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Sample records for epibiont zoothamnium intermedium

  1. Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum

    DEFF Research Database (Denmark)

    Røy, Hans; Vopel, Kay; Huettel, Marcus

    2009-01-01

    with flow adjusted to in situ velocity. The water motion around the colonies was then characterized by particle tracking velocimetry. This shows that the feather-shaped colony of Z. niveum generates a unidirectional flow of seawater through the colony with no recirculation. The source of the feeding current......We investigated the constraints on sulfide uptake by bacterial ectosymbionts on the marine peritrich ciliate Zoothamnium niveum by a combination of experimental and numerical methods. Protists with symbionts were collected on large blocks of mangrove-peat. The blocks were placed in a flow cell...... bacteria due to Z. niveum's habitat preference and due to the feeding current. Z. niveum is capable of exploiting low concentrations of sulfide in near norm-oxic seawater. This links its otherwise dissimilar habitats and makes it functionally similar to invertebrates with thiotrophic symbionts in filtering...

  2. First report of ciliate (Protozoa) epibionts on deep-sea harpacticoid copepods

    Science.gov (United States)

    Sedlacek, Linda; Thistle, David; Fernandez-Leborans, Gregorio; Carman, Kevin R.; Barry, James P.

    2013-08-01

    We report the first observations of ciliate epibionts on deep-sea, benthic harpacticoid copepods. One ciliate epibiont species belonged to class Karyorelictea, one to subclass Suctoria, and one to subclass Peritrichia. Our samples came from the continental rise off central California (36.709°N, 123.523°W, 3607 m depth). We found that adult harpacticoids carried ciliate epibionts significantly more frequently than did subadult copepodids. The reason for the pattern is unknown, but it may involve differences between adults and subadult copepodids in size or in time spent swimming. We also found that the ciliate epibiont species occurred unusually frequently on the adults of two species of harpacticoid copepod; a third harpacticoid species just failed the significance test. When we ranked the 57 harpacticoid species in our samples in order of abundance, three species identified were, as a group, significantly more abundant than expected by chance if one assumes that the abundance of the group and the presence of ciliate epibionts on them were uncorrelated. High abundance may be among the reasons a harpacticoid species carries a ciliate epibiont species disproportionately frequently. For the combinations of harpacticoid species and ciliate epibiont species identified, we found one in which males and females differed significantly in the proportion that carried epibionts. Such a sex bias has also been reported for shallow-water, calanoid copepods.

  3. Effectivity of immunostimulant from Zoothamnium penaei protein membrane for decreasing the mortality rate of white shrimp (Litopenaeus vannamei) in traditional plus pond

    Science.gov (United States)

    Mahasri, G.; Kusdarwati, R.; Kismiyati; Rozi; Gustrifandi, H.

    2018-04-01

    The purpose of this research was to analys immunogenic membrane protein as immunostimulant development material to control the mortality of white shrimp in traditional plus pond. This research was designed to use explorative experiment and experimental laboratory methods which used completed random sampling design. Collected data was analyzed with analysis of variance for examination of survival rate (SR), total haemocyte count (THC) and differensial haemocyte Count (DHC). The research divided into 2 part of riset: (1) Identification, cultivation Zoothamnium penaei, analysed of membrane protein by SDS-PAGE, (2) Field test protein membran on Survival Rate level, immune response (THC and/or DHC level) and infestation of Zoothamnium penaei in traditional plus pond. The result showed that there were seven bands membrane protein of Zoothamnium penaei with molecular weight 38 kDa, 48 kDa, 67 kDa, 71 kDa, 77 kDa, 98 kDa dan 104 kDa by using SDS-PAGE. Immunogenicity tested decrease by using ELISA and western blotting there are only found three bands with molecular weight 38 kDa, 48 kDa dan 67 kDa. The membrane protein could increase the immun respons and decrease the mortality, by subsequenly, it could increase the survival rate from 17% until 68% and pressured the parasite infestation of white shrimp.

  4. Embryology and cytogenetics of Eupatorium pauciflorum and E. intermedium (Compositae

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    Maristela Sanches Bertasso-Borges

    1998-12-01

    Full Text Available The embryology of Eupatorium pauciflorum indicates diplospory with autonomous endosperm development. The embryo sac is of the polygonum type and the polar nuclei mostly fuse before anthesis. The occurrence of precocious embryo and endosperm development in unopened florets, and the total absence of germinated pollen grains on exposed stigmas, as well as the absence of pollen tubes in the ovules, indicate agamospermy to be obligate and embryo and endosperm development autonomous. The study of microsporogenesis revealed the total absence of pollen production in consequence of microsporocyte degeneration before the onset of meiosis, which resulted in absolute male sterility. E. pauciflorum was demonstrated to be an autotriploid with a basic set of 10 chromosomes, each represented three times. Embryological studies showed E. intermedium to undergo reductive meiosis with tetrad formation during megasporogenesis, followed by monosporic embryo sac development of the polygonum type. The polar nuclei fuse before anthesis. The egg cell invariably attains anthesis still undivided, without precocious embryony. Meiosis of microsporogenesis results in the regular formation of 10 bivalents and the subsequent stages of microsporogenesis are normal. Stigmatic loads indicate the regular occurrence of pollination with viable, functional grains. Karyotypic studies revealed a complement of 20 chromosomes separable into 10 pairs. It is concluded that E. pauciflorum, as represented by the material studied, is apomictic while E. intermedium is sexual.Os estudos embriológicos indicam que Eupatorium pauciflorum apresenta diplosporia com desenvolvimento autônomo do endosperma. O saco embrionário é do tipo polygonum e os núcleos polares se fundem antes da antese. A ocorrência de embrionia precoce e desenvolvimento do endosperma em flores fechadas, e a total ausência de grãos de pólen germinados em estigmas expostos, bem como a ausência de tubos polínicos nos

  5. Microdissection and Chromosome Painting of the Alien Chromosome in an Addition Line of Wheat - Thinopyrum intermedium

    Science.gov (United States)

    Yin, Weibo; Zhang, Yingxin; Chen, Yuhong; Wang, Richard R.-C.; Zhang, Xiangqi; Han, Fangpu; Hu, Zanmin

    2013-01-01

    In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat - Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by DOP-PCR was used as a probe to hybridize with metaphase chromosomes of TAi-27 and Th . intermedium . Results showed that hybridization signals were observed in all regions of a pair of the smallest alien chromosomes and the pericentromeric area of another pair of alien chromosomes in TAi-27, indicating that the probe from microdissected chromosome is species specific. In Th . intermedium , 14 chromosomes had wide and strong hybridization signals distributed mainly on the pericentromere area and 9 chromosomes with narrow and weak signals on the pericentromere area. The remaining chromosomes displayed a very weak or no signal. Sequential FISH/GISH on Th . intermedium chromosomes using the DNAs of microdissected chromosome, Pseudoroegneria spicata (St genome) and pDbH12 (a Js genome specific probe) as the probes indicated that the microdissected chromosome belonged to the St genome, three genomes (Js, J and St) in Th . intermedium could be distinguished, in which there is no hybridization signal on J genome that is similar to the genome of Th . bessarabicum . Our results showed that the smallest alien chromosomes may represent a truncated chromosome and the repetitive sequence distribution might be similar in different chromosomes within the St genome. However, the repetitive sequence distributions are different within the Js genome, within a single chromosome, and among different genomes in Th . intermedium . Our results suggested that chromosome painting could be feasible in some plants and useful in detecting chromosome variation and repetitive sequence distribution in different genomes of polyploidy plants, which is helpful for understanding the evolution of different

  6. PRIMER REGISTRO DE EPIBIONTES EN EJEMPLARES JUVENILES DE CROCODYLUS ACUTUS EN EL MEDIO SILVESTRE

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    CUPUL-MAGAÑA FABIO GERMÁN

    2005-06-01

    Full Text Available Se registra por vez primera la presencia de cuatro géneros de diatomeas (Amphora, Cymbella, Navicula y Nitzschia, un alga azul-verde del género Trichodesmium y colonias de protozoarios ciliados del género Epistylis, como epibiontes de cocodrilos de río juveniles (Crocodylus acutus. Los epibiontes se encontraron en la región ventral del cuerpo de cocodrilos juveniles, menores de 75 cm de largo, capturados en el estero Boca Negra, Jalisco, México.

  7. Genetic responses of the marine copepod Acartia tonsa (Dana) to heat shock and epibiont infestation

    DEFF Research Database (Denmark)

    Petkeviciute, Egle; Kania, Per Walter; Skovgaard, Alf

    2015-01-01

    Expression of stress-related genes was investigated in the marine copepod Acartia tonsa in relation to heat shock at two different salinities (10 and 32‰), and it was furthermore investigated whether experimentally induced epibiont infestation led to elevated expression of stress-related genes...

  8. Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium

    KAUST Repository

    Lafi, Feras Fawzi

    2017-03-03

    Ochrobactrum intermedium strain SA148 is a plant growth-promoting bacterium isolated from sandy soil in the Jizan area of Saudi Arabia. Here, we report the 4.9-Mb draft genome sequence of this strain, highlighting different pathways characteristic of plant growth promotion activity and environmental adaptation of SA148.

  9. Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium

    KAUST Repository

    Lafi, Feras Fawzi; Alam, Intikhab; Geurts, Rene; Bisseling, Ton; Bajic, Vladimir B.; Hirt, Heribert; Saad, Maged

    2017-01-01

    Ochrobactrum intermedium strain SA148 is a plant growth-promoting bacterium isolated from sandy soil in the Jizan area of Saudi Arabia. Here, we report the 4.9-Mb draft genome sequence of this strain, highlighting different pathways characteristic

  10. New records of Thecacineta cothurnioides and Trematosoma rotunda (Ciliophora, Suctorea) as epibionts on nematodes from the Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.

    . 2008. An overview of suctorian ciliates (Ciliophora, Suctorea) as epibionts of halacarid mites (Acari, Halacaridae). Zootaxa. 1810, 60-68. Fisher R. 2003. Ciliate hitch-hikers-nematode ecto-commensals from tropical Australian sea-grass meadows...

  11. Settlement pattern of Posidonia oceanica epibionts along a gradient of ocean acidification: an approach with mimics

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    L. DONNARUMMA

    2014-02-01

    Full Text Available Effects of ocean acidification (OA on the colonization/settlement pattern of the epibiont community of the leaves and rhizomesof the Mediterranean seagrass,Posidoniaoceanica, have been studied at volcanic CO2vents off Ischia (Italy, using “mimics”as artificial substrates. The experiments were conducted in shallowPosidoniastands (2-3 m depth, in three stations on the northand three on the south sides of the study area, distributed along a pH gradient. At each station, 4 rhizome mimics and 6 artificialleaves were collected every three months (Sept 2009-Sept 2010. The epibionts on both leaf and rhizome mimics showed clearchanges along the pH gradient; coralline algae and calcareous invertebrates (bryozoans, serpulid polychaetes and barnacles weredominant at control stations but progressively disappeared at the most acidified stations. In these extremely low pH sites theassemblage was dominated by filamentous algae and non calcareous taxa such as hydroids and tunicates. Settlement pattern onthe artificial leaves and rhizome mimics over time showed a consistent distribution pattern along the pH gradient and highlightedthe peak of recruitment of the various organisms in different periods according to their life history.Posidoniamimics at theacidified station showed a poor and very simplified assemblage where calcifying epibionts seemed less competitive for space. Thisprofound difference in epiphyte communities in low pH conditions suggests cascading effects on the food web of the meadow and,consequently, on the functioning of the system

  12. Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification.

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    Katja Guilini

    Full Text Available The unprecedented rate of CO2 increase in our atmosphere and subsequent ocean acidification (OA threatens coastal ecosystems. To forecast the functioning of coastal seagrass ecosystems in acidified oceans, more knowledge on the long-term adaptive capacities of seagrass species and their epibionts is needed. Therefore we studied morphological characteristics of Posidonia oceanica and the structure of its epibiont communities at a Mediterranean volcanic CO2 vent off Panarea Island (Italy and performed a laboratory experiment to test the effect of OA on P. oceanica photosynthesis and its potential buffering capacity. At the study site east of Basiluzzo Islet, venting of CO2 gas was controlled by tides, resulting in an average pH difference of 0.1 between the vent and reference site. P. oceanica shoot and leaf density was unaffected by these levels of OA, although shorter leaves at the vent site suggest increased susceptibility to erosion, potentially by herbivores. The community of sessile epibionts differed in composition and was characterized by a higher species richness at the vent site, though net epiphytic calcium carbonate concentration was similar. These findings suggest a higher ecosystem complexity at the vent site, which may have facilitated the higher diversity of copepods in the otherwise unaffected motile epibiont community. In the laboratory experiment, P. oceanica photosynthesis increased with decreasing pHT (7.6, 6.6, 5.5, which induced an elevated pH at the leaf surfaces of up to 0.5 units compared to the ambient seawater pHT of 6.6. This suggests a temporary pH buffering in the diffusive boundary layer of leaves, which could be favorable for epibiont organisms. The results of this multispecies study contribute to understanding community-level responses and underlying processes in long-term acidified conditions. Increased replication and monitoring of physico-chemical parameters on an annual scale are, however, recommended to

  13. Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification.

    Science.gov (United States)

    Guilini, Katja; Weber, Miriam; de Beer, Dirk; Schneider, Matthias; Molari, Massimiliano; Lott, Christian; Bodnar, Wanda; Mascart, Thibaud; De Troch, Marleen; Vanreusel, Ann

    2017-01-01

    The unprecedented rate of CO2 increase in our atmosphere and subsequent ocean acidification (OA) threatens coastal ecosystems. To forecast the functioning of coastal seagrass ecosystems in acidified oceans, more knowledge on the long-term adaptive capacities of seagrass species and their epibionts is needed. Therefore we studied morphological characteristics of Posidonia oceanica and the structure of its epibiont communities at a Mediterranean volcanic CO2 vent off Panarea Island (Italy) and performed a laboratory experiment to test the effect of OA on P. oceanica photosynthesis and its potential buffering capacity. At the study site east of Basiluzzo Islet, venting of CO2 gas was controlled by tides, resulting in an average pH difference of 0.1 between the vent and reference site. P. oceanica shoot and leaf density was unaffected by these levels of OA, although shorter leaves at the vent site suggest increased susceptibility to erosion, potentially by herbivores. The community of sessile epibionts differed in composition and was characterized by a higher species richness at the vent site, though net epiphytic calcium carbonate concentration was similar. These findings suggest a higher ecosystem complexity at the vent site, which may have facilitated the higher diversity of copepods in the otherwise unaffected motile epibiont community. In the laboratory experiment, P. oceanica photosynthesis increased with decreasing pHT (7.6, 6.6, 5.5), which induced an elevated pH at the leaf surfaces of up to 0.5 units compared to the ambient seawater pHT of 6.6. This suggests a temporary pH buffering in the diffusive boundary layer of leaves, which could be favorable for epibiont organisms. The results of this multispecies study contribute to understanding community-level responses and underlying processes in long-term acidified conditions. Increased replication and monitoring of physico-chemical parameters on an annual scale are, however, recommended to assure that the

  14. Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium.

    Science.gov (United States)

    Deng, Chuanliang; Bai, Lili; Fu, Shulan; Yin, Weibo; Zhang, Yingxin; Chen, Yuhong; Wang, Richard R-C; Zhang, Xiangqi; Han, Fangpu; Hu, Zanmin

    2013-01-01

    In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat--Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by DOP-PCR was used as a probe to hybridize with metaphase chromosomes of TAi-27 and Th. intermedium. Results showed that hybridization signals were observed in all regions of a pair of the smallest alien chromosomes and the pericentromeric area of another pair of alien chromosomes in TAi-27, indicating that the probe from microdissected chromosome is species specific. In Th. intermedium, 14 chromosomes had wide and strong hybridization signals distributed mainly on the pericentromere area and 9 chromosomes with narrow and weak signals on the pericentromere area. The remaining chromosomes displayed a very weak or no signal. Sequential FISH/GISH on Th. intermedium chromosomes using the DNAs of microdissected chromosome, Pseudoroegneria spicata (St genome) and pDbH12 (a J(s) genome specific probe) as the probes indicated that the microdissected chromosome belonged to the St genome, three genomes (J(s) , J and St) in Th. intermedium could be distinguished, in which there is no hybridization signal on J genome that is similar to the genome of Th. bessarabicum. Our results showed that the smallest alien chromosomes may represent a truncated chromosome and the repetitive sequence distribution might be similar in different chromosomes within the St genome. However, the repetitive sequence distributions are different within the J(s) genome, within a single chromosome, and among different genomes in Th. intermedium. Our results suggested that chromosome painting could be feasible in some plants and useful in detecting chromosome variation and repetitive sequence distribution in different genomes of polyploidy plants, which is helpful for understanding the evolution of different

  15. Microdissection and chromosome painting of the alien chromosome in an addition line of wheat--Thinopyrum intermedium.

    Directory of Open Access Journals (Sweden)

    Chuanliang Deng

    Full Text Available In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat--Thinopyrum intermedium addition line, and the chromosomes of the three different genomes of Th. Intermedium. The smallest alien chromosome of TAi-27 was microdissected and its DNA amplified by DOP-PCR was used as a probe to hybridize with metaphase chromosomes of TAi-27 and Th. intermedium. Results showed that hybridization signals were observed in all regions of a pair of the smallest alien chromosomes and the pericentromeric area of another pair of alien chromosomes in TAi-27, indicating that the probe from microdissected chromosome is species specific. In Th. intermedium, 14 chromosomes had wide and strong hybridization signals distributed mainly on the pericentromere area and 9 chromosomes with narrow and weak signals on the pericentromere area. The remaining chromosomes displayed a very weak or no signal. Sequential FISH/GISH on Th. intermedium chromosomes using the DNAs of microdissected chromosome, Pseudoroegneria spicata (St genome and pDbH12 (a J(s genome specific probe as the probes indicated that the microdissected chromosome belonged to the St genome, three genomes (J(s , J and St in Th. intermedium could be distinguished, in which there is no hybridization signal on J genome that is similar to the genome of Th. bessarabicum. Our results showed that the smallest alien chromosomes may represent a truncated chromosome and the repetitive sequence distribution might be similar in different chromosomes within the St genome. However, the repetitive sequence distributions are different within the J(s genome, within a single chromosome, and among different genomes in Th. intermedium. Our results suggested that chromosome painting could be feasible in some plants and useful in detecting chromosome variation and repetitive sequence distribution in different genomes of polyploidy plants, which is helpful for understanding the evolution of

  16. The Role of Epibionts of Bacteria of the Genus Pseudoalteromonas and Cellular Proteasomes in the Adaptive Plasticity of Marine Cold-Water Sponges.

    Science.gov (United States)

    Kravchuk, O I; Lavrov, A I; Finoshin, A D; Gornostaev, N G; Georgiev, A A; Abaturova, S B; Mikhailov, V S; Lyupina, Yu V

    2018-03-01

    It was found that cells of different color morphs of the cold-water marine sponges Halichondria panicea (Pallas, 1766) of the class Demospongiae differ in the content of epibionts of bacteria of the genus Pseudoalteromonas. The sponge cells with elevated levels of epibionts of bacteria of the genus Pseudoalteromonas showed an increased expression of Hsp70 proteins but had a reduced level of the proteasomal catalytic beta 5 subunit, which was accompanied by a change in their activity. Probably, epibionts of bacteria of the genus Pseudoalteromonas may affect the ubiquitin-proteasome system in the cells of cold-water marine sponges and, thereby, ensure their adaptive plasticity.

  17. Microdissection and chromosome painting of the alien chromosome in an addition line of wheat-Thinopyrum intermedium

    Science.gov (United States)

    The chromosome painting is an efficient tool for chromosome research. However, plant chromosome painting is relatively underdeveloped. In this study, chromosome painting was developed and used to identify alien chromosomes in TAi-27, a wheat-Thinopyrum intermedium addition line, and chromosomes of...

  18. Cloning of resistance gene analogs located on the alien chromosome in an addition line of wheat-Thinopyrum intermedium.

    Science.gov (United States)

    Jiang, Shu-Mei; Hu, Jun; Yin, Wei-Bo; Chen, Yu-Hong; Wang, Richard R-C; Hu, Zan-Min

    2005-09-01

    Homology-based gene/gene-analog cloning method has been extensively applied in isolation of RGAs (resistance gene analogs) in various plant species. However, serious interference of sequences on homoeologous chromosomes in polyploidy species usually occurred when cloning RGAs in a specific chromosome. In this research, the techniques of chromosome microdissection combined with homology-based cloning were used to clone RGAs from a specific chromosome of Wheat-Thinopyrum alien addition line TAi-27, which was derived from common wheat and Thinopyrum intermedium with a pair of chromosomes from Th. intermedium. The alien chromosomes carry genes for resistance to BYDV. The alien chromosome in TAi-27 was isolated by a glass needle and digested with proteinase K. The DNA of the alien chromosome was amplified by two rounds of Sau3A linker adaptor-mediated PCR. RGAs were amplified by PCR with the degenerated primers designed based on conserved domains of published resistance genes (R genes) by using the alien chromosome DNA, genomic DNA and cDNA of Th. intermedium, TAi-27 and 3B-2 (a parent of TAi-27) as templates. A total of seven RGAs were obtained and sequenced. Of which, a constitutively expressed single-copy NBS-LRR type RGA ACR 3 was amplified from the dissected alien chromosome of TAi-27, TcDR 2 and TcDR 3 were from cDNA of Th. intermedium, AcDR 3 was from cDNA of TAi-27, FcDR 2 was from cDNA of 3B-2, AR 2 was from genomic DNA of TAi-27 and TR 2 was from genomic DNA of Th. intermedium. Sequence homology analyses showed that the above RGAs were highly homologous with known resistance genes or resistance gene analogs and belonged to NBS-LRR type of R genes. ACR 3 was recovered by PCR from genomic DNA and cDNA of Th. intermedium and TAi-27, but not from 3B-2. Southern hybridization using the digested genomic DNA of Th. intermedium, TAi-27 and 3B-2 as the template and ACR 3 as the probe showed that there is only one copy of ACR 3 in the genome of Th. intermedium and TAi

  19. Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites.

    Science.gov (United States)

    Durand, Lucile; Roumagnac, Marie; Cueff-Gauchard, Valérie; Jan, Cyrielle; Guri, Mathieu; Tessier, Claire; Haond, Marine; Crassous, Philippe; Zbinden, Magali; Arnaud-Haond, Sophie; Cambon-Bonavita, Marie-Anne

    2015-10-01

    Rimicaris exoculata is a deep-sea hydrothermal vent shrimp whose enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystem megafauna along the Mid-Atlantic Ridge, regardless of contrasting geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow, TAG, Logatchev and Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (transmission electron microscopy, scanning electron microscopy and fluorescence in situ hybridization analyses). Filamentous epibionts inserted between the epithelial cell microvilli were observed on all examined samples. Results confirmed resident gut community affiliation to Deferribacteres, Mollicutes, Epsilonproteobacteria and to a lesser extent Gammaproteobacteria lineages. Still a single Deferribacteres phylotype was retrieved at all sites. Four Mollicutes-related operational taxonomic units were distinguished, one being only identified on Rainbow specimens. The topology of ribotype median-joining networks illustrated a community diversification possibly following demographic expansions, suggesting a more ancient evolutionary history and/or a larger effective population size at Rainbow. Finally, the gill chamber community distribution was also analysed through ribotype networks based on sequences from R. exoculata collected at the Rainbow, Snake Pit, TAG, Logatchev and Ashadze sites. Results allow the refining of hypotheses on the epibiont role and transmission pathways. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  20. A metagenome for lacustrine Cladophora (Cladophorales) reveals remarkable diversity of eukaryotic epibionts and genes relevant to materials cycling.

    Science.gov (United States)

    Graham, Linda E; Knack, Jennifer J; Graham, Melissa E; Graham, James M; Zulkifly, Shahrizim

    2015-06-01

    Periphyton dominated by the cellulose-rich filamentous green alga Cladophora forms conspicuous growths along rocky marine and freshwater shorelines worldwide, providing habitat for diverse epibionts. Bacterial epibionts have been inferred to display diverse functions of biogeochemical significance: N-fixation and other redox reactions, phosphorus accumulation, and organic degradation. Here, we report taxonomic diversity of eukaryotic and prokaryotic epibionts and diversity of genes associated with materials cycling in a Cladophora metagenome sampled from Lake Mendota, Dane Co., WI, USA, during the growing season of 2012. A total of 1,060 distinct 16S, 173 18S, and 351 28S rRNA operational taxonomic units, from which >220 genera or species of bacteria (~60), protists (~80), fungi (6), and microscopic metazoa (~80), were distinguished with the use of reference databases. We inferred the presence of several algal taxa generally associated with marine systems and detected Jaoa, a freshwater periphytic ulvophyte previously thought endemic to China. We identified six distinct nifH gene sequences marking nitrogen fixation, >25 bacterial and eukaryotic cellulases relevant to sedimentary C-cycling and technological applications, and genes encoding enzymes in aerobic and anaerobic pathways for vitamin B12 biosynthesis. These results emphasize the importance of Cladophora in providing habitat for microscopic metazoa, fungi, protists, and bacteria that are often inconspicuous, yet play important roles in ecosystem biogeochemistry. © 2015 Phycological Society of America.

  1. The first finding of Ostrea cf. puelchana (Bivalvia living as epibiont on Callinectes exasperates (Decapoda

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    Silvio Felipe Barbosa Lima

    2017-05-01

    Full Text Available This paper describes the epibiosis of Ostrea cf. puelchana on Callinectes exasperatus (Gerstaecker, 1856, both collected from the estuary of the Paraíba River, in the state of Paraíba, northeastern Brazil. The basibiont crab was captured using a trap installed in mangrove area at a depth of about 2 meters. The oyster was closely attached to the left side of dorsal carapace covering most of the epibranchial, mesobranchial and metabranchial regions. Possible advantages and disadvantages for both the epibiont and the basibiont are discussed. We believe that young O. cf. puelchana may avoid a variety of potential predators due to the considerable movement capacity of C. exasperatus and may also serve as a small protective shield for the basibiont. However, the oyster, which is a bivalve with an epifaunal lifestyle, is likely to be negatively affected, mainly due to burrowing activity of the crab. This is the first record of epibiosis between bivalves of the genus Ostrea Linnaeus, 1758 and crabs of the genus Callinectes Stimpson, 1860.

  2. Analysis of epibiont data in relation with the Debilitated Turtle Syndrome of sea turtles in Chelonia mydas and Lepidochelys olivacea from Concepción coast, Chile

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    Italo Fernández

    2015-11-01

    Full Text Available Epibionts on the surface of the skin and shell of a specimen of Chelonia mydas and three Lepidochelys olivacea found floating on the coast of Concepción, Chile, between June 2010 and December 2012, were analyzed. These epibionts were analyzed during the clinical inspection and the tissue changes related to its settlement, with filamentous algae around, were observed. Subsequently, the epibionts were identified by morphological observation. The knowledge about theses epibionts in Chile is reviewed and the potential occurrence of Debilitated Turtle Syndrome (DTS in these turtles is discussed. The presence of sea turtles in the Chilean coast is considered a casual event, so there is little information on this issue. We propose it is necessary to carry out more studies on the association between turtles and epibionts because their identification, colonizing reptiles’ surface may give relevant information to a better understanding of different diseases, including DTS, that affect these marine reptiles and facilitates the development of strategies intended to recover their populations.

  3. Intoxicação natural por Cestrum intermedium em bovinos no Rio Grande do Sul, Brasil Spontaneous poisoning by Cestrum intermedium in cattle in Rio Grande do Sul, Brazil

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    Paulo Mota Bandarra

    2009-02-01

    Full Text Available Em junho de 2007, uma mortalidade de bovinos com sinais clínicos e lesões de insuficiência hepática aguda em uma propriedade, na região da encosta da serra do Rio Grande do Sul, foi atribuída ao consumo de Cestrum intermedium. De um total de 17 bovinos, dois morreram com curso clínico inferior a 12 horas, apresentando tremores musculares, andar cambaleante, reações agressivas, decúbito lateral e morte. À necropsia, o fígado estava moderadamente aumentado de volume e com acentuação do padrão lobular. Histologicamente, o fígado apresentava necrose de coagulação centrolobular, difusa, aguda e acentuada. As alterações patológicas associadas à presença e a evidência de consumo da planta pelos bovinos permitiram o diagnóstico.In June of 2007, mortality in cattle with clinical signs and lesions of acute hepatic insufficiency on a farm located in the hillside of Rio Grande do Sul mountain range was attributed to Cestrum intermedium consumption. From 17 bovines, two died up to 12 hours presenting clinical signs such as muscular tremors, incoordination, aggressiveness, lateral recumbence and death. Macroscopic lesions were found primary in the liver and were characterized by a slightly increased volume and diffuse accentuation of the lobules. Microscopically, the liver showed diffuse and accentuated centrilobular coagulative necrosis. The presence of Cestrum intermedium plants that was being ingested by the bovine associated with the hepatic lesions was decisive for the diagnosis.

  4. Paleoecology and environments of bioestromes and path reefs , its ostreid , enhdolith and epibionts ( Camacho formation - middle upper Miocene; Uruguay)

    International Nuclear Information System (INIS)

    Sprechmann, P.; Verde, M.; Martinez, S.; Gaucher, C.

    1998-01-01

    A special lithofacies of the Camacho formation (Middle-Upper Miocene, Uruguay), exposed at Puerto Arazati, is studied from a sedimentologic and paleontologic point of view. Ostreid biostromes and patch reefs show different kinds of growings patterns. Two kinds of ostreid concentration s, biogenic and sedimentologic were distinguished in Puerto Arazati based on taphonomic evidence. Endolith association and epibionts from biostrome and patch reef hardgrounds were also analysed in Puerto Arazati. Both sedimentologic and paleontologic evidence indicates a free of sediment, shallow water depositional environment, in the photic zone. Complementary data about endoliths from other outcrops of the Camacho Formation are included (author)

  5. Mapping of Powdery Mildew Resistance Gene pmCH89 in a Putative Wheat-Thinopyrum intermedium Introgression Line.

    Science.gov (United States)

    Hou, Liyuan; Zhang, Xiaojun; Li, Xin; Jia, Juqing; Yang, Huizhen; Zhan, Haixian; Qiao, Linyi; Guo, Huijuan; Chang, Zhijian

    2015-07-28

    Powdery mildew, caused by Blumeria graminis f. sp. tritici (Bgt), is a globally serious disease adversely affecting wheat production. The Bgt-resistant wheat breeding line CH09W89 was derived after backcrossing a Bgt resistant wheat-Thinopyrum intermedium partial amphiploid TAI7045 with susceptible wheat cultivars. At the seedling stage, CH09W89 exhibited immunity or high resistance to Bgt pathotypes E09, E20, E21, E23, E26, Bg1, and Bg2, similar to its donor line TAI7045 and Th. intermedium. No Th. intermedium chromatin was detected based on genomic in situ hybridization of mitotic chromosomes. To determine the mode of inheritance of the Bgt resistance and the chromosomal location of the resistance gene, CH09W89 was crossed with two susceptible wheat cultivars. The results of the genetic analysis showed that the adult resistance to Bgt E09 in CH09W89 was controlled by a single recessive gene, which was tentatively designated as pmCH89. Two polymorphic SSR markers, Xwmc310 and Xwmc125, were linked to the resistance gene with genetic distances 3.1 and 2.7 cM, respectively. Using the Chinese Spring aneuploid and deletion lines, the resistance gene and its linked markers were assigned to chromosome arm 4BL in the bin 0.68-0.78. Due to its unique position on chromosome 4BL, pmCH89 appears to be a new locus for resistance to powdery mildew. These results will be of benefit for improving powdery mildew resistance in wheat breeding programs.

  6. Mapping of Powdery Mildew Resistance Gene pmCH89 in a Putative Wheat-Thinopyrum intermedium Introgression Line

    Directory of Open Access Journals (Sweden)

    Liyuan Hou

    2015-07-01

    Full Text Available Powdery mildew, caused by Blumeria graminis f. sp. tritici (Bgt, is a globally serious disease adversely affecting wheat production. The Bgt-resistant wheat breeding line CH09W89 was derived after backcrossing a Bgt resistant wheat-Thinopyrum intermedium partial amphiploid TAI7045 with susceptible wheat cultivars. At the seedling stage, CH09W89 exhibited immunity or high resistance to Bgt pathotypes E09, E20, E21, E23, E26, Bg1, and Bg2, similar to its donor line TAI7045 and Th. intermedium. No Th. intermedium chromatin was detected based on genomic in situ hybridization of mitotic chromosomes. To determine the mode of inheritance of the Bgt resistance and the chromosomal location of the resistance gene, CH09W89 was crossed with two susceptible wheat cultivars. The results of the genetic analysis showed that the adult resistance to Bgt E09 in CH09W89 was controlled by a single recessive gene, which was tentatively designated as pmCH89. Two polymorphic SSR markers, Xwmc310 and Xwmc125, were linked to the resistance gene with genetic distances 3.1 and 2.7 cM, respectively. Using the Chinese Spring aneuploid and deletion lines, the resistance gene and its linked markers were assigned to chromosome arm 4BL in the bin 0.68–0.78. Due to its unique position on chromosome 4BL, pmCH89 appears to be a new locus for resistance to powdery mildew. These results will be of benefit for improving powdery mildew resistance in wheat breeding programs.

  7. Peritrich epibionts on the hadal isopod species Macrostylis marionae n. sp. from the Puerto Rico Trench used as indicator for sex-specific behaviour

    Science.gov (United States)

    Kniesz, Katharina; Brandt, Angelika; Riehl, Torben

    2018-02-01

    Macrostylis marionae n. sp. is described by means of integrative taxonomy. It is the second isopod species (Crustacea) described from the hadal Puerto Rico Trench. It differs from other Macrostylidae (Janiroidea) predominantly by the lack of the tergal borders between the fossosome segments. Adult males of M. marionae n. sp. differed from females and juveniles of both sexes in a higher number of peritrich ciliate epibionts. In total, 64.3% of adult males and only 10.5% of adult females were infested. Because macrostylids are generally considered infaunal, with a digging lifestyle, while peritrichs require aquatic medium for filter feeding, this observed pattern led to the hypothesis of a behavioural sexual dimorphism in this species of Macrostylidae. Accordingly, the epibionts may prefer adult male macrostylids as basibionts because of a rather epifaunal and roaming lifestyle. In contrast they may avoid females due to a stationary and infaunal behaviour. Additionally, the stage progression of the M. marionae male ontogeny was reconstructed.

  8. Corispermum intermedium, C. hyssopifolium un C. leptopterum augu sabiedrības, to ietekmējošie faktori un taksonu radniecība

    OpenAIRE

    Peipiņa, Ieva

    2015-01-01

    Latvijas endēmam Corispermum intermedium un svešzemju sugām C. hyssopifolium ar C. leptopterum ir ļoti līdzīga gan morfoloģija, gan ekoloģiskie apstākļi. Literatūrā trūkst datu par Corispermum augu sabiedrībām un to sastopamības noteicošajiem ekoloģiskajiem faktoriem. Maģistra darba mērķis – noteikt jūras piekrastes smiltājos sastopamo kamieļzāļu augu sabiedrību piederību un to ietekmējošos faktorus, kā arī C. intermedium, C. hyssopifolium un C. leptopterum radniecību. Corispermum augu ...

  9. Biopesticide activity of sugarcane associated rhizobacteria: Ochrobactrum intermedium strain NH-5 and Stenotrophomonas maltophilia strain NH-300 against red rot under field conditions

    Directory of Open Access Journals (Sweden)

    Muhammad Nadeem HASSAN

    2014-09-01

    Full Text Available Colletotrichum falcatum is the major fungal pathogen causing sugarcane red rot. Four antagonistic bacterial strains exhibiting biocontrol activity against this pathogen in greenhouse conditions were characterized for production of different antifungal metabolites and biocontrol determinants to elucidate the mechanism of action involved in their antagonistic activity. The strains were also evaluated under field conditions to assess their biocontrol potential. All the strains produced hydrogen cyanide (HCN, and volatile and diffusible antibiotics. In addition, the Ochrobactrum intermedium strain NH-5 produced siderophores and the broad spectrum antibiotic 2, 4-diacetylphloroglucinol (2,4-DAPG; Pseudomonas sp. NH-203 produced siderophores, and Pseudomonas sp. NH-276 produced protease. Two strains, Ochrobactrum intermedium NH-5 and Stenotrophomonas maltophilia NH-300, exhibited good biocontrol activity, suppressing red rot by 44–52% on two sugarcane varieties, SPF-234 and Co-1148, in field experiments. The strains gave consistent results in three consecutive years and showed potential to be used as biopesticides.

  10. New molecular markers and cytogenetic probes enable chromosome identification of wheat-Thinopyrum intermedium introgression lines for improving protein and gluten contents.

