estimate EOO from the area of mapped distribution, but these maps often exclude areas that are not habitat in idiosyncratic ways and are not created at the same spatial resolutions. We assessed the impact on extinction risk categories of applying different methods (minimum convex polygon, alpha hull) for estimating EOO for 21,763 species of mammals, birds, and amphibians. Overall, the percentage of threatened species requiring down listing to a lower category of threat (taking into account other Red List criteria under which they qualified) spanned 11-13% for all species combined (14-15% for mammals, 7-8% for birds, and 12-15% for amphibians). These down listings resulted from larger estimates of EOO and depended on the EOO calculation method. Using birds as an example, we found that 14% of threatened and near threatened species could require down listing based on the minimum convex polygon (MCP) approach, an approach that is now recommended by IUCN. Other metrics (such as alpha hull) had marginally smaller impacts. Our results suggest that uniformly applying the MCP approach may lead to a one-time down listing of hundreds of species but ultimately ensure consistency across assessments and realign the calculation of EOO with the theoretical basis on which the metric was founded. © 2015 Society for Conservation Biology.

Big and slow: phylogenetic estimates of molecular evolution in baleen whales (suborder mysticeti).

Science.gov (United States)

Jackson, J A; Baker, C S; Vant, M; Steel, D J; Medrano-González, L; Palumbi, S R

2009-11-01

Baleen whales are the largest animals that have ever lived. To develop an improved estimation of substitution rate for nuclear and mitochondrial DNA for this taxon, we implemented a relaxed-clock phylogenetic approach using three fossil calibration dates: the divergence between odontocetes and mysticetes approximately 34 million years ago (Ma), between the balaenids and balaenopterids approximately 28 Ma, and the time to most recent common ancestor within the Balaenopteridae approximately 12 Ma. We examined seven mitochondrial genomes, a large number of mitochondrial control region sequences (219 haplotypes for 465 bp) and nine nuclear introns representing five species of whales, within which multiple species-specific alleles were sequenced to account for within-species diversity (1-15 for each locus). The total data set represents >1.65 Mbp of mitogenome and nuclear genomic sequence. The estimated substitution rate for the humpback whale control region (3.9%/million years, My) was higher than previous estimates for baleen whales but slow relative to other mammal species with similar generation times (e.g., human-chimp mean rate > 20%/My). The mitogenomic third codon position rate was also slow relative to other mammals (mean estimate 1%/My compared with a mammalian average of 9.8%/My for the cytochrome b gene). The mean nuclear genomic substitution rate (0.05%/My) was substantially slower than average synonymous estimates for other mammals (0.21-0.37%/My across a range of studies). The nuclear and mitogenome rate estimates for baleen whales were thus roughly consistent with an 8- to 10-fold slowing due to a combination of large body size and long generation times. Surprisingly, despite the large data set of nuclear intron sequences, there was only weak and conflicting support for alternate hypotheses about the phylogeny of balaenopterid whales, suggesting that interspecies introgressions or a rapid radiation has obscured species relationships in the nuclear genome.

Estimating migratory connectivity of birds when re-encounter probabilities are heterogeneous

Science.gov (United States)

Cohen, Emily B.; Hostelter, Jeffrey A.; Royle, J. Andrew; Marra, Peter P.

2014-01-01

Understanding the biology and conducting effective conservation of migratory species requires an understanding of migratory connectivity – the geographic linkages of populations between stages of the annual cycle. Unfortunately, for most species, we are lacking such information. The North American Bird Banding Laboratory (BBL) houses an extensive database of marking, recaptures and recoveries, and such data could provide migratory connectivity information for many species. To date, however, few species have been analyzed for migratory connectivity largely because heterogeneous re-encounter probabilities make interpretation problematic. We accounted for regional variation in re-encounter probabilities by borrowing information across species and by using effort covariates on recapture and recovery probabilities in a multistate capture–recapture and recovery model. The effort covariates were derived from recaptures and recoveries of species within the same regions. We estimated the migratory connectivity for three tern species breeding in North America and over-wintering in the tropics, common (Sterna hirundo), roseate (Sterna dougallii), and Caspian terns (Hydroprogne caspia). For western breeding terns, model-derived estimates of migratory connectivity differed considerably from those derived directly from the proportions of re-encounters. Conversely, for eastern breeding terns, estimates were merely refined by the inclusion of re-encounter probabilities. In general, eastern breeding terns were strongly connected to eastern South America, and western breeding terns were strongly linked to the more western parts of the nonbreeding range under both models. Through simulation, we found this approach is likely useful for many species in the BBL database, although precision improved with higher re-encounter probabilities and stronger migratory connectivity. We describe an approach to deal with the inherent biases in BBL banding and re-encounter data to demonstrate

Estimating tree species diversity in the savannah using NDVI and woody canopy cover

CSIR Research Space (South Africa)

Madonsela, Sabelo

2018-04-01

Full Text Available Remote sensing applications in biodiversity research often rely on the establishment of relationships between spectral information from the image and tree species diversity measured in the field. Most studies have used normalized difference...

