Phosphorus starvation induces membrane remodeling and recycling in Emiliania huxleyi.

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Shemi, Adva; Schatz, Daniella; Fredricks, Helen F; Van Mooy, Benjamin A S; Porat, Ziv; Vardi, Assaf

2016-08-01

Nutrient availability is an important factor controlling phytoplankton productivity. Phytoplankton contribute c. 50% of the global photosynthesis and possess efficient acclimation mechanisms to cope with nutrient stress. We investigate the cellular response of the bloom-forming coccolithophore Emiliania huxleyi to phosphorus (P) scarcity, which is often a limiting factor in marine ecosystems. We combined mass spectrometry, fluorescence microscopy, transmission electron microscopy (TEM) and gene expression analyses in order to assess diverse cellular features in cells exposed to P limitation and recovery. Early starvation-induced substitution of phospholipids in the cells' membranes with galacto- and betaine lipids. Lipid remodeling was rapid and reversible upon P resupply. The PI3K inhibitor wortmannin reduced phospholipid substitution, suggesting a possible involvement of PI3K- signaling in this process. In addition, P limitation enhanced the formation and acidification of membrane vesicles in the cytoplasm. Intracellular vesicles may facilitate the recycling of cytoplasmic content, which is engulfed in the vesicles and delivered to the main vacuole. Long-term starvation was characterized by a profound increase in cell size and morphological alterations in cellular ultrastructure. This study provides cellular and molecular basis for future ecophysiological assessment of natural E. huxleyi populations in oligotrophic regions. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

A bacterial quorum-sensing precursor induces mortality in the marine coccolithophore, Emiliania huxleyi

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Elizabeth L Harvey

2016-02-01

Full Text Available Interactions between phytoplankton and bacteria play a central role in mediating biogeochemical cycling and food web structure in the ocean. However, deciphering the chemical drivers of these interspecies interactions remains challenging. Here we report the isolation of 2-heptyl-4-quinolone (HHQ, released by Pseudoalteromonas piscicida, a marine gamma-proteobacteria previously reported to induce phytoplankton mortality through a hitherto unknown algicidal mechanism. HHQ functions as both an antibiotic and a bacterial signaling molecule in cell-cell communication in clinical infection models. Co-culture of the bloom-forming coccolithophore, Emiliania huxleyi with both live P. piscicida and cell-free filtrates caused a significant decrease in algal growth. Investigations of the P. piscicida exometabolome revealed HHQ, at nanomolar concentrations, induced mortality in three strains of E. huxleyi. Mortality of E. huxleyi in response to HHQ occurred slowly, implying static growth rather than a singular loss event (e.g. rapid cell lysis. In contrast, the marine chlorophyte, Dunaliella tertiolecta and diatom, Phaeodactylum tricornutum were unaffected by HHQ exposures. These results suggest that HHQ mediates the type of interkingdom interactions that cause shifts in phytoplankton population dynamics. These chemically mediated interactions, and other like it, ultimately influence large-scale oceanographic processes.

A Bacterial Pathogen Displaying Temperature-Enhanced Virulence of the Microalga Emiliania huxleyi

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Mayers, Teaghan J.; Bramucci, Anna R.; Yakimovich, Kurt M.; Case, Rebecca J.

2016-01-01

Emiliania huxleyi is a globally abundant microalga that plays a significant role in biogeochemical cycles. Over the next century, sea surface temperatures are predicted to increase drastically, which will likely have significant effects on the survival and ecology of E. huxleyi. In a warming ocean, this microalga may become increasingly vulnerable to pathogens, particularly those with temperature-dependent virulence. Ruegeria is a genus of Rhodobacteraceae whose population size tracks that of E. huxleyi throughout the alga’s bloom–bust lifecycle. A representative of this genus, Ruegeria sp. R11, is known to cause bleaching disease in a red macroalga at elevated temperatures. To investigate if the pathogenicity of R11 extends to microalgae, it was co-cultured with several cell types of E. huxleyi near the alga’s optimum (18°C), and at an elevated temperature (25°C) known to induce virulence in R11. The algal populations were monitored using flow cytometry and pulse-amplitude modulated fluorometry. Cultures of algae without bacteria remained healthy at 18°C, but lower cell counts in control cultures at 25°C indicated some stress at the elevated temperature. Both the C (coccolith-bearing) and S (scale-bearing swarming) cell types of E. huxleyi experienced a rapid decline resulting in apparent death when co-cultured with R11 at 25°C, but had no effect on N (naked) cell type at either temperature. R11 had no initial negative impact on C and S type E. huxleyi population size or health at 18°C, but caused death in older co-cultures. This differential effect of R11 on its host at 18 and 25°C suggest it is a temperature-enhanced opportunistic pathogen of E. huxleyi. We also detected caspase-like activity in dying C type cells co-cultured with R11, which suggests that programmed cell death plays a role in the death of E. huxleyi triggered by R11 – a mechanism induced by viruses (EhVs) and implicated in E. huxleyi bloom collapse. Given that E. huxleyi has

Temperature, light, and the dimethylsulfoniopropionate (DMSP) content of Emiliania huxleyi (Prymnesiophyceae)

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van Rijssel, M; Gieskes, W.W C

The precursor of the volatile S-compound dimethylsulfide (DMS), dimethylsulfoniopropionate (DMSP), is produced by marine microalgae, notably by Prymnesiophyceae. The production of DMSP by an axenic isolate of Emiliania huxleyi (Lohm.) Hay et Mohler under different temperature and light conditions

Competition for inorganic and organic forms of nitrogen and phosphorous between phytoplankton and bacteria during an Emiliania huxleyi spring bloom

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V. Martin-Jézéquel

2008-03-01

Full Text Available Using 15N and 33P, we measured the turnover of organic and inorganic nitrogen (N and phosphorus (P substrates, and the partitioning of N and P from these sources into two size fractions of marine osmotrophs during the course of a phytoplankton bloom in a nutrient manipulated mesocosm. The larger size fraction (>0.8 μm, mainly consisting of the coccolithophorid Emiliania huxleyi, but also including an increasing amount of large particle-associated bacteria as the bloom proceeded, dominated uptake of the inorganic forms NH4+, NO3−, and PO43−. The uptake of N from leucine, and P from ATP and dissolved DNA, was initially dominated by the 0.8–0.2 μm size fraction, but shifted towards dominance by the >0.8 μm size fraction as the system turned to an increasing degree of N-deficiency. Normalizing uptake to biomass of phytoplankton and heterotrophic bacteria revealed that organisms in the 0.8–0.2 μm size fraction had higher specific affinity for leucine-N than those in the >0.8 μm size fraction when N was deficient, whereas the opposite was the case for NH4+. There was no such difference regarding the specific affinity for P substrates. Since heterotrophic bacteria seem to acquire N from organic compounds like leucine more efficiently than phytoplankton, our results suggest different structuring of the microbial food chain in N-limited relative to P-limited environments.

Acclimation of Emiliania huxleyi (1516) to nutrient limitation involves precise modification of the proteome to scavenge alternative sources of N and P.

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McKew, Boyd A; Metodieva, Gergana; Raines, Christine A; Metodiev, Metodi V; Geider, Richard J

2015-10-01

Limitation of marine primary production by the availability of nitrogen or phosphorus is common. Emiliania huxleyi, a ubiquitous phytoplankter that plays key roles in primary production, calcium carbonate precipitation and production of dimethyl sulfide, often blooms in mid-latitude at the beginning of summer when inorganic nutrient concentrations are low. To understand physiological mechanisms that allow such blooms, we examined how the proteome of E. huxleyi (strain 1516) responds to N and P limitation. We observed modest changes in much of the proteome despite large physiological changes (e.g. cellular biomass, C, N and P) associated with nutrient limitation of growth rate. Acclimation to nutrient limitation did however involve significant increases in the abundance of transporters for ammonium and nitrate under N limitation and for phosphate under P limitation. More notable were large increases in proteins involved in the acquisition of organic forms of N and P, including urea and amino acid/polyamine transporters and numerous C-N hydrolases under N limitation and a large upregulation of alkaline phosphatase under P limitation. This highly targeted reorganization of the proteome towards scavenging organic forms of macronutrients gives unique insight into the molecular mechanisms that underpin how E. huxleyi has found its niche to bloom in surface waters depleted of inorganic nutrients. © 2015 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality.

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Garrido, José L; Brunet, Christophe; Rodríguez, Francisco

2016-12-01

Many studies on photoacclimation examine the pigment responses to changes in light intensity, but variations in light climate in the aquatic environment are also related to changes in spectral composition. We have employed a high-performance liquid chromatography method with improved resolution towards chlorophyll c and fucoxanthin-related xanthophylls to examine the pigment composition of Emiliania huxleyi CCMP 370 under different light intensities and spectral qualities. To maintain its photosynthetic performance, E. huxleyi CCMP370 promotes drastic pigment changes that can be either the interconversion of pigments in pools with the same basic chromophoric structure (Fucoxanthin type or chlorophyll c type), or the ex novo synthesis (Diatoxanthin). These changes are linked either to variations in light quality (Fucoxanthin related xanthophylls) or in light intensity (chlorophyll c 3 /Monovinyl chlorophyll c 3 , Diadinoxanthin/Diatoxanthin, β,ɛ-carotene/ β,β-carotene). Fucoxanthin and 19'-hexanoyloxyfucoxanthin proportions were highly dependent on spectral conditions. Whereas Fucoxanthin dominated in green and red light, 19'-hexanoyloxyfucoxanthin prevailed under blue spectral conditions. Our results suggest that the huge pigment diversity enhanced the photoacclimative capacities of E. huxleyi to efficiently perform under changing light environments. The ubiquity and success in the global ocean as well as the capacity of E. huxleyi to form large surface blooms might be associated to the plasticity described here. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

NO MECHANISTIC DEPENDENCE OF PHOTOSYNTHESIS ON CALCIFICATION IN THE COCCOLITHOPHORID EMILIANIA HUXLEYI (HAPTOPHYTA)(1).

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Leonardos, Nikos; Read, Betsy; Thake, Brenda; Young, Jeremy R

2009-10-01

There is still considerable uncertainty about the relationship between calcification and photosynthesis. It has been suggested that since calcification in coccolithophorids is an intracellular process that releases CO2 , it enhances photosynthesis in a manner analogous to a carbon-concentrating mechanism (CCM). The ubiquitous, bloom-forming, and numerically abundant coccolithophorid Emiliania huxleyi (Lohmann) W. W. Hay et H. Mohler was studied in nutrient-replete, pH and [CO2 ] controlled, continuous cultures (turbidostats) under a range of [Ca(2+) ] from 0 to 9 mM. We examined the long-term, fully acclimated photosynthesis-light responses and analyzed the crystalline structure of the coccoliths using SEM. The E. huxleyi cells completely lost their coccosphere when grown in 0 [Ca(2+) ], while thin, undercalcified and brittle coccoliths were evident at 1 mM [Ca(2+) ]. Coccoliths showed increasing levels of calcification with increasing [Ca(2+) ]. More robust coccoliths were noted, with no discernable differences in coccolith morphology when the cells were grown in either 5 or 9 mM (ambient seawater) [Ca(2+) ]. In contrast to calcification, photosynthesis was not affected by the [Ca(2+) ] in the media. Cells showed no correlation of their light-dependent O2 evolution with [Ca(2+) ], and in all [Ca(2+) ]-containing turbidostats, there were no significant differences in growth rate. The results show unequivocally that as a process, photosynthesis in E. huxleyi is mechanistically independent from calcification. © 2009 Phycological Society of America.

Evidence for strain-specific exometabolomic responses of the coccolithophore Emiliania huxleyi to grazing by the dinoflagellate Oxyrrhis marina.

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Kelsey L Poulson-Ellestad

2016-01-01

Full Text Available The coccolithophore Emiliania huxleyi forms massive blooms and plays a critical role in global elemental cycles, sequestering significant amounts of atmospheric carbon dioxide on geological time scales via production of calcium carbonate coccoliths and emitting dimethyl sulfoniopropionate (DMSP which has the potential for increasing atmospheric albedo. Because grazing in pelagic systems is a major top-down force structuring microbial communities, the influence of grazers on E. huxleyi populations has been of interest to researchers. Roles of DMSP (and related metabolites in interactions between E. huxleyi and protist grazers have been investigated, however, little is known about the release of other metabolites that may influence, or be influenced by, such grazing interactions. We used high-resolution mass spectrometry in an untargeted approach to survey the suite of low molecular weight compounds released by four different E. huxleyi strains in response to grazing by the dinoflagellate Oxyrrhis marina. Overall, a strikingly small number of metabolites were detected from E. huxleyi and O. marina cells, but these were distinctly informative to construct metabolic footprints. At most, E. huxleyi strains shared 25% of released metabolites. Furthermore, there appeared to be no unified metabolic response in E. huxleyi strains to grazing; rather these responses were strain specific. Concentrations of several metabolites also positively correlated with grazer activities, including grazing, ingestion, and growth rates; however, no single metabolite responded uniformly across all strains of E. huxleyi tested. Regardless, grazing clearly transformed the constituents of dissolved organic matter produced by these marine microbes. This study addresses several technical challenges, and presents a platform to further study the influence of chemical cues in aquatic systems and demonstrates the impact of strain diversity and grazing on the complexity of

Phenotypic Variability in the Coccolithophore Emiliania huxleyi.

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Blanco-Ameijeiras, Sonia; Lebrato, Mario; Stoll, Heather M; Iglesias-Rodriguez, Debora; Müller, Marius N; Méndez-Vicente, Ana; Oschlies, Andreas

2016-01-01

Coccolithophores are a vital part of oceanic phytoplankton assemblages that produce organic matter and calcium carbonate (CaCO3) containing traces of other elements (i.e. Sr and Mg). Their associated carbon export from the euphotic zone to the oceans' interior plays a crucial role in CO2 feedback mechanisms and biogeochemical cycles. The coccolithophore Emiliania huxleyi has been widely studied as a model organism to understand physiological, biogeochemical, and ecological processes in marine sciences. Here, we show the inter-strain variability in physiological and biogeochemical traits in 13 strains of E. huxleyi from various biogeographical provinces obtained from culture collections commonly used in the literature. Our results demonstrate that inter-strain genetic variability has greater potential to induce larger phenotypic differences than the phenotypic plasticity of single strains cultured under a broad range of variable environmental conditions. The range of variation found in physiological parameters and calcite Sr:Ca highlights the need to reconsider phenotypic variability in paleoproxy calibrations and model parameterizations to adequately translate findings from single strain laboratory experiments to the real ocean.

Phenotypic Variability in the Coccolithophore Emiliania huxleyi.

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Sonia Blanco-Ameijeiras

Full Text Available Coccolithophores are a vital part of oceanic phytoplankton assemblages that produce organic matter and calcium carbonate (CaCO3 containing traces of other elements (i.e. Sr and Mg. Their associated carbon export from the euphotic zone to the oceans' interior plays a crucial role in CO2 feedback mechanisms and biogeochemical cycles. The coccolithophore Emiliania huxleyi has been widely studied as a model organism to understand physiological, biogeochemical, and ecological processes in marine sciences. Here, we show the inter-strain variability in physiological and biogeochemical traits in 13 strains of E. huxleyi from various biogeographical provinces obtained from culture collections commonly used in the literature. Our results demonstrate that inter-strain genetic variability has greater potential to induce larger phenotypic differences than the phenotypic plasticity of single strains cultured under a broad range of variable environmental conditions. The range of variation found in physiological parameters and calcite Sr:Ca highlights the need to reconsider phenotypic variability in paleoproxy calibrations and model parameterizations to adequately translate findings from single strain laboratory experiments to the real ocean.

Schrödinger's Cheshire Cat: Are Haploid Emiliania huxleyi Cells Resistant to Viral Infection or Not?

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Mordecai, Gideon J; Verret, Frederic; Highfield, Andrea; Schroeder, Declan C

2017-03-18

Emiliania huxleyi is the main calcite producer on Earth and is routinely infected by a virus (EhV); a double stranded DNA (dsDNA) virus belonging to the family Phycodnaviridae . E. huxleyi exhibits a haplodiploid life cycle; the calcified diploid stage is non-motile and forms extensive blooms. The haploid phase is a non-calcified biflagellated cell bearing organic scales. Haploid cells are thought to resist infection, through a process deemed the "Cheshire Cat" escape strategy; however, a recent study detected the presence of viral lipids in the same haploid strain. Here we report on the application of an E. huxleyi CCMP1516 EhV-86 combined tiling array (TA) that further confirms an EhV infection in the RCC1217 haploid strain, which grew without any signs of cell lysis. Reverse transcription polymerase chain reaction (RT-PCR) and PCR verified the presence of viral RNA in the haploid cells, yet indicated an absence of viral DNA, respectively. These infected cells are an alternative stage of the virus life cycle deemed the haplococcolithovirocell. In this instance, the host is both resistant to and infected by EhV, i.e., the viral transcriptome is present in haploid cells whilst there is no evidence of viral lysis. This superimposed state is reminiscent of Schrödinger's cat; of being simultaneously both dead and alive.

Schrödinger’s Cheshire Cat: Are Haploid Emiliania huxleyi Cells Resistant to Viral Infection or Not?

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Gideon J. Mordecai

2017-03-01

Full Text Available Emiliania huxleyi is the main calcite producer on Earth and is routinely infected by a virus (EhV; a double stranded DNA (dsDNA virus belonging to the family Phycodnaviridae. E. huxleyi exhibits a haplodiploid life cycle; the calcified diploid stage is non-motile and forms extensive blooms. The haploid phase is a non-calcified biflagellated cell bearing organic scales. Haploid cells are thought to resist infection, through a process deemed the “Cheshire Cat” escape strategy; however, a recent study detected the presence of viral lipids in the same haploid strain. Here we report on the application of an E. huxleyi CCMP1516 EhV-86 combined tiling array (TA that further confirms an EhV infection in the RCC1217 haploid strain, which grew without any signs of cell lysis. Reverse transcription polymerase chain reaction (RT-PCR and PCR verified the presence of viral RNA in the haploid cells, yet indicated an absence of viral DNA, respectively. These infected cells are an alternative stage of the virus life cycle deemed the haplococcolithovirocell. In this instance, the host is both resistant to and infected by EhV, i.e., the viral transcriptome is present in haploid cells whilst there is no evidence of viral lysis. This superimposed state is reminiscent of Schrödinger’s cat; of being simultaneously both dead and alive.

Schrödinger’s Cheshire Cat: Are Haploid Emiliania huxleyi Cells Resistant to Viral Infection or Not?

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Mordecai, Gideon J.; Verret, Frederic; Highfield, Andrea; Schroeder, Declan C.

2017-01-01

Emiliania huxleyi is the main calcite producer on Earth and is routinely infected by a virus (EhV); a double stranded DNA (dsDNA) virus belonging to the family Phycodnaviridae. E. huxleyi exhibits a haplodiploid life cycle; the calcified diploid stage is non-motile and forms extensive blooms. The haploid phase is a non-calcified biflagellated cell bearing organic scales. Haploid cells are thought to resist infection, through a process deemed the “Cheshire Cat” escape strategy; however, a recent study detected the presence of viral lipids in the same haploid strain. Here we report on the application of an E. huxleyi CCMP1516 EhV-86 combined tiling array (TA) that further confirms an EhV infection in the RCC1217 haploid strain, which grew without any signs of cell lysis. Reverse transcription polymerase chain reaction (RT-PCR) and PCR verified the presence of viral RNA in the haploid cells, yet indicated an absence of viral DNA, respectively. These infected cells are an alternative stage of the virus life cycle deemed the haplococcolithovirocell. In this instance, the host is both resistant to and infected by EhV, i.e., the viral transcriptome is present in haploid cells whilst there is no evidence of viral lysis. This superimposed state is reminiscent of Schrödinger’s cat; of being simultaneously both dead and alive. PMID:28335465

Photosynthesis and Calcification by Emiliania huxleyi (Prymnesiophyceae) as a Function of Inorganic Carbon Species

NARCIS (Netherlands)

Buitenhuis, Erik T.; Baar, Hein J.W. de; Veldhuis, Marcel J.W.

1999-01-01

To test the possibility of inorganic carbon limitation of the marine unicellular alga Emiliania huxleyi (Lohmann) Hay and Mohler, its carbon acquisition was measured as a function of the different chemical species of inorganic carbon present in the medium. Because these different species are

Expression of biomineralization-related ion transport genes in Emiliania huxleyi.

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Mackinder, Luke; Wheeler, Glen; Schroeder, Declan; von Dassow, Peter; Riebesell, Ulf; Brownlee, Colin

2011-12-01

Biomineralization in the marine phytoplankton Emiliania huxleyi is a stringently controlled intracellular process. The molecular basis of coccolith production is still relatively unknown although its importance in global biogeochemical cycles and varying sensitivity to increased pCO₂ levels has been well documented. This study looks into the role of several candidate Ca²⁺, H⁺ and inorganic carbon transport genes in E. huxleyi, using quantitative reverse transcriptase PCR. Differential gene expression analysis was investigated in two isogenic pairs of calcifying and non-calcifying strains of E. huxleyi and cultures grown at various Ca²⁺ concentrations to alter calcite production. We show that calcification correlated to the consistent upregulation of a putative HCO₃⁻ transporter belonging to the solute carrier 4 (SLC4) family, a Ca²⁺/H⁺ exchanger belonging to the CAX family of exchangers and a vacuolar H⁺-ATPase. We also show that the coccolith-associated protein, GPA is downregulated in calcifying cells. The data provide strong evidence that these genes play key roles in E. huxleyi biomineralization. Based on the gene expression data and the current literature a working model for biomineralization-related ion transport in coccolithophores is presented. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Phosphorus limitation and heat stress decrease calcification in Emiliania huxleyi

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Gerecht, Andrea C.; Šupraha, Luka; Langer, Gerald; Henderiks, Jorijntje

2018-02-01

Calcifying haptophytes (coccolithophores) sequester carbon in the form of organic and inorganic cellular components (coccoliths). We examined the effect of phosphorus (P) limitation and heat stress on particulate organic and inorganic carbon (calcite) production in the coccolithophore Emiliania huxleyi. Both environmental stressors are related to rising CO2 levels and affect carbon production in marine microalgae, which in turn impacts biogeochemical cycling. Using semi-continuous cultures, we show that P limitation and heat stress decrease the calcification rate in E. huxleyi. However, using batch cultures, we show that different culturing approaches (batch versus semi-continuous) induce different physiologies. This affects the ratio of particulate inorganic (PIC) to organic carbon (POC) and complicates general predictions on the effect of P limitation on the PIC  /  POC ratio. We found heat stress to increase P requirements in E. huxleyi, possibly leading to lower standing stocks in a warmer ocean, especially if this is linked to lower nutrient input. In summary, the predicted rise in global temperature and resulting decrease in nutrient availability may decrease CO2 sequestration by E. huxleyi through lower overall carbon production. Additionally, the export of carbon may be diminished by a decrease in calcification and a weaker coccolith ballasting effect.

Phosphorus limitation and heat stress decrease calcification in Emiliania huxleyi

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A. C. Gerecht

2018-02-01

Full Text Available Calcifying haptophytes (coccolithophores sequester carbon in the form of organic and inorganic cellular components (coccoliths. We examined the effect of phosphorus (P limitation and heat stress on particulate organic and inorganic carbon (calcite production in the coccolithophore Emiliania huxleyi. Both environmental stressors are related to rising CO2 levels and affect carbon production in marine microalgae, which in turn impacts biogeochemical cycling. Using semi-continuous cultures, we show that P limitation and heat stress decrease the calcification rate in E. huxleyi. However, using batch cultures, we show that different culturing approaches (batch versus semi-continuous induce different physiologies. This affects the ratio of particulate inorganic (PIC to organic carbon (POC and complicates general predictions on the effect of P limitation on the PIC  ∕  POC ratio. We found heat stress to increase P requirements in E. huxleyi, possibly leading to lower standing stocks in a warmer ocean, especially if this is linked to lower nutrient input. In summary, the predicted rise in global temperature and resulting decrease in nutrient availability may decrease CO2 sequestration by E. huxleyi through lower overall carbon production. Additionally, the export of carbon may be diminished by a decrease in calcification and a weaker coccolith ballasting effect.

Functional screening of a novel Δ15 fatty acid desaturase from the coccolithophorid Emiliania huxleyi.

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Kotajima, Tomonori; Shiraiwa, Yoshihiro; Suzuki, Iwane

2014-10-01

The coccolithophorid Emiliania huxleyi is a bloom-forming marine phytoplankton thought to play a key role as a biological pump that transfers carbon from the surface to the bottom of the ocean, thus contributing to the global carbon cycle. This alga is also known to accumulate a variety of polyunsaturated fatty acids. At 25°C, E. huxleyi produces mainly 14:0, 18:4n-3, 18:5n-3 and 22:6n-3. When the cells were transferred from 25°C to 15°C, the amount of unsaturated fatty acids, i.e. 18:1n-9, 18:3n-3 and 18:5n-3, gradually increased. Among the predicted desaturase genes whose expression levels were up-regulated at low temperature, we identified a gene encoding novel ∆15 fatty acid desaturase, EhDES15, involved in the production of n-3 polyunsaturated fatty acids in E. huxleyi. This desaturase contains a putative transit sequence for localization in chloroplasts and a ∆6 desaturase-like domain, but it does not contain a cytochrome b5 domain nor typical His-boxes found in ∆15 desaturases. Heterologous expression of EhDES15 cDNA in cyanobacterium Synechocystis sp. PCC 6803 cells increased the level of n-3 fatty acid species, which are produced at low levels in wild-type cells grown at 30°C. The orthologous genes are only conserved in the genomes of prasinophytes and cryptophytes. The His-boxes conserved in orthologues varied from that of the canonical ∆15 desaturases. These results suggested the gene encodes a novel ∆15 desaturase responsible for the synthesis of 18:3n-3 from 18:2n-6 in E. huxleyi. Copyright © 2014 Elsevier B.V. All rights reserved.

Inherent optical properties of the coccolithophore: Emiliania huxleyi.

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Zhai, Peng-Wang; Hu, Yongxiang; Trepte, Charles R; Winker, David M; Josset, Damien B; Lucker, Patricia L; Kattawar, George W

2013-07-29

A realistic nonspherical model for Emiliania huxleyi (EHUX) is built, based on electron micrographs of coccolithophore cells. The Inherent Optical Properties (IOP) of the EHUX are then calculated numerically by using the discrete dipole approximation. The coccolithophore model includes a near-spherical core with the refractive index of 1.04 + m(i)j, and a carbonate shell formed by smaller coccoliths with refractive index of 1.2 + m(i)j, where m(i) = 0 or 0.01 and j(2) = -1. The reported IOP are the Mueller scattering matrix, backscattering probability, and depolarization ratio. Our calculation shows that the Mueller matrices of coccolithophores show different angular dependence from those of coccoliths.

Change in Emiliania huxleyi Virus Assemblage Diversity but Not in Host Genetic Composition during an Ocean Acidification Mesocosm Experiment.

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Highfield, Andrea; Joint, Ian; Gilbert, Jack A; Crawfurd, Katharine J; Schroeder, Declan C

2017-03-08

Effects of elevated p CO₂ on Emiliania huxleyi genetic diversity and the viruses that infect E. huxleyi (EhVs) have been investigated in large volume enclosures in a Norwegian fjord. Triplicate enclosures were bubbled with air enriched with CO₂ to 760 ppmv whilst the other three enclosures were bubbled with air at ambient p CO₂; phytoplankton growth was initiated by the addition of nitrate and phosphate. E. huxleyi was the dominant coccolithophore in all enclosures, but no difference in genetic diversity, based on DGGE analysis using primers specific to the calcium binding protein gene ( gpa ) were detected in any of the treatments. Chlorophyll concentrations and primary production were lower in the three elevated p CO₂ treatments than in the ambient treatments. However, although coccolithophores numbers were reduced in two of the high- p CO₂ treatments; in the third, there was no suppression of coccolithophores numbers, which were very similar to the three ambient treatments. In contrast, there was considerable variation in genetic diversity in the EhVs, as determined by analysis of the major capsid protein ( mcp ) gene. EhV diversity was much lower in the high- p CO₂ treatment enclosure that did not show inhibition of E. huxleyi growth. Since virus infection is generally implicated as a major factor in terminating phytoplankton blooms, it is suggested that no study of the effect of ocean acidification in phytoplankton can be complete if it does not include an assessment of viruses.

UV radiation induced stress does not affect DMSP synthesis in the marine prymnesiophyte Emiliania huxleyi

NARCIS (Netherlands)

van Rijssel, M; Buma, A.G.J.

2002-01-01

A possible coupling between UV radiation (UVR; 280 to 400 nm) induced stress and the production of dimethylsulfoniopropionate (DMSP), the precursor of the climate-regulating gas dimethylsulfide (DMS), was investigated in the marine prymnesiophyte Emiliania huxleyi. To this end, axenic cultures of E.