    Science.gov (United States)

    Li, Guangrong; Wang, Hongjin; Lang, Tao; Li, Jianbo; La, Shixiao; Yang, Ennian; Yang, Zujun

    2016-10-01

    New molecular markers were developed for targeting Thinopyrum intermedium 1St#2 chromosome, and novel FISH probe representing the terminal repeats was produced for identification of Thinopyrum chromosomes. Thinopyrum intermedium has been used as a valuable resource for improving the disease resistance and yield potential of wheat. A wheat-Th. intermedium ssp. trichophorum chromosome 1St#2 substitution and translocation has displayed superior grain protein and wet gluten content. With the aim to develop a number of chromosome 1St#2 specific molecular and cytogenetic markers, a high throughput, low-cost specific-locus amplified fragment sequencing (SLAF-seq) technology was used to compare the sequences between a wheat-Thinopyrum 1St#2 (1D) substitution and the related species Pseudoroegneria spicata (St genome, 2n = 14). A total of 5142 polymorphic fragments were analyzed and 359 different SLAF markers for 1St#2 were predicted. Thirty-seven specific molecular markers were validated by PCR from 50 randomly selected SLAFs. Meanwhile, the distribution of transposable elements (TEs) at the family level between wheat and St genomes was compared using the SLAFs. A new oligo-nucleotide probe named Oligo-pSt122 from high SLAF reads was produced for fluorescence in situ hybridization (FISH), and was observed to hybridize to the terminal region of 1St#L and also onto the terminal heterochromatic region of Th. intermedium genomes. The genome-wide markers and repetitive based probe Oligo-pSt122 will be valuable for identifying Thinopyrum chromosome segments in wheat backgrounds.

  11. Mixed Cutaneous Infection Caused by Mycobacterium szulgai and Mycobacterium intermedium in a Healthy Adult Female: A Rare Case Report

    Directory of Open Access Journals (Sweden)

    Amresh Kumar Singh

    2015-01-01

    Full Text Available Nontuberculous mycobacteria (NTMs are ubiquitous and are being increasingly reported as human opportunistic infection. Cutaneous infection caused by mixed NTM is extremely rare. We encountered the case of a 46-year-old female, who presented with multiple discharging sinuses over the lower anterior abdominal wall (over a previous appendectomy scar for the past 2 years. Microscopy and culture of the pus discharge were done to isolate and identify the etiological agent. Finally, GenoType Mycobacterium CM/AS assay proved it to be a mixed infection caused by Mycobacterium szulgai and M. intermedium. The patient was advised a combination of rifampicin 600 mg once daily, ethambutol 600 mg once daily, and clarithromycin 500 mg twice daily to be taken along with periodic follow-up based upon clinical response as well as microbiological response. We emphasize that infections by NTM must be considered in the etiology of nonhealing wounds or sinuses, especially at postsurgical sites.

  12. Turtle cleaners: reef fishes foraging on epibionts of sea turtles in the tropical Southwestern Atlantic, with a summary of this association type

    Directory of Open Access Journals (Sweden)

    Cristina Sazima

    Full Text Available In the present study we record several instances of reef fish species foraging on epibionts of sea turtles (cleaning symbiosis at the oceanic islands of Fernando de Noronha Archipelago and near a shipwreck, both off the coast of Pernambuco State, northeast Brazil. Nine reef fish species and three turtle species involved in cleaning are herein recorded. Besides our records, a summary of the literature on this association type is presented. Postures adopted by turtles during the interaction are related to the habits of associated fishes. Feeding associations between fishes and turtles seem a localized, albeit common, phenomenon.

  13. Differential responses of calcifying and non-calcifying epibionts of a brown macroalga to present-day and future upwelling pCO2.

    Directory of Open Access Journals (Sweden)

    Vincent Saderne

    Full Text Available Seaweeds are key species of the Baltic Sea benthic ecosystems. They are the substratum of numerous fouling epibionts like bryozoans and tubeworms. Several of these epibionts bear calcified structures and could be impacted by the high pCO2 events of the late summer upwellings in the Baltic nearshores. Those events are expected to increase in strength and duration with global change and ocean acidification. If calcifying epibionts are impacted by transient acidification as driven by upwelling events, their increasing prevalence could cause a shift of the fouling communities toward fleshy species. The aim of the present study was to test the sensitivity of selected seaweed macrofoulers to transient elevation of pCO2 in their natural microenvironment, i.e. the boundary layer covering the thallus surface of brown seaweeds. Fragments of the macroalga Fucus serratus bearing an epibiotic community composed of the calcifiers Spirorbis spirorbis (Annelida and Electra pilosa (Bryozoa and the non-calcifier Alcyonidium hirsutum (Bryozoa were maintained for 30 days under three pCO2 conditions: natural 460 ± 59 µatm, present-day upwelling1193 ± 166 µatm and future upwelling 3150 ± 446 µatm. Only the highest pCO2 caused a significant reduction of growth rates and settlement of S. spirorbis individuals. Additionally, S. spirorbis settled juveniles exhibited enhanced calcification of 40% during daylight hours compared to dark hours, possibly reflecting a day-night alternation of an acidification-modulating effect by algal photosynthesis as opposed to an acidification-enhancing effect of algal respiration. E. pilosa colonies showed significantly increased growth rates at intermediate pCO2 (1193 µatm but no response to higher pCO2. No effect of acidification on A. hirsutum colonies growth rates was observed. The results suggest a remarkable resistance of the algal macro-epibionts to levels of acidification occurring at present day upwellings in the Baltic

  14. Turtle cleaners: reef fishes foraging on epibionts of sea turtles in the tropical Southwestern Atlantic, with a summary of this association type

    Directory of Open Access Journals (Sweden)

    Cristina Sazima

    2010-03-01

    Full Text Available In the present study we record several instances of reef fish species foraging on epibionts of sea turtles (cleaning symbiosis at the oceanic islands of Fernando de Noronha Archipelago and near a shipwreck, both off the coast of Pernambuco State, northeast Brazil. Nine reef fish species and three turtle species involved in cleaning are herein recorded. Besides our records, a summary of the literature on this association type is presented. Postures adopted by turtles during the interaction are related to the habits of associated fishes. Feeding associations between fishes and turtles seem a localized, albeit common, phenomenon.No presente estudo registramos diversos episódios de peixes recifais alimentando-se de epibiontes sobre o corpo de tartarugas marinhas (simbiose de limpeza nas ilhas oceânicas do arquipélago de Fernando de Noronha e próximo a um naufrágio na costa de Pernambuco, nordeste do Brasil. Nove espécies de peixes recifais e três espécies de tartarugas envolvidas nas associações são aqui registradas. Além de nossos registros, apresentamos também um resumo da literatura sobre o tema. As posturas adotadas pelas tartarugas durante as interações estão relacionadas com os hábitos dos peixes associados. Associações alimentares entre peixes e tartarugas podem ser consideradas como um fenômeno local, embora comum.

  15. Distribution of a Ty3/gypsy-like retroelement on the A and B-chromosomes of Cestrum strigilatum Ruiz & Pav. and Cestrum intermedium Sendtn. (Solanaceae

    Directory of Open Access Journals (Sweden)

    Jéferson Nunes Fregonezi

    2007-01-01

    Full Text Available Retroelements are a diversified fraction of eukaryotic genomes, with the Ty1/copia and Ty3/gypsy groups being very common in a large number of plant genomes. We isolated an internal segment of the Ty3/gypsy retroelement of Cestrum strigilatum (Solanaceae using PCR amplification with degenerate primers for a conserved region of reverse transcriptase. The isolated segment (pCs12 was sequenced and showed similarity with Ty3/gypsy retroelements of monocotyledons and dicotyledons. This segment was used as probe in chromosomes of C. strigilatum and Cestrum intermedium. Diffuse hybridization signals were observed along the chromosomes and more accentuated terminal signals in some chromosome pairs, always associated with nucleolus organizer regions (NORs. The physical relationship between the hybridization sites of pCs12 and pTa71 ribosomal probes was assessed after sequential fluorescence in situ hybridization (FISH. Hybridization signals were also detected in the B chromosomes of these species, indicating an entail among the chromosomes of A complement and B-chromosomes.

  16. Beneficial role of hydrophytes in removing Cr(VI) from wastewater in association with chromate-reducing bacterial strains Ochrobactrum intermedium and Brevibacterium.

    Science.gov (United States)

    Faisal, Muhammad; Hasnain, Shahida

    2005-01-01

    This study deals with the use of three chromium-resistant bacterial strains (Ochrobactrum intermedium CrT-1, Brevibacterium CrT-13, and CrM-1) in conjunction with Eichornia crassipes for the removal of toxic chromium from wastewater. Bacterial strains resulted in reduced uptake of chromate into inoculated plants as compared to noninoculated control plants. In the presence of different heavy metals, chromium uptake into the plants was 28.7 and 7.15% less at an initial K2CrO4 concentration of 100 and 500 microg ml(-1) in comparison to a metal free chromium solution. K2CrO4 uptake into the plant occurred at different pHs tested, but maximum uptake was observed at pH 5. Nevertheless, the bacterial strains caused some decrease in chromate uptake into the plants, but the combined effect of plants and bacterial strains conduce more removal of Cr(VI) from the solution.

  17. Variación espacio-temporal de la comunidad de macroinvertebrados epibiontes en las raíces del mangle rojo Rhizophora mangle (Rhizophoraceae en la laguna costera de La Mancha, Veracruz, México

    Directory of Open Access Journals (Sweden)

    Marcela Ruiz

    2014-12-01

    Full Text Available La laguna de La Mancha está conectada al Golfo de México a través de una boca estuarina efímera, una barra arenosa, la cual se abre durante la época de lluvias y se cierra durante el otoño y la temporada de vientos invernales. Cuando la laguna se llena con la entrada de agua proveniente de un arroyo permanente, ubicado en la parte sur, el nivel del agua se incrementa y la barra arenosa se abre, descargando grandes volúmenes de agua hacia el océano y dejando expuesta a la desecación la zona intermareal previamente inundada. En este estudio, se describen las variaciones espacio-temporales de la estructura y composición de la comunidad de epibiontes que vive en la superficie de las raíces del mangle rojo,y su relación con la dinámica hidrológica de la boca estuarina. Se recolectaron cuatro raíces trimestralmente, durante un año, en diez estaciones de muestreo. También se midió la temperatura del agua, salinidad, oxígeno disuelto, profundidad y transparencia en cada muestreo. Se determinó la abundancia, la biomasa y la riqueza específica, a lo largo de las raíces en segmentos verticales de 10cm llamados horizontes. Se registraron un total de 59 632 especímenes y una biomasa total de 172g/cm2, y un máximo de once horizontes presentaron al menos una especie de epibionte. Se identificaron dos especies de poliquetos, 12 de moluscos y 14 de crustáceos, siendo Mytilopsis leucophaeata la más abundante, Ficopomatus miamiensis la más común y Crassostrea rhizophorae la de mayor contribución a la biomasa. Se evaluó la eficiencia del muestreo mediante curvas de acumulación de especies, resultando que la eficiencia fue, en general, >90% de la riqueza estimada por modelos asintóticos. La hidrodinámica de la boca estuarina tuvo gran influencia en las condiciones ambientales de la laguna y en las variaciones espacio-temporales de la comunidad de epibiontes: (a cuando la boca estuarina está cerrada son más claros los gradientes

  18. Transgenic wheat expressing Thinopyrum intermedium MYB transcription factor TiMYB2R-1 shows enhanced resistance to the take-all disease.

    Science.gov (United States)

    Liu, Xin; Yang, Lihua; Zhou, Xianyao; Zhou, Miaoping; Lu, Yan; Ma, Lingjian; Ma, Hongxiang; Zhang, Zengyan

    2013-05-01

    The disease take-all, caused by the fungus Gaeumannomyces graminis, is one of the most destructive root diseases of wheat worldwide. Breeding resistant cultivars is an effective way to protect wheat from take-all. However, little progress has been made in improving the disease resistance level in commercial wheat cultivars. MYB transcription factors play important roles in plant responses to environmental stresses. In this study, an R2R3-MYB gene in Thinopyrum intermedium, TiMYB2R-1, was cloned and characterized. The gene sequence includes two exons and an intron. The expression of TiMYB2R-1 was significantly induced following G. graminis infection. An in vitro DNA binding assay proved that TiMYB2R-1 protein could bind to the MYB-binding site cis-element ACI. Subcellular localization assays revealed that TiMYB2R-1 was localized in the nucleus. TiMYB2R-1 transgenic wheat plants were generated, characterized molecularly, and evaluated for take-all resistance. PCR and Southern blot analyses confirmed that TiMYB2R-1 was integrated into the genomes of three independent transgenic wheat lines by distinct patterns and the transgene was heritable. Reverse transcription-PCR and western blot analyses revealed that TiMYB2R-1 was highly expressed in the transgenic wheat lines. Based on disease response assessments for three successive generations, the significantly enhanced resistance to take-all was observed in the three TiMYB2R-1-overexpressing transgenic wheat lines. Furthermore, the transcript levels of at least six wheat defence-related genes were significantly elevated in the TiMYB2R-1 transgenic wheat lines. These results suggest that engineering and overexpression of TiMYB2R-1 may be used for improving take-all resistance of wheat and other cereal crops.

  19. Density, size structure, shell orientation and epibiontic colonization of the fan mussel Pinna nobilis L. 1758 (Mollusca: Bivalvia in three contrasting habitats in an estuarine area of Sardinia (W Mediterranean

    Directory of Open Access Journals (Sweden)

    Piero Addis

    2009-03-01

    Full Text Available We investigated the spatial distribution, size structure, shell orientation and valve colonization by epibionts of the endangered Mediterranean bivalve Pinna nobilis in three continuous but different habitats in the Gulf of Oristano (Sardinia, western Mediterranean. The sampling stations chosen were: an estuarine area (E of coastal salt-marshes characterized by unvegetated sea-bottoms; and two areas in a seagrass meadow characterized by an extensive Posidonia oceanica meadow (Mw and patched mixed meadows of P. oceanica and Cymodocea nodosa (Me. We found significant differences in mean densities among stations and the highest value was found in the estuarine area. Shell orientation showed that there was uniform circular distribution of specimens in the Mw station and a unimodal distribution in the Me and E stations, where specimens were set at 0°N and 10°NNE, which is a pattern related to sea drift. Shell epibiosis displayed differences between habitats. The highest valve colonization was in the estuary, with filamentous dark algae and Ostrea edulis reaching almost 90 percent of shell coverage. This study provides new information on habitat preferences and data for assessing local populations of P. nobilis that is useful for its conservation and improving the knowledge of its ecology.

  20. Contrasting patterns of evolution of 45S and 5S rDNA families uncover new aspects in the genome constitution of the agronomically important grass Thinopyrum intermedium (Triticeae).

    Science.gov (United States)

    Mahelka, Václav; Kopecky, David; Baum, Bernard R

    2013-09-01

    We employed sequencing of clones and in situ hybridization (genomic and fluorescent in situ hybridization [GISH and rDNA-FISH]) to characterize both the sequence variation and genomic organization of 45S (herein ITS1-5.8S-ITS2 region) and 5S (5S gene + nontranscribed spacer) ribosomal DNA (rDNA) families in the allohexaploid grass Thinopyrum intermedium. Both rDNA families are organized within several rDNA loci within all three subgenomes of the allohexaploid species. Both families have undergone different patterns of evolution. The 45S rDNA family has evolved in a concerted manner: internal transcribed spacer (ITS) sequences residing within the arrays of two subgenomes out of three got homogenized toward one major ribotype, whereas the third subgenome contained a minor proportion of distinct unhomogenized copies. Homogenization mechanisms such as unequal crossover and/or gene conversion were coupled with the loss of certain 45S rDNA loci. Unlike in the 45S family, the data suggest that neither interlocus homogenization among homeologous chromosomes nor locus loss occurred in 5S rDNA. Consistently with other Triticeae, the 5S rDNA family in intermediate wheatgrass comprised two distinct array types-the long- and short-spacer unit classes. Within the long and short units, we distinguished five and three different types, respectively, likely representing homeologous unit classes donated by putative parental species. Although the major ITS ribotype corresponds in our phylogenetic analysis to the E-genome species, the minor ribotype corresponds to Dasypyrum. 5S sequences suggested the contributions from Pseudoroegneria, Dasypyrum, and Aegilops. The contribution from Aegilops to the intermediate wheatgrass' genome is a new finding with implications in wheat improvement. We discuss rDNA evolution and potential origin of intermediate wheatgrass.

  1. Tumour-like anomaly of copepods-an evaluation of the possible causes in Indian marine waters.

    Science.gov (United States)

    Jagadeesan, L; Jyothibabu, R

    2016-04-01

    Globally, tumour-like anomalies (TLA) in copepods and the critical assessment of their possible causes are rare. The exact causative factor and ecological consequences of TLA in copepods are still unclear and there is no quantitative data available so far to prove conclusively the mechanism involved in developing TLA in copepods. TLA in copepods are considered as a potential threat to the well-being of the aquatic food web, which prompted us to assess these abnormalities in Indian marine waters and assess the possible etiological agents. We carried out a focused study on copepods collected from 10 estuarine inlets and five coastal waters of India using a FlowCAM, advanced microscopes and laboratory-incubated observations. The analysis confirmed the presence of TLA in copepods with varying percentage of incidence in different environments. TLA was recorded in 24 species of copepods, which constituted ~1-15 % of the community in different environments. TLA was encountered more frequently in dominant copepods and exhibited diverse morphology; ~60 % was round, dark and granular, whereas ~20 % was round/oval, transparent and non-granular. TLA was mostly found in the dorsal and lateral regions of the prosome of copepods. The three suggested reasons/assumptions about the causes of TLA such as ecto-parasitism (Ellobiopsis infection), endo-parasitism (Blastodinium infection) and epibiont infections (Zoothamnium and Acineta) were assessed in the present study. We did find infections of endo-parasite Blastodinium, ecto-parasite Ellobiopsis and epibiont Zoothamnium and Acineta in copepods, but these infectious percentages were found <1.5 % to the total density and most of them are species specific. Detailed microscopical observations of the samples collected and the results of the incubation experiments of infected copepods revealed that ecto-parasitism, endo-parasitism and epibiont infections have less relevance to the formation of TLA in copepods. On the other hand

  2. Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores.

    Directory of Open Access Journals (Sweden)

    Laurent Barillé

    Full Text Available The Pacific oyster, Crassostrea gigas (Thunberg, is the main bivalve species cultivated in the world. With global warming enabling its reproduction and larval survival at higher latitudes, this species is now recognized as invasive and creates wild oyster reefs globally. In this study, the spatial distribution of photosynthetic assemblages colonizing the shells of wild C. gigas was investigated on both a large scale (two contrasting types of reefs found in mudflats and rocky areas and a small scale (within individual shells using a hyperspectral imager. The microspatial distribution of all phototrophs was obtained by mapping the Normalized Difference Vegetation Index (NDVI. Second derivative (δδ analyses of hyperspectral images at 462, 524, 571 and 647 nm were subsequently applied to map diatoms, cyanobacteria, rhodophytes and chlorophytes, respectively. A concomitant pigment analysis was carried out by high performance liquid chromatography and completed by taxonomic observations. This study showed that there was high microalgal diversity associated with wild oyster shells and that there were differences in the structure of the phototropic assemblages depending on the type of reef. Namely, vertically-growing oysters in mudflat areas had a higher biomass of epizoic diatoms (hyperspectral proxy at δδ462 nm and were mainly colonized by species of the genera Navicula, Nitzschia and Hippodonta, which are epipelic or motile epipsammic. The assemblages on the horizontal oysters contained more tychoplanktonic diatoms (e.g. Thalassiosira pseudonana, T. proschkinae and Plagiogrammopsis vanheurckii. Three species of boring cyanobacteria were observed for both types of reef: Mastigocoleus testarum, Leptolyngbya terrebrans, and Hyella caespistosa, but the second derivative analysis at 524 nm showed a significantly higher biomass for the horizontally-growing oysters. There was no biomass difference for the boring chlorophyte assemblages (δδ647 nm, with two species: Eugomontia testarum and Ostreobium quekettii observed for both types of reef. This study shows that oyster shells are an idiosyncratic but ubiquitous habitat for phototrophic assemblages. The contribution of these assemblages in terms of biomass and production to the functioning of coastal areas, and particularly to shellfish ecosystems, remains to be evaluated.

  3. Systematics, morphology, and paleobiogeography of Lower Devonian tabulate coral epibionts: Hyostragulidae fam. nov. on hyolithids

    Czech Academy of Sciences Publication Activity Database

    Galle, Arnošt; Plusquellec, Y.

    2002-01-01

    Roč. 7, - (2002), s. 53-64+2 pl. ISSN 0945-7275 R&D Projects: GA AV ČR IAA3013807; GA ČR GA205/98/1347 Institutional research plan: CEZ:AV0Z3013912 Keywords : Hyostragulidae fam. nov. Subject RIV: DB - Geology ; Mineralogy

  4. New records of epibiont Ciliates (Ciliophora) from Indian coast with descriptions of six new species

    Digital Repository Service at National Institute of Oceanography (India)

    Chatterjee, T.; Fernandez-Leborans, G.; Ramteke, D.; Ingole, B.S.

    patzcuarensis Villalobos, 1943, lake Pátzcuaro (Michoacán, Mexico) (Mayen-Estrada & Aladro-Lubel, 1998). On Liocarcinus depurator (Linnaeus, 1758), L. vernalis (Risso, 1827), Goneplax rhomboids( Linnaeus, 1758), Dardanus arrosor (Herbst, 1796), Paguristes... oculatus (Fabricius, 1775), Pagurus excavates (Herbst, 1791), and Pagurus prideaux Leach, 1815 from N.W. Mediterranean Sea (Fernandez-Leborans, 2003). Acknowledgement Thanks are due to Dr Marleen De Troch, Marine Biology Section, University of Ghent...

  5. An overview of Suctorian ciliates (Ciliophora, Suctorea) as epibionts of halacarid mites (Acari, Halacaridae)

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.

    Subclass Exogenia Collin Order Metacinetida Jankowski Family Paracinetidae Jankowski Limnoricus ceter Jankowski, 1981 (Fig. 1–3) Diagnosis: Marine commensal, loricate, suctorian ciliate with stalk delimited from posterior margin of lorica. Both lorica...–11) =Thecacineta halacari Schulz, 1933 DOVGAL ET AL.62 · Zootaxa 1810 © 2008 Magnolia Press =Lissacineta allgeni Jankowski, 1981, syn. n. =Thecacineta allgeni (Jankowski, 1981), syn. n. Diagnosis: Marine suctorians with stylotheca. Cell body, slightly...

  6. A new early brachyuran (Crustacea, Decapoda) from the Middle Jurassic of northwest France, epibionts and ecological considerations

    NARCIS (Netherlands)

    Robin, N.; Bakel, van B.W.M.; Hondt, d' J.-L.; Charbonnier, S.

    2015-01-01

    The earliest known crabs are of Early and Middle Jurassic age; in general, they are rare. Here we describe a new species of homolodromioid from the late Bathonian of Sarthe (France), based on a single dorsal carapace, Tanidromites raboeufi n. sp. This specimen has mostly well-preserved cuticle, and

  7. Report of epibiont Thecacineta calix (Ciliophora: Suctorea) on deep sea Desmodora (Nematoda) from the Andaman Sea, Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Ingole, B.S.; Singh, R.; Sautya, S.; Dovgal, I.; Chatterjee, T.

    samples taken from the upper slope of the Northern Seamount located off Nicobar Island, 9859 0 31.52 00 N93857 0 15.48 00 E, from a water depth of 1301 m. Upon collection, the sponges were carefully separated from the sediment and immediately preserved... with absolute alcohol. In the laboratory, the sponge samples were washed carefully and the entire faunal community associated with sponge spicules were sorted out carefully and identified to the lowest possible taxa. All the nematodes were separated and fixed...

  8. Who Produces Ianthelline? The Arctic Sponge Stryphnus fortis or its Sponge Epibiont Hexadella dedritifera: a Probable Case of Sponge-Sponge Contamination.

    Science.gov (United States)

    Cárdenas, Paco

    2016-04-01

    The bromotyrosine derivative ianthelline was isolated recently from the Atlantic boreo-arctic deep-sea sponge Stryphnus fortis, and shown to have clear antitumor and antifouling effects. However, chemosystematics, field observations, and targeted metabolic analyses (using UPLC-MS) suggest that ianthelline is not produced by S. fortis but by Hexadella dedritifera, a sponge that commonly grows on S. fortis. This case highlights the importance of combining taxonomic and ecological knowledge to the field of sponge natural products research.

  9. First report of Limnoricus ponticus Dovgal and Lozowskiy (Ciliophora: Suctorea) as epibionts on Pycnophyes (Kinorhyncha) from the Indian Ocean with key to species of the genus Limnoricus

    Digital Repository Service at National Institute of Oceanography (India)

    Dovgal, I.; Chatterjee, T.; Ingole, B.S.; Nanajkar, M.

    of individuals from type copepoda host: body length (individuals from Kinorhyncha) 14-24 µm (47-49 µm under colonization of the type copepod host); width in the middle of body 12-17 µm (22-30 µm); macronucleus diameter 6-8 µm (13-16 µm); length of the lorica 44...

  10. Some ciliates from the marine wood boring isopod Sphaeroma treubia

    Digital Repository Service at National Institute of Oceanography (India)

    Santhakumari, V.; Nair, N.B.

    Seven ectocommensalic ciliates, namely, Vorticella companula, Zoothamnium rigidum, Cothurnia gammari, Legenophrys cochinensis sp. nov., Epistylis gammari, Folliculina producta and Foliculina boltoni, all first-time recorded from the wood...

  11. Deep Sequencing of Myxilla (Ectyomyxilla) methanophila, an Epibiotic Sponge on Cold-Seep Tubeworms, Reveals Methylotrophic, Thiotrophic, and Putative Hydrocarbon-Degrading Microbial Associations

    KAUST Repository

    Arellano, Shawn M.; Lee, Onon; Lafi, Feras Fawzi; Yang, Jiangke; Wang, Yong; Young, Craig; Qian, Peiyuan

    2012-01-01

    The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge

  12. Temporal variation of epi- and endofaunal assemblages associated with the red sponge Tedania ignis on a rocky shore (São Sebastião Channel, SE Brazil

    Directory of Open Access Journals (Sweden)

    Fosca P. P. Leite

    2016-01-01

    Full Text Available ABSTRACT Sponges are biogenic substrates that increase the available space on rocky shores and provide shelter for many groups of the benthic fauna, which can live both inside and on these sessile invertebrates. In order to assess the differences in temporal variation of endobiont and epibiont groups, samples of the red sponge Tedania ignis (Duchassaing & Michelotti, 1864 were obtained each month for one year. The density, richness and diversity of endobiont and epibiont groups were analyzed in relation to abiotic factors. The dry mass of the sponge was negatively correlated with the density of individuals in both groups and positively with the diversity of endobionts, while organic matter was positively correlated with the diversity of epibionts. Endobiont diversity was more highly correlated with intrinsic factors of the sponge, whereas the diversity of epibionts was more highly correlated with factors related to the surrounding environment.

  13. Epibiotic ciliates Scyphidia sp. and diatoms on Tigriopus fulvus (Copepoda: Harpacticoida exoskeleton

    Directory of Open Access Journals (Sweden)

    Luigi Pane

    2014-12-01

    Full Text Available Several microorganisms – epibionts – can adhere to living supports taking advantage for their survival, feeding and movement. Epibiosis occurs particularly in aquatic environments, on both benthic and planktonic organisms, among which copepods and cladocerans represent an important living support. The harpacticoid copepod Tigriopus fulvus, living in the splashpools of rocky coasts, was studied to recognize the occurrence of epibionts on the exoskeleton surface using scanning electon microscopy techniques. The first evidence of ciliate Scyphidia sp. on Tigriopus fulvus has been described and the occurrence of algae Cocconeis sp. has been observed as well. Epibionts were found to adhere to antennae, a site linked to the exploitation of water currents carrying food particles to mouthparts and to swimming legs. The reason of the occurrence on swimming legs is less clear and needs further observations. Pertinent results are described and discussed and the influence of epibionts on life cycle and behavior of Tigriopus fulvus is considered.

  14. Estágios imaturos de Actinote surima (Schaus (Lepidoptera, Nymphalidae, Acraeinae Immature stages of Actinote surima (Schaus (Lepidoptera, Nymphalidae, Acraeinae

    Directory of Open Access Journals (Sweden)

    Márlon Paluch

    1999-01-01

    Full Text Available Data on the life cycle and morphology of immature stages of Actinote surima (Schaus, 1902 are presented. The larva feed on leaves of Eupatorium intermedium DC and Eupatorium casarettoi (Rob. Steyermark (Asteraceae.

  15. Prevalence of Colacium vesiculosum (Colaciales: Euglenophyceae on planktonic crustaceans in a subtropical shallow lake of Argentina

    Directory of Open Access Journals (Sweden)

    Yolanda Zalocar

    2011-09-01

    Full Text Available Colacium vesiculosum (Euglenophyceae is an epibiont common on planktonic microcrustaceans of continental waters. The interaction between epibionts and substrate organisms is not very well known, particularly in subtropical environments of South America. In the present work, we analyzed the prevalence, density, biomass and attachment sites of C. vesiculosum on planktonic microcrustaceans from Paiva Lake, a subtropical lake of Argentina. With the aim to evaluate whether epibionts affect the filtering rates of Notodiaptomus spiniger, the dominant planktonic crustacean, we carried out bioassays using phytoplankton Colacium vesiculosum Ehrenberg (Euglenophyceae es un epibionte común en microcrustáceos del plancton de aguas continentales. La interacción epibiontes y organismo substrato es poco conocida, particularmente en ambientes subtropicales de América del Sur. Se analiza la prevalencia, densidad, biomasa y sitios de adhesión de C. vesiculosum en microcrustáceos planctónicos de un lago subtropical de Argentina. Con el fin de evaluar si los epibiontes afectan la tasa de filtración de Notodiaptomus spiniger Brian, crustáceo dominante del zooplancton, se realizaron bioensayos utilizando el fitoplancton <53µm. Los crustáceos fueron muestreados con un tubo de PVC (1m de largo, 10cm de diámetro filtrándose 50L de agua a través de una red de 53µm de abertura de malla. El recuento de los microcrustáceos se realizó en cámaras de Bogorov bajo microscopio estereoscópico. Los organismos infectados fueron separados y observados al microscopio fotónico para determinaciones de densidad y biovolumen de los epibiontes, y su distribución en el exoesqueleto. La prevalencia de C. vesiculosum fue mayor en crustáceos adultos que en estadíos larvales y juveniles. El grupo más infestado fue el de los copépodos calanoideos en relación con su alta densidad. Los sitios de adhesión sobre el exoesqueleto fueron las regiones del cuerpo que durante la

  16. Prevalence of Colacium vesiculosum (Colaciales: Euglenophyceae on planktonic crustaceans in a subtropical shallow lake of Argentina

    Directory of Open Access Journals (Sweden)

    Yolanda Zalocar

    2011-09-01

    Full Text Available Colacium vesiculosum (Euglenophyceae is an epibiont common on planktonic microcrustaceans of continental waters. The interaction between epibionts and substrate organisms is not very well known, particularly in subtropical environments of South America. In the present work, we analyzed the prevalence, density, biomass and attachment sites of C. vesiculosum on planktonic microcrustaceans from Paiva Lake, a subtropical lake of Argentina. With the aim to evaluate whether epibionts affect the filtering rates of Notodiaptomus spiniger, the dominant planktonic crustacean, we carried out bioassays using phytoplankton <53µm. Crustaceans were sampled using a PVC tube (1.2m long and 10cm in diameter, filtering 50L of water through a 53µm-mesh. Microcrustaceans were counted in Bogorov chambers under a stereoscopic microscope. The infested organisms were separated and observed with a photonic microscope to determine density and biovolume of epibionts, by analyzing their distribution on the exoskeleton. The prevalence of C. vesiculosum was higher in adult crustaceans than in their larvae and juveniles. The most infested group was that of calanoid copepods, related to their high density. The attachment sites on the exoskeleton were found to be the portions of the body which have a higher probability of encounter with epibionts during locomotion and feeding, i.e., antennae and thoracic legs in copepods, and thoracic legs and postabdomen in cladocerans. The similar values found in the filtering rate of infested and uninfested individuals of N. spiniger and the constant prevalence (<40% of epibiont algae, suggest that C. vesiculosum does not condition the life of planktonic crustaceans of Paiva Lake. Rev. Biol. Trop. 59 (3: 1295-1306. Epub 2011 September 01.

  17. Comparative myoanatomy of cycliophoran life cycle stages

    DEFF Research Database (Denmark)

    Neves, Ricardo C.; Cunha, Maria R.; Funch, Peter

    2010-01-01

    The metazoan phylum Cycliophora includes small cryptic epibionts that live attached to the mouthparts of clawed lobsters. The life cycle is complex, with alternating sexual and asexual generations, and involves several sessile and free-living stages. So far, the morphological and genetic characte......The metazoan phylum Cycliophora includes small cryptic epibionts that live attached to the mouthparts of clawed lobsters. The life cycle is complex, with alternating sexual and asexual generations, and involves several sessile and free-living stages. So far, the morphological and genetic...

  18. Characterization of the putatively introduced red alga Acrochaetium secundatum (Acrochaetiales, Rhodophyta) growing epizoically on the pelage of southern sea otters (Enhydra lutris nereis)

    Science.gov (United States)

    Bentall, Gena B.; Rosen, Barry H.; Kunz, Jessica M.; Miller, Melissa A.; Saunders, Gary W.; LaRoche, Nicole L.

    2016-01-01

    Ecological associations between epibionts (organisms that live on the surface of another living organism) and vertebrates have been documented in both marine and terrestrial environments, and may be opportunistic, commensal, or symbiotic (Lewin et al. 1981, Holmes 1985, Allen et al. 1993, Bledsoe et al. 2006, Pfaller et al. 2008, Suutari et al. 2010). Although epibiont proliferation is frequently reported on slow-moving, sparsely haired organisms such as manatees and sloths, reports from densely furred, highly mobile mammals are much less common. There are reports of epizoic algae for several species of pinnipeds (Kenyon and Rice 1959, Scheffer 1962, Baldridge 1977, Allen et al. 1993), which rely to varying degrees on both pelage and blubber for thermoregulation, but the phenomenon has not been widely described. Scheffer (1962) noted that red algae was fairly common on the pelage of northern fur seals (Callorhinus ursinus), pinnipeds for which fur likely makes a comparatively high contribution to thermoregulation (Donohue et al. 2000). For species with pelage that plays a critical role of thermal insulation, it seems implausible that an epibiont would persist on healthy individuals that devote significant energy resources toward grooming and actively maintaining their coat. Biological characteristics of epibiont settlement and attachment, and physiological requirements of epizoic species play key roles in their successful colonization and potential host impacts. To investigate this relationship, we explore a novel discovery of an epizoic alga from southern sea otters, including describing algal development on sea otter hair and molecular identification of the algae.

  19. Distribution and Size of Barnacle Chelonibia patula Fouling Blue Crab Callinectes amnicola in Southeast Nigeria

    Directory of Open Access Journals (Sweden)

    Udoh James Philip

    2016-09-01

    Full Text Available The distribution and occurrence of epibionts on the dorsal carapace, ventral carapace and chela of 325 specimens of Callinectes amnicola (De Rocheburne, 1883 (103.4 - 138.7 mm carapace width from the Qua Iboe (QIRE and Imo River (IRE estuaries in southeast Nigeria was determined. The only ectosymbiont observed was cirriped barnacle, Chelonibia patula, mostly of smaller sizes (2.25 mm, infesting only 25-29% of intermoult crabs, more on females and in the Imo River estuary, with an average of four barnacles per crab, presupposing low level of epibiont-host interaction. There was no significant difference (P>0.05 in spatial distribution but epibionts were highest in the dry season in low salinity IRE (0.53‰ and in wet season in the medium-salinity QIRE (17.4‰. No public health risk has been reported among crab consumers in the study area. This study highlights epibiont-host interaction in the study area largely unknown for proper management of the fishery.

  20. Diversity and spatial heterogeneity of mangrove associated sponges of Curaçao and Aruba

    NARCIS (Netherlands)

    Hunting, E.R.; van Soest, R.W.M.; van der Geest, H.G.; Vos, A.; Debrot, A.O.