Multifaceted, cross-generational costs of hybridization in sibling Drosophila species.

Directory of Open Access Journals (Sweden)

Erin M Myers

Full Text Available Maladaptive hybridization, as determined by the pattern and intensity of selection against hybrid individuals, is an important factor contributing to the evolution of prezygotic reproductive isolation. To identify the consequences of hybridization between Drosophila pseudoobscura and D. persimilis, we estimated multiple fitness components for F1 hybrids and backcross progeny and used these to compare the relative fitness of parental species and their hybrids across two generations. We document many sources of intrinsic (developmental and extrinsic (ecological selection that dramatically increase the fitness costs of hybridization beyond the well-documented F1 male sterility in this model system. Our results indicate that the cost of hybridization accrues over multiple generations and reinforcement in this system is driven by selection against hybridization above and beyond the cost of hybrid male sterility; we estimate a fitness loss of >95% relative to the parental species across two generations of hybridization. Our findings demonstrate the importance of estimating hybridization costs using multiple fitness measures from multiple generations in an ecologically relevant context; so doing can reveal intense postzygotic selection against hybridization and thus, an enhanced role for reinforcement in the evolution of populations and diversification of species.

Multifaceted, cross-generational costs of hybridization in sibling Drosophila species.

Science.gov (United States)

Myers, Erin M; Harwell, Tiffany I; Yale, Elizabeth L; Lamb, Abigail M; Frankino, W Anthony

2013-01-01

Maladaptive hybridization, as determined by the pattern and intensity of selection against hybrid individuals, is an important factor contributing to the evolution of prezygotic reproductive isolation. To identify the consequences of hybridization between Drosophila pseudoobscura and D. persimilis, we estimated multiple fitness components for F1 hybrids and backcross progeny and used these to compare the relative fitness of parental species and their hybrids across two generations. We document many sources of intrinsic (developmental) and extrinsic (ecological) selection that dramatically increase the fitness costs of hybridization beyond the well-documented F1 male sterility in this model system. Our results indicate that the cost of hybridization accrues over multiple generations and reinforcement in this system is driven by selection against hybridization above and beyond the cost of hybrid male sterility; we estimate a fitness loss of >95% relative to the parental species across two generations of hybridization. Our findings demonstrate the importance of estimating hybridization costs using multiple fitness measures from multiple generations in an ecologically relevant context; so doing can reveal intense postzygotic selection against hybridization and thus, an enhanced role for reinforcement in the evolution of populations and diversification of species.

Establishing endangered species recovery criteria using predictive simulation modeling

Science.gov (United States)

McGowan, Conor P.; Catlin, Daniel H.; Shaffer, Terry L.; Gratto-Trevor, Cheri L.; Aron, Carol

2014-01-01

Listing a species under the Endangered Species Act (ESA) and developing a recovery plan requires U.S. Fish and Wildlife Service to establish specific and measurable criteria for delisting. Generally, species are listed because they face (or are perceived to face) elevated risk of extinction due to issues such as habitat loss, invasive species, or other factors. Recovery plans identify recovery criteria that reduce extinction risk to an acceptable level. It logically follows that the recovery criteria, the defined conditions for removing a species from ESA protections, need to be closely related to extinction risk. Extinction probability is a population parameter estimated with a model that uses current demographic information to project the population into the future over a number of replicates, calculating the proportion of replicated populations that go extinct. We simulated extinction probabilities of piping plovers in the Great Plains and estimated the relationship between extinction probability and various demographic parameters. We tested the fit of regression models linking initial abundance, productivity, or population growth rate to extinction risk, and then, using the regression parameter estimates, determined the conditions required to reduce extinction probability to some pre-defined acceptable threshold. Binomial regression models with mean population growth rate and the natural log of initial abundance were the best predictors of extinction probability 50 years into the future. For example, based on our regression models, an initial abundance of approximately 2400 females with an expected mean population growth rate of 1.0 will limit extinction risk for piping plovers in the Great Plains to less than 0.048. Our method provides a straightforward way of developing specific and measurable recovery criteria linked directly to the core issue of extinction risk. Published by Elsevier Ltd.