A three-dimensional niche comparison of Emiliania huxleyi and Gephyrocapsa oceanica: reconciling observations with projections

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N. A. Gafar

2018-06-01

Full Text Available Coccolithophore responses to changes in carbonate chemistry speciation such as CO2 and H+ are highly modulated by light intensity and temperature. Here, we fit an analytical equation, accounting for simultaneous changes in carbonate chemistry speciation, light and temperature, to published and original data for Emiliania huxleyi, and compare the projections with those for Gephyrocapsa oceanica. Based on our analysis, the two most common bloom-forming species in present-day coccolithophore communities appear to be adapted for a similar fundamental light niche but slightly different ones for temperature and CO2, with E. huxleyi having a tolerance to lower temperatures and higher CO2 levels than G. oceanica. Based on growth rates, a dominance of E. huxleyi over G. oceanica is projected below temperatures of 22 °C at current atmospheric CO2 levels. This is similar to a global surface sediment compilation of E. huxleyi and G. oceanica coccolith abundances suggesting temperature-dependent dominance shifts. For a future Representative Concentration Pathway (RCP 8.5 climate change scenario (1000 µatm fCO2, we project a CO2 driven niche contraction for G. oceanica to regions of even higher temperatures. However, the greater sensitivity of G. oceanica to increasing CO2 is partially mitigated by increasing temperatures. Finally, we compare satellite-derived particulate inorganic carbon estimates in the surface ocean with a recently proposed metric for potential coccolithophore success on the community level, i.e. the temperature-, light- and carbonate-chemistry-dependent CaCO3 production potential (CCPP. Based on E. huxleyi alone, as there was interestingly a better correlation than when in combination with G. oceanica, and excluding the Antarctic province from the analysis, we found a good correlation between CCPP and satellite-derived particulate inorganic carbon (PIC with an R2 of 0.73, p < 0.01 and a slope of 1.03 for austral winter

Release of dissolved carbohydrates by Emiliania huxleyi and formation of transparent exopolymer particles depend on algal life cycle and bacterial activity.

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Van Oostende, Nicolas; Moerdijk-Poortvliet, Tanja C W; Boschker, Henricus T S; Vyverman, Wim; Sabbe, Koen

2013-05-01

The coccolithophore Emiliania huxleyi plays a pivotal role in the marine carbon cycle. However, we have only limited understanding of how its life cycle and bacterial interactions affect the production and composition of dissolved extracellular organic carbon and its transfer to the particulate pool. We traced the fate of photosynthetically fixed carbon during phosphate-limited stationary growth of non-axenic, calcifying E. huxleyi batch cultures, and more specifically the transfer of this carbon to bacteria and to dissolved high molecular weight neutral aldoses (HMW NAld) and extracellular particulate carbon. We then compared the dynamics of dissolved carbohydrates and transparent exopolymer particles (TEP) between cultures of non-axenic and axenic diploid E. huxleyi. In addition, we present the first data on extracellular organic carbon in (non-axenic) haploid E. huxleyi cultures. Bacteria enhanced the accumulation of dissolved polysaccharides and altered the composition of dissolved HMW NAld, while they also stimulated the formation of TEP containing high densities of charged polysaccharides in diploid E. huxleyi cultures. In haploid E. huxleyi cultures we found a more pronounced accumulation of dissolved carbohydrates, which had a different NAld composition than the diploid cultures. TEP formation was significantly lower than in the diploid cultures, despite the presence of bacteria. In diploid E. huxleyi cultures, we measured a high level of extracellular release of organic carbon (34-76%), retrieved mainly in the particulate pool instead of the dissolved pool. Enhanced formation of sticky TEP due to bacteria-alga interactions, in concert with the production of coccoliths, suggests that especially diploid E. huxleyi blooms increase the efficiency of export production in the ocean during dissolved phosphate-limited conditions. © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

Growth of the coccolithophore Emiliania huxleyi in light- and nutrient-limited batch reactors: relevance for the BIOSOPE deep ecological niche of coccolithophores

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Perrin, Laura; Probert, Ian; Langer, Gerald; Aloisi, Giovanni

2016-11-01

Coccolithophores are unicellular calcifying marine algae that play an important role in the oceanic carbon cycle via their cellular processes of photosynthesis (a CO2 sink) and calcification (a CO2 source). In contrast to the well-studied, surface-water coccolithophore blooms visible from satellites, the lower photic zone is a poorly known but potentially important ecological niche for coccolithophores in terms of primary production and carbon export to the deep ocean. In this study, the physiological responses of an Emiliania huxleyi strain to conditions simulating the deep niche in the oligotrophic gyres along the BIOSOPE transect in the South Pacific Gyre were investigated. We carried out batch culture experiments with an E. huxleyi strain isolated from the BIOSOPE transect, reproducing the in situ conditions of light and nutrient (nitrate and phosphate) limitation. By simulating coccolithophore growth using an internal stores (Droop) model, we were able to constrain fundamental physiological parameters for this E. huxleyi strain. We show that simple batch experiments, in conjunction with physiological modelling, can provide reliable estimates of fundamental physiological parameters for E. huxleyi that are usually obtained experimentally in more time-consuming and costly chemostat experiments. The combination of culture experiments, physiological modelling and in situ data from the BIOSOPE cruise show that E. huxleyi growth in the deep BIOSOPE niche is limited by availability of light and nitrate. This study contributes more widely to the understanding of E. huxleyi physiology and behaviour in a low-light and oligotrophic environment of the ocean.

Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi.

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Martínez Martínez, Joaquín; Poulton, Nicole J; Stepanauskas, Ramunas; Sieracki, Michael E; Wilson, William H

2011-01-01

Discriminating infected from healthy cells is the first step to understanding the mechanisms and ecological implications of viral infection. We have developed a method for detecting, sorting, and performing molecular analysis of individual, infected cells of the important microalga Emiliania huxleyi, based on known physiological responses to viral infection. Of three fluorescent dyes tested, FM 1-43 (for detecting membrane blebbing) gave the most unequivocal and earliest separation of cells. Furthermore, we were able to amplify the genomes of single infected cells using Multiple Displacement Amplification. This novel method to reliably discriminate infected from healthy cells in cultures will allow researchers to answer numerous questions regarding the mechanisms and implications of viral infection of E. huxleyi. The method may be transferable to other virus-host systems.

Emiliania Huxleyi (Prymnesiophyceae): Nitrogen-metabolism genes and their expression in response to external nitrogen souces

DEFF Research Database (Denmark)

Bruhn, Annette; LaRoche, Julie; Richardson, Katherine

2010-01-01

The availability and composition of dissolved nitrogen in ocean waters are factors that influence species composition in natural phytoplankton communities. The same factors affect the ratio of organic to inorganic carbon incorporation in calcifying species, such as the coccolithophore Emiliania...... huxleyi (Lohman) W. W. Hay et H. Mohler. E. huxleyi has been shown to thrive on various nitrogen sources, including dissolved organic nitrogen. Nevertheless, assimilation of dissolved nitrogen under nitrogen-replete and -limited conditions is not well understood in this ecologically important species....... In this study, the complete amino acid sequences for three functional genes involved in nitrogen metabolism in E. huxleyi were identified: a putative formamidase, a glutamine synthetase (GSII family), and assimilatory nitrate reductase. Expression patterns of the three enzymes in cells grown on inorganic...

Quantitative Analysis of Carbon Flow into Photosynthetic Products Functioning as Carbon Storage in the Marine Coccolithophore, Emiliania huxleyi.

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Tsuji, Yoshinori; Yamazaki, Masatoshi; Suzuki, Iwane; Shiraiwa, Yoshihiro

2015-08-01

The bloom-forming coccolithophore Emiliania huxleyi (Haptophyta) is a dominant marine phytoplankton, cells of which are covered with calcareous plates (coccoliths). E. huxleyi produces unique lipids of C37-C40 long-chain ketones (alkenones) with two to four trans-unsaturated bonds, β-glucan (but not α-glucan) and acid polysaccharide (AP) associated with the morphogenesis of CaCO3 crystals in coccoliths. Despite such unique features, there is no detailed information on the patterns of carbon allocation into these compounds. Therefore, we performed quantitative estimation of carbon flow into various macromolecular products by conducting (14)C-radiotracer experiments using NaH(14)CO3 as a substrate. Photosynthetic (14)C incorporation into low molecular-mass compounds (LMC), extracellular AP, alkenones, and total lipids except alkenones was estimated to be 35, 13, 17, and 25 % of total (14)C fixation in logarithmic growth phase cells and 33, 19, 18, and 18 % in stationary growth phase cells, respectively. However, less than 1 % of (14)C was incorporated into β-glucan in both cells. (14)C-mannitol occupied ca. 5 % of total fixed (14)C as the most dominant LMC product. Levels of all (14)C compounds decreased in the dark. Therefore, alkenones and LMC (including mannitol), but not β-glucan, function in carbon/energy storage in E. huxleyi, irrespective of the growth phase. Compared with other algae, the low carbon flux into β-glucan is a unique feature of carbon metabolism in E. huxelyi.

Transcriptome analysis of the sulfate deficiency response in the marine microalga Emiliania huxleyi.

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Bochenek, Michal; Etherington, Graham J; Koprivova, Anna; Mugford, Sam T; Bell, Thomas G; Malin, Gill; Kopriva, Stanislav

2013-08-01

The response to sulfate deficiency of plants and freshwater green algae has been extensively analysed by system biology approaches. By contrast, seawater sulfate concentration is high and very little is known about the sulfur metabolism of marine organisms. Here, we used a combination of metabolite analysis and transcriptomics to analyse the response of the marine microalga Emiliania huxleyi as it acclimated to sulfate limitation. Lowering sulfate availability in artificial seawater from 25 to 5 mM resulted in significant reduction in growth and intracellular concentrations of dimethylsulfoniopropionate and glutathione. Sulfate-limited E. huxleyi cells showed increased sulfate uptake but sulfate reduction to sulfite did not seem to be regulated. Sulfate limitation in E. huxleyi affected expression of 1718 genes. The vast majority of these genes were upregulated, including genes involved in carbohydrate and lipid metabolism, and genes involved in the general stress response. The acclimation response of E. huxleyi to sulfate deficiency shows several similarities to the well-described responses of Arabidopsis and Chlamydomonas, but also has many unique features. This dataset shows that even though E. huxleyi is adapted to constitutively high sulfate concentration, it retains the ability to re-program its gene expression in response to reduced sulfate availability. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi.

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Joaquín Martínez Martínez

Full Text Available Discriminating infected from healthy cells is the first step to understanding the mechanisms and ecological implications of viral infection. We have developed a method for detecting, sorting, and performing molecular analysis of individual, infected cells of the important microalga Emiliania huxleyi, based on known physiological responses to viral infection. Of three fluorescent dyes tested, FM 1-43 (for detecting membrane blebbing gave the most unequivocal and earliest separation of cells. Furthermore, we were able to amplify the genomes of single infected cells using Multiple Displacement Amplification. This novel method to reliably discriminate infected from healthy cells in cultures will allow researchers to answer numerous questions regarding the mechanisms and implications of viral infection of E. huxleyi. The method may be transferable to other virus-host systems.

Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208.

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Nissimov, Jozef I; Worthy, Charlotte A; Rooks, Paul; Napier, Johnathan A; Kimmance, Susan A; Henn, Matthew R; Ogata, Hiroyuki; Allen, Michael J

2012-03-01

The Coccolithoviridae are a group of viruses which infect the marine coccolithophorid microalga Emiliania huxleyi. The Emiliania huxleyi viruses (known as EhVs) described herein have 160- to 180-nm diameter icosahedral structures, have genomes of approximately 400 kbp, and consist of more than 450 predicted coding sequences (CDSs). Here, we describe the genomic features of four newly sequenced coccolithoviruses (EhV-88, EhV-201, EhV-207, and EhV-208) together with their draft genome sequences and their annotations, highlighting the homology and heterogeneity of these genomes to the EhV-86 model reference genome.

Dynamics of transparent exopolymer particle (TEP) production and aggregation during viral infection of the coccolithophore, Emiliania huxleyi.

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Nissimov, Jozef I; Vandzura, Rebecca; Johns, Christopher T; Natale, Frank; Haramaty, Liti; Bidle, Kay D

2018-06-19

Emiliania huxleyi produces calcium carbonate (CaCO 3 ) coccoliths and transparent exopolymer particles (TEP), sticky, acidic carbohydrates that facilitate aggregation. E. huxleyi's extensive oceanic blooms are often terminated by coccolithoviruses (EhVs) with the transport of cellular debris and associated particulate organic carbon (POC) to depth being facilitated by TEP-bound "marine snow" aggregates. The dynamics of TEP production and particle aggregation in response to EhV infection are poorly understood. Using flow cytometry, spectrophotometry, and FlowCam visualization of alcian blue (AB)-stained aggregates, we assessed TEP production and the size spectrum of aggregates for E. huxleyi possessing different degrees of calcification and cellular CaCO 3 :POC mass ratios, when challenged with two EhVs (EhV207 and EhV99B1). FlowCam imaging also qualitatively assessed the relative amount of AB-stainable TEP (i.e. blue:red ratio of each particle). We show significant increases in TEP during early phase EhV207-infection (∼24 hours) of calcifying strains and a shift towards large aggregates following EhV99B1-infection. We also observed the formation of large aggregates with low blue:red ratios, suggesting that other exopolymer substances contribute towards aggregation. Our findings show the potential for virus infection and the associated response of their hosts to impact carbon flux dynamics and provide incentive to explore these dynamics in natural populations. This article is protected by copyright. All rights reserved. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Genome variations associated with viral susceptibility and calcification in Emiliania huxleyi.

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Kegel, Jessica U; John, Uwe; Valentin, Klaus; Frickenhaus, Stephan

2013-01-01

Emiliania huxleyi, a key player in the global carbon cycle is one of the best studied coccolithophores with respect to biogeochemical cycles, climatology, and host-virus interactions. Strains of E. huxleyi show phenotypic plasticity regarding growth behaviour, light-response, calcification, acidification, and virus susceptibility. This phenomenon is likely a consequence of genomic differences, or transcriptomic responses, to environmental conditions or threats such as viral infections. We used an E. huxleyi genome microarray based on the sequenced strain CCMP1516 (reference strain) to perform comparative genomic hybridizations (CGH) of 16 E. huxleyi strains of different geographic origin. We investigated the genomic diversity and plasticity and focused on the identification of genes related to virus susceptibility and coccolith production (calcification). Among the tested 31940 gene models a core genome of 14628 genes was identified by hybridization among 16 E. huxleyi strains. 224 probes were characterized as specific for the reference strain CCMP1516. Compared to the sequenced E. huxleyi strain CCMP1516 variation in gene content of up to 30 percent among strains was observed. Comparison of core and non-core transcripts sets in terms of annotated functions reveals a broad, almost equal functional coverage over all KOG-categories of both transcript sets within the whole annotated genome. Within the variable (non-core) genome we identified genes associated with virus susceptibility and calcification. Genes associated with virus susceptibility include a Bax inhibitor-1 protein, three LRR receptor-like protein kinases, and mitogen-activated protein kinase. Our list of transcripts associated with coccolith production will stimulate further research, e.g. by genetic manipulation. In particular, the V-type proton ATPase 16 kDa proteolipid subunit is proposed to be a plausible target gene for further calcification studies.

Evidence for methane production by the marine algae Emiliania huxleyi

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Lenhart, Katharina; Klintzsch, Thomas; Langer, Gerald; Nehrke, Gernot; Bunge, Michael; Schnell, Sylvia; Keppler, Frank

2016-06-01

Methane (CH4), an important greenhouse gas that affects radiation balance and consequently the earth's climate, still has uncertainties in its sinks and sources. The world's oceans are considered to be a source of CH4 to the atmosphere, although the biogeochemical processes involved in its formation are not fully understood. Several recent studies provided strong evidence of CH4 production in oxic marine and freshwaters, but its source is still a topic of debate. Studies of CH4 dynamics in surface waters of oceans and large lakes have concluded that pelagic CH4 supersaturation cannot be sustained either by lateral inputs from littoral or benthic inputs alone. However, regional and temporal oversaturation of surface waters occurs frequently. This comprises the observation of a CH4 oversaturating state within the surface mixed layer, sometimes also termed the "oceanic methane paradox". In this study we considered marine algae as a possible direct source of CH4. Therefore, the coccolithophore Emiliania huxleyi was grown under controlled laboratory conditions and supplemented with two 13C-labeled carbon substrates, namely bicarbonate and a position-specific 13C-labeled methionine (R-S-13CH3). The CH4 production was 0.7 µg particular organic carbon (POC) g-1 d-1, or 30 ng g-1 POC h-1. After supplementation of the cultures with the 13C-labeled substrate, the isotope label was observed in headspace CH4. Moreover, the absence of methanogenic archaea within the algal culture and the oxic conditions during CH4 formation suggest that the widespread marine algae Emiliania huxleyi might contribute to the observed spatially and temporally restricted CH4 oversaturation in ocean surface waters.

Seasonal variability of the carbonate system and coccolithophore Emiliania huxleyi at a Scottish Coastal Observatory monitoring site

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León, Pablo; Walsham, Pam; Bresnan, Eileen; Hartman, Susan E.; Hughes, Sarah; Mackenzie, Kevin; Webster, Lynda

2018-03-01

Lack of information about carbonate chemistry in inshore waters is a 'knowledge gap' in assessing the impacts of changing carbonate chemistry on the marine environment. Assessing the response of calcifying phytoplankton to this changing carbonate chemistry requires a greater understanding of temporal variation. This study provides a description of the variability of carbonate parameters at a monitoring site in the eastern coast of Scotland. Four-years of monthly data were analysed to assess the diversity, abundance and morphometrics of coccolithophores in relation to carbonate chemistry and environmental variables. The seasonality in carbonate parameters reflected the seasonal cycle in phytoplankton activity, with higher total alkalinity concentrations and pH and lower dissolved inorganic carbon concentrations during the growing season. The dominant coccolithophore at the site was Emiliania huxleyi which showed a clear seasonal pattern, being more abundant in mid-summer when warmer and nutrient-depleted conditions restricted the annual diatom bloom. This study revealed the presence of three morphotypes of E. huxleyi, type A, type A overcalcified (type AO) and type B, which were seasonally distributed throughout the year. The less calcified form was mainly observed in spring while heavily calcified morphotypes overlapped during summer. Autumn and winter months were dominated by the most calcified form (type AO). These results indicate that the seasonal pattern of E. huxleyi morphotypes was not related to the carbonate concentration at the site. This study reflects the strong interannual variability in carbonate chemistry and the complexity associated with coccolithophore calcification, and highlights the need of long-term data to understand the potential impact of ocean acidification on calcifying phytoplankton.

Plasticity in the proteome of Emiliania huxleyi CCMP 1516 to extremes of light is highly targeted.

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McKew, Boyd A; Lefebvre, Stephane C; Achterberg, Eric P; Metodieva, Gergana; Raines, Christine A; Metodiev, Metodi V; Geider, Richard J

2013-10-01

Optimality principles are often applied in theoretical studies of microalgal ecophysiology to predict changes in allocation of resources to different metabolic pathways, and optimal acclimation is likely to involve changes in the proteome, which typically accounts for > 50% of cellular nitrogen (N). We tested the hypothesis that acclimation of the microalga Emiliania huxleyi CCMP 1516 to suboptimal vs supraoptimal light involves large changes in the proteome as cells rebalance the capacities to absorb light, fix CO2 , perform biosynthesis and resist photooxidative stress. Emiliania huxleyi was grown in nutrient-replete continuous culture at 30 (LL) and 1000 μmol photons m(-2) s(-1) (HL), and changes in the proteome were assessed by LC-MS/MS shotgun proteomics. Changes were most evident in proteins involved in the light reactions of photosynthesis; the relative abundance of photosystem I (PSI) and PSII proteins was 70% greater in LL, light-harvesting fucoxanthin-chlorophyll proteins (Lhcfs) were up to 500% greater in LL and photoprotective LI818 proteins were 300% greater in HL. The marked changes in the abundances of Lhcfs and LI818s, together with the limited plasticity in the bulk of the E. huxleyi proteome, probably reflect evolutionary pressures to provide energy to maintain metabolic capabilities in stochastic light environments encountered by this species in nature. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Large effect of irradiance on hydrogen isotope fractionation of alkenones in Emiliania huxleyi

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van der Meer, Marcel T. J.; Benthien, Albert; French, Katherine L.; Epping, Eric; Zondervan, Ingrid; Reichart, Gert-Jan; Bijma, Jelle; Sinninghe Damsté, Jaap S.; Schouten, Stefan

2015-07-01

The hydrogen isotopic (δD) composition of long-chain alkenones produced by certain haptophyte algae has been suggested as a potential proxy for reconstructing paleo sea surface salinity. However, environmental parameters other than salinity may also affect the δD of alkenones. We investigated the impact of the level of irradiance on hydrogen isotopic fractionation of alkenones versus growth water by cultivating two strains of the cosmopolitan haptophyte Emiliania huxleyi at different light intensities. The hydrogen isotope fractionation decreased by approximately 40‰ when irradiance was increased from 15 to 200 μmol photons m-2 s-1 above which it was relatively constant. The response is likely a direct effect of photosystem I and II activity as the relationship of the fractionation factor α versus light intensity can be described by an Eilers-Peeters photosynthesis model. This irradiance effect is in agreement with published δD data of alkenones derived from suspended particulate matter collected from different depths in the photic zone of the Gulf of California and the eastern tropical North Pacific. However, haptophyte algae tend to bloom at relatively high light intensities (>500 μmol photons m-2 s-1) occurring at the sea surface, at which hydrogen isotope fractionation is relatively constant and not affected by changes in light intensity. Alkenones accumulating in the sediment are likely mostly derived from these surface water haptophyte blooms, when the largest amount of biomass is produced. Therefore, the observed irradiance effect is unlikely to affect the applicability of the hydrogen isotopic composition of sedimentary long chain alkenones as a proxy for paleosalinity.

Phenotypic diversity of diploid and haploid Emiliania huxleyi cells and of cells in different growth phases revealed by comparative metabolomics.

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Mausz, Michaela A; Pohnert, Georg

2015-01-01

In phytoplankton a high species diversity of microalgae co-exists at a given time. But diversity is not only reflected by the species composition. Within these species different life phases as well as different metabolic states can cause additional diversity. One important example is the coccolithophore Emiliania huxleyi. Diploid cells play an important role in marine ecosystems since they can form massively abundant algal blooms but in addition the less abundant haploid life phase of E. huxleyi occurs in lower quantities. Both life phases may fulfill different functions in the plankton. We hypothesize that in addition to the functional diversity caused by this life phase transition the growth stage of cells can also influence the metabolic composition and thus the ecological impact of E. huxleyi. Here we introduce a metabolomic survey in dependence of life phases as well as different growth phases to reveal such changes. The comparative metabolomic approach is based on the extraction of intracellular metabolites from intact microalgae, derivatization and analysis by gas chromatography coupled to mass spectrometry (GC-MS). Automated data processing and statistical analysis using canonical analysis of principal coordinates (CAP) revealed unique metabolic profiles for each life phase. Concerning the correlations of metabolites to growth phases, complex patterns were observed. As for example the saccharide mannitol showed its highest concentration in the exponential phase, whereas fatty acids were correlated to stationary and sterols to declining phase. These results are indicative for specific ecological roles of these stages of E. huxleyi and are discussed in the context of previous physiological and ecological studies. Copyright © 2014 Elsevier GmbH. All rights reserved.

Effect of Ocean Acidification on the Food Quality of the Coccolithophore Emiliania huxleyi

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Maine, J. E.; White, M. M.; Balch, W. M.; Milke, L. M.

2016-02-01

The anthropogenic burning of fossil fuels has doubled atmospheric carbon dioxide (CO2) levels over the last 200 years. Atmospheric CO2 diffuses into the ocean, changing the chemistry and decreasing the pH of seawater in a process called Ocean Acidification (OA). Calcifying marine phytoplankton, coccolithophores, are vulnerable to OA. Emiliania huxleyi is a lipid-dense and globally-abundant species of coccolithophore, therefore it is a vital food source for higher marine trophic levels. The objective of this project was to determine how OA affects the lipid profile and calcification of E. huxleyi CCMP #371. Gas chromatography was used to determine how the proportions of saturated (SFA), monounsaturated (MUFA), and polyunsaturated fatty acids (PUFA) in E. huxleyi varied with increasing pCO2. Flow cytometry was used to measure how the distribution of highly calcified cells, partially calcified cells, and un-calcified cells changed with increasing pCO2. The proportion of MUFA increased with pCO2. The proportion of un-calcified and partially calcified cells increased with increasing pCO2, however, the results varied across two experimental runs. In conclusion, the lipid-profile and calcification properties of E. huxleyi, and likely its food quality to predators, are affected by OA.

Structural analysis of acidic oligosaccharides derived from the methylated, acidic polysaccharide associated with coccoliths of Emiliania huxleyi (lohmann) kamptner

NARCIS (Netherlands)

Fichtinger-Schepman, A.M.J.; Kamerling, J.P.; Versluis, C.; Vliegenthart, J.F.G.

1980-01-01

A series of acidic oligosaccharides was obtained by graded, acid hydrolysis of the methylated, acidic polysaccharide associated with the coccoliths of the alga Emiliania huxleyi (Lohmann) Kamptner. After fractionation by ion-exchange chromatography, the structures of the oligosaccharides were

Size-fractionated dissolved primary production and carbohydrate composition of the coccolithophore Emiliania huxleyi

Science.gov (United States)

Borchard, C.; Engel, A.

2015-02-01

Extracellular release (ER) by phytoplankton is the major source of fresh dissolved organic carbon (DOC) in marine ecosystems and accompanies primary production during all growth phases. Little is known, so far, on size and composition of released molecules, and to which extent ER occurs passively, by leakage, or actively, by exudation. Here, we report on ER by the widespread and bloom-forming coccolithophore Emiliania huxleyi grown under steady-state conditions in phosphorus-controlled chemostats (N:P = 29, growth rate of μ = 0.2 d-1) at present-day and high-CO2 concentrations. 14C incubations were performed to determine primary production (PP), comprised of particulate (PO14C) and dissolved organic carbon (DO14C). Concentration and composition of particulate combined carbohydrates (pCCHO) and high-molecular-weight (>1 kDa, HMW) dissolved combined carbohydrates (dCCHO) were determined by ion chromatography. Information on size distribution of ER products was obtained by investigating distinct size classes (10 kDa was significantly different, with a higher mol% of arabinose. The mol% of acidic sugars increased and that of glucose decreased with increasing size of HMW-dCCHO. We conclude that larger polysaccharides follow different production and release pathways than smaller molecules, potentially serving distinct ecological and biogeochemical functions.

Characterization of the Small RNA Transcriptome of the Marine Coccolithophorid, Emiliania huxleyi.

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Zhang, Xiaoyu; Gamarra, Jaime; Castro, Steven; Carrasco, Estela; Hernandez, Aaron; Mock, Thomas; Hadaegh, Ahmad R; Read, Betsy A

2016-01-01

Small RNAs (smRNAs) control a variety of cellular processes by silencing target genes at the transcriptional or post-transcription level. While extensively studied in plants, relatively little is known about smRNAs and their targets in marine phytoplankton, such as Emiliania huxleyi (E. huxleyi). Deep sequencing was performed of smRNAs extracted at different time points as E. huxleyi cells transition from logarithmic to stationary phase growth in batch culture. Computational analyses predicted 18 E. huxleyi specific miRNAs. The 18 miRNA candidates and their precursors vary in length (18-24 nt and 71-252 nt, respectively), genome copy number (3-1,459), and the number of genes targeted (2-107). Stem-loop real time reverse transcriptase (RT) PCR was used to validate miRNA expression which varied by nearly three orders of magnitude when growth slows and cells enter stationary phase. Stem-loop RT PCR was also used to examine the expression profiles of miRNA in calcifying and non-calcifying cultures, and a small subset was found to be differentially expressed when nutrients become limiting and calcification is enhanced. In addition to miRNAs, endogenous small RNAs such as ra-siRNAs, ta-siRNAs, nat-siRNAs, and piwiRNAs were predicted along with the machinery for the biogenesis and processing of si-RNAs. This study is the first genome-wide investigation smRNAs pathways in E. huxleyi. Results provide new insights into the importance of smRNAs in regulating aspects of physiological growth and adaptation in marine phytoplankton and further challenge the notion that smRNAs evolved with multicellularity, expanding our perspective of these ancient regulatory pathways.

Characterization of the Small RNA Transcriptome of the Marine Coccolithophorid, Emiliania huxleyi.

Directory of Open Access Journals (Sweden)

Xiaoyu Zhang

Full Text Available Small RNAs (smRNAs control a variety of cellular processes by silencing target genes at the transcriptional or post-transcription level. While extensively studied in plants, relatively little is known about smRNAs and their targets in marine phytoplankton, such as Emiliania huxleyi (E. huxleyi. Deep sequencing was performed of smRNAs extracted at different time points as E. huxleyi cells transition from logarithmic to stationary phase growth in batch culture. Computational analyses predicted 18 E. huxleyi specific miRNAs. The 18 miRNA candidates and their precursors vary in length (18-24 nt and 71-252 nt, respectively, genome copy number (3-1,459, and the number of genes targeted (2-107. Stem-loop real time reverse transcriptase (RT PCR was used to validate miRNA expression which varied by nearly three orders of magnitude when growth slows and cells enter stationary phase. Stem-loop RT PCR was also used to examine the expression profiles of miRNA in calcifying and non-calcifying cultures, and a small subset was found to be differentially expressed when nutrients become limiting and calcification is enhanced. In addition to miRNAs, endogenous small RNAs such as ra-siRNAs, ta-siRNAs, nat-siRNAs, and piwiRNAs were predicted along with the machinery for the biogenesis and processing of si-RNAs. This study is the first genome-wide investigation smRNAs pathways in E. huxleyi. Results provide new insights into the importance of smRNAs in regulating aspects of physiological growth and adaptation in marine phytoplankton and further challenge the notion that smRNAs evolved with multicellularity, expanding our perspective of these ancient regulatory pathways.

Mingled Mortality: the Interplay Between Protist Grazing and Viral Lysis on Emiliania huxleyi Cell Fate

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Harvey, E.; Bidle, K. D.; Johnson, M. D.