    2008-01-01

    Sponges are major epibionts of mangrove roots in the Caribbean. Mangrove sponge communities in the Caribbean mainly consist of species that are typical to this habitat and community compositions often differ from those found on coral reefs nearby. Heterogeneity in species distributions between

  1. Mycotoxin producing potential of some isolates of Aspergillus flavus and Eurotium groups from meat products.

    Science.gov (United States)

    el-Kady, I; el-Maraghy, S; Zohri, A N

    1994-09-01

    All strains (92) of A. flavus group proved to be positive for production of aflatoxin (45 to 1200 micrograms/50 ml medium) on potato dextrose liquid medium, while 59 strains only proved to be positive (35-310 micrograms/50 ml) on 15% NaCl potato-dextrose liquid medium. Most of the strains tested of A. flavus, A. flavus var. columnaris and A. oryzae produced aflatoxins B1, B2, G1 & G2. All positive strains of A. tamarii produced aflatoxins G1 & G2 while the tested isolate of A. zonatus produced aflatoxins B1 & G1. Of 95 strains tested of Eurotium, aflatoxins B1 & G1 were produced by one strain of each of E. chevalieri var. intermedium, E. repens and E. rubrum. Gliotoxin was detected in the extract of two strains of E. chevalieri and one strain of each of E. chevalieri var. intermedium and E. pseudoglaucum on the salt-free medium, and two strains of each of E. chevalieri, E. chevalieri var. intermedium and one of E. pseudoglaucum on 15% NaCl medium. Sterigmatocystin was produced by some strains of E. chevalieri, E. chevalieri var. intermedium, E. amstelodami, E. pseudoglaucum and E. rubrum on the two experimental media. One strain only of E. repens produced ochratoxin A while citrinin was detected in the extract of one strain of E. pseudoglaucum.

  2. Three species of entomopathogenic Nematodes of the family Steinernematidae (Nematoda: Rhabditida) new to continental Portugal

    Czech Academy of Sciences Publication Activity Database

    Valadas, V.; Mráček, Zdeněk; Oliveira, S.; Mota, M.

    2011-01-01

    Roč. 39, č. 2 (2011), s. 169-178 ISSN 0391-9749 Grant - others:Fundacao para a Ciencia e a Tecnologia (PT) SFHR/BD/22086/2005 Institutional research plan: CEZ:AV0Z50070508 Keywords : Steinernema intermedium * S. kraussei * Steinernema sp.

  3. Steinernema poinari sp. n. (Nematoda: Steinernematidae) a new entomopathogenic nematode from the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Mráček, Zdeněk; Půža, Vladimír; Nermuť, Jiří

    2014-01-01

    Roč. 3760, č. 3 (2014), s. 336-350 ISSN 1175-5326 R&D Projects: GA MŠk LH12105 Institutional support: RVO:60077344 Keywords : new species * affine/intermedium group * ITS Subject RIV: EG - Zoology Impact factor: 0.906, year: 2014

  4. Uncovering the genetic architecture of seed weight and size in intermediate wheatgrass through linkage and association mapping

    Science.gov (United States)

    Intermediate wheatgrass (IWG); Thinopyrum intermedium) is being developed as a new perennial grain crop that has a large allohexaploid genome similar to that of wheat (Triticum aestivum). Breeding for increased seed weight is one of the primary goals for improving grain yield of IWG. As a new crop, ...

  5. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance.

    Science.gov (United States)

    Ali, N; Heslop-Harrison, Js Pat; Ahmad, H; Graybosch, R A; Hein, G L; Schwarzacher, T

    2016-08-01

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm.

  6. Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre

    Directory of Open Access Journals (Sweden)

    Mary R. Gradoville

    2017-07-01

    Full Text Available Filamentous diazotrophic Cyanobacteria of the genus Trichodesmium, often found in colonial form, provide an important source of new nitrogen to tropical and subtropical marine ecosystems. Colonies are composed of several clades of Trichodesmium in association with a diverse community of bacterial and eukaryotic epibionts. We used high-throughput 16S rRNA and nifH gene sequencing, carbon (C and dinitrogen (N2 fixation assays, and metagenomics to describe the diversity and functional potential of the microbiome associated with Trichodesmium colonies collected from the North Pacific Subtropical Gyre (NPSG. The 16S rRNA and nifH gene sequences from hand-picked colonies were predominantly (>99% from Trichodesmium Clade I (i.e., T. thiebautii, which is phylogenetically and ecologically distinct from the Clade III IMS101 isolate used in most laboratory studies. The bacterial epibiont communities were dominated by Bacteroidetes, Alphaproteobacteria, and Gammaproteobacteria, including several taxa with a known preference for surface attachment, and were relatively depleted in the unicellular Cyanobacteria and small photoheterotrophic bacteria that dominate NPSG surface waters. Sequencing the nifH gene (encoding a subcomponent of the nitrogenase enzyme identified non-Trichodesmium diazotrophs that clustered predominantly among the Cluster III nifH sequence-types that includes putative anaerobic diazotrophs. Trichodesmium colonies may represent an important habitat for these Cluster III diazotrophs, which were relatively rare in the surrounding seawater. Sequence analyses of nifH gene transcripts revealed several cyanobacterial groups, including heterocystous Richelia, associated with the colonies. Both the 16S rRNA and nifH datasets indicated strong differences between Trichodesmium epibionts and picoplankton in the surrounding seawater, and also between the epibionts inhabiting Trichodesmium puff and tuft colony morphologies. Metagenomic and 16S r

  7. Sessile macro-epibiotic community of solitary ascidians, ecosystem engineers in soft substrates of Potter Cove, Antarctica

    OpenAIRE

    Rimondino, Clara; Torre, Luciana; Sahade, Ricardo Jose; Tatian, Marcos

    2016-01-01

    The muddy bottoms of inner Potter Cove, King George Island (Isla 25 de Mayo), South Shetlands, Antarctica, show a high density and richness of macrobenthic species, particularly ascidians. In other areas, ascidians have been reported to play the role of ecosystem engineers, as they support a significant number of epibionts, increasing benthic diversity. In this study, a total of 21 sessile macro-epibiotic taxa present on the ascidian species Corella antarctica Sluiter, 1905, Cnemidocarpa verr...

  8. The impact of suspended oyster farming on nitrogen cycling and nitrous oxide production in a sub-tropical Australian estuary

    Science.gov (United States)

    Erler, Dirk V.; Welsh, David T.; Bennet, William W.; Meziane, Tarik; Hubas, Cédric; Nizzoli, Daniele; Ferguson, Angus J. P.

    2017-06-01

    In this study we quantified nitrate (NO3-) reduction (denitrification, anammox and DNRA) and N2O production in sediments and epibiont communities associated with Sydney Rock Oyster (Saccostrea glomerata) farming. In sediments beneath an active suspended oyster farm, DNRA accounted for 98% of NO3- reduction with rates of up to 169 ± 45 μmol N m-2 h-1. Much of this DNRA was fuelled by NO3- derived from nitrification. Reference sediments had significantly lower DNRA rates of 83.8 ± 28.2 μmol N m-2 h-1, however this constituted 96% of the sites total NO3- reduction. Fatty acid analysis showed that sediment organic matter was more labile in the oyster impacted sediments, facilitating subtle shifts in sediment oxygen demand which increased the Fe2+ availability with respect to the reference sediments. The difference in DNRA rate between the sites was attributed to autotrophic oxidation of soluble Fe2+ in sediments underlying the oyster cultures. DNRA was absent in the oyster shell epibiont communities and rates of anammox and denitrification were lower than in the sediments. Production of NH4+ from the oysters and their associated epibionts was larger than DNRA and reached a rate of 206.2 μmol N m-2 h-1. Nitrous oxide production rates were generally low compared to other aquaculture systems and the net flux of N2O for the combined oyster cultivation system (i.e. sediments plus epibionts) was negative, i.e. there was N2O consumption in the sediments beneath the oysters. Overall, subtropical suspended oyster farming systems favour inorganic N retention over N loss.

  9. Diversity and spatial heterogeneity of mangrove associated sponges of Curaçao and Aruba

    OpenAIRE

    Hunting, E.R.; van Soest, R.W.M.; van der Geest, H.G.; Vos, A.; Debrot, A.O.

    2008-01-01

    Sponges are major epibionts of mangrove roots in the Caribbean. Mangrove sponge communities in the Caribbean mainly consist of species that are typical to this habitat and community compositions often differ from those found on coral reefs nearby. Heterogeneity in species distributions between locations and within locations between roots is often reported. This study quantifi es the diversity and abundance of mangrove associated sponges in the inner bays of Curaçao and Aruba and correlates va...

  10. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

    OpenAIRE

    Robinson, Nathan J.; Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

    2016-01-01

    The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtl...

  11. Bird embryos uncover homology and evolution of the dinosaur ankle.

    Science.gov (United States)

    Ossa-Fuentes, Luis; Mpodozis, Jorge; Vargas, Alexander O

    2015-11-13

    The anklebone (astragalus) of dinosaurs presents a characteristic upward projection, the 'ascending process' (ASC). The ASC is present in modern birds, but develops a separate ossification centre, and projects from the calcaneum in most species. These differences have been argued to make it non-comparable to dinosaurs. We studied ASC development in six different orders of birds using traditional techniques and spin-disc microscopy for whole-mount immunofluorescence. Unexpectedly, we found the ASC derives from the embryonic intermedium, an ancient element of the tetrapod ankle. In some birds it comes in contact with the astragalus, and, in others, with the calcaneum. The fact that the intermedium fails to fuse early with the tibiale and develops an ossification centre is unlike any other amniotes, yet resembles basal, amphibian-grade tetrapods. The ASC originated in early dinosaurs along changes to upright posture and locomotion, revealing an intriguing combination of functional innovation and reversion in its evolution.

  12. Quantitative electron microscopical autoradiography of calcium during amelogenesis

    International Nuclear Information System (INIS)

    Nagai, Yoshinori; Frank, R.M.

    1975-01-01

    The migration of 45 Ca through the stratum intermedium and through the secreting ameloblasts towards enamel has been studied by electron microscopical autoradiography in the toothgerms of newborn cats. A quantitative procedure was applied to the study of the 45 Ca migration in amelogenesis and two pathways were demonstrated. The relatively more important direct route passed through the stratum intermedium and the ameloblast intercellular spaces and reached the enamel directly. The second pathway consisted of an intracellular migration through the ameloblast. 45 Ca penetrated the cell through its basal pole. The mitochondrias were the most highly labeled organelles at the different experimental time intervals studied. A total absence of silver grains was noted over the secretory ameloblastic bodies. At 6 hours, the highest labeling was observed over enamel. (auth.)

  13. Dancing for food in the deep sea: bacterial farming by a new species of Yeti crab.

    Directory of Open Access Journals (Sweden)

    Andrew R Thurber

    Full Text Available Vent and seep animals harness chemosynthetic energy to thrive far from the sun's energy. While symbiont-derived energy fuels many taxa, vent crustaceans have remained an enigma; these shrimps, crabs, and barnacles possess a phylogenetically distinct group of chemosynthetic bacterial epibionts, yet the role of these bacteria has remained unclear. We test whether a new species of Yeti crab, which we describe as Kiwa puravida n. sp, farms the epibiotic bacteria that it grows on its chelipeds (claws, chelipeds that the crab waves in fluid escaping from a deep-sea methane seep. Lipid and isotope analyses provide evidence that epibiotic bacteria are the crab's main food source and K. puravida n. sp. has highly-modified setae (hairs on its 3(rd maxilliped (a mouth appendage which it uses to harvest these bacteria. The ε- and γ- proteobacteria that this methane-seep species farms are closely related to hydrothermal-vent decapod epibionts. We hypothesize that this species waves its arm in reducing fluid to increase the productivity of its epibionts by removing boundary layers which may otherwise limit carbon fixation. The discovery of this new species, only the second within a family described in 2005, stresses how much remains undiscovered on our continental margins.

  14. Dancing for food in the deep sea: bacterial farming by a new species of Yeti crab.

    Science.gov (United States)

    Thurber, Andrew R; Jones, William J; Schnabel, Kareen

    2011-01-01

    Vent and seep animals harness chemosynthetic energy to thrive far from the sun's energy. While symbiont-derived energy fuels many taxa, vent crustaceans have remained an enigma; these shrimps, crabs, and barnacles possess a phylogenetically distinct group of chemosynthetic bacterial epibionts, yet the role of these bacteria has remained unclear. We test whether a new species of Yeti crab, which we describe as Kiwa puravida n. sp, farms the epibiotic bacteria that it grows on its chelipeds (claws), chelipeds that the crab waves in fluid escaping from a deep-sea methane seep. Lipid and isotope analyses provide evidence that epibiotic bacteria are the crab's main food source and K. puravida n. sp. has highly-modified setae (hairs) on its 3(rd) maxilliped (a mouth appendage) which it uses to harvest these bacteria. The ε- and γ- proteobacteria that this methane-seep species farms are closely related to hydrothermal-vent decapod epibionts. We hypothesize that this species waves its arm in reducing fluid to increase the productivity of its epibionts by removing boundary layers which may otherwise limit carbon fixation. The discovery of this new species, only the second within a family described in 2005, stresses how much remains undiscovered on our continental margins.

  15. Sessile macro-epibiotic community of solitary ascidians, ecosystem engineers in soft substrates of Potter Cove, Antarctica

    Directory of Open Access Journals (Sweden)

    Clara Rimondino

    2015-01-01

    Full Text Available The muddy bottoms of inner Potter Cove, King George Island (Isla 25 de Mayo, South Shetlands, Antarctica, show a high density and richness of macrobenthic species, particularly ascidians. In other areas, ascidians have been reported to play the role of ecosystem engineers, as they support a significant number of epibionts, increasing benthic diversity. In this study, a total of 21 sessile macro-epibiotic taxa present on the ascidian species Corella antarctica Sluiter, 1905, Cnemidocarpa verrucosa (Lesson, 1830 and Molgula pedunculata Herdman, 1881 were identified, with Bryozoa being the most diverse. There were differences between the three ascidian species in terms of richness, percent cover and diversity of sessile macro-epibionts. The morphological characteristics of the tunic surface, the available area for colonization (and its relation with the age of the basibiont individuals and the pH of the ascidian tunic seem to explain the observed differences. Recent environmental changes in the study area (increase of suspended particulate matter caused by glaciers retreat have been related to observed shifts in the benthic community structure, negatively affecting the abundance and distribution of the studied ascidian species. Considering the diversity of sessile macro-epibionts found on these species, the impact of environmental shifts may be greater than that estimated so far.

  16. Highlighting of quorum sensing lux genes and their expression in the hydrothermal vent shrimp Rimicaris exoculata ectosymbiontic community. Possible use as biogeographic markers.

    Directory of Open Access Journals (Sweden)

    Simon Le Bloa

    Full Text Available Rimicaris exoculata is a caridean shrimp that dominates the fauna at several hydrothermal vent sites of the Mid-Atlantic Ridge. It has two distinct and stable microbial communities. One of these epibiontic bacterial communities is located in the shrimp gut and has a distribution and role that are poorly understood. The second colonizes its enlarged gill chamber and is involved in host nutrition. It is eliminated after each molt, and has colonization processes reminiscent of those of a biofilm. The presence and expression of genes usually involved in quorum sensing (QS were then studied. At four sites, Rainbow, TAG, Snake Pit and Logatchev, two lux genes were identified in the R. exoculata epibiontic community at different shrimp molt stages and life stages. RT-PCR experiments highlighted lux gene expression activity at TAG, Snake Pit and Rainbow vent sites. Their potential QS activity and their possible roles in epibiont colonization processes are discussed. Moreover, phylogenetic analysis has shown the presence of three clades for luxS (Epsilonproteobacteria and four clades for luxR (Gammaproteobacteria genes, each clade being restricted to a single site. These genes are more divergent than the 16S rRNA one. They could therefore be used as biogeographical genetic markers.

  17. Epibiotic pressure contributes to biofouling invader success.

    Science.gov (United States)

    Leonard, Kaeden; Hewitt, Chad L; Campbell, Marnie L; Primo, Carmen; Miller, Steven D

    2017-07-12

    Reduced competition is a frequent explanation for the success of many introduced species. In benthic marine biofouling communities, space limitation leads to high rates of overgrowth competition. Some species can utilise other living organisms as substrate (epibiosis), proffering a competitive advantage for the epibiont. Additionally, some species can prevent or reduce epibiotic settlement on their surfaces and avoid being basibionts. To test whether epibiotic pressure differs between native and introduced species, we undertook ex situ experiments comparing bryozoan larval settlement to determine if introduced species demonstrate a greater propensity to settle as epibionts, and a reduced propensity to be basibionts, than native species. Here we report that introduced species opportunistically settle on any space (bare, native, or introduced), whereas native species exhibit a strong tendency to settle on and near other natives, but avoid settling on or near introduced basibionts. In addition, larvae of native species experience greater larval wastage (mortality) than introduced species, both in the presence and absence of living substrates. Introduced species' ability to settle on natives as epibionts, and in turn avoid epibiosis as basibionts, combined with significantly enhanced native larval wastage, provides a comprehensive suite of competitive advantages contributing to the invasion success of these biofouling species.

  18. Eelgrass Leaf Surface Microbiomes Are Locally Variable and Highly Correlated with Epibiotic Eukaryotes

    Directory of Open Access Journals (Sweden)

    Mia M. Bengtsson

    2017-07-01

    Full Text Available Eelgrass (Zostera marina is a marine foundation species essential for coastal ecosystem services around the northern hemisphere. Like all macroscopic organisms, it possesses a microbiome (here defined as an associated prokaryotic community which may play critical roles in modulating the interaction of eelgrass with its environment. For example, its leaf surface microbiome could inhibit or attract eukaryotic epibionts which may overgrow the eelgrass leading to reduced primary productivity and subsequent eelgrass meadow decline. We used amplicon sequencing of the 16S and 18S rRNA genes of prokaryotes and eukaryotes to assess the leaf surface microbiome (prokaryotes as well as eukaryotic epibionts in- and outside lagoons on the German Baltic Sea coast. Prokaryote microbiomes varied substantially both between sites inside lagoons and between open coastal and lagoon sites. Water depth, leaf area and biofilm chlorophyll a concentration explained a large amount of variation in both prokaryotic and eukaryotic community composition. The prokaryotic microbiome and eukaryotic epibiont communities were highly correlated, and network analysis revealed disproportionate co-occurrence between a limited number of eukaryotic taxa and several bacterial taxa. This suggests that eelgrass leaf surfaces are home to a mosaic of microbiomes of several epibiotic eukaryotes, in addition to the microbiome of the eelgrass itself. Our findings thereby underline that eukaryotic diversity should be taken into account in order to explain prokaryotic microbiome assembly and dynamics in aquatic environments.

  19. Quality assurance system for sitting high risk facilities

    International Nuclear Information System (INIS)

    Rodriguez, Aymee; Peralta, Jose L.; Fernandez, Manuel

    1999-01-01

    The paper shows how we have conceived and designed the quality assurance system for the site selection process of an area for sitting the facility of high risk in correspondence with the approved methodology. The results obtained in the implementation of the system have permitted the satisfactory performance of each one the expected stage, defining the most favorable sectors in order to continue the studies of the repository site for the disposal of low and intermedium. (author)

  20. Quality assurance system for sitting high risk facilities; Sistema de aseguramiento de la calidad para el emplazamiento de obras de alto riesgo

    Energy Technology Data Exchange (ETDEWEB)

    Rodriguez, Aymee; Peralta, Jose L.; Fernandez, Manuel [Centro de Tecnologia Nuclear, San Jose de las Lajas (Cuba)

    1999-11-01

    The paper shows how we have conceived and designed the quality assurance system for the site selection process of an area for sitting the facility of high risk in correspondence with the approved methodology. The results obtained in the implementation of the system have permitted the satisfactory performance of each one the expected stage, defining the most favorable sectors in order to continue the studies of the repository site for the disposal of low and intermedium. (author) 7 refs., 1 tab.

  1. Transcriptome analysis of genes related to resistance against powdery mildew in wheat-Thinopyrum alien addition disomic line germplasm SN6306.

    Science.gov (United States)

    Li, Quanquan; Niu, Zubiao; Bao, Yinguang; Tian, Qiuju; Wang, Honggang; Kong, Lingrang; Feng, Deshun

    2016-09-15

    Wheat powdery mildew, which is mainly caused by Blumeria graminis f. sp. tritici (Bgt), seriously damages wheat production. The wheat-Thinopyrum intermedium alien addition disomic line germplasm SN6306, being one of the important sources of genes for wheat resistance, is highly resistant to Bgt E09 and to many other powdery mildew physiological races. However, knowledge on the resistance mechanism of SN6306 remains limited. Our study employed high-throughput RNA sequencing based on next-generation sequencing technology (Illumina) to obtain an overview of the transcriptome characteristics of SN6306 and its parent wheat Yannong 15 (YN15) during Bgt infection. The sequencing generated 104,773 unigenes, 9909 of which showed varied expression levels. Among the 9909 unigenes, 1678 unigenes showed 0 reads in YN15. The expression levels in Bgt-inoculated SN6306 and YN15 of exactly 39 unigenes that showed 0 or considerably low reads in YN15 were validated to identify the genes involved in Bgt resistance. Among the 39 unigenes, 12 unigenes were upregulated in SN6306 by 3-45 times. These unigenes mainly encoded kinase, synthase, proteases, and signal transduction proteins, which may play an important role in the resistance against Bgt. To confirm whether the unigenes that showed 0 reads in YN15 are really unique to SN6306, 8 unigenes were cloned and sequenced. Results showed that the selected unigenes are more similar to SN6306 and Th. intermedium than to the wheat cultivar YN15. The sequencing results further confirmed that the unigenes showing 0 reads in YN15 are unique to SN6306 and are most likely derived from Th. intermedium (Host) Nevski. Thus, the genes from Th. intermedium most probably conferred the resistance of SN6306 to Bgt. Copyright © 2016 Elsevier B.V. All rights reserved.

  2. Biological features on epibiosis of Amphibalanus improvisus (Cirripedia on Macrobrachium acanthurus (Decapoda

    Directory of Open Access Journals (Sweden)

    Cristiane Maria Rocha Farrapeira

    2010-06-01

    Full Text Available This study aimed to describe the epibiosis of barnacles Amphibalanus improvisus on eight adult Macrobrachium acanthurus males from the Mundaú Lagoon, state of Alagoas, Brazil. The number of epibiont barnacles varied from 247 to 1,544 specimens per prawn; these were distributed predominantly on the cephalothorax and pereiopods, but also on the abdomen and other appendices. Although some were already reproducing, most barnacles had been recruited recently or were still sexually immature; this suggests recent host arrival in that estuarine environment. Despite the fact that other barnacles occur in this region, A. improvisus is the only species reported as an epibiont on Macrobrachium acanthurus; this was also the first record of epibiosis on this host. The occurrence of innumerable specimens in the pereiopods' articulations and the almost complete covering of the carapace of some prawns (which also increased their weight suggest that A. improvisus is adapted to fixate this kind of biogenic substrate and that the relationship between the two species biologically damages the basibiont.O objetivo deste trabalho foi relatar a epibiose de cirrípedes Amphibalanus improvisus em oito camarões machos adultos da espécie Macrobrachium acanthurus provenientes da Laguna Mundaú, Alagoas, Brasil. O número de cirrípedes epibiontes variou desde 247 até 1.544 espécimes por camarão, distribuídos predominantemente no cefalotórax e pereiópodos, mas presentes também no abdome e demais apêndices. A grande maioria dos cirrípedes era recém-recrutada ou ainda estava sexualmente imatura, embora de alguns estivessem já em reprodução, sugerindo a chegada recente de seu hospedeiro no ambiente estuarino. Apesar de ocorrem outros cirrípedes na região, A. improvisus foi à única espécie relatada como epibionte em Macrobrachium acanthurus e isto se constituiu o primeiro registro de epibiose de Amphibalanus improvisus A ocorrência de inúmeros esp

  3. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina.

    Directory of Open Access Journals (Sweden)

    Stacey DeAmicis

    Full Text Available Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide

  4. Distribution and Size of Barnacle Chelonibia patula Fouling Blue Crab Callinectes amnicola in Southeast Nigeria

    OpenAIRE

    Udoh James Philip; Otoh Aniekan Johnny

    2016-01-01

    The distribution and occurrence of epibionts on the dorsal carapace, ventral carapace and chela of 325 specimens of Callinectes amnicola (De Rocheburne, 1883) (103.4 - 138.7 mm carapace width) from the Qua Iboe (QIRE) and Imo River (IRE) estuaries in southeast Nigeria was determined. The only ectosymbiont observed was cirriped barnacle, Chelonibia patula, mostly of smaller sizes (2.25 mm), infesting only 25-29% of intermoult crabs, more on females and in the Imo River estuary, with an average...

  5. Diversity of thraustochytrid protists isolated from brown alga, Sargassum cinereum using 18S rDNA sequencing and their morphological response to heavy metals

    Digital Repository Service at National Institute of Oceanography (India)

    Damare, V.S.

    -specific in occurrence rather than free-living in the water column. This substrate-specific nature helps these protists to grow on Sargassum as epibionts (Raghukumar, 2002). Though the brown alga produces tannins on distal growing tips that have an inhibitory effect... on living surfaces. Hydrobiologia 461, 37–40. Badrinathan S., Shiju T.M., Sharon C.A.S., Arya R. and Pragasam V. (2012) Purification and structural characterization of sulfated polysaccharide from Sargassum myriocystum and its efficacy in scavenging free...

  6. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

    Science.gov (United States)

    Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

    2016-01-01

    The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals. PMID:27257972

  7. Biomass and relative coverage of benthic algae in the fore-reef of Curacao (Netherlands Antilles) in relation to production

    Energy Technology Data Exchange (ETDEWEB)

    de Ruyter van Stevenick, E.D.; Breeman, A.M.

    1981-11-15

    Biomass of benthic algae, expressed as chlorophyll a content (..mu..g cm/sup -2/) and as dry weight (mg cm/sup -2/) per substrate surface area in the coral reef of Curacao at 12 m and 25 m depth was measured from August 1978 to March 1979. To determine dry weights, substrates containing endolithic and epilithic algae were oxidized by means of wet combustion with hydrogen peroxide. Loss of weight caused by this process was regarded as algal dry weight. The crustose corallines Archaeolithothamnion dimotum Fosl. et Howe (25 m), Hydrolithon boergesenii (Fosl.) Fosl. (12 m and 25 m) and Lithophyllum cf. intermedium Fosl. (12 m), vegetations of endolithic algae dominated by Ostreobium quekettii Born. et Flah. (12 m and 25 m), and mixed turfs of epilithic filamentous algae and sometimes Lithophyllum cf. intermedium on substrates containing endolithic algae (12 m and 25 m) were examined. Chlorophyll a values ranged from 8.7 ..mu..g cm/sup -2/ for H. boergesenii at 12 m to 20.5 ..mu..g cm/sup -2/ for epilithic filamentous algae on substrates containing endolithic algae at 25 m. Dry weights varied from 12.7 mg cm/sup -2/ for L. cf. intermedium at 12 m to 25.7 mg cm/sup -2/ for epilithic filamentous algae on substrates containing endolithic algae at 25 m. Both at 12 m and 25 m, differences in chlorophyll a content and dry weights between substrates containing endolithic algae with and without epilithic filamentous algae were low. Biomass of endolithic algae is quantitatively more important than that of epilithic filamentous algae. It is concluded that, at 12 m, biomass of the algal vegetation as a whole is lowest while production is highest. This is attributed to maximum grazing pressure at this depth ('drop off' community), especially on epilithic filamentous algae.

  8. Efferent projections of the ectostriatum in the pigeon (Columba livia)

    Science.gov (United States)

    Husband, S. A.; Shimizu, T.

    1999-01-01

    The ectostriatum is a major visual component of the avian telencephalon. The core region of the ectostriatum (Ec) receives visual input from the optic tectum through thalamic nuclei. In the present study, the efferent projections of the ectostriatum were investigated by using the anterograde tracers Phaseolus vulgaris leucoagglutinin and biotinylated dextran amine. Projection patterns resulting from these tracers were confirmed by the retrograde tracer cholera toxin subunit B. When anterograde tracers were injected in Ec, primary projections were seen traveling dorsolaterally to the belt region of the ectostriatum (Ep) and the neostriatal area immediately surrounding Ep (Ep2). Neurons in Ep sent projections primarily to the overlying Ep2. The efferents of Ep2 traveled dorsolaterally to terminate in three telencephalic regions, from anterior to posterior: (1) neostriatum frontale, pars lateralis (NFL), (2) area temporo-parieto-occipitalis (TPO), and (3) neostriatum intermedium, pars lateralis (NIL). A part of the archistriatum intermedium and the lateral part of the neostriatum caudale also received somewhat minor projections. In addition, some neurons in Ec were also the source of direct, but minor, projections to the NFL, TPO, NIL, and archistriatum intermedium. The topographical relationship among the primary (Ec), secondary (Ep and Ep2), and tertiary (NFL, TPO, NIL) areas indicate that the neural populations for visual processing are organized along the rostral-caudal axis. Thus, the anterior Ec sent efferents to the anterior Ep, which in turn sent projections to anterior Ep2. Neurons in the anterior Ep2 sent projections to NFL and the anterior TPO. Similarly, the intermediate and posterior Ec sent projections to corresponding parts of Ep, whose efferents projected to intermediate and posterior Ep2, respectively. The intermediate Ep2 gave rise to major projections to TPO, whereas posterior Ep2 neurons sent efferents primarily to NIL. The organization of this

  9. Quantum entanglement analysis of an optically excited coupling of two nuclear spins via a mediator: Combining the quantum concurrence and negativity

    Science.gov (United States)

    Fu, Chenghua; Hu, Zhanning

    2018-03-01

    In this paper, we investigate the characteristics of the nuclear spin entanglement generated by an intermedium with an optically excited triplet. Significantly, the interaction between the two nuclear spins presents to be a direct XY coupling in each of the effective subspace Hamiltonians which are obtained by applying a transformation on the natural Hamiltonian. The quantum concurrence and negativity are discussed to quantitatively describe the quantum entanglement, and a comparison between them can reveal the nature of their relationship. An innovative general equation describing the relationship between the concurrence and negativity is explicitly obtained.

  10. Overexpression of TiERF1 enhances resistance to sharp eyespot in transgenic wheat

    OpenAIRE

    Chen, Liang; Zhang, ZengYan; Liang, HongXia; Liu, HongXia; Du, LiPu; Xu, Huijun; Xin, Zhiyong

    2008-01-01

    Wheat sharp eyespot, primarily caused by a soil-borne fungus Rhizoctonia cerealis, has become one of the most serious diseases of wheat in China. In this study, an ethylene response factor (ERF) gene from a wheat relative Thinopyrum intermedium, TiERF1, was characterized further, transgenic wheat lines expressing TiERF1 were developed, and the resistance of the transgenic wheat lines against R. cerealis was investigated. Southern blotting analysis indicated that at least two copies of the TiE...

  11. Natural re-establishment of vesicular-arbuscular mycorrhizae following stripmine reclamation in Wyoming

    Energy Technology Data Exchange (ETDEWEB)

    Allen, E.B.; Allen, M.F. (University of Wyoming, Laramie, WY (USA))

    1980-01-01

    The % root infection of {ital Agropyron smithii} and {ital A. intermedium} by vesicular-arbuscular mycorrhizae was measured and spoil spores were counted in six reclaimed stripmine sites in Wyoming. On 2- and 3-yr old sites % infection and spore counts were c. 50% or less than native prairie levels. Spore counts of a 3-yr old disked prairie site were not different from the undisturbed prairie level, but infection was significantly lower. Spore counts of the reclimed sites were not highly correlated with % root infection. Five of seven annuals which colonized the reclaimed and disked sites were non-mycorrhizal. 43 refs., 3 tabs.

  12. Immune response and parasitic infestation on Pacific white shrimp (Lithopenaeus vannamei) in immuno-probio circulation system (SI-PBR) in ponds

    Science.gov (United States)

    Mahasri, G.; Sari, P. D. W.; Prayogo

    2018-04-01

    The main causes of death of pacific white shrimp in aquaculture are diseases. One effort to control deseases by improving the defense ability of shrimp body against disesases and optimizing water quality during farming through the application of a new aquaculture technology called Immuno-Probiocirculation System (SI-PBR). This research aimed to analyze immune response on Total Haemocyte Count (THC) and Differential Haemocyte Count (DHC), parasitic infestation on pacific white shrimp in many ages, survival rate of pacific white shrimp during farming period for 90 days in SI-PBR. The results of this research showed that the lowest parasitic infestation (Zoothamnium penaei) is 12.46 % that happened on 90-days-old shrimp in SI-PBR pond, while the highest infestasion is on the shrimp not given SI-PBR, reaching 54.65 %. In addition, the immune response (THC and DHC) also increased. The highest survival rate discovered in 90 days shrimp farming is 80% using SI-PBR. This is higher than the pond without SI-PBR, which is 22 %. Therefore, SI-PBR in shrimp farming in tradisional ponds is able to increase immune response, survival rate, and is also able to decrease parasitic infestation during 90 days of farming.

  13. Sunken wood habitat for thiotrophic symbiosis in mangrove swamps.

    Science.gov (United States)

    Laurent, Mélina C Z; Gros, Olivier; Brulport, Jean-Pierre; Gaill, Françoise; Bris, Nadine Le

    2009-03-01

    Large organic falls to the benthic environment, such as dead wood or whale bones, harbour organisms relying on sulfide-oxidizing symbionts. Nothing is known however, concerning sulfide enrichment at the wood surface and its relation to wood colonization by sulfide-oxidizing symbiotic organisms. In this study we combined in situ hydrogen sulfide and pH measurements on sunken wood, with associated fauna microscopy analyses in a tropical mangrove swamp. This shallow environment is known to harbour thiotrophic symbioses and is also abundantly supplied with sunken wood. A significant sulfide enrichment at the wood surface was revealed. A 72h sequence of measurements emphasized the wide fluctuation of sulfide levels (0.1->100muM) over time with both a tidal influence and rapid fluctuations. Protozoans observed on the wood surface were similar to Zoothamnium niveum and to vorticellids. Our SEM observations revealed their association with ectosymbiotic bacteria, which are likely to be sulfide-oxidizers. These results support the idea that sunken wood surfaces constitute an environment suitable for sulfide-oxidizing symbioses.

  14. Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata.

    Science.gov (United States)

    Guri, Mathieu; Durand, Lucile; Cueff-Gauchard, Valérie; Zbinden, Magali; Crassous, Philippe; Shillito, Bruce; Cambon-Bonavita, Marie-Anne

    2012-03-01

    The caridean shrimp Rimicaris exoculata dominates the fauna at several Mid-Atlantic Ridge hydrothermal vent sites. This shrimp has an enlarged gill chamber, harboring a dense ectosymbiotic community of chemoautotrophic bacteria associated with mineral oxide deposits. Until now, their acquisition is not fully understood. At three hydrothermal vent sites, we analyzed the epibionts diversity at different moult stages and also in the first stages of the shrimp life (eggs, hatched eggs (with larvae) and juveniles). Hatched eggs associated with young larvae were collected for the first time directly from gravid females at the Logachev vent site during the Serpentine cruise. An approach using 16S rRNA clone libraries, scanning and transmission electron microscopy, and fluorescent in situ hybridization was used. Molecular results and microscope observations indicated a switch in the composition of the bacterial community between early R. exoculata life cycle stage (egg libraries dominated by the Gammaproteobacteria) and later stages (juvenile/adult libraries dominated by the Epsilonproteobacteria). We hypothesized that the epibiotic phylotype composition could vary according to the life stage of the shrimp. Our results confirmed the occurrence of a symbiosis with Gammaproteobacteria and Epsilonproteobacteria, but more complex than previously assumed. We revealed the presence of active type-I methanotrophic bacteria colonizing the cephalothorax of shrimps from the Rainbow site. They were also present on the eggs from the Logachev site. This could be the first 'epibiotic' association between methanotrophic bacteria and hydrothermal vent crustacean. We discuss possible transmission pathways for epibionts linked to the shrimp life cycle.

  15. Excretory calcinosis: a new fatal disease of wild American lobsters Homarus americanus.

    Science.gov (United States)

    Dove, Alistair D M; LoBue, Carl; Bowser, Paul; Powell, Mark

    2004-03-10

    A significant number of moribund and dead lobsters Homarus americanus were reported to New York state authorities by lobster fishers in Long Island Sound (LIS) during the summer of 2002. Morbid lobsters were characterised by an orange discolouration of the abdomen, lethargy, an excess of epibionts and poor post-capture survival. On necropsy, severe extensive multifocal or diffuse mineralised granulomatous inflammation of the gills and antennal glands was the most striking pathology. In the gills, granulomas often occluded the lumen of filaments, resulting in congestion, ischemia and coagulative necrosis of gill tissues. In the antennal glands, granulomas were concentrated along the border between the coelomosac and labyrinth. No significant pathogens were recovered from diseased individuals. In prechronic individuals, however, it was evident that granulomas were focused around calcium carbonate (aragonite) crystals. This disease may result from anomalously high sea-bottom temperatures in LIS (approximately 23 degrees C) during the summer of 2002 and associated disruptions of the calcium chemistry of lobsters in favour of deposition of minerals in soft tissues. The ultimate cause of death of affected lobsters is probably respiratory failure due to reduced effective surface area of the gills, exacerbated by hypermetabolic temperatures and an abundance of epibionts.