Modeling Ecosystem Services for Park Trees: Sensitivity of i-Tree Eco Simulations to Light Exposure and Tree Species Classification

Directory of Open Access Journals (Sweden)

Rocco Pace

2018-02-01

Full Text Available Ecosystem modeling can help decision making regarding planting of urban trees for climate change mitigation and air pollution reduction. Algorithms and models that link the properties of plant functional types, species groups, or single species to their impact on specific ecosystem services have been developed. However, these models require a considerable effort for initialization that is inherently related to uncertainties originating from the high diversity of plant species in urban areas. We therefore suggest a new automated method to be used with the i-Tree Eco model to derive light competition for individual trees and investigate the importance of this property. Since competition depends also on the species, which is difficult to determine from increasingly used remote sensing methodologies, we also investigate the impact of uncertain tree species classification on the ecosystem services by comparing a species-specific inventory determined by field observation with a genus-specific categorization and a model initialization for the dominant deciduous and evergreen species only. Our results show how the simulation of competition affects the determination of carbon sequestration, leaf area, and related ecosystem services and that the proposed method provides a tool for improving estimations. Misclassifications of tree species can lead to large deviations in estimates of ecosystem impacts, particularly concerning biogenic volatile compound emissions. In our test case, monoterpene emissions almost doubled and isoprene emissions decreased to less than 10% when species were estimated to belong only to either two groups instead of being determined by species or genus. It is discussed that this uncertainty of emission estimates propagates further uncertainty in the estimation of potential ozone formation. Overall, we show the importance of using an individual light competition approach and explicitly parameterizing all ecosystem functions at the

Evaluation of nutritional value some forage species available in Iran ...

African Journals Online (AJOL)

Novin

2012-07-17

Jul 17, 2012 ... and chemical composition of forage species was estimated. MATERIALS AND METHODS ... head per day at 8.00 a.m. and 6.00 p.m. Forage samples (2 g DM with 2 mm screen ) were weighed into nylon bags ..... methods to study the kinetics of degradation of forage species, instead of the in situ technique, ...

Predicting geographic distributions of Phacellodomus species (Aves: Furnariidae in South America based on ecological niche modeling

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Maria da Salete Gurgel Costa

2014-08-01

Full Text Available Phacellodomus Reichenbach, 1853, comprises nine species of Furnariids that occur in South America in open and generally dry areas. This study estimated the geographic distributions of Phacellodomus species in South America by ecological niche modeling. Applying maximum entropy method, models were produced for eight species based on six climatic variables and 949 occurrence records. Since highest climatic suitability for Phacellodomus species has been estimated in open and dry areas, the Amazon rainforest areas are not very suitable for these species. Annual precipitation and minimum temperature of the coldest month are the variables that most influence the models. Phacellodomus species occurred in 35 ecoregions of South America. Chaco and Uruguayan savannas were the ecoregions with the highest number of species. Despite the overall connection of Phacellodomus species with dry areas, species such as P. ruber, P. rufifrons, P. ferrugineigula and P. erythrophthalmus occurred in wet forests and wetland ecoregions.

Accelerated modern human–induced species losses: Entering the sixth mass extinction

Science.gov (United States)

Ceballos, Gerardo; Ehrlich, Paul R.; Barnosky, Anthony D.; García, Andrés; Pringle, Robert M.; Palmer, Todd M.

2015-01-01

The oft-repeated claim that Earth’s biota is entering a sixth “mass extinction” depends on clearly demonstrating that current extinction rates are far above the “background” rates prevailing between the five previous mass extinctions. Earlier estimates of extinction rates have been criticized for using assumptions that might overestimate the severity of the extinction crisis. We assess, using extremely conservative assumptions, whether human activities are causing a mass extinction. First, we use a recent estimate of a background rate of 2 mammal extinctions per 10,000 species per 100 years (that is, 2 E/MSY), which is twice as high as widely used previous estimates. We then compare this rate with the current rate of mammal and vertebrate extinctions. The latter is conservatively low because listing a species as extinct requires meeting stringent criteria. Even under our assumptions, which would tend to minimize evidence of an incipient mass extinction, the average rate of vertebrate species loss over the last century is up to 100 times higher than the background rate. Under the 2 E/MSY background rate, the number of species that have gone extinct in the last century would have taken, depending on the vertebrate taxon, between 800 and 10,000 years to disappear. These estimates reveal an exceptionally rapid loss of biodiversity over the last few centuries, indicating that a sixth mass extinction is already under way. Averting a dramatic decay of biodiversity and the subsequent loss of ecosystem services is still possible through intensified conservation efforts, but that window of opportunity is rapidly closing. PMID:26601195

Accelerated modern human-induced species losses: Entering the sixth mass extinction.

