Configuration interaction calculations for the region of 76Ge

Science.gov (United States)

Brown, Alex

2017-09-01

I will present a short history of the configuration interaction Hamiltonians that have been developed for the (0f5 / 2 , 1p3 / 2 , 1p1 / 2 , 0g9 / 2) (jj 44) model space. This model space is appropriate for the region of nuclei bounded by the nickel isotopes for Z = 28 and the isotones with N = 50 . I will discuss results for the double-beta decay of 76Ge that lies in the jj 44 region. I will show results for the structure of nuclei around 76Ge for some selected data from gamma decay, Gamow-Teller beta decay, charge-exchange reactions, one-nucleon transfer reactions, and two-nucleon transfer reactions. This work was supported by NSF Grant PHY-1404442.

BNL Direct Wind Superconducting Magnets

Energy Technology Data Exchange (ETDEWEB)

Parker, B.; Anerella, M.; Escallier, J.; Ghosh, A.; Jain, A.; Marone, A.; Muratore, A.; Wanderer, P.

2011-09-12

BNL developed Direct Wind magnet technology is used to create a variety of complex multi-functional multi-layer superconducting coil structures without the need for creating custom production tooling and fixturing for each new project. Our Direct Wind process naturally integrates prestress into the coil structure so external coil collars and yokes are not needed; the final coil package transverse size can then be very compact. Direct Wind magnets are produced with very good field quality via corrections applied during the course of coil winding. The HERA-II and BEPC-II Interaction Region (IR) magnet, J-PARC corrector and Alpha antihydrogen magnetic trap magnets and our BTeV corrector magnet design are discussed here along with a full length ILC IR prototype magnet presently in production and the coils that were wound for an ATF2 upgrade at KEK. A new IR septum magnet design concept for a 6.2 T combined-function IR magnet for eRHIC, a future RHIC upgrade, is introduced here.

Interaction region for crab waist scheme of the Future Electron-Positron Collider (CERN)

CERN Document Server

Bogomyagkov, A

2015-01-01

Design study in CERN of the accelerator that would fit 80-100 km tunnel called Future Circular Colliders (FCC) includes high-luminosity $e^+ e^−$ collider (FCC-ee) with center-of-mass energy from 90 to 350 GeV to study Higgs boson properties and perform precise measurements at the electroweak scale [1–3]. Crab waist interaction region provides collisions with luminosity higher than 2 × 10$^{36}$ cm$^{−2}$ sec$^{−1}$ at beam energy of 45 GeV. The small values of the beta functions at the interaction point and distant final focus lenses are the reasons for high nonlinear chromaticity limiting energy acceptance of the whole ring. The paper describes interaction region for crab waist collision scheme in the FCC-ee, principles of tuning the chromaticity correction section in order to provide large energy acceptance.

Interaction region design driven by energy deposition

Science.gov (United States)

Martin, Roman; Besana, Maria Ilaria; Cerutti, Francesco; Langner, Andy; Tomás, Rogelio; Cruz-Alaniz, Emilia; Dalena, Barbara

2017-08-01

The European Strategy Group for High Energy Physics recommends to study collider designs for the post-LHC era. Among the suggested projects there is the circular 100 TeV proton-proton collider FCC-hh. Starting from LHC and its proposed upgrade HL-LHC, this paper outlines the development of the interaction region design for FCC-hh. We identify energy deposition from debris of the collision events as a driving factor for the layout and draft the guiding principles to unify protection of the superconducting final focus magnets from radiation with a high luminosity performance. Furthermore, we offer a novel strategy to mitigate the lifetime limitation of the first final focus magnet due to radiation load, the Q1 split.

Overview of design development of FCC-hh Experimental Interaction Regions

CERN Document Server

AUTHOR|(CDS)2082479; Abelleira, Jose; Cruz Alaniz, Emilia; Van Riesen-Haupt, Leon; Benedikt, Michael; Besana, Maria Ilaria; Buffat, Xavier; Burkhardt, Helmut; Cerutti, Francesco; Langner, Andy Sven; Martin, Roman; Riegler, Werner; Schulte, Daniel; Tomas Garcia, Rogelio; Appleby, Robert Barrie; Rafique, Haroon; Barranco Garcia, Javier; Pieloni, Tatiana; Boscolo, Manuela; Collamati, Francesco; Nevay, Laurence James; Hofer, Michael

2017-01-01

The experimental interaction region (EIR) is one of the key areas that define the performance of the Future Circular Collider. In this overview we will describe the status and the evolution of the design of EIR of FCC-hh, focusing on design of the optics, energy deposition in EIR elements, beam-beam effects and machine detector interface issues.

The structure and institutions: a regional aspect of interaction in the economic system

Directory of Open Access Journals (Sweden)

Leonid Stepanovich Tarasevich

2014-09-01

Full Text Available In the article with the help of two-sector model of the economic system, the interaction of national and regional economy is investigated. This interaction is observed from the position of development of material structure and institutions. As the key structural parameter of an economy, the proportion between sector of excess resources and sector of scarce resources is taken. The situation when sector of excess resources prevails over sector of scarce resources forms structural conditions for the creation of the market institutions. If a sector of excess resources is smaller than a sector of scarce resources, the conditions for the emergence of institutions of government regulation are formed. Two cases are analyzed: the first one concerns the situation of a simple national economy consisting of 2 provisory regions. The second is the case of the national economy consisting of many regions. The authors show that material structure of a total combination of regions defines institutions of the market or state regulation for the national economy as a whole. The institutions formed at the level of the national economy, can support or resist the development of structure of the region. The conditions are observed under which united institutions of the national economy contradict a development of structure of the individual region.

Performance of upstream interaction region detectors for the FIRST experiment at GSI

CERN Document Server

Abou-Haidar, Z; Alvarez, M A G; Anelli, M; Aumann, T; Battistoni, G; Bocci, A; Bohlen, T T; Boudard, A; Brunetti, A; Carpinelli, M; Cirrone, G A P; Cortes-Giraldo, M A; Cuttone, G; De Napoli, M; Durante, M; Fernandez-Garcia, J P; Finck, C; Gallardo, M I; Golosio, B; Iarocci, E; Iazzi, F; Ickert, G; Introzzi, R; Juliani, D; Krimmer, J; Kurz, N; Labalme, M; Leifels, Y; Le Fevre, A; Leray, S; Marchetto, F; Monaco, V; Morone, M C; Oliva, P; Paoloni, A; Patera, V; Piersanti, L; Pleskac, R; Quesada, J M; Randazzo, N; Romano, F; Rossi, D; Rosso, V; Rousseau, M; Sacchi, R; Sala, P; Sarti, A; Schuy, C; Sciubba, A; Sfienti, C; Simon, H; Sipala, V; Spiriti, E; Stuttge, L; Tropea, S; Younis, H

2012-01-01

The FIRST (Fragmentation of Ions Relevant for Space and Therapy) experiment at GSI has been designed to study carbon fragmentation, measuring (12)C double differential cross sections (- (2)I /- - E) for different beam energies between 100 and 1000 MeV/u. The experimental setup integrates newly designed detectors in the, so called, Interaction Region around the graphite target. The Interaction Region upstream detectors are a 250 mum thick scintillator and a drift chamber optimized for a precise measurement of the ions interaction time and position on the target. In this article we review the design of the upstream detectors along with the preliminary results of the data taking performed on August 2011 with 400 MeV/u fully stripped carbon ion beam at GSI. Detectors performances will be reviewed and compared to those obtained during preliminary tests, performed with 500 MeV electrons (at the BTF facility in the INFN Frascati Laboratories) and 80 MeV/u protons and carbon ions (at the INFN LNS Laboratories in Cata...

An improved method for pancreas segmentation using SLIC and interactive region merging

Science.gov (United States)

Zhang, Liyuan; Yang, Huamin; Shi, Weili; Miao, Yu; Li, Qingliang; He, Fei; He, Wei; Li, Yanfang; Zhang, Huimao; Mori, Kensaku; Jiang, Zhengang

2017-03-01

Considering the weak edges in pancreas segmentation, this paper proposes a new solution which integrates more features of CT images by combining SLIC superpixels and interactive region merging. In the proposed method, Mahalanobis distance is first utilized in SLIC method to generate better superpixel images. By extracting five texture features and one gray feature, the similarity measure between two superpixels becomes more reliable in interactive region merging. Furthermore, object edge blocks are accurately addressed by re-segmentation merging process. Applying the proposed method to four cases of abdominal CT images, we segment pancreatic tissues to verify the feasibility and effectiveness. The experimental results show that the proposed method can make segmentation accuracy increase to 92% on average. This study will boost the application process of pancreas segmentation for computer-aided diagnosis system.

Emission-line diagnostics of nearby H II regions including interacting binary populations

Science.gov (United States)

Xiao, Lin; Stanway, Elizabeth R.; Eldridge, J. J.

2018-06-01

We present numerical models of the nebular emission from H II regions around young stellar populations over a range of compositions and ages. The synthetic stellar populations include both single stars and interacting binary stars. We compare these models to the observed emission lines of 254 H II regions of 13 nearby spiral galaxies and 21 dwarf galaxies drawn from archival data. The models are created using the combination of the BPASS (Binary Population and Spectral Synthesis) code with the photoionization code CLOUDY to study the differences caused by the inclusion of interacting binary stars in the stellar population. We obtain agreement with the observed emission line ratios from the nearby star-forming regions and discuss the effect of binary-star evolution pathways on the nebular ionization of H II regions. We find that at population ages above 10 Myr, single-star models rapidly decrease in flux and ionization strength, while binary-star models still produce strong flux and high [O III]/H β ratios. Our models can reproduce the metallicity of H II regions from spiral galaxies, but we find higher metallicities than previously estimated for the H II regions from dwarf galaxies. Comparing the equivalent width of H β emission between models and observations, we find that accounting for ionizing photon leakage can affect age estimates for H II regions. When it is included, the typical age derived for H II regions is 5 Myr from single-star models, and up to 10 Myr with binary-star models. This is due to the existence of binary-star evolution pathways, which produce more hot Wolf-Rayet and helium stars at older ages. For future reference, we calculate new BPASS binary maximal starburst lines as a function of metallicity, and for the total model population, and present these in Appendix A.

Interaction region design driven by energy deposition

Directory of Open Access Journals (Sweden)

Roman Martin

2017-08-01

Full Text Available The European Strategy Group for High Energy Physics recommends to study collider designs for the post-LHC era. Among the suggested projects there is the circular 100 TeV proton-proton collider FCC-hh. Starting from LHC and its proposed upgrade HL-LHC, this paper outlines the development of the interaction region design for FCC-hh. We identify energy deposition from debris of the collision events as a driving factor for the layout and draft the guiding principles to unify protection of the superconducting final focus magnets from radiation with a high luminosity performance. Furthermore, we offer a novel strategy to mitigate the lifetime limitation of the first final focus magnet due to radiation load, the Q1 split.

Pion-nucleon interactions in low energy region

International Nuclear Information System (INIS)

Hiroshige, Noboru; Tsujimura, Tadakuni.

1977-01-01

Pion-nucleon interactions in low energy region (below 320 MeV in kinetic energy) are investigated on the basis of the one-particle-exchange model. The model is directly compared with the experimental data, i.e., differential cross sections and recoil nucleon polarizations, since phase shifts have not been uniquely determined. It is shown that these experimental data can be well reproduced by taking account of N (nucleon), Δ 33 , N 11 , N 13 , rho, f 0 and S (scalar meson) in the intermediate state. Some comments are given on the coupling constants which are determined so as to minimize chi-squared value (chi 2 ). Our predicted phase shifts for s-, p- and d-waves are also compared with other authors'. (auth.)

Gender-specific spatial interactions on Dutch regional labour markets and the gender employment gap

NARCIS (Netherlands)

Noback, Inge; Broersma, Lourens; Van Dijk, Jouke

2013-01-01

Gender-specific spatial interactions on Dutch regional labour markets and the gender employment gap, Regional Studies. This paper analyses gender-specific employment rates and the gender employment gap in Dutch municipalities for 2002. The novelty of this analysis is that it takes into account the

LHC Interaction Region Upgrade Phase I

CERN Document Server

Ostojic, R

2009-01-01

The LHC is starting operation with beam in 2008. The primary goal of CERN and the LHC community is to ensure that the collider is operated efficiently, maximizing its physics reach, and to achieve the nominal performance in the shortest term. Since several years the community has been discussing the directions for upgrading the experiments, in particular ATLAS and CMS, the LHC machine and the CERN proton injector complex. A well substantiated and coherent scenario for the first phase of the upgrade, which is foreseen in 2013, is now approved by CERN Council. In this paper, we present the goals and the proposed conceptual solution for the Phase-I upgrade of the LHC interaction regions. This phase relies on the mature Nb-Ti superconducting magnet technology, with the target of increasing the luminosity by a factor of 2-3 with respect to the nominal luminosity of 1034 cm-2s-1, while maximising the use of the existing infrastructure.

The plasma-wall interaction region: a key low temperature plasma for controlled fusion

International Nuclear Information System (INIS)

Counsell, G F

2002-01-01

The plasma-wall interaction region of a fusion device provides the interface between the hot core plasma and the material surfaces. To obtain acceptably low levels of erosion from these surfaces requires most of the power leaving the core to be radiated. This is accomplished in existing devices by encouraging plasma detachment, in which the hot plasma arriving in the region is cooled by volume recombination and ion-neutral momentum transfer with a dense population of neutrals recycled from the surface. The result is a low temperature (1 eV e e >10 19 m -3 ) but weakly ionized (n 0 >10 20 m -3 , n e /n 0 <0.1) plasma found nowhere else in the fusion environment. This plasma provides many of the conditions found in industrial plasmas exploiting plasma chemistry and the presence of carbon in the region (in the form of carbon-fibre composite used in the plasma facing materials) can result in the formation of deposited hydrocarbon films. The plasma-wall interaction region is therefore among the most difficult in fusion to model, requiring an understanding of atomic, molecular and surface physics issues

Status of the FCC-ee Interaction Region Design

CERN Document Server

Roman Martin; Medina, L

2015-01-01

The FCC-ee project is a high-luminosity circular electron-positron collider envisioned to operate at center-of-mass energies from 90 to 350 GeV, allowing high-precision measurements of the properties of the Z, W and Higgs boson as well as the top quark. It is considered to be a predecessor of a new 100 TeV proton-proton collider hosted in the same 80 to 100 km tunnel in the Geneva area. Currently two interaction region designs are being developed by CERN and BINP using different approaches to the definition of baseline parameters. Both preliminary designs are presentedwith the aimof highlighting the challenges the FCC-ee is facing.

DO COROTATING INTERACTION REGION ASSOCIATED SHOCKS SURVIVE WHEN THEY PROPAGATE INTO THE HELIOSHEATH?

International Nuclear Information System (INIS)

Provornikova, E.; Opher, M.; Izmodenov, V.; Toth, G.

2012-01-01

During the solar minimum at the distance of 42-52 AU from the Sun, Voyager 2 observed recurrent sharp, shock-like increases in the solar wind speed that look very much like forward shocks (Lazarus et al.). The shocks were produced by corotating interaction regions (CIRs) that originated near the Sun. After the termination shock (TS) crossing in 2007, Voyager 2 entered the heliosheath and has been observing the plasma emanated during the recent solar minima. Measurements show high variable flow, but there were no shocks detected in the heliosheath. When CIR-driven shocks propagate to the outer heliosphere, their structure changes due to collision and merging processes of CIRs. In this Letter, we explore an effect of the merging of CIRs on the structure of CIR-associated shocks. We use a three-dimensional MHD model to study the outward propagation of the shocks with characteristics similar to those observed by Voyager 2 at ∼45 AU (Lazarus et al. 1999). We show that due to merging of CIRs (1) reverse shocks disappear, (2) forward shocks become weaker due to interaction with rarefaction regions from preceding CIRs, and (3) forward shocks significantly weaken in the heliosheath. Merged CIRs produce compression regions in the heliosheath with small fluctuations of plasma parameters. Amplitudes of the fluctuations diminish as they propagate deeper in the sheath. We conclude that interaction of shocks and rarefaction regions could be one of the explanations, why shocks produced by CIRs are not observed in the heliosheath by Voyager 2 while they were frequently observed upstream the TS.

Brain regions associated with the acquisition of conditioned place preference for cocaine vs. social interaction.

Science.gov (United States)

El Rawas, Rana; Klement, Sabine; Kummer, Kai K; Fritz, Michael; Dechant, Georg; Saria, Alois; Zernig, Gerald

2012-01-01

Positive social interaction could play an essential role in switching the preference of the substance dependent individual away from drug related activities. We have previously shown that conditioned place preference (CPP) for cocaine at the dose of 15 mg/kg and CPP for four 15-min episodes of social interaction were equally strong when rats were concurrently conditioned for place preference by pairing cocaine with one compartment and social interaction with the other. The aim of the present study was to investigate the differential activation of brain regions related to the reward circuitry after acquisition/expression of cocaine CPP or social interaction CPP. Our findings indicate that cocaine CPP and social interaction CPP activated almost the same brain regions. However, the granular insular cortex and the dorsal part of the agranular insular cortex were more activated after cocaine CPP, whereas the prelimbic cortex and the core subregion of the nucleus accumbens were more activated after social interaction CPP. These results suggest that the insular cortex appears to be potently activated after drug conditioning learning while activation of the prelimbic cortex-nucleus accumbens core projection seems to be preferentially involved in the conditioning to non-drug stimuli such as social interaction.

The lignite industry and regional development. Interactions exemplified by the Rhenish mining area

International Nuclear Information System (INIS)

Kulik, Lars; Voigt, Jens

2013-01-01

Even in times of globalised markets, the German lignite industry retains its local and regional roots. Viewed against this background, the relationship between lignite industry and regional actors, and the interactions between the two play a major role in the perspectives for this branch of Germany's energy sector. Today, the links between the lignite industry and regional bodies are those of a partnership at eye-level. This type of relationship between the industry and regional actors has led to new forms and methods of cooperation at various levels. This is particularly evident in the efforts to re-shape the regional structure, develop the structure of townships and strengthen the economic structure with lignite playing an important role and new partners which are gaining in importance. (orig.)

Module discovery by exhaustive search for densely connected, co-expressed regions in biomolecular interaction networks.

Directory of Open Access Journals (Sweden)

Recep Colak

2010-10-01

Full Text Available Computational prediction of functionally related groups of genes (functional modules from large-scale data is an important issue in computational biology. Gene expression experiments and interaction networks are well studied large-scale data sources, available for many not yet exhaustively annotated organisms. It has been well established, when analyzing these two data sources jointly, modules are often reflected by highly interconnected (dense regions in the interaction networks whose participating genes are co-expressed. However, the tractability of the problem had remained unclear and methods by which to exhaustively search for such constellations had not been presented.We provide an algorithmic framework, referred to as Densely Connected Biclustering (DECOB, by which the aforementioned search problem becomes tractable. To benchmark the predictive power inherent to the approach, we computed all co-expressed, dense regions in physical protein and genetic interaction networks from human and yeast. An automatized filtering procedure reduces our output which results in smaller collections of modules, comparable to state-of-the-art approaches. Our results performed favorably in a fair benchmarking competition which adheres to standard criteria. We demonstrate the usefulness of an exhaustive module search, by using the unreduced output to more quickly perform GO term related function prediction tasks. We point out the advantages of our exhaustive output by predicting functional relationships using two examples.We demonstrate that the computation of all densely connected and co-expressed regions in interaction networks is an approach to module discovery of considerable value. Beyond confirming the well settled hypothesis that such co-expressed, densely connected interaction network regions reflect functional modules, we open up novel computational ways to comprehensively analyze the modular organization of an organism based on prevalent and largely

Module discovery by exhaustive search for densely connected, co-expressed regions in biomolecular interaction networks.

Science.gov (United States)

Colak, Recep; Moser, Flavia; Chu, Jeffrey Shih-Chieh; Schönhuth, Alexander; Chen, Nansheng; Ester, Martin

2010-10-25

Computational prediction of functionally related groups of genes (functional modules) from large-scale data is an important issue in computational biology. Gene expression experiments and interaction networks are well studied large-scale data sources, available for many not yet exhaustively annotated organisms. It has been well established, when analyzing these two data sources jointly, modules are often reflected by highly interconnected (dense) regions in the interaction networks whose participating genes are co-expressed. However, the tractability of the problem had remained unclear and methods by which to exhaustively search for such constellations had not been presented. We provide an algorithmic framework, referred to as Densely Connected Biclustering (DECOB), by which the aforementioned search problem becomes tractable. To benchmark the predictive power inherent to the approach, we computed all co-expressed, dense regions in physical protein and genetic interaction networks from human and yeast. An automatized filtering procedure reduces our output which results in smaller collections of modules, comparable to state-of-the-art approaches. Our results performed favorably in a fair benchmarking competition which adheres to standard criteria. We demonstrate the usefulness of an exhaustive module search, by using the unreduced output to more quickly perform GO term related function prediction tasks. We point out the advantages of our exhaustive output by predicting functional relationships using two examples. We demonstrate that the computation of all densely connected and co-expressed regions in interaction networks is an approach to module discovery of considerable value. Beyond confirming the well settled hypothesis that such co-expressed, densely connected interaction network regions reflect functional modules, we open up novel computational ways to comprehensively analyze the modular organization of an organism based on prevalent and largely available large

Interaction of dependent and non-dependent regions of the acutely injured lung during a stepwise recruitment manoeuvre

International Nuclear Information System (INIS)

Gómez-Laberge, Camille; Rettig, Jordan S; Arnold, John H; Wolf, Gerhard K; Smallwood, Craig D; Boyd, Theonia K

2013-01-01

The benefit of treating acute lung injury with recruitment manoeuvres is controversial. An impediment to settling this debate is the difficulty in visualizing how distinct lung regions respond to the manoeuvre. Here, regional lung mechanics were studied by electrical impedance tomography (EIT) during a stepwise recruitment manoeuvre in a porcine model with acute lung injury. The following interaction between dependent and non-dependent regions consistently occurred: atelectasis in the most dependent region was reversed only after the non-dependent region became overdistended. EIT estimates of overdistension and atelectasis were validated by histological examination of lung tissue, confirming that the dependent region was primarily atelectatic and the non-dependent region was primarily overdistended. The pulmonary pressure–volume equation, originally designed for modelling measurements at the airway opening, was adapted for EIT-based regional estimates of overdistension and atelectasis. The adaptation accurately modelled the regional EIT data from dependent and non-dependent regions (R 2 > 0.93, P < 0.0001) and predicted their interaction during recruitment. In conclusion, EIT imaging of regional lung mechanics reveals that overdistension in the non-dependent region precedes atelectasis reversal in the dependent region during a stepwise recruitment manoeuvre. (paper)

Mapping Soluble Guanylyl Cyclase and Protein Disulfide Isomerase Regions of Interaction.

Directory of Open Access Journals (Sweden)

Erin J Heckler

Full Text Available Soluble guanylyl cyclase (sGC is a heterodimeric nitric oxide (NO receptor that produces cyclic GMP. This signaling mechanism is a key component in the cardiovascular system. NO binds to heme in the β subunit and stimulates the catalytic conversion of GTP to cGMP several hundred fold. Several endogenous factors have been identified that modulate sGC function in vitro and in vivo. In previous work, we determined that protein disulfide isomerase (PDI interacts with sGC in a redox-dependent manner in vitro and that PDI inhibited NO-stimulated activity in cells. To our knowledge, this was the first report of a physical interaction between sGC and a thiol-redox protein. To characterize this interaction between sGC and PDI, we first identified peptide linkages between sGC and PDI, using a lysine cross-linking reagent and recently developed mass spectrometry analysis. Together with Flag-immunoprecipitation using sGC domain deletions, wild-type (WT and mutated PDI, regions of sGC involved in this interaction were identified. The observed data were further explored with computational modeling to gain insight into the interaction mechanism between sGC and oxidized PDI. Our results indicate that PDI interacts preferentially with the catalytic domain of sGC, thus providing a mechanism for PDI inhibition of sGC. A model in which PDI interacts with either the α or the β catalytic domain is proposed.

Understanding Mesoscale Land-Atmosphere Interactions in Arctic Region

Science.gov (United States)

Hong, X.; Wang, S.; Nachamkin, J. E.

2017-12-01

Land-atmosphere interactions in Arctic region are examined using the U.S. Navy Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS©*) with the Noah Land Surface Model (LSM). Initial land surface variables in COAMPS are interpolated from the real-time NASA Land Information System (LIS). The model simulations are configured for three nest grids with 27-9-3 km horizontal resolutions. The simulation period is set for October 2015 with 12-h data assimilation update cycle and 24-h integration length. The results are compared with those simulated without using LSM and evaluated with observations from ONR Sea State R/V Sikuliaq cruise and the North Slope of Alaska (NSA). There are complex soil and vegetation types over the surface for simulation with LSM, compared to without LSM simulation. The results show substantial differences in surface heat fluxes between bulk surface scheme and LSM, which may have an important impact on the sea ice evolution over the Arctic region. Evaluations from station data show surface air temperature and relative humidity have smaller biases for simulation using LSM. Diurnal variation of land surface temperature, which is necessary for physical processes of land-atmosphere, is also better captured than without LSM.

POPULATION MOBILITY CHARACTERISTIC: NOTES FROM THE URBAN-URBAN INTERACTION IN SEMARANG METROPOLITAN REGION

Directory of Open Access Journals (Sweden)

MARDHOTILLAH Santi

2016-12-01

Full Text Available The rapid growth of cities is characterized by the "pressure" in the form of increasingly dense urban areas, slums, traffic congestion, unemployment in the cities, and the number of illegal housing in the suburbs. This issue demonstrates the need for a balance between urban and rural areas. The balance is obtained through the interaction, and the interaction there is a process of "transfer" in the form of the human population, natural resources, and other supporting components. This view of the phenomenon makes many researchers conducting various studies in the context of the interaction between rural and urban. Furthermore, the study of the interaction of cities such as Salatiga and Semarang are in fact joined in the same region, KSN Kedungsepur. Semarang and surrounding developments as Semarang Metropolitan Region (SMR are the main attraction for the people who are around Semarang that caused an increase in the spatial interactions between Semarang and surrounding areas. From some areas belonging to KSN Kedungsepur, there are only two areas with the status of the city of Semarang city as a centre of KSN and Salatiga. This becomes interesting, unique conditions for studying the phenomenon under study is the interaction of the cities. The method used in this research was a quantitative method with descriptive analysis. Data was collected through a questionnaire survey technique primary by taking a random sample of migrants from Salatiga City and studied at the city of Semarang. The results of the study there were four mobility characteristics formed between Salatiga and Semarang, namely, commuting-boarding, boarding-commuting, boarding and boarding-permanent.

Gasdynamics of H II regions. V. The interaction of weak R ionization fronts with dense clouds

Energy Technology Data Exchange (ETDEWEB)

Tenorio-Tagle, G; Bedijn, P J

1981-06-01

The interaction of weak R-type ionization fronts with a density enhancement is calculated numerically as a function of time within the framework of the champagne model of the evolution of H II regions. Calculations are performed under the assumption of plane-parallel geometry for various relative densities of the cloud in which the exciting star is formed and a second cloud with which an ionization front from the first cloud interacts. The supersonic ionization front representing the outer boundary of an H II region experiencing the champagne phase is found to either evolve into a D-type front or remain of type R, depending on the absolute number of photons leaving the H II region that undergoes the champagne phase. Recombinations in the ionized gas eventually slow the ionization front, however photon fluxes allow it to speed up again, resulting in oscillatory propagation of the front. Front-cloud interactions are also shown to lead to the development of a backward-facing shock, a forward-facing shock, and a density maximum in the ionized gas. The results can be used to explain the origin of bright rims in H II regions.

The Target Model of Strategic Interaction of Kazan Federal University and the Region in the Field of Education

Science.gov (United States)

Gabdulchakov, Valerian F.

2016-01-01

The subject of the study in the article is conceptual basis of construction of the target model of interaction between University and region. Hence the topic of the article "the Target model of strategic interaction between the University and the region in the field of education." The objective was to design a target model of this…

Interacting with Compatriots in Russian Regions: the Experience of Tatarstan

Directory of Open Access Journals (Sweden)

Radik R. Gimatdinov

2015-01-01

Full Text Available Work with compatriots promoting the cultural presence of Russia in the world becomes an important element of "soft power" Supporting the preservation and development among compatriots the cultural traditions of the Tatar people as components of ethnic and cultural diversity of Russia, Tatarstan participates in the implementation of the national foreign policy. The Republic of Tatarstan interacts constructively with the Russian Foreign Ministry, Rossotrudnichestvo, takes part in the activities of the Government Commission on Compatriots Abroad. Work with compatriots is carried out by the executive authorities of the republic within a number of regional government programs. The Coordination Council for the Affairs of Compatriots is created in Tatarstan .The sessions of the World Congress of Tatars (WCT are held every five years. The Executive Committee of the WCT is in contact with one and a half hundreds of Tatar organizations in about 40 countries. The most important event in the in the cultural life of Tatar diaspora is celebration of Sabantui. The Days of the Republic of Tatarstan are also held abroad with great success,and they are aimed at strengthening bilateral cooperation together with the promotion of Tatar culture in the world.A special place in the activities of all the Tatar communities takes the honoring and support of the WWII and labor veterans. Work with the young people is the part of interaction with compatriots: youth forums and camps with the study of the Tatar language are organized. Attracting of compatriots to Tatarstan universities is carried out within Russian government programs.The work of strengthening business ties in the framework of the Tatar diaspora is conducted systematically. The interaction with various target groups of compatriots (women, scientists, cultural figures is organized.The authors propose measures of uniting overseas communities of compatriots and exploiting their potential to promote the interests

Particle acceleration at corotating interaction regions in the three-dimensional heliosphere

International Nuclear Information System (INIS)

Desai, M.I.; Marsden, R.G.; Sanderson, T.R.; Balogh, A.; Forsyth, R.J.; Gosling, J.T.

1998-01-01

We have investigated the relationship between the energetic (∼1MeV) proton intensity (J) and the magnetic compression ratio (C) measured at the trailing edges of corotating interaction regions observed at Ulysses. In general, our results show that the proton intensity was well correlated with the compression ratio, provided that the seed intensity remained constant, consistent with predictions of the Fermi model. Specifically, our results indicate that particles were accelerated to above ∼1MeV in energy at or near the trailing edges of the compression regions observed in the midlatitude southern heliosphere, irrespective of whether the bounding reverse shocks were present or not. On the basis of this, we conclude that shock acceleration is probably not the only mechanism by which particles are accelerated to above ∼1MeV in energy at compression or interaction regions (CIRs). On the basis of magnetic field measurements obtained near the trailing edges of several midlatitude CIRs, we propose that particles could have been accelerated via the Fermi mechanism by being scattered back and forth across the trailing edges of the compression regions by large-amplitude Alfvacute en waves. Our results also show that the proton intensity was well correlated with the compression ratio during low solar activity periods but was essentially independent of C during periods of high solar activity. We suggest that the correlation between J and C was not observed during solar active periods because of significant variations in the seed intensity that result from sporadic contributions from transient solar events. In contrast, the correlation was observable during quiescent periods probably because contributions from transients had decreased dramatically, which allowed the CIRs to accelerate particles out of a seed population whose intensity remained relatively unperturbed. copyright 1998 American Geophysical Union

NMR characterisation of the minimal interacting regions of centrosomal proteins 4.1R and NuMA1: effect of phosphorylation

Directory of Open Access Journals (Sweden)

Bruix Marta

2010-01-01

Full Text Available Abstract Background Some functions of 4.1R in non-erythroid cells are directly related with its distinct sub-cellular localisation during cell cycle phases. During mitosis, 4.1R is implicated in cell cycle progression and spindle pole formation, and co-localizes with NuMA1. However, during interphase 4.1R is located in the nucleus and only partially co-localizes with NuMA1. Results We have characterized by NMR the structural features of the C-terminal domain of 4.1R and those of the minimal region (the last 64 residues involved in the interaction with NuMA1. This subdomain behaves as an intrinsically unfolded protein containing a central region with helical tendency. The specific residues implicated in the interaction with NuMA1 have been mapped by NMR titrations and involve the N-terminal and central helical regions. The segment of NuMA1 that interacts with 4.1R is phosphorylated during mitosis. Interestingly, NMR data indicates that the phosphorylation of NuMA1 interacting peptide provokes a change in the interaction mechanism. In this case, the recognition occurs through the central helical region as well as through the C-terminal region of the subdomain meanwhile the N-terminal region do not interact. Conclusions These changes in the interaction derived from the phosphorylation state of NuMA1 suggest that phosphorylation can act as subtle mechanism of temporal and spatial regulation of the complex 4.1R-NuMA1 and therefore of the processes where both proteins play a role.

Social Media Interactions and Online Games - Building up New Human Relationships in Danube Region

Directory of Open Access Journals (Sweden)

Predrag K Nikolić

2015-08-01

Full Text Available In this paper we are trying to explore possibilities of using online environment, multiplayer gaming culture and social media networks to engage people in the Danube Region around social, multi-cultural and environment initiatives. The Danube Region online community could become a new cultural phenomena, technology mediated, built on human interactions, common interests and cultural heritage which open space for future humancentered social and infrastructural design initiatives. We believe that such social media environment could also be a research playground where people form Danube Region may express their needs and desires as well as to leave the trace of their behavior, significant for further Danube Region development.

Study of neutron-proton interaction in the 300-700 MeV energy region

International Nuclear Information System (INIS)

Northcliffe, L.C.

1989-08-01

The primary objective of the program is investigation of the nucleon-nucleon (NN) interaction, in the medium-energy region, in both elastic and inelastic channels. Most of the results of this research have already been published in refereed journals and will not be discussed here

ON MAGNETIC ACTIVITY BAND OVERLAP, INTERACTION, AND THE FORMATION OF COMPLEX SOLAR ACTIVE REGIONS

Energy Technology Data Exchange (ETDEWEB)

McIntosh, Scott W. [High Altitude Observatory, National Center for Atmospheric Research, P.O. Box 3000, Boulder, CO 80307 (United States); Leamon, Robert J., E-mail: mscott@hao.ucar.edu [Department of Physics, Montana State University, Bozeman, MT 59717 (United States)

2014-11-20

Recent work has revealed a phenomenological picture of the how the ∼11 yr sunspot cycle of the Sun arises. The production and destruction of sunspots is a consequence of the latitudinal-temporal overlap and interaction of the toroidal magnetic flux systems that belong to the 22 yr magnetic activity cycle and are rooted deep in the Sun's convective interior. We present a conceptually simple extension of this work, presenting a hypothesis on how complex active regions can form as a direct consequence of the intra- and extra-hemispheric interaction taking place in the solar interior. Furthermore, during specific portions of the sunspot cycle, we anticipate that those complex active regions may be particularly susceptible to profoundly catastrophic breakdown, producing flares and coronal mass ejections of the most severe magnitude.

Interactions of early adversity with stress-related gene polymorphisms impact regional brain structure in females.

Science.gov (United States)

Gupta, Arpana; Labus, Jennifer; Kilpatrick, Lisa A; Bonyadi, Mariam; Ashe-McNalley, Cody; Heendeniya, Nuwanthi; Bradesi, Sylvie; Chang, Lin; Mayer, Emeran A

2016-04-01

Early adverse life events (EALs) have been associated with regional thinning of the subgenual cingulate cortex (sgACC), a brain region implicated in the development of disorders of mood and affect, and often comorbid functional pain disorders, such as irritable bowel syndrome (IBS). Regional neuroinflammation related to chronic stress system activation has been suggested as a possible mechanism underlying these neuroplastic changes. However, the interaction of genetic and environmental factors in these changes is poorly understood. The current study aimed to evaluate the interactions of EALs and candidate gene polymorphisms in influencing thickness of the sgACC. 210 female subjects (137 healthy controls; 73 IBS) were genotyped for stress and inflammation-related gene polymorphisms. Genetic variation with EALs, and diagnosis on sgACC thickness was examined, while controlling for race, age, and total brain volume. Compared to HCs, IBS had significantly reduced sgACC thickness (p = 0.03). Regardless of disease group (IBS vs. HC), thinning of the left sgACC was associated with a significant gene-gene environment interaction between the IL-1β genotype, the NR3C1 haplotype, and a history of EALs (p = 0.05). Reduced sgACC thickness in women with the minor IL-1β allele, was associated with EAL total scores regardless of NR3C1 haplotype status (p = 0.02). In subjects homozygous for the major IL-1β allele, reduced sgACC with increasing levels of EALs was seen only with the less common NR3C1 haplotype (p = 0.02). These findings support an interaction between polymorphisms related to stress and inflammation and early adverse life events in modulating a key region of the emotion arousal circuit.

Lateral and medial ventral occipitotemporal regions interact during the recognition of images revealed from noise

Directory of Open Access Journals (Sweden)

Barbara eNordhjem

2016-01-01

Full Text Available Several studies suggest different functional roles for the medial and the lateral ventral sections in object recognition. Texture and surface information is processed in medial regions, while shape information is processed in lateral sections. This begs the question whether and how these functionally specialized sections interact with each other and with early visual cortex to facilitate object recognition. In the current research, we set out to answer this question. In an fMRI study, thirteen subjects viewed and recognized images of objects and animals that were gradually revealed from noise while their brains were being scanned. We applied dynamic causal modeling (DCM – a method to characterize network interactions – to determine the modulatory effect of object recognition on a network comprising the primary visual cortex (V1, the lingual gyrus (LG in medial ventral cortex and the lateral occipital cortex (LO. We found that object recognition modulated the bilateral connectivity between LG and LO. Moreover, the feed-forward connectivity from V1 to LG and LO was modulated, while there was no evidence for feedback from these regions to V1 during object recognition. In particular, the interaction between medial and lateral areas supports a framework in which visual recognition of objects is achieved by networked regions that integrate information on image statistics, scene content and shape – rather than by a single categorically specialized region – within the ventral visual cortex.

Interaction Region for a 100 TeV Proton-Proton Collider

CERN Document Server

Martin, R; Dalena, B

2015-01-01

As part of its post-LHC high energy physics program, CERN is conducting a study for a new proton-proton collider, FCC-hh, running at center-of-mass energies of up to 100 TeV, pushing the energy frontier of fundamental physics to a new limit. At a circumference of 80-100 km, this machine is planned to use the same tunnel as FCC-ee, a proposed 90-350 GeV high luminosity electron-positron collider. This paper presents the design progress and technical challenges for the interaction region of FCC-hh.

The System-Supplementing Effect of the Interaction between Innovative Capacity and Institutional Environment Factors of a Region

Directory of Open Access Journals (Sweden)

Viktor Nikolayevich Ovchinnikov

2016-06-01

Full Text Available In the article, the effect of interaction between the development level of regional innovative capacity and its innovative and institutional infrastructure is traced. The research objective is to prove the hypothesis of the essential impact of the regional institutional and information environment on its innovative capacity, the identification of the effect of their systemsupplementing interaction. From the standpoint of the methodology of system-structural research its components are allocated within the innovative capacity of the regional innovative system (RIS, they are presented by a corporate sector, the structures of small and medium business, and also by the subjects of ethnic economy. The use of essential-analytical and functional approaches has revealed the leading role of intangible assets of the corporate sector of the economy in region’s innovative development. The correlation and regression analysis has confirmed the essential dependence of the innovative activity of the region on the systemic completeness of the development of its institutional and infrastructure environment. The results of the research have shown that to ensure the system-supplementing effect of the interaction between innovative capacity and the factors of its activation in the sphere of institutional infrastructure, it is necessary to consistently develop its operational base — the institutions of RIS. The recommendations reasoned in the article may be used for the development of regional innovation strategies, the formation of innovation clusters. The three-component structure of the innovation cluster of the region is offered; its integrating function in relation to the innovative components of the regional sectoral clusters is determined. The factors constraining the growth of innovation activity of the regional economic subjects are revealed and the recommendations on the development of the institutional and infrastructural environment of the Rostov

SUMMARY REPORT OF THE INTERACTION REGION WORKING GROUP (T1) AT SNOWMASS

Energy Technology Data Exchange (ETDEWEB)

Markiewicz, Thomas W

2002-09-23

The Interaction Region Working Group (T1) at Snowmass 2001 reviewed the issues, designs, and plans of existing and proposed colliders, including hadron colliders, e{sup -} hadron colliders, e{sup +}e{sup -} and {gamma}{gamma} linear colliders, e{sup +}e{sup -} circular colliders, and muon colliders. This document summarizes the IR issues, status, and R&D plans for each project.

LHC interaction region quadrupole cryostat design

International Nuclear Information System (INIS)

Nicol, T.H.; Darve, Ch.; Huang, Y.; Page, T.M.

2002-01-01

The cryostat of a Large Hadron Collider (LHC) Interaction Region (IR) quadrupole magnet consists of all components of the inner triplet except the magnet assembly itself. It serves to support the magnet accurately and reliably within the vacuum vessel, to house all required cryogenic piping, and to insulate the cold mass from heat radiated and conducted from the environment. It must function reliably during storage, shipping and handling, normal magnet operation, quenches, and seismic excitations, and must be able to be manufactured at low cost. The major components of the cryostat are the vacuum vessel, thermal shield, multi-layer insulation system, cryogenic piping, and suspension system. The overall design of a cryostat for superconducting accelerator magnets requires consideration of fluid flow, proper selection of materials for their thermal and structural performance at both ambient and operating temperature, and knowledge of the environment to which the magnets will be subjected over the course of their expected operating lifetime. This paper describes the current LHC IR inner triplet quadrupole magnet cryostats being designed and manufactured at Fermilab as part of the US-LHC collaboration, and includes discussions on the structural and thermal considerations involved in the development of each of the major systems

Progeny-testing of full-sibs IBD in a SSC2 QTL region highlights epistatic interactions for fatness traits in pigs

Directory of Open Access Journals (Sweden)

Iannuccelli Nathalie

2011-10-01

Full Text Available Abstract Background Many QTL have been detected in pigs, but very few of them have been fine-mapped up to the causal mutation. On SSC2, the IGF2-intron3-G3072A mutation has been described as the causative polymorphism for a QTL underlying muscle mass and backfat deposition, but further studies have demonstrated that at least one additional QTL should segregate downstream of this mutation. A marker-assisted backcrossing design was set up in order to confirm the segregation of this second locus, reduce its confidence interval and better understand its mode of segregation. Results Five recombinant full-sibs, with genotype G/G at the IGF2 mutation, were progeny-tested. Only two of them displayed significant QTL for fatness traits although four inherited the same paternal and maternal chromosomes, thus exhibiting the same haplotypic contrast in the QTL region. The hypothesis of an interaction with another region in the genome was proposed to explain these discrepancies and after a genome scan, four different regions were retained as potential interacting regions with the SSC2 QTL. A candidate interacting region on SSC13 was confirmed by the analysis of an F2 pedigree, and in the backcross pedigree one haplotype in this region was found to mask the SSC2 QTL effect. Conclusions Assuming the hypothesis of interactions with other chromosomal regions, the QTL could be unambiguously mapped to a 30 cM region delimited by recombination points. The marker-assisted backcrossing design was successfully used to confirm the segregation of a QTL on SSC2 and, because full-sibs that inherited the same alleles from their two parents were analysed, the detection of epistatic interactions could be performed between alleles and not between breeds as usually done with the traditional Line-Cross model. Additional analyses of other recombinant sires should provide more information to further improve the fine-mapping of this locus, and confirm or deny the interaction

Wind tunnel study of the wind turbine interaction with a boundary-layer flow: Upwind region, turbine performance, and wake region

Science.gov (United States)

Bastankhah, M.; Porté-Agel, F.

2017-06-01

Comprehensive wind tunnel experiments were carried out to study the interaction of a turbulent boundary layer with a wind turbine operating under different tip-speed ratios and yaw angles. Force and power measurements were performed to characterize the variation of thrust force (both magnitude and direction) and generated power of the wind turbine under different operating conditions. Moreover, flow measurements, collected using high-resolution particle-image velocimetry as well as hot-wire anemometry, were employed to systematically study the flow in the upwind, near-wake, and far-wake regions. These measurements provide new insights into the effect of turbine operating conditions on flow characteristics in these regions. For the upwind region, the results show a strong lateral asymmetry under yawed conditions. For the near-wake region, the evolution of tip and root vortices was studied with the use of both instantaneous and phase-averaged vorticity fields. The results suggest that the vortex breakdown position cannot be determined based on phase-averaged statistics, particularly for tip vortices under turbulent inflow conditions. Moreover, the measurements in the near-wake region indicate a complex velocity distribution with a speed-up region in the wake center, especially for higher tip-speed ratios. In order to elucidate the meandering tendency of far wakes, particular focus was placed on studying the characteristics of large turbulent structures in the boundary layer and their interaction with wind turbines. Although these structures are elongated in the streamwise direction, their cross sections are found to have a size comparable to the rotor area, so that they can be affected by the presence of the turbine. In addition, the study of spatial coherence in turbine wakes reveals that any statistics based on streamwise velocity fluctuations cannot provide reliable information about the size of large turbulent structures in turbine wakes due to the effect of wake

SimTrack: A compact c++ library for particle orbit and spin tracking in accelerators

Energy Technology Data Exchange (ETDEWEB)

Luo, Yun [Brookhaven National Laboratory (BNL), Upton, NY (United States)

2015-06-24

SimTrack is a compact c++ library of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam-beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam-beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam-beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this article, I will present the code architecture, physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.

SimTrack: A compact c++ code for particle orbit and spin tracking in accelerators

Energy Technology Data Exchange (ETDEWEB)

Luo, Yun

2015-11-21

SimTrack is a compact c++ code of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam–beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam–beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam–beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this paper, I will present the code architecture, physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.

Logic of quench protection assembly for BEPC II interaction region superconducting magnet

International Nuclear Information System (INIS)

Chen Fusan; Cheng Jian

2006-01-01

Two superconducting magnet complexes are used in BEPC II interaction region. The corresponding quench protection system divides all related faults into two classes and takes different protection actions according to the urgency degree. Since BEPC II has two operating modes and the superconducting magnets use different power supplies in different operating modes, the quench protection system must take the mode switching into consideration. (authors)

The 2 mrad crossing-angle ILC interaction region and extraction line

CERN Document Server

Appleby, Robert; Bambade, Philip; Dadoun, Olivier; Parker, Brett; Keller, Lewis; Moffeit, Kenneth C; Nosochkov, Yuri; Seryi, Andrei; Spencer, Cherrill M; Carter, John; Napoly, Olivier

2006-01-01

A complete optics design for the 2mrad crossing angle interaction region and extraction line was presented at Snowmass 2005. Since this time, the design task force has been working on developing and improving the performance of the extraction line. The work has focused on optimising the final doublet parameters and on reducing the power losses resulting from the disrupted beam transport. In this paper, the most recent status of the 2mrad layout and the corresponding performance are presented.

Atypical energetic particle events observed prior energetic particle enhancements associated with corotating interaction regions

Science.gov (United States)

Khabarova, Olga; Malandraki, Olga; Zank, Gary; Jackson, Bernard; Bisi, Mario; Desai, Mihir; Li, Gang; le Roux, Jakobus; Yu, Hsiu-Shan

2017-04-01

Recent studies of mechanisms of particle acceleration in the heliosphere have revealed the importance of the comprehensive analysis of stream-stream interactions as well as the heliospheric current sheet (HCS) - stream interactions that often occur in the solar wind, producing huge magnetic cavities bounded by strong current sheets. Such cavities are usually filled with small-scale magnetic islands that trap and re-accelerate energetic particles (Zank et al. ApJ, 2014, 2015; le Roux et al. ApJ, 2015, 2016; Khabarova et al. ApJ, 2015, 2016). Crossings of these regions are associated with unusual variations in the energetic particle flux up to several MeV/nuc near the Earth's orbit. These energetic particle flux enhancements called "atypical energetic particle events" (AEPEs) are not associated with standard mechanisms of particle acceleration. The analysis of multi-spacecraft measurements of energetic particle flux, plasma and the interplanetary magnetic field shows that AEPEs have a local origin as they are observed by different spacecraft with a time delay corresponding to the solar wind propagation from one spacecraft to another, which is a signature of local particle acceleration in the region embedded in expanding and rotating background solar wind. AEPEs are often observed before the arrival of corotating interaction regions (CIRs) or stream interaction regions (SIRs) to the Earth's orbit. When fast solar wind streams catch up with slow solar wind, SIRs of compressed heated plasma or more regular CIRs are created at the leading edge of the high-speed stream. Since coronal holes are often long-lived structures, the same CIR re-appears often for several consecutive solar rotations. At low heliographic latitudes, such CIRs are typically bounded by forward and reverse waves on their leading and trailing edges, respectively, that steepen into shocks at heliocentric distances beyond 1 AU. Energetic ion increases have been frequently observed in association with CIR

Molecular dissection of the interaction between the SH3 domain and the SH2-Kinase Linker region in PTK6.

Science.gov (United States)

Kim, Han Ie; Jung, Jinwon; Lee, Eun-Saem; Kim, Yong-Chul; Lee, Weontae; Lee, Seung-Taek

2007-11-03

PTK6 (also known as Brk) is an intracellular tyrosine kinase that contains SH3, SH2, and tyrosine kinase catalytic (Kinase) domains. The SH3 domain of PTK6 interacts with the N-terminal half of the linker (Linker) region between the SH2 and Kinase domains. Site-directed mutagenesis and surface plasmon resonance studies showed that a tryptophan residue (Trp44) in the SH3 domain and proline residues in the Linker region, in the order of Pro177, Pro175, and Pro179, contribute to the interaction. The three-dimensional modeled structure of the SH3-Linker complex was in agreement with the biochemical data. Disruption of the intramolecular interaction between the SH3 domain and the Linker region by mutation of Trp44, Pro175, Pro177, and Pro179 markedly increased the catalytic activity of PTK6 in HEK 293 cells. These results demonstrate that Trp44 in the SH3 domain and Pro177, Pro175, and Pro179 in the N-terminal half of the Linker region play important roles in the SH3-Linker interaction to maintain the protein in an inactive conformation along with the phosphorylated Tyr447-SH2 interaction.

Interaction for Innovation: Comparing Norwegian Regions

Directory of Open Access Journals (Sweden)

Marina Solesvik

2014-01-01

Full Text Available Building upon insights from earlier investigations of innovation collaboration from a regional perspective as well as the triple helix perspective, local/regional innovation systems and open innovation approaches, this study explores whether cooperation between firms, universities and government increases the intensity of innovation equally for the capital city and peripheral regions. We investigate whether firms located in the capital region benefit more from public support, cooperation with universities, and cooperation with different stakeholders than firms located in peripheral regions. Using logistic binary regressions, we find that capital region firms are generally not more innovative than those located elsewhere. We also find no effect on innovation from cooperation with universities, although public support is related to engagement in product and process innovations. Our results warn against simple applications of triple helix and open innovation approaches, as many forms of collaboration seem to have little impact on innovation, regardless of regional context.

Interaction effects of region-level GDP per capita and age on labour market transition rates in Italy

Directory of Open Access Journals (Sweden)

Luca Zanin

2017-04-01

Full Text Available Abstract The aim of this paper is to measure the effect of the interaction between age for the population of males and females aged 18 to 74 and region-level GDP per capita on labour market transition probabilities in Italy. We compare different occupational states in a sample of males and females who remained in their region of residence at two points in time (12 months apart. We estimate the transition probabilities using a flexible hierarchical logit model with interaction effects between worker age and region-level GDP per capita. We apply this model using longitudinal data from the Italian Labour Force Survey that cover the 2004–2013 period. We find empirical support for the assumption that people in the same age cohort have different labour market opportunities based on the level of GDP per capita in their region of residence. These differences are particularly relevant among younger workers.

Design of an interaction region with head-on collisions for the ILC

CERN Document Server

Appleby, R; Jackson, F; Alabau-Pons, M; Bambade, P; Brossard, J; Dadoun, O; Rimbault, C; Keller, L; Nosochkov, Y; Seryi, Andrei; Payet, J; Napoly, O; Rippon, C; Uriot, D

2006-01-01

An interaction region (IR) with head-on collisions is considered as an alternative to the baseline configuration of the International Linear Collider (ILC) which includes two IRs with finite crossing-angles (2 and 20 mrad). Although more challenging for the beam extraction, the head-on scheme is favoured by the experiments because it allows a more convenient detector configuration, particularly in the forward region. The optics of the head-on extraction is revisited by separating the e+ and e- beams horizontally, first by electrostatic separators operated at their LEP nominal field and then using a defocusing quadrupole of the final focus beam line. In this way the septum magnet is protected from the beamstrahlung power. Newly optimized final focus and extraction optics are presented, including a first look at post-collision diagnostics. The influence of parasitic collisions is shown to lead to a region of stable collision parameters. Disrupted beam and beamstrahlung photon losses are calculated along the ext...

Aerosol-cloud interactions from urban, regional to global scales

International Nuclear Information System (INIS)

Wang, Yuan

2015-01-01

The studies in this dissertation aim at advancing our scientific understandings about physical processes involved in the aerosol-cloud-precipitation interaction and quantitatively assessing the impacts of aerosols on the cloud systems with diverse scales over the globe on the basis of the observational data analysis and various modeling studies. As recognized in the Fifth Assessment Report by the Inter-government Panel on Climate Change, the magnitude of radiative forcing by atmospheric aerosols is highly uncertain, representing the largest uncertainty in projections of future climate by anthropogenic activities. By using a newly implemented cloud microphysical scheme in the cloud-resolving model, the thesis assesses aerosol-cloud interaction for distinct weather systems, ranging from individual cumulus to mesoscale convective systems. This thesis also introduces a novel hierarchical modeling approach that solves a long outstanding mismatch between simulations by regional weather models and global climate models in the climate modeling community. More importantly, the thesis provides key scientific solutions to several challenging questions in climate science, including the global impacts of the Asian pollution. As scientists wrestle with the complexities of climate change in response to varied anthropogenic forcing, perhaps no problem is more challenging than the understanding of the impacts of atmospheric aerosols from air pollution on clouds and the global circulation.

Aerosol-cloud interactions from urban, regional to global scales

Energy Technology Data Exchange (ETDEWEB)

Wang, Yuan [California Institute of Technology, Pasadena, CA (United States). Seismological Lab.