  16. Inducible defenses against herbivory and fouling in seaweeds

    Science.gov (United States)

    Pereira, Renato Crespo; Costa, Erica da Silva; Sudatti, Daniela Bueno; da Gama, Bernardo Antonio Perez

    2017-04-01

    Secondary metabolites play an important ecological role as a defense mechanism in seaweeds. Chemical defenses are well known to change in response to herbivory, but other driving factors, either biotic or abiotic, are often neglected. Epibiosis may not only reduce seaweed fitness, but also increase attractiveness to consumers, and thus defense production should also be triggered by epibionts. In this study, three Southwestern Atlantic seaweeds, Gracilaria cearensis, Pterocladiella capillacea (Rhodophyceae) and Codium decorticatum (Chlorophyceae) were investigated in laboratory bioassays designed to test whether the action of herbivory or simulated epibiosis influences chemical defenses. Crossed induction experiments were also performed in order to assess whether herbivore induction influences antifouling chemical defense, as well as whether epibiont induction would affect defense against herbivores. The effect of laboratory conditions on seaweeds in the absence of field stimuli was also investigated by comparing consumption of artificial food with extracts from acclimatized and non-acclimatized seaweeds (i.e., natural defense levels). Only the green seaweed C. decorticatum exhibited inducible antifouling defenses triggered by simulated epibiosis, but not by herbivores. In the other seaweeds there was no induction either by herbivory or simulated epibiosis. Acclimatization did not affect C. decorticatum defenses. However, non-acclimatized G. cearensis artificial foods were preferred over acclimatized ones, while extracts from acclimatized P. capillacea increased herbivore consumption, highlighting the need to acclimatize seaweeds before the main induction experiments. This is the first report of inducible defenses due to simulated fouling in seaweeds.

  17. Natural cleaning of the black-lip pearl oyster Pinctada margaritifera by butterflyfishes (Chaetodon) in French Polynesia

    Science.gov (United States)

    Bertucci, Frédéric; Legraverant, Yohann; Berthe, Cécile; Brooker, Rohan M.; Lo, Cédrik; Lecchini, David

    2016-12-01

    Biofouling increases the operational and economic costs associated with pearl production. As current procedures for reducing oyster biofouling can be detrimental to survival and growth and may pollute the surrounding environment developing alternative, biologically-mediated, methods could potentially increase both production and ecological sustainability. With this in mind, the present study investigated natural cleaning of black-lipped pearl oysters, Pinctada margaritifera, by butterflyfishes (Chaetodon). The feeding behaviour of six butterflyfish species was examined at Rangiroa Atoll, French Polynesia: Chaetodon auriga, Chaetodon citrinellus, Chaetodon ephippium, Chaetodon lunulatus, Chaetodon trifascialis and Chaetodon ulietensis. All species cleaned the surface of pearl oysters by removing epibionts (from 16% to 40% of total biomass), although dietary variation may explain different cleaning efficiencies. Generalist omnivores (C. auriga, C. citrinellus, C. ephippium and C. ulietensis) were the most efficient cleaners (% cleaning range: 26-40% of total biomass). Within this group, C. ephippium removed the most biomass (average of 41%) targeting algae and anemones. However, C. auriga targeted the most diverse range of epibionts, removing significant amounts of algae, sponges, tunicates, and anemones. These results suggest that foraging by butterflyfishes can substantially reduce biofouling on economically-important tropical bivalves.

  18. Ultrastructural study of the effect of cyclophosphamide on the growth area of incisor teeth of DBA/2 and C57BL/6 mice.

    Science.gov (United States)

    Anton, E

    1996-04-01

    The effect of a single dose of 300 mg/kg of cyclophosphamide (CY) on the ultrastructure of the basal area of lower incisor teeth was investigated in two strains of mice (DBA/2 and C57BL/6) which are very differently affected by the delayed toxicity of CY. As in the rat, CY produced necrosis in the primitive mesenchymal cells and preodontoblasts of the pulp. Moreover, important changes were noticed in the associated layers of the enamel organ (presumptive stratum intermedium cells and stellate reticulum); thus, most of the cells displayed degenerative changes including extensive vacuolization, cytoplasm sequestration and variable nuclear alterations ranging from relative integrity to complete disorganization. In contrast, non-dividing columnar odontoblasts and ameloblasts were not affected by the drug. The alterations appeared as early as 21 hours after CY and progressed in the following 2 and 3 days. Normality of the formative tooth end was regained 7 days after CY. These results indicate that in addition to the effect on the pulp, CY produces severe cytopathological changes in the cells of the stratum intermedium and stellate reticulum of the enamel organ. The different sensitivity of DBA/2 and C57BL/6 mice to the delayed toxicity of CY does not seem to be related to its effect on odontogenesis since both strains showed the same response to CY in this respect.

  19. Brucellosis of the common vole (Microtus arvalis).

    Science.gov (United States)

    Hubálek, Z; Scholz, H C; Sedlácek, I; Melzer, F; Sanogo, Y O; Nesvadbová, J

    2007-01-01

    A systemic disease occurred in a wild population of the common vole Microtus arvalis in South Moravia (Czech Republic) during the years 1999-2003. Acute infections were characterized by edema of extremities, occasionally with colliquating abscesses, arthritis, lymphadenitis, perforations of the skin resulting from colliquated abscesses, orchitis, and peritoneal granulomas. From the clinical samples, small Gram-negative coccobacilli were isolated and identified as Ochrobactrum intermedium by API 20NE and colistin sensitivity profiles. However, subsequent rrs (16S rRNA) and recA (recombinase A) gene sequencing analysis of two isolates (CCM 4915=CAPM 6434; CCM 4916=CAPM 6435) identified them as Brucella sp. with sequence identities of 100% to other Brucella spp. Analysis of the omp2a/b genes confirmed the two isolates as Brucella. In AMOS polymerase chain reaction (PCR), a 2000-bp fragment was generated that was not seen in other brucellae. Experimental infection of outbred ICR mice with these isolates resulted in a mortality rate of 50%. Based on the results of the molecular investigations and the mortality observed in experimentally infected mice we conclude that the epizootic was caused by Brucella sp. and not by Ochrobactrum intermedium. The study demonstrates the limitations of commercial biochemical test systems in accurately differentiating among Ochrobactrum and Brucella.

  20. KOMPOSISI POHON DI BUKIT ACE KELURAHAN GUNUNG SARIK KECAMATAN KURANJI PADANG

    Directory of Open Access Journals (Sweden)

    Rizki Rizki

    2017-03-01

    Full Text Available The existence of trees in a region could be threatened because of their good forest damage due to natural factors such as fires and landslides, as well as human activities mainly due to illegal logging. This study aims to determine the composition of a tree in Bukit Ace in the sub Kuranji Padang. In this study using a survey method using a combination of methods to make trransek track and map examples. Transects were observed along the 20 meter by 10 mapped sample with a size of 10x10 meter Analysis of vegetation cover density, frequency, dominance, importance and diversity index. Based on research conducted at the Mount Ace Village of Mount Sarik District of Kuranji Padang, tree composition consists of 13 species and 172 individuals where species of trees by people who at least is Anacardium ocidentale ie 3 people whereas species with people most is Xerospermum intermedium (31 people , Important values ranging between 6.107% - 60.327%, of tree species that have significant value the highest is Xerospermum intermedium is 60.327% and tree species with important value lows are Evodia malayana namely 6.107%, while based on diversity index of forest in Bukit Ace classified as being abundant with value ID 2,351.

  1. Ecological and geographical characteristics of algal communities on gastropod shells of the river Uzh

    Directory of Open Access Journals (Sweden)

    N. M. Korniichuk

    2017-07-01

    Full Text Available Freshwater molluscs serve as test objects in the ecological monitoring of the environment, because they are able to extract in indicator quantity from the environment and accumulate in their bodies radionuclides, various macro- and micronutrients, toxic substances of inorganic and organic origin, and so on. The gastropods are a taxonomically diverse, ecologically plastic and rather widespread group of aquatic organisms, whose role in the life of freshwater ecosystems is very important. Molluscs often have various interactions in biogeocenoses that determines their trophic net. As a rule, these interactions occur in the form of ectocommensalism, endocommensalism, supercrescence, predation or parasitism. The latter type of interaction is the subject of many studies, but the epibionts of gastropods and bivalves have practically not been studied and this research is an effort towards filling this gap. Species composition of algal epibionts identifies specific sensitivity to the effects of certain environmental factors and reflects the processes occurring in their ecosystem water bodies. This determines their efficient use for analyzing changes of water bodies as aquatic habitat, particularly in terms of complex anthropogenic pressure on aquatic ecosystems. The aim of the research was to determine the ecological characteristics of algal communities on gastropod shells: Lymnaea stagnalis, L. auricularia and Viviparus viviparus (the Uzh river, Korosten district, Zhytomyr region. Identified microalgae communities were grouped and studied according to such indices as: confinedness to the habitat (substrate, temperature, fluidity and water oxygenating, saprobiological characteristics according to the Pantle-Buck system in the modification of Sladecek and Watanabe, salinity according to Kolbe’s system, pH at Hustedt scale in the interpretation of M. M. Davydova and geographical limitations of the objects of study. Algal fouling on the shells L. stagnalis

  2. Infestation and morphological identification of the stalked epizoic barnacle Octolasmis on the blue crab Portunus pelagicus from the Red Sea

    Science.gov (United States)

    Afifi Khattab, Rafat

    2017-09-01

    The intensity of infestation of the epizoic stalked barnacle Octolasmis on the blue crab was calculated for a total of 180 individuals collected around Jeddah, the western Red Sea Saudi coast. More than 90% of the crabs were found bearing the Octolasmis at a prevalence rate of 92% and mean intensity of 18.5±18.6 (0-127 epibiont per host). The intensity of infestation increased with host size in the range 90-135 mm. Generally, females were more infested (69%) than the males (31%). Octolasmis angulata occurred mostly on the gills, and the lower side of the gill chambers was more infested (84%) than the upper side (16%) and the left side of gills was also more infested than the right side in both males and females. Further studies are still needed to examine the commensal relationship and its impact on the fishery market of the Red Sea blue crab populations.

  3. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species.

    Directory of Open Access Journals (Sweden)

    Nathan J Robinson

    Full Text Available The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals.

  4. Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.

    Science.gov (United States)

    Hügler, Michael; Petersen, Jillian M; Dubilier, Nicole; Imhoff, Johannes F; Sievert, Stefan M

    2011-01-07

    The shrimp Rimicaris exoculata dominates the faunal biomass at many deep-sea hydrothermal vent sites at the Mid-Atlantic Ridge. In its enlarged gill chamber it harbors a specialized epibiotic bacterial community for which a nutritional role has been proposed. We analyzed specimens from the Snake Pit hydrothermal vent field on the Mid-Atlantic Ridge by complementing a 16S rRNA gene survey with the analysis of genes involved in carbon, sulfur and hydrogen metabolism. In addition to Epsilon- and Gammaproteobacteria, the epibiotic community unexpectedly also consists of Deltaproteobacteria of a single phylotype, closely related to the genus Desulfocapsa. The association of these phylogenetic groups with the shrimp was confirmed by fluorescence in situ hybridization. Based on functional gene analyses, we hypothesize that the Gamma- and Epsilonproteobacteria are capable of autotrophic growth by oxidizing reduced sulfur compounds, and that the Deltaproteobacteria are also involved in sulfur metabolism. In addition, the detection of proteobacterial hydrogenases indicates the potential for hydrogen oxidation in these communities. Interestingly, the frequency of these phylotypes in 16S rRNA gene clone libraries from the mouthparts differ from that of the inner lining of the gill chamber, indicating potential functional compartmentalization. Our data show the specific association of autotrophic bacteria with Rimicaris exoculata from the Snake Pit hydrothermal vent field, and suggest that autotrophic carbon fixation is contributing to the productivity of the epibiotic community with the reductive tricarboxylic acid cycle as one important carbon fixation pathway. This has not been considered in previous studies of carbon fixation and stable carbon isotope composition of the shrimp and its epibionts. Furthermore, the co-occurrence of sulfur-oxidizing and sulfur-reducing epibionts raises the possibility that both may be involved in the syntrophic exchange of sulfur compounds

  5. Deeply hidden inside introduced biogenic structures - Pacific oyster reefs reduce detrimental barnacle overgrowth on native blue mussels

    Science.gov (United States)

    Buschbaum, Christian; Cornelius, Annika; Goedknegt, M. Anouk

    2016-11-01

    In sedimentary coastal ecosystems shells of epibenthic organisms such as blue mussels (Mytilus edulis) provide the only major attachment surface for barnacle epibionts, which may cause detrimental effects on their mussel basibionts by e.g. reducing growth rate. In the European Wadden Sea, beds of native blue mussels have been invaded by Pacific oysters Crassostrea gigas, which transformed these beds into mixed reefs of oysters with mussels. In this study, we determined the spatial distribution of M. edulis and their barnacle epibionts (Semibalanus balanoides) within the reef matrix. Mean mussel density near the bottom was about twice as high compared to the mussel density near the top of an oyster reef, whereas barnacles on mussels showed a reversed pattern. Barnacle dry weight per mussel was on average 14 times higher near the top than at the bottom. This pattern was confirmed by experimentally placing clean M. edulis at the top and on the bottom of oyster reefs at two sites in the Wadden Sea (island of Texel, The Netherlands; island of Sylt, Germany). After an experimental period of five weeks (April and May 2015, the main settlement period of S. balanoides), the number of barnacles per mussel was at both sites significantly higher on mussels near the top compared to near the bottom. We conclude that the oyster reef matrix offers a refuge for M. edulis: inside reefs they are not only better protected against predators but also against detrimental barnacle overgrowth. This study shows that alien species can cause beneficial effects for native organisms and should not be generally considered as a risk for the recipient marine ecosystems.

  6. Parasitic outbreak of the copepod Balaenophilus manatorum in neonate loggerhead sea turtles (Caretta caretta) from a head-starting program.

    Science.gov (United States)

    Crespo-Picazo, J L; García-Parraga, D; Domènech, F; Tomás, J; Aznar, F J; Ortega, J; Corpa, J M

    2017-06-02

    Diseases associated to external parasitosis are scarcely reported in sea turtles. During the last decades several organism have been documented as a part of normal epibiont community connected to sea turtles. The copepod Balaenophilus manatorum has been cited as a part of epibiont fauna with some concern about its parasitic capacity. This study serves three purposes, i.e. (i) it sheds light on the type of life style that B. manatorum has developed with its hosts, particularly turtles; (ii) it makes a cautionary note of the potential health risks associated with B. manatorum in sea turtles under captivity conditions and in the wild, and (iii) it provides data on effective treatments against B. manatorum. We report for the first time a massive infestation of the copepod B. manatorum and subsequent acute mortality in a group of loggerhead sea turtle hatchlings. Four-month-old turtles from a head-starting program started exhibiting excitatory and fin rubbing behavior preceding an acute onset of lethargy, skin ulceration and death in some animals. All the individuals (n = 57) were affected by severe copepod load and presented different degrees of external macroscopic skin lesions. The ventral area of front flippers, axillar and pericloacal skin were mostly affected, and were the main parasite distribution regions. Copepods were also detected on plastron and carapace sutures. The gut contents of B. manatorum reacted positively for cytokeratin, indicating consumption of turtle skin. Severe ulcerative necrotic dermatitis and large amount of bacteria presence were the major histopathological findings. Individual fresh water immersion for 10 min and lufenuron administration (0.1 ppm) to the water system every 2 weeks proved effective for removing turtle parasites and to control re-infestation, respectively. The results from our study clearly indicated that B. manatorum individuals consume turtle skin. The pathological effects of this agent and the potential implications

  7. Diversity and abundance of invertebrate epifaunal assemblages associated with gorgonians are driven by colony attributes

    KAUST Repository

    Curdia, Joao

    2015-03-20

    The present study aimed to explicitly quantify the link between the attributes of shallow-water gorgonian colonies (Octocorallia: Alcyonacea) and the ecological patterns of associated non-colonial epifaunal invertebrates. Based on multiple regression analysis, we tested the contribution of several attributes (colony height, width, and area, fractal dimension as a measure of colony complexity, lacunarity as a measure of the heterogeneity, and “colonial” epibiont cover) to abundance and taxonomic richness of associated assemblages. The results highlight the variation in the response of epifaunal assemblages to the gorgonian colony characteristics. The nature and intensity of the relationships were gorgonian species-dependent and varied from one taxonomic group to another. For both gorgonian species analyzed, the strongest predictor of species richness and abundance of the epifaunal assemblages was “colonial” epibiont cover, possibly due to a trophic effect (direct or indirect enhancement of food availability) combined with the surface available for colonization (species–area effect). Although structural complexity is usually indicated as the main driver for rich and abundant coral-associated assemblages, no significant relationship was observed between fractal dimension and the community descriptors; lacunarity, which reflects the sizes of the inter-branch spaces, was only linked to taxonomic richness in the assemblages associated with Leptogorgia lusitanica. The validity of the paradigm that structural complexity enhances biodiversity may be scale-dependent. In the case of gorgonians, the effect of complexity at the “garden” level may be more relevant than at the individual colony level. This reinforces the need for the conservation of gorgonian aggregation areas as a whole in order to preserve host diversity and size structure. © 2015 Springer-Verlag Berlin Heidelberg

  8. FIRST REPORT OF METALLO-β-LACTAMASES PRODUCING Enterobacter spp. STRAINS FROM VENEZUELA

    Science.gov (United States)

    Martínez, Dianny; Rodulfo, Hectorina E.; Rodríguez, Lucy; Caña, Luisa E.; Medina, Belkis; Guzman, Militza; Carreño, Numirin; Marcano, Daniel; Donato, Marcos De

    2014-01-01

    Clinical strains of Enterobacter were isolated from Cumana's Central Hospital in Venezuela, and classified as E. cloacae (21), E. aerogenes (7), E. intermedium (1), E. sakazakii (1) and three unclassified. The strains showed high levels of resistance, especially to SXT (58.1%), CRO (48.8%), CAZ (46.6%), PIP (46.4%), CIP (45.2%) and ATM (43.3%). This is the first report for South America of bla VIM-2 in two E. cloacae and one Enterobacter sp., which also showed multiple mechanisms of resistance. Both E. cloacae showed bla TEM-1, but only one showed bla CTX-M-15 gene, while no bla SHV was detected. PMID:24553611

  9. Rehabilitation materials from surface- coal mines in western U.S.A. III. Relations between elements in mine soil and uptake by plants.

    Science.gov (United States)

    Severson, R.C.; Gough, L.P.

    1984-01-01

    Plant uptake of Cd, Co, Cu, Fe, Mn, Ni, Pb and Zn from mine soils was assessed using alfalfa Medicago sativa, sainfoin Onobrychis viciaefolia, smooth brome Bromus inermis, crested wheatgrass Agropyron cristatum, slender wheatgrass A. trachycaulum and intermediate wheatgrass A. intermedium; mine soil (cover-soil and spoil material) samples were collected from rehabilitated areas of 11 western US surface-coal mines in North Dakota, Montana, Wyoming and Colorado. Correlations between metals in plants and DTPA-extractable metals from mine soils were generally not statistically significant and showed no consistent patterns for a single metal or for a single plant species. Metal uptake by plants, relative to amounts in DTPA extracts of mine soil, was positively related to mine soil organic matter content or negatively related to mine soil pH. DTPA-extractable metal levels were significantly correlated with mine soil pH and organic-matter content.-from Authors

  10. Molecular cytogenetic (FISH and genome analysis of diploid wheatgrasses and their phylogenetic relationship.

    Directory of Open Access Journals (Sweden)

    Gabriella Linc

    Full Text Available This paper reports detailed FISH-based karyotypes for three diploid wheatgrass species Agropyron cristatum (L. Beauv., Thinopyrum bessarabicum (Savul.&Rayss A. Löve, Pseudoroegneria spicata (Pursh A. Löve, the supposed ancestors of hexaploid Thinopyrum intermedium (Host Barkworth & D.R.Dewey, compiled using DNA repeats and comparative genome analysis based on COS markers. Fluorescence in situ hybridization (FISH with repetitive DNA probes proved suitable for the identification of individual chromosomes in the diploid JJ, StSt and PP genomes. Of the seven microsatellite markers tested only the (GAAn trinucleotide sequence was appropriate for use as a single chromosome marker for the P. spicata AS chromosome. Based on COS marker analysis, the phylogenetic relationship between diploid wheatgrasses and the hexaploid bread wheat genomes was established. These findings confirmed that the J and E genomes are in neighbouring clusters.

  11. Impregnation of soft biological specimens with thermosetting resins and elastomers.

    Science.gov (United States)

    von Hagens, G

    1979-06-01

    A new method for impregnation of biological specimens with thermosetting resins and elastomers is described. The method has the advantage that the original relief of the surface is retained. The impregnation is carried out by utilizing the difference between the high vapor tension of the intermedium (e.g., methylene chloride) and the low vapor tension of the solution to be polymerized. After impregnation, the specimen is subject to polymerization conditions without surrounding embedding material. The optical and mechanical properties can be selected by proper choice from various kinds of resins and different procedures, for example, by complete or incomplete impregnation. Acrylic resins, polyester resins, epoxy resins, polyurethanes and silicone rubber have been found suitable for the method. Excellent results have been obtained using transparent silicone rubber since after treatment the specimens are still flexible and resilient, and have retained their natural appearance.

  12. Dicty_cDB: Contig-U11598-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available EF534375 |pid:none) Thinopyrum intermedium SGT1 cDNA, ... 49 2e-04 AY365188_1( AY365188 |pid:none) Nicotiana...hqi*nn*lnn*fkkk--- ---skry**yapiyilqlhmvidh*h*n*ln*dqm*mlqqmmaqpplhiatdaedieick sliekgailkmdsdgltpl... Ear... 50 0.13 1 ( EK177296 ) 1095458104244 Global-Ocean-Sampling_GS-31-01-01-1....7 (Q9D4H7) RecName: Full=LON peptidase N-terminal domain and RING ... 57 5e-07 AE014188_398( AE014188 |pid:n... homolog B; Short=... 53 1e-05 (Q496Y0) RecName: Full=LON peptidase N-terminal domain and RING ... 53 1e-05

  13. Dicty_cDB: Contig-U11104-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available 29085_1( AF129085 |pid:none) Homo sapiens carboxy terminus of H... 52 3e-05 ( P53...ium erythraeum IMS101... 48 3e-04 EF534375_1( EF534375 |pid:none) Thinopyrum intermedium SGT1 cDNA, ... 48 3....004 4 ( EX867252 ) AUAO2324.fwd AUAO Karenia brevis Karbr Dark-phase... 44 0.007 2 ( ER272186 ) 1095527125230 Global-Ocean-Sampli...ng_GS-33-01-01-1... 44 0.008 2 ( EK698342 ) 1092403983752 Global-Ocean-Sampling_GS-33-...3e-08 AK291555_1( AK291555 |pid:none) Homo sapiens cDNA FLJ76863 complet... 62 3e-08 ( O54981 ) RecName: Full=Stress-induced

  14. Improvement of biodegradability of oil wastewater contained PAM by pretreatment with Fenton oxidation

    International Nuclear Information System (INIS)

    Bao, M.; Wang, N.

    2008-01-01

    The use of polymer flooding in enhanced oil recovery operations has resulted in higher levels of polyacrylamide (PAM) found in oil wastewater. PAM is harmful to the environment, particularly the monomer acrylamide that is generated from PAM degradation. In this study, PAM derived from oil wastewater was pretreated by Fenton oxidation. This oxidation method is based on the use of a mixture of H 2 O 2 and iron salts which produce hydroxyl radicals in acidic conditions. The method offers a cost-effective source of hydroxyl radicals, using easy-to-handle reagents. The purpose of this study was to transform PAM to biodegradable intermediums. The optimal conditions for the Fenton reactions were also determined and described. Under optimal conditions, the removal ratios of PAM and chemical oxygen demand (COD) were 83.8 and 77 per cent respectively. It was concluded that Fenton's oxidation is an effective treatment to improved the biodegradability of PAM. 14 refs., 1 tab., 7 figs

  15. Sur les intermédia

    OpenAIRE

    Higgins, Dick

    2017-01-01

    I. Dans “Intermedia”, Higgins introduit deux substantifs : intermedium et son pluriel intermedia. L'auteur commence par noter les changements sociaux frappant son époque, qui passe d’une société divisée, de castes, à une société égalitaire sans classe. À son sens, l'irruption, dans la sphère de l'art, d’œuvres inclassables, venant se loger entre les médiums établis, participe du même esprit. Il appelle ces œuvres hybrides des « intermédia ». Elles peuvent être à la croisée de différents médiu...

  16. Fine structure and development of the collar enamel in gars, Lepisosteus oculatus, Actinopterygii

    Science.gov (United States)

    Sasagawa, Ichiro; Ishiyama, Mikio; Yokosuka, Hiroyuki; Mikami, Masato

    2008-06-01

    The fine structure of collar enamel and the cells constituting the enamel organ during amelogenesis in Lepisosteus oculatus was observed by light, scanning electron and transmission electron microscopy. In the enamel, slender crystals were arranged perpendicular to the surface and the stripes that were parallel to the surface were observed, suggesting that the enamel in Lepisosteus shares common morphological features with that in sarcopterygian fish and amphibians. Ameloblasts containing developed Golgi apparatus, rough endoplasmic reticulum (rER) and secretory granules were found in the secretory stage. In the maturation stage, a ruffled border was not seen at the distal end of the ameloblasts, while many mitochondria and lysosome-like granules were obvious in the distal cytoplasm. The enamel organ consisted of the outer dental epithelial cells, stratum reticulum cells and ameloblasts, but there was no stratum intermedium. It is likely that the ameloblasts have less absorptive function in comparison with the inner dental epithelial cells facing cap enameloid.

  17. Scalable Quantum Information Transfer between Individual Nitrogen-Vacancy Centers by a Hybrid Quantum Interface

    International Nuclear Information System (INIS)

    Pei Pei; He-Fei Huang; Yan-Qing Guo; He-Shan Song

    2016-01-01

    We develop a design of a hybrid quantum interface for quantum information transfer (QIT), adopting a nanomechanical resonator as the intermedium, which is magnetically coupled with individual nitrogen-vacancy centers as the solid qubits, while capacitively coupled with a coplanar waveguide resonator as the quantum data bus. We describe the Hamiltonian of the model, and analytically demonstrate the QIT for both the resonant interaction and large detuning cases. The hybrid quantum interface allows for QIT between arbitrarily selected individual nitrogen-vacancy centers, and has advantages of the scalability and controllability. Our methods open an alternative perspective for implementing QIT, which is important during quantum storing or processing procedures in quantum computing. (paper)

  18. [Histochemical and histological investigations on the vagina of the beagle she-dog during various functional conditions (author's transl)].

    Science.gov (United States)

    Wrobel, K H; El Etreby, M F; Günzel, P

    1975-01-01

    Histotopochemistry and histology of vaginal epithelium in female beagles were studied during oestrus, metoestrus-dioestrus, post partum period and at days 20, 30, 40, 50, 60 of pregnancy. During oestrus the epithelium is uniform throughout the whole vagina: it presents itself as a high, uncornified, stratified squamous epithelium with some glycogen and lipid droplets but devoid of leucocytes. The intercellular gaps of the stratum intermedium give strong reactions for ATPase and alkaline phosphatase. The activities of oxidoreductases studied decrease continuously from basal to apical. During gravidity, post partum period and metoestrus-dioestrus distinct morphological and histochemical differences can be stated between the cranial and caudal vaginal portions. Caudal vaginal epithelium outside oestrus remains of stratified squamous type. It exhibits strong mucification during pregnancy. The PAS-positive mucous substances prefer a position in the enlarged intercellular gaps of stratum intermedium and superficiale. During pregnancy the epithelium is relatively rich in acid and completely devoid of alkaline phosphatases. Outside oestrus the epithelium of the cranial vaginal region is a relatively flat, stratified columnar one and contains leucocytes with regularity. Also the cranial vaginal portion undergoes mucification during pregnancy with a maximum about day 33. The mucous material is situated intracellularly and not within the intercellular gaps. Further, larger intraepithelial mucus cysts are observed. Alkaline phosphatase is found during gravidity in the basal region and an adluminal border of the epithelium. The reactions for oxidoreductases are strongest in the columnar cell layer which shows more functional adaptations than the remainder of the epithelium. Histochemical tests for beta-D-glucuronidase and leucine aminopeptidase give negative results in the whole vagina during all different functional stages studied.

  19. New developmental evidence clarifies the evolution of wrist bones in the dinosaur-bird transition.

    Directory of Open Access Journals (Sweden)

    João Francisco Botelho

    2014-09-01

    Full Text Available From early dinosaurs with as many as nine wrist bones, modern birds evolved to develop only four ossifications. Their identity is uncertain, with different labels used in palaeontology and developmental biology. We examined embryos of several species and studied chicken embryos in detail through a new technique allowing whole-mount immunofluorescence of the embryonic cartilaginous skeleton. Beyond previous controversy, we establish that the proximal-anterior ossification develops from a composite radiale+intermedium cartilage, consistent with fusion of radiale and intermedium observed in some theropod dinosaurs. Despite previous claims that the development of the distal-anterior ossification does not support the dinosaur-bird link, we found its embryonic precursor shows two distinct regions of both collagen type II and collagen type IX expression, resembling the composite semilunate bone of bird-like dinosaurs (distal carpal 1+distal carpal 2. The distal-posterior ossification develops from a cartilage referred to as "element x," but its position corresponds to distal carpal 3. The proximal-posterior ossification is perhaps most controversial: It is labelled as the ulnare in palaeontology, but we confirm the embryonic ulnare is lost during development. Re-examination of the fossil evidence reveals the ulnare was actually absent in bird-like dinosaurs. We confirm the proximal-posterior bone is a pisiform in terms of embryonic position and its development as a sesamoid associated to a tendon. However, the pisiform is absent in bird-like dinosaurs, which are known from several articulated specimens. The combined data provide compelling evidence of a remarkable evolutionary reversal: A large, ossified pisiform re-evolved in the lineage leading to birds, after a period in which it was either absent, nonossified, or very small, consistently escaping fossil preservation. The bird wrist provides a modern example of how developmental and paleontological

  20. Anti-insect potential of lectins from Arisaema species towards Bactrocera cucurbitae.

    Science.gov (United States)

    Kaur, Manpreet; Singh, Kuljinder; Rup, Pushpinder J; Kamboj, Sukhdev Singh; Singh, Jatinder

    2009-11-01

    Bactrocera cucurbitae (Coquillett), also known as melon fruit fly, is one of the major insect pests of cucurbits in several parts of Asia, Africa and Pacific. In the present investigation, effect of lectins from two sources i.e. Arisaema intermedium Blume and Arisaema wallichianum Hook f. (Family-Araceae) has been studied on the development of second instar larvae of melon fruit fly. The lectins were incorporated separately in artificial diet at a concentration of 10 to 160 microg ml(-1) and fed adlibitum to the second instar larvae. Both the lectins were found to prolong the development period and significantly inhibited the pupation and emergence in a dose dependent manner. Total development period was found to be prolonged by 3.5 and 2.3 days in case of larvae fed on artificial diet containing A. intermedium (AIL) and A. wallichianum (AWL), respectively. LC50 values calculated on the basis of adult emergence came out to be 32.8 and 29 microg ml(-1) for AIL and AWL, respectively. Both the lectins tested, were found to increase the activity of esterases as larvae proceeded from 24 to 72 hr of treatment. The activity of acid phosphatase decreased significantly in larvae reared on diet containing LC50 of AIL, while in case of AWL significant decrease was observed only at 72 hr of treatment. Alkaline phosphatase activity decreased significantly on treatment with both of these lectins. These results showed that AIL and AWL have promising anti-insect potential. So, lectin gene/s from either of these species can be cloned and subsequently can be employed to develop transgenics to control melon fruit flies specifically and insect pests in general. This approach could be used as a part of Integrated pest management (IPM) strategies.

  1. An amelogenin mutation leads to disruption of the odontogenic apparatus and aberrant expression of Notch I

    Science.gov (United States)

    Chen, Xu; Li, Yong; Alawi, Faizan; Bouchard, Jessica R.; Kulkarni, Ashok B.; Gibson, Carolyn W.

    2012-01-01

    BACKGROUND Amelogenins are highly conserved proteins secreted by ameloblasts in the dental organ of developing teeth. These proteins regulate dental enamel thickness and structure in humans and mice. Mice that express an amelogenin transgene with a P70T mutation (TgP70T) develop abnormal epithelial proliferation in an amelogenin null (KO) background. Some of these cellular masses have the appearance of proliferating stratum intermedium, which is the layer adjacent to the ameloblasts in unerupted teeth. As Notch proteins are thought to constitute the developmental switch that separates ameloblasts from stratum intermedium, these signaling proteins were evaluated in normal and proliferating tissues. METHODS Mandibles were dissected for histology and immunohistochemistry using Notch I antibodies. Molar teeth were dissected for western blotting and RT-PCR for evaluation of Notch levels through imaging and statistical analyses. RESULTS Notch I was immunolocalized to ameloblasts of TgP70TKO mice, KO ameloblasts stained, but less strongly, and wild-type teeth had minimal staining. Cells within the proliferating epithelial cell masses were positive for Notch I and had an appearance reminiscent of calcifying epithelial odontogenic tumor with amyloid-like deposits. Notch I protein and mRNA were elevated in molar teeth from TgP70TKO mice. CONCLUSION Expression of TgP70T leads to abnormal structures in mandibles and maxillae of mice with the KO genetic background and these mice have elevated levels of Notch I in developing molars. As cells within the masses also express transgenic amelogenins, development of the abnormal proliferations suggests communication between amelogenin producing cells and the proliferating cells, dependent on the presence of the mutated amelogenin protein. PMID:20923441

  2. Cell turnover in the odontogenic organ of the rat incisor as visualized by graphic reconstructions following a single injection of 3H-thymidine.

    Science.gov (United States)

    Smith, C E

    1980-07-01

    Turnover of cells within the odontogenic organ was studied in three dimensions by preparing serial sections of incisors from young male rats killed at various times following a single intraperitoneal injection of 1 muCi/g body weight of 3H-thymidine. Radioautographs showed that at 1 hour after injection labeled cells were present in all cell layers throughout the entire depth of the odontogenic organ. They were encountered frequently within the inner dental epithelium and stratum intermedium but appeared less abundant within the stellate reticulum and outer dental epithelium. With time, the frequency of labeled cells in each layer declined progressively, and more rapidly at the anterior and labial side of the odontogenic organ than toward its posterior and lingual side. Hence labeled cells were observed over the longest time interval in regions where cell layers were in closest proximity to the opening of the apical foramen, that is, near the apical and cervical loops. By 32 days after injection, numerous labeled cells could still be identified within the outer dental epithelium and stellate reticulum near the apical loop (bulbous part of the odontogenic organ) and the outer dental epithelium near the cervical loops ("U"-shaped part of the odontogenic organ). These findings support the hypothesis that cells originate within the bulbous part of the odontogenic organ and migrate anteriorly through the "U"-shaped and root sheath parts of the odontogenic organ during renewal of the incisor. It appears that individual stem cell compartments may be maintained for surface (outer/inner dental epithelium) and intermediate layers (stellate reticulum/stratum intermedium) in the odontogenic epithelium.

  3. A treatment plant receiving waste water from multiple bulk drug manufacturers is a reservoir for highly multi-drug resistant integron-bearing bacteria.

    Directory of Open Access Journals (Sweden)

    Nachiket P Marathe

    Full Text Available The arenas and detailed mechanisms for transfer of antibiotic resistance genes between environmental bacteria and pathogens are largely unclear. Selection pressures from antibiotics in situations where environmental bacteria and human pathogens meet are expected to increase the risks for such gene transfer events. We hypothesize that waste-water treatment plants (WWTPs serving antibiotic manufacturing industries may provide such spawning grounds, given the high bacterial densities present there together with exceptionally strong and persistent selection pressures from the antibiotic-contaminated waste. Previous analyses of effluent from an Indian industrial WWTP that processes waste from bulk drug production revealed the presence of a range of drugs, including broad spectrum antibiotics at extremely high concentrations (mg/L range. In this study, we have characterized the antibiotic resistance profiles of 93 bacterial strains sampled at different stages of the treatment process from the WWTP against 39 antibiotics belonging to 12 different classes. A large majority (86% of the strains were resistant to 20 or more antibiotics. Although there were no classically-recognized human pathogens among the 93 isolated strains, opportunistic pathogens such as Ochrobactrum intermedium, Providencia rettgeri, vancomycin resistant Enterococci (VRE, Aerococcus sp. and Citrobacter freundii were found to be highly resistant. One of the O. intermedium strains (ER1 was resistant to 36 antibiotics, while P. rettgeri (OSR3 was resistant to 35 antibiotics. Class 1 and 2 integrons were detected in 74/93 (80% strains each, and 88/93 (95% strains harbored at least one type of integron. The qPCR analysis of community DNA also showed an unprecedented high prevalence of integrons, suggesting that the bacteria living under such high selective pressure have an appreciable potential for genetic exchange of resistance genes via mobile gene cassettes. The present study provides

  4. Simultaneous heat integration and techno-economic optimization of Organic Rankine Cycle (ORC) for multiple waste heat stream recovery

    International Nuclear Information System (INIS)

    Yu, Haoshui; Eason, John; Biegler, Lorenz T.; Feng, Xiao

    2017-01-01

    In the past decades, the Organic Rankine Cycle (ORC) has become a promising technology for low and medium temperature energy utilization. In refineries, there are usually multiple waste heat streams to be recovered. From a safety and controllability perspective, using an intermedium (hot water) to recover waste heat before releasing heat to the ORC system is more favorable than direct integration. The mass flowrate of the intermediate hot water stream determines the amount of waste heat recovered and the final hot water temperature affects the thermal efficiency of ORC. Both, in turn, exert great influence on the power output. Therefore, the hot water mass flowrate is a critical decision variable for the optimal design of the system. This study develops a model for techno-economic optimization of an ORC with simultaneous heat recovery and capital cost optimization. The ORC is modeled using rigorous thermodynamics with the concept of state points. The task of waste heat recovery using the hot water intermedium is modeled using the Duran-Grossmann model for simultaneous heat integration and process optimization. The combined model determines the optimal design of an ORC that recovers multiple waste heat streams in a large scale background process using an intermediate heat transfer stream. In particular, the model determines the optimal heat recovery approach temperature (HRAT), the utility load of the background process, and the optimal operating conditions of the ORC simultaneously. The effectiveness of this method is demonstrated with a case study that uses a refinery as the background process. Sensitivity of the optimal solution to the parameters (electricity price, utility cost) is quantified in this paper. - Highlights: • A new model for Organic Rankine cycle design optimization is presented. • Process heat integration and ORC are considered simultaneously. • Rigorous equation oriented models of the ORC are used for accurate results. • Impact of working

  5. Microorganisms and heavy metals associated with atmospheric deposition in a congested urban environment of a developing country: Sri Lanka.