Science.gov (United States)

Ceballos, Gerardo; Ehrlich, Paul R; Barnosky, Anthony D; García, Andrés; Pringle, Robert M; Palmer, Todd M

2015-06-01

The oft-repeated claim that Earth's biota is entering a sixth "mass extinction" depends on clearly demonstrating that current extinction rates are far above the "background" rates prevailing between the five previous mass extinctions. Earlier estimates of extinction rates have been criticized for using assumptions that might overestimate the severity of the extinction crisis. We assess, using extremely conservative assumptions, whether human activities are causing a mass extinction. First, we use a recent estimate of a background rate of 2 mammal extinctions per 10,000 species per 100 years (that is, 2 E/MSY), which is twice as high as widely used previous estimates. We then compare this rate with the current rate of mammal and vertebrate extinctions. The latter is conservatively low because listing a species as extinct requires meeting stringent criteria. Even under our assumptions, which would tend to minimize evidence of an incipient mass extinction, the average rate of vertebrate species loss over the last century is up to 100 times higher than the background rate. Under the 2 E/MSY background rate, the number of species that have gone extinct in the last century would have taken, depending on the vertebrate taxon, between 800 and 10,000 years to disappear. These estimates reveal an exceptionally rapid loss of biodiversity over the last few centuries, indicating that a sixth mass extinction is already under way. Averting a dramatic decay of biodiversity and the subsequent loss of ecosystem services is still possible through intensified conservation efforts, but that window of opportunity is rapidly closing.

Nonlinear ionic transport through microstructured solid electrolytes: homogenization estimates

Science.gov (United States)

Curto Sillamoni, Ignacio J.; Idiart, Martín I.

2016-10-01

We consider the transport of multiple ionic species by diffusion and migration through microstructured solid electrolytes in the presence of strong electric fields. The assumed constitutive relations for the constituent phases follow from convex energy and dissipation potentials which guarantee thermodynamic consistency. The effective response is heuristically deduced from a multi-scale convergence analysis of the relevant field equations. The resulting homogenized response involves an effective dissipation potential per species. Each potential is mathematically akin to that of a standard nonlinear heterogeneous conductor. A ‘linear-comparison’ homogenization technique is then used to generate estimates for these nonlinear potentials in terms of available estimates for corresponding linear conductors. By way of example, use is made of the Maxwell-Garnett and effective-medium linear approximations to generate estimates for two-phase systems with power-law dissipation. Explicit formulas are given for some limiting cases. In the case of threshold-type behavior, the estimates exhibit non-analytical dilute limits and seem to be consistent with fields localized in low energy paths.

Counting Cats: Spatially Explicit Population Estimates of Cheetah (Acinonyx jubatus Using Unstructured Sampling Data.

Directory of Open Access Journals (Sweden)

Femke Broekhuis

Full Text Available Many ecological theories and species conservation programmes rely on accurate estimates of population density. Accurate density estimation, especially for species facing rapid declines, requires the application of rigorous field and analytical methods. However, obtaining accurate density estimates of carnivores can be challenging as carnivores naturally exist at relatively low densities and are often elusive and wide-ranging. In this study, we employ an unstructured spatial sampling field design along with a Bayesian sex-specific spatially explicit capture-recapture (SECR analysis, to provide the first rigorous population density estimates of cheetahs (Acinonyx jubatus in the Maasai Mara, Kenya. We estimate adult cheetah density to be between 1.28 ± 0.315 and 1.34 ± 0.337 individuals/100km2 across four candidate models specified in our analysis. Our spatially explicit approach revealed 'hotspots' of cheetah density, highlighting that cheetah are distributed heterogeneously across the landscape. The SECR models incorporated a movement range parameter which indicated that male cheetah moved four times as much as females, possibly because female movement was restricted by their reproductive status and/or the spatial distribution of prey. We show that SECR can be used for spatially unstructured data to successfully characterise the spatial distribution of a low density species and also estimate population density when sample size is small. Our sampling and modelling framework will help determine spatial and temporal variation in cheetah densities, providing a foundation for their conservation and management. Based on our results we encourage other researchers to adopt a similar approach in estimating densities of individually recognisable species.

Counting Cats: Spatially Explicit Population Estimates of Cheetah (Acinonyx jubatus) Using Unstructured Sampling Data.