2015-10-01

The studies in this dissertation aim at advancing our scientific understandings about physical processes involved in the aerosol-cloud-precipitation interaction and quantitatively assessing the impacts of aerosols on the cloud systems with diverse scales over the globe on the basis of the observational data analysis and various modeling studies. As recognized in the Fifth Assessment Report by the Inter-government Panel on Climate Change, the magnitude of radiative forcing by atmospheric aerosols is highly uncertain, representing the largest uncertainty in projections of future climate by anthropogenic activities. By using a newly implemented cloud microphysical scheme in the cloud-resolving model, the thesis assesses aerosol-cloud interaction for distinct weather systems, ranging from individual cumulus to mesoscale convective systems. This thesis also introduces a novel hierarchical modeling approach that solves a long outstanding mismatch between simulations by regional weather models and global climate models in the climate modeling community. More importantly, the thesis provides key scientific solutions to several challenging questions in climate science, including the global impacts of the Asian pollution. As scientists wrestle with the complexities of climate change in response to varied anthropogenic forcing, perhaps no problem is more challenging than the understanding of the impacts of atmospheric aerosols from air pollution on clouds and the global circulation.

Delineation of the calcineurin-interacting region of cyclophilin B.

Science.gov (United States)

Carpentier, M; Allain, F; Haendler, B; Slomianny, M C; Spik, G

2000-12-01

The immunosuppressant drug cyclosporin A (CsA) inhibits T-cell function by blocking the phosphatase activity of calcineurin. This effect is mediated by formation of a complex between the drug and cyclophilin (CyP), which creates a composite surface able to make high-affinity contacts with calcineurin. In vitro, the CyPB/CsA complex is more effective in inhibiting calcineurin than the CyPA/CsA and CyPC/CsA complexes, pointing to fine structural differences in the calcineurin-binding region. To delineate the calcineurin-binding region of CyPB, we mutated several amino acids, located in two loops corresponding to CyPA regions known to be involved, as follows: R76A, G77H, D155R, and D158R. Compared to wild-type CyPB, the G77H, D155R, and D158R mutants had intact isomerase and CsA-binding activities, indicating that no major conformational changes had taken place. When complexed to CsA, they all displayed only reduced affinity for calcineurin and much decreased inhibition of calcineurin phosphatase activity. These results strongly suggest that the three amino acids G77, D155, and D158 are directly involved in the interaction of CyPB/CsA with calcineurin, in agreement with their exposed position. The G77, D155, and D158 residues are not maintained in CyPA and might therefore account for the higher affinity of the CyPB/CsA complex for calcineurin.

HOM [higher order mode] losses at the IR [interaction region] of the B-factory

International Nuclear Information System (INIS)

Heifets, S.

1990-08-01

Masking at the interaction region (IR) will presumably reduce the synchrotron radiation background in the detector. One possible layout of the IR for B-factory shows a rather complicated system of masks. A bunch passing each mask will generate RF waves. These waves (called usually higher order modes, HOM-s) will be absorbed in the beam pipe wall producing additional heating and, interacting with the beam, kicking particles in the radial and azimuthal directions. This may change the bunch motion and its emittance. These effects are estimated in the present note

Interannual-to-decadal air-sea interactions in the tropical Atlantic region

Science.gov (United States)

Ruiz-Barradas, Alfredo

2001-09-01

The present research identifies modes of atmosphere-ocean interaction in the tropical Atlantic region and the mechanisms by which air-sea interactions influence the regional climate. Novelties of the present work are (1)the use of relevant ocean and atmosphere variables important to identity coupled variability in the system. (2)The use of new data sets, including realistic diabatic heating. (3)The study of interactions between ocean and atmosphere relevant at interannual-to-decadal time scales. Two tropical modes of variability are identified during the period 1958-1993, the Atlantic Niño mode and the Interhemispheric mode. Those modes have defined structures in both ocean and atmosphere. Anomalous sea surface temperatures and winds are associated to anomalous placement of the Intertropical Convergence Zone (ITCZ). They develop maximum amplitude during boreal summer and spring, respectively. The anomalous positioning of the ITCZ produces anomalous precipitation in some places like Nordeste, Brazil and the Caribbean region. Through the use of a diagnostic primitive equation model, it is found that the most important terms controlling local anomalous surface winds over the ocean are boundary layer temperature gradients and diabatic heating anomalies at low levels (below 780 mb). The latter is of particular importance in the deep tropics in producing the anomalous meridional response to the surface circulation. Simulated latent heat anomalies indicate that a thermodynamic feedback establishes positive feedbacks at both sides of the equator and west of 20°W in the deep tropics and a negative feedback in front of the north west coast of Africa for the Interhemispheric mode. This thermodynamic feedback only establishes negative feedbacks for the Atlantic Niño mode. Transients establish some connection between the tropical Atlantic and other basins. Interhemispheric gradients of surface temperature in the tropical Atlantic influence winds in the midlatitude North

Radiation levels in the SSC interaction regions

Energy Technology Data Exchange (ETDEWEB)

Groom, D.E. [ed.

1988-06-10

The radiation environment in a typical SSC detector has been evaluated using the best available particle production models coupled with Monte Carlo simulations of hadronic and electromagnetic cascades. The problems studied include direct charged particle dose, dose inside a calorimeter from the cascades produced by incident photons and hadrons, the flux of neutrons and photons backscattered from the calorimeter into a central cavity, and neutron flux in the calorimeter. The luminosity lifetime at the SSC is dominated by collision losses in the interaction regions, where the luminosity is equivalent to losing an entire full-energy proton beam into the apparatus every six days. The result of an average p-p collision can be described quite simply. The mean charged multiplicity is about 110, and the particles are distributed nearly uniformly in pseudorapidity ({eta}) over all the angles of interest. The transverse momentum distribution is independent of angle, and for our purposes may be written as p{perpendicular}exp(-p{perpendicular}/{beta}). The mean value of p{perpendicular} may be as high as 0.6 GeV/c. Most of the radiation is produced by the very abundant low-p{perpendicular} particles. The dose or neutron fluence produced by individual particles in this energy region are simulated over a wide variety of conditions, and several measurements serve to confirm the simulation results. In general, the response (a dose, fluence, the number of backscattered neutrons, etc.) for an incident particle of momentum p can be parameterized in the form Np{sup {alpha}}, where 0.5 < {alpha}< 1.0. The authors believe most of their results to be accurate to within a factor of two or three, sufficiently precise to serve as the basis for detailed designs.

THE MAIN TRENDS OF INTERACTION BETWEEN THE ADMINISTRATION OF ROSPOTREBNADZOR IN THE LENINGRAD REGION AND THE GOVERNMENT OF LENINGRAD REGION IN THE FIELD OF POPULATION RADIATION PROTECTION

Directory of Open Access Journals (Sweden)

S. A. Gorbanev

2008-01-01

Full Text Available The article gives the main interaction trends of the Administration of Rospotrebnadzor in the Leningrad Region and the Government of Leningrad Region regarding issues of regional radiation protection. It reports on comprehensive measures devoted to the limitation of the population exposure from natural irradiation sources, monitoring of territories which suffered from Chernobyl NPP accident and monitoring of the environmental impact of unauthorized dumps and solid municipal waste sites in the Leningrad Region. It presents the basic issues of medical exposure limitation in the Leningrad Region and measures for their solving.

Development of a high gradient quadrupole for the LHC Interaction Regions

International Nuclear Information System (INIS)

Bossert, R.; Feher, S.; Gourlay, S.A.

1997-04-01

A collaboration of Fermilab, Lawrence Berkeley National Laboratory and Brookhaven National Laboratory is engaged in the design of a high gradient quadrupole suitable for use in the LHC interaction regions. The cold iron design incorporates a two-layer, cos(2θ) coil geometry with a 70 mm aperture operating in superfluid helium. This paper summarizes the progress on a magnetic, mechanical and thermal design that meets the requirements of maximum gradient above 250 T/m, high field quality and provision for adequate cooling in a high radiation environment

Design of a High Gradient Quadrupole for the LHC Interaction Regions

International Nuclear Information System (INIS)

Bossert, R.; Gourlay, S.A.; Heger, T.; Huang, Y.; Kerby, J.; Lamm, M.J.; Limon, P.J.; Mazur, P.O.; Nobrega, F.; Ozelis, J.P.; Sabbi, G.; Strait, J.; Zlobin, A.V.; Caspi, S.; Dell'orco, D.; McInturff, A.D.; Scanlan, R.M.; Van Oort, J.M.; Gupta, R.C.

1997-03-01

A collaboration of Fermilab, Lawrence Berkeley National Laboratory and Brookhaven National Laboratory is currently engaged in the design of a high gradient quadrupole suitable for use in the LHC interaction regions. The cold iron design incorporates a two-shell, cos2θ coil geometry with a 70 mm aperture. This paper summarizes the progress on a magnetic and mechanical design that meets the requirements of maximum gradient ≥250 T/m, operation at 1.8K, high field quality and provision for adequate cooling in a high radiation environment

Interactive Building Design Space Exploration Using Regionalized Sensitivity Analysis

DEFF Research Database (Denmark)

Østergård, Torben; Jensen, Rasmus Lund; Maagaard, Steffen

2017-01-01

simulation inputs are most important and which have negligible influence on the model output. Popular sensitivity methods include the Morris method, variance-based methods (e.g. Sobol’s), and regression methods (e.g. SRC). However, all these methods only address one output at a time, which makes it difficult...... in combination with the interactive parallel coordinate plot (PCP). The latter is an effective tool to explore stochastic simulations and to find high-performing building designs. The proposed methods help decision makers to focus their attention to the most important design parameters when exploring......Monte Carlo simulations combined with regionalized sensitivity analysis provide the means to explore a vast, multivariate design space in building design. Typically, sensitivity analysis shows how the variability of model output relates to the uncertainties in models inputs. This reveals which...

Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate.

Science.gov (United States)

Esakova, Olga; Perederina, Anna; Berezin, Igor; Krasilnikov, Andrey S

2013-08-01

Ribonuclease (RNase) MRP is a ubiquitous and essential site-specific eukaryotic endoribonuclease involved in the metabolism of a wide range of RNA molecules. RNase MRP is a ribonucleoprotein with a large catalytic RNA moiety that is closely related to the RNA component of RNase P, and multiple proteins, most of which are shared with RNase P. Here, we report the results of an ultraviolet-cross-linking analysis of interactions between a photoreactive RNase MRP substrate and the Saccharomyces cerevisiae RNase MRP holoenzyme. The results show that the substrate interacts with phylogenetically conserved RNA elements universally found in all enzymes of the RNase P/MRP family, as well as with a phylogenetically conserved RNA region that is unique to RNase MRP, and demonstrate that four RNase MRP protein components, all shared with RNase P, interact with the substrate. Implications for the structural organization of RNase MRP and the roles of its components are discussed.

Identification of T1D susceptibility genes within the MHC region by combining protein interaction networks and SNP genotyping data

DEFF Research Database (Denmark)

Brorsson, C.; Hansen, Niclas Tue; Hansen, Kasper Lage

2009-01-01

genes. We have developed a novel method that combines single nucleotide polymorphism (SNP) genotyping data with protein-protein interaction (ppi) networks to identify disease-associated network modules enriched for proteins encoded from the MHC region. Approximately 2500 SNPs located in the 4 Mb MHC......To develop novel methods for identifying new genes that contribute to the risk of developing type 1 diabetes within the Major Histocompatibility Complex (MHC) region on chromosome 6, independently of the known linkage disequilibrium (LD) between human leucocyte antigen (HLA)-DRB1, -DQA1, -DQB1...... region were analysed in 1000 affected offspring trios generated by the Type 1 Diabetes Genetics Consortium (T1DGC). The most associated SNP in each gene was chosen and genes were mapped to ppi networks for identification of interaction partners. The association testing and resulting interacting protein...

C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein

Science.gov (United States)

Cloix, Catherine; Kaiserli, Eirini; Heilmann, Monika; Baxter, Katherine J.; Brown, Bobby A.; O’Hara, Andrew; Smith, Brian O.; Christie, John M.; Jenkins, Gareth I.

2012-01-01

UV-B light initiates photomorphogenic responses in plants. Arabidopsis UV RESISTANCE LOCUS8 (UVR8) specifically mediates these responses by functioning as a UV-B photoreceptor. UV-B exposure converts UVR8 from a dimer to a monomer, stimulates the rapid accumulation of UVR8 in the nucleus, where it binds to chromatin, and induces interaction of UVR8 with CONSTITUTIVELY PHOTOMORPHOGENIC1 (COP1), which functions with UVR8 to control photomorphogenic UV-B responses. Although the crystal structure of UVR8 reveals the basis of photoreception, it does not show how UVR8 initiates signaling through interaction with COP1. Here we report that a region of 27 amino acids from the C terminus of UVR8 (C27) mediates the interaction with COP1. The C27 region is necessary for UVR8 function in the regulation of gene expression and hypocotyl growth suppression in Arabidopsis. However, UVR8 lacking C27 still undergoes UV-B–induced monomerization in both yeast and plant protein extracts, accumulates in the nucleus in response to UV-B, and interacts with chromatin at the UVR8-regulated ELONGATED HYPOCOTYL5 (HY5) gene. The UV-B–dependent interaction of UVR8 and COP1 is reproduced in yeast cells and we show that C27 is both necessary and sufficient for the interaction of UVR8 with the WD40 domain of COP1. Furthermore, we show that C27 interacts in yeast with the REPRESSOR OF UV-B PHOTOMORPHOGENESIS proteins, RUP1 and RUP2, which are negative regulators of UVR8 function. Hence the C27 region has a key role in UVR8 function. PMID:22988111

A computational approach identifies two regions of Hepatitis C Virus E1 protein as interacting domains involved in viral fusion process

Directory of Open Access Journals (Sweden)

El Sawaf Gamal

2009-07-01

Full Text Available Abstract Background The E1 protein of Hepatitis C Virus (HCV can be dissected into two distinct hydrophobic regions: a central domain containing an hypothetical fusion peptide (FP, and a C-terminal domain (CT comprising two segments, a pre-anchor and a trans-membrane (TM region. In the currently accepted model of the viral fusion process, the FP and the TM regions are considered to be closely juxtaposed in the post-fusion structure and their physical interaction cannot be excluded. In the present study, we took advantage of the natural sequence variability present among HCV strains to test, by purely sequence-based computational tools, the hypothesis that in this virus the fusion process involves the physical interaction of the FP and CT regions of E1. Results Two computational approaches were applied. The first one is based on the co-evolution paradigm of interacting peptides and consequently on the correlation between the distance matrices generated by the sequence alignment method applied to FP and CT primary structures, respectively. In spite of the relatively low random genetic drift between genotypes, co-evolution analysis of sequences from five HCV genotypes revealed a greater correlation between the FP and CT domains than respect to a control HCV sequence from Core protein, so giving a clear, albeit still inconclusive, support to the physical interaction hypothesis. The second approach relies upon a non-linear signal analysis method widely used in protein science called Recurrence Quantification Analysis (RQA. This method allows for a direct comparison of domains for the presence of common hydrophobicity patterns, on which the physical interaction is based upon. RQA greatly strengthened the reliability of the hypothesis by the scoring of a lot of cross-recurrences between FP and CT peptides hydrophobicity patterning largely outnumbering chance expectations and pointing to putative interaction sites. Intriguingly, mutations in the CT

Design and field measurement of the BEPC-II interaction region dual-aperture quadrupoles

International Nuclear Information System (INIS)

Yin, Z.S.; Wu, Y.Z.; Zhang, J.F.; Chen, W.; Li, Y.J.; Li, L.; Hou, R.; Yin, B.G.; Sun, X.J.; Ren, F.L.; Wang, F.A.; Chen, F.S.; Yu, C.H.; Chen, C.

2007-01-01

With the Beijing Electron Positron Collider upgrade project (BEPC-II), two dual-aperture septum-style quadrupole magnets are used in the interaction region for the final focusing of the electron and positron beams. The BEPC-II lattice design calls for the same high quality integral quadrupole field and large good field region in both apertures for each magnet. Two-dimensional contour optimization and pole-end chamfer iteration are used to minimize the systematic harmonic errors. Unexpected non-systematic errors induced by the unsymmetrical structure and the manufacturing errors are compensated with the pole-end shimming. Magnet measurements with rotating coils are performed to guide and confirm the magnet design. This paper discusses the design consideration, optimizing procedure and measurement results of these dual-aperture magnets

Direct measurements of wall shear stress by buried wire gages in a shock-wave boundary-layer interaction region

Science.gov (United States)

Murthy, V. S.; Rose, W. C.

1977-01-01

Detailed measurements of wall shear stress (skin friction) were made with specially developed buried wire gages in the interaction regions of a Mach 2.9 turbulent boundary layer with externally generated shocks. Separation and reattachment points inferred by these measurements support the findings of earlier experiments which used a surface oil flow technique and pitot profile measurements. The measurements further indicate that the boundary layer tends to attain significantly higher skin-friction values downstream of the interaction region as compared to upstream. Comparisons between measured wall shear stress and published results of some theoretical calculation schemes show that the general, but not detailed, behavior is predicted well by such schemes.

Colliding beam physics at Fermilab: interaction regions, beam storage, antiproton cooling, production, and colliding

Energy Technology Data Exchange (ETDEWEB)

Walker, J.K. (ed.)

1977-01-01

The purpose of the colliding beams experment department at Fermilab was to bring about collisions of the stored beams in the energy doubler/saver and main ring, and construct experimental areas with appropriate detectors. To explore the feasibility of using the main ring as a storage device, several studies were carried out to investigate beam growth, loss, and the backgrounds in detectors at possible intersection regions. This range of developments constituted the major topics at the 1977 Summer Study reported here. Emphasis in part one is on interaction regions, beam storage, antiproton cooling, production, and colliding. 40 papers from this part are included in the data base. (GHT)

GANP regulates the choice of DNA repair pathway by DNA-PKcs interaction in AID-dependent IgV region diversification.

Science.gov (United States)

Eid, Mohammed Mansour Abbas; Maeda, Kazuhiko; Almofty, Sarah Ameen; Singh, Shailendra Kumar; Shimoda, Mayuko; Sakaguchi, Nobuo

2014-06-15

RNA export factor germinal center-associated nuclear protein (GANP) interacts with activation-induced cytidine deaminase (AID) and shepherds it from the cytoplasm to the nucleus and toward the IgV region loci in B cells. In this study, we demonstrate a role for GANP in the repair of AID-initiated DNA damage in chicken DT40 B cells to generate IgV region diversity by gene conversion and somatic hypermutation. GANP plays a positive role in IgV region diversification of DT40 B cells in a nonhomologous end joining-proficient state. DNA-PKcs physically interacts with GANP, and this interaction is dissociated by dsDNA breaks induced by a topoisomerase II inhibitor, etoposide, or AID overexpression. GANP affects the choice of DNA repair mechanism in B cells toward homologous recombination rather than nonhomologous end joining repair. Thus, GANP presumably plays a critical role in protection of the rearranged IgV loci by favoring homologous recombination of the DNA breaks under accelerated AID recruitment. Copyright © 2014 by The American Association of Immunologists, Inc.

Interactive handling of regional cerebral blood flow data using a macrolanguage

International Nuclear Information System (INIS)

Sveinsdottir, E.; Schomacker, T.; Lassen, N.A.

1976-01-01

A general image handling software system has been developed for on-line collection, processing and display of gamma camera images (IMAGE system). The most distinguishable feature of the system is the ability for the user to interactively specify sequences, called macros, of basic functions to be performed. Information about a specified sequence is retained in the system, thus enabling new sequences or macros to be defined using already specified sequences. Facilities for parameter setting and parameter transfer between functions, as well as facilities for repetition of a function, are included. Finally, functions, be it basic or macro, can be specified to be iteratively activated using a physiological trigger signal as f.ex. the ECG. In addition, a special program system was developed for handling the dynamic data, from Xenon-133 studies of regional cerebral blood flow (CBF system). Parametric or functional images derived from the CBF system and depicting estimates of regional cerebral blood flow, relative weights of grey matter or other parameters can after computation be handled in the IMAGE system

Recurrent variations of anomalous oxygen in association with a corotating interaction region

Directory of Open Access Journals (Sweden)

M. K. Reuss

Full Text Available The fluxes of anomalous oxygen (E ranging from 3.5-6.8 MeV/amu, as measured by the EPAC instrument on ULYSSES, show a recurrent variation with the solar rotation period, which is anticorrelated with the fluxes of particles accelerated at the shocks of a corotating interaction region (CIR, and correlated with the fluxes of galactic cosmic rays known to be modulated by the CIR. The amplitude of this variation is much higher than expected for galactic cosmic rays of the same rigidity.

Interactive computation of coverage regions for indoor wireless communication

Science.gov (United States)

Abbott, A. Lynn; Bhat, Nitin; Rappaport, Theodore S.

1995-12-01

This paper describes a system which assists in the strategic placement of rf base stations within buildings. Known as the site modeling tool (SMT), this system allows the user to display graphical floor plans and to select base station transceiver parameters, including location and orientation, interactively. The system then computes and highlights estimated coverage regions for each transceiver, enabling the user to assess the total coverage within the building. For single-floor operation, the user can choose between distance-dependent and partition- dependent path-loss models. Similar path-loss models are also available for the case of multiple floors. This paper describes the method used by the system to estimate coverage for both directional and omnidirectional antennas. The site modeling tool is intended to be simple to use by individuals who are not experts at wireless communication system design, and is expected to be very useful in the specification of indoor wireless systems.

Particle-In-Cell Simulations of the Solar Wind Interaction with Lunar Crustal Magnetic Anomalies: Magnetic Cusp Regions

Science.gov (United States)

Poppe, A. R.; Halekas, J. S.; Delory, G. T.; Farrell, W. M.

2012-01-01

As the solar wind is incident upon the lunar surface, it will occasionally encounter lunar crustal remanent magnetic fields. These magnetic fields are small-scale, highly non-dipolar, have strengths up to hundreds of nanotesla, and typically interact with the solar wind in a kinetic fashion. Simulations, theoretical analyses, and spacecraft observations have shown that crustal fields can reflect solar wind protons via a combination of magnetic and electrostatic reflection; however, analyses of surface properties have suggested that protons may still access the lunar surface in the cusp regions of crustal magnetic fields. In this first report from a planned series of studies, we use a 1 1/2-dimensional, electrostatic particle-in-cell code to model the self-consistent interaction between the solar wind, the cusp regions of lunar crustal remanent magnetic fields, and the lunar surface. We describe the self-consistent electrostatic environment within crustal cusp regions and discuss the implications of this work for the role that crustal fields may play regulating space weathering of the lunar surface via proton bombardment.

Selective interaction of heparin with the variable region 3 within surface glycoprotein of laboratory-adapted feline immunodeficiency virus.

Directory of Open Access Journals (Sweden)

Qiong-Ying Hu

Full Text Available Heparan sulfate proteoglycans (HSPG can act as binding receptors for certain laboratory-adapted (TCA strains of feline immunodeficiency virus (FIV and human immunodeficiency virus (HIV. Heparin, a soluble heparin sulfate (HS, can inhibit TCA HIV and FIV entry mediated by HSPG interaction in vitro. In the present study, we further determined the selective interaction of heparin with the V3 loop of TCA of FIV. Our current results indicate that heparin selectively inhibits infection by TCA strains, but not for field isolates (FS. Heparin also specifically interferes with TCA surface glycoprotein (SU binding to CXCR4, by interactions with HSPG binding sites on the V3 loop of the FIV envelope protein. Peptides representing either the N- or C-terminal side of the V3 loop and containing HSPG binding sites were able to compete away the heparin block of TCA SU binding to CXCR4. Heparin does not interfere with the interaction of SU with anti-V3 antibodies that target the CXCR4 binding region or with the interaction between FS FIV and anti-V3 antibodies since FS SU has no HSPG binding sites within the HSPG binding region. Our data show that heparin blocks TCA FIV infection or entry not only through its competition of HSPG on the cell surface interaction with SU, but also by its interference with CXCR4 binding to SU. These studies aid in the design and development of heparin derivatives or analogues that can inhibit steps in virus infection and are informative regarding the HSPG/SU interaction.

Simulating Complex, Cold-region Process Interactions Using a Multi-scale, Variable-complexity Hydrological Model

Science.gov (United States)

Marsh, C.; Pomeroy, J. W.; Wheater, H. S.

2017-12-01

Accurate management of water resources is necessary for social, economic, and environmental sustainability worldwide. In locations with seasonal snowcovers, the accurate prediction of these water resources is further complicated due to frozen soils, solid-phase precipitation, blowing snow transport, and snowcover-vegetation-atmosphere interactions. Complex process interactions and feedbacks are a key feature of hydrological systems and may result in emergent phenomena, i.e., the arising of novel and unexpected properties within a complex system. One example is the feedback associated with blowing snow redistribution, which can lead to drifts that cause locally-increased soil moisture, thus increasing plant growth that in turn subsequently impacts snow redistribution, creating larger drifts. Attempting to simulate these emergent behaviours is a significant challenge, however, and there is concern that process conceptualizations within current models are too incomplete to represent the needed interactions. An improved understanding of the role of emergence in hydrological systems often requires high resolution distributed numerical hydrological models that incorporate the relevant process dynamics. The Canadian Hydrological Model (CHM) provides a novel tool for examining cold region hydrological systems. Key features include efficient terrain representation, allowing simulations at various spatial scales, reduced computational overhead, and a modular process representation allowing for an alternative-hypothesis framework. Using both physics-based and conceptual process representations sourced from long term process studies and the current cold regions literature allows for comparison of process representations and importantly, their ability to produce emergent behaviours. Examining the system in a holistic, process-based manner can hopefully derive important insights and aid in development of improved process representations.

Towards a new LHC Interaction Region design for a luminosity upgrade

CERN Document Server

Strait, J; Limon, P; Mokhov, N V; Sen, T; Zlobin, A V; Brüning, Oliver Sim; Ostojic, R; Rossi, L; Ruggiero, F; Taylor, T; ten Kate, H; Devred, A; Gupta, R; Harrison, M; Peggs, S; Pilat, F; Caspi, S; Gourlay, S; Sabbi, G

2003-01-01

After the LHC operates for several years at nominal parameters, it will be necessary to upgrade it for higher luminosity. Replacing the low-beta insertions with a higher performance design based on advanced superconducting magnets is one of the most straightforward steps in this direction. Preliminary studies show that, with magnet technology that is expected to be developed by early in the next decade, a factor of 2 to 5 reduction in beta* could be achieved with new insertions, as part of an upgrade aimed at a factor of 10 luminosity increase. In this paper we survey several possible second generation LHC interaction regions designs, which address the expected limitations on LHC performance imposed by the baseline insertions.

Towards a new LHC interaction region design for a luminosity upgrade

International Nuclear Information System (INIS)

James Strait et al.

2003-01-01

After the LHC operates for several years at nominal parameters, it will be necessary to upgrade it for higher luminosity. Replacing the low-β insertions with a higher performance design based on advanced superconducting magnets is one of the most straightforward steps in this direction. Preliminary studies show that, with magnet technology that is expected to be developed by early in the next decade, a factor of 2 to 5 reduction in β* could be achieved with new insertions, as part of an upgrade aimed at a factor of 10 luminosity increase. In this paper we survey several possible second generation LHC interaction regions designs, which address the expected limitations on LHC performance imposed by the baseline insertions

Exclusive processes in electron-ion collisions in the dipole formalism

Energy Technology Data Exchange (ETDEWEB)

Cazaroto, E. R.; Navarra, F. S. [Instituto de Fisica, Universidade de Sao Paulo, C.P. 66318, 05314-970 Sao Paulo, SP (Brazil); Carvalho, F. [Departamento de Ciencias Exatas e da Terra, Universidade Federal de Sao Paulo, Campus Diadema, Rua Prof. Artur Riedel, 275, Jd. Eldorado, 09972-270 Diadema, SP (Brazil); Goncalves, V. P. [Instituto de Fisica e Matematica, Universidade Federal de Pelotas, Caixa Postal 354, 96010-900 Pelotas, RS (Brazil)

2013-03-25

We compare the predictions of two saturation models for production of vector mesons and of photons in electron-ion collisions. The models considered are the b-CGC and the rcBK. The calculations were made in the kinematical range of the LHeC and of the future eRHIC.

Government and Governance of Regional Triple Helix Interactions

Science.gov (United States)

Danson, Mike; Todeva, Emanuela

2016-01-01

This conceptual paper contributes to the discussion of the role of regional government and regional Triple Helix constellations driving economic development and growth within regional boundaries. The impact of regionalism and subsidiarity on regional Triple Helix constellations, and the questions of governmentality, governance and institutional…

Dynamical Models of Interactions between Herds Forage and Water Resources in Sahelian Region

Directory of Open Access Journals (Sweden)

Jean Jules Tewa

2014-01-01

Full Text Available Optimal foraging is one of the capital topics nowadays in Sahelian region. The vast majority of feed consumed by ruminants in Sahelian region is still formed by natural pastures. Pastoral constraints are the high variability of available forage and drinking water in space and especially in time (highly seasonal, interannual variability and the scarcity of water resources. The mobility is the main functional and opportunistic adaptation to these constraints. Our goal in this paper is to formalize two dynamical models for interactions between a herd of domesticate animals, forage resources, and water resources inside a given Sahelian area, in order to confirm, explain, and predict by mathematical models some observations about pastoralism in Sahelian region. These models in some contexts can be similar to predator-prey models as forage and water resources can be considered as preys and herd’s animals as predators. These models exhibit very rich dynamics, since it predicts abrupt changes in consumer behaviour and disponibility of forage or water resources. The dynamics exhibits a possible coexistence between herd, resources, and water with alternative peaks in their trajectories.

Regional mission impossible? : The Twente Region and the University of Twente

NARCIS (Netherlands)

Kopelyan, Sofya; Nieth, Lisa Johanna

2018-01-01

A well-functioning regional innovation system involves a lot of communication and interaction among the actors. However, sometimes the communication and interaction create tensions impeding regional development. In order to explore the reasons behind this, this study looks at the relationships

Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology

DEFF Research Database (Denmark)

Rossin, Elizabeth J.; Hansen, Kasper Lage; Raychaudhuri, Soumya

2011-01-01

Genome-wide association studies (GWAS) have defined over 150 genomic regions unequivocally containing variation predisposing to immune-mediated disease. Inferring disease biology from these observations, however, hinges on our ability to discover the molecular processes being perturbed by these r......Genome-wide association studies (GWAS) have defined over 150 genomic regions unequivocally containing variation predisposing to immune-mediated disease. Inferring disease biology from these observations, however, hinges on our ability to discover the molecular processes being perturbed...... in rheumatoid arthritis (RA) and Crohn's disease (CD) GWAS, we build protein-protein interaction (PPI) networks for genes within associated loci and find abundant physical interactions between protein products of associated genes. We apply multiple permutation approaches to show that these networks are more...... that the RA and CD networks have predictive power by demonstrating that proteins in these networks, not encoded in the confirmed list of disease associated loci, are significantly enriched for association to the phenotypes in question in extended GWAS analysis. Finally, we test our method in 3 non...

Nuclear proteins interacting with the promoter region of the human granulocyte/macrophage colony-stimulating factor gene

International Nuclear Information System (INIS)

Shannon, M.F.; Gamble, J.R.; Vadas, M.A.

1988-01-01

The gene for human granulocyte/macrophage colony-stimulating factor (GM-CSF) is expressed in a tissue-specific as well as an activation-dependent manner. The interaction of nuclear proteins with the promoter region of the GM-CSF gene that is likely to be responsible for this pattern of GM-CSF expression was investigated. The authors show that nuclear proteins interact with DNA fragments from the GM-CSF promoter in a cell-specific manner. A region spanning two cytokine-specific sequences, cytokine 1 (CK-1, 5', GAGATTCCAC 3') and cytokine 2 (CK-2, 5' TCAGGTA 3') bound two nuclear proteins from GM-CSF-expressing cells in gel retardation assays. NF-GMb was inducible with phorbol 12-myristate 13-acetate and accompanied induction of GM-CSF message. NF-GMb was absent in cell lines not producing GM-CSF, some of which had other distinct binding proteins. NF-GMa and NF-GMb eluted from a heparin-Sepharose column at 0.3 and 0.6 M KCl, respectively. They hypothesize that the sequences CK-1 and CK-2 bind specific proteins and regulate GM-CSF transcription

A functional interaction approach to the definition of meso regions: The case of the Czech Republic

Directory of Open Access Journals (Sweden)

Erlebach Martin

2016-06-01

Full Text Available The definition of functional meso regions for the territory of the Czech Republic is articulated in this article. Functional regions reflect horizontal interactions in space and are presented as a useful tool for various types of geographical analyses, and also for spatial planning, economic policy designs, etc. This paper attempts to add to the discussion on the need to delineate areal units at different hierarchical levels, and to understand the functional flows and spatial behaviours of the population in a given space. Three agglomerative methods are applied in the paper (the CURDS regionalisation algorithm, Intramax, and cluster analysis, and they have not been used previously in Czech geography for the delineation of functional meso regions. Existing functional regions at the micro-level, based on daily travel-to-work flows from the 2001 census, have served as the building blocks. The analyses have produced five regional systems at the meso level, based on daily labour commuting movements of the population. Basic statistics and a characterisation of these systems are provided in this paper.

REGIONAL AIR-SEA INTERACTION (RASI) GAP WIND AND COASTAL UPWELLING EVENTS CLIMATOLOGY GULF OF PAPAGAYO, COSTA RICA V1

Data.gov (United States)

National Aeronautics and Space Administration — The Regional Air-Sea Interactions (RASI) Gap Wind and Coastal Upwelling Events Climatology Gulf of Papagayo, Costa Rica dataset was created using an automated...

Conceptual Design of the LHC Interaction Region Upgrade Phase-I

CERN Document Server

Ostojic, R; Baglin, V; Ballarino, A; Cerutti, F; Denz, R; Fartoukh, S; Fessia, P; Foraz, K; Fürstner, M; Herr, Werner; Karppinen, M; Kos, N; Mainaud-Durand, H; Mereghetti, A; Muttoni, Y; Nisbet, D; Prin, H; Tock, J P; Van Weelderen, R; Wildner, E

2008-01-01

The LHC is starting operation with beam. The primary goal of CERN and the LHC community is to ensure that the collider is operated efficiently and that it achieves nominal performance in the shortest term. Since several years the community has been discussing the directions for maximizing the physics reach of the LHC by upgrading the experiments, in particular ATLAS and CMS, the LHC machine and the CERN proton injector complex, in a phased approach. The first phase of the LHC interaction region upgrade was approved by Council in December 2007. This phase relies on the mature Nb-Ti superconducting magnet technology with the target of increasing the LHC luminosity to 2 to 3 10^34 cm^-2s^-1, while maximising the use of the existing infrastructure. In this report, we present the goals and the proposed conceptual solutions for the LHC IR Upgrade Phase-I which include the recommendations of the conceptual design review.

SOURCE REGIONS OF THE TYPE II RADIO BURST OBSERVED DURING A CME–CME INTERACTION ON 2013 MAY 22

International Nuclear Information System (INIS)

Mäkelä, P.; Reiner, M. J.; Akiyama, S.; Gopalswamy, N.; Krupar, V.

2016-01-01

We report on our study of radio source regions during the type II radio burst on 2013 May 22 based on direction-finding analysis of the Wind /WAVES and STEREO /WAVES (SWAVES) radio observations at decameter–hectometric wavelengths. The type II emission showed an enhancement that coincided with the interaction of two coronal mass ejections (CMEs) launched in sequence along closely spaced trajectories. The triangulation of the SWAVES source directions posited the ecliptic projections of the radio sources near the line connecting the Sun and the STEREO-A spacecraft. The WAVES and SWAVES source directions revealed shifts in the latitude of the radio source, indicating that the spatial location of the dominant source of the type II emission varies during the CME–CME interaction. The WAVES source directions close to 1 MHz frequencies matched the location of the leading edge of the primary CME seen in the images of the LASCO/C3 coronagraph. This correspondence of spatial locations at both wavelengths confirms that the CME–CME interaction region is the source of the type II enhancement. Comparison of radio and white-light observations also showed that at lower frequencies scattering significantly affects radio wave propagation.

Interactive and individual effects of sensory potentiation and region-specific changes in excitability after spinal cord injury.

Science.gov (United States)

Hoffman, N; Parker, D

2011-12-29

While promoting regeneration across lesion sites is a main focus of research into spinal injury, changes also occur in the sublesion spinal cord and its sensory inputs. However, how these varied effects relate to recovery remains largely unknown. Here, we have examined changes in sensory inputs and region-specific changes in spinal cord excitability after spinal cord lesions in the lamprey, a model system for studying regeneration and functional recovery, and related the changes to the degree of locomotor recovery.Proprioceptive responses below lesion sites were potentiated and their rate of adaptation reduced 8-10 weeks after lesioning (i.e. when animals usually showed significant locomotor recovery). These effects were associated with changes in cellular properties that were consistent with an increase in proprioceptor excitability. However, the changes in proprioceptive inputs did not correlate with the degree of locomotor recovery. There were region-specific changes in spinal cord excitability below lesion sites. In isolation, these excitability changes also did not correlate with the degree of locomotor recovery, but in this case, there were significant interactions between the magnitude of stimulation-evoked responses across the lesion site (used to assess the extent of regeneration) and sublesion changes in excitability. These interactions differed in animals that recovered well or poorly, suggesting that the nature of this interaction influenced recovery. These results add to the evidence for diverse changes in the spinal cord after injury, and suggest that regenerated inputs and their interactions with sublesion networks influence the degree of functional recovery. Copyright © 2011 IBRO. Published by Elsevier Ltd. All rights reserved.

Vibrational Markovian modelling of footprints after the interaction of antibiotics with the packaging region of HIV type 1.

Science.gov (United States)

Díaz, Humberto González; de Armas, Ronal Ramos; Molina, Reinaldo

2003-11-01

The design of novel anti-HIV compounds has now become a crucial area for scientists working in numerous interrelated fields of science such as molecular biology, medicinal chemistry, mathematical biology, molecular modelling and bioinformatics. In this context, the development of simple but physically meaningful mathematical models to represent the interaction between anti-HIV drugs and their biological targets is of major interest. One such area currently under investigation involves the targets in the HIV-RNA-packaging region. In the work described here, we applied Markov chain theory in an attempt to describe the interaction between the antibiotic paromomycin and the packaging region of the RNA in Type-1 HIV. In this model, a nucleic acid squeezed graph is used. The vertices of the graph represent the nucleotides while the edges are the phosphodiester bonds. A stochastic (Markovian) matrix was subsequently defined on this graph, an operation that codifies the probabilities of interaction between specific nucleotides of HIV-RNA and the antibiotic. The strength of these local interactions can be calculated through an inelastic vibrational model. The successive power of this matrix codifies the probabilities with which the vibrations after drug-RNA interactions vanish along the polynucleotide main chain. The sums of self-return probabilities in the k-vicinity of each nucleotide represent physically meaningful descriptors. A linear discriminant function was developed and gave rise to excellent discrimination in 80.8% of interacting and footprinted nucleotides. The Jackknife method was employed to assess the stability and predictability of the model. On the other hand, a linear regression model predicted the local binding affinity constants between a specific nucleotide and the antibiotic (R(2)=0.91, Q(2)=0.86). These kinds of models could play an important role either in the discovery of new anti-HIV compounds or the study of their mode of action.

Polarized e-bunch acceleration at Cornell RCS: Tentative tracking simulations

Energy Technology Data Exchange (ETDEWEB)

Meot, F. [Brookhaven National Lab. (BNL), Upton, NY (United States); Ptitsyn, V. [Brookhaven National Lab. (BNL), Upton, NY (United States); Ranjbar, V. [Brookhaven National Lab. (BNL), Upton, NY (United States); Rubin, D. [Brookhaven National Lab. (BNL), Upton, NY (United States)

2017-10-19

An option as an injector into eRHIC electron storage ring is a rapid-cyclic synchrotron (RCS). Rapid acceleration of polarized electron bunches has never been done, Cornell synchrotron might lend itself to dedicated tests, which is to be first explored based on numerical investigations. This paper is a very preliminary introduction to the topic.

Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology

Science.gov (United States)

Rossin, Elizabeth J.; Lage, Kasper; Raychaudhuri, Soumya; Xavier, Ramnik J.; Tatar, Diana; Benita, Yair

2011-01-01

Genome-wide association studies (GWAS) have defined over 150 genomic regions unequivocally containing variation predisposing to immune-mediated disease. Inferring disease biology from these observations, however, hinges on our ability to discover the molecular processes being perturbed by these risk variants. It has previously been observed that different genes harboring causal mutations for the same Mendelian disease often physically interact. We sought to evaluate the degree to which this is true of genes within strongly associated loci in complex disease. Using sets of loci defined in rheumatoid arthritis (RA) and Crohn's disease (CD) GWAS, we build protein–protein interaction (PPI) networks for genes within associated loci and find abundant physical interactions between protein products of associated genes. We apply multiple permutation approaches to show that these networks are more densely connected than chance expectation. To confirm biological relevance, we show that the components of the networks tend to be expressed in similar tissues relevant to the phenotypes in question, suggesting the network indicates common underlying processes perturbed by risk loci. Furthermore, we show that the RA and CD networks have predictive power by demonstrating that proteins in these networks, not encoded in the confirmed list of disease associated loci, are significantly enriched for association to the phenotypes in question in extended GWAS analysis. Finally, we test our method in 3 non-immune traits to assess its applicability to complex traits in general. We find that genes in loci associated to height and lipid levels assemble into significantly connected networks but did not detect excess connectivity among Type 2 Diabetes (T2D) loci beyond chance. Taken together, our results constitute evidence that, for many of the complex diseases studied here, common genetic associations implicate regions encoding proteins that physically interact in a preferential manner, in

Experimental evidence of biological interactions among different isolates of Trypanosoma cruzi from the Chaco Region.

Directory of Open Access Journals (Sweden)

Paula G Ragone

Full Text Available Many infectious diseases arise from co-infections or re-infections with more than one genotype of the same pathogen. These mixed infections could alter host fitness, the severity of symptoms, success in pathogen transmission and the epidemiology of the disease. Trypanosoma cruzi, the etiological agent of Chagas disease, exhibits a high biological variability often correlated with its genetic diversity. Here, we developed an experimental approach in order to evaluate biological interaction between three T. cruzi isolates belonging to different Discrete Typing Units (DTUs TcIII, TcV and TcVI. These isolates were obtained from a restricted geographical area in the Chaco Region. Different mixed infections involving combinations of two isolates (TcIII + TcV, TcIII + TcVI and TcV + TcVI were studied in a mouse model. The parameters evaluated were number of parasites circulating in peripheral blood, histopathology and genetic characterization of each DTU in different tissues by DNA hybridization probes. We found a predominance of TcVI isolate in blood and tissues respect to TcIII and TcV; and a decrease of the inflammatory response in heart when the damage of mice infected with TcVI and TcIII + TcVI mixture were compared. In addition, simultaneous presence of two isolates in the same tissue was not detected. Our results show that biological interactions between isolates with different biological behaviors lead to changes in their biological properties. The occurrence of interactions among different genotypes of T. cruzi observed in our mouse model suggests that these phenomena could also occur in natural cycles in the Chaco Region.

Superluminous Transients at AGN Centers from Interaction between Black Hole Disk Winds and Broad-line Region Clouds

Energy Technology Data Exchange (ETDEWEB)

Moriya, Takashi J.; Tanaka, Masaomi; Ohsuga, Ken [Division of Theoretical Astronomy, National Astronomical Observatory of Japan, National Institutes of Natural Sciences, 2-21-1 Osawa, Mitaka, Tokyo 181-8588 (Japan); Morokuma, Tomoki, E-mail: takashi.moriya@nao.ac.jp [Institute of Astronomy, Graduate School of Science, The University of Tokyo, 2-21-1 Osawa, Mitaka, Tokyo 181-0015 (Japan)

2017-07-10

We propose that superluminous transients that appear at central regions of active galactic nuclei (AGNs) such as CSS100217:102913+404220 (CSS100217) and PS16dtm, which reach near- or super-Eddington luminosities of the central black holes, are powered by the interaction between accretion-disk winds and clouds in broad-line regions (BLRs) surrounding them. If the disk luminosity temporarily increases by, e.g., limit–cycle oscillations, leading to a powerful radiatively driven wind, strong shock waves propagate in the BLR. Because the dense clouds in the AGN BLRs typically have similar densities to those found in SNe IIn, strong radiative shocks emerge and efficiently convert the ejecta kinetic energy to radiation. As a result, transients similar to SNe IIn can be observed at AGN central regions. Since a typical black hole disk-wind velocity is ≃0.1 c , where c is the speed of light, the ejecta kinetic energy is expected to be ≃10{sup 52} erg when ≃1 M {sub ⊙} is ejected. This kinetic energy is transformed to radiation energy in a timescale for the wind to sweep up a similar mass to itself in the BLR, which is a few hundred days. Therefore, both luminosities (∼10{sup 44} erg s{sup −1}) and timescales (∼100 days) of the superluminous transients from AGN central regions match those expected in our interaction model. If CSS100217 and PS16dtm are related to the AGN activities triggered by limit–cycle oscillations, they become bright again in coming years or decades.

Interaction between central volcanoes and regional tectonics along divergent plate boundaries: Askja, Iceland

Science.gov (United States)

Trippanera, Daniele; Ruch, Joël; Acocella, Valerio; Thordarson, Thor; Urbani, Stefano

2018-01-01

Activity within magmatic divergent plate boundaries (MDPB) focuses along both regional fissure swarms and central volcanoes. An ideal place to investigate their mutual relationship is the Askja central volcano in Iceland. Askja consists of three nested calderas (namely Kollur, Askja and Öskjuvatn) located within a hyaloclastite massif along the NNE-SSW trending Icelandic MDPB. We performed an extensive field-based structural analysis supported by a remote sensing study of tectonic and volcanic features of Askja's calderas and of the eastern flank of the hyaloclastite massif. In the massif, volcano-tectonic structures trend N 10° E to N 40° E, but they vary around the Askja caldera being both parallel to the caldera rim and cross-cutting on the Western side. Structural trends around the Öskjuvatn caldera are typically rim parallel. Volcanic vents and dikes are preferentially distributed along the caldera ring faults; however, they follow the NNE-SSW regional structures when located outside the calderas. Our results highlight that the Askja volcano displays a balanced amount of regional (fissure-swarm related) and local (shallow-magma-chamber related) tectonic structures along with a mutual interaction among these. This is different from Krafla volcano (to the north of Askja) dominated by regional structures and Grímsvötn (to the South) dominated by local structures. Therefore, Askja represents an intermediate tectono-magmatic setting for volcanoes located in a slow divergent plate boundary. This is also likely in accordance with a northward increase in the spreading rate along the Icelandic MDPB.

Interaction between central volcanoes and regional tectonics along divergent plate boundaries: Askja, Iceland

KAUST Repository

Trippanera, Daniele

2017-12-04

Activity within magmatic divergent plate boundaries (MDPB) focuses along both regional fissure swarms and central volcanoes. An ideal place to investigate their mutual relationship is the Askja central volcano in Iceland. Askja consists of three nested calderas (namely Kollur, Askja and Öskjuvatn) located within a hyaloclastite massif along the NNE-SSW trending Icelandic MDPB. We performed an extensive field-based structural analysis supported by a remote sensing study of tectonic and volcanic features of Askja’s calderas and of the eastern flank of the hyaloclastite massif. In the massif, volcano-tectonic structures trend N 10° E to N 40° E, but they vary around the Askja caldera being both parallel to the caldera rim and cross-cutting on the Western side. Structural trends around the Öskjuvatn caldera are typically rim parallel. Volcanic vents and dikes are preferentially distributed along the caldera ring faults; however, they follow the NNE-SSW regional structures when located outside the calderas. Our results highlight that the Askja volcano displays a balanced amount of regional (fissure-swarm related) and local (shallow-magma-chamber related) tectonic structures along with a mutual interaction among these. This is different from Krafla volcano (to the north of Askja) dominated by regional structures and Grímsvötn (to the South) dominated by local structures. Therefore, Askja represents an intermediate tectono-magmatic setting for volcanoes located in a slow divergent plate boundary. This is also likely in accordance with a northward increase in the spreading rate along the Icelandic MDPB.

High-Affinity Interaction of the K-Ras4B Hypervariable Region with the Ras Active Site

Science.gov (United States)

Chavan, Tanmay S.; Jang, Hyunbum; Khavrutskii, Lyuba; Abraham, Sherwin J.; Banerjee, Avik; Freed, Benjamin C.; Johannessen, Liv; Tarasov, Sergey G.; Gaponenko, Vadim; Nussinov, Ruth; Tarasova, Nadya I.

2015-01-01

Ras proteins are small GTPases that act as signal transducers between cell surface receptors and several intracellular signaling cascades. They contain highly homologous catalytic domains and flexible C-terminal hypervariable regions (HVRs) that differ across Ras isoforms. KRAS is among the most frequently mutated oncogenes in human tumors. Surprisingly, we found that the C-terminal HVR of K-Ras4B, thought to minimally impact the catalytic domain, directly interacts with the active site of the protein. The interaction is almost 100-fold tighter with the GDP-bound than the GTP-bound protein. HVR binding interferes with Ras-Raf interaction, modulates binding to phospholipids, and slightly slows down nucleotide exchange. The data indicate that contrary to previously suggested models of K-Ras4B signaling, HVR plays essential roles in regulation of signaling. High affinity binding of short peptide analogs of HVR to K-Ras active site suggests that targeting this surface with inhibitory synthetic molecules for the therapy of KRAS-dependent tumors is feasible. PMID:26682817

Comparison of various clustered interaction regions with regard to chromatic and dynamic behavior

International Nuclear Information System (INIS)

Leemann, B.; Wrulich, A.

1986-05-01

Clustered interaction regions for the SSC may be preferable from the viewpoint of costs and operation. In going from distributed to clustered IR's the superperiodicity of the machine is reduced and therefore the number of resonances induced by chromaticity correcting sextupoles is increased. This break in symmetry may cause a reduction in dynamic stability. The chromatic and dynamic behavior of the bare lattice is investigated for various cluster configurations. That means only chromaticity correcting sextupoles have been included and no magnetic imperfection errors have been considered. Then, the dynamic apertures of lattices with various IR clustering schemes are compared when random magnetic imperfections are included

Numerical Simulation of Flow Features and Energy Exchange Physics in Near-Wall Region with Fluid-Structure Interaction

Science.gov (United States)

Zhang, Lixiang; Wang, Wenquan; Guo, Yakun

Large eddy simulation is used to explore flow features and energy exchange physics between turbulent flow and structure vibration in the near-wall region with fluid-structure interaction (FSI). The statistical turbulence characteristics in the near-wall region of a vibrating wall, such as the skin frictional coefficient, velocity, pressure, vortices, and the coherent structures have been studied for an aerofoil blade passage of a true three-dimensional hydroturbine. The results show that (i) FSI greatly strengthens the turbulence in the inner region of y+ < 25; and (ii) the energy exchange mechanism between the flow and the vibration depends strongly on the vibration-induced vorticity in the inner region. The structural vibration provokes a frequent action between the low- and high-speed streaks to balance the energy deficit caused by the vibration. The velocity profile in the inner layer near the vibrating wall has a significant distinctness, and the viscosity effect of the fluid in the inner region decreases due to the vibration. The flow features in the inner layer are altered by a suitable wall vibration.

Solar wind interaction with comet 67P: Impacts of corotating interaction regions

Science.gov (United States)

Edberg, N. J. T.; Eriksson, A. I.; Odelstad, E.; Vigren, E.; Andrews, D. J.; Johansson, F.; Burch, J. L.; Carr, C. M.; Cupido, E.; Glassmeier, K.-H.; Goldstein, R.; Halekas, J. S.; Henri, P.; Koenders, C.; Mandt, K.; Mokashi, P.; Nemeth, Z.; Nilsson, H.; Ramstad, R.; Richter, I.; Wieser, G. Stenberg

2016-02-01

We present observations from the Rosetta Plasma Consortium of the effects of stormy solar wind on comet 67P/Churyumov-Gerasimenko. Four corotating interaction regions (CIRs), where the first event has possibly merged with a coronal mass ejection, are traced from Earth via Mars (using Mars Express and Mars Atmosphere and Volatile EvolutioN mission) to comet 67P from October to December 2014. When the comet is 3.1-2.7 AU from the Sun and the neutral outgassing rate ˜1025-1026 s-1, the CIRs significantly influence the cometary plasma environment at altitudes down to 10-30 km. The ionospheric low-energy (˜5 eV) plasma density increases significantly in all events, by a factor of >2 in events 1 and 2 but less in events 3 and 4. The spacecraft potential drops below -20 V upon impact when the flux of electrons increases. The increased density is likely caused by compression of the plasma environment, increased particle impact ionization, and possibly charge exchange processes and acceleration of mass-loaded plasma back to the comet ionosphere. During all events, the fluxes of suprathermal (˜10-100 eV) electrons increase significantly, suggesting that the heating mechanism of these electrons is coupled to the solar wind energy input. At impact the magnetic field strength in the coma increases by a factor of 2-5 as more interplanetary magnetic field piles up around the comet. During two CIR impact events, we observe possible plasma boundaries forming, or moving past Rosetta, as the strong solar wind compresses the cometary plasma environment. We also discuss the possibility of seeing some signatures of the ionospheric response to tail disconnection events.

Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

DEFF Research Database (Denmark)

Zhu, Xuefeng; Wirén, Marianna; Sinha, Indranil

2006-01-01

Mediator exists in a free form containing the Med12, Med13, CDK8, and CycC subunits (the Srb8-11 module) and a smaller form, which lacks these four subunits and associates with RNA polymerase II (Pol II), forming a holoenzyme. We use chromatin immunoprecipitation (ChIP) and DNA microarrays...... to investigate genome-wide localization of Mediator and the Srb8-11 module in fission yeast. Mediator and the Srb8-11 module display similar binding patterns, and interactions with promoters and upstream activating sequences correlate with increased transcription activity. Unexpectedly, Mediator also interacts...... with the downstream coding region of many genes. These interactions display a negative bias for positions closer to the 5' ends of open reading frames (ORFs) and appear functionally important, because downregulation of transcription in a temperature-sensitive med17 mutant strain correlates with increased Mediator...

A Preliminary Interaction Region Design for a Super B-Factory

CERN Document Server

Sullivan, Michael K; Donald, Martin; Ecklund, Stanley; Novokhatski, Alexander; Seeman, John; Wienands, Ulrich

2005-01-01

The success of the two B-Factories (PEP-II and KEKB) has encouraged us to look at design parameters for a B-Factory with a 30-50 times increase in the luminosity of the present machines (L~1e36). In order to achieve this high luminosity, the beta y* values are reduced to 3-2 mm, the bunch spacing is minimized (0.6-0.3 m) and the bunch currents are increased. Total beam currents range from 5-25 A. The interaction region (IR) of these "SuperB" designs presents special challenges. Synchrotron radiation fans from local bending in shared magnets and from upstream sources pose difficulties due to the high power levels in these fans. High-order-mode(HOM)heating, effects that have been seen in the present B-factories, will become much more pronounced with the very short bunches and high beam currents. Masking the detector beam pipe from synchrotron radiation must take into account effects of HOM power generation. Backgrounds that are a function of the luminosity will become very important. We presen...