2016-02-01

The coccolithophore, Emiliania huxleyi plays a prominent role in global carbon cycling, as their calcite coccoliths account for a third of all oceanic calcite production. Mortality due to grazing by microzooplankton is the largest contributor to phytoplankton loss in the marine environment. However, viral infection of E. huxleyi is now thought to be as important as grazing pressure in contributing to its mortality. To understand the influence of viral infection on grazing dynamics, we examined the response of the dinoflagellate predator, Oxyrrhis marina to E. huxleyi infected with four different strains of the E. huxleyi virus (EhV). Grazing rate was significantly slower on E. huxleyi cultures that had been infected for 48 h compared to an uninfected control and this reduction in grazing rate was dependent on the strain identity of infecting EhVs. Additional experimentation indicated that grazing was the primary source of E. huxleyi loss ( 78-98%) during the first 24 h of exposure to both predator and virus. However, as viral infection progressed into the late lytic phase (48 h hour post infection), the relative contribution of grazing to total E. huxleyi mortality decreased ( 5-60%). These results suggest that mortality is partitioned along a gradient between predator-based consumption and virus-induced cell lysis, dependent on the timing of infection. Deciphering the relative importance and interactive nature of these alga-predator-viral interactions will help to elucidate the mechanisms that drive bulk measurements of phytoplankton loss, a necessary understanding to interpret and predict phytoplankton population dynamics and associated biogeochemical cycling.

Abnormal carbonate diagenesis in Holocene-late Pleistocene sapropel-associated sediments from the Eastern Mediterranean; Evidence from Emiliania huxleyi coccolith morphology

DEFF Research Database (Denmark)

Crudeli, D.; Young, J.R.; Erba, E.

2004-01-01

In studying the Holocene-late Pleistocene record of the Eastern Mediterranean, considerable Emiliania huxleyi size/shape variation not clearly assignable to primary or secondary calcification was observed. Accordingly, different morphotypes were distinguished by light microscope (LM). A subsequent......, but also that they show effects of carbonate precipitation and dissolution much more clearly than other coccoliths. The relative abundances of the different LM-morphotypes were used to define an E. huxleyi overgrowth index (EXO) that qualitatively estimates carbonate precipitation/dissolution on coccoliths...

7000 years of Emiliania huxleyi viruses in the Black Sea.

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Coolen, Marco J L

2011-07-22

A 7000-year record of Coccolithovirus and its host, the calcifying haptophyte Emiliania huxleyi, was reconstructed on the basis of genetic signatures preserved in sediments underlying the Black Sea. The data show that the same virus and host populations can persist for centuries. Major changes in virus and host populations occurred during early sapropel deposition, ~5600 years ago, and throughout the formation of the coccolith-bearing sediments of Unit I during the past 2500 years, when the Black Sea experienced dramatic changes in hydrologic and nutrient regimes. Unit I saw a reoccurrence of the same host genotype thousands of years later in the presence of a different subset of viruses. Historical plankton virus populations can thus be included in paleoecological and paleoenvironmental studies.

Environmental controls on the elemental composition of a Southern Hemisphere strain of the coccolithophore Emiliania huxleyi

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Feng, Yuanyuan; Roleda, Michael Y.; Armstrong, Evelyn; Law, Cliff S.; Boyd, Philip W.; Hurd, Catriona L.

2018-01-01

A series of semi-continuous incubation experiments were conducted with the coccolithophore Emiliania huxleyi strain NIWA1108 (Southern Ocean isolate) to examine the effects of five environmental drivers (nitrate and phosphate concentrations, irradiance, temperature, and partial pressure of CO2 (pCO2)) on both the physiological rates and elemental composition of the coccolithophore. Here, we report the alteration of the elemental composition of E. huxleyi in response to the changes in these environmental drivers. A series of dose-response curves for the cellular elemental composition of E. huxleyi were fitted for each of the five drivers across an environmentally representative gradient. The importance of each driver in regulating the elemental composition of E. huxleyi was ranked using a semi-quantitative approach. The percentage variations in elemental composition arising from the change in each driver between present-day and model-projected conditions for the year 2100 were calculated. Temperature was the most important driver controlling both cellular particulate organic and inorganic carbon content, whereas nutrient concentrations were the most important regulator of cellular particulate nitrogen and phosphorus of E. huxleyi. In contrast, elevated pCO2 had the greatest influence on cellular particulate inorganic carbon to organic carbon ratio, resulting in a decrease in the ratio. Our results indicate that the different environmental drivers play specific roles in regulating the elemental composition of E. huxleyi with wide-reaching implications for coccolithophore-related marine biogeochemical cycles, as a consequence of the regulation of E. huxleyi physiological processes.

Bacterial Diversity Associated with the Coccolithophorid Algae Emiliania huxleyi and Coccolithus pelagicus f. braarudii

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David H. Green

2015-01-01

Full Text Available Coccolithophores are unicellular calcifying marine phytoplankton that can form large and conspicuous blooms in the oceans and make significant contributions to oceanic carbon cycling and atmospheric CO2 regulation. Despite their importance, the bacterial diversity associated with these algae has not been explored for ecological or biotechnological reasons. Bacterial membership of Emiliania huxleyi and Coccolithus pelagicus f. braarudii cultures was assessed using cultivation and cultivation-independent methods. The communities were species rich compared to other phytoplankton cultures. Community analysis identified specific taxa which cooccur in all cultures (Marinobacter and Marivita. Hydrocarbon-degrading bacteria were found in all cultures. The presence of Acidobacteria, Acidimicrobidae, Schlegelella, and Thermomonas was unprecedented but were potentially explained by calcification associated with coccolith production. One strain of Acidobacteria was cultivated and is closely related to a marine Acidobacteria isolated from a sponge. From this assessment of the bacterial diversity of coccolithophores, a number of biotechnological opportunities are evident, from bioprospecting for novel taxa such as Acidobacteria to helping understand the relationship between obligate hydrocarbonoclastic bacteria occurrence with phytoplankton and to revealing bacterial taxa that have a specific association with algae and may be suitable candidates as a means to improve the efficiency of mass algal cultivation.

Iron transport and storage in the coccolithophore: Emiliania huxleyi.

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Hartnett, Andrej; Böttger, Lars H; Matzanke, Berthold F; Carrano, Carl J

2012-11-01

Iron is an essential element for all living organisms due to its ubiquitous role in redox and other enzymes, especially in the context of respiration and photosynthesis. The iron uptake and storage systems of terrestrial/higher plants are now reasonably well understood with two basic strategies for iron uptake being distinguished: strategy I plants use a mechanism involving soil acidification and induction of Fe(III)-chelate reductase (ferrireductase) and Fe(II) transporter proteins while strategy II plants have evolved sophisticated systems based on high-affinity, iron specific, binding compounds called phytosiderophores. In contrast, there is little knowledge about the corresponding systems in marine plant-like lineages. Herein we report a study of the iron uptake and storage mechanisms in the coccolithophore Emiliania huxleyi. Short term radio-iron uptake studies indicate that iron is taken up by Emiliania in a time and concentration dependent manner consistent with an active transport process. Based on inhibitor studies it appears that iron is taken up directly as Fe(iii). However if a reductive step is involved the Fe(II) must not be accessible to the external environment. Upon long term exposure to (57)Fe we have been able, using a combination of Mössbauer and XAS spectroscopies, to identify a single metabolite which displays spectral features similar to the phosphorus-rich mineral core of bacterial and plant ferritins.

Virus-induced apoptosis and phosphorylation form of metacaspase in the marine coccolithophorid Emiliania huxleyi.

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Liu, Jingwen; Cai, Weicong; Fang, Xian; Wang, Xueting; Li, Guiling

2018-04-01

Lytic viral infection and programmed cell death (PCD) are thought to represent two distinct death mechanisms in phytoplankton, unicellular photoautotrophs that drift with ocean currents. PCD (apoptosis) is mainly brought about by the activation of caspases, a protease family with unique substrate selectivity. Here, we demonstrated that virus infection induced apoptosis of marine coccolithophorid Emiliania huxleyi BOF92 involving activation of metacaspase. E. huxleyi cells exhibited cell death process akin to that of apoptosis when exposed to virus infection. We observed typical hallmarks of apoptosis including cell shrinkage, associated nuclear morphological changes and DNA fragmentation. Immunoblotting revealed that antibody against human active-caspase-3 shared epitopes with a protein of ≈ 23 kDa; whose pattern of expression correlated with the onset of cell death. Moreover, analysis on two-dimensional gel electrophoresis revealed that two spots of active caspase-3 co-migrated with the different isoelectric points. Phosphatase treatment of cytosolic extracts containing active caspases-3 showed a mobility shift, suggesting that phosphorylated form of this enzyme might be present in the extracts. Computational prediction of phosphorylation sites based on the amino acid sequence of E. huxleyi metacaspase showed multiple phosphorylated sites for serine, threonine and tyrosine residues. This is the first report showing that phosphorylation modification of metacaspase in E. huxleyi might be required for certain biochemical and morphological changes during virus induced apoptosis.

A synergetic biomineralization strategy for immobilizing strontium during calcification of the coccolithophore Emiliania huxleyi.

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Sun, Shiyong; Liu, Mingxue; Nie, Xiaoqin; Dong, Faqin; Hu, Wenyuan; Tan, Daoyong; Huo, Tingting

2018-01-24

The coccolithophore species Emiliania huxleyi has one of the most global distributions in the modern oceans. They are characteristically covered with calcite scales called coccoliths. In this study, stable strontium immobilization during the calcification process was investigated to indirectly assess a proposed bioremediation approach for removing Sr 2+ contamination from marine environments. Results indicate that E. huxleyi has high Sr 2+ tolerance and removal efficiency in response to Sr 2+ stress ranging from 5.6 to 105.6 ppm. Sr 2+ immobilization during E. huxleyi calcification indicates a concentration-dependent synergistic mechanism. At lower concentrations of Sr 2+ (25.6 ppm), Sr 2+ is incorporated into coccoliths through competitive supply between Sr 2+ and Ca 2+ . In addition, calcite productivity decreases with increased Sr 2+ removal efficiency due to crystallographic transformation of coccoliths from hydrated calcite into aragonite at 55.6 ppm Sr 2+ . Further formation of strontianite at 105.6 ppm Sr 2+ is due to precipitation of Sr 2+ on the edge of the rims and radial arrays of the coccoliths. Our study implies that coccolithophores are capable of significant removal of Sr 2+ from the marine environment.

Environmental controls on the elemental composition of a Southern Hemisphere strain of the coccolithophore Emiliania huxleyi

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Y. Feng

2018-01-01

Full Text Available A series of semi-continuous incubation experiments were conducted with the coccolithophore Emiliania huxleyi strain NIWA1108 (Southern Ocean isolate to examine the effects of five environmental drivers (nitrate and phosphate concentrations, irradiance, temperature, and partial pressure of CO2 (pCO2 on both the physiological rates and elemental composition of the coccolithophore. Here, we report the alteration of the elemental composition of E. huxleyi in response to the changes in these environmental drivers. A series of dose–response curves for the cellular elemental composition of E. huxleyi were fitted for each of the five drivers across an environmentally representative gradient. The importance of each driver in regulating the elemental composition of E. huxleyi was ranked using a semi-quantitative approach. The percentage variations in elemental composition arising from the change in each driver between present-day and model-projected conditions for the year 2100 were calculated. Temperature was the most important driver controlling both cellular particulate organic and inorganic carbon content, whereas nutrient concentrations were the most important regulator of cellular particulate nitrogen and phosphorus of E. huxleyi. In contrast, elevated pCO2 had the greatest influence on cellular particulate inorganic carbon to organic carbon ratio, resulting in a decrease in the ratio. Our results indicate that the different environmental drivers play specific roles in regulating the elemental composition of E. huxleyi with wide-reaching implications for coccolithophore-related marine biogeochemical cycles, as a consequence of the regulation of E. huxleyi physiological processes.

Temperature effects on sinking velocity of different Emiliania huxleyi strains.

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Rosas-Navarro, Anaid; Langer, Gerald; Ziveri, Patrizia

2018-01-01

The sinking properties of three strains of Emiliania huxleyi in response to temperature changes were examined. We used a recently proposed approach to calculate sinking velocities from coccosphere architecture, which has the advantage to be applicable not only to culture samples, but also to field samples including fossil material. Our data show that temperature in the sub-optimal range impacts sinking velocity of E. huxleyi. This response is widespread among strains isolated in different locations and moreover comparatively predictable, as indicated by the similar slopes of the linear regressions. Sinking velocity was positively correlated to temperature as well as individual cell PIC/POC over the sub-optimum to optimum temperature range in all strains. In the context of climate change our data point to an important influence of global warming on sinking velocities. It has recently been shown that seawater acidification has no effect on sinking velocity of a Mediterranean E. huxleyi strain, while nutrient limitation seems to have a small negative effect on sinking velocity. Given that warming, acidification, and lowered nutrient availability will occur simultaneously under climate change scenarios, the question is what the net effect of different influential factors will be. For example, will the effects of warming and nutrient limitation cancel? This question cannot be answered conclusively but analyses of field samples in addition to laboratory culture studies will improve predictions because in field samples multi-factor influences and even evolutionary changes are not excluded. As mentioned above, the approach of determining sinking rate followed here is applicable to field samples. Future studies could use it to analyse not only seasonal and geographic patterns but also changes in sinking velocity over geological time scales.

Morphological and Phylogenetic Characterization of New Gephyrocapsa Isolates Suggests Introgressive Hybridization in the Emiliania/Gephyrocapsa Complex (Haptophyta).

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Bendif, El Mahdi; Probert, Ian; Young, Jeremy R; von Dassow, Peter

2015-07-01

The coccolithophore genus Gephyrocapsa contains a cosmopolitan assemblage of pelagic species, including the bloom-forming Gephyrocapsa oceanica, and is closely related to the emblematic coccolithophore Emiliania huxleyi within the Noëlaerhabdaceae. These two species have been extensively studied and are well represented in culture collections, whereas cultures of other species of this family are lacking. We report on three new strains of Gephyrocapsa isolated into culture from samples from the Chilean coastal upwelling zone using a novel flow cytometric single-cell sorting technique. The strains were characterized by morphological analysis using scanning electron microscopy and phylogenetic analysis of 6 genes (nuclear 18S and 28S rDNA, plastidial 16S and tufA, and mitochondrial cox1 and cox3 genes). Morphometric features of the coccoliths indicate that these isolates are distinct from G. oceanica and best correspond to G. muellerae. Surprisingly, both plastidial and mitochondrial gene phylogenies placed these strains within the E. huxleyi clade and well separated from G. oceanica isolates, making Emiliania appear polyphyletic. The only nuclear sequence difference, 1bp in the 28S rDNA region, also grouped E. huxleyi with the new Gephyrocapsa isolates and apart from G. oceanica. Specifically, the G. muellerae morphotype strains clustered with the mitochondrial β clade of E. huxleyi, which, like G. muellerae, has been associated with cold (temperate and sub-polar) waters. Among putative evolutionary scenarios that could explain these results we discuss the possibility that E. huxleyi is not a valid taxonomic unit, or, alternatively the possibility of past hybridization and introgression between each E. huxleyi clade and older Gephyrocapsa clades. In either case, the results support the transfer of Emiliania to Gephyrocapsa. These results have important implications for relating morphological species concepts to ecological and evolutionary units of diversity

Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2 enrichment.

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Fukuda, Shin-Ya; Suzuki, Yurina; Shiraiwa, Yoshihiro

2014-09-01

Ocean acidification, one of the great global environmental issues at present, is expected to result in serious damage on marine calcareous organisms such as corals and calcifying algae, which potentially release huge amounts of CO2 from the ocean to the atmosphere. The coccolithophore, Emiliania huxleyi (Haptophyceae), which frequently produces blooms, has greatly contributed to the biological CO2 pump. This study was aimed at analyzing effects of how E. huxleyi responds to acidification. Acidification was performed by two methods, namely by just adding HCl under bubbling ordinary air at 8.2-8.4, 7.6-7.8 and 7.1-7.3 (acidification by HCl) and by bubbling with ordinary air or with increased CO2 concentration such as 406, 816 and 1,192 ppm that maintained pH of the medium at 8.0-8.3, 7.6-7.9 and 7.5-7.7 (acidification by CO2 enrichment). As a result, cell growth and cellular calcification of E. huxleyi were strongly damaged by acidification by HCl, but not by acidification by CO2 enrichment. The activities of photosystems such as F v/F m and ϕPSII were not affected by any acidification conditions while photosynthetic O2 evolution was slightly stimulated. A (45)Ca-radiotracer experiment revealed that Ca(2+)-uptake was strongly suppressed by acidification with HCl. This suppression recovered after increasing the dissolved inorganic carbon (DIC) concentration and further stimulated by an additional increase in DIC concentration. The production of storage and coccolith polysaccharides was increased by acidification by HCl and also highly stimulated by acidification with CO2 enrichment. The present study clearly showed that the coccolithophore, E. huxleyi, has an ability to respond positively to acidification with CO2 enrichment, but not just acidification.

Incorporation of zinc into the coccoliths of the microalga Emiliania huxleyi.

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Santomauro, Giulia; Sun, Wei-Lin; Brümmer, Franz; Bill, Joachim

2016-04-01

The coccolithophore Emiliania huxleyi is covered with elaborated calcite plates, the so-called coccoliths, which are produced inside the cells. We investigated the incorporation of zinc into the coccoliths of E. huxleyi by applying different zinc and calcium amounts via the culture media and subsequently analyzing the zinc content in the cells and the Zn/Ca ratio of the coccoliths. To investigate the Zn/Ca ratio of coccoliths built in the manipulated media, the algae have first to be decalcified, i.e. coccolith free. We used a newly developed decalcification method to obtain 'naked' cells for cultivation. E. huxleyi proliferated and produced new coccoliths in all media with manipulated Zn/Ca ratios. The cells and the newly built coccoliths were investigated regarding their zinc content and their Zn/Ca ratio, respectively. High zinc amounts were taken up by the algae. The Zn/Ca ratio of the coccoliths was positively correlated to the Zn/Ca ratio of the applied media. The unique feature of the coccoliths was maintained also at high Zn/Ca ratios. We suggest the following pathway of the zinc ions into the coccoliths: first, the zinc ions are bound to the cell surface, followed by their transportation into the cytoplasm. Obviously, the zinc ions are removed afterwards into the coccolith vesicle, where the zinc is incorporated into the calcite coccoliths which are then extruded. The incorporation of toxic zinc ions into the coccoliths possibly due to a new function of the coccoliths as detoxification sites is discussed.

Reduced calcification decreases photoprotective capability in the coccolithophorid Emiliania huxleyi.

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Xu, Kai; Gao, Kunshan

2012-07-01

Intracellular calcification of coccolithophores generates CO₂ and consumes additional energy for acquisition of calcium and bicarbonate ions; therefore, it may correlate with photoprotective processes by influencing the energetics. To address this hypothesis, a calcifying Emiliania huxleyi strain (CS-369) was grown semi-continuously at reduced (0.1 mM, LCa) and ambient Ca²⁺ concentrations (10 mM, HCa) for 150 d (>200 generations). The HCa-grown cells had higher photosynthetic and calcification rates and higher contents of Chl a and carotenoids compared with the naked (bearing no coccoliths) LCa-grown cells. When exposed to stressfull levels of photosynthetically active radiation (PAR), LCa-grown cells displayed lower photochemical yield and less efficient non-photochemical quenching (NPQ). When the LCa- or HCa-grown cells were inversely shifted to their counterpart medium, LCa to HCa transfer increased photosynthetic carbon fixation (P), calcification rate (C), the C/P ratio, NPQ and pigment contents, whereas those shifted from HCa to LCa exhibited the opposite effects. Increased NPQ, carotenoids and quantum yield were clearly linked with increased or sustained calcification in E. huxleyi. The calcification must have played a role in dissipating excessive energy or as an additional drainage of electrons absorbed by the photosynthetic antennae. This phenomenon was further supported by testing two non-calcifying strains, which showed insignificant changes in photosynthetic carbon fixation and NPQ when transferred to LCa conditions.

Identification and functional characterisation of genes encoding the omega-3 polyunsaturated fatty acid biosynthetic pathway from the coccolithophore Emiliania huxleyi.

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Sayanova, Olga; Haslam, Richard P; Calerón, Monica Venegas; López, Noemi Ruiz; Worthy, Charlotte; Rooks, Paul; Allen, Michael J; Napier, Johnathan A

2011-05-01

The Prymnesiophyceae coccolithophore Emiliania huxleyi is one of the most abundant alga in our oceans and therefore plays a central role in marine foodwebs. E. huxleyi is notable for the synthesis and accumulation of the omega-3 long chain polyunsaturated fatty acid docosahexaenoic acid (DHA; 22:6Δ(4,7,10,13,16,19), n-3) which is accumulated in fish oils and known to have health-beneficial properties to humans, preventing cardiovascular disease and related pathologies. Here we describe the identification and functional characterisation of the five E. huxleyi genes which direct the synthesis of docosahexaenoic acid in this alga. Surprisingly, E. huxleyi does not use the conventional Δ6-pathway, instead using the alternative Δ8-desaturation route which has previously only been observed in a few unrelated microorganisms. Given that E. huxleyi accumulates significant levels of the Δ6-desaturated fatty acid stearidonic acid (18:4Δ(6,9,12,15), n-3), we infer that the biosynthesis of DHA is likely to be metabolically compartmentalised from the synthesis of stearidonic acid. Copyright © 2011 Elsevier Ltd. All rights reserved.

Solar UV irradiances modulate effects of ocean acidification on the coccolithophorid Emiliania huxleyi.

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Xu, Kai; Gao, Kunshan

2015-01-01

Emiliania huxleyi, the most abundant coccolithophorid in the oceans, is naturally exposed to solar UV radiation (UVR, 280-400 nm) in addition to photosynthetically active radiation (PAR). We investigated the physiological responses of E. huxleyi to the present day and elevated CO2 (390 vs 1000 μatm; with pH(NBS) 8.20 vs 7.86) under indoor constant PAR and fluctuating solar radiation with or without UVR. Enrichment of CO2 stimulated the production rate of particulate organic carbon (POC) under constant PAR, but led to unchanged POC production under incident fluctuating solar radiation. The production rates of particulate inorganic carbon (PIC) as well as PIC/POC ratios were reduced under the elevated CO2, ocean acidification (OA) condition, regardless of PAR levels, and the presence of UVR. However, moderate levels of UVR increased PIC production rates and PIC/POC ratios. OA treatment interacted with UVR to influence the alga's physiological performance, leading to reduced specific growth rate in the presence of UVA (315-400 nm) and decreased quantum yield, along with enhanced nonphotochemical quenching, with addition of UVB (280-315 nm). The results clearly indicate that UV radiation needs to be invoked as a key stressor when considering the impacts of ocean acidification on E. huxleyi. © 2014 The American Society of Photobiology.

PHOTOSYNTHETIC PIGMENT AND GENETIC DIFFERENCES BETWEEN TWO SOUTHERN OCEAN MORPHOTYPES OF EMILIANIA HUXLEYI (HAPTOPHYTA)1.

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Cook, Suellen S; Whittock, Lucy; Wright, Simon W; Hallegraeff, Gustaaf M

2011-06-01

The widespread coccolithophorid Emiliania huxleyi (Lohmann) W. W. Hay et H. Mohler plays a pivotal role in the carbon pump and is known to exhibit significant morphological, genetic, and physiological diversity. In this study, we compared photosynthetic pigments and morphology of triplicate strains of Southern Ocean types A and B/C. The two morphotypes differed in width of coccolith distal shield elements (0.11-0.24 μm, type A; 0.06-0.12 μm, type B/C) and morphology of distal shield central area (grill of curved rods in type A; thin plain plate in type B/C) and showed differences in carotenoid composition. The mean 19'-hexanoyloxyfucoxanthin (Hex):chl a ratio in type B/C was >1, whereas the type A ratio was huxleyi var. aurorae var. nov. S. S. Cook et Hallegr. © 2011 Phycological Society of America.

TEM preparation methods and influence of radiation damage on the beam sensitive CaCO3 shell of Emiliania huxleyi.

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Hoffmann, Ramona; Wochnik, Angela S; Betzler, Sophia B; Matich, Sonja; Griesshaber, Erika; Schmahl, Wolfgang W; Scheu, Christina

2014-07-01

The ultrastructure of biologically formed calcium carbonate crystals like the shell of Emiliania huxleyi depends on the environmental conditions such as pH value, temperature and salinity. Therefore, they can be used as indicator for climate changes. However, for this a detailed understanding of their crystal structure and chemical composition is required. High resolution methods like transmission electron microscopy can provide those information on the nanoscale, given that sufficiently thin samples can be prepared. In our study, we developed sample preparation techniques for cross-section and plan-view investigations and studied the sample stability under electron bombardment. In addition to the biological material (Emiliania huxleyi) we also prepared mineralogical samples (Iceland spar) for comparison. High resolution transmission electron microscopy imaging, electron diffraction and electron energy-loss spectroscopy studies revealed that all prepared samples are relatively stable under electron bombardment at an acceleration voltage of 300 kV when using a parallel illumination. Above an accumulated dose of ∼10(5) e/nm2 the material--independent whether its origin is biological or geological--transformed to poly-crystalline calcium oxide. Copyright © 2014 Elsevier Ltd. All rights reserved.

Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania Huxleyi (haptophyta) and reflect specialization to different ecological niches

NARCIS (Netherlands)

Rokitta, S.D.; Nooijer, L.J. de; Trimborn, S.; de Vargas, C.; Rost, B.; John, U.

2011-01-01

Coccolithophores, especially the abundant, cosmopolitan species Emiliania huxleyi (Lohmann) W. W. Hay et H. P. Mohler, are one of the main driving forces of the oceanic carbonate pump and contribute significantly to global carbon cycling, due to their ability to calcify. A recent study

Cellular pH measurements in Emiliania huxleyi reveal pronounced membrane proton permeability.

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Suffrian, K; Schulz, K G; Gutowska, M A; Riebesell, U; Bleich, M

2011-05-01

• To understand the influence of changing surface ocean pH and carbonate chemistry on the coccolithophore Emiliania huxleyi, it is necessary to characterize mechanisms involved in pH homeostasis and ion transport. • Here, we measured effects of changes in seawater carbonate chemistry on the fluorescence emission ratio of BCECF (2',7'-bis-(2-carboxyethyl)-5-(and-6)-carboxyfluorescein) as a measure of intracellular pH (pH(i)). Out of equilibrium solutions were used to differentiate between membrane permeation pathways for H(+), CO(2) and HCO(3)(-). • Changes in fluorescence ratio were calibrated in single cells, resulting in a ratio change of 0.78 per pH(i) unit. pH(i) acutely followed the pH of seawater (pH(e)) in a linear fashion between pH(e) values of 6.5 and 9 with a slope of 0.44 per pH(e) unit. pH(i) was nearly insensitive to changes in seawater CO(2) at constant pH(e) and HCO(3)(-). An increase in extracellular HCO(3)(-) resulted in a slight intracellular acidification. In the presence of DIDS (4,4'-diisothiocyanatostilbene-2,2'-disulfonic acid), a broad-spectrum inhibitor of anion exchangers, E. huxleyi acidified irreversibly. DIDS slightly reduced the effect of pH(e) on pH(i). • The data for the first time show the occurrence of a proton permeation pathway in E. huxleyi plasma membrane. pH(i) homeostasis involves a DIDS-sensitive mechanism. © 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.

Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach.

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Knies, David; Wittmüß, Philipp; Appel, Sebastian; Sawodny, Oliver; Ederer, Michael; Feuer, Ronny

2015-10-28

The coccolithophorid unicellular alga Emiliania huxleyi is known to form large blooms, which have a strong effect on the marine carbon cycle. As a photosynthetic organism, it is subjected to a circadian rhythm due to the changing light conditions throughout the day. For a better understanding of the metabolic processes under these periodically-changing environmental conditions, a genome-scale model based on a genome reconstruction of the E. huxleyi strain CCMP 1516 was created. It comprises 410 reactions and 363 metabolites. Biomass composition is variable based on the differentiation into functional biomass components and storage metabolites. The model is analyzed with a flux balance analysis approach called diurnal flux balance analysis (diuFBA) that was designed for organisms with a circadian rhythm. It allows storage metabolites to accumulate or be consumed over the diurnal cycle, while keeping the structure of a classical FBA problem. A feature of this approach is that the production and consumption of storage metabolites is not defined externally via the biomass composition, but the result of optimal resource management adapted to the diurnally-changing environmental conditions. The model in combination with this approach is able to simulate the variable biomass composition during the diurnal cycle in proximity to literature data.

Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach

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David Knies

2015-10-01

Full Text Available The coccolithophorid unicellular alga Emiliania huxleyi is known to form large blooms, which have a strong effect on the marine carbon cycle. As a photosynthetic organism, it is subjected to a circadian rhythm due to the changing light conditions throughout the day. For a better understanding of the metabolic processes under these periodically-changing environmental conditions, a genome-scale model based on a genome reconstruction of the E. huxleyi strain CCMP 1516 was created. It comprises 410 reactions and 363 metabolites. Biomass composition is variable based on the differentiation into functional biomass components and storage metabolites. The model is analyzed with a flux balance analysis approach called diurnal flux balance analysis (diuFBA that was designed for organisms with a circadian rhythm. It allows storage metabolites to accumulate or be consumed over the diurnal cycle, while keeping the structure of a classical FBA problem. A feature of this approach is that the production and consumption of storage metabolites is not defined externally via the biomass composition, but the result of optimal resource management adapted to the diurnally-changing environmental conditions. The model in combination with this approach is able to simulate the variable biomass composition during the diurnal cycle in proximity to literature data.

Dissecting the impact of CO2 and pH on the mechanisms of photosynthesis and calcification in the coccolithophore Emiliania huxleyi.