Science.gov (United States)

Broekhuis, Femke; Gopalaswamy, Arjun M

2016-01-01

Many ecological theories and species conservation programmes rely on accurate estimates of population density. Accurate density estimation, especially for species facing rapid declines, requires the application of rigorous field and analytical methods. However, obtaining accurate density estimates of carnivores can be challenging as carnivores naturally exist at relatively low densities and are often elusive and wide-ranging. In this study, we employ an unstructured spatial sampling field design along with a Bayesian sex-specific spatially explicit capture-recapture (SECR) analysis, to provide the first rigorous population density estimates of cheetahs (Acinonyx jubatus) in the Maasai Mara, Kenya. We estimate adult cheetah density to be between 1.28 ± 0.315 and 1.34 ± 0.337 individuals/100km2 across four candidate models specified in our analysis. Our spatially explicit approach revealed 'hotspots' of cheetah density, highlighting that cheetah are distributed heterogeneously across the landscape. The SECR models incorporated a movement range parameter which indicated that male cheetah moved four times as much as females, possibly because female movement was restricted by their reproductive status and/or the spatial distribution of prey. We show that SECR can be used for spatially unstructured data to successfully characterise the spatial distribution of a low density species and also estimate population density when sample size is small. Our sampling and modelling framework will help determine spatial and temporal variation in cheetah densities, providing a foundation for their conservation and management. Based on our results we encourage other researchers to adopt a similar approach in estimating densities of individually recognisable species.

Biological nitrogen fixation in Crotalaria species estimated using the 15N isotope dilution method

International Nuclear Information System (INIS)

Samba, R.T.; Neyra, M.; Gueye, M.; Sylla, S.N.; Ndoye, I.; Dreyfus, B.

2002-01-01

Growing in Senegal by using 15 N direct isotope dilution technique. Two non-fixing plants, Senna obtusifolia and Senna occidentalis served as reference plants. The amount of nitrogen fixed two months after planting was obtained using the average of the two reference plants. The atom % 15 N excess in the Crotalaria species was significantly lower than that of the reference plants, indicating that significant nitrogen fixation occurred in the three plants. Significant differences were observed between the Crotalaria species; C. ochroleuca yielded more dry matter weight and total nitrogen than did C. perrottetti and C. retusa. The % nitrogen derived from atmosphere (%Ndfa) in leaves and stems was also higher in C. ochroleuca. There was no significant difference in %Ndfa in the whole plant between the three Crotalaria species (47% to 53%). In contrast, interspecific variability was observed based on the %Ndfa. C. ochroleuca significantly exhibited the higher amount of total nitrogen fixed, equivalent to 83 kg of nitrogen fixed per hectare. Based on these data, it was concluded that C. ochroleuca could be used in multiple cropping systems in Senegal for making more nitrogen available to other plants. (author)

Temperature effects on gametophyte life-history traits and geographic distribution of two cryptic kelp species.

Directory of Open Access Journals (Sweden)

L Valeria Oppliger

Full Text Available A major determinant of the geographic distribution of a species is expected to be its physiological response to changing abiotic variables over its range. The range of a species often corresponds to the geographic extent of temperature regimes the organism can physiologically tolerate. Many species have very distinct life history stages that may exhibit different responses to environmental factors. In this study we emphasized the critical role of the haploid microscopic stage (gametophyte of the life cycle to explain the difference of edge distribution of two related kelp species. Lessonia nigrescens was recently identified as two cryptic species occurring in parapatry along the Chilean coast: one located north and the other south of a biogeographic boundary at latitude 29-30°S. Six life history traits from microscopic stages were identified and estimated under five treatments of temperature in eight locations distributed along the Chilean coast in order to (1 estimate the role of temperature in the present distribution of the two cryptic L. nigrescens species, (2 compare marginal populations to central populations of the two cryptic species. In addition, we created a periodic matrix model to estimate the population growth rate (λ at the five temperature treatments. Differential tolerance to temperature was demonstrated between the two species, with the gametophytes of the Northern species being more tolerant to higher temperatures than gametophytes from the south. Second, the two species exhibited different life history strategies with a shorter haploid phase in the Northern species contrasted with considerable vegetative growth in the Southern species haploid stage. These results provide strong ecological evidence for the differentiation process of the two cryptic species and show local adaptation of the life cycle at the range limits of the distribution. Ecological and evolutionary implications of these findings are discussed.

Identifying ambassador species for conservation marketing

Directory of Open Access Journals (Sweden)

E.A. Macdonald

2017-10-01

Full Text Available Conservation relies heavily on external funding, much of it from a supportive public. Therefore it is important to know which species are most likely to catalyse such funding. Whilst previous work has looked at the physical attributes that contribute to a species' appeal, no previous studies have tried to examine the extent to which a species' sympatriots might contribute to it's potential as flagship for wider conservation. Therefore, here we estimate ‘flexibility’ and ‘appeal’ scores for all terrestrial mammals (n = 4320 and identify which of these might serve as ambassadors (defined as both highly appealing and flexible. Relatively few mammals (between 240 and 331 emerged as ambassadors, with carnivores featuring heavily in this group (representing 5% of terrestrial mammals but 39% of ambassadors. ‘Top ambassadors’ were defined as those with both flexibility and appeal scores greater than 1 standard deviation above the mean. Less than a quarter of the 20 most endangered and evolutionary distinct species in this study were classed as ambassadors, highlighting the need for surrogate species to catalyse conservation effort in areas with such priority species. This is the first global analysis bringing together flexibility and appeal for all terrestrial mammals, and demonstrates an approach for determining how best to market species in order to achieve maximal conservation gain in a world with urgent conservation need but limited resources.