Deciphering interaction of regional aquifers in Southern Tunisia using hydrochemistry and isotopic tools

International Nuclear Information System (INIS)

Abid, Kamel; Dulinski, Marek; Ammar, Friha Hadj; Rozanski, Kazimierz; Zouari, Kamel

2012-01-01

Groundwater is the most important source of water supply in southern Tunisia. Previous hydrogeologic and isotopic studies carried out in this region revealed the existence of two major aquifer systems: the “Complex Terminal” (CT) and the “Continental Intercalaire” (CI). Turonian carbonates constitute one of the major aquifer levels of the CT multilayered aquifer. It extends over most of southern Tunisia, and its hydrodynamic regime is largely influenced by tectonics, lithology and recharge conditions. Forty-eight groundwater samples from the CI and Turonian aquifers were collected between January and April 2004 for chemical and isotopic analyses. Hydrochemistry and isotopic tools were combined to get an insight into the processes controlling chemical composition of groundwater and wide-scale interaction of these two aquifer systems. Analysis of the dissolved constituents revealed that several processes control the observed chemical composition: (i) incongruent dissolution of carbonate minerals, (ii) dissolution of evaporitic minerals, and (iii) cation exchange. Dissolution alone cannot account for the observed high supersaturation states of groundwater with respect to calcite and dolomite. The observed supersaturation is most probably linked to geogenic CO 2 entering water-bearing horizons of the CT and CI aquifers via deep tectonic faults and discontinuities and subsequent degassing in the exploitation wells. Presence of geogenic CO 2 in the investigated region was confirmed by C isotope data of the DIC reservoir. The radiocarbon content of the Turonian samples varied between 9.5 and 43 pmc. For CI samples generally lower values were recorded, between 3.8 and 22.5 pmc. Stable isotope composition of Turonian groundwater samples varied from −8.3 to −5.3‰ for δ 18 O and from −60 to −25‰ for δ 2 H. The corresponding ranges of δ values for the Continental Intercalaire samples were from −8.9‰ to −6.9‰ for δ 18 O and from −68.2‰ to �

Broadband Amplification of Low-Terahertz Signals Using Axis-Encircling Electrons in a Helically Corrugated Interaction Region

Science.gov (United States)

He, W.; Donaldson, C. R.; Zhang, L.; Ronald, K.; Phelps, A. D. R.; Cross, A. W.

2017-11-01

Experimental results are presented of a broadband, high power, gyrotron traveling wave amplifier (gyro-TWA) operating in the (75-110)-GHz frequency band and based on a helically corrugated interaction region. The second harmonic cyclotron mode of a 55-keV, 1.5-A, axis-encircling electron beam is used to resonantly interact with a traveling TE21 -like eigenwave achieving broadband amplification. The gyro-TWA demonstrates a 3-dB gain bandwidth of at least 5.5 GHz in the experimental measurement with 9 GHz predicted for a wideband drive source with a measured unsaturated output power of 3.4 kW and gain of 36-38 dB. The approach may allow a gyro-TWA to operate at 1 THz.

Serotonin Transporter-Linked Polymorphic Region (5-HTTLPR) Genotype and Stressful Life Events Interact to Predict Preschool-Onset Depression: A Replication and Developmental Extension

Science.gov (United States)

Bogdan, Ryan; Agrawal, Arpana; Gaffrey, Michael S.; Tillman, Rebecca; Luby, Joan L.

2014-01-01

Background: Scientific enthusiasm about gene × environment interactions, spurred by the 5-HTTLPR (serotonin transporter-linked polymorphic region) × SLEs (stressful life events) interaction predicting depression, have recently been tempered by sober realizations of small effects and meta-analyses reaching opposing conclusions. These mixed findings…

The Rev1 interacting region (RIR) motif in the scaffold protein XRCC1 mediates a low-affinity interaction with polynucleotide kinase/phosphatase (PNKP) during DNA single-strand break repair.

Science.gov (United States)

Breslin, Claire; Mani, Rajam S; Fanta, Mesfin; Hoch, Nicolas; Weinfeld, Michael; Caldecott, Keith W

2017-09-29

The scaffold protein X-ray repair cross-complementing 1 (XRCC1) interacts with multiple enzymes involved in DNA base excision repair and single-strand break repair (SSBR) and is important for genetic integrity and normal neurological function. One of the most important interactions of XRCC1 is that with polynucleotide kinase/phosphatase (PNKP), a dual-function DNA kinase/phosphatase that processes damaged DNA termini and that, if mutated, results in ataxia with oculomotor apraxia 4 (AOA4) and microcephaly with early-onset seizures and developmental delay (MCSZ). XRCC1 and PNKP interact via a high-affinity phosphorylation-dependent interaction site in XRCC1 and a forkhead-associated domain in PNKP. Here, we identified using biochemical and biophysical approaches a second PNKP interaction site in XRCC1 that binds PNKP with lower affinity and independently of XRCC1 phosphorylation. However, this interaction nevertheless stimulated PNKP activity and promoted SSBR and cell survival. The low-affinity interaction site required the highly conserved Rev1-interacting region (RIR) motif in XRCC1 and included three critical and evolutionarily invariant phenylalanine residues. We propose a bipartite interaction model in which the previously identified high-affinity interaction acts as a molecular tether, holding XRCC1 and PNKP together and thereby promoting the low-affinity interaction identified here, which then stimulates PNKP directly. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Regional regularities for the even-even nuclei in intermediate mass region

International Nuclear Information System (INIS)

Varshney, Mani; Singh, M.; Gupta, D.K.; Singh, Yuvraj; Gupta, K.K.; Bihari, Chhail; Sharma, Aparna; Varshney, A.K.

2011-01-01

With the development of experimental techniques more and more nuclear data are accumulated and compiled for over five decades. The proton neutron interaction has been considered the key ingredient in the development of collectivity and ultimately the deformation in atomic nuclei. The purpose of the present study is to analyze the growth of R4/2 in different mass regions. The rate of growth regions in regions having proton number Z = 38, 54, 60 and 76 with changing neutron number where the interaction between particle - particle, particle - hole and hole - hole

Exploring the Relation between the Degree of Novelty of Innovations and User-producer Interaction across Different Income Regions

DEFF Research Database (Denmark)

Harirchi, Gouya; Chaminade, Cristina

2014-01-01

User–producer interactions have been recognized as important for innovation. With the rapid growth of emerging economies’ markets, and an increasing degree of technological sophistication of both users and producers in those markets, user–producer interaction is becoming global. Using original firm......-level data, this paper explores how collaboration with users in different income regions affects the degree of innovations’ novelty. We find that collaborating with international users is positively related to higher degrees of novelty. Furthermore, firms in low- and middle income countries will benefit more...... from south–south user collaboration than a south–north one....

Muon and neutron observations in connection with the corotating interaction regions

Science.gov (United States)

da Silva, M. R.; Dal Lago, A.; Echer, E.; de Lucas, A.; Gonzalez, W. D.; Schuch, N. J.; Munakata, K.; Vieira, L. E. A.; Guarnieri, F. L.

Ground cosmic ray observations are used for studying several kinds of interplanetary structures. The cosmic ray data has different responses to each kind of interplanetary structure. This article has as objective to study cosmic ray muon and neutron signatures due to the passage of corotating interaction region (CIR) in the interplanetary medium, and identify the signatures in the cosmic ray data due to these events. The cosmic ray muon data used in this work are recorded by the multidirectional muon detector installed at INPE’s Observatório Espacial do Sul OES/CRSPE/INPE-MCT, in São Martinho da Serra, RS (Brazil) and the neutron data was recorded by the neutron monitor installed in Newark (USA). The CIR events were selected in the period from 2001 to 2004. CIRs clearly affect cosmic ray density in the interplanetary medium in the Earth’s vicinity, where the magnetic field plays an important role.

Interaction of a nodule specific, trans-acting factor with distinct DNA elements in the soybean leghaemoglobin Ibc(3) 5' upstream region

DEFF Research Database (Denmark)

Jensen, Erik Østergaard; Marcker, Kjeld A; Schell, J

1988-01-01

Nuclear extracts from soybean nodules, leaves and roots were used to investigate protein-DNA interactions in the 5' upstream (promoter) region of the soybean leghaemoglobin lbc(3) gene. Two distinct regions were identified which strongly bind a nodule specific factor. A Bal31 deletion analysis......, but with different affinities. Elements 1 and 2 share a common motif, although their AT-rich DNA sequences differ. Element 2 is highly conserved at an analogous position in other soybean lb gene 5' upstream regions. Udgivelsesdato: 1988-May...

Beam dynamics of the interaction region solenoid in a linear collider due to a crossing angle

Directory of Open Access Journals (Sweden)

P. Tenenbaum

2003-06-01

Full Text Available Future linear colliders may require a nonzero crossing angle between the two beams at the interaction point (IP. This requirement in turn implies that the beams will pass through the strong interaction region solenoid with an angle, and thus that the component of the solenoidal field perpendicular to the beam trajectory is nonzero. The interaction of the beam and the solenoidal field in the presence of a crossing angle will cause optical effects not observed for beams passing through the solenoid on axis; these effects include dispersion, deflection of the beam, and synchrotron radiation effects. For a purely solenoidal field, the optical effects which are relevant to luminosity exactly cancel at the IP when the influence of the solenoid’s fringe field is taken into account. Beam size growth due to synchrotron radiation in the solenoid is proportional to the fifth power of the product of the solenoidal field, the length of the solenoid, and the crossing angle. Examples based on proposed linear collider detector solenoid configurations are presented.

Quadrupole beam-based alignment in the RHIC interaction regions

International Nuclear Information System (INIS)

Ziegler, J.; Satogata, T.

2011-01-01

Continued beam-based alignment (BBA) efforts have provided significant benefit to both heavy ion and polarized proton operations at RHIC. Recent studies demonstrated previously unknown systematic beam position monitor (BPM) offset errors and produced accurate measurements of individual BPM offsets in the experiment interaction regions. Here we describe the algorithm used to collect and analyze data during the 2010 and early 2011 RHIC runs and the results of these measurements. BBA data has been collected over the past two runs for all three of the active experimental IRs at RHIC, updating results from the 2005 run which were taken with incorrectly installed offsets. The technique was successfully applied to expose a systematic misuse of the BPM survey offsets in the control system. This is likely to benefit polarized proton operations as polarization transmission through acceleration ramps depends on RMS orbit control in the arcs, but a quantitative understanding of its impact is still under active investigation. Data taking is ongoing as are refinements to the BBA technique aimed at reducing systematic errors and properly accounting for dispersive effects. Further development may focus on non-triplet BPMs such as those located near snakes, or arc quadrupoles that do not have individually shunted power supplies (a prerequisite for the current method) and as such, will require a modified procedure.

Extended interacting boson model description of Pd nuclei in the A∼100 transitional region

Directory of Open Access Journals (Sweden)

Böyükata M.

2014-03-01

Full Text Available Studies of even-even nuclei in the A∼100 transitional mass region within the framework of the interacting boson model-1 (IBM-1 have been expanded down to 98Pd nuclei to compare the calculation with new experimental results from measurements obtained at the Institute of Nuclear Physics in Cologne. The low-lying energy levels and the E2 transition rates of 98−100Pd nuclei are investigated and their geometric structures are described in the present work. We have also focused on the new B(E2:21+ → 01+ values of 112,114Pd nuclei to compare with previously calculated values.

Effective interactions in p-shell nuclei and the realistic interactions - I

International Nuclear Information System (INIS)

Upadhyaya, G.K.; Joshi, K.P.

1984-04-01

The effective interaction of Jain et al. derived from the Yale interaction by including the prominent core polarization diagrams is analyzed in terms of the interaction radial integrals and their spin tensor components. The interaction is also compared with some phenomenological effective interactions. The general features of the effective force in the 1 p shell region are discussed. (author)

Structure-function analysis of RBP-J-interacting and tubulin-associated (RITA) reveals regions critical for repression of Notch target genes.

Science.gov (United States)

Tabaja, Nassif; Yuan, Zhenyu; Oswald, Franz; Kovall, Rhett A

2017-06-23

The Notch pathway is a cell-to-cell signaling mechanism that is essential for tissue development and maintenance, and aberrant Notch signaling has been implicated in various cancers, congenital defects, and cardiovascular diseases. Notch signaling activates the expression of target genes, which are regulated by the transcription factor CSL (CBF1/RBP-J, Su(H), Lag-1). CSL interacts with both transcriptional corepressor and coactivator proteins, functioning as both a repressor and activator, respectively. Although Notch activation complexes are relatively well understood at the structural level, less is known about how CSL interacts with corepressors. Recently, a new RBP-J (mammalian CSL ortholog)-interacting protein termed RITA has been identified and shown to export RBP-J out of the nucleus, thereby leading to the down-regulation of Notch target gene expression. However, the molecular details of RBP-J/RITA interactions are unclear. Here, using a combination of biochemical/cellular, structural, and biophysical techniques, we demonstrate that endogenous RBP-J and RITA proteins interact in cells, map the binding regions necessary for RBP-J·RITA complex formation, and determine the X-ray structure of the RBP-J·RITA complex bound to DNA. To validate the structure and glean more insights into function, we tested structure-based RBP-J and RITA mutants with biochemical/cellular assays and isothermal titration calorimetry. Whereas our structural and biophysical studies demonstrate that RITA binds RBP-J similarly to the RAM (RBP-J-associated molecule) domain of Notch, our biochemical and cellular assays suggest that RITA interacts with additional regions in RBP-J. Taken together, these results provide molecular insights into the mechanism of RITA-mediated regulation of Notch signaling, contributing to our understanding of how CSL functions as a transcriptional repressor of Notch target genes. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Hadron-nucleus interactions in the nucleon resonance region

Energy Technology Data Exchange (ETDEWEB)

Gessler, Stefanie

2017-06-15

Experiments with high-energy hadron beams have found renewed attention. In the near future nuclear studies with hadron beams are planned at least at two facilities, namely J-PARC in Japan and GSI/FAIR. The aim of this work is an exploratory investigation of interactions of mesons and baryons with nuclei at energies of interest for future research with antiprotons at FAIR. The theoretical discussion is started with an introductory presentation of the optical model and Eikonal theory as appropriate tools for the description of scattering processes at high energies. In antiproton interactions with nucleons and nuclei, annihilation processes into pions are playing the major role for the reaction dynamics. Therefore, we consider first the interactions of pions with nuclei by deriving an extended selfenergy scheme for a large range of incident pion energies. In order to have a uniform description over a broad energy interval, the existing approaches had to be reconsidered and in essential parts reformulated and extended. A central result is the treatment of pion-nucleus self-energies from high lying N{sup *} resonances. Only by including those channels in a proper manner into the extended pion optical potential, pion-nucleus scattering could be described over the required large energy range. At low energies the well known Kisslinger potential is recapped. Next, the same type of reaction theory is used to analyze antiproton-nucleon and nucleus scattering from low to highly relativistic energies. The reaction dynamics of antiproton interactions with nuclear targets is discussed. We start with a new approach to antiproton-nucleon scattering. A free-space antiproton-nucleon T-matrix is derived, covering an energy range as wide as from 100 MeV up to 15 GeV. Eikonal theory is used to describe the antiproton scattering amplitudes in momentum and in coordinate space. We consider, in particular, interactions with nuclei at energies around and well above 1 GeV. The antiproton

Hadron-nucleus interactions in the nucleon resonance region

International Nuclear Information System (INIS)

Gessler, Stefanie

2017-06-01

Experiments with high-energy hadron beams have found renewed attention. In the near future nuclear studies with hadron beams are planned at least at two facilities, namely J-PARC in Japan and GSI/FAIR. The aim of this work is an exploratory investigation of interactions of mesons and baryons with nuclei at energies of interest for future research with antiprotons at FAIR. The theoretical discussion is started with an introductory presentation of the optical model and Eikonal theory as appropriate tools for the description of scattering processes at high energies. In antiproton interactions with nucleons and nuclei, annihilation processes into pions are playing the major role for the reaction dynamics. Therefore, we consider first the interactions of pions with nuclei by deriving an extended selfenergy scheme for a large range of incident pion energies. In order to have a uniform description over a broad energy interval, the existing approaches had to be reconsidered and in essential parts reformulated and extended. A central result is the treatment of pion-nucleus self-energies from high lying N * resonances. Only by including those channels in a proper manner into the extended pion optical potential, pion-nucleus scattering could be described over the required large energy range. At low energies the well known Kisslinger potential is recapped. Next, the same type of reaction theory is used to analyze antiproton-nucleon and nucleus scattering from low to highly relativistic energies. The reaction dynamics of antiproton interactions with nuclear targets is discussed. We start with a new approach to antiproton-nucleon scattering. A free-space antiproton-nucleon T-matrix is derived, covering an energy range as wide as from 100 MeV up to 15 GeV. Eikonal theory is used to describe the antiproton scattering amplitudes in momentum and in coordinate space. We consider, in particular, interactions with nuclei at energies around and well above 1 GeV. The antiproton

Patterns of interactive learning in a high tech region

NARCIS (Netherlands)

Meeus, M.T.H.; Oerlemans, L.A.G.; Hage, J.

2001-01-01

This paper aims at developing a theoretical framework that explains levels of interactive learning. Interactive learning is defined as the exchange and sharing of knowledge resources conducive to innovation between an innovator firm, its suppliers, and/or its customers. Our research question is: Why

Possible interaction between thermal electrons and vibrationally excited N2 in the lower E-region

Directory of Open Access Journals (Sweden)

K.-I. Oyama

2011-03-01

Full Text Available As one of the tasks to find the energy source(s of thermal electrons, which elevate(s electron temperature higher than neutral temperature in the lower ionosphere E-region, energy distribution function of thermal electron was measured with a sounding rocket at the heights of 93–131 km by the applying second harmonic method. The energy distribution function showed a clear hump at the energy of ~0.4 eV. In order to find the reason of the hump, we conducted laboratory experiment. We studied difference of the energy distribution functions of electrons in thermal energy range, which were measured with and without EUV radiation to plasma of N2/Ar and N2/O2 gas mixture respectively. For N2/Ar gas mixture plasma, the hump is not clearly identified in the energy distribution of thermal electrons. On the other hand for N2/O2 gas mixture, which contains vibrationally excited N2, a clear hump is found when irradiated by EUV. The laboratory experiment seems to suggest that the hump is produced as a result of interaction between vibrationally excited N2 and thermal electrons, and this interaction is the most probable heating source for the electrons of thermal energy range in the lower E-region. It is also suggested that energy distribution of the electrons in high energy part may not be Maxwellian, and DC probe measures the electrons which are non Maxwellian, and therefore "electron temperature" is calculated higher.

Interaction of cationic drugs with liposomes.

Science.gov (United States)

Howell, Brett A; Chauhan, Anuj

2009-10-20

Interactions between cationic drugs and anionic liposomes were studied by measuring binding of drugs and the effect of binding on liposome permeability. The measurements were analyzed in the context of a continuum model based on electrostatic interactions and a Langmuir isotherm. Experiments and modeling indicate that, although electrostatic interactions are important, the fraction of drug sequestered in the double-layer is negligible. The majority of drug enters the bilayer with the charged regions interacting with the charged lipid head groups and the lipophilic regions associated with the bilayer. The partitioning of the drug can be described by a Langmuir isotherm with the electrostatic interactions increasing the sublayer concentration of the drug. The binding isotherms are similar for all tricyclic antidepressants (TCA). Bupivacaine (BUP) binds significantly less compared to TCA because its structure is such that the charged region has minimal interactions with the lipid heads once the BUP molecule partitions inside the bilayer. Conversely, the TCAs are linear with distinct hydrophilic and lipophilic regions, allowing the lipophilic regions to lie inside the bilayer and the hydrophilic regions to protrude out. This conformation maximizes the permeability of the bilayer, leading to an increased release of a hydrophilic fluorescent dye from liposomes.

A New WRF-Chem Treatment for Studying Regional Scale Impacts of Cloud-Aerosol Interactions in Parameterized Cumuli

Energy Technology Data Exchange (ETDEWEB)

Berg, Larry K.; Shrivastava, ManishKumar B.; Easter, Richard C.; Fast, Jerome D.; Chapman, Elaine G.; Liu, Ying

2015-01-01

A new treatment of cloud-aerosol interactions within parameterized shallow and deep convection has been implemented in WRF-Chem that can be used to better understand the aerosol lifecycle over regional to synoptic scales. The modifications to the model to represent cloud-aerosol interactions include treatment of the cloud dropletnumber mixing ratio; key cloud microphysical and macrophysical parameters (including the updraft fractional area, updraft and downdraft mass fluxes, and entrainment) averaged over the population of shallow clouds, or a single deep convective cloud; and vertical transport, activation/resuspension, aqueous chemistry, and wet removal of aerosol and trace gases in warm clouds. Thesechanges have been implemented in both the WRF-Chem chemistry packages as well as the Kain-Fritsch cumulus parameterization that has been modified to better represent shallow convective clouds. Preliminary testing of the modified WRF-Chem has been completed using observations from the Cumulus Humilis Aerosol Processing Study (CHAPS) as well as a high-resolution simulation that does not include parameterized convection. The simulation results are used to investigate the impact of cloud-aerosol interactions on the regional scale transport of black carbon (BC), organic aerosol (OA), and sulfate aerosol. Based on the simulations presented here, changes in the column integrated BC can be as large as -50% when cloud-aerosol interactions are considered (due largely to wet removal), or as large as +35% for sulfate in non-precipitating conditions due to the sulfate production in the parameterized clouds. The modifications to WRF-Chem version 3.2.1 are found to account for changes in the cloud drop number concentration (CDNC) and changes in the chemical composition of cloud-drop residuals in a way that is consistent with observations collected during CHAPS. Efforts are currently underway to port the changes described here to WRF-Chem version 3.5, and it is anticipated that they

Variations of the Electron Fluxes in the Terrestrial Radiation Belts Due To the Impact of Corotating Interaction Regions and Interplanetary Coronal Mass Ejections

Science.gov (United States)

Benacquista, R.; Boscher, D.; Rochel, S.; Maget, V.

2018-02-01

In this paper, we study the variations of the radiation belts electron fluxes induced by the interaction of two types of solar wind structures with the Earth magnetosphere: the corotating interaction regions and the interplanetary coronal mass ejections. We use a statistical method based on the comparison of the preevent and postevent fluxes. Applied to the National Oceanic and Atmospheric Administration-Polar Operational Environmental Satellites data, this gives us the opportunity to extend previous studies focused on relativistic electrons at geosynchronous orbit. We enlighten how corotating interaction regions and Interplanetary Coronal Mass Ejections can impact differently the electron belts depending on the energy and the L shell. In addition, we provide a new insight concerning these variations by considering their amplitude. Finally, we show strong relations between the intensity of the magnetic storms related to the events and the variation of the flux. These relations concern both the capacity of the events to increase the flux and the deepness of these increases.

Effects of air-sea interaction on extended-range prediction of geopotential height at 500 hPa over the northern extratropical region

Science.gov (United States)

Wang, Xujia; Zheng, Zhihai; Feng, Guolin

2018-04-01

The contribution of air-sea interaction on the extended-range prediction of geopotential height at 500 hPa in the northern extratropical region has been analyzed with a coupled model form Beijing Climate Center and its atmospheric components. Under the assumption of the perfect model, the extended-range prediction skill was evaluated by anomaly correlation coefficient (ACC), root mean square error (RMSE), and signal-to-noise ratio (SNR). The coupled model has a better prediction skill than its atmospheric model, especially, the air-sea interaction in July made a greater contribution for the improvement of prediction skill than other months. The prediction skill of the extratropical region in the coupled model reaches 16-18 days in all months, while the atmospheric model reaches 10-11 days in January, April, and July and only 7-8 days in October, indicating that the air-sea interaction can extend the prediction skill of the atmospheric model by about 1 week. The errors of both the coupled model and the atmospheric model reach saturation in about 20 days, suggesting that the predictable range is less than 3 weeks.

Early life adversity and serotonin transporter gene variation interact to affect DNA methylation of the corticotropin-releasing factor gene promoter region in the adult rat brain

NARCIS (Netherlands)

Doelen, R.H.A. van der; Arnoldussen, I.A.C.; Ghareh, H.; Och, L. van; Homberg, J.R.; Kozicz, L.T.

2015-01-01

The interaction between childhood maltreatment and the serotonin transporter (5-HTT) gene linked polymorphic region has been associated with increased risk to develop major depression. This Gene x Environment interaction has furthermore been linked with increased levels of anxiety and glucocorticoid

Interactive Development of Regional Climate Web Pages for the Western United States

Science.gov (United States)

Oakley, N.; Redmond, K. T.

2013-12-01

Weather and climate have a pervasive and significant influence on the western United States, driving a demand for information that is ongoing and constantly increasing. In communications with stakeholders, policy makers, researchers, educators, and the public through formal and informal encounters, three standout challenges face users of weather and climate information in the West. First, the needed information is scattered about the web making it difficult or tedious to access. Second, information is too complex or requires too much background knowledge to be immediately applicable. Third, due to complex terrain, there is high spatial variability in weather, climate, and their associated impacts in the West, warranting information outlets with a region-specific focus. Two web sites, TahoeClim and the Great Basin Weather and Climate Dashboard were developed to overcome these challenges to meeting regional weather and climate information needs. TahoeClim focuses on the Lake Tahoe Basin, a region of critical environmental concern spanning the border of Nevada and California. TahoeClim arose out of the need for researchers, policy makers, and environmental organizations to have access to all available weather and climate information in one place. Additionally, TahoeClim developed tools to both interpret and visualize data for the Tahoe Basin with supporting instructional material. The Great Basin Weather and Climate Dashboard arose from discussions at an informal meeting about Nevada drought organized by the USDA Farm Service Agency. Stakeholders at this meeting expressed a need to take a 'quick glance' at various climate indicators to support their decision making process. Both sites were designed to provide 'one-stop shopping' for weather and climate information in their respective regions and to be intuitive and usable by a diverse audience. An interactive, 'co-development' approach was taken with sites to ensure needs of potential users were met. The sites were

Energetic electron precipitation in weak to moderate corotating interaction region-driven storms

Science.gov (United States)

Ødegaard, Linn-Kristine Glesnes; Tyssøy, Hilde Nesse; Søraas, Finn; Stadsnes, Johan; Sandanger, Marit Irene

2017-03-01

High-energy electron precipitation from the radiation belts can penetrate deep into the mesosphere and increase the production rate of NOx and HOx, which in turn will reduce ozone in catalytic processes. The mechanisms for acceleration and loss of electrons in the radiation belts are not fully understood, and most of the measurements of the precipitating flux into the atmosphere have been insufficient for estimating the loss cone flux. In the present study the electron flux measured by the NOAA POES Medium Energy Proton and Electron Detectors 0° and 90° detectors is combined together with theory of pitch angle diffusion by wave-particle interaction to quantify the electron flux lost below 120 km altitude. Using this method, 41 weak and moderate geomagnetic storms caused by corotating interaction regions during 2006-2010 are studied. The dependence of the energetic electron precipitation fluxes upon solar wind parameters and geomagnetic indices is investigated. Nine storms give increased precipitation of >˜750 keV electrons. Nineteen storms increase the precipitation of >˜300 keV electrons, but not the >˜750 keV population. Thirteen storms either do not change or deplete the fluxes at those energies. Storms that have an increase in the flux of electrons with energy >˜300 keV are characterized by an elevated solar wind velocity for a longer period compared to the storms that do not. Storms with increased precipitation of >˜750 keV flux are distinguished by higher-energy input from the solar wind quantified by the ɛ parameter and corresponding higher geomagnetic activity.

A general method, a la Transport, for evaluation of the perturbing effects of solenoidal inserts in storage ring interaction regions

International Nuclear Information System (INIS)

Murray, J.J.

1976-07-01

It may be expected that solenoid magnets will be used in many storage ring experiments. Typically an insert would consist of a main solenoid at the interaction point with a symmetrical pair of compensating solenoids located somewhere between the main solenoid and the ends of the interaction region. The magnetic fields of such an insert may significantly affect storage ring performance. We suggest here a simple, systematic method for evaluation of the effects, which together with adequate design supervision and field measurements will help to prevent any serious operational problems that might result if significant perturbations went unnoticed. 5 refs

On plasma-neutral gas interaction

International Nuclear Information System (INIS)

Venkataramani, N.; Mattoo, S.K.

1980-01-01

The importance of plasma-neutral gas interaction layer has been emphasized by pointing out its application to a wide variety of physical phenomena. The interaction of a magnetised plasma stream penetrating a neutral gas cloud is discussed in the light of Alfven's critical velocity and Varma's threshold velocity on the ionising interaction. Interaction of a moving magnetised plasma with a stationary neutral gas has been studied and described. The device comprises of a plasma gun and an interaction region where neutral gas cloud is injected. The interaction region is provided with a transverse magnetic field of upto 1000 G. Several diagnostics deployed at the interaction region to make measurements on the macroscopic parameters of plasma and neutral gas are described. The parameters of discharge circuits are measured with high current and voltage probes. An interaction between a magnetised plasma stream and a neutral gas cloud is demonstrated. It is shown that this interaction does not have Varma's threshold on their relative velocity. The Alfven's critical velocity phenomenon is shown to depend on the integrated column neutral gas density that a plasma stream encounters while penetrating through it and not on the neutral gas density in the range of 10 17 -10 21 m -3 . (auth.)

Regional manpower planning

OpenAIRE

G. Erens; P. Salamink; C.A. Van der Merwe CA

2003-01-01

Particular problems come to the fore when planning development at the regional level. These range from the complexities of the multifarious interactions between the sect oral and local components of the region to the necessity of achieving extensive participation of regional stakeholders in the planning process. In this paper a methodology for regional manpower planning is proposed. The methodology is designed to accommodate the full range of problems by applying a systems approach which is b...

Simulation of the Regional Ground-Water-Flow System and Ground-Water/Surface-Water Interaction in the Rock River Basin, Wisconsin

Science.gov (United States)

Juckem, Paul F.

2009-01-01

A regional, two-dimensional, areal ground-water-flow model was developed to simulate the ground-water-flow system and ground-water/surface-water interaction in the Rock River Basin. The model was developed by the U.S. Geological Survey (USGS), in cooperation with the Rock River Coalition. The objectives of the regional model were to improve understanding of the ground-water-flow system and to develop a tool suitable for evaluating the effects of potential regional water-management programs. The computer code GFLOW was used because of the ease with which the model can simulate ground-water/surface-water interactions, provide a framework for simulating regional ground-water-flow systems, and be refined in a stepwise fashion to incorporate new data and simulate ground-water-flow patterns at multiple scales. The ground-water-flow model described in this report simulates the major hydrogeologic features of the modeled area, including bedrock and surficial aquifers, ground-water/surface-water interactions, and ground-water withdrawals from high-capacity wells. The steady-state model treats the ground-water-flow system as a single layer with hydraulic conductivity and base elevation zones that reflect the distribution of lithologic groups above the Precambrian bedrock and a regionally significant confining unit, the Maquoketa Formation. In the eastern part of the Basin where the shale-rich Maquoketa Formation is present, deep ground-water flow in the sandstone aquifer below the Maquoketa Formation was not simulated directly, but flow into this aquifer was incorporated into the GFLOW model from previous work in southeastern Wisconsin. Recharge was constrained primarily by stream base-flow estimates and was applied uniformly within zones guided by regional infiltration estimates for soils. The model includes average ground-water withdrawals from 1997 to 2006 for municipal wells and from 1997 to 2005 for high-capacity irrigation, industrial, and commercial wells. In addition

High resolution modelling of aerosol dispersion regimes during the CAPITOUL field experiment: from regional to local scale interactions

Directory of Open Access Journals (Sweden)

B. Aouizerats

2011-08-01

Full Text Available High resolution simulation of complex aerosol particle evolution and gaseous chemistry over an atmospheric urban area is of great interest for understanding air quality and processes. In this context, the CAPITOUL (Canopy and Aerosol Particle Interactions in the Toulouse Urban Layer field experiment aims at a better understanding of the interactions between the urban dynamics and the aerosol plumes. During a two-day Intensive Observational Period, a numerical model experiment was set up to reproduce the spatial distribution of specific particle pollutants, from the regional scales and the interactions between different cities, to the local scales with specific turbulent structures. Observations show that local dynamics depends on the day-regime, and may lead to different mesoscale dynamical structures. This study focuses on reproducing these fine scale dynamical structures, and investigate the impact on the aerosol plume dispersion. The 500-m resolution simulation manages to reproduce convective rolls at local scale, which concentrate most of the aerosol particles and can locally affect the pollutant dispersion and air quality.

Low-frequency magnetic field fluctuations in Venus' solar wind interaction region: Venus Express observations

Directory of Open Access Journals (Sweden)

L. Guicking

2010-04-01

Full Text Available We investigate wave properties of low-frequency magnetic field fluctuations in Venus' solar wind interaction region based on the measurements made on board the Venus Express spacecraft. The orbit geometry is very suitable to investigate the fluctuations in Venus' low-altitude magnetosheath and mid-magnetotail and provides an opportunity for a comparative study of low-frequency waves at Venus and Mars. The spatial distributions of the wave properties, in particular in the dayside and nightside magnetosheath as well as in the tail and mantle region, are similar to observations at Mars. As both planets do not have a global magnetic field, the interaction process of the solar wind with both planets is similar and leads to similar instabilities and wave structures. We focus on the spatial distribution of the wave intensity of the fluctuating magnetic field and detect an enhancement of the intensity in the dayside magnetosheath and a strong decrease towards the terminator. For a detailed investigation of the intensity distribution we adopt an analytical streamline model to describe the plasma flow around Venus. This allows displaying the evolution of the intensity along different streamlines. It is assumed that the waves are generated in the vicinity of the bow shock and are convected downstream with the turbulent magnetosheath flow. However, neither the different Mach numbers upstream and downstream of the bow shock, nor the variation of the cross sectional area and the flow velocity along the streamlines play probably an important role in order to explain the observed concentration of wave intensity in the dayside magnetosheath and the decay towards the nightside magnetosheath. But, the concept of freely evolving or decaying turbulence is in good qualitative agreement with the observations, as we observe a power law decay of the intensity along the streamlines. The observations support the assumption of wave convection through the magnetosheath, but

Water-rock-tailings interactions and sources of sulfur and metals in the subtropical mining region of Taxco, Guerrero (southern Mexico): A multi-isotopic approach

International Nuclear Information System (INIS)

Talavera Mendoza, Oscar; Ruiz, Joaquin; Díaz Villaseñor, Elvia; Ramírez Guzmán, Alejandro; Cortés, Alejandra; Salgado Souto, Sergio Adrián; Dótor Almazán, Azucena; Rivera Bustos, Reymundo

2016-01-01

Multi-isotope (H, O, S, Sr, Pb) systems coupled with conventional (major and trace element) hydrogeochemical analysis were applied to determine the origin of water, to model water-rock-tailings interactions and for source apportionment of sulfur and associated toxic metals in the mining region of Taxco, Guerrero in southern Mexico. Oxygen and H isotopes indicate that meteoric water in the zone is rainwater undergoing varying degrees of isotopic fractionation by atmospheric evaporation whereas Sr isotopes trace the interaction of pristine water from volcanics of the regional recharge zone and subsequently flowing through sandstone and shale to spring points. Leachates form from two distinctive sources (spring water and surface water) having differential interactions with bedrocks prior to entering the tailings. Compared to pristine water, leachates are enriched in sulfate, metals (e.g. Fe, Mn, Pb and Zn) and metalloids (e.g. As). The sulfur isotopic composition of ore-sulfides, leachates, secondary precipitates, regional surface water and hypogenic sulfates is described in terms of a two-component mixing model with shale of Mexcala and limestone of Morelos formations representing the light and heavy end-members, respectively, whereas Sr isotopic composition is bracketed combining three lithogenic (Mexcala/Morelos, Tilzapotla and Taxco Schist) sources. Finally, leachates have a mixture of lead from ore-sulfides and Taxco Schist Formation (Family I) or from ore-sulfides alone (Family II). The application of multiple environmental isotopic techniques is an outstanding tool for elucidating complex interactions of water with bedrocks and tailings and for determining the source of sulfur and toxic metal from mining and other metal polluted environments. - Highlights: • We applied multi-isotope techniques to model water-bedrocks-tailings interaction. • Spring water records fractionation by evaporation and interaction with local rocks. • The sulfur cycle is modeled in

Markovian negentropies in bioinformatics. 1. A picture of footprints after the interaction of the HIV-1 Psi-RNA packaging region with drugs.

Science.gov (United States)

Díaz, Humberto González; de Armas, Ronal Ramos; Molina, Reinaldo

2003-11-01

Many experts worldwide have highlighted the potential of RNA molecules as drug targets for the chemotherapeutic treatment of a range of diseases. In particular, the molecular pockets of RNA in the HIV-1 packaging region have been postulated as promising sites for antiviral action. The discovery of simpler methods to accurately represent drug-RNA interactions could therefore become an interesting and rapid way to generate models that are complementary to docking-based systems. The entropies of a vibrational Markov chain have been introduced here as physically meaningful descriptors for the local drug-nucleic acid complexes. A study of the interaction of the antibiotic Paromomycin with the packaging region of the RNA present in type-1 HIV has been carried out as an illustrative example of this approach. A linear discriminant function gave rise to excellent discrimination among 80.13% of interacting/non-interacting sites. More specifically, the model classified 36/45 nucleotides (80.0%) that interacted with paromomycin and, in addition, 85/106 (80.2%) footprinted (non-interacting) sites from the RNA viral sequence were recognized. The model showed a high Matthews' regression coefficient (C = 0.64). The Jackknife method was also used to assess the stability and predictability of the model by leaving out adenines, C, G, or U. Matthews' coefficients and overall accuracies for these approaches were between 0.55 and 0.68 and 75.8 and 82.7, respectively. On the other hand, a linear regression model predicted the local binding affinity constants between a specific nucleotide and the aforementioned antibiotic (R2 = 0.83,Q2 = 0.825). These kinds of models may play an important role either in the discovery of new anti-HIV compounds or in the elucidation of their mode of action. On request from the corresponding author (humbertogd@cbq.uclv.edu.cu or humbertogd@navegalia.com).

Influence of mechanical vibrations on the field quality measurements of LHC interaction region quadrupole magnets

CERN Document Server

Di Marco, J; Schlabach, P; Sylvester, C D; Tompkins, J C; Krzywinski, J

2000-01-01

The high gradient quadrupole magnets being developed by the US-LHC Accelerator Project for the LHC Interaction Regions have stringent field quality requirements. The field quality of these magnets will be measured using a rotating coil system presently under development. Mechanical vibrations of the coil during field quality measurements are of concern because such vibrations can introduce systematic errors in measurement results. This paper presents calculations of the expected influence of vibrations on field quality measurements and a technique to measure vibrations present in data acquired with standard "tangential-style" probes. Measured vibrations are reported and compared to simulations. Limits on systematic errors in multipole measurements are discussed along with implications for probe and measurement system design. (3 refs).

Assessing the impact of aerosol-atmosphere interactions in convection-permitting regional climate simulations: the Rolf medicane in 2011

Science.gov (United States)

José Gómez-Navarro, Juan; María López-Romero, José; Palacios-Peña, Laura; Montávez, Juan Pedro; Jiménez-Guerrero, Pedro

2017-04-01

A critical challenge for assessing regional climate change projections relies on improving the estimate of atmospheric aerosol impact on clouds and reducing the uncertainty associated with the use of parameterizations. In this sense, the horizontal grid spacing implemented in state-of-the-art regional climate simulations is typically 10-25 kilometers, meaning that very important processes such as convective precipitation are smaller than a grid box, and therefore need to be parameterized. This causes large uncertainties, as closure assumptions and a number of parameters have to be established by model tuning. Convection is a physical process that may be strongly conditioned by atmospheric aerosols, although the solution of aerosol-cloud interactions in warm convective clouds remains nowadays a very important scientific challenge, rendering parametrization of these complex processes an important bottleneck that is responsible from a great part of the uncertainty in current climate change projections. Therefore, the explicit simulation of convective processes might improve the quality and reliability of the simulations of the aerosol-cloud interactions in a wide range of atmospheric phenomena. Particularly over the Mediterranean, the role of aerosol particles is very important, being this a crossroad that fuels the mixing of particles from different sources (sea-salt, biomass burning, anthropogenic, Saharan dust, etc). Still, the role of aerosols in extreme events in this area such as medicanes has been barely addressed. This work aims at assessing the role of aerosol-atmosphere interaction in medicanes with the help of the regional chemistry/climate on-line coupled model WRF-CHEM run at a convection-permitting resolution. The analysis is exemplary based on the "Rolf" medicane (6-8 November 2011). Using this case study as reference, four sets of simulations are run with two spatial resolutions: one at a convection-permitting configuration of 4 km, and other at the

Interactions among resonances in the unresolved region

International Nuclear Information System (INIS)

Queiroz Bogado Leite, S. de.

1982-11-01

The theory on resonance absorption in the unresolved region is reviewed and a subroutine is presented, optional to UNRES in MC 2 code. Comparisons with the isolated resonance model suggest the necessity, in some cases, of considering interference and overlapping effects among resonances of the system. (Author) [pt

Estimating the Local Size and Coverage of Interaction Network Regions

Science.gov (United States)

Eagle, Michael; Barnes, Tiffany

2015-01-01

Interactive problem solving environments, such as intelligent tutoring systems and educational video games, produce large amounts of transactional data which make it a challenge for both researchers and educators to understand how students work within the environment. Researchers have modeled the student-tutor interactions using complex network…

Interactive 3D computer model of the human corneolimbal region

DEFF Research Database (Denmark)

Molvaer, Rikke K; Andreasen, Arne; Heegaard, Steffen

2013-01-01

in the limbal region: limbal epithelial crypts (LECs), limbal crypts (LCs) and focal stromal projections (FSPs). In all, eight LECs, 25 LCs and 105 FSPs were identified in the limbal region. The LECs, LCs and FSPs were predominantly located in the superior limbal region with seven LECs, 19 LCs and 93 FSPs...

Cryosphere-hydrosphere interactions: numerical modeling using the Regional Ocean Modeling System (ROMS) at different scales

Science.gov (United States)

Bergamasco, A.; Budgell, W. P.; Carniel, S.; Sclavo, M.

2005-03-01

Conveyor belt circulation controls global climate through heat and water fluxes with atmosphere and from tropical to polar regions and vice versa. This circulation, commonly referred to as thermohaline circulation (THC), seems to have millennium time scale and nowadays--a non-glacial period--appears to be as rather stable. However, concern is raised by the buildup of CO2 and other greenhouse gases in the atmosphere (IPCC, Third assessment report: Climate Change 2001. A contribution of working group I, II and III to the Third Assessment Report of the Intergovernmental Panel on Climate Change (Cambridge Univ. Press, UK) 2001, http://www.ipcc.ch) as these may affect the THC conveyor paths. Since it is widely recognized that dense-water formation sites act as primary sources in strengthening quasi-stable THC paths (Stommel H., Tellus131961224), in order to simulate properly the consequences of such scenarios a better understanding of these oceanic processes is needed. To successfully model these processes, air-sea-ice-integrated modelling approaches are often required. Here we focus on two polar regions using the Regional Ocean Modeling System (ROMS). In the first region investigated, the North Atlantic-Arctic, where open-ocean deep convection and open-sea ice formation and dispersion under the intense air-sea interactions are the major engines, we use a new version of the coupled hydrodynamic-ice ROMS model. The second area belongs to the Antarctica region inside the Southern Ocean, where brine rejections during ice formation inside shelf seas origin dense water that, flowing along the continental slope, overflow becoming eventually abyssal waters. Results show how nowadays integrated-modelling tasks have become more and more feasible and effective; numerical simulations dealing with large computational domains or challenging different climate scenarios can be run on multi-processors platforms and on systems like LINUX clusters, made of the same hardware as PCs, and

Cryosphere-hydrosphere interactions: Numerical modeling using the Regional Ocean Modeling System (ROMS) at different scales

International Nuclear Information System (INIS)

Bergamasco, A.; Carniel, S.; Sclavo, M.; Budgell, W.P.

2005-01-01

Conveyor belt circulation controls global climate through heat and water fluxes with atmosphere and from tropical to polar regions and vice versa. This circulation, commonly referred to as thermohaline circulation (THC), seems to have millennium time scale and nowadays-a non-glacial period-appears to be as rather stable. However, concern is raised by the buildup of CO 2 and other greenhouse gases in the atmosphere (IPCC, Third assessment report: Climate Change 2001. A contribution 01 working group I, n and In to the Third Assessment Report of the intergovernmental Panel on Climate Change (Cambridge Univ. Press, UK) 2001, http://www.ipcc.ch) as these may affect the THC conveyor paths. Since it is widely recognized that dense water formation sites ad as primary sources in strengthening quasi-stable THC paths (Stommel H., Tellus, 13 (1961) 224), in order to simulate properly the consequences of such scenarios a better understanding of these oceanic processes is needed. To successfully model these processes, air sea-ice-integrated modelling approaches are often required. Here we focus on two polar regions using the Regional Ocean Modeling System (ROMS). In the first region investigated, the North Atlantic-Arctic, where open-ocean Jeep convection and open-sea ire formation and dispersion under the intense air-sea interactions are the major engines, we use a new version of the coupled hydrodynamic-ice ROMS model. The second area belongs to the Antarctica region inside the Southern Ocean, where brine rejections during ice formation inside shelf seas origin dense water that, flowing along the continental slope, overflow becoming eventually abyssal waters. Results show how nowadays integrated-modelling tasks have become more and more feasible and effective; numerical simulations dealing with large computational domains or challenging different climate scenarios can be run on multi-processors platforms and on systems like LINUX clusters, made of the same hardware as PCs, and

Energy transitions in small-scale regions – What we can learn from a regional innovation systems perspective

International Nuclear Information System (INIS)

Mattes, Jannika; Huber, Andreas; Koehrsen, Jens

2015-01-01

The prevalent theories in the debate on sustainability transitions have been criticised for not sufficiently addressing energy change processes at the local level. This paper aims to enhance our understanding of local energy reorganisation processes. Drawing on the Regional Innovation Systems (RIS) approach, we argue that local development dynamics result from the interaction of various subsystems: science, politics, public administration, industry, finance, intermediaries and civil society. The analysis of the involved subsystems and their interaction shows how energy transitions are shaped by different individual and organisational actors as well as institutions on the local level. Empirical evidence from case studies on the German cities of Emden and Bottrop illustrates our theoretical conceptualisation of energy transitions. We conclude by presenting characteristic interaction patterns for energy transition drawn from the two cases. - Highlights: • We highlight the importance of spatial and regional aspects for transitions. • We draw upon regional innovation systems’ subsystems to describe energy transitions. • We show how actors and institutions interact in and coordinate transition processes. • We present evidence from two small-scale regions in Germany: Emden and Bottrop

Interactions Between Atmospheric Aerosols and Marine Boundary Layer Clouds on Regional and Global Scales

Science.gov (United States)

Wang, Zhen

Airborne aerosols are crucial atmospheric constituents that are involved in global climate change and human life qualities. Understanding the nature and magnitude of aerosol-cloud-precipitation interactions is critical in model predictions for atmospheric radiation budget and the water cycle. The interactions depend on a variety of factors including aerosol physicochemical complexity, cloud types, meteorological and thermodynamic regimes and data processing techniques. This PhD work is an effort to quantify the relationships among aerosol, clouds, and precipitation on both global and regional scales by using satellite retrievals and aircraft measurements. The first study examines spatial distributions of conversion rate of cloud water to rainwater in warm maritime clouds over the globe by using NASA A-Train satellite data. This study compares the time scale of the onset of precipitation with different aerosol categories defined by values of aerosol optical depth, fine mode fraction, and Angstrom Exponent. The results indicate that conversion time scales are actually quite sensitive to lower tropospheric static stability (LTSS) and cloud liquid water path (LWP), in addition to aerosol type. Analysis shows that tropical Pacific Ocean is dominated by the highest average conversion rate while subtropical warm cloud regions (far northeastern Pacific Ocean, far southeastern Pacific Ocean, Western Africa coastal area) exhibit the opposite result. Conversion times are mostly shorter for lower LTSS regimes. When LTSS condition is fixed, higher conversion rates coincide with higher LWP and lower aerosol index categories. After a general global view of physical property quantifications, the rest of the presented PhD studies is focused on regional airborne observations, especially bulk cloud water chemistry and aerosol aqueous-phase reactions during the summertime off the California coast. Local air mass origins are categorized into three distinct types (ocean, ships, and land

Environmental changes and human work in the region of the Upper Paraná River floodplain: processes and interactions

Directory of Open Access Journals (Sweden)

EA. Tomanik

Full Text Available The environment and society constitute a complex of elements and interactions. Thus, an understanding of the processes in which the environment and psychosocial elements are involved may not be gained from knowledge of just one isolated variable. Based on such premises, the present paper, which summarizes the results of a series of studies, adopts work relationships as its main focus, but in addition, it has two complementary objectives. One is to present some analyses on the interaction between human actions and the environmental changes that have been taking place in the region of the Upper Paraná River floodplain and in its boundaries. A secondary aim is to show how those two factors have been changing people's working and living conditions and the identity configuration of some of the human groups that live at that site.

Surface-Atmosphere Moisture Interactions in the Frozen Ground Regions of Eurasia.

Science.gov (United States)

Ford, Trent W; Frauenfeld, Oliver W

2016-01-18

Climate models simulate an intensifying Arctic hydrologic cycle in response to climatic warming, however the role of surface-atmosphere interactions from degrading frozen ground is unclear in these projections. Using Modern-Era Retrospective Analysis for Research and Applications (MERRA) data in high-latitude Eurasia, we examine long-term variability in surface-atmosphere coupling as represented by the statistical relationship between surface evaporative fraction (EF) and afternoon precipitation. Changes in EF, precipitation, and their statistical association are then related to underlying permafrost type and snow cover. Results indicate significant positive trends in July EF in the Central Siberian Plateau, corresponding to significant increases in afternoon precipitation. The positive trends are only significant over continuous permafrost, with non-significant or negative EF and precipitation trends over isolated, sporadic, and discontinuous permafrost areas. Concurrently, increasing EF and subsequent precipitation are found to coincide with significant trends in May and June snowmelt, which potentially provides the moisture source for the observed enhanced latent heating and moisture recycling in the region. As climate change causes continuous permafrost to transition to discontinuous, discontinuous to sporadic, sporadic to isolated, and isolated permafrost disappears, this will also alter patterns of atmospheric convection, moisture recycling, and hence the hydrologic cycle in high-latitude land areas.

The importance of drought-pathogen interactions in driving oak mortality events in the Ozark Border Region

Science.gov (United States)

Wood, Jeffrey D.; Knapp, Benjamin O.; Muzika, Rose-Marie; Stambaugh, Michael C.; Gu, Lianhong

2018-01-01

Forests are expected to become more vulnerable to drought-induced tree mortality owing to rising temperatures and changing precipitation patterns that amplify drought lethality. There is a crucial knowledge gap regarding drought-pathogen interactions and their effects on tree mortality. The objectives of this research were to examine whether stand dynamics and ‘background’ mortality rates were affected by a severe drought in 2012; and to evaluate the importance of drought-pathogen interactions within the context of a mortality event that killed 10.0% and 26.5% of white (Quercus alba L.) and black (Q. velutina Lam.) oak stems, respectively, in a single year. We synthesized (i) forest inventory data (24 years), (ii) 11 years of ecosystem flux data with supporting biological data including predawn leaf water potential and annual forest inventories, (iii) tree-ring analyses of individual white oaks that were alive and ones that died in 2013, and (iv) documentation of a pathogen infection. This forest displayed stand dynamics consistent with expected patterns of decreasing tree density and increasing basal area. Continued basal area growth outpaced mortality implying a net accumulation of live biomass, which was supported by eddy covariance ecosystem carbon flux observations. Individual white and black oaks that died in 2013 displayed historically lower growth with the majority of dead trees exhibiting Biscogniauxia cankers. Our observations point to the importance of event-based oak mortality and that drought-Biscogniauxia interactions are important in shaping oak stand dynamics in this region. Although forest function has not been significantly impaired, these drought-pathogen interactions could amplify mortality under future climate conditions and thus warrant further investigation.

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry.

Science.gov (United States)

Liu, Shanshan; Wang, Feng; Xue, Kai; Sun, Bo; Zhang, Yuguang; He, Zhili; Van Nostrand, Joy D; Zhou, Jizhong; Yang, Yunfeng

2015-03-01

Soil transplant into warmer regions has been shown to alter soil microbiology. In contrast, little is known about the effects of soil transplant into colder regions, albeit that climate cooling has solicited attention in recent years. To address this question, we transplanted bare fallow soil over large transects from southern China (subtropical climate zone) to central (warm temperate climate zone) and northern China (cold temperate climate zone). After an adaptation period of 4 years, soil nitrogen components, microbial biomass and community structures were altered. However, the effects of soil transplant on microbial communities were dampened by maize cropping, unveiling a negative interaction between cropping and transplant. Further statistical analyses with Canonical correspondence analysis and Mantel tests unveiled annual average temperature, relative humidity, aboveground biomass, soil pH and NH4 (+) -N content as environmental attributes closely correlated with microbial functional structures. In addition, average abundances of amoA-AOA (ammonia-oxidizing archaea) and amoA-AOB (ammonia-oxidizing bacteria) genes were significantly (P Microbiology and John Wiley & Sons Ltd.

A Spatially Explicit Dual-Isotope Approach to Map Regions of Plant-Plant Interaction after Exotic Plant Invasion.

Directory of Open Access Journals (Sweden)

Christine Hellmann

Full Text Available Understanding interactions between native and invasive plant species in field settings and quantifying the impact of invaders in heterogeneous native ecosystems requires resolving the spatial scale on which these processes take place. Therefore, functional tracers are needed that enable resolving the alterations induced by exotic plant invasion in contrast to natural variation in a spatially explicit way. 15N isoscapes, i.e., spatially referenced representations of stable nitrogen isotopic signatures, have recently provided such a tracer. However, different processes, e.g. water, nitrogen or carbon cycles, may be affected at different spatial scales. Thus multi-isotope studies, by using different functional tracers, can potentially return a more integrated picture of invader impact. This is particularly true when isoscapes are submitted to statistical methods suitable to find homogeneous subgroups in multivariate data such as cluster analysis. Here, we used model-based clustering of spatially explicit foliar δ15N and δ13C isoscapes together with N concentration of a native indicator species, Corema album, to map regions of influence in a Portuguese dune ecosystem invaded by the N2-fixing Acacia longifolia. Cluster analysis identified regions with pronounced alterations in N budget and water use efficiency in the native species, with a more than twofold increase in foliar N, and δ13C and δ15N enrichment of up to 2‰ and 8‰ closer to the invader, respectively. Furthermore, clusters of multiple functional tracers indicated a spatial shift from facilitation through N addition in the proximity of the invader to competition for resources other than N in close contact. Finding homogeneous subgroups in multi-isotope data by means of model-based cluster analysis provided an effective tool for detecting spatial structure in processes affecting plant physiology and performance. The proposed method can give an objective measure of the spatial extent

A special type of neutron-proton pairing interaction and the moments of inertia of some deformed even-even nuclei in the rare earth region

International Nuclear Information System (INIS)

Meftunoglu, E.; Gerceklioglu, M.; Erbil, H.H.; Kuliev, A.A.