    Science.gov (United States)

    Weerasundara, Lakshika; Amarasekara, R W K; Magana-Arachchi, D N; Ziyath, Abdul M; Karunaratne, D G G P; Goonetilleke, Ashantha; Vithanage, Meththika

    2017-04-15

    The presence of bacteria and heavy metals in atmospheric deposition were investigated in Kandy, Sri Lanka, which is a typical city in the developing world with significant traffic congestion. Atmospheric deposition samples were analyzed for Al, Cr, Mn, Fe, Ni, Cu, Zn, Cd and Pb which are heavy metals common to urban environments. Al and Fe were found in high concentrations due to the presence of natural sources, but may also be re-suspended by vehicular traffic. Relatively high concentrations of toxic metals such as Cr and Pb in dissolved form were also found. High Zn loads can be attributed to vehicular emissions and the wide use of Zn coated roofing materials. The metal loads in wet deposition showed higher concentrations compared to dry deposition. The metal concentrations among the different sampling sites significantly differ from each other depending on the traffic conditions. Industrial activities are not significant in Kandy City. Consequently, the traffic exerts high influence on heavy metal loadings. As part of the bacterial investigations, nine species of culturable bacteria, namely; Sphingomonas sp., Pseudomonas aeruginosa, Pseudomonas monteilii, Klebsiella pneumonia, Ochrobactrum intermedium, Leclercia adecarboxylata, Exiguobacterium sp., Bacillus pumilus and Kocuria kristinae, which are opportunistic pathogens, were identified. This is the first time Pseudomonas monteilii and Ochrobactrum intermedium has been reported from a country in Asia. The culturable fraction constituted ~0.01 to 10%. Pigmented bacteria and endospore forming bacteria were copious in the atmospheric depositions due to their capability to withstand harsh environmental conditions. The presence of pathogenic bacteria and heavy metals creates potential human and ecosystem health risk. Copyright © 2017 Elsevier B.V. All rights reserved.

  6. New developmental evidence clarifies the evolution of wrist bones in the dinosaur-bird transition.

    Science.gov (United States)

    Botelho, João Francisco; Ossa-Fuentes, Luis; Soto-Acuña, Sergio; Smith-Paredes, Daniel; Nuñez-León, Daniel; Salinas-Saavedra, Miguel; Ruiz-Flores, Macarena; Vargas, Alexander O

    2014-09-01

    From early dinosaurs with as many as nine wrist bones, modern birds evolved to develop only four ossifications. Their identity is uncertain, with different labels used in palaeontology and developmental biology. We examined embryos of several species and studied chicken embryos in detail through a new technique allowing whole-mount immunofluorescence of the embryonic cartilaginous skeleton. Beyond previous controversy, we establish that the proximal-anterior ossification develops from a composite radiale+intermedium cartilage, consistent with fusion of radiale and intermedium observed in some theropod dinosaurs. Despite previous claims that the development of the distal-anterior ossification does not support the dinosaur-bird link, we found its embryonic precursor shows two distinct regions of both collagen type II and collagen type IX expression, resembling the composite semilunate bone of bird-like dinosaurs (distal carpal 1+distal carpal 2). The distal-posterior ossification develops from a cartilage referred to as "element x," but its position corresponds to distal carpal 3. The proximal-posterior ossification is perhaps most controversial: It is labelled as the ulnare in palaeontology, but we confirm the embryonic ulnare is lost during development. Re-examination of the fossil evidence reveals the ulnare was actually absent in bird-like dinosaurs. We confirm the proximal-posterior bone is a pisiform in terms of embryonic position and its development as a sesamoid associated to a tendon. However, the pisiform is absent in bird-like dinosaurs, which are known from several articulated specimens. The combined data provide compelling evidence of a remarkable evolutionary reversal: A large, ossified pisiform re-evolved in the lineage leading to birds, after a period in which it was either absent, nonossified, or very small, consistently escaping fossil preservation. The bird wrist provides a modern example of how developmental and paleontological data illuminate

  7. New Developmental Evidence Clarifies the Evolution of Wrist Bones in the Dinosaur–Bird Transition

    Science.gov (United States)

    Botelho, João Francisco; Ossa-Fuentes, Luis; Soto-Acuña, Sergio; Smith-Paredes, Daniel; Nuñez-León, Daniel; Salinas-Saavedra, Miguel; Ruiz-Flores, Macarena; Vargas, Alexander O.

    2014-01-01

    From early dinosaurs with as many as nine wrist bones, modern birds evolved to develop only four ossifications. Their identity is uncertain, with different labels used in palaeontology and developmental biology. We examined embryos of several species and studied chicken embryos in detail through a new technique allowing whole-mount immunofluorescence of the embryonic cartilaginous skeleton. Beyond previous controversy, we establish that the proximal–anterior ossification develops from a composite radiale+intermedium cartilage, consistent with fusion of radiale and intermedium observed in some theropod dinosaurs. Despite previous claims that the development of the distal–anterior ossification does not support the dinosaur–bird link, we found its embryonic precursor shows two distinct regions of both collagen type II and collagen type IX expression, resembling the composite semilunate bone of bird-like dinosaurs (distal carpal 1+distal carpal 2). The distal–posterior ossification develops from a cartilage referred to as “element x,” but its position corresponds to distal carpal 3. The proximal–posterior ossification is perhaps most controversial: It is labelled as the ulnare in palaeontology, but we confirm the embryonic ulnare is lost during development. Re-examination of the fossil evidence reveals the ulnare was actually absent in bird-like dinosaurs. We confirm the proximal–posterior bone is a pisiform in terms of embryonic position and its development as a sesamoid associated to a tendon. However, the pisiform is absent in bird-like dinosaurs, which are known from several articulated specimens. The combined data provide compelling evidence of a remarkable evolutionary reversal: A large, ossified pisiform re-evolved in the lineage leading to birds, after a period in which it was either absent, nonossified, or very small, consistently escaping fossil preservation. The bird wrist provides a modern example of how developmental and paleontological

  8. Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters.

    Science.gov (United States)

    Hervé, Vincent; Leroy, Boris; Da Silva Pires, Albert; Lopez, Pascal Jean

    2018-01-01

    In most cities, streets are designed for collecting and transporting dirt, litter, debris, storm water and other wastes as a municipal sanitation system. Microbial mats can develop on street surfaces and form microbial communities that have never been described. Here, we performed the first molecular inventory of the street gutter-associated eukaryotes across the entire French capital of Paris and the non-potable waters sources. We found that the 5782 OTUs (operational taxonomic units) present in the street gutters which are dominated by diatoms (photoautotrophs), fungi (heterotrophs), Alveolata and Rhizaria, includes parasites, consumers of phototrophs and epibionts that may regulate the dynamics of gutter mat microbial communities. Network analyses demonstrated that street microbiome present many species restricted to gutters, and an overlapping composition between the water sources used for street cleaning (for example, intra-urban aquatic networks and the associated rivers) and the gutters. We propose that street gutters, which can cover a significant surface area of cities worldwide, potentially have important ecological roles in the remediation of pollutants or downstream wastewater treatments, might also be a niche for growth and dissemination of putative parasite and pathogens.

  9. Characterization and function of the first antibiotic isolated from a vent organism: the extremophile metazoan Alvinella pompejana.

    Directory of Open Access Journals (Sweden)

    Aurélie Tasiemski

    Full Text Available The emblematic hydrothermal worm Alvinella pompejana is one of the most thermo tolerant animal known on Earth. It relies on a symbiotic association offering a unique opportunity to discover biochemical adaptations that allow animals to thrive in such a hostile habitat. Here, by studying the Pompeii worm, we report on the discovery of the first antibiotic peptide from a deep-sea organism, namely alvinellacin. After purification and peptide sequencing, both the gene and the peptide tertiary structures were elucidated. As epibionts are not cultivated so far and because of lethal decompression effects upon Alvinella sampling, we developed shipboard biological assays to demonstrate that in addition to act in the first line of defense against microbial invasion, alvinellacin shapes and controls the worm's epibiotic microflora. Our results provide insights into the nature of an abyssal antimicrobial peptide (AMP and into the manner in which an extremophile eukaryote uses it to interact with the particular microbial community of the hydrothermal vent ecosystem. Unlike earlier studies done on hydrothermal vents that all focused on the microbial side of the symbiosis, our work gives a view of this interaction from the host side.

  10. Physiological and immunological characterization of Caribbean spiny lobsters Panulirus argus naturally infected with Panulirus argus Virus 1 (PaV1).

    Science.gov (United States)

    Pascual Jiménez, Cristina; Huchin-Mian, Juan Pablo; Simões, Nuno; Briones-Fourzán, Patricia; Lozano-Álvarez, Enrique; Sánchez Arteaga, Ariadna; Pérez-Vega, Juan Antonio; Simá-Álvarez, Raúl; Rosas Vazquez, Carlos; Rodríguez-Canul, Rossanna

    2012-08-27

    The present study compares 13 physiological and immunological variables between a group of healthy Panulirus argus lobsters and a group of lobsters naturally infected with Panulirus argus Virus 1 (PaV1). Viral infection was determined through histopathology and PCR. Ten of the 13 variables differed significantly between the 2 groups. Using these variables, a principal component analysis yielded 2 separate clusters: one corresponding to the healthy group and the other corresponding to the infected group. In particular, infected lobsters exhibited significantly lower levels of osmotic pressure, total hemocyte counts, plasmatic proteins, and total phenoloxidase (PO) activity in plasma, as well as significantly higher levels of cholesterol and acylglycerides. These features are consistent with metabolic wasting, hyperlipidemia, and presumed immune suppression. Infection with PaV1 appears to increase the susceptibility of lobsters to some other opportunistic pathogens, as 61.1% of infected lobsters presented infestations of ciliate epibionts (Epystilis and Zoothamniun) in the gill chamber compared with 11.5% lobsters in the healthy group. Infected lobsters also showed significantly higher levels of total PO activity in degranulated hemocytes and trypsin inhibitor activity, potentially indicating activation of immune response by the PO system during the systemic infection with PaV1.

  11. Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages.

    Directory of Open Access Journals (Sweden)

    Shelly C Wu

    Full Text Available Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.. Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups-the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas than on northern turtles (where mean abundance/state was > 10%. L. cf. mutica was the most abundant species (40% on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts.

  12. Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages

    Science.gov (United States)

    Wu, Shelly C.; Bergey, Elizabeth A.

    2017-01-01

    Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina) across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.). Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups–the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas) than on northern turtles (where mean abundance/state was > 10%). L. cf. mutica was the most abundant species (40%) on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts. PMID:28192469

  13. Host-specific phenotypic plasticity of the turtle barnacle Chelonibia testudinaria: a widespread generalist rather than a specialist.

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    Chi Chiu Cheang

    Full Text Available Turtle barnacles are common epibionts on marine organisms. Chelonibia testudinaria is specific on marine turtles whereas C. patula is a host generalist, but rarely found on turtles. It has been questioned why C. patula, being abundant on a variety of live substrata, is almost absent from turtles. We evaluated the genetic (mitochondrial COI, 16S and 12S rRNA, and amplified fragment length polymorphism (AFLP and morphological differentiation of C. testudinaia and C. patula from different hosts, to determine the mode of adaptation exhibited by Chelonibia species on different hosts. The two taxa demonstrate clear differences in shell morphology and length of 4-6(th cirri, but very similar in arthropodal characters. Moreover, we detected no genetic differentiation in mitochondrial DNA and AFLP analyses. Outlier detection infers insignificant selection across loci investigated. Based on combined morphological and molecular evidence, we proposed that C. testudinaria and C. patula are conspecific, and the two morphs with contrasting shell morphologies and cirral length found on different host are predominantly shaped by developmental plasticity in response to environmental setting on different hosts. Chelonibia testudinaria is, thus, a successful general epibiotic fouler and the phenotypic responses postulated can increase the fitness of the animals when they attach on hosts with contrasting life-styles.

  14. Deep Sequencing of Myxilla (Ectyomyxilla) methanophila, an Epibiotic Sponge on Cold-Seep Tubeworms, Reveals Methylotrophic, Thiotrophic, and Putative Hydrocarbon-Degrading Microbial Associations

    KAUST Repository

    Arellano, Shawn M.

    2012-10-11

    The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge harbors methylotrophic bacteria due to its low δ13C value and high methanol dehydrogenase activity, yet the full community of microbial associations in M. methanophila remained uncharacterized. In this study, we sequenced 16S rRNA genes representing the microbial community in M. methanophila collected from two hydrocarbon-seep sites (GC234 and Bush Hill) using both Sanger sequencing and next-generation 454 pyrosequencing technologies. Additionally, we compared the microbial community in M. methanophila to that of the biofilm collected from the associated tubeworm. Our results revealed that the microbial diversity in the sponges from both sites was low but the community structure was largely similar, showing a high proportion of methylotrophic bacteria of the genus Methylohalomonas and polycyclic aromatic hydrocarbon (PAH)-degrading bacteria of the genera Cycloclasticus and Neptunomonas. Furthermore, the sponge microbial clone library revealed the dominance of thioautotrophic gammaproteobacterial symbionts in M. methanophila. In contrast, the biofilm communities on the tubeworms were more diverse and dominated by the chemoorganotrophic Moritella at GC234 and methylotrophic Methylomonas and Methylohalomonas at Bush Hill. Overall, our study provides evidence to support previous suggestion that M. methanophila harbors methylotrophic symbionts and also reveals the association of PAH-degrading and thioautotrophic microbes in the sponge. © 2012 Springer Science+Business Media New York.

  15. Biomass and Habitat Characteristics of Epiphytic Macroalgae in the Sibuti Mangroves, Sarawak, Malaysia.

    Science.gov (United States)

    Isa, Hasmidah Md; Kamal, Abu Hena Mustafa; Idris, Mohd Hanafi; Rosli, Zamri; Ismail, Johan

    2017-01-01

    Mangroves support diverse macroalgal assemblages as epibionts on their roots and tree trunks. These algae provide nutrients to the primary consumers in the aquatic food web and have been reported to be substantial contributors to marine ecosystems. The species diversity, biomass, and habitat characteristics of mangrove macroalgae were investigated at three stations in the Sibuti mangrove estuary, Sarawak, Malaysia, from November 2012 to October 2013. Three groups of macroalgae were recorded and were found to be growing on mangrove prop roots, namely Rhodophyta ( Caloglossa ogasawaraensis , Caloglossa adhaerens , Caloglossa stipitata , Bostrychia anomala, and Hypnea sp.), Chlorophyta ( Chaetomorpha minima and Chaetomorpha sp.), and Phaeophyta ( Dictyota sp.). The biomass of macroalgae was not influenced ( p >0.05) by the season in this mangrove forest habitat. The macroalgal species Hypnea sp. contributed the highest biomass at both Station 1 (210.56 mg/cm 2 ) and Station 2 (141.72 mg/cm 2 ), while the highest biomass was contributed by B. anomala (185.89 mg/cm 2 ) at Station 3. This study shows that the species distribution and assemblages of mangrove macroalgae were influenced by environmental parameters such as water nutrients, dissolved solids, and salinity in the estuarine mangrove habitats of Sibuti, Sarawak.

  16. Deep sequencing of Myxilla (Ectyomyxilla) methanophila, an epibiotic sponge on cold-seep tubeworms, reveals methylotrophic, thiotrophic, and putative hydrocarbon-degrading microbial associations.

    Science.gov (United States)

    Arellano, Shawn M; Lee, On On; Lafi, Feras F; Yang, Jiangke; Wang, Yong; Young, Craig M; Qian, Pei-Yuan

    2013-02-01

    The encrusting sponge Myxilla (Ectyomyxilla) methanophila (Poecilosclerida: Myxillidae) is an epibiont on vestimentiferan tubeworms at hydrocarbon seeps on the upper Louisiana slope of the Gulf of Mexico. It has long been suggested that this sponge harbors methylotrophic bacteria due to its low δ(13)C value and high methanol dehydrogenase activity, yet the full community of microbial associations in M. methanophila remained uncharacterized. In this study, we sequenced 16S rRNA genes representing the microbial community in M. methanophila collected from two hydrocarbon-seep sites (GC234 and Bush Hill) using both Sanger sequencing and next-generation 454 pyrosequencing technologies. Additionally, we compared the microbial community in M. methanophila to that of the biofilm collected from the associated tubeworm. Our results revealed that the microbial diversity in the sponges from both sites was low but the community structure was largely similar, showing a high proportion of methylotrophic bacteria of the genus Methylohalomonas and polycyclic aromatic hydrocarbon (PAH)-degrading bacteria of the genera Cycloclasticus and Neptunomonas. Furthermore, the sponge microbial clone library revealed the dominance of thioautotrophic gammaproteobacterial symbionts in M. methanophila. In contrast, the biofilm communities on the tubeworms were more diverse and dominated by the chemoorganotrophic Moritella at GC234 and methylotrophic Methylomonas and Methylohalomonas at Bush Hill. Overall, our study provides evidence to support previous suggestion that M. methanophila harbors methylotrophic symbionts and also reveals the association of PAH-degrading and thioautotrophic microbes in the sponge.

  17. Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy

    Directory of Open Access Journals (Sweden)

    Dattagupta Sharmishtha

    2010-06-01

    Full Text Available Abstract Background The sulfide-rich Frasassi caves in central Italy contain a rare example of a freshwater ecosystem supported entirely by chemoautotrophy. Niphargus ictus, the sole amphipod species previously reported from this locality, was recently shown to host the first known case of a freshwater chemoautotrophic symbiosis. Since the habitat of N. ictus is highly fragmented and is comprised of streams and lakes with various sulfide concentrations, we conducted a detailed study to examine the potential genetic diversity of this species within Frasassi. Results By sequencing one nuclear (ITS and two mitochondrial (COI and 12S regions, we show that four partially sympatric Niphargus clades are present in Frasassi. Morphological and behavioral data obtained for three of these clades are perfectly congruent with this molecular delineation and make it possible to distinguish them in the field. Phylogenetic analyses of 28S ribosomal DNA sequences reveal that, among the four clades, only two are closely related to each other. Moreover, these four clades occupy distinct niches that seem to be related to the chemical properties and flow regimes of the various water bodies within Frasassi. Conclusions Our results suggest that four distinct Niphargus species are present in Frasassi and that they originated from three or four independent invasions of the cave system. At least two among the four species harbor Thiothrix epibionts, which paves the way for further studies of the specificity and evolutionary history of this symbiosis.

  18. Islands in a Sea of Mud: Insights From Terrestrial Island Theory for Community Assembly on Insular Marine Substrata.

    Science.gov (United States)

    Meyer, K S

    Most marine hard-bottom habitats are isolated, separated from other similar habitats by sand or mud flats, and can be considered analogous to terrestrial islands. The extensive scientific literature on terrestrial islands provides a theoretical framework for the analysis of isolated marine habitats. More individuals and higher species richness occur on larger marine substrata, a pattern that resembles terrestrial islands. However, while larger terrestrial islands have greater habitat diversity and productivity, the higher species richness on larger marine hard substrata can be explained by simple surface area and hydrodynamic phenomena: larger substrata extend further into the benthic boundary, exposing fauna to faster current and higher food supply. Marine island-like communities are also influenced by their distance to similar habitats, but investigations into the reproductive biology and dispersal ability of individual species are required for a more complete understanding of population connectivity. On terrestrial islands, nonrandom co-occurrence patterns have been attributed to interspecific competition, but while nonrandom co-occurrence patterns have been found for marine fauna, different mechanisms are responsible, including epibiontism. Major knowledge gaps for community assembly in isolated marine habitats include the degree of connectivity between isolated habitats, mechanisms of succession, and the extent of competition on hard substrata, particularly in the deep sea. Anthropogenic hard substrata of known age can be used opportunistically as "natural" laboratories to begin answering these questions. © 2017 Elsevier Ltd. All rights reserved.

  19. Survey of protozoan, helminth and viral infections in shrimp Litopenaeus setiferus and prawn Macrobrachium acanthurus native to the Jamapa River region, Mexico.

    Science.gov (United States)

    Domínguez-Machín, Magda E; Hernández-Vergara, Martha P; Jiménez-García, Isabel; Simá-Alvarez, Raúl; Rodríguez-Canul, Rossanna

    2011-09-09

    We surveyed protozoan and metazoan parasites as well as white spot syndrome virus (WSSV) and infectious hypodermal hematopoietic necrosis virus (IHHNV) in white shrimp Litopenaeus setiferus and the palaemonid prawn Macrobrachium acanthurus native to the lower Jamapa River region of Veracruz, Mexico. The presence of parasites and the infection parameters were evaluated in 113 palaemonid prawns collected during the northwind (n = 45), rainy (n = 38) and dry seasons (n = 30) between October 2007 and July 2008, and in 91 shrimp collected in the rainy season between May and June 2008. In L. setiferus, ciliates of the subclass Apostomatia (Ascophrys sp.) were evident in gills, and third-stage larvae of the nematode Physocephalus sexalatus were evident in the stomach. Cestodes of the genus Prochristianella were evident in the hepatopancreas, while some gregarines of the genus Nematopsis, as well as unidentified larval cestodes, were observed in the intestine. Histology identified Ascophrys sp. in association with gill necrosis and tissue melanization. Slight inflammation was observed in intestinal epithelium near cestode larvae. In M. acanthurus, epibionts of the protozoans Epistylis sp., Acineta sp. and Lagenophrys sp. were observed under uropods, periopods and pleopods. An unidentified ciliate of the Apostomatia was also found in the gills, and Nematopsis was identified in the intestine. No histopathology was observed in association with these parasites. Moreover, neither WSSV nor IHHNV were detected by the polymerase chain reaction (PCR) in any of the L. setiferus or M. acanthurus analysed.

  20. Population study of the Hawksbill Turtle eretmochelys imbricata (Cheloniidae) in the southern pacific region of Colombia

    International Nuclear Information System (INIS)

    Tobon Lopez, Alexander; Amorocho Llanos, Diego Fernando

    2014-01-01

    The objective of this research was to determine biological and ecological population characteristics of the hawksbill turtle (Eretmochelys imbricata) found in the southern Colombian Pacific Department of Cauca. Morphometric measurements were recorded, the health status of individuals was reviewed, and blood samples were taken for a biochemistry assessment. During the seven months of the investigation, 25 hawksbill turtles were caught (16 different individuals) on the reefs of Gorgona Natural National Park. Forty-six percent of the total numbers of turtles assessed were recaptured during the study period. While no obvious health problems were noted, most animals possessed epibionts and filamentous algae covering the carapace, some parts of the limbs, as well as on their neck. Curved carapace length (CCL) showed the highest proportion of individuals were between 37 and 45 cm. Sixteen individuals captured in Gorgona Natural National Park were compared with 11 individuals captured in the coastal zone of the Department of Cauca. Using the Mann-Whitney U test, a significant difference in CCL was found between these two groups; the animals from Gorgona National Park were larger than those present on the coast of the mainland (Z = -2.59, p = 0.007). Uric acid concentrations were found to be higher than previously referenced values.

  1. Population study of the Hawksbill Turtle eretmochelys imbricata (Cheloniidae) in the southern pacific region of Colombia; Estudio poblacional de la Tortuga Carey Eretmochelys imbricata (Cheloniidae) en el pacifico sur de Colombia

    Energy Technology Data Exchange (ETDEWEB)

    Tobon Lopez, Alexander; Amorocho Llanos, Diego Fernando

    2014-07-01

    The objective of this research was to determine biological and ecological population characteristics of the hawksbill turtle (Eretmochelys imbricata) found in the southern Colombian Pacific Department of Cauca. Morphometric measurements were recorded, the health status of individuals was reviewed, and blood samples were taken for a biochemistry assessment. During the seven months of the investigation, 25 hawksbill turtles were caught (16 different individuals) on the reefs of Gorgona Natural National Park. Forty-six percent of the total numbers of turtles assessed were recaptured during the study period. While no obvious health problems were noted, most animals possessed epibionts and filamentous algae covering the carapace, some parts of the limbs, as well as on their neck. Curved carapace length (CCL) showed the highest proportion of individuals were between 37 and 45 cm. Sixteen individuals captured in Gorgona Natural National Park were compared with 11 individuals captured in the coastal zone of the Department of Cauca. Using the Mann-Whitney U test, a significant difference in CCL was found between these two groups; the animals from Gorgona National Park were larger than those present on the coast of the mainland (Z = -2.59, p = 0.007). Uric acid concentrations were found to be higher than previously referenced values.

  2. Biodiversity patterns of epifaunal assemblages associated with the gorgonians Eunicella gazella and Leptogorgia lusitanica in response to host, space and time

    KAUST Repository

    Carvalho, Susana

    2014-01-01

    Patterns of biodiversity (alpha- and beta-diversity), abundance and community structure of the epifaunal assemblages associated with two gorgonians, Eunicella gazella and Leptogorgia lusitanica, were analysed in relation to host, colony size, location and time. Colony size and time were the major factors shaping attendant assemblages. Patterns of alpha-diversity and beta-diversity were host-dependent. Assemblages associated with E. gazella showed a significant inter-annual variability for most of the metrics analysed, while in those associated with L. lusitanica only Shannon-Wiener varied significantly between years. In L lusitanica Hurlbert\\'s expected number of taxa was significantly lower in small-sized than in medium- to large-sized colonies, but an opposite pattern was detected for beta-diversity, reflecting the higher heterogeneity among small-sized colonies. The dbRDA analysis segregated the assemblages associated with each of the two hosts; the faunal patterns were mainly explained by colony size related attributes (area, number of branches and, to a lesser extent, width) and the "colonial" epibiont cover. However, we suggest that altogether they may act as a metacommunity, with high temporal and spatial fluidity in their composition and structure related to multiple factors including not only a component of stochasticity but also life history events, biotic interactions and response to habitat heterogeneity and environmental variability. (C) 2013 Elsevier B.V. All rights reserved.

  3. Biodiversity patterns of epifaunal assemblages associated with the gorgonians Eunicella gazella and Leptogorgia lusitanica in response to host, space and time

    KAUST Repository

    Carvalho, Susana; Cú rdia, Joã o; Pereira, Fá bio; Guerra-Garcí a, José Manuel; Santos, Miguel N.; Cunha, Marina R.

    2014-01-01

    Patterns of biodiversity (alpha- and beta-diversity), abundance and community structure of the epifaunal assemblages associated with two gorgonians, Eunicella gazella and Leptogorgia lusitanica, were analysed in relation to host, colony size, location and time. Colony size and time were the major factors shaping attendant assemblages. Patterns of alpha-diversity and beta-diversity were host-dependent. Assemblages associated with E. gazella showed a significant inter-annual variability for most of the metrics analysed, while in those associated with L. lusitanica only Shannon-Wiener varied significantly between years. In L lusitanica Hurlbert's expected number of taxa was significantly lower in small-sized than in medium- to large-sized colonies, but an opposite pattern was detected for beta-diversity, reflecting the higher heterogeneity among small-sized colonies. The dbRDA analysis segregated the assemblages associated with each of the two hosts; the faunal patterns were mainly explained by colony size related attributes (area, number of branches and, to a lesser extent, width) and the "colonial" epibiont cover. However, we suggest that altogether they may act as a metacommunity, with high temporal and spatial fluidity in their composition and structure related to multiple factors including not only a component of stochasticity but also life history events, biotic interactions and response to habitat heterogeneity and environmental variability. (C) 2013 Elsevier B.V. All rights reserved.

  4. Bioerosion and encrustation: Evidences from the Middle ‒ Upper Jurassic of central Saudi Arabia

    Science.gov (United States)

    El-Hedeny, Magdy; El-Sabbagh, Ahmed; Al Farraj, Saleh

    2017-10-01

    The Middle ‒ Upper Jurassic hard substrates of central Saudi Arabia displayed considerable signs of bioerosion and encrustations. They include organic (oysters, other bivalves, gastropods, corals and brachiopods) and an inorganic carbonate hardground that marks the boundary between the Middle Jurassic Tuwaiq Mountain Limestone and the Upper Jurassic Hanifa Formation. Traces of bioerosion in organic substrates include seven ichnotaxa produced by bivalves (Gastrochaenolites Leymerie, 1842), polychaete annelids (Trypanites Mägdefrau, 1932; MaeandropolydoraVoigt, 1965 and CaulostrepsisClarke, 1908), sponges (Entobia Bronn, 1837), acrothoracican cirripedes (Rogerella Saint-Seine, 1951), gastropods (Oichnus Bromley, 1981) and probable ?Centrichnus cf. eccentricus. The encrusting epifauna on these substrates consist of several organisms, including oysters, serpulid worms, corals and foraminifera. In contrast, the carbonate hardground was only bioeroded by Gastrochaenolite, Trypanites and Entobia. Epibionts on this hardground include ;Liostrea Douvillé, 1904-type; oysters, Nanogyra nana Sowerby, 1822 and serpulids. In general, bioerosion and encrustation are less diversified in hardground than in organic substrates, indicating a long time of exposition of organic substrates with slow to moderate rate of deposition in a restricted marine environment. Both organic and inorganic commuinities are correlated with those of other equatorial, subtropical and temperate equivalents.

  5. Parasitic gastropod bioerosion trace fossil on Cenomanian oysters from Le Mans, France and its ichnologic and taphonomic context

    Directory of Open Access Journals (Sweden)

    Gérard Breton

    2017-03-01

    Full Text Available We describe and name Loxolenichnus stellatocinctus Breton and Wisshak igen. et isp. nov., a bioerosion trace fossil on an Upper Cenomanian oyster from Le Mans (France. This trace is attributed here to a parasitic gastropod. The characteristics of this ichnospecies are a combination of one or several, vertical or oblique, complete penetrations, and an asymmetrical attachment etching (fixichnion with a diagnostic set of stellate grooves increasingly distinct towards the margin of the trace. By including two former Oichnus ichnospecies, Loxolenichnus halo comb. nov. and Loxolenichnus taddei comb. nov., Oichnus, is now constrained to pure predation traces (praedichnia. The numerous oysters collected from the Marnes à Pycnodonte biauriculata Formation show associated epibionts and encrusters as well as borers and scrapers. Encrusters comprise 24 taxa while bioerosion trace fossils comprise 17 ichnotaxa ranging from very rare (< 0.1% to quite abundant (81%. The taphonomic history leading to an ex-situ condensation of these oysters is complex. Both the Gnathichnus and Entobia ichnofacies are represented on the shellgrounds, presumably alternatingly.

  6. Metabolomic profiling reveals deep chemical divergence between two morphotypes of the zoanthid Parazoanthus axinellae

    Science.gov (United States)

    Cachet, Nadja; Genta-Jouve, Grégory; Ivanisevic, Julijana; Chevaldonné, Pierre; Sinniger, Frédéric; Culioli, Gérald; Pérez, Thierry; Thomas, Olivier P.

    2015-01-01

    Metabolomics has recently proven its usefulness as complementary tool to traditional morphological and genetic analyses for the classification of marine invertebrates. Among the metabolite-rich cnidarian order Zoantharia, Parazoanthus is a polyphyletic genus whose systematics and phylogeny remain controversial. Within this genus, one of the most studied species, Parazoanthus axinellae is prominent in rocky shallow waters of the Mediterranean Sea and the NE Atlantic Ocean. Although different morphotypes can easily be distinguished, only one species is recognized to date. Here, a metabolomic profiling approach has been used to assess the chemical diversity of two main Mediterranean morphotypes, the “slender” and “stocky” forms of P. axinellae. Targeted profiling of their major secondary metabolites revealed a significant chemical divergence between the morphotypes. While zoanthoxanthin alkaloids and ecdysteroids are abundant in both morphs, the “slender” morphotype is characterized by the presence of additional and bioactive 3,5-disubstituted hydantoin derivatives named parazoanthines. The absence of these specific compounds in the “stocky” morphotype was confirmed by spatial and temporal monitoring over an annual cycle. Moreover, specimens of the “slender” morphotype are also the only ones found as epibionts of several sponge species, particularly Cymbaxinella damicornis thus suggesting a putative ecological link. PMID:25655432

  7. The vascular flora of the Tepoš plateau around Pirot city (Eastern Serbia

    Directory of Open Access Journals (Sweden)

    Jotić, B.

    2013-12-01

    Full Text Available The flora of the karst plateau Tepoš, which is the part of Vidlič mountain (eastern Serbia was studied. Based on the analysis of the collected material and data from the literature, it was noted that the flora of Tepoš plateau is represented by 486 species, distributed in 284 genera and 68 families of vascular plants. The biological spectra was shown. The hemicriptophytic-terophytic character was established by analyzing the presence of plant life forms. By phytogeographical analysis the presence of 25 area types was established. The euroasian florystic chorion with 258 species of eurasian area type is the most abundant, followed by mediterranean-submediterranean (58 species, central-european (47 species, cosmopolitan (27 species and pontian area type (24 species. In the flora of Tepoš plateau the 9 balkan endemic taxa were recorded, which is 3,14% of total balkan endemic taxa in flora of Serbia. A small number of endemic taxa is expected, considering the low diversity of habitats. Balkan endemic taxa recorded in this area are: Acer hyrcanum subsp. intermedium, Bupleurum flavicans, Crucianella graeca, Eryngium palmatum, Pastinaca hirsuta, Hypericum rumeliacum subsp. rumeliacum, Thymus praecox subsp. jankae, Linaria rubioides subsp. nissana and Viola tricolor subsp. macedonica.

  8. Infección urinaria crónica en un hospital general

    Directory of Open Access Journals (Sweden)

    Hernando Rocha Posada

    1972-10-01

    Full Text Available Un grupo seleccionado de 362 pacientes adultos entre varones y mujeres, fueron sometidos a medicación quimioantibiótica para  evaluar    el curso de la bacteriuria crónica. Los mejores resultados se obtuvieron luego del uso de la Gentamicina (79.1% Rifampicina (74,4%, Hetacilina (63, 3%, Kanamicina (60,0%, Oxietraciclina micronizada (60.0% y Cefalatina (52,2%. Con sulfametoxipiridazina, Colimicina, Doxiciclina, Ampicilina, Metaciclina y Cloramfenicol los resultados variaron entre el 40 y 50%. Durante el lapso comprendido entre 1961 y 1967, fueron estudiados 6.113 urocultivos obteniéndose recuentos significativos por encima de100.000 o más bacterias, en el 31,03%. Las bacterias más frecuentemente aisladas fueron en su orden: Escherichia coli, Klebsiella Aerobacter, Proteus, Escherichia freundii, Paracoli, E. intermedium y P. aeruginosa. Las infecciones por cocos gram-positivos fueron escasas, predominando en ellas el Enterococo y el Estafilococo coagulasa positiva.

  9. Culturable heavy metal-resistant and plant growth promoting bacteria in V-Ti magnetite mine tailing soil from Panzhihua, China.