Estimates of cetacean abundance in European Atlantic waters in summer

OpenAIRE

Hammond, P.S. (Phil) et al. (incl. Santos, M.B. (Maria Begoña)

2017-01-01

This report summarises design-based estimates of abundance for those cetacean species for which sufficient data were obtained during SCANS-III: harbour porpoise, bottlenose dolphin, Risso’s dolphin, white-beaked dolphin, white-sided dolphin, common dolphin, striped dolphin, pilot whale, all beaked whale species combined, sperm whale, minke whale and fin whale.

Global assessment of the effects of terrestrial acidification on plant species richness

International Nuclear Information System (INIS)

Azevedo, Ligia B.; Zelm, Rosalie van; Hendriks, A. Jan; Bobbink, Roland; Huijbregts, Mark A.J.

2013-01-01

This study estimates the potential losses of vascular plant species richness due to terrestrial acidification for different world's biomes. We used empirical occurrence data of 2409 species from 140 studies and estimated the relative species richness – pH response curves using logistic regressions. The regressions were then used to quantify the fraction of species that are potentially lost due to soil pH changes. Although we found considerable variability within biomes, out results show that the pH at which species richness was maximized was found to be the lowest in (sub)tropical forests (pH = 4.1) and the highest in deserts (pH = 7.4). We also found that (sub)tropical moist forests are highly sensitive to decreases of in soil pH below 4.1. This study can be coupled with existing atmospheric deposition models to quantify the risk of species richness loss following soil acidification. Highlights: ► We compare the sensitivity of four biomes to soil acidification. ► We develop logistic regressions using observational field data. ► Sub(tropical) moist forests are highly affected by pH decreases. ► Logistic regressions can be linked to global scale atmospheric and soil fate models. -- Relationships of potential species richness loss along a soil pH gradient are proposed

Teel infoühiskonda - sedakorda Euroopa Liidu abiga / Katre Talviste, Anne Märdimäe

Index Scriptorium Estoniae

Talviste, Katre

1997-01-01

Euroopa Liidu infotehnika arendusprogrammid: ACTS - arenenud sidetehnika ja teenused, ESPRIT - infotehnika, TELEMATICS APPLICATIONS - telemaatikarakendused, FEMIRC Eesti (EL'i Innovatsiooniinfo keskus Eestis)

Growth strategies of tropical tree species: disentangling light and size effects.

Directory of Open Access Journals (Sweden)

Nadja Rüger

Full Text Available An understanding of the drivers of tree growth at the species level is required to predict likely changes of carbon stocks and biodiversity when environmental conditions change. Especially in species-rich tropical forests, it is largely unknown how species differ in their response of growth to resource availability and individual size. We use a hierarchical bayesian approach to quantify the impact of light availability and tree diameter on growth of 274 woody species in a 50-ha long-term forest census plot in Barro Colorado Island, Panama. Light reaching each individual tree was estimated from yearly vertical censuses of canopy density. The hierarchical bayesian approach allowed accounting for different sources of error, such as negative growth observations, and including rare species correctly weighted by their abundance. All species grew faster at higher light. Exponents of a power function relating growth to light were mostly between 0 and 1. This indicates that nearly all species exhibit a decelerating increase of growth with light. In contrast, estimated growth rates at standardized conditions (5 cm dbh, 5% light varied over a 9-fold range and reflect strong growth-strategy differentiation between the species. As a consequence, growth rankings of the species at low (2% and high light (20% were highly correlated. Rare species tended to grow faster and showed a greater sensitivity to light than abundant species. Overall, tree size was less important for growth than light and about half the species were predicted to grow faster in diameter when bigger or smaller, respectively. Together light availability and tree diameter only explained on average 12% of the variation in growth rates. Thus, other factors such as soil characteristics, herbivory, or pathogens may contribute considerably to shaping tree growth in the tropics.

Phyllosticta species on citrus: Risk estimation of resistance to QoI fungicides and identification of species with cytochrome b gene sequences

NARCIS (Netherlands)

Stammler, G.; Schutte, G.C.; Speakman, J.; Miessner, S.; Crous, P.W.