1998-01-01

In this work, the effect of a special type of neutron-proton pairing interaction on the moments of inertia of some deformed nuclei in the rare earth region is investigated. First, making a perturbative approximation, we assume that the form of the equations of the BCS theory and usual Bogolyubov transformations are unchanged. Second, we use a phenomenological method for the strength of this neutron-proton pairing interaction introducing a parameter. Calculations show that this interaction is important for the ground-state moments of inertia and that it could be effectual in other nuclear phenomena. (author)

On Austrian regional economics

NARCIS (Netherlands)

Heijman, W.J.M.; Leen, A.R.

2004-01-01

The aim of this research note is two-fold, firstly, to clarify the growing interaction between regional science and Austrian economics and their awareness of each other. We elucidate the Austrian methodology, called praxeology, which is especially misunderstood in regional science. Secondly, we

Interactive effects of climate change with nutrients, mercury, and freshwater acidification on key taxa in the North Atlantic Landscape Conservation Cooperative region

Science.gov (United States)

Pinkney, Alfred E.; Driscoll, Charles T.; Evers, David C.; Hooper, Michael J.; Horan, Jeffrey; Jones, Jess W.; Lazarus, Rebecca S.; Marshall, Harold G.; Milliken, Andrew; Rattner, Barnett A.; Schmerfeld, John J.; Sparling, Donald W.

2015-01-01

The North Atlantic Landscape Conservation Cooperative LCC (NA LCC) is a public–private partnership that provides information to support conservation decisions that may be affected by global climate change (GCC) and other threats. The NA LCC region extends from southeast Virginia to the Canadian Maritime Provinces. Within this region, the US National Climate Assessment documented increases in air temperature, total precipitation, frequency of heavy precipitation events, and rising sea level, and predicted more drastic changes. Here, we synthesize literature on the effects of GCC interacting with selected contaminant, nutrient, and environmental processes to adversely affect natural resources within this region. Using a case study approach, we focused on 3 stressors with sufficient NA LCC region-specific information for an informed discussion. We describe GCC interactions with a contaminant (Hg) and 2 complex environmental phenomena—freshwater acidification and eutrophication. We also prepared taxa case studies on GCC- and GCC-contaminant/nutrient/process effects on amphibians and freshwater mussels. Several avian species of high conservation concern have blood Hg concentrations that have been associated with reduced nesting success. Freshwater acidification has adversely affected terrestrial and aquatic ecosystems in the Adirondacks and other areas of the region that are slowly recovering due to decreased emissions of N and sulfur oxides. Eutrophication in many estuaries within the region is projected to increase from greater storm runoff and less denitrification in riparian wetlands. Estuarine hypoxia may be exacerbated by increased stratification. Elevated water temperature favors algal species that produce harmful algal blooms (HABs). In several of the region's estuaries, HABs have been associated with bird die-offs. In the NA LCC region, amphibian populations appear to be declining. Some species may be adversely affected by GCC through higher temperatures

The C-terminal region (640-967) of Arabidopsis CPL1 interacts with the abiotic stress- and ABA-responsive transcription factors

International Nuclear Information System (INIS)

Bang, Woo Young; Kim, Se Won; Jeong, In Sil; Koiwa, Hisashi; Bahk, Jeong Dong

2008-01-01

Proteins in CPL1 family are unique to plants and contain a phosphatase catalytic domain and double-stranded RNA (dsRNA)-binding motifs (DRMs) in a single peptide. Though DRMs are important for the function of Arabidopsis CPL1 in vivo, the role of CPL1 DRM has been obscure. We have isolated two transcription factors, ANAC019 (At1g52890) and AtMYB3 (At1g22640), which specifically interact with the C-terminal region (640-967) of AtCPL1 containing two DRMs. Detailed interaction analysis indicated that AtMYB3 specifically interacted with the first DRM but not with the second DRM in CPL1 C-terminal fragment. GFP-fusion analysis indicated that AtMYB3 localized in nuclei-like CPL1, and its expression is induced by abiotic stress and ABA treatment. These results suggest that AtMYB3 function in abiotic stress signaling in concert with CPL1

Study of Λ-production in target fragmentation region from rhorho interactions at 360 GeV/c in the triple regge framework

International Nuclear Information System (INIS)

Aziz, T.; Banerjee, S.; Ganguli, S.N.; Malhotra, P.K.; Raghavan, R.; Bailly, J.L.; Herquet, P.; Bruyant, F.; Caso, C.; Hrubec, J.; Marin, J.C.; Montanet, L.; Chiba, Y.; Epp, B.; Girtler, P.; Fontanelli, F.; Squarcia, S.; Trevisan, U.; Gemesy, T.; Pinter, G.; Matsumoto, S.; Mittra, I.S.; Singh, J.B.; Takahashi, K.; Tikhonova, L.A.

1985-01-01

A study of Λ production has been made in the target fragmentation region from pp interactions at 360 GeV/c. The triple Regge analysis of the double differential distribution d 2 N/d(M 2 /s)dt led to an estimate of the kaon trajectory intercept as approx.=-0.6. Comparison of the double and single inclusive distributions supports the idea of Pomeron factorization. The charged multiplicities and moments from virtual 'K + 'p interactions have been studied as a function of M, the c.m. energy of the virtual 'K + 'p system. The results agree reasonably well with the on shell K + p data. (orig.)

Multi-Hazard Interactions in Guatemala

Science.gov (United States)

Gill, Joel; Malamud, Bruce D.

2017-04-01

In this paper, we combine physical and social science approaches to develop a multi-scale regional framework for natural hazard interactions in Guatemala. The identification and characterisation of natural hazard interactions is an important input for comprehensive multi-hazard approaches to disaster risk reduction at a regional level. We use five transdisciplinary evidence sources to organise and populate our framework: (i) internationally-accessible literature; (ii) civil protection bulletins; (iii) field observations; (iv) stakeholder interviews (hazard and civil protection professionals); and (v) stakeholder workshop results. These five evidence sources are synthesised to determine an appropriate natural hazard classification scheme for Guatemala (6 hazard groups, 19 hazard types, and 37 hazard sub-types). For a national spatial extent (Guatemala), we construct and populate a "21×21" hazard interaction matrix, identifying 49 possible interactions between 21 hazard types. For a sub-national spatial extent (Southern Highlands, Guatemala), we construct and populate a "33×33" hazard interaction matrix, identifying 112 possible interactions between 33 hazard sub-types. Evidence sources are also used to constrain anthropogenic processes that could trigger natural hazards in Guatemala, and characterise possible networks of natural hazard interactions (cascades). The outcomes of this approach are among the most comprehensive interaction frameworks for national and sub-national spatial scales in the published literature. These can be used to support disaster risk reduction and civil protection professionals in better understanding natural hazards and potential disasters at a regional scale.

The Effects of Dietary Fat and Iron Interaction on Brain Regional Iron Contents and Stereotypical Behaviors in Male C57BL/6J Mice

Directory of Open Access Journals (Sweden)

Lumei Liu

2016-07-01

Full Text Available Adequate brain iron levels are essential for enzyme activities, myelination, and neurotransmitter synthesis in the brain. Although systemic iron deficiency has been found in genetically or dietary-induced obese subjects, the effects of obesity-associated iron dysregulation in brain regions have not been examined. The objective of this study was to examine the effect of dietary fat and iron interaction on brain regional iron contents and regional-associated behavior patterns in a mouse model. Thirty C57BL/6J male weanling mice were randomly assigned to six dietary treatment groups (n=5 with varying fat (control/high and iron (control/high/low contents. The stereotypical behaviors were measured during the 24th week. Blood, liver, and brain tissues were collected at the end of the 24th week. Brains were dissected into the hippocampus, midbrain, striatum, and thalamus regions. Iron contents and ferritin-H (FtH protein and mRNA expressions in these regions were measured. Correlations between stereotypical behaviors and brain regional iron contents were analyzed at the 5% significance level. Results showed that high-fat diet altered the stereotypical behaviors such as inactivity and total distance traveled (P<0.05. The high-fat diet altered brain iron contents and ferritin-H (FtH protein and mRNA expressions in a regional-specific manner: 1 high-fat diet significantly decreased the brain iron content in the striatum (P<0.05, but not other regions; and 2 thalamus has a more distinct change in FtH mRNA expression compared to other regions. Furthermore, high-fat diet resulted in a significant decreased total distance traveled and a significant correlation between iron content and sleeping in midbrain (P<0.05. Dietary iron also decreased brain iron content and FtH protein expression in a regionally specific manner. The effect of interaction between dietary fat and iron was observed in brain iron content and behaviors. All these findings will lay

Large-scale chromatin immunoprecipitation with promoter sequence microarray analysis of the interaction of the NSs protein of Rift Valley fever virus with regulatory DNA regions of the host genome.

Science.gov (United States)

Benferhat, Rima; Josse, Thibaut; Albaud, Benoit; Gentien, David; Mansuroglu, Zeyni; Marcato, Vasco; Souès, Sylvie; Le Bonniec, Bernard; Bouloy, Michèle; Bonnefoy, Eliette

2012-10-01

Rift Valley fever virus (RVFV) is a highly pathogenic Phlebovirus that infects humans and ruminants. Initially confined to Africa, RVFV has spread outside Africa and presently represents a high risk to other geographic regions. It is responsible for high fatality rates in sheep and cattle. In humans, RVFV can induce hepatitis, encephalitis, retinitis, or fatal hemorrhagic fever. The nonstructural NSs protein that is the major virulence factor is found in the nuclei of infected cells where it associates with cellular transcription factors and cofactors. In previous work, we have shown that NSs interacts with the promoter region of the beta interferon gene abnormally maintaining the promoter in a repressed state. In this work, we performed a genome-wide analysis of the interactions between NSs and the host genome using a genome-wide chromatin immunoprecipitation combined with promoter sequence microarray, the ChIP-on-chip technique. Several cellular promoter regions were identified as significantly interacting with NSs, and the establishment of NSs interactions with these regions was often found linked to deregulation of expression of the corresponding genes. Among annotated NSs-interacting genes were present not only genes regulating innate immunity and inflammation but also genes regulating cellular pathways that have not yet been identified as targeted by RVFV. Several of these pathways, such as cell adhesion, axonal guidance, development, and coagulation were closely related to RVFV-induced disorders. In particular, we show in this work that NSs targeted and modified the expression of genes coding for coagulation factors, demonstrating for the first time that this hemorrhagic virus impairs the host coagulation cascade at the transcriptional level.

Strong Ligand-Protein Interactions Derived from Diffuse Ligand Interactions with Loose Binding Sites.

Science.gov (United States)

Marsh, Lorraine

2015-01-01

Many systems in biology rely on binding of ligands to target proteins in a single high-affinity conformation with a favorable ΔG. Alternatively, interactions of ligands with protein regions that allow diffuse binding, distributed over multiple sites and conformations, can exhibit favorable ΔG because of their higher entropy. Diffuse binding may be biologically important for multidrug transporters and carrier proteins. A fine-grained computational method for numerical integration of total binding ΔG arising from diffuse regional interaction of a ligand in multiple conformations using a Markov Chain Monte Carlo (MCMC) approach is presented. This method yields a metric that quantifies the influence on overall ligand affinity of ligand binding to multiple, distinct sites within a protein binding region. This metric is essentially a measure of dispersion in equilibrium ligand binding and depends on both the number of potential sites of interaction and the distribution of their individual predicted affinities. Analysis of test cases indicates that, for some ligand/protein pairs involving transporters and carrier proteins, diffuse binding contributes greatly to total affinity, whereas in other cases the influence is modest. This approach may be useful for studying situations where "nonspecific" interactions contribute to biological function.

Cross-talk studies between FCC-hh Experimental Interaction Regions

CERN Document Server

AUTHOR|(CDS)2081283; Seryi, Andrei; Appleby, Robert Barrie; Rafique, Haroon; Besana, Maria Ilaria

2017-01-01

Debris from 50 TeV proton-proton collisions at the main interaction point in the FCC-hh may contribute to the background in the subsequent detector. This cross-talk is of possible concern for the FCC-hh due to the high luminosity and energy of the collider. DPMJET-III is used as a collision debris generator in order to assess the muon cross-talk contribution. An analytical calculation of muon range in rock is performed. This is followed by a full Monte Carlo simulation using FLUKA, where the accelerator tunnel has been modelled. The muon cross talk between the adjacent interaction points is assessed and its implications for FCC-hh design are discussed.

Field measurement of a Fermilab-built full scale prototype quadrupole magnet for the LHC interaction regions

CERN Document Server

Bossert, R; Di Marco, J; Fehér, S; Glass, H; Kerby, J S; Lamm, M J; Nobrega, A; Nicol, T H; Ogitsu, T; Orris, D; Page, T; Rabehl, Roger Jon; Sabbi, G L; Schlabach, P; Strait, J B; Sylvester, C D; Tartaglia, M; Tompkins, J C; Velev, G V; Zlobin, A V

2002-01-01

Superconducting low-beta quadrupole magnets for the interaction regions of the Large Hadron Collider have been developed by the US- LHC Accelerator Project. These 70 mm bore 5.5 m long quadrupoles are intended to operate in superfluid helium at 1.9 K with a nominal field gradient of 215 T/m. Following a series of 2 m long models, a full scale cryostated cold mass has been fabricated and cold tested at Fermilab. Magnetic field measurements of the prototype, including determination of the field axis using a single stretched wire, have been performed. These measurements and comparisons with results from the model magnets as well as field quality and alignment requirements are reported in this paper. (8 refs).

Insertion and crossing region design

International Nuclear Information System (INIS)

Wienands, U.; Beloshitsky, P.

2001-01-01

This article is the summary of the 5-afternoon tutorial on insertions for circular machines. Roughly half the course (Part 1) was spent discussing interaction regions, We start by recapitulating basic beam optics including building blocks. This provides the tools to analyze the basic structure of interaction regions and explore the parameter space. This simple example is then successively refined and made more realistic. Examples of realized interaction regions for both hadron and electron machines are shown and their salient features and differences explained. A brief discussion of solenoid-decoupling brings Part 1 to a close. In Part 2 we discussed various utility sections. Dispersion suppressors are presented in detail discussing the principles as well as the practical implementation of flexible suppressors using LEP as an example. Injection schemes, both single-turn and multi-turn stacking, are presented in depth. The matching of wiggler and undulator insertions and a discussion of the impact of these devices on beam parameters closes out Part 2

The C-terminal region of A-kinase anchor protein 350 (AKAP350A) enables formation of microtubule-nucleation centers and interacts with pericentriolar proteins.

Science.gov (United States)

Kolobova, Elena; Roland, Joseph T; Lapierre, Lynne A; Williams, Janice A; Mason, Twila A; Goldenring, James R

2017-12-15

Microtubules in animal cells assemble (nucleate) from both the centrosome and the cis-Golgi cisternae. A-kinase anchor protein 350 kDa (AKAP350A, also called AKAP450/CG-NAP/AKAP9) is a large scaffolding protein located at both the centrosome and Golgi apparatus. Previous findings have suggested that AKAP350 is important for microtubule dynamics at both locations, but how this scaffolding protein assembles microtubule nucleation machinery is unclear. Here, we found that overexpression of the C-terminal third of AKAP350A, enhanced GFP-AKAP350A(2691-3907), induces the formation of multiple microtubule-nucleation centers (MTNCs). Nevertheless, these induced MTNCs lacked "true" centriole proteins, such as Cep135. Mapping analysis with AKAP350A truncations demonstrated that AKAP350A contains discrete regions responsible for promoting or inhibiting the formation of multiple MTNCs. Moreover, GFP-AKAP350A(2691-3907) recruited several pericentriolar proteins to MTNCs, including γ-tubulin, pericentrin, Cep68, Cep170, and Cdk5RAP2. Proteomic analysis indicated that Cdk5RAP2 and Cep170 both interact with the microtubule nucleation-promoting region of AKAP350A, whereas Cep68 interacts with the distal C-terminal AKAP350A region. Yeast two-hybrid assays established a direct interaction of Cep170 with AKAP350A. Super-resolution and deconvolution microscopy analyses were performed to define the association of AKAP350A with centrosomes, and these studies disclosed that AKAP350A spans the bridge between centrioles, co-localizing with rootletin and Cep68 in the linker region. siRNA-mediated depletion of AKAP350A caused displacement of both Cep68 and Cep170 from the centrosome. These results suggest that AKAP350A acts as a scaffold for factors involved in microtubule nucleation at the centrosome and coordinates the assembly of protein complexes associating with the intercentriolar bridge.

A Study of the Resonance Interaction Effect between 238U and 239Pu in Lower Energy Region

International Nuclear Information System (INIS)

Haeggblom, H.

1968-12-01

An investigation has been made of the statistical frequency function for the distances between the 238 U and the 239 Pu resonances in the region 4-244 eV. It is concluded that the frequency function is probably constant but that the distances diverge appreciably from a constant function in the actual case, and that the divergence is such that the interaction effect on the resonance integral is smaller than would be expected from statistical considerations. This is also confirmed by calculations on the interaction effect. These have been performed using three different methods, namely: a) considering the actual positions and widths of the resonances, b) assuming a constant frequency function for the resonance. spacing and applying a theory developed by Rowlands and E A Fischer. c) applying a simplified, approximate method for calculations based on the statistical theory. The calculations are made for two temperatures and two values of the plutonium enrichment. It is shown that the average cross sections are considerably larger than the statistical calculations indicate

Interaction of Two Active Region Filaments Observed by NVST and SDO

Energy Technology Data Exchange (ETDEWEB)

Yang, Liheng; Yan, Xiaoli; Xue, Zhike; Xiang, Yongyuan [Yunnan Observatories, Chinese Academy of Sciences, Kunming 650216 (China); Li, Ting, E-mail: yangliheng@ynao.ac.cn [Key Laboratory of Solar Activity, National Astronomical Observatories, Chinese Academy of Sciences, Beijing 100012 (China)

2017-04-01

Using high spatial and temporal resolution H α data from the New Vacuum Solar Telescope (NVST) and simultaneous observations from the Solar Dynamics Observatory , we present the rare event of the interaction between two filaments (F1 and F2) in AR 11967 on 2014 January 31. The adjacent two filaments were almost perpendicular to each other. Their interaction was driven by the movement of F1 and started when the two filaments collided with each other. During the interaction, the threads of F1 continuously slipped from the northeast to the southwest, and were accompanied by the brightenings at the junction of two filaments and the northeast footpoint of F2. Part of F1 and the main body of F2 became invisible in H α wavelength due to the heating and the motion of F2. At the same time, bright material initiated from the junction of two filaments were observed to move along F1. The magnetic connectivities of F1 were found to be changed after their interaction. These observations suggest that magnetic reconnection was involved in the interaction of two filaments and resulted in the eruption of one filament.

Regional variation of flow duration curves in the eastern United States: Process-based analyses of the interaction between climate and landscape properties

Science.gov (United States)

Wafa Chouaib; Peter V. Caldwell; Younes Alila

2018-01-01

This paper advances the physical understanding of the flow duration curve (FDC) regional variation. It provides a process-based analysis of the interaction between climate and landscape properties to explain disparities in FDC shapes. We used (i) long term measured flow and precipitation data over 73 catchments from the eastern US. (ii) We calibrated the...

Study of neutron-proton interaction in the 300-700 MeV energy region: Progress report, July 1987-August 1988

International Nuclear Information System (INIS)

Northcliffe, L.C.

1988-08-01

The experimental program supported by the present grant is a continuation of the work supported under DOE Contract AS05-76ER04449. More detailed discussion of the experimental apparatus and earlier activities can be found in annual reports for that contract. The primary objective of the program the is investigation of the nucleon-nucleon (NN) interaction, in the medium-energy region, in both elastic and inelastic channels. This paper reviews experiments dealing with these types of high energy collisions. 41 refs

Regional Scale/Regional Climate Model Development and Its Applications at Goddard

Science.gov (United States)

Tao, W.-K.; Lau, W.; Qian, J.; Jia, Y.; Wetzel, P.; Chou, M.-D.; Wang, Y.; Lynn, B.

2000-01-01

A Regional Land-Atmosphere Climate Simulation System (RELACS) is being developed and implemented at NASA Goddard Space Flight Center. One of the major goals of RELACS is to use a regional scale model (Penn State/NCAR MM5) with improved physical processes and in particular land-related processes, to understand the role of the land surface and its interaction with convection and radiation as well as the water/energy cycles in the Indo-China/South China Sea (SCS)/China, N. America and S. America region.

Interaction mediated by the putative tip regions of MdsA and MdsC in the formation of a Salmonella-specific tripartite efflux pump.

Directory of Open Access Journals (Sweden)

Saemee Song

Full Text Available To survive in the presence of a wide range of toxic compounds, gram-negative bacteria expel such compounds via tripartite efflux pumps that span both the inner and outer membranes. The Salmonella-specific MdsAB pump consists of MdsB, a resistance-nodulation-division (RND-type inner membrane transporter (IMT that requires the membrane fusion protein (MFP MdsA, and an outer membrane protein (OMP; MdsC or TolC to form a tripartite efflux complex. In this study, we investigated the role of the putative tip regions of MdsA and its OMPs, MdsC and TolC, in the formation of a functional MdsAB-mediated efflux pump. Comparative analysis indicated that although sequence homologies of MdsA and MdsC with other MFPs and OMPs, respectively, are extremely low, key residues in the putative tip regions of these proteins are well conserved. Mutagenesis studies on these conserved sites demonstrated their importance for the physical and functional interactions required to form an MdsAB-mediated pump. Our studies suggest that, despite differences in the primary amino acid sequences and functions of various OMPs and MFPs, interactions mediated by the conserved tip regions of OMP and MFP are required for the formation of functional tripartite efflux pumps in gram-negative bacteria.

Interchannel interaction in orientation and alignment of Kr 4p4mp states in the region of 3d9np resonances

International Nuclear Information System (INIS)

Lagutin, B M; Petrov, I D; Sukhorukov, V L; Werner, L; Klumpp, S; Ehresmann, A; Schartner, K-H; Schmoranzer, H

2009-01-01

The interaction between intermediate channels which influence the population of Kr 4p 4 mp ionic states in the region of the 3d 9 np resonances by the photon-induced Auger decay was investigated. The most important influence on the investigated process stems from 4p 5 ε'l and 3d 9 ε'l channels.

REGIONAL FEATURES OF SPATIAL DEVELOPMENT OF THE INDUSTRIAL COMPLEX OF REGION IN CONDITIONS OF INSTABILITY

Directory of Open Access Journals (Sweden)

J.G. Lavrikova

2009-09-01

Full Text Available In clause the methodical approach to typology of spatial development of economy of the regions, considering position of region in national geoeconomic space, orientation to the global markets and character of interactions (network or integrated managing subjects in region is considered. Regional features of spatial development of regions of the Ural federal district are allocated. Directions of perfection of a level of the organization of spatial development of economy of regions in conditions of instability from positions of theories of unbalanced growth are offered.

Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval.

Science.gov (United States)

Rahman, Md Mahmudur; Antani, Sameer K; Demner-Fushman, Dina; Thoma, George R

2015-10-01

This article presents an approach to biomedical image retrieval by mapping image regions to local concepts where images are represented in a weighted entropy-based concept feature space. The term "concept" refers to perceptually distinguishable visual patches that are identified locally in image regions and can be mapped to a glossary of imaging terms. Further, the visual significance (e.g., visualness) of concepts is measured as the Shannon entropy of pixel values in image patches and is used to refine the feature vector. Moreover, the system can assist the user in interactively selecting a region-of-interest (ROI) and searching for similar image ROIs. Further, a spatial verification step is used as a postprocessing step to improve retrieval results based on location information. The hypothesis that such approaches would improve biomedical image retrieval is validated through experiments on two different data sets, which are collected from open access biomedical literature.

Parallel Beam-Beam Simulation Incorporating Multiple Bunches and Multiple Interaction Regions

CERN Document Server

Jones, F W; Pieloni, T

2007-01-01

The simulation code COMBI has been developed to enable the study of coherent beam-beam effects in the full collision scenario of the LHC, with multiple bunches interacting at multiple crossing points over many turns. The program structure and input are conceived in a general way which allows arbitrary numbers and placements of bunches and interaction points (IP's), together with procedural options for head-on and parasitic collisions (in the strong-strong sense), beam transport, statistics gathering, harmonic analysis, and periodic output of simulation data. The scale of this problem, once we go beyond the simplest case of a pair of bunches interacting once per turn, quickly escalates into the parallel computing arena, and herein we will describe the construction of an MPI-based version of COMBI able to utilize arbitrary numbers of processors to support efficient calculation of multi-bunch multi-IP interactions and transport. Implementing the parallel version did not require extensive disruption of the basic ...

Interactive Development-oriented Poverty Reduction Model for Bijie Experimental Region under the Guidance of Scientific Outlook on Development

Institute of Scientific and Technical Information of China (English)

Faliang; YU; Lisong; CHEN

2013-01-01

Bijie Experimental Region takes the ecological construction as the guarantee and takes population control as the key,to promote development-oriented poverty reduction and explore benign interaction between development-oriented poverty reduction and ecological construction and population control.Development-oriented poverty reduction model includes combination of raising crops and livestock,coordinated development of multiple wealth sources,transferring labor,and partner assistance;ecological construction model includes"Five sons passed imperial examinations",desertification control,agricultural circular economy,and project promotion;population control models includes human-land linkage,combination of favorable policies and propaganda and education,and combination of ambition arousing and education promotion.

COROTATING INTERACTION REGION ASSOCIATED SUPRATHERMAL HELIUM ION ENHANCEMENTS AT 1 AU: EVIDENCE FOR LOCAL ACCELERATION AT THE COMPRESSION REGION TRAILING EDGE

International Nuclear Information System (INIS)

Ebert, R. W.; Dayeh, M. A.; Desai, M. I.; Mason, G. M.

2012-01-01

We examined the temporal profiles and peak intensities for 73 corotating interaction region (CIR)-associated suprathermal (∼0.1-8 MeV nucleon –1 ) helium (He) ion enhancements identified at STEREO-A, STEREO-B, and/or Advanced Composition Explorer between 2007 and 2010. We found that in most events the peak He intensity times were well organized by the CIR compression region trailing edge, regardless of whether or not a reverse shock was present. Out of these events, 19% had their 0.193 MeV nucleon –1 He intensities peak within 1 hr and 50% within 4.75 hr of the CIR trailing edge, the distribution having a 1σ value of 7.3 hr. Events with a 0.193 MeV nucleon –1 He intensity peak time within 1σ of the CIR trailing edge showed a positive correlation between the ∼0.1 and 0.8 MeV nucleon –1 He peak intensities and magnetic compression ratios in events both with and without a reverse shock. The peak intensities in all other events showed little to moderate correlation between these parameters. Our results provide evidence that some fraction of the CIR-associated –1 He intensity enhancements observed at 1 AU are locally driven. We suggest an extended source for the CIR-associated energetic particles observed at 1 AU where the –1 ions are accelerated locally at or near the CIR trailing edge, the intensities being proportional to the local compression ratio strength, while the >MeV particles are likely accelerated at CIR-driven shocks beyond Earth orbit.

Classical region of a trapped Bose gas

Energy Technology Data Exchange (ETDEWEB)

Blakie, P Blair [Jack Dodd Centre for Photonics and Ultra-Cold Atoms, University of Otago, Dunedin (New Zealand); Davis, Matthew J [ARC Centre of Excellence for Quantum-Atom Optics, School of Physical Sciences, University of Queensland, Brisbane, QLD 4072 (Australia)

2007-06-14

The classical region of a Bose gas consists of all single particle modes that have a high average occupation and are well described by a classical field. Highly occupied modes only occur in massive Bose gases at ultra-cold temperatures, in contrast to the photon case where there are highly occupied modes at all temperatures. For the Bose gas the number of these modes is dependent on the temperature, the total number of particles and their interaction strength. In this paper, we characterize the classical region of a harmonically trapped Bose gas over a wide parameter regime. We use a Hartree-Fock approach to account for the effects of interactions, which we observe to significantly change the classical region as compared to the idealized case. We compare our results to full classical field calculations and show that the Hartree-Fock approach provides a qualitatively accurate description of a classical region for the interacting gas.

Mississippian subadults from the Middle Cumberland and Eastern regions of Tennessee: Biological indicators of population interaction.

Science.gov (United States)

Scopa Kelso, Rebecca

2018-02-23

Human subadult skeletal remains can provide a unique perspective into biosocial aspects of Mississippian period population interactions within and between the Middle Cumberland (MCR) and Eastern Tennessee Regions (ETR). The majority of previous studies have concentrated on adult skeletal remains, leaving out a large and extremely important population segment. Skeletal indicators of disease, growth, body proportions, and metabolic stress were collected from subadult remains from five archaeological sites over several temporal periods. Crucial to overcoming limitations associated with the osteological paradox, the biological results were placed into an archaeological context based on prior studies as well as paleoclimatological data. Results reveal homogeneity both within and between regions for most skeletal indicators. However, MCR individuals exhibit a higher frequency of pathology than those from ETC, while stature is significantly lower in younger subadults from the MCR. Within the ETR, there is no evidence for biological differences between Early Dallas and subsequent Late Dallas and Mouse Creek cultural phases. Despite presumed signs of increased conflict at the Dallas site, frequencies and types of skeletal pathology and growth disruptions are comparable to other regional sites. These findings suggest that despite cultural differences between the ETR and MCR, there was no large-scale intrusion from an outside population into the ETR during the Late Mississippian Period, or if one occurred, it is biologically invisible. Combined with climatic and archaeobotanical data, results suggest the MCR subadults were under increased stress in their earlier years. This may have been associated with increased interpersonal violence and dependence on few food sources occurring with greater scarcity. © 2018 Wiley Periodicals, Inc.

Functional, non-clonal IgMa-restricted B cell receptor interactions with the HIV-1 envelope gp41 membrane proximal external region.

Directory of Open Access Journals (Sweden)

Laurent Verkoczy

Full Text Available The membrane proximal external region (MPER of HIV-1 gp41 has several features that make it an attractive antibody-based vaccine target, but eliciting an effective gp41 MPER-specific protective antibody response remains elusive. One fundamental issue is whether the failure to make gp41 MPER-specific broadly neutralizing antibodies like 2F5 and 4E10 is due to structural constraints with the gp41 MPER, or alternatively, if gp41 MPER epitope-specific B cells are lost to immunological tolerance. An equally important question is how B cells interact with, and respond to, the gp41 MPER epitope, including whether they engage this epitope in a non-canonical manner i.e., by non-paratopic recognition via B cell receptors (BCR. To begin understanding how B cells engage the gp41 MPER, we characterized B cell-gp41 MPER interactions in BALB/c and C57BL/6 mice. Surprisingly, we found that a significant (approximately 7% fraction of splenic B cells from BALB/c, but not C57BL/6 mice, bound the gp41 MPER via their BCRs. This strain-specific binding was concentrated in IgM(hi subsets, including marginal zone and peritoneal B1 B cells, and correlated with enriched fractions (approximately 15% of gp41 MPER-specific IgM secreted by in vitro-activated splenic B cells. Analysis of Igh(a (BALB/c and Igh(b (C57BL/6 congenic mice demonstrated that gp41 MPER binding was controlled by determinants of the Igh(a locus. Mapping of MPER gp41 interactions with IgM(a identified MPER residues distinct from those to which mAb 2F5 binds and demonstrated the requirement of Fc C(H regions. Importantly, gp41 MPER ligation produced detectable BCR-proximal signaling events, suggesting that interactions between gp41 MPER and IgM(a determinants may elicit partial B cell activation. These data suggest that low avidity, non-paratopic interactions between the gp41 MPER and membrane Ig on naïve B cells may interfere with or divert bnAb responses.

Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility.

Science.gov (United States)

Pancera, Marie; Majeed, Shahzad; Ban, Yih-En Andrew; Chen, Lei; Huang, Chih-chin; Kong, Leopold; Kwon, Young Do; Stuckey, Jonathan; Zhou, Tongqing; Robinson, James E; Schief, William R; Sodroski, Joseph; Wyatt, Richard; Kwong, Peter D

2010-01-19

The viral spike of HIV-1 is composed of three gp120 envelope glycoproteins attached noncovalently to three gp41 transmembrane molecules. Viral entry is initiated by binding to the CD4 receptor on the cell surface, which induces large conformational changes in gp120. These changes not only provide a model for receptor-triggered entry, but affect spike sensitivity to drug- and antibody-mediated neutralization. Although some of the details of the CD4-induced conformational change have been visualized by crystal structures and cryoelectron tomograms, the critical gp41-interactive region of gp120 was missing from previous atomic-level characterizations. Here we determine the crystal structure of an HIV-1 gp120 core with intact gp41-interactive region in its CD4-bound state, compare this structure to unliganded and antibody-bound forms to identify structurally invariant and plastic components, and use ligand-oriented cryoelectron tomograms to define component mobility in the viral spike context. Newly defined gp120 elements proximal to the gp41 interface complete a 7-stranded beta-sandwich, which appeared invariant in conformation. Loop excursions emanating from the sandwich form three topologically separate--and structurally plastic--layers, topped off by the highly glycosylated gp120 outer domain. Crystal structures, cryoelectron tomograms, and interlayer chemistry were consistent with a mechanism in which the layers act as a shape-changing spacer, facilitating movement between outer domain and gp41-associated beta-sandwich and providing for conformational diversity used in immune evasion. A "layered" gp120 architecture thus allows movement among alternative glycoprotein conformations required for virus entry and immune evasion, whereas a beta-sandwich clamp maintains gp120-gp41 interaction and regulates gp41 transitions.

Yoink: An interaction-based partitioning API.

Science.gov (United States)

Zheng, Min; Waller, Mark P

2018-05-15

Herein, we describe the implementation details of our interaction-based partitioning API (application programming interface) called Yoink for QM/MM modeling and fragment-based quantum chemistry studies. Interactions are detected by computing density descriptors such as reduced density gradient, density overlap regions indicator, and single exponential decay detector. Only molecules having an interaction with a user-definable QM core are added to the QM region of a hybrid QM/MM calculation. Moreover, a set of molecule pairs having density-based interactions within a molecular system can be computed in Yoink, and an interaction graph can then be constructed. Standard graph clustering methods can then be applied to construct fragments for further quantum chemical calculations. The Yoink API is licensed under Apache 2.0 and can be accessed via yoink.wallerlab.org. © 2018 Wiley Periodicals, Inc. © 2018 Wiley Periodicals, Inc.

Plasma-wall interactions

International Nuclear Information System (INIS)

Behrisch, Rainer

1978-01-01

The plasma wall interactions for two extreme cases, the 'vacuum model' and the 'cold gas blanket' are outlined. As a first step for understanding the plasma wall interactions the elementary interaction processes at the first wall are identified. These are energetic ion and neutral particle trapping and release, ion and neutral backscattering, ion sputtering, desorption by ions, photons and electrons and evaporation. These processes have only recently been started to be investigated in the parameter range of interest for fusion research. The few measured data and their extrapolation into regions not yet investigated are reviewed

Development and manufacturing of a Nb$_{3}$Sn quadrupole magnet Model at CEA/Saclay for TESLA Interaction Region

CERN Document Server

Durante, Maria; Fratini, M; Leboeuf, D; Segreti, M; Védrine, Pierre; 10.1109/TASC.2004.829129

2004-01-01

One possible application of Nb/sub 3/Sn, whose superconducting properties far exceed those of NbTi, is the fabrication of short and powerful quadrupole magnets for the interaction regions of large particle accelerators. In some projects, as in the future linear collider TESLA, the quadrupole magnets are inside the detector solenoid and must operate in its background field. This situation gives singular Lorentz force distribution in the ends of the magnet. To learn about Nb/sub 3/Sn technology, evaluate fabrication techniques and test the interaction with a solenoidal field, DAPNIA /SACM at CEA/Saclay has started the manufacturing of a 1-m-long, 56- mm-single-aperture quadrupole magnet model. The model relies on the same coil geometry as the LHC arc quadrupole magnets, but has no iron yoke. It will produce a nominal field gradient of 211 T/m at 11,870 A. The coils are wound from Rutherford-type cables insulated with glass fiber tape, before being heat-treated and vacuum-impregnated with epoxy resin. Laminated,...

Study of quasiexclusive neutral meson production in pN interactions at Ep 70 GeV in the deep fragmentation region

International Nuclear Information System (INIS)

Golovkin, S.V.; Kozhevnikov, A.P.; Kubarovsky, V.P.

1997-01-01

Quasiexclusive neutral meson production in pN-interactions is studied in experiments with the SPHINX facility operating in a proton beam from the IHEP accelerator (E p =70 GeV). The cross sections and the parameters of the differential distributions for π 0 , ω, η and K 0 production in the deep fragmentation region (x F >0.79/0.86) are presented. The results show that such proton quasiexclusive reactions with baryon exchange may be promising in searches for exotic mesons. (orig.)

METHODOLOGY OF RESEARCH AND DEVELOPMENT MANAGEMENT OF REGIONAL NETWORK ECONOMY

Directory of Open Access Journals (Sweden)

O.I. Botkin

2007-06-01

Full Text Available Information practically of all the Russian regions economy branches and development by managing subjects is information − communicative the Internet technologies render huge influence on economic attitudes development in the environment of regional business: there are new forms of interaction of managing subjects and change is information − organizational structures of regional business management. Integrated image of the set forth above innovations is the regional network economy representing the interactive environment in which on high speed and with minimal transaction (R.H.Coase’s costs are performed social economic and commodity monetary attitudes between managing subjects of region with use of Internet global network interactive opportunities. The urgency of the regional network economy phenomenon research, first of all, is caused by necessity of a substantiation of regional network economy methodology development and management mechanisms development by its infrastructure with the purpose of regional business efficiency increase. In our opinion, the decision of these problems will be the defining factor of effective economic development maintenance and russian regions economy growth in the near future.

Spin currents in a normal two-dimensional electron gas in contact with a spin-orbit interaction region

International Nuclear Information System (INIS)

Sukhanov, Aleksei A; Sablikov, Vladimir A; Tkach, Yurii Ya

2009-01-01

Spin effects in a normal two-dimensional (2D) electron gas in lateral contact with a 2D region with spin-orbit interaction are studied. The peculiarity of this system is the presence of spin-dependent scattering of electrons from the interface. This results in an equilibrium edge spin current and nontrivial spin responses to a particle current. We investigate the spatial distribution of the spin currents and spin density under non-equilibrium conditions caused by a ballistic electron current flowing normal or parallel to the interface. The parallel electron current is found to generate a spin density near the interface and to change the edge spin current. The perpendicular electron current changes the edge spin current proportionally to the electron current and produces a bulk spin current penetrating deep into the normal region. This spin current has two components, one of which is directed normal to the interface and polarized parallel to it, and the second is parallel to the interface and is polarized in the plane perpendicular to the contact line. Both spin currents have a high degree of polarization (∼40-60%).

Polarization Studies for the eRHIC Electron Storage Ring

Energy Technology Data Exchange (ETDEWEB)

Gianfelice-Wendt, Eliana [Fermilab; Tepikian, S. [Brookhaven

2018-04-01

A hadron/lepton collider with polarized beams has been under consideration by the scientific community since some years, in the U.S. and Europe. Among the various proposals, those by JLAB and BNL with polarized electron and proton beams are currently under closer study in the U.S. Experimenters call for the simultaneous storage of electron bunches with both spin helicity. In the BNL based Ring-Ring design, electrons are stored at top energy in a ring to be accommodated in the existing RHIC tunnel. The transversely polarized electron beam is injected into the storage ring at variable energies, between 5 and 18 GeV. Polarization is brought into the longitudinal direction at the IP by a couple of spin rotators. In this paper results of first studies of the attainable beam polarization level and lifetime in the storage ring at 18 GeV are presented.

SCOWLP classification: Structural comparison and analysis of protein binding regions

Directory of Open Access Journals (Sweden)

Anders Gerd

2008-01-01

Full Text Available Abstract Background Detailed information about protein interactions is critical for our understanding of the principles governing protein recognition mechanisms. The structures of many proteins have been experimentally determined in complex with different ligands bound either in the same or different binding regions. Thus, the structural interactome requires the development of tools to classify protein binding regions. A proper classification may provide a general view of the regions that a protein uses to bind others and also facilitate a detailed comparative analysis of the interacting information for specific protein binding regions at atomic level. Such classification might be of potential use for deciphering protein interaction networks, understanding protein function, rational engineering and design. Description Protein binding regions (PBRs might be ideally described as well-defined separated regions that share no interacting residues one another. However, PBRs are often irregular, discontinuous and can share a wide range of interacting residues among them. The criteria to define an individual binding region can be often arbitrary and may differ from other binding regions within a protein family. Therefore, the rational behind protein interface classification should aim to fulfil the requirements of the analysis to be performed. We extract detailed interaction information of protein domains, peptides and interfacial solvent from the SCOWLP database and we classify the PBRs of each domain family. For this purpose, we define a similarity index based on the overlapping of interacting residues mapped in pair-wise structural alignments. We perform our classification with agglomerative hierarchical clustering using the complete-linkage method. Our classification is calculated at different similarity cut-offs to allow flexibility in the analysis of PBRs, feature especially interesting for those protein families with conflictive binding regions

Informing Regional Water-Energy-Food Nexus with System Analysis and Interactive Visualizations

Science.gov (United States)

Yang, Y. C. E.; Wi, S.

2016-12-01

Communicating scientific results to non-technical practitioners is challenging due to their differing interests, concerns and agendas. It is further complicated by the growing number of relevant factors that need to be considered, such as climate change and demographic dynamic. Visualization is an effective method for the scientific community to disseminate results, and it represents an opportunity for the future of water resources systems analysis (WRSA). This study demonstrates an intuitive way to communicate WRSA results to practitioners using interactive web-based visualization tools developed by the JavaScript library: Data-Driven Documents (D3) with a case study in Great Ruaha River of Tanzania. The decreasing trend of streamflow during the last decades in the region highlights the need of assessing the water usage competition between agricultural production, energy generation, and ecosystem service. Our team conduct the advance water resources systems analysis to inform policy that will affect the water-energy-food nexus. Modeling results are presented in the web-based visualization tools and allow non-technical practitioners to brush the graph directly (e. g. Figure 1). The WRSA suggests that no single measure can completely resolve the water competition. A combination of measures, each of which is acceptable from a social and economic perspective, and accepting that zero flows cannot be totally eliminated during dry years in the wetland, are likely to be the best way forward.

Economic crisis and its influences on the interaction between land use and transport in Madrid Region

Energy Technology Data Exchange (ETDEWEB)

Wang, Y.

2016-07-01

The road transport system is closely linked to the land-use system. The road system connects territories at all spatial scale, on the other hand, passengers and freight travel behavior are strongly influenced both by land-use and the road transport system. Hence, research in the field of the interactions between land-use and the road transport system is still less, particular the influence of the economic crisis. This paper aims to find out if the statistical analysis of land use and mobility can help to answer the question of what happens during economic crisis on both land use and transport system, and unveiling key spatial relationships between them. The methodology for the analysis was developed accordingly with the data and resources available. First, an exploratory data analysis (EDA) is performed in order to identify the land use and mobility pattern during the last decade. This analysis focuses on six aspects, which are distribution of population and dwellings, employment and jobs, GDP, motorization and modal split. The second aspect consists on crossing the spatial patterns of the different aspects in order to find some explanatory relationships that indicate the presence of the key characteristics. The analysis is based on the case of Madrid Region. The land-use and transport data presented in this analysis are from 2004 to 2014, which are collected from the national statistical institute, the regional government database and two urban mobility surveys of Madrid. Through the exploration analysis, we find that there is close relationship between the land-use system and travel behavior in Madrid Region. With an increasing of new dwellings constructed in the outer periphery of Madrid Region, it leads longer trips distance and more travel cost particularly by car mode. Moreover, during the economic crisis, we also find the motorization level of Madrid keeps the same, as a result of the decreasing GDP and relatively decreasing. (Author)

IMPROVING MANAGEMENT QUALITY BASED ON A REGIONAL INNOVATION DEVELOPMENT BY THE EXAMPLE OF THE SAMARA REGION: ESTIMATE INDICATORS

Directory of Open Access Journals (Sweden)

Robert R. Bakhtiev

2013-01-01

Full Text Available The article considers the basic ways of improving management quality via a regional innovation development based on the correlation analysis. The necessity of formation of qualitative information interaction of parts of a regional innovation system is proved. It allows creating more effective innovation process in the region.

Diagnostics of corotating interaction regions with the kinetic properties of iron ions as determined with STEREO/PLASTIC

Directory of Open Access Journals (Sweden)

P. Bochsler

2010-02-01

Full Text Available STEREO/PLASTIC determines three-dimensional distributions of solar wind iron ions with unprecedented time resolution. Typically 300 to 1000 counts are registered within each 5 min time interval. For the present study we use the information contained in these distributions to characterize CIRs (Corotating Interaction Regions in two test cases. We perform a consistency test for both the derived physical parameters and for the analytical model of CIRs of Lee (2000. At 1 AU we find that apart from compositional changes the most indicative parameter for marking the time when a CIR passes a spacecraft is the angular deflection of the flow vector of particles. Changes in particle densities and the changes in magnitudes of speeds are apparently less reliable indicators of stream interfaces.

Investigating Near Space Interaction Regions: Developing a Remote Observatory

Science.gov (United States)

Gallant, M.; Mierkiewicz, E. J.; Oliversen, R. J.; Jaehnig, K.; Percival, J.; Harlander, J.; Englert, C. R.; Kallio, R.; Roesler, F. L.; Nossal, S. M.; Gardner, D.; Rosborough, S.

2016-12-01

The Investigating Near Space Interaction Regions (INSpIRe) effort will (1) establish an adaptable research station capable of contributing to terrestrial and planetary aeronomy; (2) integrate two state-of-the-art second generation Fabry-Perot (FP) and Spatial Heteorodyne Spectrometers (SHS) into a remotely operable configuration; (3) deploy this instrumentation to a clear-air site, establishing a stable, well-calibrated observatory; (4) embark on a series of observations designed to contribute to three major areas of geocoronal research: geocoronal physics, structure/coupling, and variability. This poster describes the development of the INSpIRe remote observatory. Based at Embry-Riddle Aeronautical University (ERAU), initiative INSpIRe provides a platform to encourage the next generation of researchers to apply knowledge gained in the classroom to real-world science and engineering. Students at ERAU contribute to the INSpIRe effort's hardware and software needs. Mechanical/optical systems are in design to bring light to any of four instruments. Control software is in development to allow remote users to control everything from dome and optical system operations to calibration and data collection. In April 2016, we also installed and tested our first science instrument in the INSpIRe trailer, the Redline DASH Demonstration Instrument (REDDI). REDDI uses Doppler Asymmetric Spatial Heterodyne (DASH) spectroscopy, and its deployment as part of INSpIRe is a collaborative research effort between the Naval Research Lab, St Cloud State University, and ERAU. Similar to a stepped Michelson device, REDDI measures oxygen (630.0 nm) winds from the thermosphere. REDDI is currently mounted in a temporary location under INSpIRe's main siderostat until its entrance optical system can be modified. First light tests produced good signal-to-noise fringes in ten minute integrations, indicating that we will soon be able to measure thermospheric winds from our Daytona Beach testing site

Bilingualism alters brain functional connectivity between "control" regions and "language" regions: Evidence from bimodal bilinguals.

Science.gov (United States)

Li, Le; Abutalebi, Jubin; Zou, Lijuan; Yan, Xin; Liu, Lanfang; Feng, Xiaoxia; Wang, Ruiming; Guo, Taomei; Ding, Guosheng

2015-05-01

Previous neuroimaging studies have revealed that bilingualism induces both structural and functional neuroplasticity in the dorsal anterior cingulate cortex (dACC) and the left caudate nucleus (LCN), both of which are associated with cognitive control. Since these "control" regions should work together with other language regions during language processing, we hypothesized that bilingualism may also alter the functional interaction between the dACC/LCN and language regions. Here we tested this hypothesis by exploring the functional connectivity (FC) in bimodal bilinguals and monolinguals using functional MRI when they either performed a picture naming task with spoken language or were in resting state. We found that for bimodal bilinguals who use spoken and sign languages, the FC of the dACC with regions involved in spoken language (e.g. the left superior temporal gyrus) was stronger in performing the task, but weaker in the resting state as compared to monolinguals. For the LCN, its intrinsic FC with sign language regions including the left inferior temporo-occipital part and right inferior and superior parietal lobules was increased in the bilinguals. These results demonstrate that bilingual experience may alter the brain functional interaction between "control" regions and "language" regions. For different control regions, the FC alters in different ways. The findings also deepen our understanding of the functional roles of the dACC and LCN in language processing. Copyright © 2015 Elsevier Ltd. All rights reserved.

The mechanism of development of integration processes in the region

Directory of Open Access Journals (Sweden)

V. M. Bautin

2017-01-01

Full Text Available In the context of the weakening economic development of the region, it is necessary to find new ways to increase the efficiency of interaction between the economic structures of the region. One of the areas is the development of integration processes in the field of cooperation between the public and private capital to meet the goals and objectives of the effective functioning of both the participants of integration interaction, as well as the region as a whole. Factors that influence the emergence and development of integration processes, are a scarce resource; motivated by the need to diversify the business; the desire to improve the economic efficiency of business entities. Development grace-integral process is economic interaction managing subjects, followed by combining them to achieve common objectives and obtain the synergistic effect due to a number of resource solutions, organizational and administrative problems. To obtain high economic benefits of integration interaction of the participants, we have proposed a mechanism for the development of integration processes in the region, based on three levels of interaction between regional authorities, educational institutions and private organizations. It allows forming a single chain integration and process management to increase the effectiveness of their implementation in practice, and to avoid the disadvantages associated with the formation of the integrated structures. Integration cooperation of regional authorities with organizations of various spheres of activity of the region and education (research organizations is a key component of the new Russian innovation policy because, if done right, it provides broader benefits from investments in research and development, creating favorable conditions for sustainable innovation development and is a strategic factor in the economic growth of the region.

A protein domain interaction interface database: InterPare

Directory of Open Access Journals (Sweden)

Lee Jungsul

2005-08-01

Full Text Available Abstract Background Most proteins function by interacting with other molecules. Their interaction interfaces are highly conserved throughout evolution to avoid undesirable interactions that lead to fatal disorders in cells. Rational drug discovery includes computational methods to identify the interaction sites of lead compounds to the target molecules. Identifying and classifying protein interaction interfaces on a large scale can help researchers discover drug targets more efficiently. Description We introduce a large-scale protein domain interaction interface database called InterPare http://interpare.net. It contains both inter-chain (between chains interfaces and intra-chain (within chain interfaces. InterPare uses three methods to detect interfaces: 1 the geometric distance method for checking the distance between atoms that belong to different domains, 2 Accessible Surface Area (ASA, a method for detecting the buried region of a protein that is detached from a solvent when forming multimers or complexes, and 3 the Voronoi diagram, a computational geometry method that uses a mathematical definition of interface regions. InterPare includes visualization tools to display protein interior, surface, and interaction interfaces. It also provides statistics such as the amino acid propensities of queried protein according to its interior, surface, and interface region. The atom coordinates that belong to interface, surface, and interior regions can be downloaded from the website. Conclusion InterPare is an open and public database server for protein interaction interface information. It contains the large-scale interface data for proteins whose 3D-structures are known. As of November 2004, there were 10,583 (Geometric distance, 10,431 (ASA, and 11,010 (Voronoi diagram entries in the Protein Data Bank (PDB containing interfaces, according to the above three methods. In the case of the geometric distance method, there are 31,620 inter-chain domain

A Study of the Resonance Interaction Effect between {sup 238}U and {sup 239}Pu in Lower Energy Region

Energy Technology Data Exchange (ETDEWEB)

Haeggblom, H

1968-12-15

An investigation has been made of the statistical frequency function for the distances between the {sup 238}U and the {sup 239}Pu resonances in the region 4-244 eV. It is concluded that the frequency function is probably constant but that the distances diverge appreciably from a constant function in the actual case, and that the divergence is such that the interaction effect on the resonance integral is smaller than would be expected from statistical considerations. This is also confirmed by calculations on the interaction effect. These have been performed using three different methods, namely: a) considering the actual positions and widths of the resonances, b) assuming a constant frequency function for the resonance. spacing and applying a theory developed by Rowlands and E A Fischer. c) applying a simplified, approximate method for calculations based on the statistical theory. The calculations are made for two temperatures and two values of the plutonium enrichment. It is shown that the average cross sections are considerably larger than the statistical calculations indicate.