Science.gov (United States)

Bach, Lennart T; Mackinder, Luke C M; Schulz, Kai G; Wheeler, Glen; Schroeder, Declan C; Brownlee, Colin; Riebesell, Ulf

2013-07-01

Coccolithophores are important calcifying phytoplankton predicted to be impacted by changes in ocean carbonate chemistry caused by the absorption of anthropogenic CO2 . However, it is difficult to disentangle the effects of the simultaneously changing carbonate system parameters (CO2 , bicarbonate, carbonate and protons) on the physiological responses to elevated CO2 . Here, we adopted a multifactorial approach at constant pH or CO2 whilst varying dissolved inorganic carbon (DIC) to determine physiological and transcriptional responses to individual carbonate system parameters. We show that Emiliania huxleyi is sensitive to low CO2 (growth and photosynthesis) and low bicarbonate (calcification) as well as low pH beyond a limited tolerance range, but is much less sensitive to elevated CO2 and bicarbonate. Multiple up-regulated genes at low DIC bear the hallmarks of a carbon-concentrating mechanism (CCM) that is responsive to CO2 and bicarbonate but not to pH. Emiliania huxleyi appears to have evolved mechanisms to respond to limiting rather than elevated CO2 . Calcification does not function as a CCM, but is inhibited at low DIC to allow the redistribution of DIC from calcification to photosynthesis. The presented data provides a significant step in understanding how E. huxleyi will respond to changing carbonate chemistry at a cellular level. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

The effect of visible light stress on chemical signaling in two life stages of Emiliania huxleyi

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Valentin-Alvarado, L.; Cooney, E.; Bright, K.; Strom, S.

2016-02-01

The cosmopolitan marine phytoplankton species Emiliania huxleyi presents a digenetic heteromorphic life cycle, with the non-motile diploid phase bearing coccoliths and the flagellated haploid phase being non-calcified. E. huxleyi contains high concentrations of dimethylsulphoniopropionate (DMSP), the precursor of dimethylsulphide (DMS). DMSP is a multifactorial compound; it acts as a compatible solute in cell metabolism and as a chemical signal influencing bacterial and protist behavior. In the atmosphere DMS enhances cloud formation influencing climate. However, little has been documented on E. huxleyi chemical signal responses to high light stress, and how this relates to the heteromorphic life cycle. To this end, low light acclimated cultures of both haploid and diploid E. huxleyi were exposed to high light for 2 hr and allowed to recover in low light for 2 hr. During and after these treatments, growth, photosynthetic efficiency (Fv/Fm), DMSP (intracellular and released) and cell chlorophyll content were measured. Our preliminary results suggest that presence of high light decreased Fv/Fm to a greater extent in haploid than in diploid (calcified) cells, while recovery of Fv/Fm was rapid in both life stages. The chlorophyll content and intracellular DMSP was not different in both life stages. However, the dissolved DMSP increased after light stress in diploid cells suggesting a possible advantage as antioxidant protection or another cellular function, such as grazing protection in this life stage.

Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi

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G. M. Weiss

2017-12-01

Full Text Available Over the last decade, hydrogen isotopes of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using δDC37 to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity under low-light conditions. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high- and low-light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the use of hydrogen isotope fractionation as a paleosalinity proxy.

Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi

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Weiss, Gabriella M.; Pfannerstill, Eva Y.; Schouten, Stefan; Sinninghe Damsté, Jaap S.; van der Meer, Marcel T. J.

2017-12-01

Over the last decade, hydrogen isotopes of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using δDC37 to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity under low-light conditions. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high- and low-light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the use of hydrogen isotope fractionation as a paleosalinity proxy.

Functional genetic divergence in high CO2 adapted Emiliania huxleyi populations.

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Lohbeck, Kai T; Riebesell, Ulf; Collins, Sinéad; Reusch, Thorsten B H

2013-07-01

Predicting the impacts of environmental change on marine organisms, food webs, and biogeochemical cycles presently relies almost exclusively on short-term physiological studies, while the possibility of adaptive evolution is often ignored. Here, we assess adaptive evolution in the coccolithophore Emiliania huxleyi, a well-established model species in biological oceanography, in response to ocean acidification. We previously demonstrated that this globally important marine phytoplankton species adapts within 500 generations to elevated CO2 . After 750 and 1000 generations, no further fitness increase occurred, and we observed phenotypic convergence between replicate populations. We then exposed adapted populations to two novel environments to investigate whether or not the underlying basis for high CO2 -adaptation involves functional genetic divergence, assuming that different novel mutations become apparent via divergent pleiotropic effects. The novel environment "high light" did not reveal such genetic divergence whereas growth in a low-salinity environment revealed strong pleiotropic effects in high CO2 adapted populations, indicating divergent genetic bases for adaptation to high CO2 . This suggests that pleiotropy plays an important role in adaptation of natural E. huxleyi populations to ocean acidification. Our study highlights the potential mutual benefits for oceanography and evolutionary biology of using ecologically important marine phytoplankton for microbial evolution experiments. © 2012 The Author(s). Evolution © 2012 The Society for the Study of Evolution.

ASSESSING THE ROLE OF CASPASE ACTIVITY AND METACASPASE EXPRESSION ON VIRAL SUSCEPTIBILITY OF THE COCCOLITHOPHORE, EMILIANIA HUXLEYI (HAPTOPHYTA).

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Bidle, Kay D; Kwityn, Clifford J

2012-10-01

As part of their strategy to infect the globally important coccolithophore, Emiliania huxleyi (Lohmann) W.W. Hay & H.P. Mohler, Coccolithoviruses trigger and regulate the host's programmed cell death (PCD) machinery during lytic infection. The induction and recruitment of host metacaspases, specialized, ancestral death proteases that facilitate viral lysis, suggests they may be important subcellular determinants to infection. We examined the "basal" levels and patterns of caspase activity and metacaspase expression in exponentially growing resistant and sensitive E. huxleyi strains and linked them with susceptibility to E. huxleyi virus 1 (EhV1). Resistant E. huxleyi strains were consistently characterized by low caspase specific activity and a relatively simple metacaspase expression profile. In contrast, sensitive E. huxleyi strains had markedly elevated caspase specific activity and consistently expressed more diverse metacaspase proteins. Using pooled data sets from triplicate experiments, we observed statistically significant linear correlations between infectivity, caspase activity, and metacaspase expression, with each strain forming distinct clusters, within a gradient in viral susceptibility. At the same time, we observed positive correlations between the expression of a subset of metacaspase proteins and lower susceptibility, suggestive of potential protective roles. Our findings implicate the importance of subtle differences in the basal physiological regulation of the PCD machinery to viral resistance or sensitivity and cell fate. © 2012 Phycological Society of America.

The 24 hour recovery kinetics from n starvation in Phaeodactylum tricornutum and Emiliania huxleyi.

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Zhao, Yan; Wang, You; Quigg, Antonietta

2015-08-01

The response of N (nitrate) starved cells of the diatom Phaeodactylum tricornutum and the coccolithophore Emiliania huxleyi to a pulse of new N were measured to investigate rapid cellular and photosynthetic recovery kinetics. The changes of multiple parameters were followed over 24 h. In P. tricornutum, the recovery of Fv /Fm (the maximum quantum yield of PS II) and σPSII (the functional absorption cross-section for PSII) started within the first hour, much earlier than other parameters. Cellular pigments did not recover during the 24 h but the chlorophyll (chl) a/carotenoid ratios increased to levels measured in the controls. Cell division was independent of the recovery of chl a. In E. huxleyi, the recovery of Fv /Fm and σPSII started after an hour, synchronous with the increase in cellular organic N and chl a with pigments fully recovered within 14 h. P. tricornutum prioritized the recovery of its photosynthetic functions and cell divisions while E. huxleyi did not follow this pattern. We hypothesize that the different recovery strategies between the two species allow P. tricornutum to be more competitive when N pulses are introduced into N-limited water while E. huxleyi is adapted to N scarce waters where such pulses are infrequent. These findings are consistent with successional patterns observed in coastal environments. This is one of only a few studies exploring recovery kinetics of cellular functions and photosynthesis after nitrogen stress in phytoplankton. Our results can be used to enhance ecological models linking phytoplankton traits to species diversity and community structure. © 2015 Phycological Society of America.

Induction of Phase Variation Events in the Life Cycle of the Marine Coccolithophorid Emiliania huxleyi

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Laguna, Richard; Romo, Jesus; Read, Betsy A.; Wahlund, Thomas M.

2001-01-01

Emiliania huxleyi is a unicellular marine alga that is considered to be the world's major producer of calcite. The life cycle of this alga is complex and is distinguished by its ability to synthesize exquisitely sculptured calcium carbonate cell coverings known as coccoliths. These structures have been targeted by materials scientists for applications relating to the chemistry of biomedical materials, robust membranes for high-temperature separation technology, lightweight ceramics, and semiconductor design. To date, however, the molecular and biochemical events controlling coccolith production have not been determined. In addition, little is known about the life cycle of E. huxleyi and the environmental and physiological signals triggering phase switching between the diploid and haploid life cycle stages. We have developed laboratory methods for inducing phase variation between the haploid (S-cell) and diploid (C-cell) life cycle stages of E. huxleyi. Plating E. huxleyi C cells on solid media was shown to induce phase switching from the C-cell to the S-cell life cycle stage, the latter of which has been maintained for over 2 years under these conditions. Pure cultures of S cells were obtained for the first time. Laboratory conditions for inducing phase switching from the haploid stage to the diploid stage were also established. Regeneration of the C-cell stage from pure cultures of S cells followed a predictable pattern involving formation of large aggregations of S cells and the subsequent production of cultures consisting predominantly of diploid C cells. These results demonstrate the ability to manipulate the life cycle of E. huxleyi under controlled laboratory conditions, providing us with powerful tools for the development of genetic techniques for analysis of coccolithogenesis and for investigating the complex life cycle of this important marine alga. PMID:11525973

Intragenomic spread of plastid-targeting presequences in the coccolithophore Emiliania huxleyi.

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Burki, Fabien; Hirakawa, Yoshihisa; Keeling, Patrick J

2012-09-01

Nucleus-encoded plastid-targeted proteins of photosynthetic organisms are generally equipped with an N-terminal presequence required for crossing the plastid membranes. The acquisition of these presequences played a fundamental role in the establishment of plastids. Here, we report a unique case of two non-homologous proteins possessing completely identical presequences consisting of a bipartite plastid-targeting signal in the coccolithophore Emiliania huxleyi. We further show that this presequence is highly conserved in five additional proteins that did not originally function in plastids, representing de novo plastid acquisitions. These are among the most recent cases of presequence spreading from gene to gene and shed light on important evolutionary processes that have been usually erased by the ancient history of plastid evolution. We propose a mechanism of acquisition involving genomic duplications and gene replacement through non-homologous recombination that may have played a more general role for equipping proteins with targeting information.

Release and Consumption of DMSP from Emiliania Huxleyi during grazing by Oxyrrhis Marina

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Wolfe, Gordon V.; Sherr, Evelyn B.; Sherr, Barry F.

1994-01-01

Degradation and release to solution of intracellular dimethylsulfoniopropionate (DMSP) from Emiliania huxleyi 370 was observed during grazing by the heterotrophic dinoflagellate Oxyrrhis marina in 24 h bottle incubations. Between 30 and 70% of the lost algal DMSP was metabolized by the grazers without production of dimethylsulfide (DMS) when grazer densities were 150 to 450/ml. The rest was released to solution and about 30% was converted to DMS by bacteria associated with the grazer culture. These experiments demonstrate that grazing by herbivorous protists may be an important sink for DMSP in marine waters, removing a potential source of DMS. Microzooplankton grazing may also indirectly increase the production of DMS by transferring algal DMSP to the dissolved pool, making it available for bacterial metabolism.

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

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2009-01-01

Background Eukaryotes are classified as either haplontic, diplontic, or haplo-diplontic, depending on which ploidy levels undergo mitotic cell division in the life cycle. Emiliania huxleyi is one of the most abundant phytoplankton species in the ocean, playing an important role in global carbon fluxes, and represents haptophytes, an enigmatic group of unicellular organisms that diverged early in eukaryotic evolution. This species is haplo-diplontic. Little is known about the haploid cells, but they have been hypothesized to allow persistence of the species between the yearly blooms of diploid cells. We sequenced over 38,000 expressed sequence tags from haploid and diploid E. huxleyi normalized cDNA libraries to identify genes involved in important processes specific to each life phase (2N calcification or 1N motility), and to better understand the haploid phase of this prominent haplo-diplontic organism. Results The haploid and diploid transcriptomes showed a dramatic differentiation, with approximately 20% greater transcriptome richness in diploid cells than in haploid cells and only ≤ 50% of transcripts estimated to be common between the two phases. The major functional category of transcripts differentiating haploids included signal transduction and motility genes. Diploid-specific transcripts included Ca2+, H+, and HCO3- pumps. Potential factors differentiating the transcriptomes included haploid-specific Myb transcription factor homologs and an unusual diploid-specific histone H4 homolog. Conclusions This study permitted the identification of genes likely involved in diploid-specific biomineralization, haploid-specific motility, and transcriptional control. Greater transcriptome richness in diploid cells suggests they may be more versatile for exploiting a diversity of rich environments whereas haploid cells are intrinsically more streamlined. PMID:19832986

Increased CO2 and the effect of pH on growth and calcification of Pleurochrysis carterae and Emiliania huxleyi (Haptophyta) in semicontinuous cultures.

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Moheimani, Navid R; Borowitzka, Michael A

2011-05-01

The effects of changes in CO(2) and pH on biomass productivity and carbon uptake of Pleurochrysis carterae and Emiliania huxleyi in open raceway ponds and a plate photobioreactor were studied. The pH of P. carterae cultures increased during day and decreased at night, whereas the pH of E. huxleyi cultures showed no significant diurnal changes. P. carterae coccolith production occurs during the dark period, whereas in E. huxleyi, coccolith production is mainly during the day. Addition of CO(2) at constant pH (pH-stat) resulted in an increase in P. carterae biomass and coccolith productivity, while CO(2) addition lowered E. huxleyi biomass and coccolith production. Neither of these algae could grow at less than pH 7.5. Species-specific diurnal pH and pCO(2) variations could be indicative of significant differences in carbon uptake between these two species. While E. huxleyi has been suggested to be predominantly a bicarbonate user, our results indicate that P. carterae may be using CO(2) as the main C source for photosynthesis and calcification.

Environmental carbonate chemistry selects for phenotype of recently isolated strains of Emiliania huxleyi

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Rickaby, Rosalind E. M.; Hermoso, Michaël; Lee, Renee B. Y.; Rae, Benjamin D.; Heureux, Ana M. C.; Balestreri, Cecilia; Chakravarti, Leela; Schroeder, Declan C.; Brownlee, Colin

2016-05-01

Coccolithophorid algae, particularly Emiliania huxleyi, are prolific biomineralisers that, under many conditions, dominate communities of marine eukaryotic plankton. Their ability to photosynthesise and form calcified scales (coccoliths) has placed them in a unique position in the global carbon cycle. Contrasting reports have been made with regards to the response of E. huxleyi to ocean acidification. Therefore, there is a pressing need to further determine the fate of this key organism in a rising CO2 world. In this paper, we investigate the phenotype of newly isolated, genetically diverse, strains of E. huxleyi from UK Ocean Acidification Research Programme (UKOA) cruises around the British Isles, the Arctic, and the Southern Ocean. We find a continuum of diversity amongst the physiological and photosynthetic parameters of different strains of E. huxleyi morphotype A under uniform, ambient conditions imposed in the laboratory. This physiology is best explained by adaptation to carbonate chemistry in the former habitat rather than being prescribed by genetic fingerprints such as the coccolithophore morphology motif (CMM). To a first order, the photosynthetic capacity of each strain is a function of both aqueous CO2 availability, and calcification rate, suggestive of a link between carbon concentrating ability and calcification. The calcification rate of each strain is related linearly to the natural environmental [CO32-] at the site of isolation, but a few exceptional strains display low calcification rates at the highest [CO32-] when calcification is limited by low CO2 availability and/or a lack of a carbon concentrating mechanism. We present O2-electrode measurements alongside coccolith oxygen isotopic composition and the uronic acid content (UAC) of the coccolith associated polysaccharide (CAP), that act as indirect tools to show the differing carbon concentrating ability of the strains. The environmental selection revealed amongst our recently isolated strain

Gene expression changes in the coccolithophore Emiliania huxleyi after 500 generations of selection to ocean acidification.

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Lohbeck, Kai T; Riebesell, Ulf; Reusch, Thorsten B H

2014-07-07

Coccolithophores are unicellular marine algae that produce biogenic calcite scales and substantially contribute to marine primary production and carbon export to the deep ocean. Ongoing ocean acidification particularly impairs calcifying organisms, mostly resulting in decreased growth and calcification. Recent studies revealed that the immediate physiological response in the coccolithophore Emiliania huxleyi to ocean acidification may be partially compensated by evolutionary adaptation, yet the underlying molecular mechanisms are currently unknown. Here, we report on the expression levels of 10 candidate genes putatively relevant to pH regulation, carbon transport, calcification and photosynthesis in E. huxleyi populations short-term exposed to ocean acidification conditions after acclimation (physiological response) and after 500 generations of high CO2 adaptation (adaptive response). The physiological response revealed downregulation of candidate genes, well reflecting the concomitant decrease of growth and calcification. In the adaptive response, putative pH regulation and carbon transport genes were up-regulated, matching partial restoration of growth and calcification in high CO2-adapted populations. Adaptation to ocean acidification in E. huxleyi likely involved improved cellular pH regulation, presumably indirectly affecting calcification. Adaptive evolution may thus have the potential to partially restore cellular pH regulatory capacity and thereby mitigate adverse effects of ocean acidification. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Population-specific responses in physiological rates of Emiliania huxleyi to a broad CO2 range

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Y. Zhang

2018-06-01

Full Text Available Although coccolithophore physiological responses to CO2-induced changes in seawater carbonate chemistry have been widely studied in the past, there is limited knowledge on the variability of physiological responses between populations from different areas. In the present study, we investigated the specific responses of growth, particulate organic (POC and inorganic carbon (PIC production rates of three populations of the coccolithophore Emiliania huxleyi from three regions in the North Atlantic Ocean (Azores: six strains, Canary Islands: five strains, and Norwegian coast near Bergen: six strains to a CO2 partial pressure (pCO2 range from 120 to 2630 µatm. Physiological rates of each population and individual strain increased with rising pCO2 levels, reached a maximum and declined thereafter. Optimal pCO2 for growth, POC production rates, and tolerance to low pH (i.e., high proton concentration was significantly higher in an E. huxleyi population isolated from the Norwegian coast than in those isolated near the Azores and Canary Islands. This may be due to the large environmental variability including large pCO2 and pH fluctuations in coastal waters off Bergen compared to the rather stable oceanic conditions at the other two sites. Maximum growth and POC production rates of the Azores and Bergen populations were similar and significantly higher than that of the Canary Islands population. This pattern could be driven by temperature–CO2 interactions where the chosen incubation temperature (16 °C was slightly below what strains isolated near the Canary Islands normally experience. Our results indicate adaptation of E. huxleyi to their local environmental conditions and the existence of distinct E. huxleyi populations. Within each population, different growth, POC, and PIC production rates at different pCO2 levels indicated strain-specific phenotypic plasticity. Accounting for this variability is important to understand how or whether E. huxleyi

Pan genome of the phytoplankton Emiliania underpins its global distribution.

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Read, Betsy A; Kegel, Jessica; Klute, Mary J; Kuo, Alan; Lefebvre, Stephane C; Maumus, Florian; Mayer, Christoph; Miller, John; Monier, Adam; Salamov, Asaf; Young, Jeremy; Aguilar, Maria; Claverie, Jean-Michel; Frickenhaus, Stephan; Gonzalez, Karina; Herman, Emily K; Lin, Yao-Cheng; Napier, Johnathan; Ogata, Hiroyuki; Sarno, Analissa F; Shmutz, Jeremy; Schroeder, Declan; de Vargas, Colomban; Verret, Frederic; von Dassow, Peter; Valentin, Klaus; Van de Peer, Yves; Wheeler, Glen; Dacks, Joel B; Delwiche, Charles F; Dyhrman, Sonya T; Glöckner, Gernot; John, Uwe; Richards, Thomas; Worden, Alexandra Z; Zhang, Xiaoyu; Grigoriev, Igor V

2013-07-11

Coccolithophores have influenced the global climate for over 200 million years. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space. Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.

Responses of the Emiliania huxleyi proteome to ocean acidification.

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Jones, Bethan M; Iglesias-Rodriguez, M Debora; Skipp, Paul J; Edwards, Richard J; Greaves, Mervyn J; Young, Jeremy R; Elderfield, Henry; O'Connor, C David

2013-01-01

Ocean acidification due to rising atmospheric CO2 is expected to affect the physiology of important calcifying marine organisms, but the nature and magnitude of change is yet to be established. In coccolithophores, different species and strains display varying calcification responses to ocean acidification, but the underlying biochemical properties remain unknown. We employed an approach combining tandem mass-spectrometry with isobaric tagging (iTRAQ) and multiple database searching to identify proteins that were differentially expressed in cells of the marine coccolithophore species Emiliania huxleyi (strain NZEH) between two CO2 conditions: 395 (∼current day) and ∼1340 p.p.m.v. CO2. Cells exposed to the higher CO2 condition contained more cellular particulate inorganic carbon (CaCO3) and particulate organic nitrogen and carbon than those maintained in present-day conditions. These results are linked with the observation that cells grew slower under elevated CO2, indicating cell cycle disruption. Under high CO2 conditions, coccospheres were larger and cells possessed bigger coccoliths that did not show any signs of malformation compared to those from cells grown under present-day CO2 levels. No differences in calcification rate, particulate organic carbon production or cellular organic carbon: nitrogen ratios were observed. Results were not related to nutrient limitation or acclimation status of cells. At least 46 homologous protein groups from a variety of functional processes were quantified in these experiments, of which four (histones H2A, H3, H4 and a chloroplastic 30S ribosomal protein S7) showed down-regulation in all replicates exposed to high CO2, perhaps reflecting the decrease in growth rate. We present evidence of cellular stress responses but proteins associated with many key metabolic processes remained unaltered. Our results therefore suggest that this E. huxleyi strain possesses some acclimation mechanisms to tolerate future CO2 scenarios

Variability in the organic ligands released by Emiliania huxleyi under simulated ocean acidification conditions

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Guillermo Samperio-Ramos

2017-12-01

Full Text Available The variability in the extracellular release of organic ligands by Emiliania huxleyi under four different pCO2 scenarios (225, 350, 600 and 900 μatm, was determined. Growth in the batch cultures was promoted by enriching them only with major nutrients and low iron concentrations. No chelating agents were added to control metal speciation. During the initial (IP, exponential (EP and steady (SP phases, extracellular release rates, normalized per cell and day, of dissolved organic carbon (DOCER, phenolic compounds (PhCER, dissolved combined carbohydrates (DCCHOER and dissolved uronic acids (DUAER in the exudates were determined. The growth rate decreased in the highest CO2 treatment during the IP (＜48 h, but later increased when the exposure was longer (more than 6 days. DOCER did not increase significantly with high pCO2. Although no relationship was observed between DCCHOER and the CO2 conditions, DCCHO was a substantial fraction of the freshly released organic material, accounting for 18% to 37%, in EP, and 14% to 23%, in SP, of the DOC produced. Growth of E. huxleyi induced a strong response in the PhCER and DUAER. While in EP, PhCER were no detected, the DUAER remained almost constant for all CO2 treatments. Increases in the extracellular release of these organic ligands during SP were most pronounced under high pCO2 conditions. Our results imply that, during the final growth stage of E. huxleyi, elevated CO2 conditions will increase its excretion of acid polysaccharides and phenolic compounds, which may affect the biogeochemical behavior of metals in seawater.

Indole-3-Acetic Acid Is Produced by Emiliania huxleyi Coccolith-Bearing Cells and Triggers a Physiological Response in Bald Cells.

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Labeeuw, Leen; Khey, Joleen; Bramucci, Anna R; Atwal, Harjot; de la Mata, A Paulina; Harynuk, James; Case, Rebecca J

2016-01-01

Indole-3-acetic acid (IAA) is an auxin produced by terrestrial plants which influences development through a variety of cellular mechanisms, such as altering cell orientation, organ development, fertility, and cell elongation. IAA is also produced by bacterial pathogens and symbionts of plants and algae, allowing them to manipulate growth and development of their host. They do so by either producing excess exogenous IAA or hijacking the IAA biosynthesis pathway of their host. The endogenous production of IAA by algae remains contentious. Using Emiliania huxleyi, a globally abundant marine haptophyte, we investigated the presence and potential role of IAA in algae. Homologs of genes involved in several tryptophan-dependent IAA biosynthesis pathways were identified in E. huxleyi. This suggests that this haptophyte can synthesize IAA using various precursors derived from tryptophan. Addition of L-tryptophan to E. huxleyi stimulated IAA production, which could be detected using Salkowski's reagent and GC × GC-TOFMS in the C cell type (coccolith bearing), but not in the N cell type (bald). Various concentrations of IAA were exogenously added to these two cell types to identify a physiological response in E. huxleyi. The N cell type, which did not produce IAA, was more sensitive to it, showing an increased variation in cell size, membrane permeability, and a corresponding increase in the photosynthetic potential quantum yield of Photosystem II (PSII). A roseobacter (bacteria commonly associated with E. huxleyi) Ruegeria sp. R11, previously shown to produce IAA, was co-cultured with E. huxleyi C and N cells. IAA could not be detected from these co-cultures, and even when stimulated by addition of L-tryptophan, they produced less IAA than axenic C type culture similarly induced. This suggests that IAA plays a novel role signaling between different E. huxleyi cell types, rather than between a bacteria and its algal host.

Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte-stramenopile association and a chimeric haptophyte nuclear genome.

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Miller, John J; Delwiche, Charles F

2015-06-01

Emiliania huxleyi is a haptophyte alga of uncertain phylogenetic affinity containing a secondarily derived, chlorophyll c containing plastid. We sought to characterize its relationships with other taxa by quantifying the bipartitions in which it was included from a group of single protein phylogenetic trees in a way that allowed for variation in taxonomic content and accounted for paralogous sequences. The largest number of sequences supported a phylogenetic relationship of E. huxleyi with the stramenopiles, in particular Aureococcus anophagefferens. Far fewer nuclear sequences gave strong support to the placement of this coccolithophorid with the cryptophyte, Guillardia theta. The majority of the sequences that did support this relationship did not have plastid related functions. These results suggest that the haptophytes may be more closely allied with the heterokonts than with the cryptophytes. Another small set of genes associated E. huxleyi with the Viridiplantae with high support. While these genes could have been acquired with a plastid, the lack of plastid related functions among the proteins for which they code and the lack of other organisms with chlorophyll c containing plastids within these bipartitions suggests other explanations may be possible. This study also identified several genes that may have been transferred from the haptophyte lineage to the dinoflagellates Karenia brevis and Karlodinium veneficum as a result of their haptophyte derived plastid, including some with non-photosynthetic functions. Published by Elsevier B.V.

The effect of nitrate and phosphate availability on Emiliania huxleyi (NZEH) physiology under different CO2 scenarios.

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Rouco, Mónica; Branson, Oscar; Lebrato, Mario; Iglesias-Rodríguez, M Débora

2013-01-01

Growth and calcification of the marine coccolithophorid Emiliania huxleyi is affected by ocean acidification and macronutrients limitation and its response varies between strains. Here we investigated the physiological performance of a highly calcified E. huxleyi strain, NZEH, in a multiparametric experiment. Cells were exposed to different CO2 levels (ranging from 250 to 1314 μatm) under three nutrient conditions [nutrient replete (R), nitrate limited (-N), and phosphate limited (-P)]. We focused on calcite and organic carbon quotas and on nitrate and phosphate utilization by analyzing the activity of nitrate reductase (NRase) and alkaline phosphatase (APase), respectively. Particulate inorganic (PIC) and organic (POC) carbon quotas increased with increasing CO2 under R conditions but a different pattern was observed under nutrient limitation. The PIC:POC ratio decreased with increasing CO2 in nutrient limited cultures. Coccolith length increased with CO2 under all nutrient conditions but the coccosphere volume varied depending on the nutrient treatment. Maximum APase activity was found at 561 μatm of CO2 (pH 7.92) in -P cultures and in R conditions, NRase activity increased linearly with CO2. These results suggest that E. huxleyi's competitive ability for nutrient uptake might be altered in future high-CO2 oceans. The combined dataset will be useful in model parameterizations of the carbon cycle and ocean acidification.

Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta).

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Bendif, El Mahdi; Probert, Ian; Carmichael, Margaux; Romac, Sarah; Hagino, Kyoko; de Vargas, Colomban

2014-02-01

Emiliania huxleyi and Gephyrocapsa oceanica are abundant coccolithophore morpho-species that play key roles in ocean carbon cycling due to their importance as both primary producers and cal-cifiers. Global change processes such as ocean acidification impact these key calcifying species. The physiology of E. huxleyi, a developing model species, has been widely studied, but its genetic delineation from G. oceanica remains unclear due to a lack of resolution in classical genetic markers. Using nuclear (18S rDNA and 28S rDNA), mitochondrial (cox1, cox2, cox3, rpl16, and dam), and plastidial (16S rDNA, rbcL, tufA, and petA) DNA markers from 99 E. huxleyi and 44 G. oceanica strains, we conducted a multigene/multistrain survey to compare the suitability of different markers for resolving phylogenetic patterns within and between these two morpho-species. The nuclear genes tested did not provide sufficient resolution to discriminate between the two morpho-species that diverged only 291Kya. Typical patterns of incomplete lineage sorting were generated in phylogenetic analyses using plastidial genes. In contrast, full morpho-species delineation was achieved with mitochondrial markers and common intra-morpho-species phylogenetic patterns were observed despite differing rates of DNA substitution. Mitochondrial genes are thus promising barcodes for distinguishing these coccolithophore morpho-species, in particular in the context of environmental monitoring. © 2013 Phycological Society of America.

TRANSCRIPTOME ANALYSES REVEAL DIFFERENTIAL GENE EXPRESSION PATTERNS BETWEEN THE LIFE-CYCLE STAGES OF EMILIANIA HUXLEYI (HAPTOPHYTA) AND REFLECT SPECIALIZATION TO DIFFERENT ECOLOGICAL NICHES(1).