2013-01-01

Isolates of three fungal species associated with citrus, Phyllosticta citricarpa, Phyllosticta citriasiana and Phyllosticta capitalensis, collected from different citrus growing countries of the world, were investigated for their sensitivities to the QoI fungicides pyraclostrobin and azoxystrobin.

Above Ground Carbon Stock Estimates of Mangrove Forest Using Worldview-2 Imagery in Teluk Benoa, Bali

Science.gov (United States)

Candra, E. D.; Hartono; Wicaksono, P.

2016-11-01

Mangrove forests have a role as an absorbent and a carbon sink to a reduction CO2 in the atmosphere. Based on the previous studies found that mangrove forests have the ability to sequestering carbon through photosynthesis and carbon burial of sediment effectively. The value and distribution of carbon stock are important to understand through remote sensing technology. In this study, will estimate the carbon stock using WorldView-2 imagery with and without distinction mangrove species. Worldview-2 is a high resolution image with 2 meters spatial resolution and eight spectral bands. Worldview-2 potential to estimate carbon stock in detail. Vegetation indices such as DVI (Difference Vegetation Index), EVI (Enhanced Vegetation Index), and MRE-SR (Modified Red Edge-Simple Ratio) and field data were modeled to determine the best vegetation indices to estimate carbon stocks. Carbon stock estimated by allometric equation approach specific to each species of mangrove. Worldview-2 imagery to map mangrove species with an accuracy of 80.95%. Total carbon stock estimation results in the study area of 35.349,87 tons of dominant species Rhizophora apiculata, Rhizophora mucronata and Sonneratia alba.

Ecological interactions in Aedes species on Reunion Island.

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Bagny Beilhe, L; Delatte, H; Juliano, S A; Fontenille, D; Quilici, S

2013-12-01

Two invasive, container-breeding mosquito species, Aedes aegypti (Stegomyia aegypti) and Aedes albopictus (Stegomyia albopicta) (Diptera: Culicidae), have different distribution patterns on Reunion Island. Aedes albopictus occurs in all areas and Ae. aegypti colonizes only some restricted areas already occupied by Ae. albopictus. This study investigates the abiotic and biotic ecological mechanisms that determine the distribution of Aedes species on Reunion Island. Life history traits (duration of immature stages, survivorship, fecundity, estimated finite rate of increase) in Ae. aegypti and Ae. albopictus were compared at different temperatures. These fitness measures were characterized in both species in response to competitive interactions among larvae. Aedes aegypti was drastically affected by temperature, performing well only at around 25 °C, at which it achieved its highest survivorship and greatest estimated rate of increase. The narrow distribution of this species in the field on Reunion Island may thus relate to its poor ability to cope with unfavourable temperatures. Aedes aegypti was also more negatively affected by high population densities and to some extent by interactions with Ae. albopictus, particularly in the context of limited food supplies. Aedes albopictus exhibited better population performance across a range of environmental conditions. Its ecological plasticity and its superior competitive ability relative to its congener may further enhance its invasion success on Reunion Island. © 2012 The Royal Entomological Society.

Comparative Transcriptomics Among Four White Pine Species

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Ethan A. G. Baker

2018-05-01

Full Text Available Conifers are the dominant plant species throughout the high latitude boreal forests as well as some lower latitude temperate forests of North America, Europe, and Asia. As such, they play an integral economic and ecological role across much of the world. This study focused on the characterization of needle transcriptomes from four ecologically important and understudied North American white pines within the Pinus subgenus Strobus. The populations of many Strobus species are challenged by native and introduced pathogens, native insects, and abiotic factors. RNA from the needles of western white pine (Pinus monticola, limber pine (Pinus flexilis, whitebark pine (Pinus albicaulis, and sugar pine (Pinus lambertiana was sampled, Illumina short read sequenced, and de novo assembled. The assembled transcripts and their subsequent structural and functional annotations were processed through custom pipelines to contend with the challenges of non-model organism transcriptome validation. Orthologous gene family analysis of over 58,000 translated transcripts, implemented through Tribe-MCL, estimated the shared and unique gene space among the four species. This revealed 2025 conserved gene families, of which 408 were aligned to estimate levels of divergence and reveal patterns of selection. Specific candidate genes previously associated with drought tolerance and white pine blister rust resistance in conifers were investigated.

Advances in Time Estimation Methods for Molecular Data.