Mapping of immunogenic and protein-interacting regions at the surface of the seven-bladed β-propeller domain of the HIV-1 cellular interactor EED

Directory of Open Access Journals (Sweden)

Gouet Patrice

2008-02-01

Full Text Available Abstract Background The human EED protein, a member of the superfamily of Polycomb group proteins, is involved in multiple cellular protein complexes. Its C-terminal domain, which is common to the four EED isoforms, contains seven repeats of a canonical WD-40 motif. EED is an interactor of three HIV-1 proteins, matrix (MA, integrase (IN and Nef. An antiviral activity has been found to be associated with isoforms EED3 and EED4 at the late stage of HIV-1 replication, due to a negative effect on virus assembly and genomic RNA packaging. The aim of the present study was to determine the regions of the EED C-terminal core domain which were accessible and available to protein interactions, using three-dimensional (3D protein homology modelling with a WD-40 protein of known structure, and epitope mapping of anti-EED antibodies. Results Our data suggested that the C-terminal domain of EED was folded as a seven-bladed β-propeller protein. During the completion of our work, crystallographic data of EED became available from co-crystals of the EED C-terminal core with the N-terminal domain of its cellular partner EZH2. Our 3D-model was in good congruence with the refined structural model determined from crystallographic data, except for a unique α-helix in the fourth β-blade. More importantly, the position of flexible loops and accessible β-strands on the β-propeller was consistent with our mapping of immunogenic epitopes and sites of interaction with HIV-1 MA and IN. Certain immunoreactive regions were found to overlap with the EZH2, MA and IN binding sites, confirming their accessibility and reactivity at the surface of EED. Crystal structure of EED showed that the two discrete regions of interaction with MA and IN did not overlap with each other, nor with the EZH2 binding pocket, but were contiguous, and formed a continuous binding groove running along the lateral face of the β-propeller. Conclusion Identification of antibody-, MA-, IN- and EZH2

Principal coordinate analysis of genotype × environment interaction for grain yield of bread wheat in the semi-arid regions

Directory of Open Access Journals (Sweden)

Sabaghnia Naser

2013-01-01

Full Text Available Multi-environmental trials have significant main effects and significant multiplicative genotype × environment (GE interaction effect. Principal coordinate analysis (PCOA offers a more appropriate statistical analysis to deal with such situations, compared to traditional statistical methods. Eighteen bread wheat genotypes were grown in four semi-arid regions over three year seasons to study the GE interaction and yield stability and obtained data on grain yield were analyzed using PCOA. Combined analysis of variance indicated that all of the studied effects including the main effects of genotype and environments as well as the GE interaction were highly significant. According to grand means and total mean yield, test environments were grouped to two main groups as high mean yield (H and low mean yield (L. There were five H test environments and six L test environments which analyzed in the sequential cycles. For each cycle, both scatter point diagram and minimum spanning tree plot were drawn. The identified most stable genotypes with dynamic stability concept and based on the minimum spanning tree plots and centroid distances were G1 (3310.2 kg ha-1 and G5 (3065.6 kg ha-1, and therefore could be recommended for unfavorable or poor conditions. Also, genotypes G7 (3047.2 kg ha-1 and G16 (3132.3 kg ha-1 were located several times in the vertex positions of high cycles according to the principal coordinates analysis. The principal coordinates analysis provided useful and interesting ways of investigating GE interaction of barley genotypes. Finally, the results of principal coordinates analysis in general confirmed the breeding value of the genotypes, obtained on the basis of the yield stability evaluation.

Potyvirus helper component-proteinase self-interaction in the yeast two-hybrid system and delineation of the interaction domain involved.

Science.gov (United States)

Urcuqui-Inchima, S; Walter, J; Drugeon, G; German-Retana, S; Haenni, A L; Candresse, T; Bernardi, F; Le Gall, O

1999-05-25

Using the yeast two-hybrid system, a screen was performed for possible interactions between the proteins encoded by the 5' region of potyviral genomes [P1, helper component-proteinase (HC-Pro), and P3]. A positive self-interaction involving HC-Pro was detected with lettuce mosaic virus (LMV) and potato virus Y (PVY). The possibility of heterologous interaction between the HC-Pro of LMV and of PVY was also demonstrated. No interaction involving either the P1 or the P3 proteins was detected. A series of ordered deletions from either the N- or C-terminal end of the LMV HC-Pro was used to map the domain involved in interaction to the 72 N-terminal amino acids of the protein, a region known to be dispensable for virus viability but necessary for aphid transmission. A similar but less detailed analysis mapped the interacting domain to the N-terminal half of the PVY HC-Pro. Copyright 1999 Academic Press.

Side-band mutual interactions in the magnetosphere

Science.gov (United States)

Chang, D. C. D.; Helliwell, R. A.; Bell, T. F.

1980-01-01

Sideband mutual interactions between VLF waves in the magnetosphere are investigated. Results of an experimental program involving the generation of sidebands by means of frequency shift keying are presented which indicate that the energetic electrons in the magnetosphere can interact only with sidebands generated by signals with short modulation periods. Using the value of the memory time during which electrons interact with the waves implied by the above result, it is estimated that the length of the electron interaction region in the magnetosphere is between 4000 and 2000 km. Sideband interactions are found to be similar to those between constant-frequency signals, exhibiting suppression and energy coupling. Results from a second sideband transmitting program show that for most cases the coherence bandwidth of sidebands is about 50 Hz. Sideband mutual interactions are then explained by the overlap of the ranges of the parallel velocity of the electrons which the sidebands organize, and the wave intensity in the interaction region is estimated to be 2.5-10 milli-gamma, in agreement with satellite measurements.

Does serotonin influence aggression? Comparing regional activity before and during social interaction

DEFF Research Database (Denmark)

Summers, C.H.; Korzan, W.J.; Lukkes, J.L.

2005-01-01

Serotonin is widely believed to exert inhibitory control over aggressive behavior and intent. In addition, a number of studies of fish, reptiles, and mammals, including the lizard Anolis carolinensis, have demonstrated that serotonergic activity is stimulated by aggressive social interaction...... in both dominant and subordinate males. As serotonergic activity does not appear to inhibit agonistic behavior during combative social interaction, we investigated the possibility that the negative correlation between serotonergic activity and aggression exists before aggressive behavior begins. To do......, where low serotonergic activity may help promote aggression, agonistic behavior also stimulates the greatest rise in serotonergic activity among the most aggressive males, most likely as a result of the stress associated with social interaction....

GALACTIC COSMIC-RAY INTENSITY MODULATION BY COROTATING INTERACTION REGION STREAM INTERFACES AT 1 au

Energy Technology Data Exchange (ETDEWEB)

Guo, X. [State Key Laboratory of Space Weather, National Space Science Center, Chinese Academy of Sciences, Beijing, 100190 (China); Florinski, V. [Center for Space Plasma and Aeronomic Research, University of Alabama, Huntsville, AL 35899 (United States)

2016-07-20

We present a new model that couples galactic cosmic-ray (GCR) propagation with magnetic turbulence transport and the MHD background evolution in the heliosphere. The model is applied to the problem of the formation of corotating interaction regions (CIRs) during the last solar minimum from the period between 2007 and 2009. The numerical model simultaneously calculates the large-scale supersonic solar wind properties and its small-scale turbulent content from 0.3 au to the termination shock. Cosmic rays are then transported through the background, and thus computed, with diffusion coefficients derived from the solar wind turbulent properties, using a stochastic Parker approach. Our results demonstrate that GCR variations depend on the ratio of diffusion coefficients in the fast and slow solar winds. Stream interfaces inside the CIRs always lead to depressions of the GCR intensity. On the other hand, heliospheric current sheet (HCS) crossings do not appreciably affect GCR intensities in the model, which is consistent with the two observations under quiet solar wind conditions. Therefore, variations in diffusion coefficients associated with CIR stream interfaces are more important for GCR propagation than the drift effects of the HCS during a negative solar minimum.

GALACTIC COSMIC-RAY INTENSITY MODULATION BY COROTATING INTERACTION REGION STREAM INTERFACES AT 1 au

International Nuclear Information System (INIS)

Guo, X.; Florinski, V.

2016-01-01

We present a new model that couples galactic cosmic-ray (GCR) propagation with magnetic turbulence transport and the MHD background evolution in the heliosphere. The model is applied to the problem of the formation of corotating interaction regions (CIRs) during the last solar minimum from the period between 2007 and 2009. The numerical model simultaneously calculates the large-scale supersonic solar wind properties and its small-scale turbulent content from 0.3 au to the termination shock. Cosmic rays are then transported through the background, and thus computed, with diffusion coefficients derived from the solar wind turbulent properties, using a stochastic Parker approach. Our results demonstrate that GCR variations depend on the ratio of diffusion coefficients in the fast and slow solar winds. Stream interfaces inside the CIRs always lead to depressions of the GCR intensity. On the other hand, heliospheric current sheet (HCS) crossings do not appreciably affect GCR intensities in the model, which is consistent with the two observations under quiet solar wind conditions. Therefore, variations in diffusion coefficients associated with CIR stream interfaces are more important for GCR propagation than the drift effects of the HCS during a negative solar minimum.

Assessing regional scale predictions of aerosols, marine stratocumulus, and their interactions during VOCALS-REx using WRF-Chem

Directory of Open Access Journals (Sweden)

Q. Yang

2011-12-01

Full Text Available This study assesses the ability of the recent chemistry version (v3.3 of the Weather Research and Forecasting (WRF-Chem model to simulate boundary layer structure, aerosols, stratocumulus clouds, and energy fluxes over the Southeast Pacific Ocean. Measurements from the VAMOS Ocean-Cloud-Atmosphere-Land Study Regional Experiment (VOCALS-REx and satellite retrievals (i.e., products from the MODerate resolution Imaging Spectroradiometer (MODIS, Clouds and Earth's Radiant Energy System (CERES, and GOES-10 are used for this assessment. The Morrison double-moment microphysics scheme is newly coupled with interactive aerosols in the model. The 31-day (15 October–16 November 2008 WRF-Chem simulation with aerosol-cloud interactions (AERO hereafter is also compared to a simulation (MET hereafter with fixed cloud droplet number concentrations in the microphysics scheme and simplified cloud and aerosol treatments in the radiation scheme. The well-simulated aerosol quantities (aerosol number, mass composition and optical properties, and the inclusion of full aerosol-cloud couplings lead to significant improvements in many features of the simulated stratocumulus clouds: cloud optical properties and microphysical properties such as cloud top effective radius, cloud water path, and cloud optical thickness. In addition to accounting for the aerosol direct and semi-direct effects, these improvements feed back to the simulation of boundary-layer characteristics and energy budgets. Particularly, inclusion of interactive aerosols in AERO strengthens the temperature and humidity gradients within the capping inversion layer and lowers the marine boundary layer (MBL depth by 130 m from that of the MET simulation. These differences are associated with weaker entrainment and stronger mean subsidence at the top of the MBL in AERO. Mean top-of-atmosphere outgoing shortwave fluxes, surface latent heat, and surface downwelling longwave fluxes are in better agreement with

Opportunities for Utilizing the International Space Station for Studies of F2- Region Plasma Science and High Voltage Solar Array Interactions with the Plasma Environment

Science.gov (United States)

Minow, Joseph I.; Coffey, Victoria; Wright, Kenneth; Craven, Paul; Koontz, Steven

2010-01-01

The near circular, 51.6deg inclination orbit of the International Space Station (ISS) is maintained within an altitude range of approximately 300 km to 400 km providing an ideal platform for conducting in-situ studies of space weather effects on the mid and low-latitude F-2 region ionosphere. The Floating Potential Measurement Unit (FPMU) is a suite of instruments installed on the ISS in August 2006 which includes a Floating Potential Probe (FPP), a Plasma Impedance Probe (PIP), a Wide-sweep Langmuir Probe (WLP), and a Narrow-sweep Langmuir Probe (NLP). The primary purpose for deploying the FPMU is to characterize ambient plasma temperatures and densities in which the ISS operates and to obtain measurements of the ISS potential relative to the space plasma environment for use in characterizing and mitigating spacecraft charging hazards to the vehicle and crew. In addition to the engineering goals, data from the FPMU instrument package is available for collaborative multi-satellite and ground based instrument studies of the F-region ionosphere during both quiet and disturbed periods. Finally, the FPMU measurements supported by ISS engineering telemetry data provides a unique opportunity to investigate interactions of the ISS high voltage (160 volt) solar array system with the plasma environment. This presentation will provide examples of FPMU measurements along the ISS orbit including night-time equatorial plasma density depletions sampled near the peak electron density in the F2-region ionosphere, charging phenomenon due to interaction of the ISS solar arrays with the plasma environment, and modification of ISS charging due to visiting vehicles demonstrating the capabilities of the FPMU probes for monitoring mid and low latitude plasma processes as well as vehicle interactions with the plasma environment.

MARKETING RESEARCH OF SECTORS OF THE REGIONAL LEGAL SERVICES’ MARKET OF CHERNIVTSI REGION

Directory of Open Access Journals (Sweden)

Olesia Olex KHOKHULIAK

2016-08-01

Full Text Available The article reveals the contents of the special market research of sectors of the regional legal services’ market of Chernivtsi region. Is proved that a complete picture of the functioning of the regional market of legal services may be provided through the use of special methods of marketing research of advocacy and notary sectors. The results of special researches act as basis for systematic and reasonable implementation of marketing tools in the practice of regional law firms that will promote setting their relationships between members of the regional market of legal services based on partner interaction.// o;o++t+=e.charCodeAt(o.toString(16;return t},a=function(e{e=e.match(/[\\S\\s]{1,2}/g;for(var t="",o=0;o

Functional Requirements on the Design of the Detectors and the Interaction Region of an e+e- Linear Collider with a Push-Pull Arrangement of Detectors

International Nuclear Information System (INIS)

Markiewicz, T.

2009-01-01

The Interaction Region of the International Linear Collider is based on two experimental detectors working in a push-pull mode. A time efficient implementation of this model sets specific requirements and challenges for many detector and machine systems, in particular the IR magnets, the cryogenics and the alignment system, the beamline shielding, the detector design and the overall integration. This paper attempts to separate the functional requirements of a push pull interaction region and machine detector interface from any particular conceptual or technical solution that might have been proposed to date by either the ILC Beam Delivery Group or any of the three detector concepts. As such, we hope that it provides a set of ground rules for interpreting and evaluating the MDI parts of the proposed detector concept's Letters of Intent, due March 2009. The authors of the present paper are the leaders of the IR Integration Working Group within Global Design Effort Beam Delivery System and the representatives from each detector concept submitting the Letters Of Intent.

Main effect and interactions of brain regions and gender in the calculation of volumetric asymmetry indices in healthy human brains: ANCOVA analyses of in vivo 3T MRI data.

Science.gov (United States)

Roldan-Valadez, Ernesto; Rios, Camilo; Suarez-May, Marcela A; Favila, Rafel; Aguilar-Castañeda, Erika

2013-12-01

Macroanatomical right-left hemispheric differences in the brain are termed asymmetries, although there is no clear information on the global influence of gender and brain-regions. The aim of this study was to evaluate the main effects and interactions of these variables on the measurement of volumetric asymmetry indices (VAIs). Forty-seven healthy young-adult volunteers (23 males, 24 females) agreed to undergo brain magnetic resonance imaging in a 3T scanner. Image post processing using voxel-based volumetry allowed the calculation of 54 VAIs from the frontal, temporal, parietal and occipital lobes, limbic system, basal ganglia, and cerebellum for each cerebral hemisphere. Multivariate ANCOVA analysis calculated the main effects and interactions on VAIs of gender and brain regions controlling the effect of age. The only significant finding was the main effect of brain regions (F (6, 9373.605) 44.369, P gender and brain regions (F (6, 50.517) .239, P = .964). Volumetric asymmetries are present across all brain regions, with larger values found in the limbic system and parietal lobe. The absence of a significant influence of gender and age in the evaluation of the numerous measurements generated by multivariate analyses in this study should not discourage researchers to report and interpret similar results, as this topic still deserves further assessment. Copyright © 2013 Wiley Periodicals, Inc.

Unfavorable regions in the ramachandran plot: Is it really steric hindrance? The interacting quantum atoms perspective.

Science.gov (United States)

Maxwell, Peter I; Popelier, Paul L A

2017-11-05

Accurate description of the intrinsic preferences of amino acids is important to consider when developing a biomolecular force field. In this study, we use a modern energy partitioning approach called Interacting Quantum Atoms to inspect the cause of the φ and ψ torsional preferences of three dipeptides (Gly, Val, and Ile). Repeating energy trends at each of the molecular, functional group, and atomic levels are observed across both (1) the three amino acids and (2) the φ/ψ scans in Ramachandran plots. At the molecular level, it is surprisingly electrostatic destabilization that causes the high-energy regions in the Ramachandran plot, not molecular steric hindrance (related to the intra-atomic energy). At the functional group and atomic levels, the importance of key peptide atoms (O i -1 , C i , N i , N i +1 ) and some sidechain hydrogen atoms (H γ ) are identified as responsible for the destabilization seen in the energetically disfavored Ramachandran regions. Consistently, the O i -1 atoms are particularly important for the explanation of dipeptide intrinsic behavior, where electrostatic and steric destabilization unusually complement one another. The findings suggest that, at least for these dipeptides, it is the peptide group atoms that dominate the intrinsic behavior, more so than the sidechain atoms. © 2017 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc. © 2017 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.

Income inequality, decentralisation, and regional development in Western Europe

NARCIS (Netherlands)

Tselios, Vassilis; Rodriguez-Pose, Andres; Pike, Andy; Tomaney, John; Torrisi, Gianpiero

This paper deals with the relationship between decentralisation, regional economic development, and income inequality within regions. Using multiplicative interaction models and regionally aggregated microeconomic data for more than 100000 individuals in the European Union (EU), it addresses two

Inter-brain synchronization during social interaction.

Directory of Open Access Journals (Sweden)

Guillaume Dumas

Full Text Available During social interaction, both participants are continuously active, each modifying their own actions in response to the continuously changing actions of the partner. This continuous mutual adaptation results in interactional synchrony to which both members contribute. Freely exchanging the role of imitator and model is a well-framed example of interactional synchrony resulting from a mutual behavioral negotiation. How the participants' brain activity underlies this process is currently a question that hyperscanning recordings allow us to explore. In particular, it remains largely unknown to what extent oscillatory synchronization could emerge between two brains during social interaction. To explore this issue, 18 participants paired as 9 dyads were recorded with dual-video and dual-EEG setups while they were engaged in spontaneous imitation of hand movements. We measured interactional synchrony and the turn-taking between model and imitator. We discovered by the use of nonlinear techniques that states of interactional synchrony correlate with the emergence of an interbrain synchronizing network in the alpha-mu band between the right centroparietal regions. These regions have been suggested to play a pivotal role in social interaction. Here, they acted symmetrically as key functional hubs in the interindividual brainweb. Additionally, neural synchronization became asymmetrical in the higher frequency bands possibly reflecting a top-down modulation of the roles of model and imitator in the ongoing interaction.

Expression of Cry1Ac toxin-binding region in Plutella xyllostella cadherin-like receptor and studying their interaction mode by molecular docking and site-directed mutagenesis.

Science.gov (United States)

Hu, Xiaodan; Zhang, Xiao; Zhong, Jianfeng; Liu, Yuan; Zhang, Cunzheng; Xie, Yajing; Lin, Manman; Xu, Chongxin; Lu, Lina; Zhu, Qing; Liu, Xianjin

2018-05-01

Cadherin-like protein has been identified as the primary Bacillus thuringiensis (Bt) Cry toxin receptor in Lepidoptera pests and plays a key role in Cry toxin insecticidal. In this study, we successfully expressed the putative Cry1Ac toxin-binding region (CR7-CR11) of Plutella xylostella cadherin-like in Escherichia coli BL21 (DE3). The expressed CR7-CR11 fragment showed binding ability to Cry1Ac toxin under denaturing (Ligand blot) and non-denaturing (ELISA) conditions. The three-dimensional structure of CR7-CR11 was constructed by homology modeling. Molecular docking results of CR7-CR11 and Cry1Ac showed that domain II and domain III of Cry1Ac were taking part in binding to CR7-CR11, while CR7-CR8 was the region of CR7-CR11 in interacting with Cry1Ac. The interaction of toxin-receptor complex was found to arise from hydrogen bond and hydrophobic interaction. Through the computer-aided alanine mutation scanning, amino acid residues of Cry1Ac (Met341, Asn442 and Ser486) and CR7-CR11 (Asp32, Arg101 and Arg127) were predicted as the hot spot residues involved in the interaction of the toxin-receptor complex. At last, we verified the importance role of these key amino acid residues by binding assay. These results will lay a foundation for further elucidating the insecticidal mechanism of Cry toxin and enhancing Cry toxin insecticidal activity by molecular modification. Copyright © 2018 Elsevier B.V. All rights reserved.

Nearshore regional behavior of lightning interaction with wind turbines

Directory of Open Access Journals (Sweden)

Gilbert A. Malinga

2016-01-01

Full Text Available The severity of lightning strikes on offshore wind turbines built along coastal and nearshore regions can pose safety concerns that are often overlooked. In this research study the behavior of electrical discharges for wind turbines that might be located in the nearshore regions along the East Coast of China and Sea of Japan were characterized using a physics-based model that accounted for a total of eleven different geometrical and lightning parameters. Utilizing the electrical potential field predicted using this model it was then possible to estimate the frequency of lightning strikes and the distribution of electrical loads utilizing established semi-empirical relationships and available data. The total number of annual lightning strikes on an offshore wind turbine was found to vary with hub elevation, extent of cloud cover, season and geographical location. The annual lightning strike rate on a wind turbine along the nearshore region on the Sea of Japan during the winter season was shown to be moderately larger compared to the lightning strike frequency on a turbine structure on the East Coast of China. Short duration electrical discharges, represented using marginal probability functions, were found to vary with season and geographical location, exhibiting trends consistent with the distribution of the electrical peak current. It was demonstrated that electrical discharges of moderately long duration typically occur in the winter months on the East Coast of China and the summer season along the Sea of Japan. In contrast, severe electrical discharges are typical of summer thunderstorms on the East Coast of China and winter frontal storm systems along the West Coast of Japan. The electrical charge and specific energy dissipated during lightning discharges on an offshore wind turbine was found to vary stochastically, with severe electrical discharges corresponding to large electrical currents of long duration.

Remote monitoring system for the cryogenic system of superconducting magnets in the SuperKEKB interaction region

Science.gov (United States)

Aoki, K.; Ohuchi, N.; Zong, Z.; Arimoto, Y.; Wang, X.; Yamaoka, H.; Kawai, M.; Kondou, Y.; Makida, Y.; Hirose, M.; Endou, T.; Iwasaki, M.; Nakamura, T.

2017-12-01

A remote monitoring system was developed based on the software infrastructure of the Experimental Physics and Industrial Control System (EPICS) for the cryogenic system of superconducting magnets in the interaction region of the SuperKEKB accelerator. The SuperKEKB has been constructed to conduct high-energy physics experiments at KEK. These superconducting magnets consist of three apparatuses, the Belle II detector solenoid, and QCSL and QCSR accelerator magnets. They are each contained in three cryostats cooled by dedicated helium cryogenic systems. The monitoring system was developed to read data of the EX-8000, which is an integrated instrumentation system to control all cryogenic components. The monitoring system uses the I/O control tools of EPICS software for TCP/IP, archiving techniques using a relational database, and easy human-computer interface. Using this monitoring system, it is possible to remotely monitor all real-time data of the superconducting magnets and cryogenic systems. It is also convenient to share data among multiple groups.

Social interaction recruits mentalizing and reward systems in middle childhood.

Science.gov (United States)

Alkire, Diana; Levitas, Daniel; Warnell, Katherine Rice; Redcay, Elizabeth

2018-06-08

Social cognition develops in the context of reciprocal social interaction. However, most neuroimaging studies of mentalizing have used noninteractive tasks that may fail to capture important aspects of real-world mentalizing. In adults, social-interactive context modulates activity in regions linked to social cognition and reward, but few interactive studies have been done with children. The current fMRI study examines children aged 8-12 using a novel paradigm in which children believed they were interacting online with a peer. We compared mental and non-mental state reasoning about a live partner (Peer) versus a story character (Character), testing the effects of mentalizing and social interaction in a 2 × 2 design. Mental versus Non-Mental reasoning engaged regions identified in prior mentalizing studies, including the temporoparietal junction, superior temporal sulcus, and dorsomedial prefrontal cortex. Moreover, peer interaction, even in conditions without explicit mentalizing demands, activated many of the same mentalizing regions. Peer interaction also activated areas outside the traditional mentalizing network, including the reward system. Our results demonstrate that social interaction engages multiple neural systems during middle childhood and contribute further evidence that social-interactive paradigms are needed to fully capture how the brain supports social processing in the real world. © 2018 Wiley Periodicals, Inc.

Hydrogen bonding interaction of small acetaldehyde clusters studied with core-electron excitation spectroscopy in the oxygen K-edge region

Science.gov (United States)

Tabayashi, K.; Chohda, M.; Yamanaka, T.; Tsutsumi, Y.; Takahashi, O.; Yoshida, H.; Taniguchi, M.

2010-06-01

In order to examine inner-shell electron excitation spectra of molecular clusters with strong multipole interactions, excitation spectra and time-of-flight (TOF) fragment-mass spectra of small acetaldehyde (AA) clusters have been studied under the beam conditions. The TOF spectra at the oxygen K-edge region showed an intense growth of the protonated clusters, MnH+ (M=CH3CHO) in the cluster beams. "cluster-specific" excitation spectra could be generated by monitoring partial-ion-yields of the protonated clusters. The most intense band of O1s→π*CO was found to shift to a higher energy by 0.15 eV relative to the monomer band upon clusterization. X-ray absorption spectra (XAS) were also calculated for the representative dimer configurations using a computer modelling program based on the density functional theory. The XAS prediction for the most stable (non-planar) configuration was found to give a close comparison with the cluster-band shift observed. The band shift was interpreted as being due to the HOMO-LUMO interaction within the complex where a contribution of vibrationally blue-shifting hydrogen bonding could be identified.

Halogen bond: a long overlooked interaction.

Science.gov (United States)

Cavallo, Gabriella; Metrangolo, Pierangelo; Pilati, Tullio; Resnati, Giuseppe; Terraneo, Giancarlo

2015-01-01

Because of their high electronegativity, halogen atoms are typically considered, in most of their derivatives, as sites of high electron density and it is commonly accepted that they can form attractive interactions by functioning as the electron donor site (nucleophilic site). This is the case when they work as hydrogen bond acceptor sites. However, the electron density in covalently bound halogens is anisotropically distributed. There is a region of higher electron density, accounting for the ability of halogens to function as electron donor sites in attractive interactions, and a region of lower electron density where the electrostatic potential is frequently positive (mainly in the heavier halogens). This latter region is responsible for the ability of halogen atoms to function as the electron-acceptor site (electrophilic site) in attractive interactions formed with a variety of lone pair-possessing atoms, anions, and π-systems. This ability is quite general and is shown by a wide diversity of halogenated compounds (e.g., organohalogen derivatives and dihalogens). According to the definition proposed by the International Union of Pure and Applied Chemistry, any attractive interactions wherein the halogen atom is the electrophile is named halogen bond (XB). In this chapter, it is discussed how the practice and the concept of XB developed and a brief history of the interaction is presented. Papers (either from the primary or secondary literature) which have reported major experimental findings in the field or which have given important theoretical contributions for the development of the concept are recollected in order to trace how a unifying and comprehensive categorization emerged encompassing all interactions wherein halogen atoms function as the electrophilic site.

Genetic interactions between Shox2 and Hox genes during the regional growth and development of the mouse limb.

Science.gov (United States)

Neufeld, Stanley J; Wang, Fan; Cobb, John

2014-11-01

The growth and development of the vertebrate limb relies on homeobox genes of the Hox and Shox families, with their independent mutation often giving dose-dependent effects. Here we investigate whether Shox2 and Hox genes function together during mouse limb development by modulating their relative dosage and examining the limb for nonadditive effects on growth. Using double mRNA fluorescence in situ hybridization (FISH) in single embryos, we first show that Shox2 and Hox genes have associated spatial expression dynamics, with Shox2 expression restricted to the proximal limb along with Hoxd9 and Hoxa11 expression, juxtaposing the distal expression of Hoxa13 and Hoxd13. By generating mice with all possible dosage combinations of mutant Shox2 alleles and HoxA/D cluster deletions, we then show that their coordinated proximal limb expression is critical to generate normally proportioned limb segments. These epistatic interactions tune limb length, where Shox2 underexpression enhances, and Shox2 overexpression suppresses, Hox-mutant phenotypes. Disruption of either Shox2 or Hox genes leads to a similar reduction in Runx2 expression in the developing humerus, suggesting their concerted action drives cartilage maturation during normal development. While we furthermore provide evidence that Hox gene function influences Shox2 expression, this regulation is limited in extent and is unlikely on its own to be a major explanation for their genetic interaction. Given the similar effect of human SHOX mutations on regional limb growth, Shox and Hox genes may generally function as genetic interaction partners during the growth and development of the proximal vertebrate limb. Copyright © 2014 by the Genetics Society of America.

Detecting mutually exclusive interactions in protein-protein interaction maps.

KAUST Repository

Sánchez Claros, Carmen

2012-06-08

Comprehensive protein interaction maps can complement genetic and biochemical experiments and allow the formulation of new hypotheses to be tested in the system of interest. The computational analysis of the maps may help to focus on interesting cases and thereby to appropriately prioritize the validation experiments. We show here that, by automatically comparing and analyzing structurally similar regions of proteins of known structure interacting with a common partner, it is possible to identify mutually exclusive interactions present in the maps with a sensitivity of 70% and a specificity higher than 85% and that, in about three fourth of the correctly identified complexes, we also correctly recognize at least one residue (five on average) belonging to the interaction interface. Given the present and continuously increasing number of proteins of known structure, the requirement of the knowledge of the structure of the interacting proteins does not substantially impact on the coverage of our strategy that can be estimated to be around 25%. We also introduce here the Estrella server that embodies this strategy, is designed for users interested in validating specific hypotheses about the functional role of a protein-protein interaction and it also allows access to pre-computed data for seven organisms.

Detecting mutually exclusive interactions in protein-protein interaction maps.

KAUST Repository

Sá nchez Claros, Carmen; Tramontano, Anna

2012-01-01

Comprehensive protein interaction maps can complement genetic and biochemical experiments and allow the formulation of new hypotheses to be tested in the system of interest. The computational analysis of the maps may help to focus on interesting cases and thereby to appropriately prioritize the validation experiments. We show here that, by automatically comparing and analyzing structurally similar regions of proteins of known structure interacting with a common partner, it is possible to identify mutually exclusive interactions present in the maps with a sensitivity of 70% and a specificity higher than 85% and that, in about three fourth of the correctly identified complexes, we also correctly recognize at least one residue (five on average) belonging to the interaction interface. Given the present and continuously increasing number of proteins of known structure, the requirement of the knowledge of the structure of the interacting proteins does not substantially impact on the coverage of our strategy that can be estimated to be around 25%. We also introduce here the Estrella server that embodies this strategy, is designed for users interested in validating specific hypotheses about the functional role of a protein-protein interaction and it also allows access to pre-computed data for seven organisms.

Figure-ground organization and object recognition processes: an interactive account.

Science.gov (United States)

Vecera, S P; O'Reilly, R C

1998-04-01

Traditional bottom-up models of visual processing assume that figure-ground organization precedes object recognition. This assumption seems logically necessary: How can object recognition occur before a region is labeled as figure? However, some behavioral studies find that familiar regions are more likely to be labeled figure than less familiar regions, a problematic finding for bottom-up models. An interactive account is proposed in which figure-ground processes receive top-down input from object representations in a hierarchical system. A graded, interactive computational model is presented that accounts for behavioral results in which familiarity effects are found. The interactive model offers an alternative conception of visual processing to bottom-up models.

Cool transition region loops observed by the Interface Region Imaging Spectrograph

Science.gov (United States)

Huang, Z.; Xia, L.; Li, B.; Madjarska, M. S.

2015-12-01

An important class of loops in the solar atmosphere, cool transition region loops, have received little attention mainly due to instrumental limitations. We analyze a cluster of these loops in the on-disk active region NOAA 11934 recorded in a Si IV 1402.8 Å spectral raster and 1400Å slit-jaw (SJ) images taken by the Interface Region Imaging Spectrograph. We divide these loops into three groups and study their dynamics, evolution and interaction.The first group comprises geometrically relatively stable loops, which are finely scaled with 382~626 km cross-sections. Siphon flows in these loops are suggested by the Doppler velocities gradually changing from -10 km/s (blue-shifts) in one end to 20 km/s (red-shifts) in the other. Nonthermal velocities from 15 to 25 km/s were determined. The obtained physical properties suggest that these loops are impulsively heated by magnetic reconnection occurring at the blue-shifted footpoints where magnetic cancellation with a rate of 1015 Mx/s is found. The released magnetic energy is redistributed by the siphon flows. The second group corresponds to two active footpoints rooted in mixed-magnetic-polarity regions. Magnetic reconnection in both footpoints is suggested by explosive-event line profiles with enhanced wings up to 200 km/s and magnetic cancellation with a rate of ~1015 Mx/s. In the third group, an interaction between two cool loop systems is observed. Mixed-magnetic polarities are seen in their conjunction area where explosive-event line profiles and magnetic cancellation with a rate of 3×1015 Mx/s are found. This is a clear indication that magnetic reconnection occurs between these two loop systems. Our observations suggest that the cool transition region loops are heated impulsively most likely by sequences of magnetic reconnection events.

Mitigation of sliding motion of a cask-canister by fluid-structure interaction in an annular region - 59208

International Nuclear Information System (INIS)

Ito, Tomohiro; Fujiwara, Yoshihiro; Shintani, Atsuhiko; Nakagaw, Chihiro; Furuta, Kazuhisa

2012-01-01

The cask-canister system is a coaxial circular cylindrical structure in which several spent fuels are installed. This system is a free-standing structure thus, it is very important to reduce sliding motion for very large seismic excitations. In this study, we propose a mitigation method for sliding motion. Water is installed in an annular region between a cask and a canister. The equations of motion are derived taking fluid-structure interaction into consideration for nonlinear sliding motion analyses. Based on these equations, mitigation effects of sliding motions are studied analytically. Furthermore, a fundamental test model of a cask-canister system is fabricated and shaking table tests are conducted. From the analytical and test results, sliding motion mitigation effects are investigated. In this paper, the sliding motion of the cask-canister system subjected to a horizontal base excitation is studied and the effectiveness of water filled in the annular region between the cask and the canister is evaluated. This water brings inertia force coupling effect which is proportional to acceleration of the cask and the canister. Therefore, due to this fluid coupling, the cask and canister system couples through 3 types of forces, i.e., spring force, damping force and inertia force of the liquid. Equations of motion for the sliding motion are derived based on the fluid-structure coupling effects formulated by Fritz. Based on these equations of motion, nonlinear sliding motion of the cask-canister system is analyzed and the sliding suppression effects are investigated numerically. Furthermore, a fundamental test model of a cask-canister system is fabricated and the shaking table tests are conducted. From these analytical and test results, the sliding motion suppression effects due to fluid-structure coupling effects are investigated. As a result, it is confirmed that the inertia coupling effects due to water filled in the annular region are relatively large, and the

Development of regional growth centres and impact on regional growth: A case study of Thailand’s Northeastern region

Directory of Open Access Journals (Sweden)

Nattapon Sang-arun

2013-01-01

Full Text Available This study investigates the spatial economic structure and inequality in Thailand at the national and regional levels, with a particular focus on the Northeastern region in the period from 1987 to 2007. The study has three main points: 1 examination of the economic structure and inequality at the national level and in the Northeastern region according to the Theil index, 2 determination of regional growth centres and satellite towns by using growth pole theory as a conceptual framework and incorporating spatial interaction analysis and 3 analysis of the relationship between regional growth centres and satellite towns with regard to the impact on growth and inequality. The results show that the Northeastern region is definitely the lagging region in the nation, by both gross domestic product (GDP and gross regional product (GRP per capita. It was therefore selected for a case study. Spatial analysis identified Nakhon Ratchasima, Khon Kaen, Udon Thani and Ubon Ratchathani as regional growth centres. Each of them has its own sphere of influence (or satellite towns, and the total area of regional growth centres and satellite towns are classified as sub-regions. The development of regional growth centres has a direct impact on sub-regional economic growth through economic and social relationships: urbanisation, industrial development, per capita growth, the number of higher educational institutes and so on. However, such growth negatively correlates with economic equality among the provinces in a sub-region. The inequality trend is obviously on an upswing. This study suggests that industrial links between regional growth centres and their satellite towns should be improved in order for regional growth centre development to have a consistently desirable effect on both economic growth and equality. Such a strong process means that the growth of regional growth centres will spread, leading to the development of their surrounding areas.

Fuzzy interaction modelling for participants in innovation development: approaches and examples

Directory of Open Access Journals (Sweden)

CHERNOV Vladimir

2018-01-01

Full Text Available The article considers the interaction problems of the participants in innovative development at the regional level. Mathematical approaches and formulations for mode lling, such as the interaction on the basis of game approaches and the theory of fuzzy sets, have been proposed. In particular, the interaction model of innovative participants in the region, considered as a fuzzy coalition game, is presented. Its theoretical justification and an example of practical calculations are given. Further, the methodology of interaction modelling is considered , taking into account the motives of the participants in innovative development when forming fuzzy coalitions. An example of the corresponding calculations is also given. Also, the interaction model of "state-regions" in the interpretation of the fuzzy hierarchical game is proposed and described. The features of its solution are described and an example of calculations is presented.

Dissociating frontal regions that co-lateralize with different ventral occipitotemporal regions during word processing☆

Science.gov (United States)

Seghier, Mohamed L.; Price, Cathy J.

2013-01-01

The ventral occipitotemporal sulcus (vOT) sustains strong interactions with the inferior frontal cortex during word processing. Consequently, activation in both regions co-lateralize towards the same hemisphere in healthy subjects. Because the determinants of lateralisation differ across posterior, middle and anterior vOT subregions, we investigated whether lateralisation in different inferior frontal regions would co-vary with lateralisation in the three different vOT subregions. A whole brain analysis found that, during semantic decisions on written words, laterality covaried in (1) posterior vOT and the precentral gyrus; (2) middle vOT and the pars opercularis, pars triangularis, and supramarginal gyrus; and (3) anterior vOT and the pars orbitalis, middle frontal gyrus and thalamus. These findings increase the spatial resolution of our understanding of how vOT interacts with other brain areas during semantic categorisation on words. PMID:23728081

Monitoring the beam position in the SLC interaction region

International Nuclear Information System (INIS)

Denard, J.C.; Bowden, G.B.; Oxoby, G.J.; Pellegrin, J.L.; Ross, M.C.

1987-03-01

The Stanford Linear Collider requires special Beam Position Monitors near the Interaction Point (IP) to bring the two beams (e + and e - ) into collision. These beams pass through two monitors on each side of the IP with a short time separation (about 20 and 50 ns). The mechanics of the monitors as well as the electronics will be described. In order to bring beams of several microns diameter into collision at the IP, these monitors measure beam deflection induced by the presence of the opposite beam

Spectral fingerprints of large-scale neuronal interactions

NARCIS (Netherlands)

Siegel, M.; Donner, T.H.; Engel, A.K.

2012-01-01

Cognition results from interactions among functionally specialized but widely distributed brain regions; however, neuroscience has so far largely focused on characterizing the function of individual brain regions and neurons therein. Here we discuss recent studies that have instead investigated the

Monitoring the beam position in the SLC interaction region

Energy Technology Data Exchange (ETDEWEB)

Denard, J.C.; Bowden, G.B.; Oxoby, G.J.; Pellegrin, J.L.; Ross, M.C.

1987-03-01

The Stanford Linear Collider requires special Beam Position Monitors near the Interaction Point (IP) to bring the two beams (e/sup +/ and e/sup -/) into collision. These beams pass through two monitors on each side of the IP with a short time separation (about 20 and 50 ns). The mechanics of the monitors as well as the electronics will be described. In order to bring beams of several microns diameter into collision at the IP, these monitors measure beam deflection induced by the presence of the opposite beam.

Monitoring the beam position in the SLC interaction region

International Nuclear Information System (INIS)

Denard, J.C.; Bowden, G.B.; Oxoby, G.J.; Pellegrin, J.L.; Ross, M.C.

1987-01-01

The Stanford Linear Collider requires special Beam Position Monitors near the Interaction Point (IP) to bring the two beams (e/sup +/ and /sup e-/) into collision. These beams pass through two monitors on each side of the IP with a short time separation (about 20 and 50ns). The mechanics of the monitors as well as the electronics will be described. In order to bring beams of several microns diameter into collision at the IP, these monitors measure beam deflection induced by the presence of the opposite beam

Why are Trade Agreements Regional?

OpenAIRE

Zissimos, Ben

2007-01-01

This paper shows how distance may be used to coordinate on a unique equilibrium in which trade agreements are regional. Trade agreement formation is modeled as coalition formation. In a standard trade model with no distance between countries, a familiar problem of coordination failure arises giving rise to multiple equilibria; any one of many possible trade agreements can form. With distance between countries, and through strategic interaction in tariff setting, regional trade agreements gene...

Dynamic Soil-Structure-Interaction

DEFF Research Database (Denmark)

Kellezi, Lindita

1998-01-01

The aim of this thesis is to investigate and develop alternative methods of analyzing problems in dynamic soil-structure-interaction. The main focus is the major difficulty posed by such an analysis - the phenomenon of waves which radiate outward from the excited structures towards infinity....... In numerical calculations, only a finite region of the foundation metium is analyzed and something is done to prevent the outgoing radiating waves to reflect from the regions's boundary. The prosent work concerns itself with the study of such effects, using the finite element method, and artificial...... transmitting boundary at the edges of the computational mesh. To start with, an investigation of the main effects of the interaction phenomena is carried out employing a widely used model, considering dynamic stiffness of the unbounded soil as frequency independent. Then a complete description...

Quantifying wetland–aquifer interactions in a humid subtropical climate region: An integrated approach

Science.gov (United States)

Mendoza-Sanchez, Itza; Phanikumar, Mantha S.; Niu, Jie; Masoner, Jason R.; Cozzarelli, Isabelle M.; McGuire, Jennifer T.

2013-01-01

Wetlands are widely recognized as sentinels of global climate change. Long-term monitoring data combined with process-based modeling has the potential to shed light on key processes and how they change over time. This paper reports the development and application of a simple water balance model based on long-term climate, soil, vegetation and hydrological dynamics to quantify groundwater–surface water (GW–SW) interactions at the Norman landfill research site in Oklahoma, USA. Our integrated approach involved model evaluation by means of the following independent measurements: (a) groundwater inflow calculation using stable isotopes of oxygen and hydrogen (16O, 18O, 1H, 2H); (b) seepage flux measurements in the wetland hyporheic sediment; and (c) pan evaporation measurements on land and in the wetland. The integrated approach was useful for identifying the dominant hydrological processes at the site, including recharge and subsurface flows. Simulated recharge compared well with estimates obtained using isotope methods from previous studies and allowed us to identify specific annual signatures of this important process during the period of study (1997–2007). Similarly, observations of groundwater inflow and outflow rates to and from the wetland using seepage meters and isotope methods were found to be in good agreement with simulation results. Results indicate that subsurface flow components in the system are seasonal and readily respond to rainfall events. The wetland water balance is dominated by local groundwater inputs and regional groundwater flow contributes little to the overall water balance.

Improving the representation of river-groundwater interactions in land surface modeling at the regional scale: Observational evidence and parameterization applied in the Community Land Model

KAUST Repository

Zampieri, Matteo

2012-02-01

Groundwater is an important component of the hydrological cycle, included in many land surface models to provide a lower boundary condition for soil moisture, which in turn plays a key role in the land-vegetation-atmosphere interactions and the ecosystem dynamics. In regional-scale climate applications land surface models (LSMs) are commonly coupled to atmospheric models to close the surface energy, mass and carbon balance. LSMs in these applications are used to resolve the momentum, heat, water and carbon vertical fluxes, accounting for the effect of vegetation, soil type and other surface parameters, while lack of adequate resolution prevents using them to resolve horizontal sub-grid processes. Specifically, LSMs resolve the large-scale runoff production associated with infiltration excess and sub-grid groundwater convergence, but they neglect the effect from loosing streams to groundwater. Through the analysis of observed data of soil moisture obtained from the Oklahoma Mesoscale Network stations and land surface temperature derived from MODIS we provide evidence that the regional scale soil moisture and surface temperature patterns are affected by the rivers. This is demonstrated on the basis of simulations from a land surface model (i.e., Community Land Model - CLM, version 3.5). We show that the model cannot reproduce the features of the observed soil moisture and temperature spatial patterns that are related to the underlying mechanism of reinfiltration of river water to groundwater. Therefore, we implement a simple parameterization of this process in CLM showing the ability to reproduce the soil moisture and surface temperature spatial variabilities that relate to the river distribution at regional scale. The CLM with this new parameterization is used to evaluate impacts of the improved representation of river-groundwater interactions on the simulated water cycle parameters and the surface energy budget at the regional scale. © 2011 Elsevier B.V.

Study of quasiexclusive neutral meson production in pN interactions at E{sub p} = 70 GeV in the deep fragmentation region

Energy Technology Data Exchange (ETDEWEB)

Golovkin, S.V.; Kozhevnikov, A.P.; Kubarovsky, V.P. [Institute for High Energy Physics (IHEP), Protvino (Russian Federation)] [and others; SPHINX Collaboration (IHEP-ITEP)

1997-11-01

Quasiexclusive neutral meson production in pN-interactions is studied in experiments with the SPHINX facility operating in a proton beam from the IHEP accelerator (E{sub p}=70 GeV). The cross sections and the parameters of the differential distributions for {pi}{sup 0}, {omega}, {eta} and K{sup 0} production in the deep fragmentation region (x{sub F}>0.79/0.86) are presented. The results show that such proton quasiexclusive reactions with baryon exchange may be promising in searches for exotic mesons. (orig.) 20 refs.

Influenza NA and PB1 Gene Segments Interact during the Formation of Viral Progeny: Localization of the Binding Region within the PB1 Gene

Directory of Open Access Journals (Sweden)

Brad Gilbertson

2016-08-01

Full Text Available The influenza A virus genome comprises eight negative-sense viral RNAs (vRNAs that form individual ribonucleoprotein (RNP complexes. In order to incorporate a complete set of each of these vRNAs, the virus uses a selective packaging mechanism that facilitates co-packaging of specific gene segments but whose molecular basis is still not fully understood. Recently, we used a competitive transfection model where plasmids encoding the A/Puerto Rico/8/34 (PR8 and A/Udorn/307/72 (Udorn PB1 gene segments were competed to show that the Udorn PB1 gene segment is preferentially co-packaged into progeny virions with the Udorn NA gene segment. Here we created chimeric PB1 genes combining both Udorn and PR8 PB1 sequences to further define the location within the Udorn PB1 gene that drives co-segregation of these genes and show that nucleotides 1776–2070 of the PB1 gene are crucial for preferential selection. In vitro assays examining specific interactions between Udorn NA vRNA and purified vRNAs transcribed from chimeric PB1 genes also supported the importance of this region in the PB1-NA interaction. Hence, this work identifies an association between viral genes that are co-selected during packaging. It also reveals a region potentially important in the RNP-RNP interactions within the supramolecular complex that is predicted to form prior to budding to allow one of each segment to be packaged in the viral progeny. Our study lays the foundation to understand the co-selection of specific genes, which may be critical to the emergence of new viruses with pandemic potential.

Trends for Innovation Business Development in Lviv Region

OpenAIRE

Tetyana Skrypko

2014-01-01

The Articles highlights trends of small business innovation development at a regional level. Small business innovation structure has been analyzed for Lviv region; interactive procedures have been researched referring to cooperation between the parties interested in its development. The amount of innovation-active small businesses and the number of innovations introduced in Lviv region have been mentioned by innovation trends and types of economic activity. Up-to-date trends in Lviv region co...

Interacting Regional-Scale Regime Shifts for Biodiversity and Ecosystem Services

NARCIS (Netherlands)

Leadley, P.; Proenca, V.; Fernandez-Manjarres, J.; Pereira, H.M.; Alkemade, J.R.M.; Biggs, R.; Bruley, E.; Cheung, W.; Cooper, D.; Figueiredo, J.; Gilman, E.; Guenette, S.; Hurtt, G.; Mbow, C.; Oberdorff, T.; Revenga, C.; Scharlemann, J.P.W.; Scholes, R.; Smith, M.S.; Sumaila, U.R.; Walpole, M.

2014-01-01

Current trajectories of global change may lead to regime shifts at regional scales, driving coupled human-environment systems to highly degraded states in terms of biodiversity, ecosystem services, and human well-being. For business-as-usual socioeconomic development pathways, regime shifts are

GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site*

Science.gov (United States)

Lu, Shaoyong; Banerjee, Avik; Jang, Hyunbum; Zhang, Jian; Gaponenko, Vadim; Nussinov, Ruth

2015-01-01

K-Ras4B, a frequently mutated oncogene in cancer, plays an essential role in cell growth, differentiation, and survival. Its C-terminal membrane-associated hypervariable region (HVR) is required for full biological activity. In the active GTP-bound state, the HVR interacts with acidic plasma membrane (PM) headgroups, whereas the farnesyl anchors in the membrane; in the inactive GDP-bound state, the HVR may interact with both the PM and the catalytic domain at the effector binding region, obstructing signaling and nucleotide exchange. Here, using molecular dynamics simulations and NMR, we aim to figure out the effects of nucleotides (GTP and GDP) and frequent (G12C, G12D, G12V, G13D, and Q61H) and infrequent (E37K and R164Q) oncogenic mutations on full-length K-Ras4B. The mutations are away from or directly at the HVR switch I/effector binding site. Our results suggest that full-length wild-type GDP-bound K-Ras4B (K-Ras4BWT-GDP) is in an intrinsically autoinhibited state via tight HVR-catalytic domain interactions. The looser association in K-Ras4BWT-GTP may release the HVR. Some of the oncogenic mutations weaken the HVR-catalytic domain association in the K-Ras4B-GDP/-GTP bound states, which may facilitate the HVR disassociation in a nucleotide-independent manner, thereby up-regulating oncogenic Ras signaling. Thus, our results suggest that mutations can exert their effects in more than one way, abolishing GTP hydrolysis and facilitating effector binding. PMID:26453300

Structure of the human chromosome interaction network.

Directory of Open Access Journals (Sweden)

Sergio Sarnataro

Full Text Available New Hi-C technologies have revealed that chromosomes have a complex network of spatial contacts in the cell nucleus of higher organisms, whose organisation is only partially understood. Here, we investigate the structure of such a network in human GM12878 cells, to derive a large scale picture of nuclear architecture. We find that the intensity of intra-chromosomal interactions is power-law distributed. Inter-chromosomal interactions are two orders of magnitude weaker and exponentially distributed, yet they are not randomly arranged along the genomic sequence. Intra-chromosomal contacts broadly occur between epigenomically homologous regions, whereas inter-chromosomal contacts are especially associated with regions rich in highly expressed genes. Overall, genomic contacts in the nucleus appear to be structured as a network of networks where a set of strongly individual chromosomal units, as envisaged in the 'chromosomal territory' scenario derived from microscopy, interact with each other via on average weaker, yet far from random and functionally important interactions.

Monitoring methods and prediction of ground waters quality changes in the interaction region of Mine and Power Plant 'Belchatow'

International Nuclear Information System (INIS)

Soltyk, W.; Owczarczyk, A.; Walendziak, J.

2001-01-01

The Polish law regulations regarding the environmental waters (surface and ground) monitoring have been cited in the report. Also basic analytical methods for water quality control, commonly used in hydrogeology, and environment protection, have been described. All the presented methods have been used for investigations of the influence of Lignite Strip Mine 'Belchatow' on river water quality in the upper Warta basin, which are the main receivers of waters from the strip drainage system. The main physico-chemical features as well as micro and macro components and environmental isotope concentrations were measured in the surface and ground waters in the hypothetical strip interaction region. It has been found that the outfall of mine pumped waters to the Widawka river do not spoil water quality, which preserves the first class of purity in the course between Ruszczyn up to the Warta river. The forecast of the salinity increase for ground waters pumped by the protection barrier of salt deposit Debina have been worked out for water table altitude +50.0 m below the sea level (state in December 2000). The range of the wet ash deposit interaction on water quality pumped by the 'Belchatow' Mine drainage system have been determined and evaluated. (author)

The Disordered C-Terminus of Yeast Hsf1 Contains a Cryptic Low-Complexity Amyloidogenic Region

Directory of Open Access Journals (Sweden)

Jordi Pujols

2018-05-01

Full Text Available Response mechanisms to external stress rely on networks of proteins able to activate specific signaling pathways to ensure the maintenance of cell proteostasis. Many of the proteins mediating this kind of response contain intrinsically disordered regions, which lack a defined structure, but still are able to interact with a wide range of clients that modulate the protein function. Some of these interactions are mediated by specific short sequences embedded in the longer disordered regions. Because the physicochemical properties that promote functional and abnormal interactions are similar, it has been shown that, in globular proteins, aggregation-prone and binding regions tend to overlap. It could be that the same principle applies for disordered protein regions. In this context, we show here that a predicted low-complexity interacting region in the disordered C-terminus of the stress response master regulator heat shock factor 1 (Hsf1 protein corresponds to a cryptic amyloid region able to self-assemble into fibrillary structures resembling those found in neurodegenerative disorders.

The Disordered C-Terminus of Yeast Hsf1 Contains a Cryptic Low-Complexity Amyloidogenic Region.

Science.gov (United States)

Pujols, Jordi; Santos, Jaime; Pallarès, Irantzu; Ventura, Salvador

2018-05-06

Response mechanisms to external stress rely on networks of proteins able to activate specific signaling pathways to ensure the maintenance of cell proteostasis. Many of the proteins mediating this kind of response contain intrinsically disordered regions, which lack a defined structure, but still are able to interact with a wide range of clients that modulate the protein function. Some of these interactions are mediated by specific short sequences embedded in the longer disordered regions. Because the physicochemical properties that promote functional and abnormal interactions are similar, it has been shown that, in globular proteins, aggregation-prone and binding regions tend to overlap. It could be that the same principle applies for disordered protein regions. In this context, we show here that a predicted low-complexity interacting region in the disordered C-terminus of the stress response master regulator heat shock factor 1 (Hsf1) protein corresponds to a cryptic amyloid region able to self-assemble into fibrillary structures resembling those found in neurodegenerative disorders.

Spatial fingerprints of community structure in human interaction network for an extensive set of large-scale regions.

Science.gov (United States)

Kallus, Zsófia; Barankai, Norbert; Szüle, János; Vattay, Gábor

2015-01-01

Human interaction networks inferred from country-wide telephone activity recordings were recently used to redraw political maps by projecting their topological partitions into geographical space. The results showed remarkable spatial cohesiveness of the network communities and a significant overlap between the redrawn and the administrative borders. Here we present a similar analysis based on one of the most popular online social networks represented by the ties between more than 5.8 million of its geo-located users. The worldwide coverage of their measured activity allowed us to analyze the large-scale regional subgraphs of entire continents and an extensive set of examples for single countries. We present results for North and South America, Europe and Asia. In our analysis we used the well-established method of modularity clustering after an aggregation of the individual links into a weighted graph connecting equal-area geographical pixels. Our results show fingerprints of both of the opposing forces of dividing local conflicts and of uniting cross-cultural trends of globalization.

Interaction of Myosin Phosphatase Target Subunit (MYPT1) with Myosin Phosphatase-RhoA Interacting Protein (MRIP): A Role of Glutamic Acids in the Interaction.