    Directory of Open Access Journals (Sweden)

    Xiumei Yu

    Full Text Available To provide a basis for using indigenous bacteria for bioremediation of heavy metal contaminated soil, the heavy metal resistance and plant growth-promoting activity of 136 isolates from V-Ti magnetite mine tailing soil were systematically analyzed. Among the 13 identified bacterial genera, the most abundant genus was Bacillus (79 isolates out of which 32 represented B. subtilis and 14 B. pumilus, followed by Rhizobium sp. (29 isolates and Ochrobactrum intermedium (13 isolates. Altogether 93 isolates tolerated the highest concentration (1000 mg kg(-1 of at least one of the six tested heavy metals. Five strains were tolerant against all the tested heavy metals, 71 strains tolerated 1,000 mg kg(-1 cadmium whereas only one strain tolerated 1,000 mg kg(-1 cobalt. Altogether 67% of the bacteria produced indoleacetic acid (IAA, a plant growth-promoting phytohormone. The concentration of IAA produced by 53 isolates was higher than 20 µg ml(-1. In total 21% of the bacteria produced siderophore (5.50-167.67 µg ml(-1 with two Bacillus sp. producing more than 100 µg ml(-1. Eighteen isolates produced both IAA and siderophore. The results suggested that the indigenous bacteria in the soil have beneficial characteristics for remediating the contaminated mine tailing soil.

  10. Surface modification of silicon wafer by grafting zwitterionic polymers to improve its antifouling property

    Science.gov (United States)

    Sun, Yunlong; Chen, Changlin; Xu, Heng; Lei, Kun; Xu, Guanzhe; Zhao, Li; Lang, Meidong

    2017-10-01

    Silicon (111) wafer was modified by triethoxyvinylsilane containing double bond as an intermedium, and then P4VP (polymer 4-vinyl pyridine) brush was "grafted" onto the surface of silicon wafer containing reactive double bonds by adopting the "grafting from" way and Si-P4VP substrate (silicon wafer grafted by P4VP) was obtained. Finally, P4VP brush of Si-P4VP substrate was modified by 1,3-propanesulfonate fully to obtain P4VP-psl brush (zwitterionic polypyridinium salt) and the functional Si-P4VP-psl substrate (silicon wafer grafted by zwitterionic polypyridinium salt based on polymer 4-vinyl pyridine) was obtained successfully. The antifouling property of the silicon wafer, the Si-P4VP substrate and the Si-P4VP-psl substrate was investigated by using bovine serum albumin, mononuclear macrophages (RAW 264.7) and Escherichia coli (E. coli) ATTC25922 as model bacterium. The results showed that compared with the blank sample-silicon wafer, the Si-P4VP-psl substrate had excellent anti-adhesion ability against bovine serum albumin, cells and bacterium, due to zwitterionic P4VP-psl brush (polymer 4-vinyl pyridine salt) having special functionality like antifouling ability on biomaterial field.

  11. Bioremediation assessment of diesel-biodiesel-contaminated soil using an alternative bioaugmentation strategy.

    Science.gov (United States)

    Colla, Tatiana Simonetto; Andreazza, Robson; Bücker, Francielle; de Souza, Marcela Moreira; Tramontini, Letícia; Prado, Gerônimo Rodrigues; Frazzon, Ana Paula Guedes; Camargo, Flávio Anastácio de Oliveira; Bento, Fátima Menezes

    2014-02-01

    This study investigated the effectiveness of successive bioaugmentation, conventional bioaugmentation, and biostimulation of biodegradation of B10 in soil. In addition, the structure of the soil microbial community was assessed by polymerase chain reaction-denaturing gradient gel electrophoresis. The consortium was inoculated on the initial and the 11th day of incubation for successive bioaugmentation and only on the initial day for bioaugmentation and conventional bioaugmentation. The experiment was conducted for 32 days. The microbial consortium was identified based on sequencing of 16S rRNA gene and consisted as Pseudomonas aeruginosa, Achromobacter xylosoxidans, and Ochrobactrum intermedium. Nutrient introduction (biostimulation) promoted a positive effect on microbial populations. The results indicate that the edaphic community structure and dynamics were different according to the treatments employed. CO2 evolution demonstrated no significant difference in soil microbial activity between biostimulation and bioaugmentation treatments. The total petroleum hydrocarbon (TPH) analysis indicated a biodegradation level of 35.7 and 32.2 % for the biostimulation and successive bioaugmentation treatments, respectively. Successive bioaugmentation displayed positive effects on biodegradation, with a substantial reduction in TPH levels.

  12. Application of a continuously stirred tank bioreactor (CSTR) for bioremediation of hydrocarbon-rich industrial wastewater effluents

    International Nuclear Information System (INIS)

    Gargouri, Boutheina; Karray, Fatma; Mhiri, Najla; Aloui, Fathi; Sayadi, Sami

    2011-01-01

    A continuously stirred tank bioreactor (CSTR) was used to optimize feasible and reliable bioprocess system in order to treat hydrocarbon-rich industrial wastewaters. A successful bioremediation was developed by an efficient acclimatized microbial consortium. After an experimental period of 225 days, the process was shown to be highly efficient in decontaminating the wastewater. The performance of the bioaugmented reactor was demonstrated by the reduction of COD rates up to 95%. The residual total petroleum hydrocarbon (TPH) decreased from 320 mg TPH l -1 to 8 mg TPH l -1 . Analysis using gas chromatography-mass spectrometry (GC-MS) identified 26 hydrocarbons. The use of the mixed cultures demonstrated high degradation performance for hydrocarbons range n-alkanes (C10-C35). Six microbial isolates from the CSTR were characterized and species identification was confirmed by sequencing the 16S rRNA genes. The partial 16S rRNA gene sequences demonstrated that 5 strains were closely related to Aeromonas punctata (Aeromonas caviae), Bacillus cereus, Ochrobactrum intermedium, Stenotrophomonas maltophilia and Rhodococcus sp. The 6th isolate was affiliated to genera Achromobacter. Besides, the treated wastewater could be considered as non toxic according to the phytotoxicity test since the germination index of Lepidium sativum ranged between 57 and 95%. The treatment provided satisfactory results and presents a feasible technology for the treatment of hydrocarbon-rich wastewater from petrochemical industries and petroleum refineries.

  13. Application of a continuously stirred tank bioreactor (CSTR) for bioremediation of hydrocarbon-rich industrial wastewater effluents.

    Science.gov (United States)

    Gargouri, Boutheina; Karray, Fatma; Mhiri, Najla; Aloui, Fathi; Sayadi, Sami

    2011-05-15

    A continuously stirred tank bioreactor (CSTR) was used to optimize feasible and reliable bioprocess system in order to treat hydrocarbon-rich industrial wastewaters. A successful bioremediation was developed by an efficient acclimatized microbial consortium. After an experimental period of 225 days, the process was shown to be highly efficient in decontaminating the wastewater. The performance of the bioaugmented reactor was demonstrated by the reduction of COD rates up to 95%. The residual total petroleum hydrocarbon (TPH) decreased from 320 mg TPH l(-1) to 8 mg TPH l(-1). Analysis using gas chromatography-mass spectrometry (GC-MS) identified 26 hydrocarbons. The use of the mixed cultures demonstrated high degradation performance for hydrocarbons range n-alkanes (C10-C35). Six microbial isolates from the CSTR were characterized and species identification was confirmed by sequencing the 16S rRNA genes. The partial 16S rRNA gene sequences demonstrated that 5 strains were closely related to Aeromonas punctata (Aeromonas caviae), Bacillus cereus, Ochrobactrum intermedium, Stenotrophomonas maltophilia and Rhodococcus sp. The 6th isolate was affiliated to genera Achromobacter. Besides, the treated wastewater could be considered as non toxic according to the phytotoxicity test since the germination index of Lepidium sativum ranged between 57 and 95%. The treatment provided satisfactory results and presents a feasible technology for the treatment of hydrocarbon-rich wastewater from petrochemical industries and petroleum refineries. Copyright © 2011 Elsevier B.V. All rights reserved.

  14. Application of a continuously stirred tank bioreactor (CSTR) for bioremediation of hydrocarbon-rich industrial wastewater effluents

    Energy Technology Data Exchange (ETDEWEB)

    Gargouri, Boutheina; Karray, Fatma; Mhiri, Najla; Aloui, Fathi [Laboratoire des Bioprocedes Environnementaux, Pole d' Excellence Regional AUF-LBPE, Centre de Biotechnologie de Sfax, Universite de Sfax, BP 1117, 3018 Sfax (Tunisia); Sayadi, Sami, E-mail: sami.sayadi@cbs.rnrt.tn [Laboratoire des Bioprocedes Environnementaux, Pole d' Excellence Regional AUF-LBPE, Centre de Biotechnologie de Sfax, Universite de Sfax, BP 1117, 3018 Sfax (Tunisia)

    2011-05-15

    A continuously stirred tank bioreactor (CSTR) was used to optimize feasible and reliable bioprocess system in order to treat hydrocarbon-rich industrial wastewaters. A successful bioremediation was developed by an efficient acclimatized microbial consortium. After an experimental period of 225 days, the process was shown to be highly efficient in decontaminating the wastewater. The performance of the bioaugmented reactor was demonstrated by the reduction of COD rates up to 95%. The residual total petroleum hydrocarbon (TPH) decreased from 320 mg TPH l{sup -1} to 8 mg TPH l{sup -1}. Analysis using gas chromatography-mass spectrometry (GC-MS) identified 26 hydrocarbons. The use of the mixed cultures demonstrated high degradation performance for hydrocarbons range n-alkanes (C10-C35). Six microbial isolates from the CSTR were characterized and species identification was confirmed by sequencing the 16S rRNA genes. The partial 16S rRNA gene sequences demonstrated that 5 strains were closely related to Aeromonas punctata (Aeromonas caviae), Bacillus cereus, Ochrobactrum intermedium, Stenotrophomonas maltophilia and Rhodococcus sp. The 6th isolate was affiliated to genera Achromobacter. Besides, the treated wastewater could be considered as non toxic according to the phytotoxicity test since the germination index of Lepidium sativum ranged between 57 and 95%. The treatment provided satisfactory results and presents a feasible technology for the treatment of hydrocarbon-rich wastewater from petrochemical industries and petroleum refineries.

  15. Neuro-economics in chicks: foraging choices based on amount, delay and cost.

    Science.gov (United States)

    Matsushima, Toshiya; Kawamori, Ai; Bem-Sojka, Tiaza

    2008-06-15

    Studies on the foraging choices are reviewed, with an emphasis on the neural representations of elementary factors of food (i.e., amount, delay and consumption time) in the avian brain. Domestic chicks serve as an ideal animal model in this respect, as they quickly associate cue colors with subsequently supplied food rewards, and their choices are quantitatively linked with the rewards. When a pair of such color cues was simultaneously presented, the trained chicks reliably made choices according to the profitability of food associated with each color. Two forebrain regions are involved in distinct aspects of choices; i.e., nucleus accumbens-medial striatum (Ac-MSt) and arcopallium intermedium (AI), an association area in the lateral forebrain. Localized lesions of Ac-MSt enhanced delay aversion, and the ablated chicks made impulsive choices of immediate reward more frequently than sham controls. On the other hand, lesions of AI enhanced consumption-time aversion, and the ablated chicks shifted their choices toward easily consumable reward with their impulsiveness unchanged; delay and consumption time are thus doubly dissociated. Furthermore, chicks showed distinct patterns of risk-sensitive choices depending on the factor that varied at trials. Risk aversion occurred when food amount varied, whereas consistent risk sensitivity was not found when the delay varied; amount and delay were not interchangeable. Choices are thus deviated from those predicted as optima. Instead, factors such as amount, delay and consumption time could be separately represented and processed to yield economically sub-optimal choices.

  16. Molecular and Cytological Comparisons of Chromosomes 7el₁, 7el₂, 7E(e), and 7E ⁱ Derived from Thinopyrum.

    Science.gov (United States)

    Guo, Jun; He, Fang; Cai, Jin-Jin; Wang, Hong-Wei; Li, An-Fei; Wang, Hong-Gang; Kong, Ling-Rang

    2015-01-01

    Thinopyrum chromosomes 7el1, 7el2, 7E(e), and 7E(i), homoeologous to group 7 chromosomes of common wheat (Triticum aestivum), were determined to have many useful agronomical traits for wheat improvement. To analyze the genetic relationships among the 4 Thinopyrum 7E chromosomes, the conserved orthologous set markers, genomic in situ hybridization (GISH), and meiotic chromosome pairing were used in this study. The unweighted pair-group method with arithmetical averages (UPGMA) analysis indicated that 7el1, derived from T. ponticum, and 7E(i), derived from T. intermedium, were the most closely related. 7el2, derived from T. ponticum, was relatively distant from the 7el1-7E(i) complex. While 7E(e), derived from T. elongatum, was more distantly related to 7el1, 7el2, and 7E(i). This is the first report showing that 7el1 and 7E(i) may be similar, which could be explained by the similar chromosome signal distribution revealed by GISH as well as UPGMA analysis revealed by both molecular markers and the highest frequency of meiotic pairing. The newly developed genome-specific molecular markers may be useful for marker-assisted selection of Lr19, Bdv3, and Fhblop. © 2015 S. Karger AG, Basel.

  17. Expression of Podoplanin in the Mouse Tooth Germ and Apical Bud Cells

    Science.gov (United States)

    Sawa, Yoshihiko; Iwasawa, Kana; Ishikawa, Hiroyuki

    2008-01-01

    This study was designed to investigate the distribution of cells expressing podoplanin in the mouse tooth bud. Podoplanin expression was detected in enamel epithelia of the cervical loop at cell-cell contacts strongly, and weakly on the loosely aggregated stellate reticulum in the center and the neighboring stratum intermedium. Odontoblasts exhibited intense podoplanin expression at the junction with predentin while no expression was detected in the enamel organ containing ameloblasts. These results suggest that proliferating inner and outer enamel epithelia express podoplanin but that the expression is suppressed in the differentiated epithelia containing ameloblasts. On the other hand the podoplanin expression occurs in the differentiating odontoblasts and the expression is sustained in differentiated odontoblasts, indicating that odontoblasts have the strong ability to express podoplanin. In cultured apical bud cells podoplanin was detected at cell-cell contacts. In real-time PCR analysis the amount of podoplanin mRNA of the apical buds was 2-fold compared with the amount of kidney used as a positive control. These findings indicate that apical bud cells have the strong ability to express the podoplanin gene. Podoplanin is a mucin-type glycoprotein negatively charged by extensive O-glycosylation and a high content of sialic acid, which expresses the adhesive property. The podoplanin may contribute to form odontoblastic fiber or function as the anchorage to the tooth development and in proliferating epithelial cells of cervical loop and apical bud. PMID:18989465

  18. Detection of alien chromatin introgression from Thinopyrum into wheat using S genomic DNA as a probe--a landmark approach for Thinopyrum genome research.

    Science.gov (United States)

    Chen, Q

    2005-01-01

    The introduction of alien genetic variation from the genus Thinopyrum through chromosome engineering into wheat is a valuable and proven technique for wheat improvement. A number of economically important traits have been transferred into wheat as single genes, chromosome arms or entire chromosomes. Successful transfers can be greatly assisted by the precise identification of alien chromatin in the recipient progenies. Chromosome identification and characterization are useful for genetic manipulation and transfer in wheat breeding following chromosome engineering. Genomic in situ hybridization (GISH) using an S genomic DNA probe from the diploid species Pseudoroegneria has proven to be a powerful diagnostic cytogenetic tool for monitoring the transfer of many promising agronomic traits from Thinopyrum. This specific S genomic probe not only allows the direct determination of the chromosome composition in wheat-Thinopyrum hybrids, but also can separate the Th. intermedium chromosomes into the J, J(S) and S genomes. The J(S) genome, which consists of a modified J genome chromosome distinguished by S genomic sequences of Pseudoroegneria near the centromere and telomere, carries many disease and mite resistance genes. Utilization of this S genomic probe leads to a better understanding of genomic affinities between Thinopyrum and wheat, and provides a molecular cytogenetic marker for monitoring the transfer of alien Thinopyrum agronomic traits into wheat recipient lines. Copyright 2005 S. Karger AG, Basel.

  19. Mediator 1 contributes to enamel mineralization as a coactivator for Notch1 signaling and stimulates transcription of the alkaline phosphatase gene.

    Science.gov (United States)

    Yoshizaki, Keigo; Hu, Lizhi; Nguyen, Thai; Sakai, Kiyoshi; Ishikawa, Masaki; Takahashi, Ichiro; Fukumoto, Satoshi; DenBesten, Pamela K; Bikle, Daniel D; Oda, Yuko; Yamada, Yoshihiko

    2017-08-18

    Tooth enamel is mineralized through the differentiation of multiple dental epithelia including ameloblasts and the stratum intermedium (SI), and this differentiation is controlled by several signaling pathways. Previously, we demonstrated that the transcriptional coactivator Mediator 1 (MED1) plays a critical role in enamel formation. For instance, conditional ablation of Med1 in dental epithelia causes functional changes in incisor-specific dental epithelial stem cells, resulting in mineralization defects in the adult incisors. However, the molecular mechanism by which Med1 deficiency causes these abnormalities is not clear. Here, we demonstrated that Med1 ablation causes early SI differentiation defects resulting in enamel hypoplasia of the Med1 -deficient molars. Med1 deletion prevented Notch1-mediated differentiation of the SI cells resulting in decreased alkaline phosphatase (ALPL), which is essential for mineralization. However, it does not affect the ability of ameloblasts to produce enamel matrix proteins. Using the dental epithelial SF2 cell line, we demonstrated that MED1 directly activates transcription of the Alpl gene through the stimulation of Notch1 signaling by forming a complex with cleaved Notch1-RBP-Jk on the Alpl promoter. These results suggest that MED1 may be essential for enamel matrix mineralization by serving as a coactivator for Notch1 signaling regulating transcription of the Alpl gene.

  20. Investigational research on the design of computational materials; Keisanki zairyo sekkei no chosa kenkyu

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-03-01

    Computer chemistry was investigationally studied. The advance of theoretical chemistry is indispensable to the design of materials, and the theory and high speed computational method are expected which can simulate the real system with more accuracy. It is basic to simulate structures and physical properties of structural molecules and the aggregate, but the meso region, the intermedium region between structural molecules and the aggregate, has became regarded as important. Rough visualization models in high polymer materials and the progress of computational software/hardware of quantum chemistry/molecular dynamics such as catalyst become necessary. Seamless zooming is proposed as a concept of the software which simulates materials from micro/macro/meso viewpoints. Moreover, to make the most of computer chemistry, an integrated system is necessary which generally handles computational software, database, etc. For the development of software, indispensable is the demonstrative verification by a combination of experiments and researchers. Under a commission from NEDO, the investigational research was conducted as a leading study during fiscal 1996 and 1997 to view the course of the research. 17 refs., 37 figs., 5 tabs.

  1. A study on the improvement on the surface characteristics of STS403 stainless steel by chromizing and boronizing

    International Nuclear Information System (INIS)

    Kim, Kwang Seok; Lee, Sang Yul; Lee, Eui Yeoul

    1999-01-01

    STS403 stainless steel substrate was treated by duplex treatment of chromizing and boronizing. Metallographic cross sections of the treated specimens were consisted of duplex layer, layer, Cr diffusion layer, and matrix. Microstructures of duplex layer and others layers formed on STS403 were examined by OM, SEM, EDS, XRD and surface properties of duplex layer were evaluated by micro-Vickers hardness tester, wear tester and corrosion tester. From the XRD analysis of the duplex layer, various phases such as FeB, Fe 2 B, CrB were identified. The results from EDS analysis showed that intermedium layer contained much more Cr than any other layers. The activation energy for the diffusion of boron in the chromium diffusion layer in the duplex treated STS403 steel was calculated to be approximately 220kJ/mole, which was higher than the diffusional activation energy of boron in the STS403 steel, 160kJ/mole. Microhardness of duplex layer was measured to be approximately Hv1800∼2000 (50 gf). On high temperature wear testing at 600 .deg. C, duplex treated specimen exhibited an excellent wear resistance, showing that the wear volume of the duplex treated specimen was approximately five times smaller than that of untreated specimen. From the result of anodic polarization curves in 1M, H 2 SO 4 solution, duplex treated specimen showed an excellent corrosion resistance than the specimen treated by boronizing only

  2. Functional role of fouling community on an artificial reef at the northern coast of Rio de Janeiro State, Brazil

    Directory of Open Access Journals (Sweden)

    Werther Krohling

    2006-12-01

    Full Text Available The northern coast of Rio de Janeiro State lacks natural consolidate substrates, making it a proper environment to the development of researches using artificial structures. After studies about the type of substrate, concrete seems to be the most appropriate for studying fouling community development. This research was carried out to investigate the functional role of biofouling in the development of the ichthyic community in the north of Rio de Janeiro State. Percentage data of the epibenthic organisms' coverage and samples of the fish community with gillnet and visual census showed that biofouling in artificial reefs might have more than one functional role, acting as a facilitator in the recruitment of fish species and as a link in the trophic marine chain. Through the increase of localized structural complexity provided by the reef itself and by the fouling organisms which act as "engineering species", additional protection options are offered to the ichthyic community, especially recruits. Also, the epibiont biomass represents an important link in the food web, acting either as a direct source or in the transference of energy to higher trophic levels. Through the relationship between the ichthyic and fouling communities we concluded that the functional role of the latter in artificial reef habitats could be characterized mainly as shelter and feeding grounds for few fish species.O litoral norte do Estado do Rio de Janeiro possui uma escassez de substrato consolidado natural tornando o ambiente propício para o desenvolvimento de pesquisas com estruturas artificiais. Após estudos conclusivos sobre o tipo de substrato, o concreto parece ser o mais apropriado para o desenvolvimento da comunidade incrustante. Novas pesquisas foram realizadas para investigar o papel funcional da bioincrustação no desenvolvimento da comunidade íctica no norte do Estado do Rio de Janeiro. Dados de porcentagem de cobertura dos organismos epibênticos e

  3. Population Study of the Hawksbill Turtle Eretmochelys imbricata (Cheloniidae in the Southern Pacific region of Colombia

    Directory of Open Access Journals (Sweden)

    Alexander Tobón-López

    2014-09-01

    Full Text Available El objetivo de esta investigación fue conocer aspectos poblacionales, biológicos y ecológicos de las tortugas carey (Eretmochelys imbricata presentes en el Pacífico sur de Colombia (Departamento del Cauca, para esto se tomó información de morfometría, se revisó el estado de salud de los individuos y se tomaron muestras de sangre para valoración de química sanguínea. Durante siete meses de muestreo se capturaron 25 tortugas carey (16 individuos diferentes en los arrecifes del Parque Nacional Natural Gorgona, con un porcentaje de recaptura del 46 %. Aunque no se notaron problemas evidentes de salud, la mayoría de animales presentaron gran parte del caparazón cubierto de algas filamentosas y algunos epibiontes sobre el plastrón y el caparazón. La Longitud Curva Caparazón (LCC mostró una mayor proporción de individuos con tallas entre 37 y 45 cm de longitud (prom. 42,3 cm; min. 37,5 cm; max. 58 cm. Por medio de la prueba de Mann Whitney U, se comparó la LCC de los 16 individuos diferentes capturados en el PNN Gorgona, con 11 individuos capturados en la zona del litoral del Departamento del Cauca, encontrándose diferencias significativas entre estos dos grupos, donde los animales presentes en el PNN Gorgona fueron de mayor talla que los presentes en el continente (Z = -2,59; p = 0,007. Los valores de ácido úrico se encontraron por encima de los valores de referencia.

  4. Distribution of bacteria and associated minerals in the gill chamber of the vent shrimp Rimicaris exoculata and related biogeochemical processes

    Science.gov (United States)

    Zbinden, M.; Le Bris, N.; Compere, P.; Gaill, F.

    2004-12-01

    The shrimp Rimicaris exoculata dominates the megafauna of some mid-Atlantic Ridge hydrothermal vent fields. This species harbors a rich bacterial epibiosis inside its gill chamber. At the Rainbow vent field, the epibionts are associated with iron oxide deposits. Investigation of both bacteria and minerals by scanning electron microscopy (SEM) and X-ray microanalysis (EDX) shows the occurrence of three distinct compartments in the gill chamber: (1) the lower pre-branchial chamber, housing bacteria, but devoid of minerals, (2) the "true" branchial chamber that contains the gills and remains free of both bacteria and minerals, and (3) the upper pre-branchial chamber housing the main ectosymbiotic bacterial community and associated iron oxides. According to our chemical and temperature data, abiotic iron oxidation appears to be kinetically inhibited in the environment of the shrimps and this would explain the lack of iron oxide deposits in the first two areas. We propose that, in the third area, iron oxidation is microbially promoted. The discrepancy between the spatial distribution of bacteria and minerals suggests that different bacterial metabolisms are involved in the two compartments. A possible explanation lies in the modification of physico-chemical conditions downstream of the gills, that would reduce the oxygen content and favor the development of bacterial iron-oxidizers in this Fe II-rich environment. A potential role of such iron-oxidizing symbionts in the shrimp diet is suggested. This would be unusual for hydrothermal ecosystems, where most previously described symbioses rely on sulphide or methane as an energy source.

  5. Dark production of extracellular superoxide by the coral Porites astreoides and representative symbionts

    Directory of Open Access Journals (Sweden)

    Tong Zhang

    2016-11-01

    Full Text Available The reactive oxygen species (ROS superoxide has been implicated in both beneficial and detrimental processes in coral biology, ranging from pathogenic disease resistance to coral bleaching. Despite the critical role of ROS in coral health, there is a distinct lack of ROS measurements and thus an incomplete understanding of underpinning ROS sources and production mechanisms within coral systems. Here, we quantified in situ extracellular superoxide concentrations at the surfaces of aquaria-hosted Porites astreoides during a diel cycle. High concentrations of superoxide (~10’s of nM were present at coral surfaces, and these levels did not change significantly as a function of time of day. These results indicate that the coral holobiont produces extracellular superoxide in the dark, independent of photosynthesis. As a short-lived anion at physiological pH, superoxide has a limited ability to cross intact biological membranes. Further, removing surface mucus layers from the P. astreoides colonies did not impact external superoxide concentrations. We therefore attribute external superoxide derived from the coral holobiont under these conditions to the activity of the coral host epithelium, rather than mucus-derived epibionts or internal sources such as endosymbionts (e.g., Symbiodinium. However, endosymbionts likely contribute to internal ROS levels via extracellular superoxide production. Indeed, common coral symbionts, including multiple strains of Symbiodinium (clades A to D and the bacterium Endozoicomonas montiporae LMG 24815, produced extracellular superoxide in the dark and at low light levels. Further, representative P. astreoides symbionts, Symbiodinium CCMP2456 (clade A and E. montiporae, produced similar concentrations of superoxide alone and in combination with each other, in the dark and low light, and regardless of time of day. Overall, these results indicate that healthy, non-stressed P. astreoides and representative symbionts produce

  6. Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering.

    Directory of Open Access Journals (Sweden)

    Dominique A Cowart

    Full Text Available Prokaryotic communities forming symbiotic relationships with the vent shrimp, Rimicaris exoculata, are well studied components of hydrothermal ecosystems at the Mid-Atlantic Ridge (MAR. Despite the tight link between host and symbiont, the observed lack of spatial genetic structure seen in R. exoculata contrasts with the geographic differentiation detected in specific bacterial ectosymbionts. The geographic clustering of bacterial lineages within a seemingly panmictic host suggests either the presence of finer scale restriction to gene flow not yet detected in the host, horizontal transmission (environmental selection of its endosymbionts as a consequence of unique vent geochemistry, or vertically transmitted endosymbionts that exhibit genetic differentiation. To identify which hypothesis best fits, we tested whether bacterial assemblages exhibit differentiation across sites or host populations by performing a 16S rRNA metabarcoding survey on R. exoculata digestive prokaryote samples (n = 31 taken from three geochemically distinct vents across MAR: Rainbow, Trans-Atlantic Geotraverse (TAG and Logatchev. Analysis of communities across two organs (digestive tract, stomach, three molt colors (white, red, black and three life stages (eggs, juveniles, adults also provided insights into symbiont transmission mode. Examining both whole communities and operational taxonomic units (OTUs confirmed the presence of three main epibionts: Epsilonproteobacteria, Mollicutes and Deferribacteres. With these findings, we identified a clear pattern of geographic segregation by vent in OTUs assigned to Epsilonproteobacteria. Additionally, we detected evidence for differentiation among all communities associated to vents and life stages. Overall, results suggest a combination of environmental selection and vertical inheritance of some of the symbiotic lineages.

  7. To Swim or Not to Swim: Potential Transmission of Balaenophilus manatorum (Copepoda: Harpacticoida) in Marine Turtles.

    Science.gov (United States)

    Domènech, Francesc; Tomás, Jesús; Crespo-Picazo, José Luis; García-Párraga, Daniel; Raga, Juan Antonio; Aznar, Francisco Javier

    2017-01-01

    Species of Balaenophilus are the only harpacticoid copepods that exhibit a widespread, obligate association with vertebrates, i.e., B. unisetus with whales and B. manatorum with marine turtles and manatees. In the western Mediterranean, juveniles of the loggerhead sea turtle, Caretta caretta are the only available hosts for B. manatorum, which has been found occurring at high prevalence (>80%) on them. A key question is how these epibionts are transmitted from host to host. We investigated this issue based on experiments with live specimens of B. manatorum that were cultured with turtle skin. Specimens were obtained from head-started hatchlings of C. caretta from the western Mediterranean. Hatched nauplii crawled only on rough substrates and lacked the ability to swim. Only copepodites IV and V, and adults, were able to perform directional swimming. Legs 2, 3 and 4 played a major role in swimming and were only well-developed in these stages. Nauplii reared in wells with turtle skin readily fed on this item. Late copepodites and adults also fed on turtle skin but did not consume other potential food items such as fish skin, baleen plates or planktonic algae. Evidences suggest that the transmission of B. manatorum should rely on hosts' bodily contacts and/or swimming of late developmental stages between spatially close hosts. The possibility of long-ranged dispersal is unlikely for two reasons. First, all developmental stages seem to depend on turtle skin as a food resource. Second, the average clutch size of ovigerous females was small (turtles that occur at very low densities (turtles·km-2) in the western Mediterranean. The high prevalence of B. manatorum in loggerhead turtles in this area raises the question whether these turtles have contacts, or tend to closely aggregate, more than is currently believed.

  8. Biodiversity of prokaryotic communities associated with the ectoderm of Ectopleura crocea (Cnidaria, Hydrozoa.

    Directory of Open Access Journals (Sweden)

    Cristina Gioia Di Camillo

    Full Text Available The surface of many marine organisms is colonized by complex communities of microbes, yet our understanding of the diversity and role of host-associated microbes is still limited. We investigated the association between Ectopleura crocea (a colonial hydroid distributed worldwide in temperate waters and prokaryotic assemblages colonizing the hydranth surface. We used, for the first time on a marine hydroid, a combination of electron and epifluorescence microscopy and 16S rDNA tag pyrosequencing to investigate the associated prokaryotic diversity. Dense assemblages of prokaryotes were associated with the hydrant surface. Two microbial morphotypes were observed: one horseshoe-shaped and one fusiform, worm-like. These prokaryotes were observed on the hydrozoan epidermis, but not in the portions covered by the perisarcal exoskeleton, and their abundance was higher in March while decreased in late spring. Molecular analyses showed that assemblages were dominated by Bacteria rather than Archaea. Bacterial assemblages were highly diversified, with up to 113 genera and 570 Operational Taxonomic Units (OTUs, many of which were rare and contributed to <0.4%. The two most abundant OTUs, likely corresponding to the two morphotypes present on the epidermis, were distantly related to Comamonadaceae (genus Delftia and to Flavobacteriaceae (genus Polaribacter. Epibiontic bacteria were found on E. crocea from different geographic areas but not in other hydroid species in the same areas, suggesting that the host-microbe association is species-specific. This is the first detailed report of bacteria living on the hydrozoan epidermis, and indeed the first study reporting bacteria associated with the epithelium of E. crocea. Our results provide a starting point for future studies aiming at clarifying the role of this peculiar hydrozoan-bacterial association.

  9. Ecological modulation of environmental stress: interactions between ultraviolet radiation, epibiotic snail embryos, plants and herbivores.

    Science.gov (United States)

    Wahl, Martin

    2008-05-01

    1. The distribution of egg masses of the freshwater snails Lymnaea stagnalis and Planorbarius corneus on the undersides of water lily leaves (e.g. Nuphar lutea) is related to the prevalence of the leaf-mining beetle Galerucella nymphaeae. 2. When given the choice, Planorbarius significantly avoids leaves that were infested by the mining beetle. Conversely, Lymnaea did not discriminate against mined leaves. 3. Intact Nuphar leaves block over 95% of incident ultraviolet radiation. Yet, ultraviolet transmission reaches almost 100% under beetle mining scars. These are several times wider than snail embryos. 4. When exposed to natural sunlight, Lymnaea embryos proved to be resistant to ambient ultraviolet, while Planorbarius embryos were rapidly killed. Thus, one selective advantage of Planorbarius discrimination against mined leaves when depositing its eggs could be the avoidance of ultraviolet radiation passing through mining scars. 5. Other mining-related modifications of the leaves, reduced area, decreased longevity, altered aufwuchs (i.e. biofilm and epibionts) are discussed but seem less relevant for the oviposition preference of Planorbarius. 6. The discriminatory behaviour of this snail species was triggered by water-borne cues emitted by the damaged leaf, not by the eggs or larvae of the beetle. 7. This study illustrates how environmental stress on a given species, ultraviolet radiation in this case, can be ecologically buffered (shading by Nuphar) or enhanced (reduction of Nuphar shading through beetle mining) by associated species. It highlights how the impact of a given stress depends on the identity of the target species as well as on the identity and role of other species in the community.

  10. To Swim or Not to Swim: Potential Transmission of Balaenophilus manatorum (Copepoda: Harpacticoida in Marine Turtles.

    Directory of Open Access Journals (Sweden)

    Francesc Domènech

    Full Text Available Species of Balaenophilus are the only harpacticoid copepods that exhibit a widespread, obligate association with vertebrates, i.e., B. unisetus with whales and B. manatorum with marine turtles and manatees. In the western Mediterranean, juveniles of the loggerhead sea turtle, Caretta caretta are the only available hosts for B. manatorum, which has been found occurring at high prevalence (>80% on them. A key question is how these epibionts are transmitted from host to host. We investigated this issue based on experiments with live specimens of B. manatorum that were cultured with turtle skin. Specimens were obtained from head-started hatchlings of C. caretta from the western Mediterranean. Hatched nauplii crawled only on rough substrates and lacked the ability to swim. Only copepodites IV and V, and adults, were able to perform directional swimming. Legs 2, 3 and 4 played a major role in swimming and were only well-developed in these stages. Nauplii reared in wells with turtle skin readily fed on this item. Late copepodites and adults also fed on turtle skin but did not consume other potential food items such as fish skin, baleen plates or planktonic algae. Evidences suggest that the transmission of B. manatorum should rely on hosts' bodily contacts and/or swimming of late developmental stages between spatially close hosts. The possibility of long-ranged dispersal is unlikely for two reasons. First, all developmental stages seem to depend on turtle skin as a food resource. Second, the average clutch size of ovigerous females was small (< 70 eggs for free-living phases to successfully contact turtles that occur at very low densities (< 0.6 turtles·km-2 in the western Mediterranean. The high prevalence of B. manatorum in loggerhead turtles in this area raises the question whether these turtles have contacts, or tend to closely aggregate, more than is currently believed.

  11. The variable routes of rafting: stranding dynamics of floating bull kelp Durvillaea antarctica (Fucales, Phaeophyceae) on beaches in the SE Pacific.

    Science.gov (United States)

    López, Boris A; Macaya, Erasmo C; Tala, Fadia; Tellier, Florence; Thiel, Martin

    2017-02-01

    Dispersal on floating seaweeds depends on availability, viability, and trajectories of the rafts. In the southern hemisphere, the bull kelp Durvillaea antarctica is one of the most common floating seaweeds, but phylogeographic studies had shown low connectivity between populations from continental Chile, which could be due to limitations in local supply and dispersal of floating kelps. To test this hypothesis, the spatiotemporal dynamics of kelp strandings were examined in four biogeographic districts along the Chilean coast (28°-42°S). We determined the biomass and demography of stranded individuals on 33 beaches for three subsequent years (2013, 2014, 2015) to examine whether rafting is restricted to certain districts and seasons (winter or summer). Stranded kelps were found on all beaches. Most kelps had only one stipe (one individual), although we also frequently found coalesced holdfasts with mature males and females, which would facilitate successful rafting dispersal, gamete release, and reproduction upon arrival. High biomasses of stranded kelps occurred in the northern-central (30°S-33°S) and southernmost districts (37°S-42°S), and lower biomasses in the northernmost (28°S-30°S) and southern-central districts (33°S-37°S). The highest percentages and sizes of epibionts (Lepas spp.), indicative of prolonged floating periods, were found on stranded kelps in the northernmost and southernmost districts. Based on these results, we conclude that rafting dispersal can vary regionally, being more common in the northernmost and southernmost districts, depending on intrinsic (seaweed biology) and extrinsic factors (shore morphology and oceanography) that affect local supply of kelps and regional hydrodynamics. © 2016 Phycological Society of America.

  12. Do native grazers from Patagonia, Argentina, consume the invasive kelp Undaria pinnatifida? ¿Pueden los pastoreadores nativos de Patagonia, Argentina, consumir al alga invasora Undaria pinnatifida?