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Kumar, Sudhir; Hedges, S Blair

2016-04-01

Molecular dating has become central to placing a temporal dimension on the tree of life. Methods for estimating divergence times have been developed for over 50 years, beginning with the proposal of molecular clock in 1962. We categorize the chronological development of these methods into four generations based on the timing of their origin. In the first generation approaches (1960s-1980s), a strict molecular clock was assumed to date divergences. In the second generation approaches (1990s), the equality of evolutionary rates between species was first tested and then a strict molecular clock applied to estimate divergence times. The third generation approaches (since ∼2000) account for differences in evolutionary rates across the tree by using a statistical model, obviating the need to assume a clock or to test the equality of evolutionary rates among species. Bayesian methods in the third generation require a specific or uniform prior on the speciation-process and enable the inclusion of uncertainty in clock calibrations. The fourth generation approaches (since 2012) allow rates to vary from branch to branch, but do not need prior selection of a statistical model to describe the rate variation or the specification of speciation model. With high accuracy, comparable to Bayesian approaches, and speeds that are orders of magnitude faster, fourth generation methods are able to produce reliable timetrees of thousands of species using genome scale data. We found that early time estimates from second generation studies are similar to those of third and fourth generation studies, indicating that methodological advances have not fundamentally altered the timetree of life, but rather have facilitated time estimation by enabling the inclusion of more species. Nonetheless, we feel an urgent need for testing the accuracy and precision of third and fourth generation methods, including their robustness to misspecification of priors in the analysis of large phylogenies and data

Conservation of avian diversity in the Sierra Nevada: moving beyond a single-species management focus.

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Angela M White

Full Text Available As a result of past practices, many of the dry coniferous forests of the western United States contain dense, even-aged stands with uncharacteristically high levels of litter and downed woody debris. These changes to the forest have received considerable attention as they elevate concerns regarding the outcome of wildland fire. However, attempts to reduce biomass through fuel reduction (i.e., thinning of trees are often opposed by public interest groups whose objectives include maintaining habitat for species of concern such as the spotted owl, Strix occidentalis, the northern goshawk, Accipiter gentilis, and the Pacific fisher, Martes pennanti. Whether protection of these upper-trophic level species confers adequate conservation of avian forest diversity is unknown.We use a multi-species occurrence model to estimate the habitat associations of 47 avian species detected at 742 sampling locations within an 880-km(2 area in the Sierra Nevada. Our approach, which accounts for variations in detectability of species, estimates occurrence probabilities of all species in a community by linking species occurrence models into one hierarchical community model, thus improving inferences on all species, especially those that are rare or observed infrequently. We address how the avian community is influenced by covariates related to canopy cover, tree size and shrub cover while accounting for the impacts of abiotic variables known to affect species distributions.Environmental parameters estimated through our approach emphasize the importance of within and between stand-level heterogeneity in meeting biodiversity objectives and suggests that many avian species would increase under more open canopy habitat conditions than those favored by umbrella species of high conservation concern. Our results suggest that a more integrated approach that emphasizes maintaining a diversity of habitats across environmental gradients and minimizing urbanization may have a

Conservation of avian diversity in the Sierra Nevada: moving beyond a single-species management focus

Science.gov (United States)

White, Angela M.; Zipkin, Elise F.; Manley, Patricia N.; Schlesinger, Matthew D.

2013-01-01

Background: As a result of past practices, many of the dry coniferous forests of the western United States contain dense, even-aged stands with uncharacteristically high levels of litter and downed woody debris. These changes to the forest have received considerable attention as they elevate concerns regarding the outcome of wildland fire. However, attempts to reduce biomass through fuel reduction (i.e., thinning of trees) are often opposed by public interest groups whose objectives include maintaining habitat for species of concern such as the spotted owl, Strix occidentalis, the northern goshawk, Accipiter gentilis, and the Pacific fisher, Martes pennanti. Whether protection of these upper-trophic level species confers adequate conservation of avian forest diversity is unknown. Methodology and Principal Findings: We use a multi-species occurrence model to estimate the habitat associations of 47 avian species detected at 742 sampling locations within an 880-km2 area in the Sierra Nevada. Our approach, which accounts for variations in detectability of species, estimates occurrence probabilities of all species in a community by linking species occurrence models into one hierarchical community model, thus improving inferences on all species, especially those that are rare or observed infrequently. We address how the avian community is influenced by covariates related to canopy cover, tree size and shrub cover while accounting for the impacts of abiotic variables known to affect species distributions. Conclusions and Significance: Environmental parameters estimated through our approach emphasize the importance of within and between stand-level heterogeneity in meeting biodiversity objectives and suggests that many avian species would increase under more open canopy habitat conditions than those favored by umbrella species of high conservation concern. Our results suggest that a more integrated approach that emphasizes maintaining a diversity of habitats across

Detectability in Audio-Visual Surveys of Tropical Rainforest Birds: The Influence of Species, Weather and Habitat Characteristics