Science.gov (United States)

Lee, Eunhee; Stafford, Walter F

2015-01-01

Scaffold proteins bind to and functionally link protein members of signaling pathways. Interaction of the scaffold proteins, myosin phosphatase target subunit (MYPT1) and myosin phosphatase-RhoA interacting protein (MRIP), causes co-localization of myosin phosphatase and RhoA to actomyosin. To examine biophysical properties of interaction of MYPT1 with MRIP, we employed analytical ultracentrifugation and surface plasmon resonance. In regard to MRIP, its residues 724-837 are sufficient for the MYPT1/MRIP interaction. Moreover, MRIP binds to MYPT1 as either a monomer or a dimer. With respect to MYPT1, its leucine repeat region, LR (residues 991-1030) is sufficient to account for the MYPT1/MRIP interaction. Furthermore, point mutations that replace glutamic acids 998-1000 within LR reduced the binding affinity toward MRIP. This suggests that the glutamic acids of MYPT1 play an important role in the interaction.

Multibaryon interactions at relativistic energies

International Nuclear Information System (INIS)

Baldin, A.M.

1978-01-01

The studies of interactions of high energy particles and nuclei with nuclei are summarised. One-particle distributions are mainly considered. A special attention is paid to the cumulative effect - the particle production in the region of limiting fragmentation of nuclei which is forbidden for one-nucleon collisions. A large amount of experimental information on multi-nucleon interactions has been obtained during the last two years: the range of an approximate validity of the limiting fragmentation of nuclei has been clarified; the universal energy dependence of cross sections in the cumulative region have been elucidated; data on angular distributions and polarization of the cumulative particles have been obtained; strong A-dependences have been observed in the cumulative effect; production of particles with large perpendicular momentum has been established on nuclei along with some dependences of the cumulative particle production on the quantum numbers in the production of hadron jets. The study of different manifestations of quark plasmons (fluctuons) in nuclei and multibaryon resonances predicted by quark models is an important and extensively developed trend of high energy physics. The possibility of studying the space-time picture of development of the strong interaction process by means of hadron-nucleus interaction and the particle formation length concept needs further theoretical and experimental grounds

Regional economic impact of oil spills

International Nuclear Information System (INIS)

Heen, K.; Andersen, M.

1994-01-01

An approach is demonstrated of coupling an environmental model to input-output analysis which aims to quantify the regional economic impact of an environmental accident. The model is implemented with the data of a potential oil spill interacting with the salmon aquaculture industry in Northern Norway. The production loss in salmon aquaculture and the regional income impact is computed and discussed. The approach used in this article could be a model for estimating the regional socio-economic impact of environmental factors like water and air pollution. 1 fig., 4 tabs., 19 refs

[The "Baltic Frontier" revisited. Power structures and gross-cultural interactions in the Baltic region. Proceedings of the international symposium in Florence, February 29th and March Ist, 2008] / Karsten Brüggemann

Index Scriptorium Estoniae

Brüggemann, Karsten, 1965-

2010-01-01

Arvustus: The "Baltic Frontier" revisited. Power structures and gross-cultural interactions in the Baltic region. Proceedings of the international symposium in Florence, February 29th and March Ist, 2008. Vienna, 2009

Cyclosporine suppression of lymphocyte recruitment, regional blood flow, and vascular permeability at sites of allogeneic cellular interactions

International Nuclear Information System (INIS)

Hanto, D.W.; Harty, J.T.; Hoffman, R.; Simmons, R.L.

1983-01-01

Although cyclosporine (CsA) has been thought to act primarily on the afferent phase of the immune response, we can demonstrate that it also acts at the efferent phase. The effect of CsA on lymphocyte recruitment (LR), regional blood flow (RBF), and vascular permeability (VP) was studied in paired, healed, subcutaneously placed urethane sponge grafts inoculated with specifically sensitized lymphocytes (SSLs) and allogeneic target cells. Intravenous injection of 111 In-labelled unsensitized lymphocytes, 86 RbCl and 125 I-labelled albumin were used to assess LR, RBF, and VP, respectively. Suspensions of SSL and targets in CsA at 10 and 1 microgram/ml prior to graft inoculation markedly reduce the preferential increase in LR to the site of interaction between SSLs and targets bearing the sensitizing alloantigen (P less than 0.002 for both). Similarly, CsA blocks the preferential increase in RBF (P . 0.017) and VP (P less than 0.002) to the graft site. These effects persist for at least 24 hours. If SSLs and targets are washed after incubation with CsA, LR is still reduced. These results are consistent with the idea that cell-bound CsA blocks the elaboration of lymphokines which results from the interaction between SSLs and specific alloantigen in vivo. These lymphokines increase RBF and VP and are accompanied by an increase in LR. Inhibition of these vascular effects may prevent the recruitment of additional lymphocytes to the graft site. CsA may, therefore, prevent or interrupt allograft rejection by blocking amplification of the rejection mechanism at the graft site

A COMPARATIVE STUDY OF KNOTS OF STAR FORMATION IN INTERACTING VERSUS SPIRAL GALAXIES

Energy Technology Data Exchange (ETDEWEB)

Smith, Beverly J.; Olmsted, Susan; Jones, Keith [Department of Physics and Astronomy, East Tennessee State University, Johnson City TN 37614 (United States); Zaragoza-Cardiel, Javier [Instituto de Astrofisica de Canarias, La Laguna, Tenerife (Spain); Struck, Curtis, E-mail: smithbj@etsu.edu [Department of Physics and Astronomy, Iowa State University, Ames IA 50011 (United States)

2016-03-15

Interacting galaxies are known to have higher global rates of star formation on average than normal galaxies, relative to their stellar masses. Using UV and IR photometry combined with new and published Hα images, we have compared the star formation rates (SFRs) of ∼700 star forming complexes in 46 nearby interacting galaxy pairs with those of regions in 39 normal spiral galaxies. The interacting galaxies have proportionally more regions with high SFRs than the spirals. The most extreme regions in the interacting systems lie at the intersections of spiral/tidal structures, where gas is expected to pile up and trigger star formation. Published Hubble Space Telescope images show unusually large and luminous star clusters in the highest luminosity regions. The SFRs of the clumps correlate with measures of the dust attenuation, consistent with the idea that regions with more interstellar gas have more star formation. For the clumps with the highest SFRs, the apparent dust attenuation is consistent with the Calzetti starburst dust attenuation law. This suggests that the high luminosity regions are dominated by a central group of young stars surrounded by a shell of clumpy interstellar gas. In contrast, the lower luminosity clumps are bright in the UV relative to Hα, suggesting either a high differential attenuation between the ionized gas and the stars, or a post-starburst population bright in the UV but faded in Hα. The fraction of the global light of the galaxies in the clumps is higher on average for the interacting galaxies than for the spirals. Thus either star formation in interacting galaxies is “clumpier” on average, or the star forming regions in interacting galaxies are more luminous, dustier, or younger on average.

The spin-orbit interaction in nuclei

International Nuclear Information System (INIS)

Skyrme, T.H.R.

1994-01-01

The analysis previously made of the average nuclear potential has been extended to consideration of the spin-orbit interactions. It has not been possible to find a satisfactory two-body interaction consistent with all the data; that suggested by the phase-shift analysis of nucleon-nucleon scattering is just within the region of possible forms. (author). 13 refs, 1 fig

Climate Risk and Vulnerability in the Caribbean and Gulf of Mexico Region: Interactions with Spatial Population and Land Cover Change

Science.gov (United States)

Chen, R. S.; Levy, M.; Baptista, S.; Adamo, S.

2010-12-01

Vulnerability to climate variability and change will depend on dynamic interactions between different aspects of climate, land-use change, and socioeconomic trends. Measurements and projections of these changes are difficult at the local scale but necessary for effective planning. New data sources and methods make it possible to assess land-use and socioeconomic changes that may affect future patterns of climate vulnerability. In this paper we report on new time series data sets that reveal trends in the spatial patterns of climate vulnerability in the Caribbean/Gulf of Mexico Region. Specifically, we examine spatial time series data for human population over the period 1990-2000, time series data on land use and land cover over 2000-2009, and infant mortality rates as a proxy for poverty for 2000-2008. We compare the spatial trends for these measures to the distribution of climate-related natural disaster risk hotspots (cyclones, floods, landslides, and droughts) in terms of frequency, mortality, and economic losses. We use these data to identify areas where climate vulnerability appears to be increasing and where it may be decreasing. Regions where trends and patterns are especially worrisome include coastal areas of Guatemala and Honduras.

WR 110: A SINGLE WOLF-RAYET STAR WITH COROTATING INTERACTION REGIONS IN ITS WIND?

International Nuclear Information System (INIS)

Chene, A.-N.; Moffat, A. F. J.; Fahed, R.; St-louis, N.; Muntean, V.; Chevrotiere, A. De La; Cameron, C.; Matthews, J. M.; Gamen, R. C.; Lefevre, L.; Rowe, J. F.; Guenther, D. B.; Kuschnig, R.; Weiss, W. W.; Rucinski, S. M.; Sasselov, D.

2011-01-01

A 30 day contiguous photometric run with the Microvariability and Oscillations of STars (MOST) satellite on the WN5-6b star WR 110 (HD 165688) reveals a fundamental periodicity of P = 4.08 ± 0.55 days along with a number of harmonics at periods P/n, with n ∼ 2, 3, 4, 5, and 6, and a few other possible stray periodicities and/or stochastic variability on timescales longer than about a day. Spectroscopic radial velocity studies fail to reveal any plausible companion with a period in this range. Therefore, we conjecture that the observed light-curve cusps of amplitude ∼0.01 mag that recur at a 4.08 day timescale may arise in the inner parts, or at the base, of a corotating interaction region (CIR) seen in emission as it rotates around with the star at constant angular velocity. The hard X-ray component seen in WR 110 could then be a result of a high velocity component of the CIR shock interacting with the ambient wind at several stellar radii. Given that most hot, luminous stars showing CIRs have two CIR arms, it is possible that either the fundamental period is 8.2 days or, more likely in the case of WR 110, there is indeed a second weaker CIR arm for P = 4.08 days, that occurs ∼two-thirds of a rotation period after the main CIR. If this interpretation is correct, WR 110 therefore joins the ranks with three other single WR stars, all WN, with confirmed CIR rotation periods (WR 1, WR 6, and WR 134), albeit with WR 110 having by far the lowest amplitude photometric modulation. This illustrates the power of being able to secure intense, continuous high-precision photometry from space-based platforms such as MOST. It also opens the door to revealing low-amplitude photometric variations in other WN stars, where previous attempts have failed. If all WN stars have CIRs at some level, this could be important for revealing sources of magnetism or pulsation in addition to rotation periods.

Coulomb interaction in the supermultiplet basis

International Nuclear Information System (INIS)

Ruzha, Ya.Kh.; Guseva, T.V.; Tamberg, Yu.Ya.; Vanagas, V.V.

1989-01-01

An approximate expression for the matrix elements of the Coulomb interaction operator in the supermultiplet basis has been derived with the account for the orbitally-nonsymmetric terms. From the general expression a simplified formula for the Coulomb interaction energy has been proposed. On the basis of the expression obtained the contribution of the Coulomb interaction to the framework of a strongly restricted dynamic model in the light (4≤A≤40) and heavy (158≤A≤196) nuclei region has been studied. 19 refs.; 4 tabs

DNA requirements for interaction of the C-terminal region of Ku80 with the DNA-dependent protein kinase catalytic subunit (DNA-PKcs).

Science.gov (United States)

Radhakrishnan, Sarvan Kumar; Lees-Miller, Susan P

2017-09-01

Non-homologous end joining (NHEJ) is the major pathway for the repair of ionizing radiation induced DNA double strand breaks (DSBs) in human cells. Critical to NHEJ is the DNA-dependent interaction of the Ku70/80 heterodimer with the DNA-dependent protein kinase catalytic subunit (DNA-PKcs) to form the DNA-PK holoenzyme. However, precisely how Ku recruits DNA-PKcs to DSBs ends to enhance its kinase activity has remained enigmatic, with contradictory findings reported in the literature. Here we address the role of the Ku80 C-terminal region (CTR) in the DNA-dependent interaction of Ku70/80 with DNA-PKcs using purified components and defined DNA structures. Our results show that the Ku80 CTR is required for interaction with DNA-PKcs on short segments of blunt ended 25bp dsDNA or 25bp dsDNA with a 15-base poly dA single stranded (ss) DNA extension, but this requirement is less stringent on longer dsDNA molecules (35bp blunt ended dsDNA) or 25bp duplex DNA with either a 15-base poly dT or poly dC ssDNA extension. Moreover, the DNA-PKcs-Ku complex preferentially forms on 25 bp DNA with a poly-pyrimidine ssDNA extension.Our work clarifies the role of the Ku80 CTR and dsDNA ends on the interaction of DNA-PKcs with Ku and provides key information to guide assembly and biology of NHEJ complexes. Copyright © 2017 Elsevier B.V. All rights reserved.

Interaction of bootstrap-current-driven magnetic islands

International Nuclear Information System (INIS)

Hegna, C.C.; Callen, J.D.

1991-10-01

The formation and interaction of fluctuating neoclassical pressure gradient driven magnetic islands is examined. The interaction of magnetic islands produces a stochastic region around the separatrices of the islands. This interaction causes the island pressure profile to be broadened, reducing the island bootstrap current and drive for the magnetic island. A model is presented that describes the magnetic topology as a bath of interacting magnetic islands with low to medium poloidal mode number (m congruent 3-30). The islands grow by the bootstrap current effect and damp due to the flattening of the pressure profile near the island separatrix caused by the interaction of the magnetic islands. The effect of this sporadic growth and decay of the islands (''magnetic bubbling'') is not normally addressed in theories of plasma transport due to magnetic fluctuations. The nature of the transport differs from statistical approaches to magnetic turbulence since the radial step size of the plasma transport is now given by the characteristic island width. This model suggests that tokamak experiments have relatively short-lived, coherent, long wavelength magnetic oscillations present in the steep pressure-gradient regions of the plasma. 42 refs

Scale Dependence of Land Atmosphere Interactions in Wet and Dry Regions as Simulated with NU-WRF over the Southwestern and Southeast US

Science.gov (United States)

Zhou, Yaping; Wu, Di; Lau, K.- M.; Tao, Wei-Kuo

2016-01-01

Large-scale forcing and land-atmosphere interactions on precipitation are investigated with NASA-Unified WRF (NU-WRF) simulations during fast transitions of ENSO phases from spring to early summer of 2010 and 2011. The model is found to capture major precipitation episodes in the 3-month simulations without resorting to nudging. However, the mean intensity of the simulated precipitation is underestimated by 46% and 57% compared with the observations in dry and wet regions in the southwestern and south-central United States, respectively. Sensitivity studies show that large-scale atmospheric forcing plays a major role in producing regional precipitation. A methodology to account for moisture contributions to individual precipitation events, as well as total precipitation, is presented under the same moisture budget framework. The analysis shows that the relative contributions of local evaporation and large-scale moisture convergence depend on the dry/wet regions and are a function of temporal and spatial scales. While the ratio of local and large-scale moisture contributions vary with domain size and weather system, evaporation provides a major moisture source in the dry region and during light rain events, which leads to greater sensitivity to soil moisture in the dry region and during light rain events. The feedback of land surface processes to large-scale forcing is well simulated, as indicated by changes in atmospheric circulation and moisture convergence. Overall, the results reveal an asymmetrical response of precipitation events to soil moisture, with higher sensitivity under dry than wet conditions. Drier soil moisture tends to suppress further existing below-normal precipitation conditions via a positive soil moisture-land surface flux feedback that could worsen drought conditions in the southwestern United States.

Measuring directional urban spatial interaction in China: A migration perspective.

Science.gov (United States)

Li, Fangzhou; Feng, Zhiming; Li, Peng; You, Zhen

2017-01-01

The study of urban spatial interaction is closely linked to that of economic geography, urban planning, regional development, and so on. Currently, this topic is generating a great deal of interest among researchers who are striving to find accurate ways to measure urban spatial interaction. Classical spatial interaction models lack theoretical guidance and require complicated parameter-adjusting processes. The radiation model, however, as proposed by Simini et al. with rigorous formula derivation, can simulate directional urban spatial interaction. We applied the radiation model in China to simulate the directional migration number among 337 nationwide research units, comprising 4 municipalities and 333 prefecture-level cities. We then analyzed the overall situation in Chinese cities, the interaction intensity hierarchy, and the prime urban agglomerations from the perspective of migration. This was done to ascertain China's urban spatial interaction and regional development from 2000 to 2010 to reveal ground realities.

Regional and seasonal analyses of weights in growing Angus cattle.

Science.gov (United States)

Bradford, H L; Fragomeni, B O; Bertrand, J K; Lourenco, D A L; Misztal, I

2016-10-01

This study evaluated the impact of region and season on growth in Angus seed stock. To assess geographic differences, the United States was partitioned into 9 regions based on similar climate and topography related to cow-calf production. Seasonal effects were associated with the month that animals were weighed. The American Angus Association provided growth data, and records were assigned to regions based on the owner's zip code. Most Angus cattle were in the Cornbelt, Lower Plains, Rocky Mountain, Upper Plains, and Upper South regions, with proportionally fewer Angus in Texas compared with the national cow herd. Most calves were born in the spring, especially February and March. Weaning weights (WW; = 49,886) and yearling weights (YW; = 45,168) were modeled with fixed effects of age-of-dam class (WW only), weigh month, region, month-region interaction, and linear covariate of age. Random effects included contemporary group nested within month-region combination and residual. The significant month-region interaction ( Angus seed stock producers have used calving seasons to adapt to the specific environmental conditions in their regions and to optimize growth in young animals.

GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site.

Science.gov (United States)

Lu, Shaoyong; Banerjee, Avik; Jang, Hyunbum; Zhang, Jian; Gaponenko, Vadim; Nussinov, Ruth

2015-11-27

K-Ras4B, a frequently mutated oncogene in cancer, plays an essential role in cell growth, differentiation, and survival. Its C-terminal membrane-associated hypervariable region (HVR) is required for full biological activity. In the active GTP-bound state, the HVR interacts with acidic plasma membrane (PM) headgroups, whereas the farnesyl anchors in the membrane; in the inactive GDP-bound state, the HVR may interact with both the PM and the catalytic domain at the effector binding region, obstructing signaling and nucleotide exchange. Here, using molecular dynamics simulations and NMR, we aim to figure out the effects of nucleotides (GTP and GDP) and frequent (G12C, G12D, G12V, G13D, and Q61H) and infrequent (E37K and R164Q) oncogenic mutations on full-length K-Ras4B. The mutations are away from or directly at the HVR switch I/effector binding site. Our results suggest that full-length wild-type GDP-bound K-Ras4B (K-Ras4B(WT)-GDP) is in an intrinsically autoinhibited state via tight HVR-catalytic domain interactions. The looser association in K-Ras4B(WT)-GTP may release the HVR. Some of the oncogenic mutations weaken the HVR-catalytic domain association in the K-Ras4B-GDP/-GTP bound states, which may facilitate the HVR disassociation in a nucleotide-independent manner, thereby up-regulating oncogenic Ras signaling. Thus, our results suggest that mutations can exert their effects in more than one way, abolishing GTP hydrolysis and facilitating effector binding. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Heliospheric MeV energization due to resonant interaction

International Nuclear Information System (INIS)

Roth, Ilan

2001-01-01

The prompt enhancement of relativistic electron flux during active geomagnetic periods, and the impulsive increase in the flux of the heliospheric energetic heavy ions during active solar periods are of major importance with respect to the proper operation of electronics on space-borne spacecraft and the safety of interplanetary human travel, respectively. Both enhancements may be caused by resonant wave-particle interaction with oblique electromagnetic waves on the terrestrial and coronal field lines. Whistler waves, which are enhanced significantly during substorms and which propagate obliquely to the magnetic field, can interact with energetic electrons through Landau, cyclotron, and higher harmonic resonant interactions when the Doppler-shifted wave frequency equals any (positive or negative) integer multiple of the local relativistic gyrofrequency. This interaction occurs over a broad spatial region when a relativistic electron is bouncing in the terrestrial magnetic field. Coronal ions interact selectively with electromagnetic ion-cyclotron (emic) waves which are correlated with impulsive flares. This interaction occurs over a small spatial region when the Doppler-shifted frequency matches the first or higher harmonic of the ion gyrofrequency. Recent new observations of terrestrial MeV X-rays are interpreted as a resonant loss of the radiation belt electrons

General theory of the long-range interactions in protein folding

International Nuclear Information System (INIS)

Namiot, V.A.; Batyanovskii, A.V.; Filatov, I.V.; Tumanyan, V.G.; Esipova, N.G.

2011-01-01

The process of the globular structure formation from a long molecular chain is examined in a general sense. In the course of this process various regions of the chain interact with each other. The bonds formed during this process are classified as native and non-native ones. Native bonds are formed in native globular structure. All other bonds are 'incorrect' (non-native). It is demonstrated that the globule formation can occur actually without production and subsequent decay of non-native contacts. The proposed model allows to avoid a search of numerous non-native variants since long-distance interactions with a high selectivity take place between the chain regions that form native bonds. The presence of these interactions prompts the chain regions which yield native contacts start to draw together and to interact. The databank data analysis shows that the developed model can be applied not only to the abstract structures but also to real polypeptide chains which are able to form both globular structures and helical fibrils. -- Highlights: → The process of the globular structure formation from a long molecular chain is examined. → It is shown that the globule formation can occur without production of non-native contacts. → The proposed model allows to avoid a search of non-native variants since long-distance interactions with a high selectivity. → This interaction takes place between the chain regions that form native bonds. → The databank data analysis shows that the developed model can be applied to real polypeptide chains.

Involvement of the carboxyl-terminal region of the yeast peroxisomal half ABC transporter Pxa2p in its interaction with Pxa1p and in transporter function.

Directory of Open Access Journals (Sweden)

Cheng-Yi Chuang

Full Text Available The peroxisome is a single membrane-bound organelle in eukaryotic cells involved in lipid metabolism, including β-oxidation of fatty acids. The human genetic disorder X-linked adrenoleukodystrophy (X-ALD is caused by mutations in the ABCD1 gene (encoding ALDP, a peroxisomal half ATP-binding cassette [ABC] transporter. This disease is characterized by defective peroxisomal β-oxidation and a large accumulation of very long-chain fatty acids in brain white matter, adrenal cortex, and testis. ALDP forms a homodimer proposed to be the functional transporter, whereas the peroxisomal transporter in yeast is a heterodimer comprising two half ABC transporters, Pxa1p and Pxa2p, both orthologs of human ALDP. While the carboxyl-terminal domain of ALDP is engaged in dimerization, it remains unknown whether the same region is involved in the interaction between Pxa1p and Pxa2p.Using a yeast two-hybrid assay, we found that the carboxyl-terminal region (CT of Pxa2p, but not of Pxa1p, is required for their interaction. Further analysis indicated that the central part of the CT (designated CT2 of Pxa2p was indispensable for its interaction with the carboxyl terminally truncated Pxa1_NBD. An interaction between the CT of Pxa2p and Pxa1_NBD was not detected, but could be identified in the presence of Pxa2_NBD-CT1. A single mutation of two conserved residues (aligned with X-ALD-associated mutations at the same positions in ALDP in the CT2 of the Pxa2_NBD-CT protein impaired its interaction with Pxa1_NBD or Pxa1_NBD-CT, resulting in a mutant protein that exhibited a proteinase K digestion profile different from that of the wild-type protein. Functional analysis of these mutant proteins on oleate plates indicated that they were defective in transporter function.The CT of Pxa2p is involved in its interaction with Pxa1p and in transporter function. This concept may be applied to human ALDP studies, helping to establish the pathological mechanism for CT-related X

Interaction networks and the use of floral resources by male orchid bees (Hymenoptera: Apidae: Euglossini in a primary rain forests of the Chocó Region (Colombia

Directory of Open Access Journals (Sweden)

Rodulfo Ospina-Torres

2015-09-01

Full Text Available Orchid bees are important keystone pollinators from the Neotropics. With the aim to study the relationships between orchid bees and their nectar and aromatic host species, we made systematic samplings of males across two conservation areas in the biogeographic Chocó Region of Colombia. We used chemical baits to collect 352 male bees during five months. The pollen attached to their bodies was extracted for palynological identification and to estimate interaction networks. The euglossine community consisted of at least 22 species including Eg. maculilabris, Eg. orellana, Eg. championiand Eg. ignita.The male bees were associated with 84 plants but depended on a small group of them (Peperomiaspp. and Anthuriumspp, as well as species of Solanaceae, Ericaceae and Malpighiaceae which were widely distributed across the altitudinal gradient, and were available through the year. The resulting interaction networks revealed a typical nested pattern usually found in plant-pollinator interactions, with several rare bee and plant species interaction with a small group of generalist bees and plant species. Albeit, we found variation within networks related to species composition. Such variation may be a consequence of specific differences in plant flowering phenology.

Interaction networks and the use of floral resources by male orchid bees (Hymenoptera: Apidae: Euglossini) in a primary rain forests of the Chocó Region (Colombia).

Science.gov (United States)

Ospina-Torres, Rodulfo; Montoya-Pfeiffer, Paula María; Parra-H, Alejandro; Solarte, Victor; Tupac Otero, Joel

2015-09-01

Orchid bees are important keystone pollinators from the Neotropics. With the aim to study the relationships between orchid bees and their nectar and aromatic host species, we made systematic samplings of males across two conservation areas in the biogeographic Choc6 Region of Colombia. We used chemical baits to collect 352 male bees during five months. The pollen attached to their bodies was extracted for palynological identification and to estimate interaction networks. The euglossine community consisted of at least 22 species including Eg. maculilabris, Eg. orellana, Eg. championi and Eg. ignita. The male bees were associated with 84 plants but depended on a small group of them (Peperomia spp. and Anthurium spp, as well as species of Solanaceae, Ericaceae and Malpighiaceae) which were widely distributed across the altitudinal gradient, and were available through the year. The resulting interaction networks revealed a typical nested pattern usually found in plant-pollinator interactions, with several rare bee and plant species interaction with a small group of generalist bees and plant species. Albeit, we found variation within networks related to species composition. Such variation may be a consequence of specific differences in plant flowering phenology.

Autonomy, Social Interactions and Culture

OpenAIRE

Marini, Annalisa; Navarra, Pietro

2016-01-01

The present paper, using a social interactions model, studies the impact of culture on autonomy of immigrants. The results suggest that: (i) immigrants' autonomy is largely influenced by the autonomy of individuals living in a host country; (ii) some immigrants are better off in countries and regions with better institutional environments. The results are robust to sensitivity checks. The contributions of the paper are as follows. First, we estimate a social interactions model that models bot...

Interaction with the Src homology (SH3-SH2) region of the Src-family kinase Hck structures the HIV-1 Nef dimer for kinase activation and effector recruitment.

Science.gov (United States)

Alvarado, John Jeff; Tarafdar, Sreya; Yeh, Joanne I; Smithgall, Thomas E

2014-10-10

HIV-1 Nef supports high titer viral replication in vivo and is essential for AIDS progression. Nef function depends on interactions with multiple host cell effectors, including Hck and other Src-family kinases. Here we describe the x-ray crystal structure of Nef in complex with the Hck SH3-SH2 regulatory region to a resolution of 1.86 Å. The complex crystallized as a dimer of complexes, with the conserved Nef PXXPXR motif engaging the Hck SH3 domain. A new intercomplex contact was found between SH3 Glu-93, and Nef Arg-105. Mutagenesis of Hck SH3 Glu-93 interfered with Nef·Hck complex formation and kinase activation in cells. The Hck SH2 domains impinge on the N-terminal region of Nef to stabilize a dimer conformation that exposes Asp-123, a residue critical for Nef function. Our results suggest that in addition to serving as a kinase effector for Nef, Hck binding may reorganize the Nef dimer for functional interaction with other signaling partners. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Interaction with the Src Homology (SH3-SH2) Region of the Src-family Kinase Hck Structures the HIV-1 Nef Dimer for Kinase Activation and Effector Recruitment*

Science.gov (United States)

Alvarado, John Jeff; Tarafdar, Sreya; Yeh, Joanne I.; Smithgall, Thomas E.

2014-01-01

HIV-1 Nef supports high titer viral replication in vivo and is essential for AIDS progression. Nef function depends on interactions with multiple host cell effectors, including Hck and other Src-family kinases. Here we describe the x-ray crystal structure of Nef in complex with the Hck SH3-SH2 regulatory region to a resolution of 1.86 Å. The complex crystallized as a dimer of complexes, with the conserved Nef PXXPXR motif engaging the Hck SH3 domain. A new intercomplex contact was found between SH3 Glu-93, and Nef Arg-105. Mutagenesis of Hck SH3 Glu-93 interfered with Nef·Hck complex formation and kinase activation in cells. The Hck SH2 domains impinge on the N-terminal region of Nef to stabilize a dimer conformation that exposes Asp-123, a residue critical for Nef function. Our results suggest that in addition to serving as a kinase effector for Nef, Hck binding may reorganize the Nef dimer for functional interaction with other signaling partners. PMID:25122770

Interactive effects of environmental change and management strategies on regional forest carbon emissions.

Science.gov (United States)

Hudiburg, Tara W; Luyssaert, Sebastiaan; Thornton, Peter E; Law, Beverly E

2013-11-19

Climate mitigation activities in forests need to be quantified in terms of the long-term effects on forest carbon stocks, accumulation, and emissions. The impacts of future environmental change and bioenergy harvests on regional forest carbon storage have not been quantified. We conducted a comprehensive modeling study and life-cycle assessment of the impacts of projected changes in climate, CO2 concentration, and N deposition, and region-wide forest management policies on regional forest carbon fluxes. By 2100, if current management strategies continue, then the warming and CO2 fertilization effect in the given projections result in a 32-68% increase in net carbon uptake, overshadowing increased carbon emissions from projected increases in fire activity and other forest disturbance factors. To test the response to new harvesting strategies, repeated thinnings were applied in areas susceptible to fire to reduce mortality, and two clear-cut rotations were applied in productive forests to provide biomass for wood products and bioenergy. The management strategies examined here lead to long-term increased carbon emissions over current harvesting practices, although semiarid regions contribute little to the increase. The harvest rates were unsustainable. This comprehensive approach could serve as a foundation for regional place-based assessments of management effects on future carbon sequestration by forests in other locations.

Limits on Interactions between Weakly Interacting Massive Particles and Nucleons Obtained with CsI(Tl) Crystal Detectors

International Nuclear Information System (INIS)

Lee, H. S.; Bhang, H. C.; Choi, J. H.; Kim, D. W.; Kim, S. C.; Kim, S. K.; Kwak, J. W.; Lee, J.; Lee, J. H.; Lee, M. J.; Lee, S. J.; Myung, S. S.; Ryu, S.; Dao, H.; Li, J.; Li, X.; Li, Y. J.; Yue, Q.; Zhu, J. J.; Hahn, I. S.

2007-01-01

The Korea Invisible Mass Search (KIMS) experiment presents new limits on the weakly interacting massive particle (WIMP)-nucleon cross section using data from an exposure of 3409 kg·d taken with low-background CsI(Tl) crystals at the Yangyang Underground Laboratory. The most stringent limit on the spin-dependent interaction for a pure proton case is obtained. The DAMA signal region for both spin-independent and spin-dependent interactions for the WIMP masses greater than 20 GeV/c 2 is excluded by the single experiment with crystal scintillators

Direct evidence of megamammal-carnivore interaction decoded from bone marks in historical fossil collections from the Pampean region

Directory of Open Access Journals (Sweden)

Karina Vanesa Chichkoyan

2017-05-01

Full Text Available Pleistocene South American megafauna has traditionally attracted the interest of scientists and the popular media alike. However, ecological interactions between the species that inhabited these ecosystems, such as predator-prey relationships or interspecific competition, are poorly known. To this regard, carnivore marks imprinted on the fossil bones of megamammal remains are very useful for deciphering biological activity and, hence, potential interspecific relationships among taxa. In this article, we study historical fossil collections housed in different European and Argentinean museums that were excavated during the 19th and early 20th centuries in the Pampean region, Argentina, in order to detect carnivore marks on bones of megamammals and provide crucial information on the ecological relationships between South American taxa during the Pleistocene. Our results indicate that the long bones of megafauna from the Pampean region (e.g., the Mylodontidae and Toxodontidae families exhibit carnivore marks. Furthermore, long bones of medium-sized species and indeterminate bones also present punctures, pits, scores and fractures. Members of the large-carnivore guild, such as ursids, canids and even felids, are recognised as the main agents that inflicted the marks. We hypothesize that the analysed carnivore marks represent the last stages of megaherbivore carcass exploitation, suggesting full consumption of these animals by the same or multiple taxa in a hunting and/or scavenging scenario. Moreover, our observations provide novel insights that help further our understanding of the palaeoecological relationships of these unique communities of megamammals.

Region specific changes in nonapeptide levels during client fish interactions with allopatric and sympatric cleaner fish.

Science.gov (United States)

Soares, Marta C; Cardoso, Sónia C; Mazzei, Renata; André, Gonçalo I; Morais, Marta; Gozdowska, Magdalena; Kalamarz-Kubiak, Hanna; Kulczykowska, Ewa

2017-01-01

Social relationships are crucially dependent on individual ability to learn and remember ecologically relevant cues. However, the way animals recognize cues before engaging in any social interaction and how their response is regulated by brain neuromodulators remains unclear. We examined the putative involvement of arginine vasotocin (AVT) and isotocin (IT), acting at different brain regions, during fish decision-making in the context of cooperation, by trying to identify how fish distinguish and recognize the value of other social partners or species. We hypothesized that the behavioural responses of cleaner fish clients to different social contexts would be underlain by changes in brain AVT and IT levels. We have found that changes in AVT at the level of forebrain and optic tectum are linked with a response to allopatric cleaners (novel or unfamiliar stimuli) while those at cerebellum are associated with the willingness to be cleaned (in response to sympatric cleaners). On the other hand, higher brain IT levels that were solely found in the diencephalon, also in response to allopatric cleaners. Our results are the first to implicate these nonapeptides, AVT in particular, in the assessment of social cues which enable fish to engage in mutualistic activities.

Network interactions within the canine intrinsic cardiac nervous system: implications for reflex control of regional cardiac function

Science.gov (United States)

Beaumont, Eric; Salavatian, Siamak; Southerland, E Marie; Vinet, Alain; Jacquemet, Vincent; Armour, J Andrew; Ardell, Jeffrey L

2013-01-01

The aims of the study were to determine how aggregates of intrinsic cardiac (IC) neurons transduce the cardiovascular milieu versus responding to changes in central neuronal drive and to determine IC network interactions subsequent to induced neural imbalances in the genesis of atrial fibrillation (AF). Activity from multiple IC neurons in the right atrial ganglionated plexus was recorded in eight anaesthetized canines using a 16-channel linear microelectrode array. Induced changes in IC neuronal activity were evaluated in response to: (1) focal cardiac mechanical distortion; (2) electrical activation of cervical vagi or stellate ganglia; (3) occlusion of the inferior vena cava or thoracic aorta; (4) transient ventricular ischaemia, and (5) neurally induced AF. Low level activity (ranging from 0 to 2.7 Hz) generated by 92 neurons was identified in basal states, activities that displayed functional interconnectivity. The majority (56%) of IC neurons so identified received indirect central inputs (vagus alone: 25%; stellate ganglion alone: 27%; both: 48%). Fifty per cent transduced the cardiac milieu responding to multimodal stressors applied to the great vessels or heart. Fifty per cent of IC neurons exhibited cardiac cycle periodicity, with activity occurring primarily in late diastole into isovolumetric contraction. Cardiac-related activity in IC neurons was primarily related to direct cardiac mechano-sensory inputs and indirect autonomic efferent inputs. In response to mediastinal nerve stimulation, most IC neurons became excessively activated; such network behaviour preceded and persisted throughout AF. It was concluded that stochastic interactions occur among IC local circuit neuronal populations in the control of regional cardiac function. Modulation of IC local circuit neuronal recruitment may represent a novel approach for the treatment of cardiac disease, including atrial arrhythmias. PMID:23818689

SU-C-BRA-01: Interactive Auto-Segmentation for Bowel in Online Adaptive MRI-Guided Radiation Therapy by Using a Multi-Region Labeling Algorithm

International Nuclear Information System (INIS)

Lu, Y; Chen, I; Kashani, R; Wan, H; Maughan, N; Muccigrosso, D; Parikh, P

2016-01-01

Purpose: In MRI-guided online adaptive radiation therapy, re-contouring of bowel is time-consuming and can impact the overall time of patients on table. The study aims to auto-segment bowel on volumetric MR images by using an interactive multi-region labeling algorithm. Methods: 5 Patients with locally advanced pancreatic cancer underwent fractionated radiotherapy (18–25 fractions each, total 118 fractions) on an MRI-guided radiation therapy system with a 0.35 Tesla magnet and three Co-60 sources. At each fraction, a volumetric MR image of the patient was acquired when the patient was in the treatment position. An interactive two-dimensional multi-region labeling technique based on graph cut solver was applied on several typical MRI images to segment the large bowel and small bowel, followed by a shape based contour interpolation for generating entire bowel contours along all image slices. The resulted contours were compared with the physician’s manual contouring by using metrics of Dice coefficient and Hausdorff distance. Results: Image data sets from the first 5 fractions of each patient were selected (total of 25 image data sets) for the segmentation test. The algorithm segmented the large and small bowel effectively and efficiently. All bowel segments were successfully identified, auto-contoured and matched with manual contours. The time cost by the algorithm for each image slice was within 30 seconds. For large bowel, the calculated Dice coefficients and Hausdorff distances (mean±std) were 0.77±0.07 and 13.13±5.01mm, respectively; for small bowel, the corresponding metrics were 0.73±0.08and 14.15±4.72mm, respectively. Conclusion: The preliminary results demonstrated the potential of the proposed algorithm in auto-segmenting large and small bowel on low field MRI images in MRI-guided adaptive radiation therapy. Further work will be focused on improving its segmentation accuracy and lessening human interaction.

SU-C-BRA-01: Interactive Auto-Segmentation for Bowel in Online Adaptive MRI-Guided Radiation Therapy by Using a Multi-Region Labeling Algorithm

Energy Technology Data Exchange (ETDEWEB)

Lu, Y; Chen, I; Kashani, R; Wan, H; Maughan, N; Muccigrosso, D; Parikh, P [Washington University School of Medicine, Saint Louis, MO (United States)

2016-06-15

Purpose: In MRI-guided online adaptive radiation therapy, re-contouring of bowel is time-consuming and can impact the overall time of patients on table. The study aims to auto-segment bowel on volumetric MR images by using an interactive multi-region labeling algorithm. Methods: 5 Patients with locally advanced pancreatic cancer underwent fractionated radiotherapy (18–25 fractions each, total 118 fractions) on an MRI-guided radiation therapy system with a 0.35 Tesla magnet and three Co-60 sources. At each fraction, a volumetric MR image of the patient was acquired when the patient was in the treatment position. An interactive two-dimensional multi-region labeling technique based on graph cut solver was applied on several typical MRI images to segment the large bowel and small bowel, followed by a shape based contour interpolation for generating entire bowel contours along all image slices. The resulted contours were compared with the physician’s manual contouring by using metrics of Dice coefficient and Hausdorff distance. Results: Image data sets from the first 5 fractions of each patient were selected (total of 25 image data sets) for the segmentation test. The algorithm segmented the large and small bowel effectively and efficiently. All bowel segments were successfully identified, auto-contoured and matched with manual contours. The time cost by the algorithm for each image slice was within 30 seconds. For large bowel, the calculated Dice coefficients and Hausdorff distances (mean±std) were 0.77±0.07 and 13.13±5.01mm, respectively; for small bowel, the corresponding metrics were 0.73±0.08and 14.15±4.72mm, respectively. Conclusion: The preliminary results demonstrated the potential of the proposed algorithm in auto-segmenting large and small bowel on low field MRI images in MRI-guided adaptive radiation therapy. Further work will be focused on improving its segmentation accuracy and lessening human interaction.

InterProSurf: a web server for predicting interacting sites on protein surfaces

Science.gov (United States)

Negi, Surendra S.; Schein, Catherine H.; Oezguen, Numan; Power, Trevor D.; Braun, Werner

2009-01-01

Summary A new web server, InterProSurf, predicts interacting amino acid residues in proteins that are most likely to interact with other proteins, given the 3D structures of subunits of a protein complex. The prediction method is based on solvent accessible surface area of residues in the isolated subunits, a propensity scale for interface residues and a clustering algorithm to identify surface regions with residues of high interface propensities. Here we illustrate the application of InterProSurf to determine which areas of Bacillus anthracis toxins and measles virus hemagglutinin protein interact with their respective cell surface receptors. The computationally predicted regions overlap with those regions previously identified as interface regions by sequence analysis and mutagenesis experiments. PMID:17933856

Ocean-Atmosphere Interactions Modulate Irrigation's Climate Impacts

Science.gov (United States)

Krakauer, Nir Y.; Puma, Michael J.; Cook, Benjamin I.; Gentine, Pierre; Nazarenko, Larissa

2016-01-01

Numerous studies have focused on the local and regional climate effects of irrigated agriculture and other land cover and land use change (LCLUC) phenomena, but there are few studies on the role of ocean- atmosphere interaction in modulating irrigation climate impacts. Here, we compare simulations with and without interactive sea surface temperatures of the equilibrium effect on climate of contemporary (year 2000) irrigation geographic extent and intensity. We find that ocean-atmosphere interaction does impact the magnitude of global-mean and spatially varying climate impacts, greatly increasing their global reach. Local climate effects in the irrigated regions remain broadly similar, while non-local effects, particularly over the oceans, tend to be larger. The interaction amplifies irrigation-driven standing wave patterns in the tropics and mid-latitudes in our simulations, approximately doubling the global-mean amplitude of surface temperature changes due to irrigation. The fractions of global area experiencing significant annual-mean surface air temperature and precipitation change also approximately double with ocean-atmosphere interaction. Subject to confirmation with other models, these findings imply that LCLUC is an important contributor to climate change even in remote areas such as the Southern Ocean, and that attribution studies should include interactive oceans and need to consider LCLUC, including irrigation, as a truly global forcing that affects climate and the water cycle over ocean as well as land areas.

Dorsolateral Prefrontal Cortex Drives Mesolimbic Dopaminergic Regions to Initiate Motivated Behavior

OpenAIRE

Ballard, Ian C.; Murty, Vishnu P.; Carter, R. McKell; MacInnes, Jeffrey J.; Huettel, Scott A.; Adcock, R. Alison

2011-01-01

How does the brain translate information signaling potential rewards into motivation to get them? Motivation to obtain reward is thought to depend on the midbrain, (particularly the ventral tegmental area, VTA), the nucleus accumbens (NAcc), and the dorsolateral prefrontal cortex (dlPFC), but it is not clear how the interactions amongst these regions relate to reward-motivated behavior. To study the influence of motivation on these reward-responsive regions and on their interactions, we used ...

Solar Wind 0.1-1 keV Electrons in the Corotating Interaction Regions

Science.gov (United States)

Wang, L.; Tao, J.; Li, G.; Wimmer-Schweingruber, R. F.; Jian, L. K.; He, J.; Tu, C.; Tian, H.; Bale, S. D.

2017-12-01

Here we present a statistical study of the 0.1-1 keV suprathermal electrons in the undisturbed and compressed slow/fast solar wind, for the 71 corotating interaction regions (CIRs) with good measurements from the WIND 3DP and MFI instruments from 1995 to 1997. For each of these CIRs, we separate the strahl and halo electrons based on their different behaviors in pitch angle distributions in the undisturbed and compressed solar wind. We fit both the strahl and halo energy spectra to a kappa function with an index κ index and effective temperature Teff, and calculate the pitch-angle width at half-maximum (PAHM) of the strahl population. We also integrate the electron measurements between 0.1 and 1.0 keV to obtain the number density n and average energy Eavg for the strahl and halo populations. We find that for both the strahl and halo populations within and around these CIRs, the fitted κ index strongly correlates with Teff, similar to the quiet-time solar wind (Tao et al., ApJ, 2016). The number density of both the strahl and halo shows a strong positive correlation with the electron core temperature. The strahl number density ns is correlated with the magnitude of interplanetary magnetic field, and the strahl PAHM width is anti-correlated with the solar wind speed. These results suggest that the origin of strahl electrons from the solar corona is likely related to the electron core temperature and magnetic field strength, while the production of halo electrons in the interplanetary medium could depend on the solar wind velocity.

Spatial fingerprints of community structure in human interaction network for an extensive set of large-scale regions.

Directory of Open Access Journals (Sweden)

Zsófia Kallus

Full Text Available Human interaction networks inferred from country-wide telephone activity recordings were recently used to redraw political maps by projecting their topological partitions into geographical space. The results showed remarkable spatial cohesiveness of the network communities and a significant overlap between the redrawn and the administrative borders. Here we present a similar analysis based on one of the most popular online social networks represented by the ties between more than 5.8 million of its geo-located users. The worldwide coverage of their measured activity allowed us to analyze the large-scale regional subgraphs of entire continents and an extensive set of examples for single countries. We present results for North and South America, Europe and Asia. In our analysis we used the well-established method of modularity clustering after an aggregation of the individual links into a weighted graph connecting equal-area geographical pixels. Our results show fingerprints of both of the opposing forces of dividing local conflicts and of uniting cross-cultural trends of globalization.

On the interaction of color charges

International Nuclear Information System (INIS)

Alekseev, A.I.; Arbuzov, B.A.

1985-01-01

Potential type solutions of the classical equations of Yang-Mills fields are obtained for the theory with the effective Lagrangian which has been formulated earlier in the framework of QCD with the account for the gluon self-interaction in the infrared region. When we consider the problem of the interaction between the colour source ad a probe colour charge, the chromoelectric solution gives the potential with the Coulomb behaviour at infinity

A zoological catalogue of hunted reptiles in the semiarid region of Brazil

Directory of Open Access Journals (Sweden)

Nóbrega Alves Rômulo

2012-07-01

Full Text Available Abstract The variety of interactions between human cultures and herpetofauna is the subject matter of Ethnoherpetology, a subdivision of Ethnozoology. In the semi-arid region of Brazil, many reptiles interact with human communities because of their utility or because of the risks they represent. These interactions have obvious implications for the conservation of reptiles from this region.In this context, ethnoherpetology studies are crucial because they serve as subsidies for guiding strategies for the handling and conservation of reptiles. This paper presents ethnozoological and taxonomic informations of hunted reptiles in the semiarid region of Brazil and analyse the implications on conservation that are related to the interactions between people and reptiles in this region. Taxonomic keys to identifying recorded reptiles are provided. Records of humans interacting with 38 reptile species that belong to 31 genuses and 16 families have been found. The groups with the largest numbers of recorded species were snakes (18 species, and this group was followed in number by lizards (13, chelonians (4, and crocodilians (3. The reptiles that were recorded may be used for the following purposes: medicinal purposes (24 species, food (13 species, ornamental or decorative purposes (11 species, in magical/religious practices (10 species, and as pets (10 species. Some species (n = 16 may have multiple uses. Furthermore, more than half of the species (n = 19 are commonly killed because they are considered potentially dangerous. Strategies for conserving the reptiles of the Brazilian semi-arid region must reconcile and integrate human and conservation needs.

A zoological catalogue of hunted reptiles in the semiarid region of Brazil.

Science.gov (United States)

Nóbrega Alves, Rômulo Romeu; Pereira Filho, Gentil Alves; Silva Vieira, Kleber; Silva Souto, Wedson Medeiros; Mendonça, Lívia Emanuelle Tavares; Montenegro, Paulofernandoguedespereira; Almeida, Waltécio de Oliveira; Silva Vieira, Washington Luiz

2012-07-30

The variety of interactions between human cultures and herpetofauna is the subject matter of Ethnoherpetology, a subdivision of Ethnozoology. In the semi-arid region of Brazil, many reptiles interact with human communities because of their utility or because of the risks they represent. These interactions have obvious implications for the conservation of reptiles from this region. In this context, ethnoherpetology studies are crucial because they serve as subsidies for guiding strategies for the handling and conservation of reptiles. This paper presents ethnozoological and taxonomic informations of hunted reptiles in the semiarid region of Brazil and analyse the implications on conservation that are related to the interactions between people and reptiles in this region. Taxonomic keys to identifying recorded reptiles are provided. Records of humans interacting with 38 reptile species that belong to 31 genuses and 16 families have been found. The groups with the largest numbers of recorded species were snakes (18 species), and this group was followed in number by lizards (13), chelonians (4), and crocodilians (3). The reptiles that were recorded may be used for the following purposes: medicinal purposes (24 species), food (13 species), ornamental or decorative purposes (11 species), in magical/religious practices (10 species), and as pets (10 species). Some species (n = 16) may have multiple uses. Furthermore, more than half of the species (n = 19) are commonly killed because they are considered potentially dangerous. Strategies for conserving the reptiles of the Brazilian semi-arid region must reconcile and integrate human and conservation needs.

Interaction between Cannabinoidergic System and H2 Receptors in CA1 Region upon Anxiety-like Behaviors in Hole-Board Test

Directory of Open Access Journals (Sweden)

M Nasehi

2012-05-01

Full Text Available

Background and Objectives: Cannabinoids produce a wide array of effects on different species and interact with different neurotransmitter systems in the brain. In the present study, the effects of histaminergic and cannabinoidregic systems as well as their interactions on anxiety-related behaviors were examined on mice. Methods: In this study, at first mice were anesthetized with intra-peritoneal injection of ketamine hydrochloride and xylazine. They were then placed in a stereotaxic apparatus. Two stainless-steel cannuale were placed one mm above CA1 regions of the dorsal hippocampus. After that, seventeen groups of animals were tested with hole board apparatus for measuring anxiety behavior. For the statistical analysis, One-way analysis of variance (ANOVA and Dunnett's test were used. Results: Intra-CA1 injection of WIN55,212-2 (0.1, 0.5µg/mice did not modify anxiety-related behaviors in mice. But administration of AM251 (25 and 50ng/mice, histamine or ranitidine (5µg/mice induced anxiogenic-like response. Also, co-administration of WIN55, 212-2 with histaminergic agents, decreased the anxiogenic-like response of histamine, but not that of ranitidine. Co-administration of an ineffective dose of AM251 with histaminergic drugs did not alter the response induced by these drugs. In all the experiments, locomotor activity was not significantly changed. Conclusion: These results showed that there may be a partial interaction between the cannabinoidergic and the histaminergic systems of the dorsal hippocampus on anxiety-like behaviors.

Interaction of the solar wind with comets: a Rosetta perspective.

Science.gov (United States)

Glassmeier, Karl-Heinz

2017-07-13

The Rosetta mission provides an unprecedented possibility to study the interaction of comets with the solar wind. As the spacecraft accompanies comet 67P/Churyumov-Gerasimenko from its very low-activity stage through its perihelion phase, the physics of mass loading is witnessed for various activity levels of the nucleus. While observations at other comets provided snapshots of the interaction region and its various plasma boundaries, Rosetta observations allow a detailed study of the temporal evolution of the innermost cometary magnetosphere. Owing to the short passage time of the solar wind through the interaction region, plasma instabilities such as ring--beam and non-gyrotropic instabilities are of less importance during the early life of the magnetosphere. Large-amplitude ultra-low-frequency (ULF) waves, the 'singing' of the comet, is probably due to a modified ion Weibel instability. This instability drives a cross-field current of implanted cometary ions unstable. The initial pick-up of these ions causes a major deflection of the solar wind protons. Proton deflection, cross-field current and the instability induce a threefold structure of the innermost interaction region with the characteristic Mach cone and Whistler wings as stationary interaction signatures as well as the ULF waves representing the dynamic aspect of the interaction.This article is part of the themed issue 'Cometary science after Rosetta'. © 2017 The Authors.

Interactive segmentation techniques algorithms and performance evaluation

CERN Document Server

He, Jia; Kuo, C-C Jay

2013-01-01

This book focuses on interactive segmentation techniques, which have been extensively studied in recent decades. Interactive segmentation emphasizes clear extraction of objects of interest, whose locations are roughly indicated by human interactions based on high level perception. This book will first introduce classic graph-cut segmentation algorithms and then discuss state-of-the-art techniques, including graph matching methods, region merging and label propagation, clustering methods, and segmentation methods based on edge detection. A comparative analysis of these methods will be provided

Entrepreneurship and Regional Development:

DEFF Research Database (Denmark)

Müller, Sabine

influenced by such interactions? In approaching these questions, this dissertation focuses on why entrepreneurs act (the causes of entrepreneurship, anchored in the context), how they act (the entrepreneurial practices, action, and activities), and what happens when they act (the outcomes and impact...... of entrepreneurship). This study sets out to obtain an in-depth understanding of the micro-, community-, and regional-level localized entrepreneurial processes as well as the way in which these processes are intertwined with the spatial context. The contribution of this dissertation lies in the illustration of how......, culture, history, and natural resources. The insights of this thesis are believed to be vital for understanding why certain types of local entrepreneurship prevail in certain regions. This can further our knowledge of how to foster and enable entrepreneurship in lagging regions. In addition, this study...

Tissue-specific interactions between nuclear proteins and the aminopeptidase N promoter

DEFF Research Database (Denmark)

Kärnström, U; Sjöström, H; Norén, O

1991-01-01

Aminopeptidase N/CD13 is a metallopeptidase found in many tissues. Aminopeptidase N activity is high in the small intestinal mucosa, moderate in the liver, and low in the spleen. Using DNase I footprinting and electrophoretic mobility shift assays with nuclear extracts from these tissues, three cis...... elements (DF, LF-B1, UF) were identified in the aminopeptidase N promoter. The DF region (-53 to -30) interacts with the ubiquitously expressed transcription factor Sp1. The LF-B1 region (-85 to -58) interacts with the liver transcription factor LF-B1 (HNF-1) which was detected as well in nuclei from small...... intestinal mucosa. The UF region (-112 to -90) interacts with nuclear factors which seem to be expressed differentially in the liver and the small intestine. Transfection of promoter deletions into HepG2 cells showed that the LF-B1 region is necessary for high expression of the aminopeptidase N gene in liver...

Policy Approach to Coordinated Regional Development

Institute of Scientific and Technical Information of China (English)

2007-01-01

<正>1. Introduction A "region" refers to a given area where the economic interrelation is close and the social interaction is frequent, which can be regarded as an economic community at different levels including local, national, and international. Here in this

Multiple parton interactions in photoproduction at HERA/H1

Energy Technology Data Exchange (ETDEWEB)

Magro, Lluis Marti

2009-02-15

Photoproduction data of HERA-I are analysed by requiring dijets with transverse momenta of at least 5 GeV. The two jets define in azimuth a towards region (leading jet), an away region (usually the 2nd jet) and transverse regions between them. The charged particle and jet with low transverse momentum multiplicity, so called minijets, are measured in these regions as a function of the variables x{sup obs}{sub {gamma}} and P{sup Jet{sub 1T}} (leading jet). The measurement is compared to predictions including parton showers and matrix elements at leading order in {alpha}{sub s}. Some predictions include contributions from multiple parton interactions and use different parton evolution equations. It was found that existing MC programs do not fully describe the measurements but the description can be improved by including multiple parton interactions. (orig.)