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Rokitta, Sebastian D; de Nooijer, Lennart J; Trimborn, Scarlett; de Vargas, Colomban; Rost, Björn; John, Uwe

2011-08-01

Coccolithophores, especially the abundant, cosmopolitan species Emiliania huxleyi (Lohmann) W. W. Hay et H. P. Mohler, are one of the main driving forces of the oceanic carbonate pump and contribute significantly to global carbon cycling, due to their ability to calcify. A recent study indicates that termination of diploid blooms by viral infection induces life-cycle transition, and speculation has arisen about the role of the haploid, noncalcifying stage in coccolithophore ecology. To explore gene expression patterns in both life-cycle stages, haploid and diploid cells of E. huxleyi (RCC 1217 and RCC 1216) were acclimated to limiting and saturating photon flux densities. Transcriptome analyses were performed to assess differential genomic expression related to different ploidy levels and acclimation light intensities. Analyses indicated that life-cycle stages exhibit different properties of regulating genome expression (e.g., pronounced gene activation and gene silencing in the diploid stage), proteome maintenance (e.g., increased turnover of proteins in the haploid stage), as well as metabolic processing (e.g., pronounced primary metabolism and motility in the haploid stage and calcification in the diploid stage). Furthermore, higher abundances of transcripts related to endocytotic and digestive machinery were observed in the diploid stage. A qualitative feeding experiment indicated that both life-cycle stages are capable of particle uptake (0.5 μm diameter) in late-stationary growth phase. Results showed that the two life-cycle stages represent functionally distinct entities that are evolutionarily shaped to thrive in the environment they typically inhabit. © 2011 Phycological Society of America.

Simultaneous shifts in elemental stoichiometry and fatty acids of Emiliania huxleyi in response to environmental changes

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Bi, Rong; Ismar, Stefanie M. H.; Sommer, Ulrich; Zhao, Meixun

2018-02-01

Climate-driven changes in environmental conditions have significant and complex effects on marine ecosystems. Variability in phytoplankton elements and biochemicals can be important for global ocean biogeochemistry and ecological functions, while there is currently limited understanding on how elements and biochemicals respond to the changing environments in key coccolithophore species such as Emiliania huxleyi. We investigated responses of elemental stoichiometry and fatty acids (FAs) in a strain of E. huxleyi under three temperatures (12, 18 and 24 °C), three N : P supply ratios (molar ratios 10:1, 24:1 and 63:1) and two pCO2 levels (560 and 2400 µatm). Overall, C : N : P stoichiometry showed the most pronounced response to N : P supply ratios, with high ratios of particulate organic carbon vs. particulate organic nitrogen (POC : PON) and low ratios of PON vs. particulate organic phosphorus (PON : POP) in low-N media, and high POC : POP and PON : POP in low-P media. The ratio of particulate inorganic carbon vs. POC (PIC : POC) and polyunsaturated fatty acid proportions strongly responded to temperature and pCO2, both being lower under high pCO2 and higher with warming. We observed synergistic interactions between warming and nutrient deficiency (and high pCO2) on elemental cellular contents and docosahexaenoic acid (DHA) proportion in most cases, indicating the enhanced effect of warming under nutrient deficiency (and high pCO2). Our results suggest differential sensitivity of elements and FAs to the changes in temperature, nutrient availability and pCO2 in E. huxleyi, which is to some extent unique compared to non-calcifying algal classes. Thus, simultaneous changes of elements and FAs should be considered when predicting future roles of E. huxleyi in the biotic-mediated connection between biogeochemical cycles, ecological functions and climate change.

Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol.

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Malitsky, Sergey; Ziv, Carmit; Rosenwasser, Shilo; Zheng, Shuning; Schatz, Daniella; Porat, Ziv; Ben-Dor, Shifra; Aharoni, Asaph; Vardi, Assaf

2016-04-01

Viruses that infect marine photosynthetic microorganisms are major ecological and evolutionary drivers of microbial food webs, estimated to turn over more than a quarter of the total photosynthetically fixed carbon. Viral infection of the bloom-forming microalga Emiliania huxleyi induces the rapid remodeling of host primary metabolism, targeted towards fatty acid metabolism. We applied a liquid chromatography-mass spectrometry (LC-MS)-based lipidomics approach combined with imaging flow cytometry and gene expression profiling to explore the impact of viral-induced metabolic reprogramming on lipid composition. Lytic viral infection led to remodeling of the cellular lipidome, by predominantly inducing the biosynthesis of highly saturated triacylglycerols (TAGs), coupled with a significant accumulation of neutral lipids within lipid droplets. Furthermore, TAGs were found to be a major component (77%) of the lipidome of isolated virions. Interestingly, viral-induced TAGs were significantly more saturated than TAGs produced under nitrogen starvation. This study highlights TAGs as major products of the viral-induced metabolic reprogramming during the host-virus interaction and indicates a selective mode of membrane recruitment during viral assembly, possibly by budding of the virus from specialized subcellular compartments. These findings provide novel insights into the role of viruses infecting microalgae in regulating metabolism and energy transfer in the marine environment and suggest their possible biotechnological application in biofuel production. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Biodegradation of Emiliania huxleyi Aggregates by natural Prokaryotic Communities under Increasing Hydrostatic Pressure.

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Riou, V.; Para, J.; Garel, M.; Guigue, C.; Al Ali, B.; Santinelli, C.; Lefèvre, D.; Gattuso, J. P.; Goutx, M.; Panagiotopoulos, C.; Beaufort, L.; Jacquet, S.; Le Moigne, F. A. C.; Tachikawa, K.; Tamburini, C.

2016-02-01

Fluxes of particulate organic carbon (POC) and minerals are positively correlated, suggesting that minerals could enhance the flux of POC into the deep ocean. The so called "ballast effect" posits that minerals could increase sinking particle densities and/or protect the organic matter from heterotrophic degradation. Laboratory controlled experiments on coccolithophorid aggregates under atmospheric pressure show that biogenic calcite both increases particle settling velocities and preserves the organic matter. However, such experiments have yet to include genuine prokaryote rates indicators as well as the effect of increasing pressure. Here, we used the PArticle Sinking Simulator (PASS) to investigate the effect of the increasing pressure on the degradation of Emiliania huxleyi (calcifiers) aggregates. Extra care was taken to obtain culture aggregates with low prokaryotic abundance prior to exposure to natural mesopelagic prokaryotic communities. Particulate organic and inorganic carbon and dissolved organic carbon concentrations were monitored along with the lipid and carbohydrate compositions, as well as prokaryotic community abundance and specific diversity. A control experiment, without natural prokaryotic community addition, indicates that the pressure increase did not have any effect on calcite dissolution observed after ten days. In contrast, the addition of natural prokaryotic community accelerates calcite dissolution under conditions of increasing pressure. Prokaryotic community development and the lipid fraction of E. huxleyi particulate organic carbon are enhanced under increasing pressure. These results suggest that hydrostatic pressure denatures the structural integrity of the carbonate skeleton that protects the cellular organic matter.

Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis.

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Rokitta, Sebastian D; Von Dassow, Peter; Rost, Björn; John, Uwe

2014-12-02

Global change will affect patterns of nutrient upwelling in marine environments, potentially becoming even stricter regulators of phytoplankton primary productivity. To better understand phytoplankton nutrient utilization on the subcellular basis, we assessed the transcriptomic responses of the life-cycle stages of the biogeochemically important microalgae Emiliania huxleyi to nitrogen-limitation. Cells grown in batch cultures were harvested at 'early' and 'full' nitrogen-limitation and were compared with non-limited cells. We applied microarray-based transcriptome profilings, covering ~10.000 known E. huxleyi gene models, and screened for expression patterns that indicate the subcellular responses. The diploid life-cycle stage scavenges nitrogen from external organic sources and -like diatoms- uses the ornithine-urea cycle to rapidly turn over cellular nitrogen. The haploid stage reacts similarly, although nitrogen scavenging is less pronounced and lipid oxidation is more prominent. Generally, polyamines and proline appear to constitute major organic pools that back up cellular nitrogen. Both stages induce a malate:quinone-oxidoreductase that efficiently feeds electrons into the respiratory chain and drives ATP generation with reduced respiratory carbon throughput. The use of the ornithine-urea cycle to budget the cellular nitrogen in situations of limitation resembles the responses observed earlier in diatoms. This suggests that underlying biochemical mechanisms are conserved among distant clades of marine phototrophic protists. The ornithine-urea cycle and proline oxidation appear to constitute a sensory-regulatory system that monitors and controls cellular nitrogen budgets under limitation. The similarity between the responses of the life-cycle stages, despite the usage of different genes, also indicates a strong functional consistency in the responses to nitrogen-limitation that appears to be owed to biochemical requirements. The malate

The role of coccoliths in protecting Emiliania huxleyi against stressful light and UV radiation

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Xu, Juntian; Bach, Lennart T.; Schulz, Kai G.; Zhao, Wenyan; Gao, Kunshan; Riebesell, Ulf

2016-08-01

Coccolithophores are a group of phytoplankton species which cover themselves with small scales (coccoliths) made of calcium carbonate (CaCO3). The reason why coccolithophores form these calcite platelets has been a matter of debate for decades but has remained elusive so far. One hypothesis is that they play a role in light or UV protection, especially in surface dwelling species like Emiliania huxleyi, which can tolerate exceptionally high levels of solar radiation. In this study, we tested this hypothesis by culturing a calcified and a naked strain under different light conditions with and without UV radiation. The coccoliths of E. huxleyi reduced the transmission of visible radiation (400-700 nm) by 7.5 %, that of UV-A (315-400 nm) by 14.1 % and that of UV-B (280-315 nm) by 18.4 %. Growth rates of the calcified strain (PML B92/11) were about 2 times higher than those of the naked strain (CCMP 2090) under indoor constant light levels in the absence of UV radiation. When exposed to outdoor conditions (fluctuating sunlight with UV radiation), growth rates of calcified cells were almost 3.5 times higher compared to naked cells. Furthermore, the relative electron transport rate was 114 % higher and non-photochemical quenching (NPQ) was 281 % higher in the calcified compared to the naked strain, implying higher energy transfer associated with higher NPQ in the presence of calcification. When exposed to natural solar radiation including UV radiation, the maximal quantum yield of photosystem II was only slightly reduced in the calcified strain but strongly reduced in the naked strain. Our results reveal an important role of coccoliths in mitigating light and UV stress in E. huxleyi.

Pan Genome of the Phytoplankton Emiliania Underpins its Global Distribution

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Read, Betsy A. [California State Univ. (CalState), San Marcos, CA (United States); Kegel, Jessica [Alfred Wegener Inst. for Polar and Marine Research, Bremerhaven (Germany); Klute, Mary J. [Univ. of Alberta, Edmonton, AB (Canada); Kuo, Alan [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Lefebvre, Stephane C. [J. Craig Venter Inst., San Diego, CA (United States); Maumus, Florian [National Institute of Agricultural Research, Versailles (France); Mayer, Christoph [Alexander Koenig Research Museum, Bonn (Germany); Ruhr Univ., Bochum (Germany); Miller, John [Univ. of Maryland, College Park, MD (United States); Monier, Adam [Monterey Bay Aquarium Research Inst., Moss Landing, CA (United States); Salamov, Asaf [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Young, Jeremy [Univ. College London (United Kingdom); Aguilar, Maria [Univ. of Alberta, Edmonton, AB (Canada); Claverie, Jean-Michel [Aix-Marseille Univ. (France); Frickenhaus, Stephan [Alfred Wegener Inst. for Polar and Marine Research, Bremerhaven (Germany); Univ. of Bremerhaven (Germany); Gonzalez, Karina [Harvard Medical School, Boston, MA (United States); Herman, Emily K. [Univ. of Alberta, Edmonton, AB (Canada); Lin, Yao-Cheng [Ghent Univ. (Belgium); Napier, Johnathan [Rothamstead Research, Harpenden (United Kingdom); Ogata, Hiroyuki [Aix-Marseille Univ. (France); Sarno, Analissa F. [California State Univ. (CalState), San Marcos, CA (United States); Schmutz, Jeremy [USDOE Joint Genome Inst., Walnut Creek, CA (United States); HudsonAlpha Genome Sequencing Center, Huntsville, AL (United States); Schroeder, Declan [Marine Biological Association of the UK, Plymouth (United Kingdom); de Vargas, Columban [CNRS. Univ. Pierre and Marie Curie (France).; Verret, Frederic [Univ. of Essex, Colchester (United Kingdom); von Dassow, Peter [Pontifical Catholic University of Chile, Santiago (Chile); Valentin, Klaus [Alfred Wegener Inst. for Polar and Marine Research, Bremerhaven (Germany); Van de Peer, Yves [Ghent Univ. (Belgium); Wheeler, Glen [Marine Biological Association of the UK, Plymouth (United Kingdom); Plymouth Marine Lab. (United Kingdom); Annotation Consortium, Emiliania huxleyi; Dacks, Joel B. [Univ. of Alberta, Edmonton, AB (Canada); Delwiche, Charles F. [Univ. of Maryland, College Park, MD (United States); Dyhrman, Sonya T. [Woods Hole Oceanographic Inst., MA (United States); Columbia Univ., Palisades, NY (United States); Glockner, Gernot [Univ. of Cologne (Germany); John, Uwe [Alfred Wegener Inst. for Polar and Marine Research, Bremerhaven (Germany); Richards, Thomas [National History Museum, London (United Kingdom); Worden, Alexandra Z. [Monterey Bay Aquarium Research Inst., Moss Landing, CA (United States); Zhang, Xiaoyu [California State Univ. (CalState), San Marcos, CA (United States); Grigoriev, Igor V. [USDOE Joint Genome Inst., Walnut Creek, CA (United States)

2012-06-18

Coccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering themvisible fromspace3.Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO₂ in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO₂ production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate thatE. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.

The effect of oil sands process-affected water and model naphthenic acids on photosynthesis and growth in Emiliania huxleyi and Chlorella vulgaris.

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Beddow, Jessica; Johnson, Richard J; Lawson, Tracy; Breckels, Mark N; Webster, Richard J; Smith, Ben E; Rowland, Steven J; Whitby, Corinne

2016-02-01

Naphthenic acids (NAs) are among the most toxic organic pollutants present in oil sands process waters (OSPW) and enter marine and freshwater environments through natural and anthropogenic sources. We investigated the effects of the acid extractable organic (AEO) fraction of OSPW and individual surrogate NAs, on maximum photosynthetic efficiency of photosystem II (PSII) (FV/FM) and cell growth in Emiliania huxleyi and Chlorella vulgaris as representative marine and freshwater phytoplankton. Whilst FV/FM in E. huxleyi and C. vulgaris was not inhibited by AEO, exposure to two surrogate NAs: (4'-n-butylphenyl)-4-butanoic acid (n-BPBA) and (4'-tert-butylphenyl)-4-butanoic acid (tert-BPBA), caused complete inhibition of FV/FM in E. huxleyi (≥10 mg L(-1)n-BPBA; ≥50 mg L(-1)tert-BPBA) but not in C. vulgaris. Growth rates and cell abundances in E. huxleyi were also reduced when exposed to ≥10 mg L(-1)n- and tert-BPBA; however, higher concentrations of n- and tert-BPBA (100 mg L(-1)) were required to reduce cell growth in C. vulgaris. AEO at ≥10 mg L(-1) stimulated E. huxleyi growth rate (p ≤ 0.002), yet had no apparent effect on C. vulgaris. In conclusion, E. huxleyi was generally more sensitive to NAs than C. vulgaris. This report provides a better understanding of the physiological responses of phytoplankton to NAs which will enable improved monitoring of NA pollution in aquatic ecosystems in the future. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Light intensity modulation by coccoliths of Emiliania huxleyi as a micro-photo-regulator

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Mizukawa, Yuri; Miyashita, Yuito; Satoh, Manami; Shiraiwa, Yoshihiro; Iwasaka, Masakazu

2015-09-01

In this study, we present experimental evidence showing that coccoliths have light-scattering anisotropy that contributes to a possible control of solar light exposure in the ocean. Changing the angle between the incident light and an applied magnetic field causes differences in the light-scattering intensities of a suspension of coccoliths isolated from Emiliania huxleyi. The magnetic field effect is induced by the diamagnetic torque force directing the coccolith radial plane perpendicular to the applied magnetic fields at 400 to 500 mT. The developed technique reveals the light-scattering anisotropies in the 3-μm-diameter floating coccoliths by orienting themselves in response to the magnetic fields. The detached coccolith scatters radially the light incident to its radial plane. The experimental results on magnetically oriented coccoliths show that an individual coccolith has a specific direction of light scattering, although the possible physiological effect of the coccolith remains for further study, focusing on the light-scattering anisotropies of coccoliths on living cells.

Numerical cell model investigating cellular carbon fluxes in Emiliania huxleyi.

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Holtz, Lena-Maria; Wolf-Gladrow, Dieter; Thoms, Silke

2015-01-07

Coccolithophores play a crucial role in the marine carbon cycle and thus it is interesting to know how they will respond to climate change. After several decades of research the interplay between intracellular processes and the marine carbonate system is still not well understood. On the basis of experimental findings given in literature, a numerical cell model is developed that describes inorganic carbon fluxes between seawater and the intracellular sites of calcite precipitation and photosynthetic carbon fixation. The implemented cell model consists of four compartments, for each of which the carbonate system is resolved individually. The four compartments are connected to each other via H(+), CO2, and HCO3(-) fluxes across the compartment-confining membranes. For CO2 accumulation around RubisCO, an energy-efficient carbon concentrating mechanism is proposed that relies on diffusive CO2 uptake. At low external CO2 concentrations and high light intensities, CO2 diffusion does not suffice to cover the carbon demand of photosynthesis and an additional uptake of external HCO3(-) becomes essential. The model is constrained by data of Emiliania huxleyi, the numerically most abundant coccolithophore species in the present-day ocean. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

Targeted and Untargeted Lipidomics of Emiliania huxleyi Viral Infection and Life Cycle Phases Highlights Molecular Biomarkers of Infection, Susceptibility, and Ploidy

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Jonathan Eliott Hunter

2015-10-01

Full Text Available Marine viruses that infect phytoplankton strongly influence the ecology and evolution of their hosts. Emiliania huxleyi is characterized by a biphasic life cycle composed of a diploid (2N and haploid (1N phase; diploid cells are susceptible to infection by specific coccolithoviruses, yet haploid cells are resistant. Glycosphingolipids (GSLs play a role during infection, but their molecular distribution in haploid cells is unknown. We present mass spectrometric analyses of lipids from cultures of uninfected diploid, infected diploid, and uninfected haploid E. huxleyi. Known viral GSLs were present in the infected diploid cultures as expected, but surprisingly, trace amounts of viral GSLs were also detected in the uninfected haploid cells. Sialic-acid GSLs have been linked to viral susceptibility in diploid cells, but were found to be absent in the haploid cultures, suggesting a mechanism of haploid resistance to infection. Additional untargeted high-resolution mass spectrometry data processed via multivariate analysis unveiled a number of novel biomarkers of infected, non-infected, and haploid cells. These data expand our understanding on the dynamics of lipid metabolism during E. huxleyi host/virus interactions and highlight potential novel biomarkers for infection, susceptibility, and ploidy.

n-Nonacosadienes from the marine haptophytes Emiliania huxleyi and Gephyrocapsa oceanica.

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Nakamura, Hideto; Sawada, Ken; Araie, Hiroya; Suzuki, Iwane; Shiraiwa, Yoshihiro

2015-03-01

The hydrocarbons in cultures of marine haptophytes Emiliania huxleyi NIES837 and Gephyrocapsa oceanica NIES1315 were analyzed, and nonacosadienes and hentriacontadienes were detected as the major compounds in both strains. C29 and C31 monoenes and di-, tri- and tetra-unsaturated C33 alkenes were also detected as minor compounds but not C37 and C38 alkenes. The positions of the double bonds in the C29 and C31 alkenes were determined by mass spectrometry of their dimethyl disulfide (DMDS) adducts. Among the four C29 alkenes identified, the most abundant isomer was 2,20-nonacosadiene, and the other three compounds were 1,20-nonacosadiene, 3,20-nonacosadiene and 9-nonacosene, respectively. Hitherto, 2,20-nonacosadiene and 3,20-nonacosadiene were unknown to be natural products. The double bond at the n-9 (ω9) position in these C29 alkenes is hypothesized to be derived from precursors of unsaturated fatty acids possessing an n-9 double bond, such as (9Z)-9-octadecenoic acid. Nonacosadienes have the potential for being used as distinct haptophyte biomarkers. Copyright © 2015 Elsevier Ltd. All rights reserved.

Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta).

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Araie, Hiroya; Sakamoto, Kou; Suzuki, Iwane; Shiraiwa, Yoshihiro

2011-07-01

The marine coccolithophore Emiliania huxleyi (Haptophyta) requires selenium as an essential element for growth, and the active species absorbed is selenite, not selenate. This study characterized the selenite uptake mechanism using ⁷⁵Se as a tracer. Kinetic analysis of selenite uptake showed the involvement of both active and passive transport processes. The active transport was suppressed by 0.5 mM vanadate, a membrane-permeable inhibitor of H⁺-ATPase, at pH 8.3. When the pH was lowered from 8.3 to 5.3, the selenite uptake activity greatly increased, even in the presence of vanadate, suggesting that the H⁺ concentration gradient may be a motive force for selenite transport. [⁷⁵Se]Selenite uptake at selenite-limiting concentrations was hardly affected by selenate, sulfate and sulfite, even at 100 μM. In contrast, 3 μM orthophosphate increased the K(m) 5-fold. These data showed that HSeO₃⁻, a dominant selenite species at acidic pH, is the active species for transport through the plasma membrane and transport is driven by ΔpH energized by H⁺-ATPase. Kinetic analysis showed that the selenite uptake activity was competitively inhibited by orthophosphate. Furthermore, the active selenite transport mechanism was shown to be induced de novo under Se-deficient conditions and induction was suppressed by the addition of either sufficient selenite or cycloheximide, an inhibitor of de novo protein synthesis. These results indicate that E. huxleyi cells developed an active selenite uptake mechanism to overcome the disadvantages of Se limitation in ecosystems, maintaining selenium metabolism and selenoproteins for high viability.

NEW EVIDENCE FOR MORPHOLOGICAL AND GENETIC VARIATION IN THE COSMOPOLITAN COCCOLITHOPHORE EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) FROM THE COX1b-ATP4 GENES(1).

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Hagino, Kyoko; Bendif, El Mahdi; Young, Jeremy R; Kogame, Kazuhiro; Probert, Ian; Takano, Yoshihito; Horiguchi, Takeo; de Vargas, Colomban; Okada, Hisatake

2011-10-01

Emiliania huxleyi (Lohmann) W. W. Hay et H. Mohler is a cosmopolitan coccolithophore occurring from tropical to subpolar waters and exhibiting variations in morphology of coccoliths possibly related to environmental conditions. We examined morphological characters of coccoliths and partial mitochondrial sequences of the cytochrome oxidase 1b (cox1b) through adenosine triphosphate synthase 4 (atp4) genes of 39 clonal E. huxleyi strains from the Atlantic and Pacific Oceans, Mediterranean Sea, and their adjacent seas. Based on the morphological study of culture strains by SEM, Type O, a new morphotype characterized by coccoliths with an open central area, was separated from existing morphotypes A, B, B/C, C, R, and var. corona, characterized by coccoliths with central area elements. Molecular phylogenetic studies revealed that E. huxleyi consists of at least two mitochondrial sequence groups with different temperature preferences/tolerances: a cool-water group occurring in subarctic North Atlantic and Pacific and a warm-water group occurring in the subtropical Atlantic and Pacific and in the Mediterranean Sea. © 2011 Phycological Society of America.

Influence of CO2 and nitrogen limitation on the coccolith volume of Emiliania huxleyi (Haptophyta

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A. Talec

2012-10-01

Full Text Available Coccolithophores, a key phytoplankton group, are one of the most studied organisms regarding their physiological response to ocean acidification/carbonation. The biogenic production of calcareous coccoliths has made coccolithophores a promising group for paleoceanographic research aiming to reconstruct past environmental conditions. Recently, geochemical and morphological analyses of fossil coccoliths have gained increased interest in regard to changes in seawater carbonate chemistry. The cosmopolitan coccolithophore Emiliania huxleyi (Lohm. Hay and Mohler was cultured over a range of pCO2 levels in controlled laboratory experiments under nutrient replete and nitrogen limited conditions. Measurements of photosynthesis and calcification revealed, as previously published, an increase in particulate organic carbon production and a moderate decrease in calcification from ambient to elevated pCO2. The enhancement in particulate organic carbon production was accompanied by an increase in cell diameter. Changes in coccolith volume were best correlated with the coccosphere/cell diameter and no significant correlation was found between the coccolith volume and the particulate inorganic carbon production. The conducted experiments revealed that the coccolith volume of E. huxleyi is variable with aquatic CO2 concentration but its sensitivity is rather small in comparison with its sensitivity to nitrogen limitation. Comparing coccolith morphological and geometrical parameters like volume, mass and size to physiological parameters under controlled laboratory conditions is an important step to understand variations in fossil coccolith geometry.

Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi.

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Kottmeier, Dorothee M; Rokitta, Sebastian D; Rost, Björn

2016-07-01

A combined increase in seawater [CO2 ] and [H(+) ] was recently shown to induce a shift from photosynthetic HCO3 (-) to CO2 uptake in Emiliania huxleyi. This shift occurred within minutes, whereas acclimation to ocean acidification (OA) did not affect the carbon source. To identify the driver of this shift, we exposed low- and high-light acclimated E. huxleyi to a matrix of two levels of dissolved inorganic carbon (1400, 2800 μmol kg(-1) ) and pH (8.15, 7.85) and directly measured cellular O2 , CO2 and HCO3 (-) fluxes under these conditions. Exposure to increased [CO2 ] had little effect on the photosynthetic fluxes, whereas increased [H(+) ] led to a significant decline in HCO3 (-) uptake. Low-light acclimated cells overcompensated for the inhibition of HCO3 (-) uptake by increasing CO2 uptake. High-light acclimated cells, relying on higher proportions of HCO3 (-) uptake, could not increase CO2 uptake and photosynthetic O2 evolution consequently became carbon-limited. These regulations indicate that OA responses in photosynthesis are caused by [H(+) ] rather than by [CO2 ]. The impaired HCO3 (-) uptake also provides a mechanistic explanation for lowered calcification under OA. Moreover, it explains the OA-dependent decrease in photosynthesis observed in high-light grown phytoplankton. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Simultaneous shifts in elemental stoichiometry and fatty acids of Emiliania huxleyi in response to environmental changes

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R. Bi

2018-02-01

Full Text Available Climate-driven changes in environmental conditions have significant and complex effects on marine ecosystems. Variability in phytoplankton elements and biochemicals can be important for global ocean biogeochemistry and ecological functions, while there is currently limited understanding on how elements and biochemicals respond to the changing environments in key coccolithophore species such as Emiliania huxleyi. We investigated responses of elemental stoichiometry and fatty acids (FAs in a strain of E. huxleyi under three temperatures (12, 18 and 24 °C, three N : P supply ratios (molar ratios 10:1, 24:1 and 63:1 and two pCO2 levels (560 and 2400 µatm. Overall, C : N : P stoichiometry showed the most pronounced response to N : P supply ratios, with high ratios of particulate organic carbon vs. particulate organic nitrogen (POC : PON and low ratios of PON vs. particulate organic phosphorus (PON : POP in low-N media, and high POC : POP and PON : POP in low-P media. The ratio of particulate inorganic carbon vs. POC (PIC : POC and polyunsaturated fatty acid proportions strongly responded to temperature and pCO2, both being lower under high pCO2 and higher with warming. We observed synergistic interactions between warming and nutrient deficiency (and high pCO2 on elemental cellular contents and docosahexaenoic acid (DHA proportion in most cases, indicating the enhanced effect of warming under nutrient deficiency (and high pCO2. Our results suggest differential sensitivity of elements and FAs to the changes in temperature, nutrient availability and pCO2 in E. huxleyi, which is to some extent unique compared to non-calcifying algal classes. Thus, simultaneous changes of elements and FAs should be considered when predicting future roles of E. huxleyi in the biotic-mediated connection between biogeochemical cycles, ecological functions and climate change.

Coccolith arrangement follows Eulerian mathematics in the coccolithophore Emiliania huxleyi.

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Xu, Kai; Hutchins, David; Gao, Kunshan

2018-01-01

The globally abundant coccolithophore, Emiliania huxleyi , plays an important ecological role in oceanic carbon biogeochemistry by forming a cellular covering of plate-like CaCO 3 crystals (coccoliths) and fixing CO 2 . It is unknown how the cells arrange different-sized coccoliths to maintain full coverage, as the cell surface area of the cell changes during daily cycle. We used Euler's polyhedron formula and CaGe simulation software, validated with the geometries of coccoliths, to analyze and simulate the coccolith topology of the coccosphere and to explore the arrangement mechanisms. There were only small variations in the geometries of coccoliths, even when the cells were cultured under variable light conditions. Because of geometric limits, small coccoliths tended to interlock with fewer and larger coccoliths, and vice versa. Consequently, to sustain a full coverage on the surface of cell, each coccolith was arranged to interlock with four to six others, which in turn led to each coccosphere contains at least six coccoliths. The number of coccoliths per coccosphere must keep pace with changes on the cell surface area as a result of photosynthesis, respiration and cell division. This study is an example of natural selection following Euler's polyhedral formula, in response to the challenge of maintaining a CaCO 3 covering on coccolithophore cells as cell size changes.