    Directory of Open Access Journals (Sweden)

    S. Valeria Teso

    2009-06-01

    Full Text Available The invasive kelp Undaria pinnatifida (Phaeophyceae, Laminariales was first reported in Golfo Nuevo in 1992 and since then it has spread widely over more than 170 km, all along the northern Patagonian coast, Argentina. Field observations in the region have indicated the potential role of invertebrate grazers, like the sea urchins Arbacia dufresnii and Pseudechinus magellanicus and the gastropod Tegula patagonica, in controlling algal density. Laboratory experiments were conducted to ascertain whether, and if so, to what extent these grazers actually feed on the algae. The studied sea urchins fed on the alga, whereas the snail scraped off biofouling adhered to its surface. Higher densities of grazers were observed on the kelp during summer and might be attributed to increasing in metabolism with increasing temperature, and degradation of blades and sporophylls, which possibly increase their palatability.El alga invasora Undaria pinnatifida (Phaeophyceae, Laminariales fue reportada por primera vez en Golfo Nuevo en 1992, dispersándose ampliamente a lo largo de 170 km de costa en el norte de la Patagonia, Argentina. Observaciones de campo hechas en los erizos de mar Arbacia dufresnii y Pseudechinus magellanicus y en el gasterópodo Tegula patagonica evidenciaron que son posibles consumidores de Undaria pinnatifida en la población local. Se realizaron experimentos de laboratorio con el objetivo de probar si estos pastoreadores eran capaces de consumir el alga. Los erizos de mar estudiados consumen el alga, mientras que el gasterópodo ramonea los epibiontes presentes sobre su superficie. Altas densidades de ramoneadores fueron encontradas sobre el alga durante el verano y podrían ser atribuidas a un aumento del su metabolismo con el aumento de la temperatura y a la degradación de las láminas y esporofilos, lo cual posiblemente aumente la palatabilidad del alga.

  13. Mechanisms of metal tolerance in marine macroalgae, with emphasis on copper tolerance in Chlorophyta and Rhodophyta.

    Science.gov (United States)

    Moenne, Alejandra; González, Alberto; Sáez, Claudio A

    2016-07-01

    Green and red macroalgae are closely related organisms, and with terrestrial plants, and constitute the base of marine food webs in coastal ecosystems. Green and red seaweeds, as all living organisms, require essential metals, such as copper, iron, zinc, which can act as co-factors for several proteins and enzymes; however, these metals in excess can induce stress and impair cell viability. Most important negative effects of metal excess are related to the induction of an oxidative stress condition, characterized by the over-accumulation of Reactive Oxygen Species (ROS). In this respect, copper, abundant in wastewaters disposed to coastal environments from domestic and industrial activities, has been one of the most studied metals. Different investigations have provided evidence that green and red macroalgae display several defenses against copper excess to prevent, or at least reduce, stress and damage, among which are cellular exclusion mechanisms, synthesis of metal-chelating compounds, and the activation of the antioxidant system. Most important defense mechanisms identified in green and red seaweed involve: metal-binding to cell wall and epibionts; syntheses of metallothioneins and phytochelatins that accumulate in the cytoplasm; and the increase in the activity of antioxidant enzymes such as superoxide dismutase, ascorbate peroxidase, glutathione peroxidase and catalase, and greater production of antioxidant metabolites as glutathione and ascorbate in organelles and the cytoplasm. In this review, we go through historical records, latest advances, and pending tasks aiming to expand our current knowledge on defense mechanisms to copper excess in green and red macroalgae, with emphasis on biochemical and molecular aspects. Copyright © 2016 Elsevier B.V. All rights reserved.

  14. Metabolism in the Uncultivated Giant Sulfide-Oxidizing Bacterium Thiomargarita Namibiensis Assayed Using a Redox-Sensitive Dye

    Science.gov (United States)

    Bailey, J.; Flood, B.; Ricci, E.

    2014-12-01

    The colorless sulfur bacteria are non-photosynthetic chemolithotrophs that live at interfaces between nitrate, or oxygen, and hydrogen sulfide. In sulfidic settings such as cold seeps and oxygen minimum zones, these bacteria are thought to constitute a critical node in the geochemical cycling of carbon, sulfur, nitrogen, and phosphorous. Many of these bacteria remain uncultivated and their metabolisms and physiologies are incompletely understood. Thiomargarita namibiensis is the largest of these sulfur bacteria, with individual cells reaching millimetric diameters. Despite the current inability to maintain a Thiomargarita culture in the lab, their large size allows for individual cells to be followed in time course experiments. Here we report on the novel use of a tetrazolium-based dye that measures the flux of NADH production from catabolic pathways via a colorimetric response. Staining with this dye allows for metabolism to be detected, even in the absence of observable cell division. When coupled to microscopy, this approach also allows for metabolism in Thiomargaritato be differentiated from that of epibionts or contaminants in xenic samples. The results of our tetrazolium dye-based assay suggests that Thiomargarita is the most metabolically versatile under anoxic conditions where it appears capable of using acetate, succinate, formate, thiosulfate, citrate, thiotaurine, hydrogen sulfide, and perhaps hydrogen as electron donors. Under hypoxic conditions, staining results suggest the utilization of acetate, citrate, and hydrogen sulfide. Cells incubated under oxic conditions showed the weakest tetrazolium staining response, and then only to hydrogen sulfide and questionably succinate. These initial results using a redox sensitive dye suggest that Thiomargarita is most metabolically versatile under anaerobic and hypoxic conditions. The results of this assay can be further evaluated using molecular approaches such as transcriptomics, as well as provide cultivation

  15. Effect of temperature rise and ocean acidification on growth of calcifying tubeworm shells (Spirorbis spirorbis): an in situ benthocosm approach

    Science.gov (United States)

    Ni, Sha; Taubner, Isabelle; Böhm, Florian; Winde, Vera; Böttcher, Michael E.

    2018-03-01

    The calcareous tubeworm Spirorbis spirorbis is a widespread serpulid species in the Baltic Sea, where it commonly grows as an epibiont on brown macroalgae (genus Fucus). It lives within a Mg-calcite shell and could be affected by ocean acidification and temperature rise induced by the predicted future atmospheric CO2 increase. However, Spirorbis tubes grow in a chemically modified boundary layer around the algae, which may mitigate acidification. In order to investigate how increasing temperature and rising pCO2 may influence S. spirorbis shell growth we carried out four seasonal experiments in the Kiel Outdoor Benthocosms at elevated pCO2 and temperature conditions. Compared to laboratory batch culture experiments the benthocosm approach provides a better representation of natural conditions for physical and biological ecosystem parameters, including seasonal variations. We find that growth rates of S. spirorbis are significantly controlled by ontogenetic and seasonal effects. The length of the newly grown tube is inversely related to the initial diameter of the shell. Our study showed no significant difference of the growth rates between ambient atmospheric and elevated (1100 ppm) pCO2 conditions. No influence of daily average CaCO3 saturation state on the growth rates of S. spirorbis was observed. We found, however, net growth of the shells even in temporarily undersaturated bulk solutions, under conditions that concurrently favoured selective shell surface dissolution. The results suggest an overall resistance of S. spirorbis growth to acidification levels predicted for the year 2100 in the Baltic Sea. In contrast, S. spirorbis did not survive at mean seasonal temperatures exceeding 24 °C during the summer experiments. In the autumn experiments at ambient pCO2, the growth rates of juvenile S. spirorbis were higher under elevated temperature conditions. The results reveal that S. spirorbis may prefer moderately warmer conditions during their early life stages

  16. Spatiotemporal dynamics of the bacterial microbiota on lacustrine Cladophora glomerata (Chlorophyta).

    Science.gov (United States)

    Braus, Michael J; Graham, Linda E; Whitman, Thea L

    2017-12-01

    The branched periphytic green alga Cladophora glomerata, often abundant in nearshore waters of lakes and rivers worldwide, plays important ecosystem roles, some mediated by epibiotic microbiota that benefit from host-provided surface, organic C, and O 2 . Previous microscopy and high-throughput sequencing studies have indicated surprising epibiont taxonomic and functional diversity, but have not included adequate consideration of sample replication or the potential for spatial and temporal variation. Here, we report the results of 16S rRNA amplicon-based phylum-to-genus taxonomic analysis of Cladophora-associated bacterial epibiota sampled in replicate from three microsites and at six times during the open-water season of 2014, from the same lake locale (Picnic Point, Lake Mendota, Dane Co., WI, USA) explored by high-throughput sequencing studies in two previous years. Statistical methods were used to test null hypotheses that the bacterial community: (i) is homogeneous across microsites tested, and (ii) does not change over the course of a growth season or among successive years. Results indicated a dynamic microbial community that is more strongly influenced by sampling day during the growth season than by microsite variation. A surprising diversity of bacterial genera known to be associated with the key function of methane-oxidation (methanotrophy), including relatively high-abundance of Crenothrix, Methylomonas, Methylovulum, and Methylocaldum-showed intraseasonal and interannual variability possibly related to temperature differences, and microsite preferences possibly related to variation in methane abundance. By contrast, a core assemblage of bacterial genera seems to persist over a growth season and from year to year, possibly transmitted by a persistent attached host resting stage. © 2017 Phycological Society of America.

  17. Seasonal changes in the δ13C and δ15N signatures of the Lago Maggiore pelagic food web

    Directory of Open Access Journals (Sweden)

    Marina MANCA

    2011-08-01

    Full Text Available Seasonal variation in the relative contributions of littoral and pelagic food sources to the diets of open-water zooplankton and subsequent changes in their trophic positions were investigated with carbon and nitrogen Stable Isotope Analysis (SIA. We selected three open water stations as truly pelagic, but also influenced by littoral and riverine carbon sources. During each of the four seasons, integrated pelagic zooplankton samples were collected over 0-50 m depth intervals at each site along with seston in the size range 1.2-76 μm. In addition, vertical temperature profiles were measured. Littoral benthos from three sites along the main longitudinal axis of the lake was sampled to serve as a reference for tracing Lago Maggiore's littoral carbon isotopic signature. Among stations differences in δ13C and δ15N signatures of the different components of the pelagic food web, from seston to predatory zooplankton, were statistically non significant, thus confirming that allochthonous input may become important only after exceptional rainfall events. Changes in the δ13C pelagic baseline mirrored mean water temperature (0-50 m seasonal changes. Similarly to Lake Geneva, they were likely driven by changes in carbon sources for phytoplankton growth during stratification and vertical water mixing. Differently from what observed for the other taxa, the role of littoral food sources was far from negligible (>50% for diaptomids during winter and spring. We do not know however, whether such a result could be at least partially attributed to the heavy infestation by algal epibionts, or was consequent to the fact that these zooplankters may carry littoral carbon to the pelagial via horizontal migration. In winter, Bythotrephes longimanus was able to prey on Cyclops, thus occupying a trophic position comparable to that of planktivorous fish. Such a result confirms an ability of this visual, invertebrate predator to compete with young zooplanktivorous fish

  18. Setal morphology of the grooming appendages of Macrobrachium rosenbergii (Crustacea: Decapoda: Caridea: Palaemonidae) and review of decapod setal classification.

    Science.gov (United States)

    Wortham, Jennifer L; Vanmaurik, Lauren N; Wayne Price, W

    2014-06-01

    Setae are vital in grooming activities and aiding in the removal of epibionts and sedimentary fouling from the body surfaces of decapod crustaceans. Thus, the setal structures and their arrangement on the grooming appendages and sensory structures of the commercially important shrimp, Macrobrachium rosenbergii, were examined using scanning electron microscopy. Macrobrachium rosenbergii is extensively grown in aquaculture and exhibits unique male morphological forms, termed morphotypes. The three male morphotypes are termed blue-clawed males, orange-clawed males, and small-clawed or undifferentiated males and all three differ in their dominance, behavior, body morphology, and reproductive success. Seven setal types, two of which have never been described in the literature, are identified on the grooming appendages (third maxillipeds, first, second, and fifth pereopods) and antennae: simple, serrate, serrulate, spiniform, pappose, crinoid, and spinulate. The latter two setae are newly identified. Certain setal types, such as serrate and serrulate setae were located and associated with specific grooming appendages such as the first pereopods. The types of setae on the grooming appendages varied among females and male morphotypes and the novel setal types (crinoid and spinulate) were found only on two of the male morphotypes. A literature review of terminology related to the structure of setae and setal types in decapod crustaceans is offered as the usage of various terms is ambiguous and conflicting in the literature. The intention of this review is to provide future authors with a comprehensive collection of terms and images that can be used to describe various aspects of setal morphology in decapods. Copyright © 2014 Wiley Periodicals, Inc.

  19. Conservation systematics of the shield-backed trapdoor spiders of the nigrum-group (Mygalomorphae, Idiopidae, Idiosoma): integrative taxonomy reveals a diverse and threatened fauna from south-western Australia.

    Science.gov (United States)

    Rix, Michael G; Huey, Joel A; Cooper, Steven J B; Austin, Andrew D; Harvey, Mark S

    2018-01-01

    The aganippine shield-backed trapdoor spiders of the monophyletic nigrum -group of Idiosoma Ausserer s. l. are revised, and 15 new species are described from Western Australia and the Eyre Peninsula of South Australia: I. arenaceum Rix & Harvey, sp. n. , I. corrugatum Rix & Harvey, sp. n. , I. clypeatum Rix & Harvey, sp. n. , I. dandaragan Rix & Harvey, sp. n. , I. formosum Rix & Harvey, sp. n. , I. gardneri Rix & Harvey, sp. n. , I. gutharuka Rix & Harvey, sp. n. , I. incomptum Rix & Harvey, sp. n. , I. intermedium Rix & Harvey, sp. n. , I. jarrah Rix & Harvey, sp. n. , I. kopejtkaorum Rix & Harvey, sp. n. , I. kwongan Rix & Harvey, sp. n. , I. mcclementsorum Rix & Harvey, sp. n. , I. mcnamarai Rix & Harvey, sp. n. , and I. schoknechtorum Rix & Harvey, sp. n. Two previously described species from south-western Western Australia, I. nigrum Main, 1952 and I. sigillatum (O. P.-Cambridge, 1870), are re-illustrated and re-diagnosed, and complementary molecular data for 14 species and seven genes are analysed with Bayesian methods. Members of the nigrum -group are of long-standing conservation significance, and I. nigrum is the only spider in Australia to be afforded threatened species status under both State and Commonwealth legislation. Two other species, I. formosum Rix & Harvey, sp. n. and I. kopejtkaorum Rix & Harvey, sp. n. , are also formally listed as Endangered under Western Australian State legislation. Here we significantly relimit I. nigrum to include only those populations from the central and central-western Wheatbelt bioregion, and further document the known diversity and conservation status of all known species.

  20. Conservation systematics of the shield-backed trapdoor spiders of the nigrum-group (Mygalomorphae, Idiopidae, Idiosoma: integrative taxonomy reveals a diverse and threatened fauna from south-western Australia

    Directory of Open Access Journals (Sweden)

    Michael G. Rix

    2018-05-01

    Full Text Available The aganippine shield-backed trapdoor spiders of the monophyletic nigrum-group of Idiosoma Ausserer s. l. are revised, and 15 new species are described from Western Australia and the Eyre Peninsula of South Australia: I. arenaceum Rix & Harvey, sp. n., I. corrugatum Rix & Harvey, sp. n., I. clypeatum Rix & Harvey, sp. n., I. dandaragan Rix & Harvey, sp. n., I. formosum Rix & Harvey, sp. n., I. gardneri Rix & Harvey, sp. n., I. gutharuka Rix & Harvey, sp. n., I. incomptum Rix & Harvey, sp. n., I. intermedium Rix & Harvey, sp. n., I. jarrah Rix & Harvey, sp. n., I. kopejtkaorum Rix & Harvey, sp. n., I. kwongan Rix & Harvey, sp. n., I. mcclementsorum Rix & Harvey, sp. n., I. mcnamarai Rix & Harvey, sp. n., and I. schoknechtorum Rix & Harvey, sp. n. Two previously described species from south-western Western Australia, I. nigrum Main, 1952 and I. sigillatum (O. P.-Cambridge, 1870, are re-illustrated and re-diagnosed, and complementary molecular data for 14 species and seven genes are analysed with Bayesian methods. Members of the nigrum-group are of long-standing conservation significance, and I. nigrum is the only spider in Australia to be afforded threatened species status under both State and Commonwealth legislation. Two other species, I. formosum Rix & Harvey, sp. n. and I. kopejtkaorum Rix & Harvey, sp. n., are also formally listed as Endangered under Western Australian State legislation. Here we significantly relimit I. nigrum to include only those populations from the central and central-western Wheatbelt bioregion, and further document the known diversity and conservation status of all known species.

  1. Evaluation of modified dichloran 18% glycerol (DG18) agar for enumerating fungi in wheat flour: a collaborative study.

    Science.gov (United States)

    Beuchat, L R; Hwang, C A

    1996-04-01

    Dichloran 18% glycerol agar base supplemented with 100 micrograms of chloramphenicol ml-1 (DG18 agar) was compared to DG18 agar supplemented with 100 micrograms of Triton X-301 ml-1 (DG18T) and DG18 agar supplemented with 1 microgram of iprodione [3-(3,5-dichlorophenyl)-N-(1-methyl-ethyl)-2,4-dioxo-1-imidazolidine- carboxamide] ml-1 (DG18I agar) for enumeration of fungi in ten brands of wheat flour. As the flours contained low fungal populations, all were inoculated with two to four strains of xerophilic fungi (Aspergillus candidus, A. penicillioides, Eurotium amstelodami, E. intermedium, E. repens, E. rubrum, E. tonophilum, E. umbrosum and Wallemia sebi), after which counts ranged from 3.87 to 6.37 log10 CFU g-1. Significantly higher populations (p repens or E. tonophilum had also been inoculated into at least one of the three flours showing significantly higher numbers of CFU on DG18T agar. Analysis of collapsed data from all samples showed that DG18T agar was significantly better than DG18 or DG18I agars at p < 0.10 but not at p < 0.05. Coefficients of variation for reproducibility (among-laboratory variation) were 8.4%, 7.5% and 8.6%, respectively, for DG18, DG18T and DG18I agars. DG18I agar restricted colony development most, especially for Eurotium species. Naturally occurring Penicillium species grew equally well on DG18 and DG18T agars, whereas W. sebi grew well on all three media. DG18T agar was judged to be superior to DG18 and DG18I agars for enumerating fungi in wheat flours.

  2. The Performance of Early-Generation Perennial Winter Cereals at 21 Sites across Four Continents

    Directory of Open Access Journals (Sweden)

    Richard C. Hayes

    2018-04-01

    Full Text Available A network of 21 experiments was established across nine countries on four continents and spanning both hemispheres, to evaluate the relative performance of early generation perennial cereal material derived from wheat, rye, and barley and to inform future breeding strategies. The experimental lines were grown in replicated single rows, and first year production and phenology characteristics as well as yield and persistence for up to three years were monitored. The study showed that the existing experimental material is all relatively short-lived (≤3 years, with environments that are milder in summer and winter generally conferring greater longevity. No pedigree was superior across this diverse network of sites although better performing lines at the higher latitude sites were generally derived from Thinopyrum intermedium. By contrast, at lower latitudes the superior lines were generally derived from Th. ponticum and Th. elongatum parentage. The study observed a poor relationship between year 1 performance and productivity in later years, highlighting the need for perennial cereal material with greater longevity to underpin future experimental evaluation, and the importance for breeding programs to emphasize post-year 1 performance in their selections. Hybrid lines derived from the tetraploid durum wheat generally showed greater longevity than derivatives of hexaploid wheat, highlighting potential for greater use of Triticum turgidum in perennial wheat breeding. We advocate a model in future breeding initiatives that develops perennial cereal genotypes for specific target environments rather than a generic product for one global market. These products may include a diversity of cultivars derived from locally adapted annual and perennial parents. In this scenario the breeding program may have access to only a limited range of adapted perennial grass parents. In other situations, such as at very high latitude environments, perennial crops derived

  3. Transmitter receptors reveal segregation of the arcopallium/amygdala complex in pigeons (Columba livia).

    Science.gov (United States)

    Herold, Christina; Paulitschek, Christina; Palomero-Gallagher, Nicola; Güntürkün, Onur; Zilles, Karl

    2018-02-15

    At the beginning of the 20th century it was suggested that a complex group of nuclei in the avian posterior ventral telencephalon is comparable to the mammalian amygdala. Subsequent findings, however, revealed that most of these structures share premotor characteristics, while some indeed constitute the avian amygdala. These developments resulted in 2004 in a change of nomenclature of these nuclei, which from then on were named arcopallial or amygdala nuclei and referred to as the arcopallium/amygdala complex. The structural basis for the similarities between avian and mammalian arcopallial and amygdala subregions is poorly understood. Therefore, we analyzed binding site densities for glutamatergic AMPA, NMDA and kainate, GABAergic GABA A , muscarinic M 1 , M 2 and nicotinic acetylcholine (nACh; α 4 β 2 subtype), noradrenergic α 1 and α 2 , serotonergic 5-HT 1A and dopaminergic D 1/5 receptors using quantitative in vitro receptor autoradiography combined with a detailed analysis of the cyto- and myelo-architecture. Our approach supports a segregation of the pigeon's arcopallium/amygdala complex into the following subregions: the arcopallium anterius (AA), the arcopallium ventrale (AV), the arcopallium dorsale (AD), the arcopallium intermedium (AI), the arcopallium mediale (AM), the arcopallium posterius (AP), the nucleus posterioris amygdalopallii pars basalis (PoAb) and pars compacta (PoAc), the nucleus taeniae amgygdalae (TnA) and the area subpallialis amygdalae (SpA). Some of these subregions showed further subnuclei and each region of the arcopallium/amygdala complex are characterized by a distinct multi-receptor density expression. Here we provide a new detailed map of the pigeon's arcopallium/amygdala complex and compare the receptor architecture of the subregions to their possible mammalian counterparts. © 2017 Wiley Periodicals, Inc.

  4. Good for sewage treatment and good for agriculture: Algal based compost and biochar.

    Science.gov (United States)

    Cole, Andrew J; Paul, Nicholas A; de Nys, Rocky; Roberts, David A

    2017-09-15

    In this study we test a novel approach to closing the anthropogenic nutrient cycle, by using the freshwater macroalga, Oedogonium intermedium, to recover dissolved nitrogen (N) and phosphorous (P) from municipal wastewater. We then convert this cultivated algae into two types of soil ameliorant; compost and biochar. To produce compost, algae was combined with sugarcane bagasse and left to mature for 10 weeks, and to produce biochar, algae was processed through slow pyrolysis at 450 °C. The mature compost had a total N and P content of 2.5% and 0.6%, which was 2- to 4-times lower than the algal biochar, which had a total N and P content of 5.5% and 2.5% respectively. Composting stabilized the N and P recovered from wastewater, with 80% of the initial N and >99% of the initial P retained in the mature compost. In contrast, only 29% of the initial N and 62% of the initial P was retained in the biochar. When the mature compost was added to a low fertility soil it significantly increased the production of sweet corn (Zea mays). Treatments receiving 50 and 100% compost produced 4-9 times more corn biomass than when synthetic fertilizer alone was added to the low fertility soil. When biochar was applied in conjunction with compost there was an additional 15% increase in corn productivity, most likely due to the ability of the biochar to bind labile N and P and prevent its loss from the soil. This study demonstrates a unique model for recovering N and P from municipal wastewater and recycling these nutrients into the agricultural industry. This could be an ideal model for regional areas where agriculture and water treatment facilities are co-located and could ultimately reduce the reliance of agriculture on finite mineral sources of P. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. Prevalence, Host Range, and Comparative Genomic Analysis of Temperate Ochrobactrum Phages

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    Claudia Jäckel

    2017-06-01

    Full Text Available Ochrobactrum and Brucella are closely related bacteria that populate different habitats and differ in their pathogenic properties. Only little is known about mobile genetic elements in these genera which might be important for survival and virulence. Previous studies on Brucella lysogeny indicated that active phages are rare in this genus. To gain insight into the presence and nature of prophages in Ochrobactrum, temperate phages were isolated from various species and characterized in detail. In silico analyses disclosed numerous prophages in published Ochrobactrum genomes. Induction experiments showed that Ochrobactrum prophages can be induced by various stress factors and that some strains released phage particles even under non-induced conditions. Sixty percent of lysates prepared from 125 strains revealed lytic activity. The host range and DNA similarities of 19 phages belonging to the families Myoviridae, Siphoviridae, or Podoviridae were determined suggesting that they are highly diverse. Some phages showed relationship to the temperate Brucella inopinata phage BiPB01. The genomic sequences of the myovirus POA1180 (41,655 bp and podovirus POI1126 (60,065 bp were analyzed. Phage POA1180 is very similar to a prophage recently identified in a Brucella strain isolated from an exotic frog. The POA1180 genome contains genes which may confer resistance to chromate and the ability to take up sulfate. Phage POI1126 is related to podoviruses of Sinorhizobium meliloti (PCB5, Erwinia pyrifoliae (Pep14, and Burkholderia cenocepacia (BcepIL02 and almost identical to an unnamed plasmid of the Ochrobactrum intermedium strain LMG 3301. Further experiments revealed that the POI1126 prophage indeed replicates as an extrachromosomal element. The data demonstrate for the first time that active prophages are common in Ochrobactrum and suggest that atypical brucellae also may be a reservoir for temperate phages.

  6. Capítulo VI: evaluación de la resistencia al pasador del fruto de tomate Neoleucinodes elegantalis (Gueneé en materiales L. hirsutum Humb y Bonpl y L. pimpinellifolium (Just mill y su transferencia a materiales cultivados de tomate L. esculentum Mill

    Directory of Open Access Journals (Sweden)

    Salinas Helbert

    1994-12-01

    Full Text Available

    La investigación tuvo como objetivo estudiar el ciclo de vida del pasador  del fruto del tomate, N. elegantalis y evaluar la resistencia genética en diferentes accesiones de Lycopersicon y en poblaciones derivadas de cruzamientos interespecíficos entre L. esculentum, L. pimpinellifolium y L. hirsutum. La evaluación se realizó en condiciones de campo, utilizando un diseño de bloques completos al azar, con cuatro repeticiones. Se midieron los siguientes caracteres: estados del ciclo de vida, número de posturas, cantidad de frutos dañados, número de perforaciones de entrada, número de larvas por fruto e intensidad del daño. Se determinó el ciclo de vida del insecto plaga. Las especies silvestres fueron calificadas como muy resistentes o resistentes. Las variedades comerciales fueron calificadas como susceptible o medianamente susceptibles. Las poblaciones segregantes provenientes de los cruzamientos interespecíficos fueron calificados como resistentes o ligeramente susceptibles, indicando la posibilidad de introgresión genética de la resistencia. El insecto plaga  tiene mayor preferencia por fenotipos con frutos de mayor peso promedio y pericarpio duro.

    The research was carried out to study the life cicle of N. elegantalis, and the identification of resistence to the insect among Lycopersicon accessions and derivated populations from crossing between L. esculentum, L. pimpinellifolium and L. hirsutum. The life cicle of N. elegantalis was determinated. The wild species L. hirsutum and L. pimpinellifolium were very resistant and resistant, respectively. The Lycopersicon cultivars were susceptibles and derivated populationes from interspecific crossing were resistant or intermedium susceptible. There were associations between the fruit size, fruit firmness, fruit weight and susceptible expression in the plants from crossing between L. hirsutum, L. pimpinellifolium and commercial cultivars.

  7. A survey of entomopathogenic nematode species in continental Portugal.

    Science.gov (United States)

    Valadas, V; Laranjo, M; Mota, M; Oliveira, S

    2014-09-01

    Entomopathogenic nematodes (EPN) are lethal parasites of insects, used as biocontrol agents. The objectives of this work were to survey the presence of EPN in continental Portugal and to characterize the different species. Of the 791 soil samples collected throughout continental Portugal, 53 were positive for EPN. Steinernema feltiae and Heterorhabditis bacteriophora were the two most abundant species. Analysis of EPN geographical distribution revealed an association between nematode species and vegetation type. Heterorhabditis bacteriophora was mostly found in the Alentejo region while S. feltiae was present in land occupied by agriculture with natural vegetation, broadleaved forest, mixed forest and transitional woodland-shrub, agro-forestry areas, complex cultivated patterns and non-irrigated arable land. Although no clear association was found between species and soil type, S. feltiae was typically recovered from cambisols and H. bacteriophora was more abundant in lithosols. Sequencing of the internal transcribed spacer (ITS) region indicated that S. feltiae was the most abundant species, followed by H. bacteriophora. Steinernema intermedium and S. kraussei were each isolated from one site and Steinernema sp. from two sites. Phylogenetic analyses of ITS, D2D3 expansion region of the 28S rRNA gene, as well as mitochondrial cytochrome c oxidase subunit I (COXI) and cytochrome b (cytb) genes, was performed to evaluate the genetic diversity of S. feltiae and H. bacteriophora. No significant genetic diversity was found among H. bacteriophora isolates. However, COXI seems to be the best marker to study genetic diversity of S. feltiae. This survey contributes to the understanding of EPN distribution in Europe.

  8. Conservation systematics of the shield-backed trapdoor spiders of the nigrum-group (Mygalomorphae, Idiopidae, Idiosoma): integrative taxonomy reveals a diverse and threatened fauna from south-western Australia

    Science.gov (United States)

    Rix, Michael G.; Huey, Joel A.; Cooper, Steven J.B.; Austin, Andrew D.; Harvey, Mark S.

    2018-01-01

    Abstract The aganippine shield-backed trapdoor spiders of the monophyletic nigrum-group of Idiosoma Ausserer s. l. are revised, and 15 new species are described from Western Australia and the Eyre Peninsula of South Australia: I. arenaceum Rix & Harvey, sp. n., I. corrugatum Rix & Harvey, sp. n., I. clypeatum Rix & Harvey, sp. n., I. dandaragan Rix & Harvey, sp. n., I. formosum Rix & Harvey, sp. n., I. gardneri Rix & Harvey, sp. n., I. gutharuka Rix & Harvey, sp. n., I. incomptum Rix & Harvey, sp. n., I. intermedium Rix & Harvey, sp. n., I. jarrah Rix & Harvey, sp. n., I. kopejtkaorum Rix & Harvey, sp. n., I. kwongan Rix & Harvey, sp. n., I. mcclementsorum Rix & Harvey, sp. n., I. mcnamarai Rix & Harvey, sp. n., and I. schoknechtorum Rix & Harvey, sp. n. Two previously described species from south-western Western Australia, I. nigrum Main, 1952 and I. sigillatum (O. P.-Cambridge, 1870), are re-illustrated and re-diagnosed, and complementary molecular data for 14 species and seven genes are analysed with Bayesian methods. Members of the nigrum-group are of long-standing conservation significance, and I. nigrum is the only spider in Australia to be afforded threatened species status under both State and Commonwealth legislation. Two other species, I. formosum Rix & Harvey, sp. n. and I. kopejtkaorum Rix & Harvey, sp. n., are also formally listed as Endangered under Western Australian State legislation. Here we significantly relimit I. nigrum to include only those populations from the central and central-western Wheatbelt bioregion, and further document the known diversity and conservation status of all known species. PMID:29773959

  9. Corticothalamic and corticotectal somatosensory projections from the anterior ectosylvian sulcus (SIV cortex) in neonatal cats: an anatomical demonstration with HRP and 3H-leucine

    International Nuclear Information System (INIS)

    McHaffie, J.G.; Kruger, L.; Clemo, H.R.; Stein, B.E.

    1988-01-01

    Corticothalamic and corticotectal projections from the anterior ectosylvian sulcus (AES) in neonatal cats were studied with anterograde and retrograde neuroanatomical techniques. When the injection site was relatively restricted to the sulcal walls and fundus of the rostral AES (i.e., the SIV cortex), heavy ipsilateral thalamic label was observed in the medial subdivision of the posterior group, in the suprageniculate nucleus, and in the external medullary lamina. No terminal label was seen in the contralateral thalamus although the contralateral homotopic cortex was heavily labeled. Within the ventrobasal complex (VB), dense axonal label was observed in fascicles that traversed VB, but only light terminal label was observed within VB itself. However, in cases where the tracer spread into adjacent SII, terminal label in VB was pronounced. Similarly, when the injection site extended into auditory cortex, terminal label was observed in the lateral and intermediate subdivisions of the posterior group. Rostral AES injections produced distinct, predominantly ipsilateral, terminal label in the superior colliculus that was distributed in two tiers: a discontinuous band in the stratum griseum intermedium and a more diffuse band in stratum griseum profundum. Caudally, dense terminal label was seen in the intercollicular zone and dorsolateral periaqueductal gray. When the injection site did not include rostral AES, no label was observed in the superior colliculus. Horseradish peroxidase injections into the superior colliculus of neonates produced retrogradely labeled neurons throughout the AES, but none was found on the crown of the gyrus where SII is located. Thus, the neonatal corticotectal somatosensory projection arises exclusively from AES and parallels that found in adults

  10. The Effects of Irradiation and Calcium-deficient Diet on the Expression of Bone Morphogenetic Protein-2/4 during Early Tooth Development

    International Nuclear Information System (INIS)

    Park, Dai Hee; Hwang, Eui Hwan; Lee, Sang Rae

    2000-01-01

    To investigate the expression of bone morphogenetic protein (BMP)-2/4 during early tooth development after irradiation and calcium-deficient diet. The pregnant three-week-old Sprague-Dawley rats were used for the study. The control group was non-irradiation/normal diet group (Group 1), and the experimental groups were irradiation/normal diet group (Group 2) and irradiation/calcium-diet group (Group 3). The abdomen of the rats at the 9th day of pregnancy were irradiated with single dose of 350 cGy. The rat pups were sacrificed at embryonic 18 days, 3 days and 14 days after delivery and the maxillae tooth germs were taken. The tissue sections of specimen were stained immunohistochemically with anti-BMP-2/4 antibody. At embryo-18 days, immunoreacivity for BMP-2/4 of the Group 1 was modetate in stratum intermedium of dental organ and weak in dental papilla and dental follicle, but that of Group 2 was weak in cell layer of dental organ, and no immunoreacivity was shown in dental papilla and dental follice of Group 2 and in all tissue components of the Group 3. At postnatal-3 days, immunoreacivity for BMP-2/4 of the Group 1 was strong in cell layer of dental organ, odontoblasts and developing alveolar bone, but that of Group of 2 and Group 3 was weak in odontoblasts and developing alveolar bone. At postnatal-14 days, immunoreacivity for BMP-2/4 of the Group 1 was strong in newly formed cementum, alveolar bone and odontoblasts, but that of Group 2 was weaker than that of Group 1. In the Group 3, tooth forming cell layer showed weak immunoreactivity, but other cell layers showed no immunoreactivity. The expression of bone morphogenetic protein (BMP)-2/4 during early tooth development was disturbed after irradiation and calcium-deficient diet.

  11. The Effects of Irradiation and Calcium-deficient Diet on the Expression of Bone Morphogenetic Protein-2/4 during Early Tooth Development

    Energy Technology Data Exchange (ETDEWEB)

    Park, Dai Hee; Hwang, Eui Hwan; Lee, Sang Rae [Dept. of Oral and Maxillofacial Radiology, College of Dentistry, Kyunghee University, Seoul (Korea, Republic of)

    2000-09-15

    To investigate the expression of bone morphogenetic protein (BMP)-2/4 during early tooth development after irradiation and calcium-deficient diet. The pregnant three-week-old Sprague-Dawley rats were used for the study. The control group was non-irradiation/normal diet group (Group 1), and the experimental groups were irradiation/normal diet group (Group 2) and irradiation/calcium-diet group (Group 3). The abdomen of the rats at the 9th day of pregnancy were irradiated with single dose of 350 cGy. The rat pups were sacrificed at embryonic 18 days, 3 days and 14 days after delivery and the maxillae tooth germs were taken. The tissue sections of specimen were stained immunohistochemically with anti-BMP-2/4 antibody. At embryo-18 days, immunoreacivity for BMP-2/4 of the Group 1 was modetate in stratum intermedium of dental organ and weak in dental papilla and dental follicle, but that of Group 2 was weak in cell layer of dental organ, and no immunoreacivity was shown in dental papilla and dental follice of Group 2 and in all tissue components of the Group 3. At postnatal-3 days, immunoreacivity for BMP-2/4 of the Group 1 was strong in cell layer of dental organ, odontoblasts and developing alveolar bone, but that of Group of 2 and Group 3 was weak in odontoblasts and developing alveolar bone. At postnatal-14 days, immunoreacivity for BMP-2/4 of the Group 1 was strong in newly formed cementum, alveolar bone and odontoblasts, but that of Group 2 was weaker than that of Group 1. In the Group 3, tooth forming cell layer showed weak immunoreactivity, but other cell layers showed no immunoreactivity. The expression of bone morphogenetic protein (BMP)-2/4 during early tooth development was disturbed after irradiation and calcium-deficient diet.