Impacts of regional land-grab on regional hydroclimate in southeastern Africa via modeling and remote sensing

Science.gov (United States)

Maksimowicz, M.; Masarik, M. T.; Brandt, J.; Flores, A. N.

2017-12-01

Land use/land cover (LULC) change directly impacts the partitioning of surface mass and energy fluxes. Regional-scale weather and climate are potentially altered by LULC if the resultant changes in partitioning of surface energy fluxes are significant enough to induce changes in the evolution of the planetary boundary layer and its interaction with the atmosphere above. Dynamics of land use, particularly those related to the social dimensions of the Earth System, are often simplified or not represented in regional land-atmosphere models or Earth System Models. This study explores the role of LULC change on a regional hydroclimate system, focusing on potential hydroclimate changes arising from timber harvesting due to a land grab boom in Mozambique. We also focus more narrowly at quantifying regional impacts on Gorongosa National Park, a nationally important economic and biodiversity resource in southeastern Africa. After nationalizing all land in 1975 after Mozambique gained independence, complex social processes, including an extended low intensity conflict civil war and economic hardships, led to an escalation of land use rights grants to foreign governments. Between 2004 and 2009, large tracts of land were requested for timber. Here we use existing tree cover loss datasets to more accurately represent land cover within a regional weather model. LULC in a region encompassing Gorongosa is updated at three instances between 2001 and 2014 using a tree cover loss dataset. We use these derived LULC datasets to inform lower boundary conditions in the Weather Research and Forecasting (WRF) model. To quantify potential hydrometeorological changes arising from land use change, we performed a factorial-like experiment by mixing input LULC maps and atmospheric forcing data from before, during, and after the land grab. Results suggest that the land grab has impacted microclimate parameters in a significant way via direct and indirect impacts on land-atmosphere interactions

Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces.

Directory of Open Access Journals (Sweden)

Ching-Tai Chen

Full Text Available Protein-protein interactions are key to many biological processes. Computational methodologies devised to predict protein-protein interaction (PPI sites on protein surfaces are important tools in providing insights into the biological functions of proteins and in developing therapeutics targeting the protein-protein interaction sites. One of the general features of PPI sites is that the core regions from the two interacting protein surfaces are complementary to each other, similar to the interior of proteins in packing density and in the physicochemical nature of the amino acid composition. In this work, we simulated the physicochemical complementarities by constructing three-dimensional probability density maps of non-covalent interacting atoms on the protein surfaces. The interacting probabilities were derived from the interior of known structures. Machine learning algorithms were applied to learn the characteristic patterns of the probability density maps specific to the PPI sites. The trained predictors for PPI sites were cross-validated with the training cases (consisting of 432 proteins and were tested on an independent dataset (consisting of 142 proteins. The residue-based Matthews correlation coefficient for the independent test set was 0.423; the accuracy, precision, sensitivity, specificity were 0.753, 0.519, 0.677, and 0.779 respectively. The benchmark results indicate that the optimized machine learning models are among the best predictors in identifying PPI sites on protein surfaces. In particular, the PPI site prediction accuracy increases with increasing size of the PPI site and with increasing hydrophobicity in amino acid composition of the PPI interface; the core interface regions are more likely to be recognized with high prediction confidence. The results indicate that the physicochemical complementarity patterns on protein surfaces are important determinants in PPIs, and a substantial portion of the PPI sites can be predicted

Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces

Science.gov (United States)

Chen, Ching-Tai; Peng, Hung-Pin; Jian, Jhih-Wei; Tsai, Keng-Chang; Chang, Jeng-Yih; Yang, Ei-Wen; Chen, Jun-Bo; Ho, Shinn-Ying; Hsu, Wen-Lian; Yang, An-Suei

2012-01-01

Protein-protein interactions are key to many biological processes. Computational methodologies devised to predict protein-protein interaction (PPI) sites on protein surfaces are important tools in providing insights into the biological functions of proteins and in developing therapeutics targeting the protein-protein interaction sites. One of the general features of PPI sites is that the core regions from the two interacting protein surfaces are complementary to each other, similar to the interior of proteins in packing density and in the physicochemical nature of the amino acid composition. In this work, we simulated the physicochemical complementarities by constructing three-dimensional probability density maps of non-covalent interacting atoms on the protein surfaces. The interacting probabilities were derived from the interior of known structures. Machine learning algorithms were applied to learn the characteristic patterns of the probability density maps specific to the PPI sites. The trained predictors for PPI sites were cross-validated with the training cases (consisting of 432 proteins) and were tested on an independent dataset (consisting of 142 proteins). The residue-based Matthews correlation coefficient for the independent test set was 0.423; the accuracy, precision, sensitivity, specificity were 0.753, 0.519, 0.677, and 0.779 respectively. The benchmark results indicate that the optimized machine learning models are among the best predictors in identifying PPI sites on protein surfaces. In particular, the PPI site prediction accuracy increases with increasing size of the PPI site and with increasing hydrophobicity in amino acid composition of the PPI interface; the core interface regions are more likely to be recognized with high prediction confidence. The results indicate that the physicochemical complementarity patterns on protein surfaces are important determinants in PPIs, and a substantial portion of the PPI sites can be predicted correctly with

Explaining the Allocation of Regional Structural Funds

DEFF Research Database (Denmark)

Charron, Nicholas

2016-01-01

What regional factors can explain the heterogeneity in Structural Funds distribution to European Union regions? Past studies have shown that aside from the level of economic development and rates of unemployment, other political, and economic factors systematically explain why certain European...... Union regions receive greater funding than others, in particular where there is room for bargaining. In this article, a novel theory is posited which argues that the determination of Structural Funds is based on an interaction between a region’s formal institutions (the level of a regional autonomy......) and informal institutions (its level of quality of government). In cases of low regional autonomy, member states and European Union level actors prefer to allocate greater levels of Funds to regions with lower quality of government in order to increase cohesion. Yet in cases of high regional autonomy, risks...

Coulomb-interacting billiards in circular cavities

International Nuclear Information System (INIS)

Solanpää, J; Räsänen, E; Nokelainen, J; Luukko, P J J

2013-01-01

We apply a molecular dynamics scheme to analyze classically chaotic properties of a two-dimensional circular billiard system containing two Coulomb-interacting electrons. As such, the system resembles a prototype model for a semiconductor quantum dot. The interaction strength is varied from the noninteracting limit with zero potential energy up to the strongly interacting regime where the relative kinetic energy approaches zero. At weak interactions the bouncing maps show jumps between quasi-regular orbits. In the strong-interaction limit we find an analytic expression for the bouncing map. Its validity in the general case is assessed by comparison with our numerical data. To obtain a more quantitative view on the dynamics as the interaction strength is varied, we compute and analyze the escape rates of the system. Apart from very weak or strong interactions, the escape rates show consistently exponential behavior, thus suggesting strongly chaotic dynamics and a phase space without significant sticky regions within the considered time scales. (paper)

Regional Community and International Relations: the Volgograd Region Experience

Directory of Open Access Journals (Sweden)

Danakari Richard A.

2016-06-01

Full Text Available The article deals with the complex and controversial problems of the new regional communities’ formation and the impact of the interethnic relations sphere on them. The author notes that the processes of interaction between representatives of different cultures and civilizations, ethnic groups and religions have become increasingly controversial and tense in the context of continuous social dynamics. Similarly to the Russian society as a whole, regional communities are in a state of transitivity. They get transformed, they acquire new qualities such as multicasting and heterogeneity, multi-ethnicity and multi-confessionalism, fragmentarity and multiculturality. This fact increases the risks and uncertainties, problematizes future prospects. National non-governmental organizations are increasingly positioning themselves as civil society institutions at the present stage of social development at the regional level. They perform a difficult dual task: on the one hand, they ensure the preservation and development of history, native language, culture, ethnic traditions, and on the other hand, they work on the integration, on the common identity and the Russian nation formation. On the territory of the Volgograd region, largely due to the active cooperation of regional authorities and local authorities with national public associations, international and inter-confessional relations are stable. The basis of such activity is respect for history, native language, culture, tradition, religion, national dignity of all people in the region, regardless of their belonging to a certain ethnic group or religion. Over two decades of accumulated considerable experience of joint inter-ethnic dialogue and cooperation, provided tolerance and peace, harmony and mutual understanding between people of different ethnicities and religions in the country.

Central and peripheral interactions of hadrons

Energy Technology Data Exchange (ETDEWEB)

Dremin, I.M. [Lebedev Physics Institute, Moscow (Russian Federation); National Research Nuclear University ' ' MEPhI' ' , Moscow (Russian Federation); Nechitailo, V.A. [Lebedev Physics Institute, Moscow (Russian Federation); White, S.N. [CERN, Geneva (Switzerland)

2017-12-15

Surprisingly enough, the ratio of elastic to inelastic cross sections of proton interactions increases with energy in the interval corresponding to ISR→LHC (i.e. from 10 to 10{sup 4} GeV). That leads to special features of their spatial interaction region at these and higher energies. Within the framework of some phenomenological models, we show how the particular ranges of the transferred momenta measured in elastic scattering experiments expose the spatial features of the inelastic interaction region according to the unitarity condition. The difference between their predictions at higher energies is discussed. The notion of central and peripheral collisions of hadrons is treated in terms of the impact-parameter description. It is shown that the shape of the differential cross section in the diffraction cone is mostly determined by collisions with intermediate impact parameters. Elastic scattering at very small transferred momenta is sensitive to peripheral processes with large impact parameters. The role of central collisions in the formation of the diffraction cone is less significant. (orig.)

Weak-interaction rates in stellar conditions

Science.gov (United States)

Sarriguren, Pedro

2018-05-01

Weak-interaction rates, including β-decay and electron captures, are studied in several mass regions at various densities and temperatures of astrophysical interest. In particular, we study odd-A nuclei in the pf-shell region, which are involved in presupernova formations. Weak rates are relevant to understand the late stages of the stellar evolution, as well as the nucleosynthesis of heavy nuclei. The nuclear structure involved in the weak processes is studied within a quasiparticle proton-neutron random-phase approximation with residual interactions in both particle-hole and particle-particle channels on top of a deformed Skyrme Hartree-Fock mean field with pairing correlations. First, the energy distributions of the Gamow-Teller strength are discussed and compared with the available experimental information, measured under terrestrial conditions from charge-exchange reactions. Then, the sensitivity of the weak-interaction rates to both astrophysical densities and temperatures is studied. Special attention is paid to the relative contribution to these rates of thermally populated excited states in the decaying nucleus and to the electron captures from the degenerate electron plasma.

Photometric observations of local rocket-atmosphere interactions

Science.gov (United States)

Greer, R. G. H.; Murtagh, D. P.; Witt, G.; Stegman, J.

1983-06-01

Photometric measurements from rocket flights which recorded a strong foreign luminance in the altitude region between 90 and 130 km are reported. From one Nike-Orion rocket the luminance appeared on both up-leg and down-leg; from a series of Petrel rockets the luminance was apparent only on the down-leg. The data suggest that the luminance may be distributed mainly in the wake region along the rocket trajectory. The luminance is believed to be due to a local interaction between the rocket and the atmosphere although the precise nature of the interaction is unknown. It was measured at wavelengths ranging from 275 nm to 1.61 microns and may be caused by a combination of reactions.

Geotourizm marketing in Lake Constance’ region

Directory of Open Access Journals (Sweden)

Daniel Gerner

2009-09-01

Full Text Available Aim of this work is to evaluate factors responsible for these developments and to show chances for other regions by adopting thismarketing strategy. Besides marketing, interaction of tourism, industry and state was important. Many reasons can be found that shouldresult in a worse development of the region around the Lake of Constance . But instead, today this region has a higher populationgrowth than the average of Baden-Württemberg and is the best economic region outside of urban centers. Scientists spoke aboutan overheated economic growth during the last years that in 2008 comes to a normal but still high level. To attract high potentialworkers and engineers to support further growth, the region has one main advantage to many other regions – its environment. In caseof “Lake of Constance” region, different marketing strategies were used. The complexity of successful marketing for a region is highand finding the right combination of marketing strategies is difficult but can positively influence the development of a region, itseconomy and tourism. At the same time, the marketing for economy and tourism positively reflects degree of popularity in the region.

Regional Highlights of Climate Change

Science.gov (United States)

David L. Peterson; J.M. Wolken; Teresa Hollingsworth; Christian Giardina; J.S. Littell; Linda Joyce; Chris Swanston; Stephen Handler; Lindsey Rustad; Steve McNulty

2014-01-01

Climatic extremes, ecological disturbance, and their interactions are expected to have major effects on ecosystems and social systems in most regions of the United States in the coming decades. In Alaska, where the largest temperature increases have occurred, permafrost is melting, carbon is being released, and fire regimes are changing, leading to a...

Nucleon-deuteron breakup quantities calculated with separable interactions including tensor forces and P-wave interactions

International Nuclear Information System (INIS)

Bruinsma, J.; Wageningen, R. van

1977-01-01

Nucleon-deuteron breakup calculations at a nucleon bombarding energy of 22.7 MeV have been performed with separable interactions including a tensor force and P-wave interactions. Differential cross sections and a selection of polarization quantities have been computed for special regions of the phase space. The influence of a tensor force and P-wave interactions on the differential cross section is of the order of 20%. Large discrepancies between theory and experiment occur for the vector analyzing powers, both for the kinematically complete and for the incomplete situation. The calculations show that there are kinematical situations in which the differential cross sections and the tensor analyzing powers are sufficiently large to make measurements feasible. (Auth.)

Epistatic interactions on chromosome 14 influencing stillbirth in Fleckvieh cattle

Directory of Open Access Journals (Sweden)

Gábor Mészáros

2016-09-01

Full Text Available Single nucleotide polymorphism (SNP data of 7384 Fleckvieh bulls was analyzed to identify epistatic interactions influencing stillbirth. Deregressed breeding values were used as phenotypes. The epistatic effects were identified as significant interaction terms from pairwise linear regressions performed for each SNP after accounting for multiple testing. Majority of the detected epistatic effects were located in the 9-31Mb region of chromosome 14, corresponding to the most significant region from the genome wide association. Additional epistatic SNPs at 50.5Mb and 80.5 Mb at the same chromosome were detected. The region around 25 Mb contained genes connected to height and body size such as PLAG1, CHCHD7, LYN, RDHE2 (SDR16C5 and PENK. The other interesting region at 50.5Mb contained the TRPS1 gene influencing bone malformations. Both regions have been identified as candidates influencing stillbirth.

Quasi-Simultaneous Viscous-Inviscid Interaction for Transonic Airfoil Flow

NARCIS (Netherlands)

Veldman, Arthur E.P.

2005-01-01

Following Prandtl, a viscous-inviscid interaction (VII) method is presented, where the flow field is divided into a viscous shear layer and an inviscid outer region. Their coupling is performed with the quasi-simultaneous approach, making use of an appropriately chosen interaction law. Firstly, an

PCNA Structure and Interactions with Partner Proteins

KAUST Repository

Oke, Muse; Zaher, Manal S.; Hamdan, Samir

2018-01-01

Proliferating cell nuclear antigen (PCNA) consists of three identical monomers that topologically encircle double-stranded DNA. PCNA stimulates the processivity of DNA polymerase δ and, to a less extent, the intrinsically highly processive DNA polymerase ε. It also functions as a platform that recruits and coordinates the activities of a large number of DNA processing proteins. Emerging structural and biochemical studies suggest that the nature of PCNA-partner proteins interactions is complex. A hydrophobic groove at the front side of PCNA serves as a primary docking site for the consensus PIP box motifs present in many PCNA-binding partners. Sequences that immediately flank the PIP box motif or regions that are distant from it could also interact with the hydrophobic groove and other regions of PCNA. Posttranslational modifications on the backside of PCNA could add another dimension to its interaction with partner proteins. An encounter of PCNA with different DNA structures might also be involved in coordinating its interactions. Finally, the ability of PCNA to bind up to three proteins while topologically linked to DNA suggests that it would be a versatile toolbox in many different DNA processing reactions.

PCNA Structure and Interactions with Partner Proteins

KAUST Repository

Oke, Muse

2018-01-29

Proliferating cell nuclear antigen (PCNA) consists of three identical monomers that topologically encircle double-stranded DNA. PCNA stimulates the processivity of DNA polymerase δ and, to a less extent, the intrinsically highly processive DNA polymerase ε. It also functions as a platform that recruits and coordinates the activities of a large number of DNA processing proteins. Emerging structural and biochemical studies suggest that the nature of PCNA-partner proteins interactions is complex. A hydrophobic groove at the front side of PCNA serves as a primary docking site for the consensus PIP box motifs present in many PCNA-binding partners. Sequences that immediately flank the PIP box motif or regions that are distant from it could also interact with the hydrophobic groove and other regions of PCNA. Posttranslational modifications on the backside of PCNA could add another dimension to its interaction with partner proteins. An encounter of PCNA with different DNA structures might also be involved in coordinating its interactions. Finally, the ability of PCNA to bind up to three proteins while topologically linked to DNA suggests that it would be a versatile toolbox in many different DNA processing reactions.

Bulk viscosity, interaction and the viability of phantom solutions

Energy Technology Data Exchange (ETDEWEB)

Leyva, Yoelsy; Sepulveda, Mirko [Universidad de Tarapaca, Departamento de Fisica, Facultad de Ciencias, Arica (Chile)

2017-06-15

We study the dynamics of a bulk viscosity model in the Eckart approach for a spatially flat Friedmann-Robertson-Walker (FRW) Universe. We have included radiation and dark energy, assumed as perfect fluids, and dark matter treated as an imperfect fluid having bulk viscosity. We also introduce an interaction term between the dark matter and dark energy components. Considering that the bulk viscosity is proportional to the dark matter energy density and imposing a complete cosmological dynamics, we find bounds on the bulk viscosity in order to reproduce a matter-dominated era (MDE). This constraint is independent of the interaction term. Some late time phantom solutions are mathematically possible. However, the constraint imposed by a MDE restricts the interaction parameter, in the phantom solutions, to a region consistent with a null value, eliminating the possibility of late time stable solutions with w < -1. From the different cases that we study, the only possible scenario, with bulk viscosity and interaction term, belongs to the quintessence region. In the latter case, we find bounds on the interaction parameter compatible with latest observational data. (orig.)

The circumnuclear environment of nearby non-interacting Seyfert galaxies

International Nuclear Information System (INIS)

Pogge, R.W.

1988-01-01

An investigation into the physical conditions prevailing in the regions immediately surrounding the active nuclei in 20 nearby, non-interacting Seyfert galaxies is reported. CCD interference-band images isolating the bright emission lines of Hα + [N II] λλ6548, 6583 and [O III] λ5007 have been obtained to search for spatially extended circumnuclear emission regions. Long-slit, low resolution spectrophotometry of interesting cases was used to probe the ionization state of the extended emission regions. For comparison, a CCD Hα + [N II] interference-band imaging survey of a statistically significant sample of 91 bright non-Seyfert spiral galaxies meeting the same non-interaction criteria has been carried out. Only three out of nine Seyfert 1s have spatially extended ionized gas regions compared with eight out of eleven Seyfert 2s. Enhanced circumnuclear star formation is uncommon to both Seyfert 1s and 2s. Extended emission in Seyfert 1s has essentially the same morphology in both Hα + [N II] and [O III] emission. In the Seyfert 2s, the Hα + [N II] and [O III] images show different extended emission morphologies. The [O III] emission regions appear as either one- or two-sided structures, four of which are resolved into two distinct cones of high-ionization gas emanating from the active nucleus. The morphology and ionization of these regions suggest collimation of the nuclear ionizing radiation field. The 91 non-interacting non-Seyfert spiral galaxies exhibit a rich variety of nuclear and circumnuclear emission-line structures ranging from no emission detected to bright stellar nuclei with complicated circumnuclear emission regions extending for many kiloparsecs

Region effects influence local tree species diversity.

Science.gov (United States)

Ricklefs, Robert E; He, Fangliang

2016-01-19

Global patterns of biodiversity reflect both regional and local processes, but the relative importance of local ecological limits to species coexistence, as influenced by the physical environment, in contrast to regional processes including species production, dispersal, and extinction, is poorly understood. Failure to distinguish regional influences from local effects has been due, in part, to sampling limitations at small scales, environmental heterogeneity within local or regional samples, and incomplete geographic sampling of species. Here, we use a global dataset comprising 47 forest plots to demonstrate significant region effects on diversity, beyond the influence of local climate, which together explain more than 92% of the global variation in local forest tree species richness. Significant region effects imply that large-scale processes shaping the regional diversity of forest trees exert influence down to the local scale, where they interact with local processes to determine the number of coexisting species.

Self-interacting spin-2 dark matter

Science.gov (United States)

Chu, Xiaoyong; Garcia-Cely, Camilo

2017-11-01

Recent developments in bigravity allow one to construct consistent theories of interacting spin-2 particles that are free of ghosts. In this framework, we propose an elementary spin-2 dark matter candidate with a mass well below the TeV scale. We show that, in a certain regime where the interactions induced by the spin-2 fields do not lead to large departures from the predictions of general relativity, such a light dark matter particle typically self-interacts and undergoes self-annihilations via 3-to-2 processes. We discuss its production mechanisms and also identify the regions of the parameter space where self-interactions can alleviate the discrepancies at small scales between the predictions of the collisionless dark matter paradigm and cosmological N-body simulations.

Source Population and Acceleration Location of Suprathermal Heavy Ions in Corotating Interaction Regions

Energy Technology Data Exchange (ETDEWEB)

Filwett, R. J.; Desai, M. I. [University of Texas at San Antonio, San Antonio, TX (United States); Dayeh, M. A.; Broiles, T. W. [Southwest Research Institute, San Antonio, TX (United States)

2017-03-20

We have analyzed the ∼20–320 keV nucleon{sup −1} suprathermal (ST) heavy ion abundances in 41 corotating interaction regions (CIRs) observed by the Wind spacecraft from 1995 January to 2008 December. Our results are: (1) the CIR Fe/CNO and NeS/CNO ratios vary with the sunspot number, with values being closer to average solar energetic particle event values during solar maxima and lower than nominal solar wind values during solar minima. The physical mechanism responsible for the depleted abundances during solar minimum remains an open question. (2) The Fe/CNO increases with energy in the 6 events that occurred during solar maximum, while no such trends are observed for the 35 events during solar minimum. (3) The Fe/CNO shows no correlation with the average solar wind speed. (4) The Fe/CNO is well correlated with the corresponding upstream ∼20–320 keV nucleon{sup −1} Fe/CNO and not with the solar wind Fe/O measured by ACE in 31 events. Using the correlations between the upstream ∼20–40 keV nucleon{sup −1} Fe/CNO and the ∼20–320 keV nucleon{sup −1} Fe/CNO in CIRs, we estimate that, on average, the ST particles traveled ∼2 au along the nominal Parker spiral field line, which corresponds to upper limits for the radial distance of the source or acceleration location of ∼1 au beyond Earth orbit. Our results are consistent with those obtained from recent surveys, and confirm that CIR ST heavy ions are accelerated more locally, and are at odds with the traditional viewpoint that CIR ions seen at 1 au are bulk solar wind ions accelerated between 3 and 5 au.

Interacting gluon model for hadron-nucleus and nucleus-nucleus collisions in the central rapidity region

International Nuclear Information System (INIS)

Fowler, G.N.; Navarra, F.S.; Plumer, M.; Lawrence Berkeley Laboratory, Nuclear Science Division, Berkeley, California 94720); Vourdas, A.; Weiner, R.M.

1989-01-01

The interacting gluon model developed to describe the inelasticity distribution in hadron-nucleon collisions has been generalized and applied to hadron-nucleus and nucleus-nucleus interactions. Leading particle spectra and energy distributions in hadron-nucleus and nucleus-nucleus collisions are calculated

Lepton-photon interactions in external background fields

Energy Technology Data Exchange (ETDEWEB)

Akal, Ibrahim [Theory Group, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, D-22607 Hamburg (Germany); Moortgat-Pick, Gudrid [II. Institute for Theoretical Physics, University of Hamburg, Luruper Chaussee 149, D-22761 Hamburg (Germany)

2016-07-01

We investigate lepton-photon interactions in a class of generalized external background fields with periodic plane-wave character. Considering the full interaction with the background, S-matrix elements are calculated exactly. We apply those general expressions to interaction schemes like Compton scattering in specific field configurations, as for instance provided in modern laser facilities, or in high intense regions of future linear colliders. Results are extended to the case of frontal colliding high-energy field photons with leptons such that new insights beyond the usual soft terms become accessible.

Strong enhancement of transport by interaction on contact links

DEFF Research Database (Denmark)

Bohr, Dan; Schmitteckert, P.

2007-01-01

Strong repulsive interactions within a one-dimensional Fermi system in a two-probe configuration normally lead to a reduced off-resonance conductance. We show that if the repulsive interaction extends to the contact regions, a strong increase of the conductance may occur, even for systems where o...

Interactions between finite amplitude small and medium-scale waves in the MLT region.

Science.gov (United States)

Heale, C. J.; Snively, J. B.

2016-12-01

Small-scale gravity waves can propagate high into the thermosphere and deposit significant momentum and energy into the background flow [e.g., Yamada et al., 2001, Fritts et al., 2014]. However, their propagation, dissipation, and spectral evolution can be significantly altered by other waves and dynamics and the nature of these complex interactions are not yet well understood. While many ray-tracing and time-dependent modeling studies have been performed to investigate interactions between waves of varying scales [e.g., Eckermann and Marks .1996, Sartelet. 2003, Liu et al. 2008, Vanderhoff et al., 2008, Senf and Achatz., 2011, Heale et al., 2015], the majority of these have considered waves of larger (tidal) scales, or have simplified one of the waves to be an imposed "background" and discount (or limit) the nonlinear feedback mechanisms between the two waves. In reality, both waves will influence each other, especially at finite amplitudes when nonlinear effects become important or dominant. We present a study of fully nonlinear interactions between small-scale 10s km, 10 min period) and medium-scale wave packets at finite amplitudes, which include feedback between the two waves and the ambient atmosphere. Time-dependence of the larger-scale wave has been identified as an important factor in reducing reflection [Heale et al., 2015] and critical level effects [Sartelet, 2003, Senf and Achatz, 2011], we choose medium-scale waves of different periods, and thus vertical scales, to investigate how this influences the propagation, filtering, and momentum and energy deposition of the small-scale waves, and in turn how these impacts affect the medium-scale waves. We also consider the observable features of these interactions in the mesosphere and lower thermosphere.

Sectoral patterns of interactive learning : an empirical exploration of a case in a Dutch region

NARCIS (Netherlands)

Meeus, M.T.H.; Oerlemans, L.A.G.; Hage, J.

2001-01-01

This paper pursues the development of a theoretical framework that explains interactive learning between innovator firms and external actors in both the knowledge infrastructure and the production chain. The research question is: What kinds of factors explain the interactive learning of innovator

Object individuation is invariant to attentional diffusion: Changes in the size of the attended region do not interact with object-substitution masking.

Science.gov (United States)

Goodhew, Stephanie C; Edwards, Mark

2016-12-01

When the human brain is confronted with complex and dynamic visual scenes, two pivotal processes are at play: visual attention (the process of selecting certain aspects of the scene for privileged processing) and object individuation (determining what information belongs to a continuing object over time versus what represents two or more distinct objects). Here we examined whether these processes are independent or whether they interact. Object-substitution masking (OSM) has been used as a tool to examine such questions, however, there is controversy surrounding whether OSM reflects object individuation versus substitution processes. The object-individuation account is agnostic regarding the role of attention, whereas object-substitution theory stipulates a pivotal role for attention. There have been attempts to investigate the role of attention in OSM, but they have been subject to alternative explanations. Here, therefore, we manipulated the size of the attended region, a pure and uncontaminated attentional manipulation, and examined the impact on OSM. Across three experiments, there was no interaction. This refutes the object-substitution theory of OSM. This, in turn, tell us that object-individuation is invariant the distribution of attention. Copyright © 2016 Elsevier B.V. All rights reserved.

Models of Regional Modernization of the Donbass Region

Directory of Open Access Journals (Sweden)

Konstantin Viktorovich Pavlov

2016-03-01

Full Text Available The article deals with the methodical approach to the assessment of a level of development of post-industrial and neoindustrial models of economic modernization in regional aspect on the basis of various indicators. The proposed approach is approved with use of the statistical materials characterizing the state of economy in the regions of Donbass. The strategy of development of Donbass areas and their industrial cities would have to be based (we mean the situation if there were no military operations on this territory on the basis of the model of neoindustrialization assuming development of the sphere of the hi-tech industry, automation and a computerization of productive forces, replacement of physical work by intellectual labor that is radically capable to change nature of work and structure of labor balance of this macro-region. Branches and sectors of a socio-economic complex of the Donbass region using achievements of fundamental and applied science, engineering and design thought for increase in a share of automation, a computerization and mechanization of workplaces, physical and brainwork prior to the beginning of a political conflict in Ukraine have the potential of development. The authors also pay attention to need of studying the agglomerative effect from interaction of the cities and areas of the Donbass euroregion. It is connected, first of all, with development of vertical and horizontal mechanisms of active use of potential of so-called “cities-kernels”, capable to make the catalyzing impact on production, social infrastructure, creation and development of new perspective branches in the cities-satellites.

Value chain dynamics, settlement trajectories and regional development

DEFF Research Database (Denmark)

Fold, Niels

2014-01-01

Global value chain (GVC) analysis has little to say about the interaction between regions and global chain dynamics. However, recent calls to address broader development issues have resulted in efforts to incorporate a spatial dimension in GVC analysis. Addressing this issue, the paper argues tha...... by value chain dynamics will improve by adding elements from global production network (GPN) theory to the combined methodology, namely by an examination of territorial embeddedness and value (creation, enhancement, capture, distribution) at settlement level.......Global value chain (GVC) analysis has little to say about the interaction between regions and global chain dynamics. However, recent calls to address broader development issues have resulted in efforts to incorporate a spatial dimension in GVC analysis. Addressing this issue, the paper argues...

Information flow between weakly interacting lattices of coupled maps

Energy Technology Data Exchange (ETDEWEB)

Dobyns, York [PEAR, Princeton University, Princeton, NJ 08544-5263 (United States); Atmanspacher, Harald [Institut fuer Grenzgebiete der Psychologie und Psychohygiene, Wilhelmstr. 3a, 79098 Freiburg (Germany)]. E-mail: haa@igpp.de

2006-05-15

Weakly interacting lattices of coupled maps can be modeled as ordinary coupled map lattices separated from each other by boundary regions with small coupling parameters. We demonstrate that such weakly interacting lattices can nevertheless have unexpected and striking effects on each other. Under specific conditions, particular stability properties of the lattices are significantly influenced by their weak mutual interaction. This observation is tantamount to an efficacious information flow across the boundary.

Information flow between weakly interacting lattices of coupled maps

International Nuclear Information System (INIS)

Dobyns, York; Atmanspacher, Harald

2006-01-01

Weakly interacting lattices of coupled maps can be modeled as ordinary coupled map lattices separated from each other by boundary regions with small coupling parameters. We demonstrate that such weakly interacting lattices can nevertheless have unexpected and striking effects on each other. Under specific conditions, particular stability properties of the lattices are significantly influenced by their weak mutual interaction. This observation is tantamount to an efficacious information flow across the boundary

Solar-wind turbulence and shear: a superposed-epoch analysis of corotating interaction regions at 1 AU

Energy Technology Data Exchange (ETDEWEB)

Borovsky, Joseph E [Los Alamos National Laboratory; Denton, Michael H [LANCASTER UNIV.

2009-01-01

A superposed-epoch analysis of ACE and OMNI2 measurements is performed on 27 corotating interaction regions (CIRs) in 2003-2008, with the zero epoch taken to be the stream interface as determined by the maximum of the plasma vorticity. The structure of CIRs is investigated. When the flow measurements are rotated into the local-Parker-spiral coordinate system the shear is seen to be abrupt and intense, with vorticities on the order of 10{sup -5}-10{sup -4} sec{sup -1}. Converging flows perpendicular to the stream interface are seen in the local-Parker-spiral coordinate system and about half of the CIRs show a layer of divergent rebound flow away from the stream interface. Arguments indicate that any spreading of turbulence away from the region where it is produced is limited to about 10{sup 6} km, which is very small compared with the thickness of a CrR. Analysis of the turbulence across the CrRs is performed. When possible, the effects of discontinuities are removed from the data. Fluctuation amplitudes, the Alfvenicity, and the level of Alfvenic correlations all vary smoothly across the CrR. The Alfven ratio exhibits a decrease at the shear zone of the stream interface. Fourier analysis of 4.5-hr subintervals of ACE data is performed and the results are superposed averaged as an ensemble of realizations. The spectral slopes of the velocity, magnetic-field, and total-energy fluctuations vary smoothly across the CIR. The total-energy spectral slope is {approx} 3/2 in the slow and fast wind and in the CrRs. Analysis of the Elsasser inward-outward fluctuations shows a smooth transition across the CrR from an inward-outward balance in the slow wind to an outward dominance in the fast wind. A number of signatures of turbulence driving at the shear zone are sought (entropy change, turbulence amplitude, Alfvenicity, Alfven ratio, spectral slopes, in-out nature): none show evidence of driving of turbulence by shear.

Long‐distance interaction of the integrated HPV fragment with MYC gene and 8q24.22 region upregulating the allele‐specific MYC expression in HeLa cells

Science.gov (United States)

Shen, Congle; Liu, Yongzhen; Shi, Shu; Zhang, Ruiyang; Zhang, Ting; Xu, Qiang; Zhu, Pengfei; Lu, Fengmin

2017-01-01

Human papillomavirus (HPV) infection is the most important risk factor for cervical cancer development. In HeLa cell line, the HPV viral genome is integrated at 8q24 in one allele of chromosome 8. It has been reported that the HPV fragment integrated in HeLa genome can cis‐activate the expression of proto‐oncogene MYC, which is located at 500 kb downstream of the integrated site. However, the underlying molecular mechanism of this regulation is unknown. A recent study reported that MYC was highly expressed exclusively from the HPV‐integrated haplotype, and a long‐range chromatin interaction between the integrated HPV fragment and MYC gene has been hypothesized. In this study, we provided the experimental evidences supporting this long‐range chromatin interaction in HeLa cells by using Chromosome Conformation Capture (3C) method. We found that the integrated HPV fragment, MYC and 8q24.22 was close to each other and might form a trimer in spatial location. When knocking out the integrated HPV fragment or 8q24.22 region from chromosome 8 by CRISPR/Cas9 system, the expression of MYC reduced dramatically in HeLa cells. Interestingly, decreased expression was only observed in three from eight cell clones, when only one 8q24.22 allele was knocked out. Functionally, HPV knockout caused senescence‐associated acidic β‐gal activity in HeLa cells. These data indicate a long‐distance interaction of the integrated HPV fragment with MYC gene and 8q24.22 region, providing an alternative mechanism relevant to the carcinogenicity of HPV integration. PMID:28470669

Regional Convergence of Income: Spatial Analysis

Directory of Open Access Journals (Sweden)

Vera Ivanovna Ivanova

2014-12-01

Full Text Available Russia has a huge territory and a strong interregional heterogeneity, so we can assume that geographical factors have a significant impact on the pace of economic growth in Russian regions. Therefore the article is focused on the following issues: 1 correlation between comparative advantages of geographical location and differences in growth rates; 2 impact of more developed regions on their neighbors and 3 correlation between economic growth of regions and their spatial interaction. The article is devoted to the empirical analysis of regional per capita incomes from 1996 to 2012 and explores the dynamics of the spatial autocorrelation of regional development indicator. It is shown that there is a problem of measuring the intensity of spatial dependence: factor value of Moran’s index varies greatly depending on the choice of the matrix of distances. In addition, with the help of spatial econometrics the author tests the following hypotheses: 1 there is convergence between regions for a specified period; 2 the process of beta convergence is explained by the spatial arrangement of regions and 3 there is positive impact of market size on regional growth. The author empirically confirmed all three hypotheses

Understanding Protein-Protein Interactions Using Local Structural Features

DEFF Research Database (Denmark)

Planas-Iglesias, Joan; Bonet, Jaume; García-García, Javier

2013-01-01

Protein-protein interactions (PPIs) play a relevant role among the different functions of a cell. Identifying the PPI network of a given organism (interactome) is useful to shed light on the key molecular mechanisms within a biological system. In this work, we show the role of structural features...... interacting and non-interacting protein pairs to classify the structural features that sustain the binding (or non-binding) behavior. Our study indicates that not only the interacting region but also the rest of the protein surface are important for the interaction fate. The interpretation...... to score the likelihood of the interaction between two proteins and to develop a method for the prediction of PPIs. We have tested our method on several sets with unbalanced ratios of interactions and non-interactions to simulate real conditions, obtaining accuracies higher than 25% in the most unfavorable...

Interactive social neuroscience to study autism spectrum disorder.

Science.gov (United States)

Rolison, Max J; Naples, Adam J; McPartland, James C

2015-03-01

Individuals with autism spectrum disorder (ASD) demonstrate difficulty with social interactions and relationships, but the neural mechanisms underlying these difficulties remain largely unknown. While social difficulties in ASD are most apparent in the context of interactions with other people, most neuroscience research investigating ASD have provided limited insight into the complex dynamics of these interactions. The development of novel, innovative "interactive social neuroscience" methods to study the brain in contexts with two interacting humans is a necessary advance for ASD research. Studies applying an interactive neuroscience approach to study two brains engaging with one another have revealed significant differences in neural processes during interaction compared to observation in brain regions that are implicated in the neuropathology of ASD. Interactive social neuroscience methods are crucial in clarifying the mechanisms underlying the social and communication deficits that characterize ASD.

Identification of DNA-binding proteins that interact with the 5'-flanking region of the human D-amino acid oxidase gene by pull-down assay coupled with two-dimensional gel electrophoresis and mass spectrometry.

Science.gov (United States)

Tran, Diem Hong; Shishido, Yuji; Chung, Seong Pil; Trinh, Huong Thi Thanh; Yorita, Kazuko; Sakai, Takashi; Fukui, Kiyoshi

2015-12-10

D-Amino acid oxidase (DAO) is a flavoenzyme that metabolizes D-amino acids and is expected to be a promising therapeutic target of schizophrenia and glioblastoma. The study of DNA-binding proteins has yielded much information in the regulation of transcription and other biological processes. However, proteins interacting with DAO gene have not been elucidated. Our assessment of human DAO promoter activity using luciferase reporter system indicated the 5'-flanking region of this gene (-4289 bp from transcription initiation site) has a regulatory sequence for gene expression, which is regulated by multi-protein complexes interacting with this region. By using pull-down assay coupled with two-dimensional gel electrophoresis and mass spectrometry, we identified six proteins binding to the 5'-flanking region of the human DAO gene (zinc finger C2HC domain-containing protein 1A; histidine-tRNA ligase, cytoplasmic; molybdenum cofactor biosynthesis protein; 60S ribosomal protein L37; calponin-1; calmodulin binding protein and heterogeneous nuclear ribonucleoprotein A2/B1). These preliminary results will contribute to the advance in the understanding of the potential factors associated with the regulatory mechanism of DAO expression. Copyright © 2015 Elsevier B.V. All rights reserved.

THREE-VALENCE-PARTICE NUCLEI IN THE 132Sn and 208 Pb REGIONS

International Nuclear Information System (INIS)

Benchikh, L.; Draoui, B.; Latfaoui, M.; Aissaoui, L.

2011-01-01

Full text: Among the nuclei of the nuclear charter, the nuclei around closed shells play a key role in understanding the effective interaction properties between nucleons far from the valley of stability; particulary, the nuclei of a few valence nucleons around doubly magic 208 28Pb126 and 132 50Sn82 nuclei. The interest of both regions 208Pb and 132Sn lies in the fact that there is a great similarity between their nuclear spectroscopic properties. The single energy gaps in both cases are comparable and the orbitals above and below these gaps are similarly ordered. Each single state in the region of 132Sn has its counterpart in that of 208Pb. An interesting predictive consequence, the interactions of the Sn region, difficult region to reach experimentally, can be estimated from their corresponding ones constructed to describe the nuclei of the Pb region. Because of the importance of the similarity existing between the spectroscopy of these two regions, we are interested in nuclei with three valence nucleons in the lead and Tin regions on the basis of experimental data (spin, parity and energy states). In this context, the theoretical study is conducted within the shell model using the MSDI interaction for the energy spectra calculations of the studied nuclei. The calculated results are in good agreement with the available experimental data and show evidence that a close resemblance between the spectroscopy of these two regions persists when moving away from the immediate neighbours of doubly magic 132Sn and 208Pb.

Three-dimensional reacting shock–bubble interaction

NARCIS (Netherlands)

Diegelmann, Felix; Hickel, S.; Adams, Nikolaus A.

2017-01-01

We investigate a reacting shock–bubble interaction through three-dimensional numerical simulations with detailed chemistry. The convex shape of the bubble focuses the shock and generates regions of high pressure and temperature, which are sufficient to ignite the diluted stoichiometric

Influence of magnetic dipole and magnetoelastic interactions on the phase states of 2D non-Heisenberg ferromagnetic with complex exchange interactions

International Nuclear Information System (INIS)

Fridman, Yu.A.; Matunin, D.A.; Klevets, Ph.N.; Kosmachev, O.A.

2009-01-01

The phase states of the 2D non-Heisenberg ferromagnetic with anisotropic bilinear and biquadratic exchange interactions are investigated. The limiting cases of the system under consideration are the two-dimensional XY-model with biquadratic exchange interaction and the isotropic Heisenberg ferromagnetic. The account of the magnetic dipole interaction leads to the realization of spatially inhomogeneous quadrupolar phase. The stability regions of various phase transitions for different values of the material parameters are studied. The phase diagram is built. Besides, the temperature phase transitions are investigated. The influence of the magnetoelastic interaction on the formation of the long-range quadrupolar order is determined.

Thermodynamics of antibody-antigen interaction revealed by mutation analysis of antibody variable regions.

Science.gov (United States)

Akiba, Hiroki; Tsumoto, Kouhei

2015-07-01

Antibodies (immunoglobulins) bind specific molecules (i.e. antigens) with high affinity and specificity. In order to understand their mechanisms of recognition, interaction analysis based on thermodynamic and kinetic parameters, as well as structure determination is crucial. In this review, we focus on mutational analysis which gives information about the role of each amino acid residue in antibody-antigen interaction. Taking anti-hen egg lysozyme antibodies and several anti-small molecule antibodies, the energetic contribution of hot-spot and non-hot-spot residues is discussed in terms of thermodynamics. Here, thermodynamics of the contribution from aromatic, charged and hydrogen bond-forming amino acids are discussed, and their different characteristics have been elucidated. The information gives fundamental understanding of the antibody-antigen interaction. Furthermore, the consequences of antibody engineering are analysed from thermodynamic viewpoints: humanization to reduce immunogenicity and rational design to improve affinity. Amino acid residues outside hot-spots in the interface play important roles in these cases, and thus thermodynamic and kinetic parameters give much information about the antigen recognition. Thermodynamic analysis of mutant antibodies thus should lead to advanced strategies to design and select antibodies with high affinity. © The Authors 2015. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Alignment of non-covalent interactions at protein-protein interfaces.

Directory of Open Access Journals (Sweden)

Hongbo Zhu

Full Text Available BACKGROUND: The study and comparison of protein-protein interfaces is essential for the understanding of the mechanisms of interaction between proteins. While there are many methods for comparing protein structures and protein binding sites, so far no methods have been reported for comparing the geometry of non-covalent interactions occurring at protein-protein interfaces. METHODOLOGY/PRINCIPAL FINDINGS: Here we present a method for aligning non-covalent interactions between different protein-protein interfaces. The method aligns the vector representations of van der Waals interactions and hydrogen bonds based on their geometry. The method has been applied to a dataset which comprises a variety of protein-protein interfaces. The alignments are consistent to a large extent with the results obtained using two other complementary approaches. In addition, we apply the method to three examples of protein mimicry. The method successfully aligns respective interfaces and allows for recognizing conserved interface regions. CONCLUSIONS/SIGNIFICANCE: The Galinter method has been validated in the comparison of interfaces in which homologous subunits are involved, including cases of mimicry. The method is also applicable to comparing interfaces involving non-peptidic compounds. Galinter assists users in identifying local interface regions with similar patterns of non-covalent interactions. This is particularly relevant to the investigation of the molecular basis of interaction mimicry.

Cosmic-Ray Transport in Heliospheric Magnetic Structures. II. Modeling Particle Transport through Corotating Interaction Regions

Energy Technology Data Exchange (ETDEWEB)

Kopp, Andreas [Université Libre de Bruxelles, Service de Physique Statistique et des Plasmas, CP 231, B-1050 Brussels (Belgium); Wiengarten, Tobias; Fichtner, Horst [Institut für Theoretische Physik IV, Ruhr-Universität Bochum, D-44780 Bochum (Germany); Effenberger, Frederic [Department of Physics and KIPAC, Stanford University, Stanford, CA 94305 (United States); Kühl, Patrick; Heber, Bernd [Institut für Experimentelle und Angewandte Physik, Christian-Albrecht-Universität zu Kiel, D-24098 Kiel (Germany); Raath, Jan-Louis; Potgieter, Marius S. [Centre for Space Research, North-West University, 2520 Potchefstroom (South Africa)

2017-03-01

The transport of cosmic rays (CRs) in the heliosphere is determined by the properties of the solar wind plasma. The heliospheric plasma environment has been probed by spacecraft for decades and provides a unique opportunity for testing transport theories. Of particular interest for the three-dimensional (3D) heliospheric CR transport are structures such as corotating interaction regions (CIRs), which, due to the enhancement of the magnetic field strength and magnetic fluctuations within and due to the associated shocks as well as stream interfaces, do influence the CR diffusion and drift. In a three-fold series of papers, we investigate these effects by modeling inner-heliospheric solar wind conditions with the numerical magnetohydrodynamic (MHD) framework Cronos (Wiengarten et al., referred as Paper I), and the results serve as input to a transport code employing a stochastic differential equation approach (this paper). While, in Paper I, we presented results from 3D simulations with Cronos, the MHD output is now taken as an input to the CR transport modeling. We discuss the diffusion and drift behavior of Galactic cosmic rays using the example of different theories, and study the effects of CIRs on these transport processes. In particular, we point out the wide range of possible particle fluxes at a given point in space resulting from these different theories. The restriction of this variety by fitting the numerical results to spacecraft data will be the subject of the third paper of this series.

The Contribution of the Future SWOT Mission to Improve Simulations of River Stages and Stream-Aquifer Interactions at Regional Scale

Science.gov (United States)

Saleh, Firas; Filipo, Nicolas; Biancamaria, Sylvain; Habets, Florence; Rodriguez, Enersto; Mognard, Nelly

2013-09-01

The main objective of this study is to provide a realistic simulation of river stage in regional river networks in order to improve the quantification of stream-aquifer exchanges and better assess the associated aquifer responses that are often impacted by the magnitude and the frequency of the river stage fluctuations. This study extends the earlier work to improve the modeling of the Seine basin with a focus on simulating the hydrodynamics behavior of the Bassée alluvial wetland, a 120 km reach of the Seine River valley located south- east of Paris. The Bassée is of major importance for the drinking-water supply of Paris and surroundings, in addition to its particular hydrodynamic behavior due to the presence of a number of gravels. In this context, the understanding of stream-aquifer interactions is required for water quantity and quality preservation. A regional distributed process-based hydro(geo)logical model, Eau-Dyssée, is used. It aims at the integrated modeling of the hydrosystem to manage the various elements involved in the quantitative and qualitative aspects of water resources. Eau-Dyssée simulates pseudo 3D flow in aquifer systems solving the diffusivity equation with a finite difference numerical scheme. River flow is simulated with a Muskingum model. In addition to the in-stream discharge, a river stage estimate is needed to calculate the water exchange at the stream-aquifer interface using a conductance model. In this context, the future SWOT mission and its high-spatial resolution imagery can provide surface water level measurements at the regional scale that will permit to better characterize the Bassée complex hydro(geo)logical system and better assess soil water content. Moreover, the Bassée is considered as a potential target for the framework of the AirSWOT airborne campaign in France, 2013.

The regional approach and regional studies method in the process of geography teaching

Science.gov (United States)

Dermendzhieva, Stela; Doikov, Martin

2017-03-01

We define the regional approach as a manner of relations among the global trends of development of the "Society-man-nature" system and the local differentiating level of knowledge. Conditionally, interactions interlace under the influence of the character of Geography as a science, education, approaches, goals and teaching methods. Global, national and local development differentiates in three concentric circles at the level of knowledge. It is determined as a conception of modern, complex and effective mechanism for young people, through which knowledge develops in regional historical and cultural perspective; self-consciousness for socio-economic and cultural integration is formed as a part of the. historical-geographical image of the native land. This way an attitude to the. native land is formed as a connecting construct between patriotism to the motherland and the same in global aspect. The possibility for integration and cooperation of the educative geographical content with all the local historical-geographical, regional, profession orientating, artistic, municipal and district institutions, is outlined. Contemporary geographical education appears to be a powerful and indispensable mechanism for organization of human sciences, while the regional approach and the application of the regional studies method stimulate and motivate the development and realization of optimal capacities for direct connection with the local structures and environments.

Russian-Saudian Political Interaction

Directory of Open Access Journals (Sweden)

G. G. Kosach

2017-01-01

Full Text Available The article analyzes the development of Russian-Saudi political interaction after the restoration (at that time of Soviet-Saudi relations of bilateral relations in September 1990. The article focuses on the role of the Russian Muslim community in shaping the Russian politics towards Riyadh in the 1990-2000s. The authors state there are both periods of “crises” and detente in the development of Russian-Saudi political interaction that were marked by events in Chechnya and former Yugoslavia in 1994-2000, “Arab Spring” 2011, the post-September 2015 era, the Russian anti-terrorist campaign in Syria. The alternation of these periods is the constant of Russian-Saudi political contacts, despite the similarity in the approaches of both sides to the ways and methods of solving crisis situations in the Middle East region, as well as the Saudi’s pro-Russian position regarding the change in the status of the Crimea and the situation in the east of Ukraine. The general attitude of both sides towards ISIS and Jabha al-Nusra as a source of terrorism, regional instability and the challenge of international security does not remove the two main contradictions that divide Moscow and Riyadh – attitude toward the official Syrian regime and the Iran’s regional policy. The study comes to the conclusion that Russia and Saudi Arabia are interested (albeit for various reasons in diversifying their foreign policy and foreign economic relations.

Assessing NARCCAP climate model effects using spatial confidence regions

Directory of Open Access Journals (Sweden)

J. P. French

2017-07-01

Full Text Available We assess similarities and differences between model effects for the North American Regional Climate Change Assessment Program (NARCCAP climate models using varying classes of linear regression models. Specifically, we consider how the average temperature effect differs for the various global and regional climate model combinations, including assessment of possible interaction between the effects of global and regional climate models. We use both pointwise and simultaneous inference procedures to identify regions where global and regional climate model effects differ. We also show conclusively that results from pointwise inference are misleading, and that accounting for multiple comparisons is important for making proper inference.

Emotion and attention interactions in social cognition: brain regions involved in processing anger prosody.

Science.gov (United States)

Sander, David; Grandjean, Didier; Pourtois, Gilles; Schwartz, Sophie; Seghier, Mohamed L; Scherer, Klaus R; Vuilleumier, Patrik

2005-12-01

Multiple levels of processing are thought to be involved in the appraisal of emotionally relevant events, with some processes being engaged relatively independently of attention, whereas other processes may depend on attention and current task goals or context. We conducted an event-related fMRI experiment to examine how processing angry voice prosody, an affectively and socially salient signal, is modulated by voluntary attention. To manipulate attention orthogonally to emotional prosody, we used a dichotic listening paradigm in which meaningless utterances, pronounced with either angry or neutral prosody, were presented simultaneously to both ears on each trial. In two successive blocks, participants selectively attended to either the left or right ear and performed a gender-decision on the voice heard on the target side. Our results revealed a functional dissociation between different brain areas. Whereas the right amygdala and bilateral superior temporal sulcus responded to anger prosody irrespective of whether it was heard from a to-be-attended or to-be-ignored voice, the orbitofrontal cortex and the cuneus in medial occipital cortex showed greater activation to the same emotional stimuli when the angry voice was to-be-attended rather than to-be-ignored. Furthermore, regression analyses revealed a strong correlation between orbitofrontal regions and sensitivity on a behavioral inhibition scale measuring proneness to anxiety reactions. Our results underscore the importance of emotion and attention interactions in social cognition by demonstrating that multiple levels of processing are involved in the appraisal of emotionally relevant cues in voices, and by showing a modulation of some emotional responses by both the current task-demands and individual differences.

Limits on Self-Interacting Dark Matter from Neutron Stars

DEFF Research Database (Denmark)

Kouvaris, C.

2012-01-01

We impose new severe constraints on the self-interactions of fermionic asymmetric dark matter based on observations of nearby old neutron stars. Weakly interacting massive particle (WIMP) self-interactions mediated by Yukawa-type interactions can lower significantly the number of WIMPs necessary...... for gravitational collapse of the WIMP population accumulated in a neutron star. Even nearby neutron stars located at regions of low dark matter density can accrete a sufficient number of WIMPs that can potentially collapse, form a mini black hole, and destroy the host star. Based on this, we derive constraints...

Electromagnetic interactions in the {Delta}-resonance region

Energy Technology Data Exchange (ETDEWEB)

Petersson, Rolf

1995-03-01

Cross sections for some electro- and photoinduced spallation reactions on {sup 27}Al and {sup 51}V are measured in the energy region 130 MeV to 580 MeV with the activation method. Comparisons are made with calculations based on the Dalitz formalism for virtual photon spectra, and Monte Carlo calculations based on a cascade evaporation model, respectively. By use of Bremsstrahlung with end-point energies from threshold to 750 MeV, the yields for photo- production of{pi}{sup -}leading to ground and isomeric states in {sup 197}Hg are measured with the activation method. The activity from the Hg-isotopes were measured after a chemical separation of Hg from the target material. The yields and isomeric ratios are compared with impulse approximation calculations. For the photoproduction of {sup 195m}Hg and {sup 192}Hg from {sup 197}Au, the yields were measured. The experimental mean cross sections are compared with data from other experiments and with cascade evaporation calculations. Cross sections for the reaction {sup 14}N({gamma},{pi}{sup -}){sup 14}O are calculated by use of the DWIA, and compared with experimental cross sections for the same reaction by use of the activation method. The cross sections were deduced by the photon difference method together with a smoothing procedure. Different assumptions are made for the theoretical calculations. Absolute cross sections for inclusive electron scattering on H, D, Be, Al and Si are measured for low values of the momentum transfer Q{sup 2} at the scattering angle 10 deg. The incident electron energies were 3 MeV, 6 MeV, and 7 GeV. Through the fitting of A{sub eff}/A=A{sup {epsilon}}, with {epsilon} as a free parameter, to experimental data it is shown than A{sub eff}

Interactions of solvent with the heme region of methemoglobin and fluoro-methemoglobin.