Coccolith arrangement follows Eulerian mathematics in the coccolithophore Emiliania huxleyi

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Kai Xu

2018-04-01

Full Text Available Background The globally abundant coccolithophore, Emiliania huxleyi, plays an important ecological role in oceanic carbon biogeochemistry by forming a cellular covering of plate-like CaCO3 crystals (coccoliths and fixing CO2. It is unknown how the cells arrange different-sized coccoliths to maintain full coverage, as the cell surface area of the cell changes during daily cycle. Methods We used Euler’s polyhedron formula and CaGe simulation software, validated with the geometries of coccoliths, to analyze and simulate the coccolith topology of the coccosphere and to explore the arrangement mechanisms. Results There were only small variations in the geometries of coccoliths, even when the cells were cultured under variable light conditions. Because of geometric limits, small coccoliths tended to interlock with fewer and larger coccoliths, and vice versa. Consequently, to sustain a full coverage on the surface of cell, each coccolith was arranged to interlock with four to six others, which in turn led to each coccosphere contains at least six coccoliths. Conclusion The number of coccoliths per coccosphere must keep pace with changes on the cell surface area as a result of photosynthesis, respiration and cell division. This study is an example of natural selection following Euler’s polyhedral formula, in response to the challenge of maintaining a CaCO3 covering on coccolithophore cells as cell size changes.

Response of growth and photosynthesis of Emiliania huxleyi to visible and UV irradiances under different light regimes.

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Xing, Tao; Gao, Kunshan; Beardall, John

2015-01-01

Microalgae are capable of acclimating to changes in light and ultraviolet radiation (UVR, 280-400 nm). However, little is known about how the ecologically important coccolithophore Emiliania huxleyi responds to UVR when acclimated to different light regimes. Here, we grew E. huxleyi under indoor constant light or fluctuating sunlight with or without UVR, and investigated its growth, photosynthetic performance and pigmentation. Under the indoor constant light regime, the specific growth rate (μ) was highest, while fluctuating outdoor solar radiation significantly decreased the growth rate. Addition of UVR further decreased the growth rate. The repair rate of photosystem II (PSII), as reflected in changes in PSII quantum yield, showed an inverse correlation with growth rate. Cells grown under the indoor constant light regime exhibited the lowest repair rate, while cells from the outdoor fluctuating light regimes significantly increased their repair rate. Addition of UVR increased both the repair rate and intracellular UV-absorbing compounds. This increased repair capability, at the cost of decreased growth rate, persisted after the cells were transferred back to the indoor again, suggesting an enhanced allocation of energy and resources for repair of photosynthetic machinery damage by solar UVR which persisted for a period after transfer from solar UVR. © 2014 The American Society of Photobiology.

Formation and mosaicity of coccolith segment calcite of the marine algae Emiliania huxleyi.

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Yin, Xiaofei; Ziegler, Andreas; Kelm, Klemens; Hoffmann, Ramona; Watermeyer, Philipp; Alexa, Patrick; Villinger, Clarissa; Rupp, Ulrich; Schlüter, Lothar; Reusch, Thorsten B H; Griesshaber, Erika; Walther, Paul; Schmahl, Wolfgang W

2018-02-01

Coccolithophores belong to the most abundant calcium carbonate mineralizing organisms. Coccolithophore biomineralization is a complex and highly regulated process, resulting in a product that strongly differs in its intricate morphology from the abiogenically produced mineral equivalent. Moreover, unlike extracellularly formed biological carbonate hard tissues, coccolith calcite is neither a hybrid composite, nor is it distinguished by a hierarchical microstructure. This is remarkable as the key to optimizing crystalline biomaterials for mechanical strength and toughness lies in the composite nature of the biological hard tissue and the utilization of specific microstructures. To obtain insight into the pathway of biomineralization of Emiliania huxleyi coccoliths, we examine intracrystalline nanostructural features of the coccolith calcite in combination with cell ultrastructural observations related to the formation of the calcite in the coccolith vesicle within the cell. With TEM diffraction and annular dark-field imaging, we prove the presence of planar imperfections in the calcite crystals such as planar mosaic block boundaries. As only minor misorientations occur, we attribute them to dislocation networks creating small-angle boundaries. Intracrystalline occluded biopolymers are not observed. Hence, in E. huxleyi calcite mosaicity is not caused by occluded biopolymers, as it is the case in extracellularly formed hard tissues of marine invertebrates, but by planar defects and dislocations which are typical for crystals formed by classical ion-by-ion growth mechanisms. Using cryo-preparation techniques for SEM and TEM, we found that the membrane of the coccolith vesicle and the outer membrane of the nuclear envelope are in tight proximity, with a well-controlled constant gap of ~4 nm between them. We describe this conspicuous connection as a not yet described interorganelle junction, the "nuclear envelope junction". The narrow gap of this junction likely

The effect of temperature, salinity and growth rate on the stable hydrogen isotopic composition of long chain alkenones produced by Emiliania huxleyi and Gephyrocapsa oceanica

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S. Schouten

2006-01-01

Full Text Available Two haptophyte algae, Emiliania huxleyi and Gephyrocapsa oceanica, were cultured at different temperatures and salinities to investigate the impact of these factors on the hydrogen isotopic composition of long chain alkenones synthesized by these algae. Results showed that alkenones synthesized by G. oceanica were on average depleted in D by 30 compared to those of E. huxleyi when grown under similar temperature and salinity conditions. The fractionation factor, αalkenones-H2O, ranged from 0.760 to 0.815 for E. huxleyi and from 0.741 to 0.788 for G. oceanica. There was no significant correlation of αalkenones-H2O with temperature but a positive linear correlation was observed between αalkenones-H2O and salinity with ~3 change in fractionation per salinity unit and a negative correlation between αalkenones-H2O and growth rate. This suggests that both salinity and growth rate can have a substantial impact on the stable hydrogen isotopic composition of long chain alkenones in natural environments.

Gas-Chromatography Mass-Spectrometry (GC-MS Based Metabolite Profiling Reveals Mannitol as a Major Storage Carbohydrate in the Coccolithophorid Alga Emiliania huxleyi

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Alisdair R. Fernie

2013-03-01

Full Text Available Algae are divergent organisms having a wide variety of evolutional histories. Although most of them share photosynthetic activity, their pathways of primary carbon metabolism are rather diverse among species. Here we developed a method for gas chromatography-mass spectroscopy (GC-MS based metabolite profiling for the coccolithophorid alga Emiliania huxleyi, which is one of the most abundant microalgae in the ocean, in order to gain an overview of the pathway of primary metabolism within this alga. Following method optimization, twenty-six metabolites could be detected by this method. Whilst most proteogenic amino acids were detected, no peaks corresponding to malate and fumarate were found. The metabolite profile of E. huxleyi was, however, characterized by a prominent accumulation of mannitol reaching in excess of 14 nmol 106 cells−1. Similarly, the accumulation of the 13C label during short term H13CO3− feeding revealed a massive redistribution of label into mannitol as well as rapid but saturating label accumulation into glucose and several amino acids including aspartate, glycine and serine. These results provide support to previous work suggesting that this species adopts C3 photosynthesis and that mannitol functions as a carbon store in E. huxleyi.

Nineteen-year time-series sediment trap study of Coccolithus pelagicus and Emiliania huxleyi (calcareous nannoplankton) fluxes in the Bering Sea and subarctic Pacific Ocean

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Tsutsui, Hideto; Takahashi, Kozo; Asahi, Hirofumi; Jordan, Richard W.; Nishida, Shiro; Nishiwaki, Niichi; Yamamoto, Sumito

2016-03-01

Coccolithophore fluxes at two sediment trap stations, Station AB in the Bering Sea and Station SA in the subarctic Pacific Ocean, were studied over a nineteen-year (August 1990-July 2009) interval. Two major species, Coccolithus pelagicus and Emiliania huxleyi, occur at both stations, with Gephyrocapsa oceanica, Umbilicosphaera sibogae, Braarudosphaera bigelowii, and Syracosphaera spp. as minor components. The mean coccolithophore fluxes at Stations AB and SA increased from 28.9×106 m2 d-1 and 61.9×106 m2 d-1 in 1990-1999 to 54.4×106 m2 d-1 and 130.2×106 m2 d-1 in 2002-2009, respectively. Furthermore, in late 1999 to early 2000, there was a significant shift in the most dominant species from E. huxleyi to C. pelagicus. High abundances of E. huxleyi correspond to the positive mode of the Pacific Decadal Oscillation (PDO), while those of C. pelagicus respond to the PDO negative mode and are related to water temperature changes at huxleyi. At both stations the mean seawater temperature in the top 45 m from August to October increased ca. 1 °C with linear recurrence from 1990 to 2008. The coccosphere fluxes after Year 2000 at Stations AB and SA, and the shift in species dominance, may have been influenced by this warming.

Application of the major capsid protein as a marker of the phylogenetic diversity of Emiliania huxleyi viruses.

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Rowe, Janet M; Fabre, Marie-Françoise; Gobena, Daniel; Wilson, William H; Wilhelm, Steven W

2011-05-01

Studies of the Phycodnaviridae have traditionally relied on the DNA polymerase (pol) gene as a biomarker. However, recent investigations have suggested that the major capsid protein (MCP) gene may be a reliable phylogenetic biomarker. We used MCP gene amplicons gathered across the North Atlantic to assess the diversity of Emiliania huxleyi-infecting Phycodnaviridae. Nucleotide sequences were examined across >6000 km of open ocean, with comparisons between concentrates of the virus-size fraction of seawater and of lysates generated by exposing host strains to these same virus concentrates. Analyses revealed that many sequences were only sampled once, while several were over-represented. Analyses also revealed nucleotide sequences distinct from previous coastal isolates. Examination of lysed cultures revealed a new richness in phylogeny, as MCP sequences previously unrepresented within the existing collection of E. huxleyi viruses (EhV) were associated with viruses lysing cultures. Sequences were compared with previously described EhV MCP sequences from the North Sea and a Norwegian Fjord, as well as from the Gulf of Maine. Principal component analysis indicates that location-specific distinctions exist despite the presence of sequences common across these environments. Overall, this investigation provides new sequence data and an assessment on the use of the MCP gene. © 2011 Federation of European Microbiological Societies Published by Blackwell Publishing Ltd. All rights reserved.

The effect of nitrate and phosphate availability on Emiliania huxleyi (NZEH physiology under different CO2 scenarios

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Mónica eRouco

2013-06-01

Full Text Available Growth and calcification of the marine coccolithophorid Emiliania huxleyi is affected by ocean acidification and macronutrients limitation and its response varies between strains. Here we investigated the physiological performance of a highly calcified E. huxleyi strain, NZEH, in a multiparametric experiment. Cells were exposed to different CO2 levels (ranging from 250 to 1314 µatm under three nutrient conditions [nutrient replete (R, nitrate limited (-N and phosphate limited (-P]. We focused on calcite and organic carbon quotas and on nitrate and phosphate utilization by analyzing the activity of nitrate reductase (NRase and alkaline phosphatase (APase, respectively. Particulate inorganic (PIC and organic (POC carbon quotas increased with increasing CO2 under R conditions but a different pattern was observed under nutrient limitation. The PIC:POC ratio decreased with increasing CO2 in nutrient limited cultures. Coccolith length increased with CO2 under all nutrient conditions but the coccosphere volume varied depending on the nutrient treatment. Maximum APase activity was found at 561 µatm of CO2 (pH 7.92 in -P cultures and in R conditions, NRase activity increased linearly with CO2. These results suggest that E. huxleyi’s competitive ability for nutrient uptake might be altered in future high-CO2 oceans. The combined dataset will be useful in model parameterizations of the carbon cycle and ocean acidification.

The coccolithophores Emiliania huxleyi and Coccolithus pelagicus: Extant populations from the Norwegian-Iceland Seas and Fram Strait

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Dylmer, C. V.; Giraudeau, J.; Hanquiez, V.; Husum, K.

2015-04-01

The distributions of the coccolithophore species Emiliania huxleyi and Coccolithus pelagicus (heterococcolith-bearing phase) in the northern North Atlantic were investigated along two zonal transects crossing Fram Strait and the Norwegian-Iceland Sea, respectively, each conducted during both July 2011 and September-October 2007. Remote-sensing images as well as CTD and ARGO profiles were used to constrain the physico-chemical state of the surface water and surface mixed layer at the time of sampling. Strong seasonal differences in bulk coccolithophore standing stocks characterized the northern and southern transects, where the maximum values of 53×103 cells/l (fall) and 70×103 cells/l (summer), respectively, were essentially explained by E. huxleyi. This pattern confirms previous findings of a summer to fall northwestward shift in peak coccolithophore cell densities within the Nordic Seas. While depicting an overall zonal shift in high cell densities between the summer (Norwegian Sea) and fall (northern Iceland Sea) conditions, the southern transects were additionally characterized by local peak coccolithophore concentrations associated with a geographically and temporally restricted convective process (Lofoten Gyre, summer), as well as an island mass effect (in the vicinity of Jan Mayen Island, fall). Maximum coccolithophore abundances within Fram Strait were found during both seasons close to the western frontal zone (Polar and Arctic Fronts) an area of strong density gradients where physical and chemical properties of the surface mixed layer are prone to enhance phytoplankton biomass and productivity. Here, changes in species dominance from E. huxleyi in summer, to C. pelagicus in fall, were related to the strengthened influence during summer, of surface AW, as well as to high July solar irradiance, within an area usually characterized by C. pelagicus-dominated low density populations.

Isolation and characterization of lipid rafts in Emiliania huxleyi: a role for membrane microdomains in host-virus interactions.

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Rose, Suzanne L; Fulton, James M; Brown, Christopher M; Natale, Frank; Van Mooy, Benjamin A S; Bidle, Kay D

2014-04-01

Coccolithoviruses employ a suite of glycosphingolipids (GSLs) to successfully infect the globally important coccolithophore Emiliania huxleyi. Lipid rafts, chemically distinct membrane lipid microdomains that are enriched in GSLs and are involved in sensing extracellular stimuli and activating signalling cascades through protein-protein interactions, likely play a fundamental role in host-virus interactions. Using combined lipidomics, proteomics and bioinformatics, we isolated and characterized the lipid and protein content of lipid rafts from control E. huxleyi cells and those infected with EhV86, the type strain for Coccolithovirus. Lipid raft-enriched fractions were isolated and purified as buoyant, detergent-resistant membranes (DRMs) in OptiPrep density gradients. Transmission electron microscopy of vesicle morphology, polymerase chain reaction amplification of the EhV major capsid protein gene and immunoreactivity to flotillin antisera served as respective physical, molecular and biochemical markers. Subsequent lipid characterization of DRMs via high performance liquid chromatography-triple quadrapole mass spectrometry revealed four distinct GSL classes. Parallel proteomic analysis confirmed flotillin as a major lipid raft protein, along with a variety of proteins affiliated with host defence, programmed cell death and innate immunity pathways. The detection of an EhV86-encoded C-type lectin-containing protein confirmed that infection occurs at the interface between lipid rafts and cellular stress/death pathways via specific GSLs and raft-associated proteins. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Influence of changing carbonate chemistry on morphology and weight of coccoliths formed by Emiliania huxleyi

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K. G. Schulz

2012-08-01

Full Text Available The coccolithophore Emiliania huxleyi is a marine phytoplankton species capable of forming small calcium carbonate scales (coccoliths which cover the organic part of the cell. Calcification rates of E. huxleyi are known to be sensitive to changes in seawater carbonate chemistry. It has, however, not yet been clearly determined how these changes are reflected in size and weight of individual coccoliths and which specific parameter(s of the carbonate system drive morphological modifications. Here, we compare data on coccolith size, weight, and malformation from a set of five experiments with a large diversity of carbonate chemistry conditions. This diversity allows distinguishing the influence of individual carbonate chemistry parameters such as carbon dioxide (CO2, bicarbonate (HCO3−, carbonate ion (CO32−, and protons (H+ on the measured parameters. Measurements of fine-scale morphological structures reveal an increase of coccolith malformation with decreasing pH suggesting that H+ is the major factor causing malformations. Coccolith distal shield area varies from about 5 to 11 μm2. Changes in size seem to be mainly induced by varying [HCO3−] and [H+] although influence of [CO32−] cannot be entirely ruled out. Changes in coccolith weight were proportional to changes in size. Increasing CaCO3 production rates are reflected in an increase in coccolith weight and an increase of the number of coccoliths formed per unit time. The combined investigation of morphological features and coccolith production rates presented in this study may help to interpret data derived from sediment cores, where coccolith morphology is used to reconstruct calcification rates in the water column.

ELEVATED CARBON DIOXIDE DIFFERENTIALLY ALTERS THE PHOTOPHYSIOLOGY OF THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE) AND EMILIANIA HUXLEYI (HAPTOPHYTA)(1).

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McCarthy, Avery; Rogers, Susan P; Duffy, Stephen J; Campbell, Douglas A

2012-06-01

Increasing anthropogenic carbon dioxide is causing changes to ocean chemistry, which will continue in a predictable manner. Dissolution of additional atmospheric carbon dioxide leads to increased concentrations of dissolved carbon dioxide and bicarbonate and decreased pH in ocean water. The concomitant effects on phytoplankton ecophysiology, leading potentially to changes in community structure, are now a focus of concern. Therefore, we grew the coccolithophore Emiliania huxleyi (Lohmann) W. W. Hay et H. Mohler and the diatom strains Thalassiosira pseudonana (Hust.) Hasle et Heimdal CCMP 1014 and T. pseudonana CCMP 1335 under low light in turbidostat photobioreactors bubbled with air containing 390 ppmv or 750 ppmv CO2 . Increased pCO2 led to increased growth rates in all three strains. In addition, protein levels of RUBISCO increased in the coastal strains of both species, showing a larger capacity for CO2 assimilation at 750 ppmv CO2 . With increased pCO2 , both T. pseudonana strains displayed an increased susceptibility to PSII photoinactivation and, to compensate, an augmented capacity for PSII repair. Consequently, the cost of maintaining PSII function for the diatoms increased at increased pCO2 . In E. huxleyi, PSII photoinactivation and the counter-acting repair, while both intrinsically larger than in T. pseudonana, did not change between the current and high-pCO2 treatments. The content of the photosynthetic electron transport intermediary cytochrome b6/f complex increased significantly in the diatoms under elevated pCO2 , suggesting changes in electron transport function. © 2012 Phycological Society of America.

Environmental control on Emiliania huxleyi coccolithophore calcification in the Mediterranean Sea

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D'Amario, Barbara; Grelaud, Michael; Ziveri, Patrizia

2016-04-01

The Mediterranean Sea, a "natural laboratory" characterized by strong environmental gradients, is likely to undergo serious alterations due to climate change and ocean acidification. These processes are expected to affect also phytoplankton distribution. Coccolithophores are the only phytoplankton calcifying group and laboratory studies on E. huxleyi, the most abundant and widely distributed species of coccolithophores worldwide, yield strain-specific results. Culture experiments must be integrated with observations in the natural environment to understand existing interactions between drivers, and to verify population structures in different areas. Two transects spanning the south-western and south-eastern basins have been investigated, combining data from April 2011 (Meteor cruise M84/3) and May 2013 (MedSeA cruise). E. huxleyi coccolith morphometry was analyzed to determine average mass and length. These results were then compared with morphological observations performed on the largely dominant E. huxleyi Type A through scanning electron microscope (SEM). We distinguished four main calcification morphologies within E. huxleyi Type A: low-calcified (A1), medium-calcified (A2), high-calcified with closed central area (A3a), and open central area (A3b). E. huxleyi coccolith mass was strongly and positively correlated with the relative abundance of a particular morphology. Moreover, the calcification morphologies were preferentially distributed in the Mediterranean according to specific combinations of environmental variables, which included the carbonate chemistry system. The distribution of E. huxleyi Type A calcification morphologies in the Mediterranean is likely to be influenced by climate changes. Coccolithophore calcification degree is connected to the carbon cycle through photosynthesis / calcification ratio and sedimentation (particulate inorganic and organic carbon reaching the seafloor). This study aims to provide a basis for future investigations on the

Shotgun proteomic analysis of Emiliania huxleyi, a marine phytoplankton species of major biogeochemical importance.

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Jones, Bethan M; Edwards, Richard J; Skipp, Paul J; O'Connor, C David; Iglesias-Rodriguez, M Debora

2011-06-01

Emiliania huxleyi is a unicellular marine phytoplankton species known to play a significant role in global biogeochemistry. Through the dual roles of photosynthesis and production of calcium carbonate (calcification), carbon is transferred from the atmosphere to ocean sediments. Almost nothing is known about the molecular mechanisms that control calcification, a process that is tightly regulated within the cell. To initiate proteomic studies on this important and phylogenetically remote organism, we have devised efficient protein extraction protocols and developed a bioinformatics pipeline that allows the statistically robust assignment of proteins from MS/MS data using preexisting EST sequences. The bioinformatics tool, termed BUDAPEST (Bioinformatics Utility for Data Analysis of Proteomics using ESTs), is fully automated and was used to search against data generated from three strains. BUDAPEST increased the number of identifications over standard protein database searches from 37 to 99 proteins when data were amalgamated. Proteins involved in diverse cellular processes were uncovered. For example, experimental evidence was obtained for a novel type I polyketide synthase and for various photosystem components. The proteomic and bioinformatic approaches developed in this study are of wider applicability, particularly to the oceanographic community where genomic sequence data for species of interest are currently scarce.

Grazing-Activated Production of Dimethyl Sulfide (DMS) by two clones of Emiliania huxleyi

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Wolfe, Gordon V.; Steinke, Michael

1996-01-01

Emiliania huxleyi clones CCMP 370 and CCMP 373 produced similar amounts of dimethylsulfoniopropionate (DMSP) during axenic exponential growth, averaging 109 mM internal DMSP. Both clones had detectable DMSP lyase activity, as measured by production of dimethyl sulfide (DMS) during in vitro assays of crude cell preparations, but activities and conditions differed considerably between clones. Clone 373 had high activity; clone 370 had low activity and required chloride. For both strains, enzyme activity per cell was constant during exponential growth, but little DMS was produced by healthy cells. Rather, DMS production was activated when cells were subjected to physical or chemical stresses that caused cell lysis. We propose that DMSP lyase and DMSP are segregated within these cells and re-action only under conditions that result in cell stress or damage. Such activation occurs during microzooplankton grazing. When these clones were grazed by the dinoflagellate Oxyrrhis marina, DMS was produced; ungrazed cells, as well as those exposed to grazer exudates and associated bacteria, generated no DMS. Grazing of clone 373 produced much more DMS than grazing of clone 370, consistent with their relative in vitro DMSP lyase activities. DMS was only generated when cells were actually being grazed, indicating that ingested cells were responsible for the DMS formation. We suggest that even low levels of grazing can greatly accelerate DMS production.

Effects of increased atmospheric CO2 on small and intermediate sized osmotrophs during a nutrient induced phytoplankton bloom

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A. Larsen

2008-05-01

Full Text Available We report the transient population dynamic response of the osmotrophic community initiated by a nutrient pulse in mesocosms exposed to different pCO2 levels. Differences in phytoplankton and heterotrophic bacteria abundances associated with the CO2 treatment are also described. Coastal seawater was enclosed in floating mesocosms (27 m3 and nutrients were supplied initially in order to stimulate growth of microbial organisms, including the coccolitophorid Emiliania huxleyi. The mesocosms were modified to achieve 350 μatm (1×CO2, 700 μatm (2×CO2 and 1050 μatm (3×CO2 CO2 pressure. The temporal dynamics was related to nutrient conditions in the enclosures. Numerically small osmotrophs (picoeukaryotes and Synechoccocus sp. dominated initially and towards the end of the experiment, whereas intermediate sized osmotrophs bloomed as the initial bloom of small sized osmotrophs ceased. Maximum concentrations of E. huxleyi were approximately 4.6×103 cells ml−1 whereas other intermediate sized osmotrophs reached approximately twice as high concentrations. The osmotrophic succession pattern did not change, and neither were we able to detect differences with regard to presence or absence of specific osmotrophic taxa as a consequence of altered pCO2. Towards the end of the experiment we did, however, record significantly higher picoeukaryotic- and lower Synechococcus-abundances in the higher CO2 treatments. Slightly increased cell concentrations of E. huxleyi and other nanoeukaryotes were also recorded at elevated pCO2 on certain days.

Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.

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Rooijakkers, Bart J M; Ikonen, Martina S; Linder, Markus B

2018-01-01

Six fungal-type cellulose binding domains were found in the genome of the coccolithophore Emiliania huxleyi and cloned and expressed in Escherichia coli. Sequence comparison indicate high similarity to fungal cellulose binding domains, raising the question of why these domains exist in coccolithophores. The proteins were tested for binding with cellulose and chitin as ligands, which resulted in the identification of two functional carbohydrate binding modules: EHUX2 and EHUX4. Compared to benchmark fungal cellulose binding domain Cel7A-CBM1 from Trichoderma reesei, these proteins showed slightly lower binding to birch and bacterial cellulose, but were more efficient chitin binders. Finally, a set of cellulose binding domains was created based on the shuffling of one well-functioning and one non-functional domain. These were characterized in order to get more information of the binding domain's sequence-function relationship, indicating characteristic differences between the molecular basis of cellulose versus chitin recognition. As previous reports have showed the presence of cellulose in coccoliths and here we find functional cellulose binding modules, a possible connection is discussed.

Fungal-type carbohydrate binding modules from the coccolithophore Emiliania huxleyi show binding affinity to cellulose and chitin.

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Bart J M Rooijakkers

Full Text Available Six fungal-type cellulose binding domains were found in the genome of the coccolithophore Emiliania huxleyi and cloned and expressed in Escherichia coli. Sequence comparison indicate high similarity to fungal cellulose binding domains, raising the question of why these domains exist in coccolithophores. The proteins were tested for binding with cellulose and chitin as ligands, which resulted in the identification of two functional carbohydrate binding modules: EHUX2 and EHUX4. Compared to benchmark fungal cellulose binding domain Cel7A-CBM1 from Trichoderma reesei, these proteins showed slightly lower binding to birch and bacterial cellulose, but were more efficient chitin binders. Finally, a set of cellulose binding domains was created based on the shuffling of one well-functioning and one non-functional domain. These were characterized in order to get more information of the binding domain's sequence-function relationship, indicating characteristic differences between the molecular basis of cellulose versus chitin recognition. As previous reports have showed the presence of cellulose in coccoliths and here we find functional cellulose binding modules, a possible connection is discussed.

Emiliania huxleyi increases calcification but not expression of calcification-related genes in long-term exposure to elevated temperature and pCO2.

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Benner, Ina; Diner, Rachel E; Lefebvre, Stephane C; Li, Dian; Komada, Tomoko; Carpenter, Edward J; Stillman, Jonathon H

2013-01-01

Increased atmospheric pCO2 is expected to render future oceans warmer and more acidic than they are at present. Calcifying organisms such as coccolithophores that fix and export carbon into the deep sea provide feedbacks to increasing atmospheric pCO2. Acclimation experiments suggest negative effects of warming and acidification on coccolithophore calcification, but the ability of these organisms to adapt to future environmental conditions is not well understood. Here, we tested the combined effect of pCO2 and temperature on the coccolithophore Emiliania huxleyi over more than 700 generations. Cells increased inorganic carbon content and calcification rate under warm and acidified conditions compared with ambient conditions, whereas organic carbon content and primary production did not show any change. In contrast to findings from short-term experiments, our results suggest that long-term acclimation or adaptation could change, or even reverse, negative calcification responses in E. huxleyi and its feedback to the global carbon cycle. Genome-wide profiles of gene expression using RNA-seq revealed that genes thought to be essential for calcification are not those that are most strongly differentially expressed under long-term exposure to future ocean conditions. Rather, differentially expressed genes observed here represent new targets to study responses to ocean acidification and warming.

cDNA microarrays as a tool for identification of biomineralization proteins in the coccolithophorid Emiliania huxleyi (Haptophyta).

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Quinn, Patrick; Bowers, Robert M; Zhang, Xiaoyu; Wahlund, Thomas M; Fanelli, Michael A; Olszova, Daniela; Read, Betsy A

2006-08-01

Marine unicellular coccolithophore algae produce species-specific calcite scales otherwise known as coccoliths. While the coccoliths and their elaborate architecture have attracted the attention of investigators from various scientific disciplines, our knowledge of the underpinnings of the process of biomineralization in this alga is still in its infancy. The processes of calcification and coccolithogenesis are highly regulated and likely to be complex, requiring coordinated expression of many genes and pathways. In this study, we have employed cDNA microarrays to investigate changes in gene expression associated with biomineralization in the most abundant coccolithophorid, Emiliania huxleyi. Expression profiling of cultures grown under calcifying and noncalcifying conditions has been carried out using cDNA microarrays corresponding to approximately 2,300 expressed sequence tags. A total of 127 significantly up- or down-regulated transcripts were identified using a P value of 0.01 and a change of >2.0-fold. Real-time reverse transcriptase PCR was used to test the overall validity of the microarray data, as well as the relevance of many of the proteins predicted to be associated with biomineralization, including a novel gamma-class carbonic anhydrase (A. R. Soto, H. Zheng, D. Shoemaker, J. Rodriguez, B. A. Read, and T. M. Wahlund, Appl. Environ. Microbiol. 72:5500-5511, 2006). Differentially regulated genes include those related to cellular metabolism, ion channels, transport proteins, vesicular trafficking, and cell signaling. The putative function of the vast majority of candidate transcripts could not be defined. Nonetheless, the data described herein represent profiles of the transcription changes associated with biomineralization-related pathways in E. huxleyi and have identified novel and potentially useful targets for more detailed analysis.