  12. Intraspecific ecological niche divergence and reproductive shifts foster cytotype displacement and provide ecological opportunity to polyploids.

    Science.gov (United States)

    Karunarathne, Piyal; Schedler, Mara; Martínez, Eric J; Honfi, Ana I; Novichkova, Anastasiia; Hojsgaard, Diego

    2018-05-11

    Niche divergence between polyploids and their lower ploidy progenitors is one of the primary mechanisms fostering polyploid establishment and adaptive divergence. However, within-species chromosomal and reproductive variability have usually been neglected in community ecology and biodiversity analyses even though they have been recognized to play a role in the adaptive diversification of lineages. We used Paspalum intermedium, a grass species with diverging genetic systems (diploidy vs. autopolyploidy, allogamy vs. autogamy and sexuality vs. apomixis), to recognize the causality of biogeographic patterns, adaptation and ecological flexibility of cytotypes. Chromosome counts and flow cytometry were used to characterize within-species genetic systems diversity. Environmental niche modelling was used to evaluate intraspecific ecological attributes associated with environmental and climatic factors and to assess correlations among ploidy, reproductive modes and ecological conditions ruling species' population dynamics, range expansion, adaptation and evolutionary history. Two dominant cytotypes non-randomly distributed along local and regional geographical scales displayed niche differentiation, a directional shift in niche optima and signs of disruptive selection on ploidy-related ecological aptitudes for the exploitation of environmental resources. Ecologically specialized allogamous sexual diploids were found in northern areas associated with higher temperature, humidity and productivity, while generalist autogamous apomictic tetraploids occurred in southern areas, occupying colder and less productive environments. Four localities with a documented shift in ploidy and four mixed populations in a zone of ecological transition revealed an uneven replacement between cytotypes. Polyploidy and contrasting reproductive traits between cytotypes have promoted shifts in niche optima, and increased ecological tolerance and niche divergence. Ecologically specialized diploids

  13. Intravesicular Phosphatase PHOSPHO1 Function in Enamel Mineralization and Prism Formation

    Directory of Open Access Journals (Sweden)

    Mirali Pandya

    2017-10-01

    Full Text Available The transport of mineral ions from the enamel organ-associated blood vessels to the developing enamel crystals involves complex cargo packaging and carriage mechanisms across several cell layers, including the ameloblast layer and the stratum intermedium. Previous studies have established PHOSPHO1 as a matrix vesicle membrane-associated phosphatase that interacts with matrix vesicles molecules phosphoethanolamine and phosphocholine to initiate apatite crystal formation inside of matrix vesicles in bone. In the present study, we sought to determine the function of Phospho1 during amelogenesis. PHOSPHO1 protein localization during amelogenesis was verified using immunohistochemistry, with positive signals in the enamel layer, ameloblast Tomes' processes, and in the walls of ameloblast secretory vesicles. These ameloblast secretory vesicle walls were also labeled for amelogenin and the exosomal protein marker HSP70 using immunohistochemistry. Furthermore, PHOSPHO1 presence in the enamel organ was confirmed by Western blot. Phospho1−/− mice lacked sharp incisal tips, featured a significant 25% increase in total enamel volume, and demonstrated a significant 2-fold reduction in silver grain density of von Kossa stained ground sections indicative of reduced mineralization in the enamel layer when compared to wild-type mice (p < 0.001. Scanning electron micrographs of Phospho1−/− mouse enamel revealed a loss of the prominent enamel prism “picket fence” structure, a loss of parallel crystal organization within prisms, and a 1.56-fold increase in enamel prism width (p < 0.0001. Finally, EDS elemental analysis demonstrated a significant decrease in phosphate incorporation in the enamel layer when compared to controls (p < 0.05. Together, these data establish that the matrix vesicle membrane-associated phosphatase PHOSPHO1 is essential for physiological enamel mineralization. Our findings also suggest that intracellular ameloblast secretory

  14. Possibilities of urolithiasis crystallodiagnostics

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    A.K. Martusevich

    2017-06-01

    Full Text Available Nowadays, one of the most common groups of diseases in veterinary medicine is the urinary system pathology. Urolithiasis is widespread disease, could be found in many species, including cats, dogs, rabbits, guinea-pigs, turtles etc. Despite the large scale of this pathology in animal world, there are some challenges with diagnostic process and diagnosis’s verification. The aim of our study is estimation of diagnostic value of advanced urine tesiocrystalloscopy in urolithiasis (by the example of cats. We studied crystallogenic and initiated properties of 24 healthy cats and 32 animals with urolithiasis. Own and initiated crystallogenesis of the urine specimens was studied. For teziographic test we used sodium chloride solution (0.45%, 0.9%, 3% consequently, hydrochloric acid solution (0.1H and sodium hydroxide (0.1H as a crystal-forming substances. We used the original criterions to estimate crystalloscopic and tezigraphic facias. As the main parameters structure index (SI, crystallizability (Cr, facia's destruction degree (FDD and edge belt intensity (EB were used to describe free crystallogenesis, and main tezigraphic coefficient (Q, belt coefficient (B and FDD were used for the comparative tezigraphy data. Results showed that Cat’s urine in normal conditions has moderate crystallogenic activity, but in urolithiasis it acquires high level of crystallizing, with intermedium value of structure index, and significant destruction of crystal-forming elements. A similar changes of physical-chemical biomedium properties are detected during analysis of tezigraphic microslides of urines of cats with urolithiasis, that was prepared using 0.9% sodium chloride as basis substance. In conclusion, we fixed that tesiocristalloscopic „pattern“ of cats’ urine in urolithiasis significantly transforms into activation of crystal formation and increasing of biomedium’s initiating potential. So, the investigation of free or initialized urine

  15. Transcriptional Activities of the Microbial Consortium Living with the Marine Nitrogen-Fixing Cyanobacterium Trichodesmium Reveal Potential Roles in Community-Level Nitrogen Cycling.

    Science.gov (United States)

    Lee, Michael D; Webb, Eric A; Walworth, Nathan G; Fu, Fei-Xue; Held, Noelle A; Saito, Mak A; Hutchins, David A

    2018-01-01

    form large macroscopic colonies that appear to perpetually host an association of diverse interacting microbes distinct from the surrounding seawater, potentially making the entire assemblage a unique miniature ecosystem. Since its first successful cultivation in the early 1990s, there have been questions about the potential interdependencies between Trichodesmium and its associated microbial community and whether the host's seemingly enigmatic nitrogen fixation schema somehow involved or benefited from its epibionts. Here, we revisit these old questions with new technology and investigate gene expression activities of microbial communities living in association with Trichodesmium . Copyright © 2017 American Society for Microbiology.

  16. Sponge epizoism in the Caribbean and the discovery of new Plakortis and Haliclona species, and polymorphism of Xestospongia deweerdtae (Porifera).

    Science.gov (United States)

    Vicente, Jan; Zea, Sven; Hill, Russell T

    2016-10-24

    The new discovery by Vicente et al. (2014) of specialized epizoic symbioses between sponges of the genera Plakortis and Xestospongia revealed the obligate interaction of two new Plakortis spp. associating with Xestospongia deweerdtae and a new Xestospongia sp. In this study we formally describe the two new Plakortis spp. as Plakortis deweerdtaephila sp. nov. (previously reported as Plakortis sp. 1), Plakortis symbiotica sp. nov. (previously reported as Plakortis sp. 2) and describe the new Xestospongia sp. epibiont as Haliclona (Halichoclona) plakophila sp. nov.  Plakortis deweerdtaephila associates only with X. deweerdtae, and has very small to large straight diods (24.2-233.7 μm long) and triods (26.4-102.6 μm long) that form large ectosomal circular meshes (114-329 μm diameter). P. symbiotica associates with both X. deweerdtae and H. plakophila, has larger curved diods (71.9-141.8 μm long) and triods (20.4-70.6 μm long) that form smaller ectosomal circular meshes (43-121 μm diameter) than P. deweerdtaephila. Phylogenetic analysis of cox1 and cob gene fragments revealed a strongly supported clade that grouped both Plakortis spp. nov. distantly from any other known Plakortis spp. H. plakophila is described as a thin encrusting veneer of tissue with occasional papillae, so far only found associated with P. symbiotica in La Parguera, Puerto Rico. Phylogenetic analysis of 18S rRNA and cox1 gene fragments place it distantly from any known clade of Haplosclerida. We found a new associated morphotype of X. deweerdtae from Bocas del Toro Panama, which completely overgrew P. deweerdtaephila. In addition, free-living morphotypes from Panama produce larger S-shaped and round bracket shaped strongyles never before observed for this species, leading us to redescribe X. deweerdtae. All X. deweerdtae morphotypes shared >99% sequence homology of cox1, 18S rRNA and 28S rRNA genes with the holotype of X. deweerdtae. This study highlights the highly variable morphological

  17. Visualizing Single Cell Biology: Nanosims Studies of Carbon and Nitrogen Metabolism in Diazotrophic Cyanobacteria

    Science.gov (United States)

    Pett-Ridge, J.; Finzi, J. A.; Capone, D. G.; Popa, R.; Nealson, K. H.; Ng, W.; Spormann, A. M.; Hutcheon, I. D.; Weber, P. K.

    2007-12-01

    , inter-species transfers (with Rhizobium epibionts), and within-cell depth profiles. Spatial enrichment patterns were correlated with morphological features evidenced in TEM images of microtomed filaments. These features indicate how 15N and 13C "hotspots" are dispersed throughout individual cells in different species, and may indicate isolated locations of increased N2 fixation, sites of amino acid/protein synthesis, or cyanophycin storage granules. This combination of Nano-Secondary Ion Mass Spectrometry (NanoSIMS) analysis and high resolution microscopy allows isotopic analysis to be linked to morphological features and holds great promise for fine-scale studies of bacteria metabolism.

  18. Deep Sea Shell Taphonomy: Interactive benthic experiments in hydrate environments of Barkley Canyon, Ocean Networks Canada.

    Science.gov (United States)

    Best, Mairi; Purser, Autun

    2015-04-01

    from the mound. On retrieval, the specimens are being further studied for net material loss, surface alteration, microbial recruitment, endo- and epibionts, and microstructural and chemical modification. Understanding the production and cycling of carbon across the sediment/water interface in this environment will help elucidate the formation and evolution of these hydrate deposits, their distribution through time, and the ecological and taphonomic feedbacks they generate.

  19. The evolution of the manus of early theropod dinosaurs is characterized by high inter- and intraspecific variation.

    Science.gov (United States)

    Barta, Daniel E; Nesbitt, Sterling J; Norell, Mark A

    2018-01-01

    The origin of the avian hand, with its reduced and fused carpals and digits, from the five-fingered hands and complex wrists of early dinosaurs represents one of the major transformations of manus morphology among tetrapods. Much attention has been directed to the later part of this transition, from four- to three-fingered taxa. However, earlier anatomical changes may have influenced these later modifications, possibly paving the way for a later frameshift in digit identities. We investigate the five- to four-fingered transition among early dinosaurs, along with changes in carpus morphology. New three-dimensional reconstructions from computed tomography data of the manus of the Triassic and Early Jurassic theropod dinosaurs Coelophysis bauri and Megapnosaurus rhodesiensis are described and compared intra- and interspecifically. Several novel findings emerge from these reconstructions and comparisons, including the first evidence of an ossified centrale and a free intermedium in some C. bauri specimens, as well as confirmation of the presence of a vestigial fifth metacarpal in this taxon. Additionally, a specimen of C. bauri and an unnamed coelophysoid from the Upper Triassic Hayden Quarry, New Mexico, are to our knowledge the only theropods (other than alvarezsaurs and birds) in which all of the distal carpals are completely fused together into a single unit. Several differences between the manus of C. bauri and M. rhodesiensis are also identified. We review the evolution of the archosauromorph manus more broadly in light of these new data, and caution against incorporating carpal characters in phylogenetic analyses of fine-scale relationships of Archosauromorpha, in light of the high degree of observed polymorphism in taxa for which large sample sizes are available, such as the theropod Coelophysis and the sauropodomorph Plateosaurus. We also find that the reduction of the carpus and ultimate loss of the fourth and fifth digits among early dinosaurs did not

  20. MMP20 Overexpression Disrupts Molar Ameloblast Polarity and Migration.

    Science.gov (United States)

    Shin, M; Chavez, M B; Ikeda, A; Foster, B L; Bartlett, J D

    2018-02-01

    Ameloblasts responsible for enamel formation express matrix metalloproteinase 20 (MMP20), an enzyme that cleaves enamel matrix proteins, including amelogenin (AMELX) and ameloblastin (AMBN). Previously, we showed that continuously erupting incisors from transgenic mice overexpressing active MMP20 had a massive cell infiltrate present within their enamel space, leading to enamel mineralization defects. However, effects of MMP20 overexpression on mouse molars were not analyzed, although these teeth more accurately represent human odontogenesis. Therefore, MMP20-overexpressing mice ( Mmp20 +/+ Tg + ) were assessed by multiscale analyses, combining several approaches from high-resolution micro-computed tomography to enamel organ immunoblots. During the secretory stage at postnatal day 6 (P6), Mmp20 +/+ Tg + mice had a discontinuous ameloblast layer and, unlike incisors, molar P12 maturation stage ameloblasts abnormally migrated away from the enamel layer into the stratum intermedium/stellate reticulum. TOPflash assays performed in vitro demonstrated that MMP20 expression promoted β-catenin nuclear localization and that MMP20 expression promoted invasion through Matrigel-coated filters. However, for both assays, significant differences were eliminated in the presence of the β-catenin inhibitor ICG-001. This suggests that MMP20 activity promotes cell migration via the Wnt pathway. In vivo, the unique molar migration of amelogenin-expressing ameloblasts was associated with abnormal deposition of ectopic calcified nodules surrounding the adherent enamel layer. Enamel content was assessed just prior to eruption at P15. Compared to wild-type, Mmp20 +/+ Tg + molars exhibited significant reductions in enamel thickness (70%), volume (60%), and mineral density (40%), and MMP20 overexpression resulted in premature cleavage of AMBN, which likely contributed to the severe defects in enamel mineralization. In addition, Mmp20 +/+ Tg + mouse molar enamel organs had increased levels

  1. Determination of Mineral Contents of Some Legume and Cereal Forages Grown as Naturally in Pastures of Erzurum Province

    Directory of Open Access Journals (Sweden)

    Esra GÜRSOY

    2017-06-01

    Full Text Available This study was carried out to determine the mineral substances such as macro and micro minerals of legume and cereal forages grown as naturally in the pastures of Erzurum province. In present study, clover, (Medicago sativa, mountain hispanic sainfoin (Hedysarum elegans, bird vetch (Vicia cracca, hairy vetch (Vicia villosa, mountain vetch (Vicia alpestris, mountain clover (Trifolium montanum, caucasian clover (Trifolium ambiguum, the three-headed clover (Trifolium trichocephalum, tawny grass crown (Coronilla varia, the crown of the eastern horn of grass (Coronilla orientatis and yellow flowers gazelle (Lotus corniculatus from legume forages; cocksfoot (Dactylis glomerata, crested wheatgrass (Agropyron cristatum, red fescue (Festuca rubra, sheep ball (Festuca ovina, tawny bromine (Bromus variegatus, blue split (Agropyron intermedium, kelp tail grass (Phleum pratense, meadow bluegrass (Poa pratensis from cereal forages were investigated. The obtained data were subjected to an analysis of variance by using SPSS 12.0 package program. Significant differences between means were tested by using Duncan’s Multiple Range Test. Macro minerals such as Nitrogen (N, Phosphorus (P, Potassium (K, Calcium (Ca, Magnesium (Mg and Sulfur (S assigned for legume forages changed between 2.39- 3.30%, 1.16-1.28%, 0.70-2.69%, 0.56-1.61%, 0.11-0.51% and 0.16-0.27%, respectively. The amounts of micro mineral like Iron (Fe, Virgin (Cu, Zinc (Zn, Manganese (Mn and Boron (B of legume forages were determined to be 105.9-893.7 ppm, 2.22-12.36 ppm, 14.11-195 ppm, 18.18-66.58 ppm and 5.91-40.39 ppm, respectively. Instances of macro minerals of cereal forages were found for N 1.76-of 2.19%, P 1.10-1.19%, K 1.99-3.25%, Ca 0.09-1.15%, Mg 0.07-0.26% and S 0.22-0.36% in present study. Micro minerals such as Fe, Cu, Zn, Mn and B determined for cereal forages changed between 74.90-630.6 ppm, 4-9.84 ppm, 31.49-335.6 ppm, 24.63-94.51 ppm and 0.35-26.64 ppm, respectively. In conclusion

  2. Automotive friction value estimation between tire and roadway; Automotive Reibwertprognose zwischen Reifen und Fahrbahn

    Energy Technology Data Exchange (ETDEWEB)

    Trabelsi, A.

    2005-07-01

    In this work methodical approaches to predict the friction value as a driver warning information or as a preconditioning of vehicle control systems are presented. The focus of this work is the description and classification of the road state with the help of a multi sensor concept. Additionally to the use of standard vehicle sensors different additional optical and acoustic sensors have been analysed. These sensors allow an automatic detection of the road state before critical driving situations are reached and give a help for the driver to guess the actual friction state. The use of information about the road brightness and brilliance leads to the detection of the inter-medium on the road. This can be supported by a model-based correction of the influence of the sensor height. The tire-road noise can also be used to describe the road state and detect water and show on the road. An appropriate image processing algorithm leads to the detection of road wetness and lane grooves from a cut out of images of a lane keeping camera. Furthermore the examination of the road texture with the help of a laser profilometer helps getting a better understanding of the contact problems between tyre and road. A 3-dimensional presentation of the road roughness can be connected to a 3D-contact model to describe the contact surface and the force partition in the foot print. In addition, the approach of a model-based detection of slippery road conditions mainly with the help of ESP sensors will be presented. This model is based on the calculation of the form slip part with a statically approximated multi-field and the sequentially detected sliding slip on low-{mu} road surfaces. With this approach it is possible to detect slippery wet roads, aquaplaning situations, ice and snow considering the application conditions. The connection of the different sensor data follows in a road state estimation block with an extended Sugeno-Fuzzy expert system. By the definition of a 3-stage signal

  3. Uptake of americium-241 by plants from contaminated Chernobyl exclusive zone test site soils

    International Nuclear Information System (INIS)

    Rashydov, N.M.

    2002-01-01

    Americium-241 was found to accumulate in soils and biological objects of the environment. Its concentration has increased many times after the Chernobyl disaster and can be expected to increase about 40 times in the future. This research concentrated on the contaminated exclusive Chernobyl zone polluted by trace radionuclides, their behavior and accumulation by various plant species. Special attention is devoted to the bioavailability of 241 Am to the plants Galium rivale, G. tinctorium, G. aparine, G. intermedium, Berteroa incana, Artemisia absinthium, A. vulgaris, Centaurea borysthenica, C. arenaria, Cirsium arvense, Succissa pratensis, Solidago virgaurea, Linaria vulgaris, Lepidium ruderale, Stenactis annua, Veronica maxima, Verbascum lychnitis, Euphorbia cyparissias, Genista tinctoria, Erigeron canadensis, Oenothera biennis, Betula pendula and Quercus robur, which were collected from the Chernobyl, Kopachi, and Yanov districts. The plant samples of Oenothera biennis, Betula pendula and Quercus robur were collected from the Yanov district, where the soil contamination by 241 Am and 137 Cs was at the level of 660 and 27 MBq/m 2 , respectively. Gamma spectroscopy and radiochemical methods were used to estimate the activity concentration of 137 Cs, 90 Sr, 238 Pu, 239+240 Pu, 241 Am. The radionuclides were measured in the dry green mass of the plant samples and in the dry soils. The contamination of the Oenothera biennis, Betula pendula and Quercus robur samples by 137 Cs was (5.8±1,5)x10 6 , (7.4±1.1)x10 5 , and (2.6±0.2)x10 6 Bq/kg dry mass, respectively, and contamination by 241 Am was 47±5, 45±3 and 3.2±0.2 Bq/kg, respectively. The soil-to-plant transfer ratio for 137 Cs ranged lay within the interval of 0.2 to 0.03 Bq/kg : Bq/m 2 , the the transfer ratio for 241 Am did not exceed 7x10 -5 Bq/kg : Bq/m 2 . The coefficient of the relative contents of the 241 Am/ 239+240 Pu radionuclides in the various plant samples varied from 3.2 to 8.3, while for soil from

  4. Gravity-induced buds formation from protonemata apical cells in the mosses

    Science.gov (United States)

    Kyyak, Natalia; Khorkavtsiv, Yaroslava

    The acceleration of moss protonemata development after the exit it to light from darkness is important gravidependent morphogenetic manifestation of the moss protonemata. The accelerated development of mosses shows in transformation of apical protonemata cells into the gametophores buds (Ripetskyj et al., 1999). In order to establish, that such reaction on gravitation is general property of gravisensity species, or its typical only for single moss species, experiments with the following moss species - Bryum intermedium (Ludw.) Brig., Bryum caespiticium Hedw., Bryum argenteum Hedw., Dicranodontium denudatum (Brid.) Britt. were carried out. All these species in response to influence of gravitation were capable to form rich bunches of gravitropical protonemata in darkness, that testified to their gravisensity. After the transference of Petri dishes with gravitropical protonemata from darkness on light was revealed, that in 3 of the investigated species the gametophores buds were absent. Only B. argenteum has reacted to action of gravitation by buds formation from apical cells of the gravitropical protonemata. With the purpose of strengthening of buds formation process, the experiments with action of exogenous kinetin (in concentration of 10 (-6) M) were carried out. Kinetin essentially stimulated apical buds formation of B. argenteum. The quantity of apical buds has increased almost in three times in comparison with the control. Besides, on separate stolons a few (3-4) buds from one apical cell were formed. Experimentally was established, that the gametophores buds formation in mosses is controlled by phytohormones (Bopp, 1985; Demkiv et al., 1991). In conditions of gravity influence its essentially accelerated. Probably, gravity essentially strengthened acropetal transport of phytohormones and formation of attractive center in the protonemata apical cell. Our investigations have allowed to make the conclusion, that gravi-dependent formation of the apical buds is

  5. Multiple Calcium Export Exchangers and Pumps Are a Prominent Feature of Enamel Organ Cells

    Science.gov (United States)

    Robertson, Sarah Y. T.; Wen, Xin; Yin, Kaifeng; Chen, Junjun; Smith, Charles E.; Paine, Michael L.

    2017-01-01

    Calcium export is a key function for the enamel organ during all stages of amelogenesis. Expression of a number of ATPase calcium transporting, plasma membrane genes (ATP2B1-4/PMCA1-4), solute carrier SLC8A genes (sodium/calcium exchanger or NCX1-3), and SLC24A gene family members (sodium/potassium/calcium exchanger or NCKX1-6) have been investigated in the developing enamel organ in earlier studies. This paper reviews the calcium export pathways that have been described and adds novel insights to the spatiotemporal expression patterns of PMCA1, PMCA4, and NCKX3 during amelogenesis. New data are presented to show the mRNA expression profiles for the four Atp2b1-4 gene family members (PMCA1-4) in secretory-stage and maturation-stage rat enamel organs. These data are compared to expression profiles for all Slc8a and Slc24a gene family members. PMCA1, PMCA4, and NCKX3 immunolocalization data is also presented. Gene expression profiles quantitated by real time PCR show that: (1) PMCA1, 3, and 4, and NCKX3 are most highly expressed during secretory-stage amelogenesis; (2) NCX1 and 3, and NCKX6 are expressed during secretory and maturation stages; (3) NCKX4 is most highly expressed during maturation-stage amelogenesis; and (4) expression levels of PMCA2, NCX2, NCKX1, NCKX2, and NCKX5 are negligible throughout amelogenesis. In the enamel organ PMCA1 localizes to the basolateral membrane of both secretory and maturation ameloblasts; PMCA4 expression is seen in the basolateral membrane of secretory and maturation ameloblasts, and also cells of the stratum intermedium and papillary layer; while NCKX3 expression is limited to Tomes' processes, and the apical membrane of maturation-stage ameloblasts. These new findings are discussed in the perspective of data already present in the literature, and highlight the multiplicity of calcium export systems in the enamel organ needed to regulate biomineralization. PMID:28588505

  6. Multiple Calcium Export Exchangers and Pumps Are a Prominent Feature of Enamel Organ Cells

    Directory of Open Access Journals (Sweden)

    Sarah Y. T. Robertson

    2017-05-01

    Full Text Available Calcium export is a key function for the enamel organ during all stages of amelogenesis. Expression of a number of ATPase calcium transporting, plasma membrane genes (ATP2B1-4/PMCA1-4, solute carrier SLC8A genes (sodium/calcium exchanger or NCX1-3, and SLC24A gene family members (sodium/potassium/calcium exchanger or NCKX1-6 have been investigated in the developing enamel organ in earlier studies. This paper reviews the calcium export pathways that have been described and adds novel insights to the spatiotemporal expression patterns of PMCA1, PMCA4, and NCKX3 during amelogenesis. New data are presented to show the mRNA expression profiles for the four Atp2b1-4 gene family members (PMCA1-4 in secretory-stage and maturation-stage rat enamel organs. These data are compared to expression profiles for all Slc8a and Slc24a gene family members. PMCA1, PMCA4, and NCKX3 immunolocalization data is also presented. Gene expression profiles quantitated by real time PCR show that: (1 PMCA1, 3, and 4, and NCKX3 are most highly expressed during secretory-stage amelogenesis; (2 NCX1 and 3, and NCKX6 are expressed during secretory and maturation stages; (3 NCKX4 is most highly expressed during maturation-stage amelogenesis; and (4 expression levels of PMCA2, NCX2, NCKX1, NCKX2, and NCKX5 are negligible throughout amelogenesis. In the enamel organ PMCA1 localizes to the basolateral membrane of both secretory and maturation ameloblasts; PMCA4 expression is seen in the basolateral membrane of secretory and maturation ameloblasts, and also cells of the stratum intermedium and papillary layer; while NCKX3 expression is limited to Tomes' processes, and the apical membrane of maturation-stage ameloblasts. These new findings are discussed in the perspective of data already present in the literature, and highlight the multiplicity of calcium export systems in the enamel organ needed to regulate biomineralization.

  7. Recyclable magnetic photocatalysts of Fe2+/TiO2 hierarchical architecture with effective removal of Cr(VI) under UV light from water

    International Nuclear Information System (INIS)

    Xu, S.C.; Zhang, Y.X.; Pan, S.S.; Ding, H.L.; Li, G.H.

    2011-01-01

    Highlights: ► Fe 2+ /TiO 2 catalyst has a three-level hierarchical architecture. ► With a removal effectiveness of 99.3% at Cr(VI) concentration of 10 mg L −1 . ► Two-step reduction: TiO 2 photoreduces Fe 2+ to Fe and Fe reduces Cr(VI) to Cr(III). ► Hierarchical architecture serves as both photocatalytic reactor and absorbent. ► Fe 2+ /TiO 2 catalyst can be magnetically separated from wastewater and recycled. - Abstract: We report the synthesis and photocatalytic removal of Cr(VI) from water of hierarchical micro/nanostructured Fe 2+ /TiO 2 tubes. The TiO 2 tubes fabricated by a facile solvothermal approach show a three-level hierarchical architecture assembled from dense nanosheets nearly vertically standing on the surface of TiO 2 microtube. The nanosheets with a thickness of about 20 nm are composed of numerous TiO 2 nanocrystals with size in the range of 15–20 nm. Ferrous ions are doped into the hierarchical architecture by a reduction route. The Fe 2+ /TiO 2 catalyst demonstrates an effective removal of Cr(VI) from water under UV light and the removal effectiveness reaches 99.3% at the initial Cr(VI) concentration of 10 mg L −1 . The ferrous ion in the catalyst serves not as the photo-electron trap but as an intermedium of a two-step reduction. The TiO 2 photoreduces the Fe 2+ ions to Fe atoms firstly, then the Fe atoms reduce the Cr(VI) to Cr(III), and the later is removed by adsorption. The hierarchical architecture of the catalyst serves as a reactor for the photocatalytic reaction of Cr(VI) ions and an effective absorbent for the removal of Cr(III) ions. The catalyst can be easily magnetically separated from the wastewater after photocatalytic reaction and recycled after acid treatment.

  8. Extended parental care in crustaceans: an update Cuidado parental extendido en crustáceos: conocimiento actual

    Directory of Open Access Journals (Sweden)

    MARTIN THIEL

    2003-06-01

    Full Text Available Many crustacean species show extended parental care (XPC for fully developed juvenile offspring. Herein, the present state of knowledge of the major patterns and consequences of XPC is reviewed, and furthermore important future research topics are identified. Crustaceans with XPC are found in marine, freshwater and terrestrial environments, but care for late juvenile stages appears to be more common in terrestrial environments. In all species, females participate or even take the main share of XPC activities. Crustaceans that carry their offspring during XPC commonly release early juvenile stages, while species inhabiting particular microhabitats may host offspring until these have reached subadult or adult stages. Apart from providing a suitable and safe microhabitat to small offspring, parents share food with, groom or actively defend their juveniles. Some of the most important benefits of XPC include improved juvenile growth and survival. XPC may also lead to conflicts among developing offspring or between parents and offspring, especially during later phases of XPC when resources (food and space become increasingly limiting. Similarly, during long-lasting cohabitation, epibionts (e.g., parasites may be transferred from parents to offspring, as is indicated by observational evidence. For several species, local recruitment, where juveniles recruit in the immediate vicinity of their parents, has been observed. Under these conditions, local populations may rapidly increase, potentially leading to intra-specific competition for space, thereby possibly causing a decrease in reproductive activity or a reduction in length of XPC. Another consequence of XPC and local recruitment could be limited dispersal potential, but some marine crustaceans with XPC and local recruitment nevertheless have a wide geographic distribution. It is hypothesized that the existence of suitable dispersal vectors such as floating macroalgae or wood can lead to a substantial

  9. Lower Cretaceous Puez key-section in the Dolomites - towards the mid-Cretaceous super-greenhouse

    Science.gov (United States)

    Lukeneder, A.; Halásová, E.; Rehákova, D.; Józsa, Š.; Soták, J.; Kroh, A.; Jovane, L.; Florindo, F.; Sprovieri, M.; Giorgioni, M.; Lukeneder, S.

    2012-04-01

    of Earth Sciences, 103/1, 138-158. Lukeneder A. 2008. The ecological significance of solitary coral and bivalve epibionts on Lower Cretaceous (Valanginian-Aptian) ammonoids from the Italian Dolomites. Acta Geologica Polonica, 58/4, 425-436. Lukeneder, A., Aspmair, C. 2006. Startigraphic implication of a new Lower Cretaceous ammonoid fauna from the Puez area (Valanginaian - Aptian, Dolomites, Southern Alps, Italy). Geo.Alp, 3, 55-91.

  10. TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1

    Directory of Open Access Journals (Sweden)

    Komatsuda Takao

    2009-12-01

    Full Text Available Abstract Background The economic importance of cereals such as barley, and the demand for improved yield and quality require a better understanding of the genetic components that modulate biologically and commercially relevant traits. While Arabidopsis thaliana is the premiere model plant system, the spectrum of its traits cannot address all of the fundamental questions of crop plant development. Unlike Arabidopsis, barley is both a crop and a model system for scientific research, and it is increasingly being used for genetic and molecular investigations into the conserved biological processes of cereals. A common challenge in genetic studies in plants with large genomes arises from the very time-consuming work of associating mutant phenotypes with gene sequence information, especially if insertion mutagenesis is not routine, as in barley. Reverse genetics based on chemical mutagenesis represents the best solution to this obstacle. Findings In barley, we generated a new TILLING (Targeting Local Lesions IN Genomes resource comprising 10,279 M2 mutants in the two-rowed malting cultivar 'Barke,' which has been used in the generation of other genomic resources in barley (~150,000 ESTs, DH mapping population. The value of this new resource was tested using selected candidate genes. An average frequency of approximately one mutation per 0.5 Mb was determined by screening ten fragments of six different genes. The ethyl methanesulphonate (EMSmutagenesis efficiency was studied by recording and relating the mutagenesis-dependent effects found in the three mutant generations (M1-M3. A detailed analysis was performed for the homeodomain-leucine-zipper (HD-ZIP gene HvHox1. Thirty-one mutations were identified by screening a 1,270-bp fragment in 7,348 M2 lines. Three of the newly identified mutants exhibited either a six-rowed or an intermedium-spike phenotype, and one mutant displayed a significantly altered spikelet morphology compared to that of the 'Barke

  11. New moss species with gravitropic protonemata

    Science.gov (United States)

    Lobachevska, O. V.

    pyriforme (65,7± 1,2); Bryum caespiticium (37,2± 1,7); B. argenteum (41,1± 4,3); B. intermedium (33,3± 3,4); Dicranella cerviculata (65,9± 1,8), D. heteromalla (36,2± 1,7) and D. varia (36,7± 1,6). The species differ between themselves in the amount and in the formation rate of gravitropic filaments, as well as in gravitropic sensing at different stages of development. The greatest number of gravitropic filaments and the highest rate of bending were seen in protonemata of L. pyriforme and D. cerviculata. Gravitropic sensing in protonemata of L. pyriforme appeared to be higher in than in gametophores (30,2± 1,9), whereas in B. caespiticium more gravity sensitive were in gametophores (59,9± 1,5), forming lot of gravitropic filaments along all shoot (33,8± 3,7). In the other investigated species gravitropic filaments formed polarily on apex and in basis of shoot, in number not greater than 10. This research was supported by NASA grant NN-09 (R).

  12. Análisis del portafolio como herramienta evaluativa de las prácticas clínicas de enfermería comunitaria en estudiantes de pregrado Portfolio analysis as evaluation tool of Community Nursing Clinical Practice Learning in undergraduates

    Directory of Open Access Journals (Sweden)

    P. Serrano-Gallardo

    2010-09-01

    usefulness of the portfolio as assessment tool for Community Nursing Clinical Practice Learning in the Puerta de Hierro Nursing School of Universidad Autónoma de Madrid (UAM, and to assess the influence of sociodemographic and academic variables in the process of continuous evaluation of the portfolio. Subjects and methods. cross-sectional study in the context of a teaching innovation project funded by the UAM. The target population: students of 2nd and 3rd courses of Puerta de Hierro Nursing School (UAM that made their Community Nursing Clinical Practice Learning in the setting of the Primary Health Care (n = 38. Main outcomes: intermedium and final scores in the works that includes the portfolio ("reflective diary", "clinical case" and "analysis of community health", timeliness of delivery, difficulty, usefulness and perceived improvement of learning, hours spent/week, student self-assessment, qualification of the tutor, final evaluation of the portfolio. Bivariate analysis was done using nonparametric tests. Confidence intervals were calculated for 95% confidence. Results. 38 students were studied. The mean age was of 21.5 ± 4.3 years-old, 81.6% women. Difficulty was high in 56.7%. The utility was noted as high in 72.9%. The student self-assessment average score was 7.68, the evaluation of the tutor: 8.31 and portfolio final score by the teachers: 7,07. Conclusions. The implementation of portfolio has shown the difficulty felt by students in a process requiring reflective writing, daily work and self-evaluation. However, these difficulties translate into a high perception of usefulness and improve learning.

  13. Evaluation of Seed and Forage Yield of Perennial Plants with Low Water Requirement in Abandoned Farming Lands

    Directory of Open Access Journals (Sweden)

    Ali gazanchian

    2017-10-01

    Full Text Available Introduction Drought is a natural phenomenon in arid and semi-arid regions of the world. It is created by low precipitation, high evaporation and reduced soil moisture. Today, they are the major threats to agricultural lands due to fluctuations in rainfall, limited water resources, wells salinization and subsequently abandoned farming lands. Iran is located on the world's dry belt and more than 90 percent of its area is located in the arid and semi-arid climatic regions. It has been reported that the annual rate of soil erosion is up to 33 tons per hectare and 5 to 6 times more than the standard limit. Also, 90% of the country's protein production comes from animals sources. Due to the lack of adequate forage production, the main burden of protein production is imposed on the natural resources and pastures. Therefore, In order to enhance soil stabilization and maintain its fertility, optimum use of off-season precipitations, preventing the flow of water and protecting the abandoned farming lands from the flood risk, increasing the water permeability in the soil, and helping to feed the underwater aquifers and finally the production of forage and seeds, the development of perennial plants cultivation is an important conservative practice. The aim of this study is to emphasize on the selection of the best perennial forage species with low water requirements and acceptable performance for renovation of the abandoned farming lands and moving towards sustainable agriculture approaches. Materials and Methods In this experiment, 10 species of perennial grasses (Agropyron elongatum Host., Secale montanum Guss., Festuca arundinaceae Schreb., Dactylis glomerata L., Agropyron intermedium Host., Agropyron repense L., Agropyron cristatum L., Panicum antidutale Retz., Bromus inermis Leyss., Bromus riparius Rehmann, Agropyron cristatum L. and two legumes includes Trifolium pratense L., Onobrychis sativa Lam. were studied at Asatan-e-Ghods Razavi farm in