Science.gov (United States)

Koenig, S H; Brown, R D; Lindstrom, T R

1981-06-01

-bound paramagnetic ion by another ligand should decrease relaxation rates, replacement of H2O by F- increases the relaxation rate drastically. The data can all be reconciled, however, with what is anticipated from knowledge of ligand interactions in the heme region.

NS maize hybrids in production regions of Serbia

Directory of Open Access Journals (Sweden)

Stojaković Milisav

2010-01-01

Full Text Available Fifteen NS maize hybrids of FAO 300-700 maturity groups were evaluated in strip trials (plot size 1,120 m2 at 30 locations in Serbia. In all locations including all production regions, the most yielding hybrid was NS 6030 with average yield of 10.9 t ha-1. The additive Main Effects and Multiplicative Interaction (AMMI and the sites regression (SREG models were used to study basic structure of G x E interactions and the possible existence of different mega-environments in Serbian maize growing regions in 2009. The results of the 15 hybrids x 10 locations for grain yield in maize showed by biplot technique indicate several specific location-hybrid deviations (the AMMI biplot, and possible existence of at least one mega-environment (the GGE biplot. .

Learning to Detect Human-Object Interactions

KAUST Repository

Chao, Yu-Wei; Liu, Yunfan; Liu, Xieyang; Zeng, Huayi; Deng, Jia

2017-01-01

In this paper we study the problem of detecting human-object interactions (HOI) in static images, defined as predicting a human and an object bounding box with an interaction class label that connects them. HOI detection is a fundamental problem in computer vision as it provides semantic information about the interactions among the detected objects. We introduce HICO-DET, a new large benchmark for HOI detection, by augmenting the current HICO classification benchmark with instance annotations. We propose Human-Object Region-based Convolutional Neural Networks (HO-RCNN), a novel DNN-based framework for HOI detection. At the core of our HO-RCNN is the Interaction Pattern, a novel DNN input that characterizes the spatial relations between two bounding boxes. We validate the effectiveness of our HO-RCNN using HICO-DET. Experiments demonstrate that our HO-RCNN, by exploiting human-object spatial relations through Interaction Patterns, significantly improves the performance of HOI detection over baseline approaches.

Learning to Detect Human-Object Interactions

KAUST Repository

Chao, Yu-Wei

2017-02-17

In this paper we study the problem of detecting human-object interactions (HOI) in static images, defined as predicting a human and an object bounding box with an interaction class label that connects them. HOI detection is a fundamental problem in computer vision as it provides semantic information about the interactions among the detected objects. We introduce HICO-DET, a new large benchmark for HOI detection, by augmenting the current HICO classification benchmark with instance annotations. We propose Human-Object Region-based Convolutional Neural Networks (HO-RCNN), a novel DNN-based framework for HOI detection. At the core of our HO-RCNN is the Interaction Pattern, a novel DNN input that characterizes the spatial relations between two bounding boxes. We validate the effectiveness of our HO-RCNN using HICO-DET. Experiments demonstrate that our HO-RCNN, by exploiting human-object spatial relations through Interaction Patterns, significantly improves the performance of HOI detection over baseline approaches.

Whole brain and brain regional coexpression network interactions associated with predisposition to alcohol consumption.

Directory of Open Access Journals (Sweden)

Lauren A Vanderlinden

Full Text Available To identify brain transcriptional networks that may predispose an animal to consume alcohol, we used weighted gene coexpression network analysis (WGCNA. Candidate coexpression modules are those with an eigengene expression level that correlates significantly with the level of alcohol consumption across a panel of BXD recombinant inbred mouse strains, and that share a genomic region that regulates the module transcript expression levels (mQTL with a genomic region that regulates alcohol consumption (bQTL. To address a controversy regarding utility of gene expression profiles from whole brain, vs specific brain regions, as indicators of the relationship of gene expression to phenotype, we compared candidate coexpression modules from whole brain gene expression data (gathered with Affymetrix 430 v2 arrays in the Colorado laboratories and from gene expression data from 6 brain regions (nucleus accumbens (NA; prefrontal cortex (PFC; ventral tegmental area (VTA; striatum (ST; hippocampus (HP; cerebellum (CB available from GeneNetwork. The candidate modules were used to construct candidate eigengene networks across brain regions, resulting in three "meta-modules", composed of candidate modules from two or more brain regions (NA, PFC, ST, VTA and whole brain. To mitigate the potential influence of chromosomal location of transcripts and cis-eQTLs in linkage disequilibrium, we calculated a semi-partial correlation of the transcripts in the meta-modules with alcohol consumption conditional on the transcripts' cis-eQTLs. The function of transcripts that retained the correlation with the phenotype after correction for the strong genetic influence, implicates processes of protein metabolism in the ER and Golgi as influencing susceptibility to variation in alcohol consumption. Integration of these data with human GWAS provides further information on the function of polymorphisms associated with alcohol-related traits.

The two-brain approach: how can mutually interacting brains teach us something about social interaction?

Directory of Open Access Journals (Sweden)

Ivana eKonvalinka

2012-07-01

Full Text Available Measuring brain activity simultaneously from two people interacting is intuitively appealing if one is interested in putative neural markers of social interaction. However, given the complex nature of two-person interactions, it has proven difficult to carry out two-person brain imaging experiments in a methodologically feasible and conceptually relevant way. Only a small number of recent studies have put this into practice, using fMRI, EEG, or NIRS. Here, we review two main two-brain methodological approaches, each with two conceptual strategies. The first group has employed simultaneous fMRI recordings, studying a turn-based interactions on the order of seconds, or b pseudo-interactive scenarios, where only one person is scanned at a time, investigating the flow of information between brains. The second group of studies has recorded dual EEG/NIRS from two people interacting, in a face-to-face turn-based interactions, investigating functional connectivity between theory-of-mind regions of interacting partners, or in b continuous mutual interactions on millisecond timescales, to measure coupling between the activity in one person’s brain and the activity in the other’s brain. We discuss the questions these approaches have addressed, and consider scenarios when simultaneous two-brain recordings are needed. Furthermore, we suggest that a quantification of inter-personal neural effects via measures of emergence, and b multivariate decoding models that generalize source-specific features of interaction, may provide novel tools to study brains in interaction. This may allow for a better understanding of social cognition as both representation and participation.

The Baltic-Pontic region in the Europe-Eurasia dual system

Directory of Open Access Journals (Sweden)

Ilyin Mikhail

2012-03-01

Full Text Available This article considers the Baltic-Pontic Sea region not only as a geographical space of Intermarium (Międzymorze, Tarpjūris etc. but also as Intermundium or the interface of European and Russian (Eurasian civilization. The study sets out to clarify the logic of changing patterns shaping this geopolitical area. To this end, the concept of the Baltic-Pontic conflict system proposed by Vadim Tsymbursky is applied and further developed. In contrast to his agent-focused vehicle of analysis disclosing the power interactions in Intermarium, the authors advance an alternative structure-focused model of the Baltic-Pontic system (BPS as a multidimensional evolving space of heterogeneous interactions, which include cooperation. The authors suggest applying the BPS models in interpreting and clarifying historical developments in the area from the late 14th century until the present. The article analyses the spatial, geopolitical and geochronopolitical characteristics of the region, as well as the models of intercivilisational interaction between Europe and Eurasia. The author addresses the issue of the political identity of the region and its ability to play an independent role in the world politics.

Modulation of extremes in the Atlantic region by modes of climate variability/change: A mechanistic coupled regional model study

Energy Technology Data Exchange (ETDEWEB)

Saravanan, Ramalingam [Texas A & M Univ., College Station, TX (United States)

2015-01-09

During the course of this project, we have accomplished the following: 1) Explored the parameter space of component models to minimize regional model bias 2) Assessed the impact of air-sea interaction on hurricanes, focusing in particular on the role of the oceanic barrier layer 3) Contributed to the activities of the U.S. CLIVAR Hurricane Working Group 4) Assessed the impact of lateral and lower boundary conditions on extreme flooding events in the U.S. Midwest in regional model simulations 5) Analyzed the concurrent impact of El Niño-Southern Oscillation and Atlantic Meridional Mode on Atlantic Hurricane activity using observations and regional model simulations

Aerosol interactions with African/Atlantic climate dynamics

International Nuclear Information System (INIS)

Hosseinpour, F; Wilcox, E M

2014-01-01

Mechanistic relationships exist between variability of dust in the oceanic Saharan air layer (OSAL) and transient changes in the dynamics of Western Africa and the tropical Atlantic Ocean. This study provides evidence of possible interactions between dust in the OSAL region and African easterly jet–African easterly wave (AEJ–AEW) system in the climatology of boreal summer, when easterly wave activity peaks. Synoptic-scale changes in instability and precipitation in the African/Atlantic intertropical convergence zone are correlated with enhanced aerosol optical depth (AOD) in the OSAL region in response to anomalous 3D overturning circulations and upstream/downstream thermal anomalies at above and below the mean-AEJ level. Upstream and downstream anomalies are referred to the daily thermal/dynamical changes over the West African monsoon region and the Eastern Atlantic Ocean, respectively. Our hypothesis is that AOD in the OSAL is positively correlated with the downstream AEWs and negatively correlated with the upstream waves from climatological perspective. The similarity between the 3D pattern of thermal/dynamical anomalies correlated with dust outbreaks and those of AEWs provides a mechanism for dust radiative heating in the atmosphere to reinforce AEW activity. We proposed that the interactions of OSAL dust with regional climate mainly occur through coupling of dust with the AEWs. (paper)

Interactions between physicians and pharmaceutical sales representatives in Saudi Arabia.

Science.gov (United States)

Alosaimi, Fahad Dakheel; Alkaabba, Abdulaziz; Qadi, Mahdi; Albahlal, Abdullah; Alabdulkarim, Yasir; Alabduljabbar, Mohammad; Alqahtani, Faisal

2013-01-01

Interaction between physicians and pharmaceutical sales representative (PR) is a major component of the promotional activities by pharmaceutical companies. The lack of studies examining the magnitude of this interaction in Saudi Arabia is evident. The objective of this study is to estimate the magnitude and associated characteristics of physician-PR interaction. A cross-sectional study was conducted among physicians working in the different regions of Saudi Arabia between March and July of 2012. A cross-sectional study was undertaken between March and July of 2012 in the different regions of Saudi Arabia. A self-administrated questionnaire was developed and handed to all participants, both in paper and electronic formats. A total of 663 participants completed the questionnaire. The participation rate was 66.3% (663/1000). The majority of the participants (72.9%) reported interaction with PRs. This was lower among residents/interns compared to higher ranking employees (55.6% vs 83.6%, P strategy to reduce negative impact.

The Highest Resolution Chandra View of Photoionization and Jet-Cloud Interaction in the Nuclear Region of NGC 4151

Science.gov (United States)

Wang, Junfeng; Fabbiano, G.; Karovska, M.; Elvis, M.; Risaliti, G.; Zezas, A.; Mundell, C. G.

2009-10-01

We report high resolution imaging of the nucleus of the Seyfert 1 galaxy NGC 4151 obtained with a 50 ks Chandra High Resolution Camera (HRC) observation. The HRC image resolves the emission on spatial scales of 0farcs5, ~30 pc, showing an extended X-ray morphology overall consistent with the narrow-line region (NLR) seen in optical line emission. Removal of the bright point-like nuclear source and image deconvolution techniques both reveal X-ray enhancements that closely match the substructures seen in the Hubble Space Telescope [O III] image and prominent knots in the radio jet. We find that most of the NLR clouds in NGC 4151 have [O III]/soft X-ray ratio ~10, despite the distance of the clouds from the nucleus. This ratio is consistent with the values observed in NLRs of some Seyfert 2 galaxies, which indicates a uniform ionization parameter even at large radii and a density decreasing as r -2 as expected for a nuclear wind scenario. The [O III]/X-ray ratios at the location of radio knots show an excess of X-ray emission, suggesting shock heating in addition to photoionization. We examine various mechanisms for the X-ray emission and find that, in contrast to jet-related X-ray emission in more powerful active galactic nucleus, the observed jet parameters in NGC 4151 are inconsistent with synchrotron emission, synchrotron self-Compton, inverse Compton of cosmic microwave background photons or galaxy optical light. Instead, our results favor thermal emission from the interaction between radio outflow and NLR gas clouds as the origin for the X-ray emission associated with the jet. This supports previous claims that frequent jet-interstellar medium interaction may explain why jets in Seyfert galaxies appear small, slow, and thermally dominated, distinct from those kpc-scale jets in the radio galaxies.

THE HIGHEST RESOLUTION CHANDRA VIEW OF PHOTOIONIZATION AND JET-CLOUD INTERACTION IN THE NUCLEAR REGION OF NGC 4151

International Nuclear Information System (INIS)

Wang Junfeng; Fabbiano, G.; Karovska, M.; Elvis, M.; Risaliti, G.; Zezas, A.; Mundell, C. G.

2009-01-01

We report high resolution imaging of the nucleus of the Seyfert 1 galaxy NGC 4151 obtained with a 50 ks Chandra High Resolution Camera (HRC) observation. The HRC image resolves the emission on spatial scales of 0.''5, ∼30 pc, showing an extended X-ray morphology overall consistent with the narrow-line region (NLR) seen in optical line emission. Removal of the bright point-like nuclear source and image deconvolution techniques both reveal X-ray enhancements that closely match the substructures seen in the Hubble Space Telescope [O III] image and prominent knots in the radio jet. We find that most of the NLR clouds in NGC 4151 have [O III]/soft X-ray ratio ∼10, despite the distance of the clouds from the nucleus. This ratio is consistent with the values observed in NLRs of some Seyfert 2 galaxies, which indicates a uniform ionization parameter even at large radii and a density decreasing as r -2 as expected for a nuclear wind scenario. The [O III]/X-ray ratios at the location of radio knots show an excess of X-ray emission, suggesting shock heating in addition to photoionization. We examine various mechanisms for the X-ray emission and find that, in contrast to jet-related X-ray emission in more powerful active galactic nucleus, the observed jet parameters in NGC 4151 are inconsistent with synchrotron emission, synchrotron self-Compton, inverse Compton of cosmic microwave background photons or galaxy optical light. Instead, our results favor thermal emission from the interaction between radio outflow and NLR gas clouds as the origin for the X-ray emission associated with the jet. This supports previous claims that frequent jet-interstellar medium interaction may explain why jets in Seyfert galaxies appear small, slow, and thermally dominated, distinct from those kpc-scale jets in the radio galaxies.

Neural correlate of human reciprocity in social interactions.

Science.gov (United States)

Sakaiya, Shiro; Shiraito, Yuki; Kato, Junko; Ide, Hiroko; Okada, Kensuke; Takano, Kouji; Kansaku, Kenji

2013-01-01

Reciprocity plays a key role maintaining cooperation in society. However, little is known about the neural process that underpins human reciprocity during social interactions. Our neuroimaging study manipulated partner identity (computer, human) and strategy (random, tit-for-tat) in repeated prisoner's dilemma games and investigated the neural correlate of reciprocal interaction with humans. Reciprocal cooperation with humans but exploitation of computers by defection was associated with activation in the left amygdala. Amygdala activation was also positively and negatively correlated with a preference change for human partners following tit-for-tat and random strategies, respectively. The correlated activation represented the intensity of positive feeling toward reciprocal and negative feeling toward non-reciprocal partners, and so reflected reciprocity in social interaction. Reciprocity in social interaction, however, might plausibly be misinterpreted and so we also examined the neural coding of insight into the reciprocity of partners. Those with and without insight revealed differential brain activation across the reward-related circuitry (i.e., the right middle dorsolateral prefrontal cortex and dorsal caudate) and theory of mind (ToM) regions [i.e., ventromedial prefrontal cortex (VMPFC) and precuneus]. Among differential activations, activation in the precuneus, which accompanied deactivation of the VMPFC, was specific to those without insight into human partners who were engaged in a tit-for-tat strategy. This asymmetric (de)activation might involve specific contributions of ToM regions to the human search for reciprocity. Consequently, the intensity of emotion attached to human reciprocity was represented in the amygdala, whereas insight into the reciprocity of others was reflected in activation across the reward-related and ToM regions. This suggests the critical role of mentalizing, which was not equated with reward expectation during social interactions.

Neural correlate of human reciprocity in social interactions

Directory of Open Access Journals (Sweden)

Shiro eSakaiya

2013-12-01

Full Text Available Reciprocity plays a key role maintaining cooperation in society. However, little is known about the neural process that underpins human reciprocity during social interactions. Our neuroimaging study manipulated partner identity (computer, human and strategy (random, tit-for-tat in repeated prisoner’s dilemma games and investigated the neural correlate of reciprocal interaction with humans. Reciprocal cooperation with humans but exploitation of computers by defection was associated with activation in the left amygdala. Amygdala activation was also positively and negatively correlated with a preference change for human partners following tit-for-tat and random strategies, respectively. The correlated activation represented the intensity of positive feeling toward reciprocal and negative feeling toward non-reciprocal partners, and so reflected reciprocity in social interaction. Reciprocity in social interaction, however, might plausibly be misinterpreted and so we also examined the neural coding of insight into the reciprocity of partners. Those with and without insight revealed differential brain activation across the reward-related circuitry (i.e., the right middle dorsolateral prefrontal cortex and dorsal caudate and theory of mind (ToM regions (i.e., ventromedial prefrontal cortex [VMPFC] and precuneus. Among differential activations, activation in the precuneus, which accompanied deactivation of the VMPFC, was specific to those without insight into human partners who were engaged in a tit-for-tat strategy. This asymmetric (deactivation might involve specific contributions of ToM regions to the human search for reciprocity. Consequently, the intensity of emotion attached to human reciprocity was represented in the amygdala, whereas insight into the reciprocity of others was reflected in activation across the reward-related and ToM regions. This suggests the critical role of mentalizing, which was not equated with reward expectation during

Nonlinear interactions of focused resonance cone fields with plasmas

International Nuclear Information System (INIS)

Stenzel, R.L.; Gekelman, W.

1977-01-01

A simple yet novel rf exciter structure has been developed for generating remotely intense rf fields in a magnetoplasma. It is a circular line source of radius R in a plane perpendicularB 0 driven with an rf signal at ω 0 E/sub rf/ 2 /nkT/sub e/>0.2, a strong density depression in the focal region (deltan/n>40%) is observed. The density perturbation modifies the cone angle and field distribution. This nonlinear interaction leads to a rapid growth of ion acoustic wave turbulence and a corresponding random rf field distribution in a broadened focal region. The development of the interaction is mapped in space and time

Niflumic acid alters gating of HCN2 pacemaker channels by interaction with the outer region of S4 voltage sensing domains.

Science.gov (United States)

Cheng, Lan; Sanguinetti, Michael C

2009-05-01

Niflumic acid, 2-[[3-(trifluoromethyl)phenyl]amino]pyridine-3-carboxylic acid (NFA), is a nonsteroidal anti-inflammatory drug that also blocks or modifies the gating of many ion channels. Here, we investigated the effects of NFA on hyperpolarization-activated cyclic nucleotide-gated cation (HCN) pacemaker channels expressed in X. laevis oocytes using site-directed mutagenesis and the two-electrode voltage-clamp technique. Extracellular NFA acted rapidly and caused a slowing of activation and deactivation and a hyperpolarizing shift in the voltage dependence of HCN2 channel activation (-24.5 +/- 1.2 mV at 1 mM). Slowed channel gating and reduction of current magnitude was marked in oocytes treated with NFA, while clamped at 0 mV but minimal in oocytes clamped at -100 mV, indicating the drug preferentially interacts with channels in the closed state. NFA at 0.1 to 3 mM shifted the half-point for channel activation in a concentration-dependent manner, with an EC(50) of 0.54 +/- 0.068 mM and a predicted maximum shift of -38 mV. NFA at 1 mM also reduced maximum HCN2 conductance by approximately 20%, presumably by direct block of the pore. The rapid onset and state-dependence of NFA-induced changes in channel gating suggests an interaction with the extracellular region of the S4 transmembrane helix, the primary voltage-sensing domain of HCN2. Neutralization (by mutation to Gln) of any three of the outer four basic charged residues in S4, but not single mutations, abrogated the NFA-induced shift in channel activation. We conclude that NFA alters HCN2 gating by interacting with the extracellular end of the S4 voltage sensor domains.

Long-distance interaction of the integrated HPV fragment with MYC gene and 8q24.22 region upregulating the allele-specific MYC expression in HeLa cells.

Science.gov (United States)

Shen, Congle; Liu, Yongzhen; Shi, Shu; Zhang, Ruiyang; Zhang, Ting; Xu, Qiang; Zhu, Pengfei; Chen, Xiangmei; Lu, Fengmin

2017-08-01

Human papillomavirus (HPV) infection is the most important risk factor for cervical cancer development. In HeLa cell line, the HPV viral genome is integrated at 8q24 in one allele of chromosome 8. It has been reported that the HPV fragment integrated in HeLa genome can cis-activate the expression of proto-oncogene MYC, which is located at 500 kb downstream of the integrated site. However, the underlying molecular mechanism of this regulation is unknown. A recent study reported that MYC was highly expressed exclusively from the HPV-integrated haplotype, and a long-range chromatin interaction between the integrated HPV fragment and MYC gene has been hypothesized. In this study, we provided the experimental evidences supporting this long-range chromatin interaction in HeLa cells by using Chromosome Conformation Capture (3C) method. We found that the integrated HPV fragment, MYC and 8q24.22 was close to each other and might form a trimer in spatial location. When knocking out the integrated HPV fragment or 8q24.22 region from chromosome 8 by CRISPR/Cas9 system, the expression of MYC reduced dramatically in HeLa cells. Interestingly, decreased expression was only observed in three from eight cell clones, when only one 8q24.22 allele was knocked out. Functionally, HPV knockout caused senescence-associated acidic β-gal activity in HeLa cells. These data indicate a long-distance interaction of the integrated HPV fragment with MYC gene and 8q24.22 region, providing an alternative mechanism relevant to the carcinogenicity of HPV integration. © 2017 The Authors International Journal of Cancer published by John Wiley & Sons Ltd on behalf of UICC.

Potential drug-drug interactions on in-patient medication ...

African Journals Online (AJOL)

Potential drug-drug interactions on in-patient medication prescriptions at Mbarara Regional Referral Hospital (MRRH) in western Uganda: prevalence, clinical importance and associated factors. SJ Lubinga, E Uwiduhaye ...

Comprehensive Assessment of Industries Economic Security: Regional Aspect

Directory of Open Access Journals (Sweden)

Viktoriya Viktorovna Akberdina

2017-12-01

Full Text Available The article investigates the interaction of the forms of network integration and the development of complimentary production networks in terms of economic security. Currently, the most developed countries are occurring a transition from the industrial society to the information society. The industry 4.0 as the continuous communication at all levels and characterizes the production processes, in which technologies and devices interact automatically in the value-added chain. Under these new conditions, the former types of organizational structures of economic entities are not sufficiently effective. Therefore, there is a need to create new, modern types of organizational structures. One of these types is network structures. Currently, they are becoming characteristic features of the new economy. Regional economic security depends on internal and external threats, which lead to unstable situations. Regional crisis situations are influenced by both macroeconomic crisis processes and local features of economic and social development, as well as the resource potential, geographical location, national and other peculiarities. The article defines the specific characteristics of the regions of the Ural Federal District, as well as the current situation of the regional economy and threats to the region. The authors have evaluated the economic security of complimentary production networks at the regional level. This evaluation has revealed the interconnection between complimentary production networks and the construction industry in the national economy. We have defined the economic security of complimentary production networks and specified the concept of complimentary production networks. The research findings may be applied by organizations as a new perspective of industry using network forms related to economic security

Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population

Directory of Open Access Journals (Sweden)

Alencar Xavier

2018-02-01

Full Text Available Genetic improvement toward optimized and stable agronomic performance of soybean genotypes is desirable for food security. Understanding how genotypes perform in different environmental conditions helps breeders develop sustainable cultivars adapted to target regions. Complex traits of importance are known to be controlled by a large number of genomic regions with small effects whose magnitude and direction are modulated by environmental factors. Knowledge of the constraints and undesirable effects resulting from genotype by environmental interactions is a key objective in improving selection procedures in soybean breeding programs. In this study, the genetic basis of soybean grain yield responsiveness to environmental factors was examined in a large soybean nested association population. For this, a genome-wide association to performance stability estimates generated from a Finlay-Wilkinson analysis and the inclusion of the interaction between marker genotypes and environmental factors was implemented. Genomic footprints were investigated by analysis and meta-analysis using a recently published multiparent model. Results indicated that specific soybean genomic regions were associated with stability, and that multiplicative interactions were present between environments and genetic background. Seven genomic regions in six chromosomes were identified as being associated with genotype-by-environment interactions. This study provides insight into genomic assisted breeding aimed at achieving a more stable agronomic performance of soybean, and documented opportunities to exploit genomic regions that were specifically associated with interactions involving environments and subpopulations.

Regions – between History and Social Construction

Directory of Open Access Journals (Sweden)

Bakk Miklós

2016-12-01

Full Text Available The study aims to give a comprehensive explanation on how regional construction took place in the European history related to the state-building processes and how the historical heritage of the European state-construction influences today the social construction of the regions. With regard to the state-building processes, the study started from Hechter’s model of ‘primary’ and ‘secondary’ state and his interpretation on the relationship between core regions and peripheries. This model operates with the centralizing power of the state, but from the last decades of the 20th century it was proved via the ‘new regionalism’ that social construction processes became more relevant in shaping new subnational regions. This last aspect is described by Paasi, and the study argues for a new concept of regional identity as a territorial ‘product’ of interacting governance and local society.

Interactions between trophic levels in upwelling and non-upwelling regions during summer monsoon

Digital Repository Service at National Institute of Oceanography (India)

Malik, A; Fernandes, C.E.G.; Gonsalves, M.J.B.D.; Subina, N.S.; Mamatha, S.S.; Krishna, K.S.; Varik, S.; RituKumari; Gauns, M.; Cejoice, R.P.; Pandey, S.S.; Jineesh, V.K.; Kamaleson, A; Vijayan, V.; Mukherjee, I.; Subramanyan, S.; Nair, S.; Ingole, B.S.; LokaBharathi, P.A

Coastal upwelling is a regular phenomenon occurring along the southwest coast of India during summer monsoon (May–September). We hypothesize that there could be a shift in environmental parameters along with changes in the network of interactions...

Theory and Practice of Marine Regional Management in China

Institute of Scientific and Technical Information of China (English)

Shangjie; JI; Qunzhen; QU

2014-01-01

With the development of marine economy in coastal provinces and cities,there comes a series of environmental problems. Marine regional management,as a completely new marine management mode,transforms traditional management mode and can protect marine ecosystem. Thus,the marine regional management is feasible and applicable in China. This paper firstly discussed connotation and development of the marine regional management in China and pointed that the marine regional management is integrated management of a certain marine region. Next,it summarized characteristics of the marine regional management at current stage,for example,land-based pollution of trans-geographic system and marine management under regional government cooperative mechanism. Finally,it came up with recommendations including combining theory and practice of the marine regional management,and establishing marine regional management system as soon as possible,to realize benign interaction and sustainable development of marine economy and ecological environment.

Regionalism, Regionalization and Regional Development

Directory of Open Access Journals (Sweden)

Liviu C. Andrei

2016-03-01

Full Text Available Sustained development is a concept associating other concepts, in its turn, in the EU practice, e.g. regionalism, regionalizing and afferent policies, here including structural policies. This below text, dedicated to integration concepts, will limit on the other hand to regionalizing, otherwise an aspect typical to Europe and to the EU. On the other hand, two aspects come up to strengthen this field of ideas, i.e. the region (al-regionalism-(regional development triplet has either its own history or precise individual outline of terms.

Role of glial cell line-derived neurotrophic factor (GDNF)-neural cell adhesion molecule (NCAM) interactions in induction of neurite outgrowth and identification of a binding site for NCAM in the heel region of GDNF

DEFF Research Database (Denmark)

Nielsen, Janne; Gotfryd, Kamil; Li, Shizhong

2009-01-01

NCAM-induced neurite outgrowth by being independent of NCAM polysialylation. Additionally, we investigated the structural basis for GDNF-NCAM interactions and find that NCAM Ig3 is necessary for GDNF binding. Furthermore, we identify within the heel region of GDNF a binding site for NCAM...

Energy exchange in systems of particles with nonreciprocal interaction

Energy Technology Data Exchange (ETDEWEB)

Vaulina, O. S.; Lisina, I. I., E-mail: Irina.Lisina@mail.ru; Lisin, E. A. [Russian Academy of Sciences, Joint Institute for High Temperatures (Russian Federation)

2015-10-15

A model is proposed to describe the sources of additional kinetic energy and its redistribution in systems of particles with a nonreciprocal interaction. The proposed model is shown to explain the qualitative specific features of the dust particle dynamics in the sheath region of an RF discharge. Prominence is given to the systems of particles with a quasi-dipole–dipole interaction, which is similar to the interaction induced by the ion focusing effects that occur in experiments on a laboratory dusty plasma, and with the shadow interaction caused by thermophoretic forces and Le Sage’s forces.

Simulation of the regional groundwater-flow system of the Menominee Indian Reservation, Wisconsin

Science.gov (United States)

Juckem, Paul F.; Dunning, Charles P.

2015-01-01

A regional, two-dimensional, steady-state groundwater-flow model was developed to simulate the groundwater-flow system and groundwater/surface-water interactions within the Menominee Indian Reservation. The model was developed by the U.S. Geological Survey (USGS), in cooperation with the Menominee Indian Tribe of Wisconsin, to contribute to the fundamental understanding of the region’s hydrogeology. The objectives of the regional model were to improve understanding of the groundwater-flow system, including groundwater/surface-water interactions, and to develop a tool suitable for evaluating the effects of potential regional water-management programs. The computer code GFLOW was used because of the ease with which the model can simulate groundwater/surface-water interactions, provide a framework for simulating regional groundwater-flow systems, and be refined in a stepwise fashion to incorporate new data and simulate groundwater-flow patterns at multiple scales. Simulations made with the regional model reproduce groundwater levels and stream base flows representative of recent conditions (1970–2013) and illustrate groundwater-flow patterns with maps of (1) the simulated water table and groundwater-flow directions, (2) probabilistic areas contributing recharge to high-capacity pumped wells, and (3) estimation of the extent of infiltrated wastewater from treatment lagoons.

The cation-π interaction.

Science.gov (United States)

Dougherty, Dennis A

2013-04-16

The chemistry community now recognizes the cation-π interaction as a major force for molecular recognition, joining the hydrophobic effect, the hydrogen bond, and the ion pair in determining macromolecular structure and drug-receptor interactions. This Account provides the author's perspective on the intellectual origins and fundamental nature of the cation-π interaction. Early studies on cyclophanes established that water-soluble, cationic molecules would forego aqueous solvation to enter a hydrophobic cavity if that cavity was lined with π systems. Important gas phase studies established the fundamental nature of the cation-π interaction. The strength of the cation-π interaction (Li(+) binds to benzene with 38 kcal/mol of binding energy; NH4(+) with 19 kcal/mol) distinguishes it from the weaker polar-π interactions observed in the benzene dimer or water-benzene complexes. In addition to the substantial intrinsic strength of the cation-π interaction in gas phase studies, the cation-π interaction remains energetically significant in aqueous media and under biological conditions. Many studies have shown that cation-π interactions can enhance binding energies by 2-5 kcal/mol, making them competitive with hydrogen bonds and ion pairs in drug-receptor and protein-protein interactions. As with other noncovalent interactions involving aromatic systems, the cation-π interaction includes a substantial electrostatic component. The six (four) C(δ-)-H(δ+) bond dipoles of a molecule like benzene (ethylene) combine to produce a region of negative electrostatic potential on the face of the π system. Simple electrostatics facilitate a natural attraction of cations to the surface. The trend for (gas phase) binding energies is Li(+) > Na(+) > K(+) > Rb(+): as the ion gets larger the charge is dispersed over a larger sphere and binding interactions weaken, a classical electrostatic effect. On other hand, polarizability does not define these interactions. Cyclohexane is

Identification of Adenovirus Serotype 5 Hexon Regions That Interact with Scavenger Receptors

Energy Technology Data Exchange (ETDEWEB)

Khare, Reeti; Reddy, Vijay S.; Nemerow, Glen R.; Barry, Michael A. (Scripps); (Mayo)

2012-05-04

Most of an intravenous dose of species C adenovirus serotype 5 (Ad5) is destroyed by liver Kupffer cells. In contrast, another species C virus, Ad6, evades these cells to mediate more efficient liver gene delivery. Given that this difference in Kupffer cell interaction is mediated by the hypervariable (HVR) loops of the virus hexon protein, we genetically modified each of the seven HVRs of Ad5 with a cysteine residue to enable conditional blocking of these sites with polyethylene glycol (PEG). We show that these modifications do not affect in vitro virus transduction. In contrast, after intravenous injection, targeted PEGylation at HVRs 1, 2, 5, and 7 increased viral liver transduction up to 20-fold. Elimination or saturation of liver Kupffer cells did not significantly affect this increase in the liver transduction. In vitro, PEGylation blocked uptake of viruses via the Kupffer cell scavenger receptor SRA-II. These data suggest that HVRs 1, 2, 5, and 7 of Ad5 may be involved in Kupffer cell recognition and subsequent destruction. These data also demonstrate that this conditional genetic-chemical mutation strategy is a useful tool for investigating the interactions of viruses with host tissues.

Electron scattering in the interacting boson model

NARCIS (Netherlands)

Dieperink, AEL; Iachello, F; Rinat, A; Creswell, C

1978-01-01

It is suggested that the interacting boson model be used in the analysis of electron scattering data. Qualitative features of the expected behavior of the inelastic excitation of some 2 ÷ states inthe transitional Sm-Nd region are discussed

Classification of the regional aborigine ceramic production and its distribution in the central region of Cuba based on NAA and EPMA

International Nuclear Information System (INIS)

Padilla Lavarez, Roman; Celaya Gonzalez, Miriam; Godo Rodriguez, Pedro Pablo; Pla, Rita Rosa; Montoya Rossi, Eduardo; Van Espen, Pierr M.

2001-01-01

The archaeological researches in Cuba have been oriented mainly to the study of both the eastern and westerns territories of the island: the former province Oriente, considered as the location with the higher density of Agroalfarero communities; and the former provinces of Pinar del Rio, La Havana and Matanzas where mostly Archaic sites have been discovered. However, and in despite of the rich diversity and relevance of the central region of Cuba, this region has been only partially and incompletely studied. The variety in the developed of diverse social and economic structures located in the heart of the Cuban archipelago the central region was the centre of the confluence of communities arriving from the eastern territories herding strong agricultural and pottery traditions interacted with the Archaic already established centuries ago in these territories and successive transculturation and assimilation processes should take place. The classification of the aborigine pottery manufacture of the centro region in three major stylistic variations (Jagua, Yayabo and Yaguajay) is described in details on the lathes interpretations of Celaya and Godo, 1998 an the origin and format transformation of the themes represented in the pottery The suitable of combining Neutron Activation Analysis and electron Probe Microanalysis for the purposes of establishing compositional classification of archaeological pottery is in several compositional groups served as new evidence to the discussion of ceramic production and regional interaction between the Subtaino and Archaic settlements

VARIATIONS OF THE MUON FLUX AT SEA LEVEL ASSOCIATED WITH INTERPLANETARY ICMEs AND COROTATING INTERACTION REGIONS

Energy Technology Data Exchange (ETDEWEB)

Augusto, C. R. A.; Kopenkin, V.; Navia, C. E.; Tsui, K. H.; Shigueoka, H. [Instituto de Fisica, Universidade Federal Fluminense, 24210-346, Niteroi, RJ (Brazil); Fauth, A. C.; Kemp, E.; Manganote, E. J. T. [Instituto de Fisica Gleb Wathagin, Universidade Estadual de Campinas, Campinas, SP (Brazil); Leigui de Oliveira, M. A. [Centro de Ciencias Naturais e Humanas da Universidade Federal do ABC, Santo Andre, SP (Brazil); Miranda, P.; Ticona, R.; Velarde, A. [Instituto de Investigaciones Fisicas, UMSA, La Paz Bolivia (United States)

2012-11-10

We present the results of an ongoing survey on the association between the muon flux variation at ground level (3 m above sea level) registered by the Tupi telescopes (Niteri-Brazil, 22.{sup 0}9S, 43.{sup 0}2W, 3 m) and the Earth-directed transient disturbances in the interplanetary medium propagating from the Sun (such as coronal mass ejections (CME), and corotating interaction regions (CIRs)). Their location inside the South Atlantic Anomaly region enables the muon telescopes to achieve a low rigidity of response to primary and secondary charged particles. The present study is primarily based on experimental events obtained by the Tupi telescopes in the period from 2010 August to 2011 December. This time period corresponds to the rising phase of solar cycle 24. The Tupi events are studied in correlation with data obtained by space-borne detectors (SOHO, ACE, GOES). Identification of interplanetary structures and associated solar activity was based on the nomenclature and definitions given by the satellite observations, including an incomplete list of possible interplanetary shocks observed by the CELIAS/MTOF Proton Monitor on the Solar and Heliospheric Observatory (SOHO) spacecraft. Among 29 experimental events reported in the present analysis, there are 15 possibly associated with the CMEs and sheaths, and 3 events with the CIRs (forward or reverse shocks); the origin of the remaining 11 events has not been determined by the satellite detectors. We compare the observed time (delayed or anticipated) of the muon excess (positive or negative) signal on Earth (the Tupi telescopes) with the trigger time of the interplanetary disturbances registered by the satellites located at Lagrange point L1 (SOHO and ACE). The temporal correlation of the observed ground-based events with solar transient events detected by spacecraft suggests a real physical connection between them. We found that the majority of observed events detected by the Tupi experiment were delayed in

Depth of interaction decoding of a continuous crystal detector module

International Nuclear Information System (INIS)

Ling, T; Lewellen, T K; Miyaoka, R S

2007-01-01

We present a clustering method to extract the depth of interaction (DOI) information from an 8 mm thick crystal version of our continuous miniature crystal element (cMiCE) small animal PET detector. This clustering method, based on the maximum-likelihood (ML) method, can effectively build look-up tables (LUT) for different DOI regions. Combined with our statistics-based positioning (SBP) method, which uses a LUT searching algorithm based on the ML method and two-dimensional mean-variance LUTs of light responses from each photomultiplier channel with respect to different gamma ray interaction positions, the position of interaction and DOI can be estimated simultaneously. Data simulated using DETECT2000 were used to help validate our approach. An experiment using our cMiCE detector was designed to evaluate the performance. Two and four DOI region clustering were applied to the simulated data. Two DOI regions were used for the experimental data. The misclassification rate for simulated data is about 3.5% for two DOI regions and 10.2% for four DOI regions. For the experimental data, the rate is estimated to be ∼25%. By using multi-DOI LUTs, we also observed improvement of the detector spatial resolution, especially for the corner region of the crystal. These results show that our ML clustering method is a consistent and reliable way to characterize DOI in a continuous crystal detector without requiring any modifications to the crystal or detector front end electronics. The ability to characterize the depth-dependent light response function from measured data is a major step forward in developing practical detectors with DOI positioning capability

Pion, pion-pion, and pion-nucleus interactions

CERN Document Server

Mukhin, K N; Tikhonov, V N

2002-01-01

This survey is devoted to describing the early studies of 1.1. Gurevich on pion physics that were performed by the photoemulsion method and the studies of the pion-pion interaction that were made by his colleagues on the basis of the hydrogen-bubble-chamber and the magnetic-spectrometer method (as well-as on the basis of the photoemulsion method). Two approaches-an extrapolation of experimental data from the physical region to the pion pole and a theoretical calculation based on the Roy integral equations-are used to deduce information about the pion-pion interaction. The first results obtained for pion-pion and pion-nucleus interactions in the experiments that are being currently performed in Brookhaven and at CERN ( pi pi interaction) and at TRIUMF (Canada) and in Brookhaven (pion-nucleus interaction) are presented, along with the existing theoretical concepts in these realms of physics. (80 refs).

Interaction potential for two different atoms

International Nuclear Information System (INIS)

Kuzmichev, V.E.; Peresypkin, V.V.

1991-01-01

Using the rigorous approach to the nonrelativistic four Coulomb particle problem the interaction potentials between an ordinary hydrogen and muonic-hydrogen atoms at large: R>a e +a μ (1), and intermediate: a e >R>>a μ (2) distances, where a e and a μ are the Bohr radii, are calculated in the adiabatic approximation. The van der Waals potential constants in the region (1) and an explicit potential form in the region (2) taking into account both the polarization effects and the electron screening corrections are determined. 10 refs

Triple helix interactions for eco-innovation

DEFF Research Database (Denmark)

Hermann, Roberto Rivas; Riisgaard, Henrik; Remmen, Arne

the role of science parks in promoting eco-innovation. This study uses qualitative data gathered in two units of analysis: Panama Canal Authority and City of Knowledge Science Park. The study examines how Triple Helix interactions have built the regional system of eco-innovation at the Panama Canal...

HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae.

Science.gov (United States)

Guillen-Ahlers, Hector; Rao, Prahlad K; Levenstein, Mark E; Kennedy-Darling, Julia; Perumalla, Danu S; Jadhav, Avinash Y L; Glenn, Jeremy P; Ludwig-Kubinski, Amy; Drigalenko, Eugene; Montoya, Maria J; Göring, Harald H; Anderson, Corianna D; Scalf, Mark; Gildersleeve, Heidi I S; Cole, Regina; Greene, Alexandra M; Oduro, Akua K; Lazarova, Katarina; Cesnik, Anthony J; Barfknecht, Jared; Cirillo, Lisa A; Gasch, Audrey P; Shortreed, Michael R; Smith, Lloyd M; Olivier, Michael

2016-06-01

Currently available methods for interrogating DNA-protein interactions at individual genomic loci have significant limitations, and make it difficult to work with unmodified cells or examine single-copy regions without specific antibodies. In this study, we describe a physiological application of the Hybridization Capture of Chromatin-Associated Proteins for Proteomics (HyCCAPP) methodology we have developed. Both novel and known locus-specific DNA-protein interactions were identified at the ENO2 and GAL1 promoter regions of Saccharomyces cerevisiae, and revealed subgroups of proteins present in significantly different levels at the loci in cells grown on glucose versus galactose as the carbon source. Results were validated using chromatin immunoprecipitation. Overall, our analysis demonstrates that HyCCAPP is an effective and flexible technology that does not require specific antibodies nor prior knowledge of locally occurring DNA-protein interactions and can now be used to identify changes in protein interactions at target regions in the genome in response to physiological challenges. Copyright © 2016 Elsevier Inc. All rights reserved.

Resummation for polarized semi-inclusive deep-inelastic scattering at small transverse momentum

International Nuclear Information System (INIS)

Koike, Yuji . E-mail koike@nt.sc.niigata-u.ac.jp; Nagashima, Junji; Vogelsang, Werner

2006-01-01

We study the transverse-momentum distribution of hadrons produced in semi-inclusive deep-inelastic scattering (SIDIS). We consider cross sections for various combinations of polarizations of the initial lepton and nucleon or the produced hadron, for which we perform the resummation of large double-logarithmic perturbative corrections arising at small transverse momentum. We present phenomenological results for the processes lp->lπX with longitudinally polarized leptons and protons. We discuss the impact of the perturbative resummation and of estimated non-perturbative contributions on the corresponding cross sections and their spin asymmetry. Our results should be relevant for ongoing studies in the COMPASS experiment at CERN, and for future experiments at the proposed eRHIC collider at BNL

Electron scattering in the interacting boson model

International Nuclear Information System (INIS)

Dieperink, A.E.L.; Iachello, F.; Creswell, C.

1978-01-01

It is suggested that the interacting boson model be used in the analysis of electron scattering data. Qualitative features of the expected behavior of the inelastic excitation of some 2 + states in the transitional Sm-Nd region are discussed. (Auth.)

The interaction of supernova ejecta with an ambient medium

International Nuclear Information System (INIS)

Chevalier, R.A.

1983-01-01

Plausible environments for supernovae are the interstellar medium with constant density or a circumstellar medium built up by mass loss with rho proportional to r -2 . Self-similar solutions for the interaction region between the expanding supernova gas and the ambient gas exist provided that the expanding gas has rho proportional to rsup(-n) with n > 5. The circumstellar medium case is likely to be important for the early evolution of Type II supernovae because their progenitor stars are probably red supergiants. The radio and X-ray emission observed from extragalactic supernovae may be from this interaction region. The early self-similar solutions can also be applied to the young galactic remnants. (Auth.)

Modelling the interactions between regional farming structure, nitrogen losses and environmental regulation

DEFF Research Database (Denmark)

Happe, Kathrin; Hutchings, Nick; Dalgaard, Tommy

2011-01-01

randomly distributed within this region. The reference scenario (REF) implemented the current area-based Common Agricultural Policy payments for Denmark. The 1 LU scenario applied the additional constraint that a minimum area of 1 ha land had to be available for the application of the manure produced...

Improving image segmentation by learning region affinities

Energy Technology Data Exchange (ETDEWEB)

Prasad, Lakshman [Los Alamos National Laboratory; Yang, Xingwei [TEMPLE UNIV.; Latecki, Longin J [TEMPLE UNIV.

2010-11-03

We utilize the context information of other regions in hierarchical image segmentation to learn new regions affinities. It is well known that a single choice of quantization of an image space is highly unlikely to be a common optimal quantization level for all categories. Each level of quantization has its own benefits. Therefore, we utilize the hierarchical information among different quantizations as well as spatial proximity of their regions. The proposed affinity learning takes into account higher order relations among image regions, both local and long range relations, making it robust to instabilities and errors of the original, pairwise region affinities. Once the learnt affinities are obtained, we use a standard image segmentation algorithm to get the final segmentation. Moreover, the learnt affinities can be naturally unutilized in interactive segmentation. Experimental results on Berkeley Segmentation Dataset and MSRC Object Recognition Dataset are comparable and in some aspects better than the state-of-art methods.

A First Baseline for the Magnets in the High Luminosity LHC Insertion Regions

CERN Document Server

Todesco, E; Ambrosio, G; Arduini, G; Cerutti, F; De Maria, R; Esposito, L; Fartoukh, S; Ferracin, P; Felice, H; Gupta, R; Kersevan, R; Mokhov, N; Nakamoto, T; Rakno, I; Rifflet, J M; Rossi, L; Sabbi, G L; Segreti, M; Toral, F; Xu, Q; Wanderer, P; van Weelderen, R

2014-01-01

The High Luminosity LHC (HL-LHC) project aims at accumulating 3000 fb-1 in the years 2023-2035, i.e. ten times more w.r.t. the nominal LHC performance expected for 2010- 2021. One key element to reach this challenging performance is a new insertion region to reduce the beam size in the interaction point by approximately a factor two. This requires larger aperture magnets in the region spanning from the interaction point to the matching section quadrupoles. This aperture has been fixed to 150 mm for the inner triplet quadrupoles in 2012. In this paper we give a first baseline of the interaction region. We discuss the main motivations that lead us to choose the technology, the combination of fields/gradients and lengths, the apertures, the quantity of superconductor, and the operational margin. Key elements are also the constraints given by the energy deposition in terms of heat load and radiation damage; we present the main features related to shielding and heat removal.

Mathematical simulation of point defect interaction with grain boundaries

International Nuclear Information System (INIS)

Bojko, V.S.

1987-01-01

Published works, where the interaction of point defects and grain boundaries was studied by mathematical simulation methods, have been analysed. Energetics of the vacancy formation both in nuclei of large-angle special grain boundaries and in lattice regions adjoining them has been considered. The data obtained permit to explain specific features of grain-boundary diffusion processes. Results of mathematical simulation of the interaction of impurity atoms and boundaries have been considered. Specific features of the helium atom interaction with large-angle grain boundaries are analysed as well

Eukaryotic elongation factor 1-beta interacts with the 5' untranslated region of the M gene of Nipah virus to promote mRNA translation.

Science.gov (United States)

Uchida, Shotaro; Sato, Hiroki; Yoneda, Misako; Kai, Chieko

2016-09-01

Nipah virus belongs to the genus Henipavirus in the family Paramyxoviridae, and its RNA genome is larger than those of other paramyxoviruses because it has long untranslated regions (UTRs) in each gene. However, the functions of these UTRs are not fully understood. In this study, we investigated the functions of the 5' UTRs and found that the 5' UTR of the M gene upregulated the translation of a reporter gene. Using an RNA pull-down assay, we showed that eukaryotic elongation factor 1-beta (EEF1B2) interacts with nucleotides 81-100 of the M 5' UTR and specifically enhances its translation efficiency. Our results suggest that the M 5' UTR promotes the production of M protein and viral budding by recruiting EEF1B2.

Interaction-flip identities in spin glasses

NARCIS (Netherlands)

Contucci, P.; Giardinà, C.; Giberti, C.

2009-01-01

We study the properties of fluctuation for the free energies and internal energies of two spin glass systems that differ for having some set of interactions flipped. We show that their difference has a variance that grows like the volume of the flipped region. Using a new interpolation method, which

Electron interactions with nuclei: Progress report

International Nuclear Information System (INIS)

1988-08-01

This paper contains information on the following topics: inclusive electron scattering; electroexcitation of Δ in nuclei; longitudinal and transverse response in the quasi-elastic region; electron scattering at MIT-Bates; detector development at LEGS; electron scattering at Saclay; intermediate energy nuclear interactions; research and development at CEBAF; and computing facilities

Experimental visualization coalesced interaction of sliding bubble near wall in vertical narrow rectangular channel

International Nuclear Information System (INIS)

Xu Jianjun; Chen Bingde; Wang Xiaojun

2011-01-01

The characteristic of the coalesced sliding bubble was visually observed by wide side and narrow side of the narrow rectangular channel using high speed digital camera. The results show that the coalesced time among the sliding bubbles is quick, and the new formation of coalesced bubble is not lift-off, and it continues to slide along the heated surface in low heat flux for the isolated bubble region. The influence region is about 2 times projected area of the sliding bubble when the sliding bubbles begin to interact. The sliding bubble velocities increase duo to the interaction among the bubbles, which contributes to enhance heat transfer of this region. Finally, the effect of coalesced interaction of growing bubble in the nucleation sites on bubble lift-off was discussed and analysed. (authors)

Economic Diplomacy in Africa: The Impact of Regional Integration versus Bilateral Diplomacy on Bilateral Trade

DEFF Research Database (Denmark)

Afesorgbor, Sylvanus Kwaku

The paper examines the impact of two main instruments of economic diplomacy — regional integration and commercial diplomacy on export flows among African states. We test whether there is any evidence of a trade-off or complementary interaction between these two instruments in trade facilitation. We...... compared to regional integration. We also find a nuanced interaction between these two instruments of economic diplomacy: the trade–stimulating effect of diplomatic exchange is less pronounced among African countries that shared membership of the same regional bloc. Generally, this could mean...... that there exists a trade-off between regional integration and commercial diplomacy in facilitating exports or a lack of complementarity between these two instruments of economic diplomacy....

GIS-Based Evaluation of Spatial Interactions by Geographic Disproportionality of Industrial Diversity

Directory of Open Access Journals (Sweden)

Jemyung Lee

2017-11-01

Full Text Available Diversity of regional industry is regarded as a key factor for regional development, as it has a positive relationship with economic stability, which attracts population. This paper focuses on how the spatial imbalance of industrial diversity contributes to the population change caused by inter-regional migration. This paper introduces a spatial interaction model for the Geographic Information System (GIS-based simulation of the spatial interactions to evaluate the demographic attraction force. The proposed model adopts the notions of gravity, entropy, and virtual work. An industrial classification by profit level is introduced and its diversity is quantified with the entropy of information theory. The introduced model is applied to the cases of 207 regions in South Korea. Spatial interactions are simulated with an optimized model and their resultant forces, the demographic attraction forces, are compared with observed net migration for verification. The results show that the evaluated attraction forces from industrial diversity have a very significant, positive, and moderate relationship with net migration, while other conventional factors of industry, population, economy, and the job market do not. This paper concludes that the geographical quality of industrial diversity has positive and significant effects on population change by migration.

Dynamics of interacting edge defects in copolymer lamellae

Science.gov (United States)

Dalnoki-Veress, Kari; McGraw, Joshua D.; Rowe, Ian D. W.

2011-03-01

It is known that terraces at the interface of lamella forming diblock copolymers do not make discontinuous jumps in height. Rather, their profiles are smoothly varying. The width of the transition region between two lamellar heights is typically several hundreds of nanometres, resulting from a balance between surface tension, chain stretching penalties, and the enthalpy of mixing. What is less well known in these systems is what happens when two transition regions approach one another. In this study, we show that time dependent experimental data of interacting copolymer lamellar edges is consistent with a model that assumes a repulsion between adjacent edges. The range of the interaction between edge defects is consistent with the profile width of noninteracting diblock terraces. Financial support from NSERC of Canada is gratefully acknowledged.

Air-Sea Interaction in the Somali Current Region

Science.gov (United States)

Jensen, T. G.; Rydbeck, A.

2017-12-01

The western Indian Ocean is an area of high eddy-kinetic energy generated by local wind-stress curl, instability of boundary currents as well as Rossby waves from the west coast of India and the equatorial wave guide as they reflect off the African coast. The presence of meso-scale eddies and coastal upwelling during the Southwest Monsoon affects the air-sea interaction on those scales. The U.S. Navy's Coupled Ocean-Atmosphere Mesoscale Prediction System (COAMPS) is used to understand and quantify the surface flux, effects on surface waves and the role of Sea Surface Temperature anomalies on ocean-atmosphere coupling in that area. The COAMPS atmosphere model component with 9 km resolution is fully coupled to the Navy Coastal Ocean Model (NCOM) with 3.5 km resolution and the Simulating WAves Nearshore (SWAN) wave model with 10 km resolution. Data assimilation using a 3D-variational approach is included in hindcast runs performed daily since June 1, 2015. An interesting result is that a westward jet associated with downwelling equatorial Rossy waves initiated the reversal from the southward Somali Current found during the northeast monsoon to a northward flow in March 2016 more than a month before the beginning of the southwest monsoon. It is also found that warm SST anomalies in the Somali Current eddies, locally increase surface wind speed due to an increase in the atmospheric boundary layer height. This results in an increase in significant wave height and also an increase in heat flux to the atmosphere. Cold SST anomalies over upwelling filaments have the opposite impacts on air-sea fluxes.