Over-calcified forms of the coccolithophore Emiliania huxleyi in high-CO2 waters are not preadapted to ocean acidification

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von Dassow, Peter; Díaz-Rosas, Francisco; Mahdi Bendif, El; Gaitán-Espitia, Juan-Diego; Mella-Flores, Daniella; Rokitta, Sebastian; John, Uwe; Torres, Rodrigo

2018-03-01

Marine multicellular organisms inhabiting waters with natural high fluctuations in pH appear more tolerant to acidification than conspecifics occurring in nearby stable waters, suggesting that environments of fluctuating pH hold genetic reservoirs for adaptation of key groups to ocean acidification (OA). The abundant and cosmopolitan calcifying phytoplankton Emiliania huxleyi exhibits a range of morphotypes with varying degrees of coccolith mineralization. We show that E. huxleyi populations in the naturally acidified upwelling waters of the eastern South Pacific, where pH drops below 7.8 as is predicted for the global surface ocean by the year 2100, are dominated by exceptionally over-calcified morphotypes whose distal coccolith shield can be almost solid calcite. Shifts in morphotype composition of E. huxleyi populations correlate with changes in carbonate system parameters. We tested if these correlations indicate that the hyper-calcified morphotype is adapted to OA. In experimental exposures to present-day vs. future pCO2 (400 vs. 1200 µatm), the over-calcified morphotypes showed the same growth inhibition (-29.1±6.3 %) as moderately calcified morphotypes isolated from non-acidified water (-30.7±8.8 %). Under the high-CO2-low-pH condition, production rates of particulate organic carbon (POC) increased, while production rates of particulate inorganic carbon (PIC) were maintained or decreased slightly (but not significantly), leading to lowered PIC / POC ratios in all strains. There were no consistent correlations of response intensity with strain origin. The high-CO2-low-pH condition affected coccolith morphology equally or more strongly in over-calcified strains compared to moderately calcified strains. High-CO2-low-pH conditions appear not to directly select for exceptionally over-calcified morphotypes over other morphotypes, but perhaps indirectly by ecologically correlated factors. More generally, these results suggest that oceanic planktonic

Effect of salinity on 2H/1H fractionation in lipids from continuous cultures of the coccolithophorid Emiliania huxleyi

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Sachs, Julian P.; Maloney, Ashley E.; Gregersen, Josh; Paschall, Christopher

2016-09-01

Salinity and temperature dictate the buoyancy of seawater, and by extension, ocean circulation and heat transport. Yet there remain few widely applicable proxies for salinity with the precision necessary to infer all but the largest hydrographic variations in the past. In the last decade the hydrogen isotope composition (2H/1H or δ2H) of microalgal lipids has been shown to increase systematically with salinity, providing a foundation for its use as a paleosalinity proxy. Culture and field studies have indicated a wide range of sensitivities for this response, ranging from about 0.6-3.3‰ ppt-1 depending on the lipid, location and/or culturing conditions. Lacking in these studies has been the controlled conditions necessary to isolate the response to salinity while keeping all other growth parameters constant. Here we show that the hydrogen isotope composition of lipids in the marine coccolithophorid Emiliania huxleyi grown in chemostats increased by 1.6 ± 0.3‰ ppt-1 (p huxleyi, which can be attributed to the fact that previous experiments were performed with batch cultures in which growth rates and other parameters differed between salinity treatments. The underlying cause of this response to salinity remains unknown, but may result from changes in (1) the proportion of lipid hydrogen derived from NADPH versus water, (2) the proportion of lipid hydrogen derived from NADPH from Photosystem I versus the oxidative pentose phosphate pathway (and other metabolic sources), or (3) the δ2H value of intracellular water.

Temperature affects the morphology and calcification of Emiliania huxleyi strains

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Rosas-Navarro, Anaid; Langer, Gerald; Ziveri, Patrizia

2016-05-01

The global warming debate has sparked an unprecedented interest in temperature effects on coccolithophores. The calcification response to temperature changes reported in the literature, however, is ambiguous. The two main sources of this ambiguity are putatively differences in experimental setup and strain specificity. In this study we therefore compare three strains isolated in the North Pacific under identical experimental conditions. Three strains of Emiliania huxleyi type A were grown under non-limiting nutrient and light conditions, at 10, 15, 20 and 25 °C. All three strains displayed similar growth rate versus temperature relationships, with an optimum at 20-25 °C. Elemental production (particulate inorganic carbon (PIC), particulate organic carbon (POC), total particulate nitrogen (TPN)), coccolith mass, coccolith size, and width of the tube element cycle were positively correlated with temperature over the sub-optimum to optimum temperature range. The correlation between PIC production and coccolith mass/size supports the notion that coccolith mass can be used as a proxy for PIC production in sediment samples. Increasing PIC production was significantly positively correlated with the percentage of incomplete coccoliths in one strain only. Generally, coccoliths were heavier when PIC production was higher. This shows that incompleteness of coccoliths is not due to time shortage at high PIC production. Sub-optimal growth temperatures lead to an increase in the percentage of malformed coccoliths in a strain-specific fashion. Since in total only six strains have been tested thus far, it is presently difficult to say whether sub-optimal temperature is an important factor causing malformations in the field. The most important parameter in biogeochemical terms, the PIC : POC ratio, shows a minimum at optimum growth temperature in all investigated strains. This clarifies the ambiguous picture featuring in the literature, i.e. discrepancies between PIC : POC

Interacting effects of ocean acidification and warming on growth and DMS-production in the haptophyte coccolithophore Emiliania huxleyi.

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Arnold, Hayley E; Kerrison, Philip; Steinke, Michael

2013-04-01

The production of the marine trace gas dimethyl sulfide (DMS) provides 90% of the marine biogenic sulfur in the atmosphere where it affects cloud formation and climate. The effects of increasing anthropogenic CO2 and the resulting warming and ocean acidification on trace gas production in the oceans are poorly understood. Here we report the first measurements of DMS-production and data on growth, DMSP and DMS concentrations in pH-stated cultures of the phytoplankton haptophyte Emiliania huxleyi. Four different environmental conditions were tested: ambient, elevated CO2 (+CO2 ), elevated temperature (+T) and elevated temperature and CO2 (+TCO2 ). In comparison to the ambient treatment, average DMS production was about 50% lower in the +CO2 treatment. Importantly, temperature had a strong effect on DMS production and the impacts outweighed the effects of a decrease in pH. As a result, the +T and +TCO2 treatments showed significantly higher DMS production of 36.2 ± 2.58 and 31.5 ± 4.66 μmol L(-1) cell volume (CV) h(-1) in comparison with the +CO2 treatment (14.9 ± 4.20 μmol L(-1) CV h(-1) ). As the cultures were aerated with an air/CO2 mixture, DMS was effectively removed from the incubation bottles so that concentration remained relatively low (3.6-6.1 mmol L(-1) CV). Intracellular DMSP has been shown to increase in E. huxleyi as a result of elevated temperature and/or elevated CO2 and our results are in agreement with this finding: the ambient and +CO2 treatments showed 125 ± 20.4 and 162 ± 27.7 mmol L(-1) CV, whereas +T and +TCO2 showed significantly increased intracellular DMSP concentrations of 195 ± 15.8 and 211 ± 28.2 mmol L(-1) CV respectively. Growth was unaffected by the treatments, but cell diameter decreased significantly under elevated temperature. These results indicate that DMS production is sensitive to CO2 and temperature in E. huxleyi. Hence, global environmental change that manifests in ocean acidification and warming may not result in

Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C4 compounds.

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Tsuji, Yoshinori; Suzuki, Iwane; Shiraiwa, Yoshihiro

2012-06-01

Pyruvate carboxylase (PYC) catalyzes the β-carboxylation of pyruvate to yield oxaloacetate (OAA). We previously isolated a cDNA encoding a putative PYC (EhPYC1) from the haptophyte alga Emiliania huxleyi and then proposed that EhPYC1 contributes to active anaplerotic β-carboxylation during photosynthesis although PYC activity was not detected in the cell extracts. Involvement of PYC in photosynthetic carbon metabolism is unique, since PYC generally functions in non-photosynthetic organisms. In the present study, we demonstrate that EhPYC1 is highly sensitive to endogenous proteases and therefore is easily degraded in cell extracts. By avoiding proteolytic degradation, PYC activity can be detected in the cell extracts of E. huxleyi. The activity of a recombinant His-tagged EhPYC1 expressed in Streptomyces lividans was inhibited by l-malate in a mixed non-competitive manner. Immunofluorescence labeling showed that EhPYC1 is located in the plastid. This result agrees with the prediction that a bipartite plastid-targeting signal is present that functions to deliver proteins into the four-membrane plastid of haptophyte algae. This is the first finding of a plastid-located PYC. These results indicate that E. huxleyi possesses a unique pathway to produce OAA catalyzed by PYC, and the pathway may provide carbon skeletons for amino acid biosynthesis in the plastid. A database search indicates that PYC genes are widespread in green algae, diatoms and brown algae, suggesting the crucial role of PYC in various aquatic phototrophs.

PHOTOINHIBITION OF PSII IN EMILIANIA HUXLEYI (HAPTOPHYTA) UNDER HIGH LIGHT STRESS: THE ROLES OF PHOTOACCLIMATION, PHOTOPROTECTION, AND PHOTOREPAIR(1).

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Ragni, Maria; Airs, Ruth L; Leonardos, Nikos; Geider, Richard J

2008-06-01

The response of the coccolithophorid Emiliania huxleyi (Lohmann) W. H. Hay et H. Mohler to acute exposure to high photon flux densities (PFD) was examined in terms of PSII photoinhibition, photoprotection, and photorepair. The time and light dependencies of these processes were characterized as a function of the photoacclimation state of the alga. Low-light (LL) acclimated cells displayed a higher degree of photoinhibition, measured as decline in Fv /Fm , than high-light (HL) acclimated cells. However, HL cultures were more susceptible to photodamage but also more capable of compensating for it by performing a faster repair cycle. The relation between gross photoinhibition (observed in the presence of an inhibitor of repair) and PFD to which the algae were exposed deviated from linearity at high PFD, which calls into question the universality of current concepts of photoinhibition in mechanistic models. The light dependence of the de-epoxidation state (DPS) of the xanthophyll cycle (XC) pigments on the timescale of hours was the same in cells acclimated to LL and HL. However, HL cells were more efficient in realizing nonphotochemical quenching (NPQ) on short timescales, most likely due to a larger XC pool. LL cells displayed an increase in the PSII effective cross-section (σPSII ) as a result of photoinhibition, which was observed also in HL cells when net photoinhibition was induced by blocking the D1 repair cycle. The link between σPSII and photoinhibition suggests that the population of PSII reaction centers (RCIIs) of E. huxleyi shares a common antenna, according to a "lake" organization of the light-harvesting complex. © 2008 Phycological Society of America.

The trade-off between the light-harvesting and photoprotective functions of fucoxanthin-chlorophyll proteins dominates light acclimation in Emiliania huxleyi (clone CCMP 1516).

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McKew, Boyd A; Davey, Phillip; Finch, Stewart J; Hopkins, Jason; Lefebvre, Stephane C; Metodiev, Metodi V; Oxborough, Kevin; Raines, Christine A; Lawson, Tracy; Geider, Richard J

2013-10-01

Mechanistic understanding of the costs and benefits of photoacclimation requires knowledge of how photophysiology is affected by changes in the molecular structure of the chloroplast. We tested the hypothesis that changes in the light dependencies of photosynthesis, nonphotochemical quenching and PSII photoinactivation arises from changes in the abundances of chloroplast proteins in Emiliania huxleyi strain CCMP 1516 grown at 30 (Low Light; LL) and 1000 (High Light; HL) μmol photons m(-2) s(-1) photon flux densities. Carbon-specific light-saturated gross photosynthesis rates were not significantly different between cells acclimated to LL and HL. Acclimation to LL benefited cells by increasing biomass-specific light absorption and gross photosynthesis rates under low light, whereas acclimation to HL benefited cells by reducing the rate of photoinactivation of PSII under high light. Differences in the relative abundances of proteins assigned to light-harvesting (Lhcf), photoprotection (LI818-like), and the photosystem II (PSII) core complex accompanied differences in photophysiology: specifically, Lhcf:PSII was greater under LL, whereas LI818:PSII was greater in HL. Thus, photoacclimation in E. huxleyi involved a trade-off amongst the characteristics of light absorption and photoprotection, which could be attributed to changes in the abundance and composition of proteins in the light-harvesting antenna of PSII. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Dynamic energy budget modeling reveals the potential of future growth and calcification for the coccolithophore Emiliania huxleyi in an acidified ocean.

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Muller, Erik B; Nisbet, Roger M

2014-06-01

Ocean acidification is likely to impact the calcification potential of marine organisms. In part due to the covarying nature of the ocean carbonate system components, including pH and CO2 and CO3(2-) levels, it remains largely unclear how each of these components may affect calcification rates quantitatively. We develop a process-based bioenergetic model that explains how several components of the ocean carbonate system collectively affect growth and calcification rates in Emiliania huxleyi, which plays a major role in marine primary production and biogeochemical carbon cycling. The model predicts that under the IPCC A2 emission scenario, its growth and calcification potential will have decreased by the end of the century, although those reductions are relatively modest. We anticipate that our model will be relevant for many other marine calcifying organisms, and that it can be used to improve our understanding of the impact of climate change on marine systems. © 2014 John Wiley & Sons Ltd.

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

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Seyedsayamdost, Mohammad R.; Case, Rebecca J.; Kolter, Roberto; Clardy, Jon

2012-01-01

Emiliania huxleyi, an environmentally important marine microalga, has a bloom- and-bust lifestyle in which massive algal blooms appear and fade. Phaeobacter gallaeciensis belongs to the roseobacter clade of α-Proteobacteria, whose populations wax and wane with that of E. huxleyi. Roseobacter are thought to promote algal growth by biosynthesizing and secreting antibiotics and growth stimulants (auxins). Here we show that P. gallaeciensis switches its secreted small molecule metabolism to the production of potent and selective algaecides, the roseobacticides, in response to p-coumaric acid, an algal lignin breakdown product that is symptomatic of aging algae. This switch converts P. gallaeciensis into an opportunistic pathogen of its algal host. PMID:21430694

Independence of nutrient limitation and carbon dioxide impacts on the Southern Ocean coccolithophore Emiliania huxleyi.

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Müller, Marius N; Trull, Thomas W; Hallegraeff, Gustaaf M

2017-08-01

Future oceanic conditions induced by anthropogenic greenhouse gas emissions include warming, acidification and reduced nutrient supply due to increased stratification. Some parts of the Southern Ocean are expected to show rapid changes, especially for carbonate mineral saturation. Here we compare the physiological response of the model coccolithophore Emiliania huxleyi (strain EHSO 5.14, originating from 50 o S, 149 o E) with pH/CO 2 gradients (mimicking ocean acidification ranging from 1 to 4 × current pCO 2 levels) under nutrient-limited (nitrogen and phosphorus) and -replete conditions. Both nutrient limitations decreased per cell photosynthesis (particulate organic carbon (POC) production) and calcification (particulate inorganic carbon (PIC) production) rates for all pCO 2 levels, with more than 50% reductions under nitrogen limitation. These impacts, however, became indistinguishable from nutrient-replete conditions when normalized to cell volume. Calcification decreased three-fold and linearly with increasing pCO 2 under all nutrient conditions, and was accompanied by a smaller ~30% nonlinear reduction in POC production, manifested mainly above 3 × current pCO 2 . Our results suggest that normalization to cell volume allows the major impacts of nutrient limitation (changed cell sizes and reduced PIC and POC production rates) to be treated independently of the major impacts of increasing pCO 2 and, additionally, stresses the importance of including cell volume measurements to the toolbox of standard physiological analysis of coccolithophores in field and laboratory studies.

Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle

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Alcolombri, Uria; Ben-Dor, Shifra; Feldmesser, Ester; Levin, Yishai; Tawfik, Dan S.; Vardi, Assaf

2015-06-01

Algal blooms produce large amounts of dimethyl sulfide (DMS), a volatile with a diverse signaling role in marine food webs that is emitted to the atmosphere, where it can affect cloud formation. The algal enzymes responsible for forming DMS from dimethylsulfoniopropionate (DMSP) remain unidentified despite their critical role in the global sulfur cycle. We identified and characterized Alma1, a DMSP lyase from the bloom-forming algae Emiliania huxleyi. Alma1 is a tetrameric, redox-sensitive enzyme of the aspartate racemase superfamily. Recombinant Alma1 exhibits biochemical features identical to the DMSP lyase in E. huxleyi, and DMS released by various E. huxleyi isolates correlates with their Alma1 levels. Sequence homology searches suggest that Alma1 represents a gene family present in major, globally distributed phytoplankton taxa and in other marine organisms.

Strain-specific responses of Emiliania huxleyi to changing seawater carbonate chemistry

Directory of Open Access Journals (Sweden)

P. Ziveri

2009-11-01

Full Text Available Four strains of the coccolithophore E. huxleyi (RCC1212, RCC1216, RCC1238, RCC1256 were grown in dilute batch culture at four CO2 levels ranging from ~200 μatm to ~1200 μatm. Growth rate, particulate organic carbon content, and particulate inorganic carbon content were measured, and organic and inorganic carbon production calculated. The four strains did not show a uniform response to carbonate chemistry changes in any of the analysed parameters and none of the four strains displayed a response pattern previously described for this species. We conclude that the sensitivity of different strains of E. huxleyi to acidification differs substantially and that this likely has a genetic basis. We propose that this can explain apparently contradictory results reported in the literature.

Infection of phytoplankton by aerosolized marine viruses

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Sharoni, Shlomit; Trainic, Miri; Schatz, Daniella; Lehahn, Yoav; Flores, Michel J.; Bidle, Kay D.; Ben-Dor, Shifra; Rudich, Yinon; Vardi, Assaf

2015-01-01

Marine viruses constitute a major ecological and evolutionary driving force in the marine ecosystems. However, their dispersal mechanisms remain underexplored. Here we follow the dynamics of Emiliania huxleyi viruses (EhV) that infect the ubiquitous, bloom-forming phytoplankton E. huxleyi and show that EhV are emitted to the atmosphere as primary marine aerosols. Using a laboratory-based setup, we showed that the dynamic of EhV aerial emission is strongly coupled to the host–virus dynamic in the culture media. In addition, we recovered EhV DNA from atmospheric samples collected over an E. huxleyi bloom in the North Atlantic, providing evidence for aerosolization of marine viruses in their natural environment. Decay rate analysis in the laboratory revealed that aerosolized viruses can remain infective under meteorological conditions prevailing during E. huxleyi blooms in the ocean, allowing potential dispersal and infectivity over hundreds of kilometers. Based on the combined laboratory and in situ findings, we propose that atmospheric transport of EhV is an effective transmission mechanism for spreading viral infection over large areas in the ocean. This transmission mechanism may also have an important ecological impact on the large-scale host–virus “arms race” during bloom succession and consequently the turnover of carbon in the ocean. PMID:25964340

Growth and Mortality of Coccolithophores during spring in the Celtic Sea

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Mayers, K.; Poulton, A. J.; Giering, S. L. C.; Daniels, C. J.; Wells, S. R.; Tarran, G.

2016-02-01

Coccolithophores are an important group of single celled protists which dominate pelagic calcite production, however little is currently known about the mortality rates within this group, or their importance in shelf seas regarding productivity and nutrient recycling. Measurements of coccolithophore calcification and cellular calcite quotas, as well as dilution experiments for microzooplankton grazing rates, were made during a spring cruise (April, 2015) in the Celtic Sea (NW European Shelf) and within an April bloom of Emiliania huxleyi. Calcite production and coccolithophore cell numbers showed a general positive trend throughout the progression of the spring bloom, ranging from 15 - 34µmol C m-3d-1 and 6 - 94 cells ml-1. Cell normalised calcification rates declined from 3 - 0.6 pmol C cell-1d-1 due to a shift from a mixed community to an E. huxleyi dominated one. Within the E. huxleyi bloom we recorded high daily calcite production (6049 µmol C m-3d-1) and cell normalised calcification of 3 pmol C cell-1d-1. This is significantly higher than E. huxleyi dominated sites in the Iceland Basin and more similar to a bloom on the Patagonian Shelf. Within the E. huxleyi bloom, mortality rates were 0.23 d-1 compared with growth rates of 0.29 d-1, meaning 80% of daily calcification was removed by grazers. In this study, coccolithophore mortality rates are presented from the central Celtic Sea throughout spring, and compared with an April E. huxleyi bloom in terms of species composition, trends in calcite production and composition of the phytoplankton community. These observations will potentially elucidate the role grazing plays in the fate of calcium carbonate, bloom formation and community composition.

Impact of calcification state on the inherent optical properties of Emiliania huxleyi coccoliths and coccolithophores

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Bi, Lei; Yang, Ping

2015-04-01

Understanding the inherent optical properties (IOPs) of coccoliths and coccolithophores is important in oceanic radiative transfer simulations and remote sensing implementations. In this study, the invariant imbedding T-matrix method (II-TM) is employed to investigate the IOPs of coccoliths and coccolithophores. The Emiliania huxleyi (Ehux) coccolith and coccolithophore models are built based on observed biometric parameters including the eccentricity, the number of slits, and the rim width of detached coccoliths. The calcification state that specifies the amount of calcium of a single coccolith is critical in the determination of the size-volume/mass relationship (note, the volume/mass of coccoltihs at different calcification states are different although the diameters are the same). The present results show that the calcification state, namely, under-calcification, normal-calcification, or over-calcification, significantly influences the backscattering cross section and the phase matrix. Furthermore, the linear depolarization ratio of the light scattered by coccoliths is sensitive to the degree of calcification, and provides a potentially valuable parameter for interpreting oceanic remote sensing data. The phase function of an ensemble of randomly oriented coccolithophores has a similar pattern to that of individual coccoliths, but the forward scattering is dominant in the coccolithophores due to the large geometric cross sections. The linear depolarization ratio associated with coccolithophores is found to be larger than that for coccoliths as polarization is more sensitive to multiple scattering than the phase function. The simulated coccolithophore phase matrix numerical results are compared with laboratory measurements. For scattering angles larger than 100°, an increase of the phase function with respect to the scattering angle is confirmed based on the present coccolithophore model while the spherical approximation fails.

Simulating the effects of light intensity and carbonate system composition on particulate organic and inorganic carbon production in Emiliania huxleyi.

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Holtz, Lena-Maria; Wolf-Gladrow, Dieter; Thoms, Silke

2015-05-07

Coccolithophores play an important role in the marine carbon cycle. Variations in light intensity and external carbonate system composition alter intracellular carbon fluxes and therewith the production rates of particulate organic and inorganic carbon. Aiming to find a mechanistic explanation for the interrelation between dissolved inorganic carbon fluxes and particulate carbon production rates, we develop a numerical cell model for Emiliania huxleyi, one of the most abundant coccolithophore species. The model consists of four cellular compartments, for each of which the carbonate system is resolved dynamically. The compartments are connected to each other and to the external medium via substrate fluxes across the compartment-confining membranes. By means of the model we are able to explain several pattern observed in particulate organic and inorganic carbon production rates for different strains and under different acclimation conditions. Particulate organic and inorganic carbon production rates for instance decrease at very low external CO2 concentrations. Our model suggests that this effect is caused mainly by reduced HCO3(-) uptake rates, not by CO2 limitation. The often observed decrease in particulate inorganic carbon production rates under Ocean Acidification is explained by a downregulation of cellular HCO3(-) uptake. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Detection of a variable intracellular acid-labile carbon pool in Thalassiosira weissflogii (Heterokontophyta) and Emiliania huxleyi (Haptophyta) in response to changes in the seawater carbon system.

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Isensee, Kirsten; Erez, Jonathan; Stoll, Heather M

2014-02-01

Accumulation of an intracellular pool of carbon (C(i) pool) is one strategy by which marine algae overcome the low abundance of dissolved CO2 (CO2 (aq) ) in modern seawater. To identify the environmental conditions under which algae accumulate an acid-labile C(i) pool, we applied a (14) C pulse-chase method, used originally in dinoflagellates, to two new classes of algae, coccolithophorids and diatoms. This method measures the carbon accumulation inside the cells without altering the medium carbon chemistry or culture cell density. We found that the diatom Thalassiosira weissflogii [(Grunow) G. Fryxell & Hasle] and a calcifying strain of the coccolithophorid Emiliania huxleyi [(Lohmann) W. W. Hay & H. P. Mohler] develop significant acid-labile C(i) pools. C(i) pools are measureable in cells cultured in media with 2-30 µmol l(-1) CO2 (aq), corresponding to a medium pH of 8.6-7.9. The absolute C(i) pool was greater for the larger celled diatoms. For both algal classes, the C(i) pool became a negligible contributor to photosynthesis once CO2 (aq) exceeded 30 µmol l(-1) . Combining the (14) C pulse-chase method and (14) C disequilibrium method enabled us to assess whether E. huxleyi and T. weissflogii exhibited thresholds for foregoing accumulation of DIC or reduced the reliance on bicarbonate uptake with increasing CO2 (aq) . We showed that the C(i) pool decreases with higher CO2 :HCO3 (-) uptake rates. © 2013 Scandinavian Plant Physiology Society.

Unusual Δ7,12,19 C35:3 Alkenone Produced by the Mutant Emiliania huxleyi strain CCMP2758 in Culture

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Zheng, Y.; Huang, Y.; Zhang, Y.; Dillon, J. T.

2015-12-01

Alkenones with chain length ranging from C37 to C40 are highly specific biomarkers for certain haptophyte algae in ocean and lake sediments and have been widely used for paleoclimate studies. Short chain alkenones (e.g., C35 and C36) have been found in environmental and culture samples but the origin and structures of these compounds are not fully understood. The benchmark marine alkenone producer, Emiliania huxleyi CCMP2758 strain (the mutant of strain CCMP1742, NEPCC55a) was reported to make 35:2 alkenone when cultured at 15 °C (Prahl et al., 2006). Here we show, when this strain is cultured at lower temperatures (e.g., 4°C), CCMP2758 produces large amount of 35:3 alkenone with unusual double bond positions of Δ7,12,19. We determined the double bond positions of the C35:3 methyl ketonee based on GC-MS analysis of cyclobutylimine derivatives and dimethyl disulfide derivatives respectively, and provide the first temperature calibrations based on the unsaturation ratios of C35 alkenones. Previous studies have found 35:2 alkenone with three methylene interruption in the Black Sea sediment, but it is the first time that an alkenone with a mixed three and five methylene interruption is found. The discovery of short chain alkenones with unusual double bond positions may shed new light to alkenone biosynthesis.

Strong shift from HCO3 (-) to CO 2 uptake in Emiliania huxleyi with acidification: new approach unravels acclimation versus short-term pH effects.

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Kottmeier, Dorothee M; Rokitta, Sebastian D; Tortell, Philippe D; Rost, Björn

2014-09-01

Effects of ocean acidification on Emiliania huxleyi strain RCC 1216 (calcifying, diploid life-cycle stage) and RCC 1217 (non-calcifying, haploid life-cycle stage) were investigated by measuring growth, elemental composition, and production rates under different pCO2 levels (380 and 950 μatm). In these differently acclimated cells, the photosynthetic carbon source was assessed by a (14)C disequilibrium assay, conducted over a range of ecologically relevant pH values (7.9-8.7). In agreement with previous studies, we observed decreased calcification and stimulated biomass production in diploid cells under high pCO2, but no CO2-dependent changes in biomass production for haploid cells. In both life-cycle stages, the relative contributions of CO2 and HCO3 (-) uptake depended strongly on the assay pH. At pH values ≤ 8.1, cells preferentially used CO2 (≥ 90 % CO2), whereas at pH values ≥ 8.3, cells progressively increased the fraction of HCO3 (-) uptake (~45 % CO2 at pH 8.7 in diploid cells; ~55 % CO2 at pH 8.5 in haploid cells). In contrast to the short-term effect of the assay pH, the pCO2 acclimation history had no significant effect on the carbon uptake behavior. A numerical sensitivity study confirmed that the pH-modification in the (14)C disequilibrium method yields reliable results, provided that model parameters (e.g., pH, temperature) are kept within typical measurement uncertainties. Our results demonstrate a high plasticity of E. huxleyi to rapidly adjust carbon acquisition to the external carbon supply and/or pH, and provide an explanation for the paradoxical observation of high CO2 sensitivity despite the apparently high HCO3 (-) usage seen in previous studies.

Light-Dependent Transcriptional Regulation of Genes of Biogeochemical Interest in the Diploid and Haploid Life Cycle Stages of Emiliania huxleyi▿ †

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Richier, Sophie; Kerros, Marie-Emmanuelle; de Vargas, Colomban; Haramaty, Liti; Falkowski, Paul G.; Gattuso, Jean-Pierre

2009-01-01

The expression of genes of biogeochemical interest in calcifying and noncalcifying life stages of the coccolithophore Emiliania huxleyi was investigated. Transcripts potentially involved in calcification were tested through a light-dark cycle. These transcripts were more abundant in calcifying cells and were upregulated in the light. Their application as potential candidates for in situ biogeochemical proxies is also suggested. PMID:19304825

Impact of calcification state on the inherent optical properties of Emiliania huxleyi coccoliths and coccolithophores

International Nuclear Information System (INIS)

Bi, Lei; Yang, Ping

2015-01-01

Understanding the inherent optical properties (IOPs) of coccoliths and coccolithophores is important in oceanic radiative transfer simulations and remote sensing implementations. In this study, the invariant imbedding T-matrix method (II-TM) is employed to investigate the IOPs of coccoliths and coccolithophores. The Emiliania huxleyi (Ehux) coccolith and coccolithophore models are built based on observed biometric parameters including the eccentricity, the number of slits, and the rim width of detached coccoliths. The calcification state that specifies the amount of calcium of a single coccolith is critical in the determination of the size–volume/mass relationship (note, the volume/mass of coccoltihs at different calcification states are different although the diameters are the same). The present results show that the calcification state, namely, under-calcification, normal-calcification, or over-calcification, significantly influences the backscattering cross section and the phase matrix. Furthermore, the linear depolarization ratio of the light scattered by coccoliths is sensitive to the degree of calcification, and provides a potentially valuable parameter for interpreting oceanic remote sensing data. The phase function of an ensemble of randomly oriented coccolithophores has a similar pattern to that of individual coccoliths, but the forward scattering is dominant in the coccolithophores due to the large geometric cross sections. The linear depolarization ratio associated with coccolithophores is found to be larger than that for coccoliths as polarization is more sensitive to multiple scattering than the phase function. The simulated coccolithophore phase matrix numerical results are compared with laboratory measurements. For scattering angles larger than 100°, an increase of the phase function with respect to the scattering angle is confirmed based on the present coccolithophore model while the spherical approximation fails. - Highlights: • Realistic

Effect of CO2 on the properties and sinking velocity of aggregates of the coccolithophore Emiliania huxleyi

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A. Engel

2010-03-01

Full Text Available Coccolithophores play an important role in organic matter export due to their production of the mineral calcite that can act as ballast. Recent studies indicated that calcification in coccolithophores may be affected by changes in seawater carbonate chemistry. We investigated the influence of CO2 on the aggregation and sinking behaviour of the coccolithophore Emiliania huxleyi (PML B92/11 during a laboratory experiment. The coccolithophores were grown under low (~180 μatm, medium (~380 μatm, and high (~750 μatm CO2 conditions. Aggregation of the cells was promoted using roller tables. Size and settling velocity of aggregates were determined during the incubation using video image analysis. Our results indicate that aggregate properties are sensitive to changes in the degree of ballasting, as evoked by ocean acidification. Average sinking velocity was highest for low CO2 aggregates (~1292 m d−1 that also had the highest particulate inorganic to particulate organic carbon (PIC/POC ratio. Lowest PIC/POC ratios and lowest sinking velocity (~366 m d−1 at comparable sizes were observed for aggregates of the high CO2 treatment. Aggregates of the high CO2 treatment showed a 4-fold lower excess density (~4.2×10−4 g cm−3 when compared to aggregates from the medium and low CO2 treatments (~1.7 g×10−3 cm−3. We also observed that more aggregates formed in the high CO2 treatment, and that those aggregates contained more bacteria than aggregates in the medium and low CO2 treatment. If applicable to the future ocean, our findings suggest that a CO2 induced reduction of the calcite content of aggregates could weaken the deep export of organic matter in the ocean, particularly in areas dominated by coccolithophores.

Ocean acidification affects redox-balance and ion-homeostasis in the life-cycle stages of Emiliania huxleyi.

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Sebastian D Rokitta

Full Text Available Ocean Acidification (OA has been shown to affect photosynthesis and calcification in the coccolithophore Emiliania huxleyi, a cosmopolitan calcifier that significantly contributes to the regulation of the biological carbon pumps. Its non-calcifying, haploid life-cycle stage was found to be relatively unaffected by OA with respect to biomass production. Deeper insights into physiological key processes and their dependence on environmental factors are lacking, but are required to understand and possibly estimate the dynamics of carbon cycling in present and future oceans. Therefore, calcifying diploid and non-calcifying haploid cells were acclimated to present and future CO(2 partial pressures (pCO(2; 38.5 Pa vs. 101.3 Pa CO(2 under low and high light (50 vs. 300 µmol photons m(-2 s(-1. Comparative microarray-based transcriptome profiling was used to screen for the underlying cellular processes and allowed to follow up interpretations derived from physiological data. In the diplont, the observed increases in biomass production under OA are likely caused by stimulated production of glycoconjugates and lipids. The observed lowered calcification under OA can be attributed to impaired signal-transduction and ion-transport. The haplont utilizes distinct genes and metabolic pathways, reflecting the stage-specific usage of certain portions of the genome. With respect to functionality and energy-dependence, however, the transcriptomic OA-responses resemble those of the diplont. In both life-cycle stages, OA affects the cellular redox-state as a master regulator and thereby causes a metabolic shift from oxidative towards reductive pathways, which involves a reconstellation of carbon flux networks within and across compartments. Whereas signal transduction and ion-homeostasis appear equally OA-sensitive under both light intensities, the effects on carbon metabolism and light physiology are clearly modulated by light availability. These interactive effects

Ocean acidification affects redox-balance and ion-homeostasis in the life-cycle stages of Emiliania huxleyi.

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Rokitta, Sebastian D; John, Uwe; Rost, Björn

2012-01-01

Ocean Acidification (OA) has been shown to affect photosynthesis and calcification in the coccolithophore Emiliania huxleyi, a cosmopolitan calcifier that significantly contributes to the regulation of the biological carbon pumps. Its non-calcifying, haploid life-cycle stage was found to be relatively unaffected by OA with respect to biomass production. Deeper insights into physiological key processes and their dependence on environmental factors are lacking, but are required to understand and possibly estimate the dynamics of carbon cycling in present and future oceans. Therefore, calcifying diploid and non-calcifying haploid cells were acclimated to present and future CO(2) partial pressures (pCO(2); 38.5 Pa vs. 101.3 Pa CO(2)) under low and high light (50 vs. 300 µmol photons m(-2) s(-1)). Comparative microarray-based transcriptome profiling was used to screen for the underlying cellular processes and allowed to follow up interpretations derived from physiological data. In the diplont, the observed increases in biomass production under OA are likely caused by stimulated production of glycoconjugates and lipids. The observed lowered calcification under OA can be attributed to impaired signal-transduction and ion-transport. The haplont utilizes distinct genes and metabolic pathways, reflecting the stage-specific usage of certain portions of the genome. With respect to functionality and energy-dependence, however, the transcriptomic OA-responses resemble those of the diplont. In both life-cycle stages, OA affects the cellular redox-state as a master regulator and thereby causes a metabolic shift from oxidative towards reductive pathways, which involves a reconstellation of carbon flux networks within and across compartments. Whereas signal transduction and ion-homeostasis appear equally OA-sensitive under both light intensities, the effects on carbon metabolism and light physiology are clearly modulated by light availability. These interactive effects can be

Isolation and Characterization of a Double Stranded DNA Megavirus Infecting the Toxin-Producing Haptophyte Prymnesium parvum

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Ben A. Wagstaff

2017-03-01

Full Text Available Prymnesium parvum is a toxin-producing haptophyte that causes harmful algal blooms globally, leading to large-scale fish kills that have severe ecological and economic implications. For the model haptophyte, Emiliania huxleyi, it has been shown that large dsDNA viruses play an important role in regulating blooms and therefore biogeochemical cycling, but much less work has been done looking at viruses that infect P. parvum, or the role that these viruses may play in regulating harmful algal blooms. In this study, we report the isolation and characterization of a lytic nucleo-cytoplasmic large DNA virus (NCLDV collected from the site of a harmful P. parvum bloom. In subsequent experiments, this virus was shown to infect cultures of Prymnesium sp. and showed phylogenetic similarity to the extended Megaviridae family of algal viruses.

Molecular Biogeochemistry of Modern and Ancient Marine Microbes

Science.gov (United States)

2010-02-01

jahnii AF163148 Isochrysis sp. AB183617 Emiliania huxleyi M87327 Chrysochromulina campanulifera AJ246273 Chrysochromulina throndsenii AJ246277... Emiliania huxleyi Skeletonema costatum hotChlE9, syn-A hotChlC1, med4-B hotChlD9, med4-B hotChlD12, med4-B hotChlE5, syn-A hotChlE4, syn-A hotChlA9, med4...straight-chain C37- C39 methyl and ethyl ketones in marine sediments and a coccolithophore Emiliania huxleyi . Advances in Organic Geochemistry 1979

Photosynthetic carbon assimilation in the coccolithophorid Emiliania huxleyi (Haptophyta): Evidence for the predominant operation of the c3 cycle and the contribution of {beta}-carboxylases to the active anaplerotic reaction.

Science.gov (United States)

Tsuji, Yoshinori; Suzuki, Iwane; Shiraiwa, Yoshihiro

2009-02-01

The coccolithophorid Emiliania huxleyi (Haptophyta) is a representative and unique marine phytoplankton species that fixes inorganic carbon by photosynthesis and calci-fication. We examined the initial process of photosynthetic carbon assimilation by analyses of metabolites, enzymes and genes. When the cells were incubated with a radioactive substrate (2.3 mM NaH(14)CO(3)) for 10 s under illumination, 70% of the (14)C was incorporated into the 80% methanol-soluble fraction. Eighty-five and 15% of (14)C in the soluble fraction was incorporated into phosphate esters (P-esters), including the C(3) cycle intermediates and a C(4) compound, aspartate, respectively. A pulse-chase experiment showed that (14)C in P-esters was mainly transferred into lipids, while [(14)C]aspartate, [(14)C]alanine and [(14)C]glutamate levels remained almost constant. These results indicate that the C(3) cycle functions as the initial pathway of carbon assimilation and that beta-carboxylation contributes to the production of amino acids in subsequent metabolism. Transcriptional analysis of beta-carboxylases such as pyruvate carboxylase (PYC), phosphoenolpyruvate carboxylase (PEPC) and phosphoenolpyruvate carboxykinase (PEPCK) revealed that PYC and PEPC transcripts were greatly increased under illumination, whereas the PEPCK transcript decreased remarkably. PEPC activity was higher in light-grown cells than in dark-adapted cells. PYC activity was detected in isolated chloroplasts of light-grown cells. According to analysis of their deduced N-terminal sequence, PYC and PEPC are predicted to be located in the chloroplasts and mitochondria, respectively. These results suggest that E. huxleyi possesses unique carbon assimila-tion mechanisms in which beta-carboxylation by both PYC and PEPC plays important roles in different organelles.

Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in in vitro CaCO3 crystallization.

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Kayano, Keisuke; Saruwatari, Kazuko; Kogure, Toshihiro; Shiraiwa, Yoshihiro

2011-02-01

Marine coccolithophorids (Haptophyceae) produce calcified scales "coccoliths" which are composed of CaCO(3) and coccolith polysaccharides (CP) in the coccolith vesicles. CP was previously reported to be composed of uronic acids and sulfated residues, etc. attached to the polymannose main chain. Although anionic polymers are generally known to play key roles in biomineralization process, there is no experimental data how CP contributes to calcite crystal formation in the coccolithophorids. CP used was isolated from the most abundant coccolithophorid, Emiliania huxleyi. CaCO(3) crystallization experiment was performed on agar template layered onto a plastic plate that was dipped in the CaCO(3) crystallization solution. The typical rhombohedral calcite crystals were formed in the absence of CP. CaCO(3) crystals formed on the naked plastic plate were obviously changed to stick-like shapes when CP was present in the solution. EBSD analysis proved that the crystal is calcite of which c-axis was elongated. CP in the solution stimulated the formation of tabular crystals with flat edge in the agarose gel. SEM and FIB-TEM observations showed that the calcite crystals were formed in the gel. The formation of crystals without flat edge was stimulated when CP was preliminarily added in the gel. These observations suggest that CP has two functions: namely, one is to elongate the calcite crystal along c-axis and another is to induce tabular calcite crystal formation in the agarose gel. Thus, CP may function for the formation of highly elaborate species-specific structures of coccoliths in coccolithophorids.

A minireview of marine algal virus — Coccolithoviruses

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Liu, Jingwen; Xu, Miaomiao; Zheng, Tianling

2015-04-01

Coccolithophorid is unicellular marine microalgae with a global distribution in temperate and sub-temperate oceanic regions and has the ability to produce `the coccoliths'. It is considered to be the second most productive calcifying organism on earth and becoming an important factor in the global carbonate cycle. Emiliania huxleyi is one of the only two bloom-forming coccolithophores and becomes a species crucial to the study of global biogeochemical cycles and climate modeling. Coccolithoviruse is a recently discovered group of viruses infecting the marine coccolithophorid E. huxleyi. They are a major cause of coccolithophore bloom termination, and DMSP concentration is increasing in the process of viral lysis. Phylogenetic evidences support that some genes are functional both in E. huxleyi and its virus (EhV). Horizontal gene transfer (HGT) of multiple functionally coupled enzymes occurs in E. huxleyi and its DNA virus EhV has been confirmed, which contributes to the diversification and adaptation of plankton in the oceans and also critically regulates virus-host infection by allowing viruses to control host metabolic pathways for their replication. Therefore, it is of particular interest to understand this host-virus interaction. On this issue, we have made a minireview of coccolithoviruses focusing on the basic characteristics, phylogenesis, horizontal gene transfer and the interaction between the host and its viruses, as well as its important role in global biogeochemical cycling.

Nannoplankton and uranium concentration relations in the Black Sea Deposits

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Vedia TOKER

1983-12-01

Full Text Available Nannoplanktons obtained from sixty-two core samples taken from twenty-three holes penetrated in the Southern part of Black Sea were investigated in this work. Twelve species belonging to the Emiliania huxleyi zone (NN 21-Holocene were determined. Emiliania huxleyi (Lohmann came into existence in Black Sea three thousand years ago and is very abundant in these sediments. This study clearly showed that uranium concentration increases with increasing nannoplankton content of the sediments. It is also observed that the uranium oxide (U3O8 contents of the Emiliania huxleyi (Lohmann accumulations on the abyssal plains are higher than those other sediments in the same environments.

Improved monitoring of phytoplankton bloom dynamics in a Norwegian fjord by integrating satellite data, pigment analysis, and Ferrybox data with a coastal observation network

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Volent, Zsolt; Johnsen, Geir; Hovland, Erlend K.; Folkestad, Are; Olsen, Lasse M.; Tangen, Karl; Sørensen, Kai

2011-01-01

Monitoring of the coastal environment is vitally important as these areas are of economic value and at the same time highly exposed to anthropogenic influence, in addition to variation of environmental variables. In this paper we show how the combination of bio-optical data from satellites, analysis of water samples, and a ship-mounted automatic flow-through sensor system (Ferrybox) can be used to detect and monitor phytoplankton blooms both spatially and temporally. Chlorophyll a (Chl a) data and turbidity from Ferrybox are combined with remotely sensed Chl a and total suspended matter from the MERIS instrument aboard the satellite ENVISAT (ENVIronmental SATellite) European Space Agency. Data from phytoplankton speciation and enumeration obtained by a national coastal observation network consisting of fish farms and the Norwegian Food Safety Authority are supplemented with data on phytoplankton pigments. All the data sets are then integrated in order to describe phytoplankton bloom dynamics in a Norwegian fjord over a growth season, with particular focus on Emiliania huxleyi. The approach represents a case example of how coastal environmental monitoring can be improved with existing instrument platforms. The objectives of the paper is to present the operative phytoplankton monitoring scheme in Norway, and to present an improved model of how such a scheme can be designed for a large part of the world's coastal areas.

Dynamic metabolic exchange governs a marine algal-bacterial interaction.

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Segev, Einat; Wyche, Thomas P; Kim, Ki Hyun; Petersen, Jörn; Ellebrandt, Claire; Vlamakis, Hera; Barteneva, Natasha; Paulson, Joseph N; Chai, Liraz; Clardy, Jon; Kolter, Roberto

2016-11-18

Emiliania huxleyi is a model coccolithophore micro-alga that generates vast blooms in the ocean. Bacteria are not considered among the major factors influencing coccolithophore physiology. Here we show through a laboratory model system that the bacterium Phaeobacter inhibens , a well-studied member of the Roseobacter group, intimately interacts with E. huxleyi. While attached to the algal cell, bacteria initially promote algal growth but ultimately kill their algal host. Both algal growth enhancement and algal death are driven by the bacterially-produced phytohormone indole-3-acetic acid. Bacterial production of indole-3-acetic acid and attachment to algae are significantly increased by tryptophan, which is exuded from the algal cell. Algal death triggered by bacteria involves activation of pathways unique to oxidative stress response and programmed cell death. Our observations suggest that bacteria greatly influence the physiology and metabolism of E. huxleyi. Coccolithophore-bacteria interactions should be further studied in the environment to determine whether they impact micro-algal population dynamics on a global scale.

Intraspecific Adaptations to Thermal Gradients in a Cosmopolitan Coccolithophore

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Matson, P. G.; Ladd, T. M.; Iglesias-Rodriguez, D.

2016-02-01

The species concept in marine phytoplankton has enormous biological complexity. Differences in genomic, morphological, physiological, biogeochemical, and ecological/biogeographic properties between strains of the same species can be comparable or even exceed those between species. This complexity is particularly pronounced in the cosmopolitan coccolithophore species Emiliania huxleyi. This bloom-forming species is found at nearly every latitude in a variety of environments including upwelling regions, and exposed to large temperature gradients. We present results from experiments using two strains of E. huxleyi isolated from different latitudes and environmental conditions. Tests involved semi-continuous culturing in lab manipulation experiments to determine how carbon fixation, growth, and morphology respond to temperature-driven alterations in physico-chemical conditions. This talk will discuss the observed differences in physiology within an ecological context and the implications of these biogeochemical differences in modeling carbon fluxes driven by phytoplankton.

Evidence for methane production by marine algae (Emiliana huxleyi) and its implication for the methane paradox in oxic waters

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Lenhart, K.; Klintzsch, T.; Langer, G.; Nehrke, G.; Bunge, M.; Schnell, S.; Keppler, F.

2015-12-01

Methane (CH4), an important greenhouse gas that affects radiation balance and consequently the earth's climate, still has uncertainties in its sinks and sources. The world's oceans are considered to be a source of CH4 to the atmosphere, although the biogeochemical processes involved in its formation are not fully understood. Several recent studies provided strong evidence of CH4 production in oxic marine and freshwaters but its source is still a topic of debate. Studies of CH4 dynamics in surface waters of oceans and large lakes have concluded that pelagic CH4 supersaturation cannot be sustained either by lateral inputs from littoral or benthic inputs alone. However, frequently regional and temporal oversaturation of surface waters occurs. This comprises the observation of a CH4 oversaturating state within the surface mixed layer, sometimes also termed the "oceanic methane paradox". In this study we considered marine algae as a possible direct source of CH4. Therefore, the coccolithophore Emiliania huxleyi was grown under controlled laboratory conditions and supplemented with two 13C-labelled carbon substrates, namely bicarbonate and a position-specific 13C-labelled methionine (R-S-13CH3). The CH4 production was 0.7 μg POC g-1 d-1, or 30 ng g-1 POC h-1. After supplementation of the cultures with the 13C labelled substrate, the isotope label was observed in headspace-CH4. Moreover, the absence of methanogenic archaea within the algal culture and the oxic conditions during CH4 formation suggest that marine algae such as Emiliania huxleyi contribute to the observed spatial and temporal restricted CH4 oversaturation in ocean surface waters.

Effect of Organic Fe-Ligands, Released by Emiliania huxleyi, on Fe(II Oxidation Rate in Seawater Under Simulated Ocean Acidification Conditions: A Modeling Approach

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Guillermo Samperio-Ramos

2018-06-01

Full Text Available The potential effect of ocean acidification on the exudation of organic matter by phytoplankton and, consequently, on the iron redox chemistry is largely unknown. In this study, the coccolithophorid Emiliania huxleyi was exposed to different pCO2 conditions (225–900 μatm, in order to determine the role of natural organic ligands on the Fe(II oxidation rate. Oxidation kinetics of Fe(II were studied as a function of pH (7.75–8.25 and dissolved organic carbon levels produced (0–141.11 μmol C L−1 during the different growth stages. The Fe(II oxidation rate always decreased in the presence of exudates as compared to that in the exudates-free seawater. The organic ligands present in the coccolithophorid exudates were responsible for this decrease. The oxidation of Fe(II in artificial seawater was also investigated at nanomolar levels over a range of pH (7.75–8.25 at 25°C in the presence of different glucuronic acid concentrations. Dissolved uronic acids (DUA slightly increased the experimental rate compared to control artificial seawater (ASW which can be ascribed to the stabilization of the oxidized form by chelation. This behavior was a function of the Fe(II:DUA ratio and was a pH dependent process. A kinetic model in ASW, with a single organic ligand, was applied for computing the equilibrium constant (log KFeCHO+ = 3.68 ± 0.81 M−1 and the oxidation rate (log kFeCHO+ = 3.28 ± 0.41 M−1 min−1 for the Fe(II-DUA complex (FeCHO+, providing an excellent description of data obtained over a wide range of DUA concentrations and pH conditions. Considering the Marcus theory the Fe(III complexing constant with DUA was limited to between 1013 and 1016. For the seawater enriched with exudates of E. huxleyi a second kinetic modeling approach was carried out for fitting the Fe(II speciation, and the contribution of each Fe(II species to the overall oxidation rate as a function of the pH/pCO2 conditions. The influence of organic ligands in the

Effects of CO2 on particle size distribution and phytoplankton abundance during a mesocosm bloom experiment (PeECE II

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M. Schartau

2008-04-01

Full Text Available The influence of seawater carbon dioxide (CO2 concentration on the size distribution of suspended particles (2–60 μm and on phytoplankton abundance was investigated during a mesocosm experiment at the large scale facility (LFS in Bergen, Norway, in the frame of the Pelagic Ecosystem CO2 Enrichment study (PeECE II. In nine outdoor enclosures the partial pressure of CO2 in seawater was modified by an aeration system to simulate past (~190 μatm CO2, present (~370 μatm CO2 and future (~700 μatm CO2 CO2 conditions in triplicates. Due to the initial addition of inorganic nutrients, phytoplankton blooms developed in all mesocosms and were monitored over a period of 19 days. Seawater samples were collected daily for analysing the abundance of suspended particles and phytoplankton with the Coulter Counter and with Flow Cytometry, respectively. During the bloom period, the abundance of small particles (2 levels. At that time, a direct relationship between the total-surface-to-total-volume ratio of suspended particles and DIC concentration was determined for all mesocosms. Significant changes with respect to the CO2 treatment were also observed in the phytoplankton community structure. While some populations such as diatoms seemed to be insensitive to the CO2 treatment, others like Micromonas spp. increased with CO2, or showed maximum abundance at present day CO2 (i.e. Emiliania huxleyi. The strongest response to CO2 was observed in the abundance of small autotrophic nano-plankton that strongly increased during the bloom in the past CO2 mesocosms. Together, changes in particle size distribution and phytoplankton community indicate a complex interplay between the ability of the cells to physiologically respond to changes in CO2 and size selection. Size of cells is of general importance for a variety of processes in marine systems such as diffusion-limited uptake of substrates, resource allocation, predator-prey interaction, and gravitational settling

Host–virus dynamics and subcellular controls of cell fate in a natural coccolithophore population

Science.gov (United States)

Vardi, Assaf; Haramaty, Liti; Van Mooy, Benjamin A. S.; Fredricks, Helen F.; Kimmance, Susan A.; Larsen, Aud; Bidle, Kay D.

2012-01-01

Marine viruses are major evolutionary and biogeochemical drivers in marine microbial foodwebs. However, an in-depth understanding of the cellular mechanisms and the signal transduction pathways mediating host–virus interactions during natural bloom dynamics has remained elusive. We used field-based mesocosms to examine the “arms race” between natural populations of the coccolithophore Emiliania huxleyi and its double-stranded DNA-containing coccolithoviruses (EhVs). Specifically, we examined the dynamics of EhV infection and its regulation of cell fate over the course of bloom development and demise using a diverse suite of molecular tools and in situ fluorescent staining to target different levels of subcellular resolution. We demonstrate the concomitant induction of reactive oxygen species, caspase-specific activity, metacaspase expression, and programmed cell death in response to the accumulation of virus-derived glycosphingolipids upon infection of natural E. huxleyi populations. These subcellular responses to viral infection simultaneously resulted in the enhanced production of transparent exopolymer particles, which can facilitate aggregation and stimulate carbon flux. Our results not only corroborate the critical role for glycosphingolipids and programmed cell death in regulating E. huxleyi–EhV interactions, but also elucidate promising molecular biomarkers and lipid-based proxies for phytoplankton host–virus interactions in natural systems. PMID:23134731

Phytoplankton growth inhibited by the toxic and bacterivorous ciliate

NARCIS (Netherlands)

Schaafsma, F.L.; Peperzak, L.

2013-01-01

The ubiquitous marine ciliate Uronema marinum is mainly bacterivorous. It was therefore surprising that in a ciliate-contaminated experiment the growth rate of the phytoplankton species Emiliania huxleyi was significantly reduced. As U. marinum does not ingest E. huxleyi cells, their growth

Phytoplankton growth inhibited by the toxic and bacterivorous ciliate Uronema marinum (Protozoa, Ciliophora)

NARCIS (Netherlands)

Schaafsma, F. L.; Peperzak, L.

2013-01-01

The ubiquitous marine ciliate Uronema marinum is mainly bacterivorous. It was therefore surprising that in a ciliate-contaminated experiment the growth rate of the phytoplankton species Emiliania huxleyi was significantly reduced. As U. marinum does not ingest E. huxleyi cells, their growth

Change in coccolith morphology by responding to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi Seas

Science.gov (United States)

Saruwatari, K.; Satoh, M.; Harada, N.; Suzuki, I.; Shiraiwa, Y.

2015-11-01

Strains of the coccolithophore Emiliania huxleyi (Haptophyta) collected from the subarctic North Pacific and Arctic Oceans during the R/V MIRAI cruise in 2010 (MR10-05) were established as clone cultures and have been maintained in the laboratory at 15 °C and 32 ‰ salinity. To study the physiological responses of coccolith formation to changes in temperature and salinity, growth experiments and morphometric investigations were performed on two strains of MR57N isolated from the northern Bering Sea (56°58' N, 167°11' W) and MR70N at the Chukchi Sea (69°99' N, 168° W). This is the first report of a detailed morphometric and morphological investigation of Arctic Ocean coccolithophore strains. The specific growth rates at the logarithmic growth phases in both strains markedly increased as temperature was elevated from 5 to 20 °C, although coccolith productivity (the percentage of calcified cells) was similar at 10-20 % at all temperatures. On the other hand, the specific growth rate of strain MR70N was affected less by changes in salinity in the range 26-35 ‰, but the proportion of calcified cells decreased at high and low salinities. According to scanning electron microscopy (SEM) observations, coccolith morphotypes can be categorized into Type B/C on the basis of their biometrical parameters, such as length of the distal shield (LDS), length of the inner central area (LICA), and the thickness of distal shield elements. The central area elements of coccoliths varied from grilled type to closed type when temperature was increased or salinity was decreased, and coccolith size decreased simultaneously. Coccolithophore cell size also decreased with increasing temperature, although the variation in cell size was slightly greater at the lower salinity level. This indicates that subarctic and arctic coccolithophore strains can survive in a wide range of seawater temperatures and at lower salinities due to their marked morphometric adaptation ability. Because all

Coccolithophore surface distributions in the North Atlantic and their modulation of the air-sea flux of CO2 from 10 years of satellite Earth observation data

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J. D. Shutler

2013-04-01

Full Text Available Coccolithophores are the primary oceanic phytoplankton responsible for the production of calcium carbonate (CaCO3. These climatically important plankton play a key role in the oceanic carbon cycle as a major contributor of carbon to the open ocean carbonate pump (~50% and their calcification can affect the atmosphere-to-ocean (air-sea uptake of carbon dioxide (CO2 through increasing the seawater partial pressure of CO2 (pCO2. Here we document variations in the areal extent of surface blooms of the globally important coccolithophore, Emiliania huxleyi, in the North Atlantic over a 10-year period (1998–2007, using Earth observation data from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS. We calculate the annual mean sea surface areal coverage of E. huxleyi in the North Atlantic to be 474 000 ± 104 000 km2, which results in a net CaCO3 carbon (CaCO3-C production of 0.14–1.71 Tg CaCO3-C per year. However, this surface coverage (and, thus, net production can fluctuate inter-annually by −54/+8% about the mean value and is strongly correlated with the El Niño/Southern Oscillation (ENSO climate oscillation index (r=0.75, pE. huxleyi blooms in the North Atlantic can increase the pCO2 and, thus, decrease the localised air-sea flux of atmospheric CO2. In regions where the blooms are prevalent, the average reduction in the monthly air-sea CO2 flux can reach 55%. The maximum reduction of the monthly air-sea CO2 flux in the time series is 155%. This work suggests that the high variability, frequency and distribution of these calcifying plankton and their impact on pCO2 should be considered if we are to fully understand the variability of the North Atlantic air-to-sea flux of CO2. We estimate that these blooms can reduce the annual N. Atlantic net sink atmospheric CO2 by between 3–28%.

Change in coccolith size and morphology due to response to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi seas

Science.gov (United States)

Saruwatari, Kazuko; Satoh, Manami; Harada, Naomi; Suzuki, Iwane; Shiraiwa, Yoshihiro

2016-05-01

Strains of the coccolithophore Emiliania huxleyi (Haptophyta) collected from the subarctic North Pacific and Arctic oceans in 2010 were established as clone cultures and have been maintained in the laboratory at 15 °C and 32 ‰ salinity. To study the physiological responses of coccolith formation to changes in temperature and salinity, growth experiments and morphometric investigations were performed on two strains, namely MR57N isolated from the northern Bering Sea and MR70N at the Chukchi Sea. This is the first report of a detailed morphometric and morphological investigation of Arctic Ocean coccolithophore strains. The specific growth rates at the logarithmic growth phases in both strains markedly increased as temperature was elevated from 5 to 20 °C, although coccolith productivity (estimated as the percentage of calcified cells) was similar at 10-20 % at all temperatures. On the other hand, the specific growth rate of MR70N was affected less by changes in salinity in the range 26-35 ‰, but the proportion of calcified cells decreased at high and low salinities. According to scanning electron microscopy (SEM) observations, coccolith morphotypes can be categorized into Type B/C on the basis of their biometrical parameters. The central area elements of coccoliths varied from thin lath type to well-calcified lath type when temperature was increased or salinity was decreased, and coccolith size decreased simultaneously. Coccolithophore cell size also decreased with increasing temperature, although the variation in cell size was slightly greater at the lower salinity level. This indicates that subarctic and arctic coccolithophore strains can survive in a wide range of seawater temperatures and at lower salinities with change in their morphology. Because all coccolith biometric parameters followed the scaling law, the decrease in coccolith size was caused simply by the reduced calcification. Taken together, our results suggest that calcification productivity may

Cytochemical and x-ray microanalysis studies of intracellular calcium pools in scale-bearing cells of the coccolithophorid emiliana huxleyi

International Nuclear Information System (INIS)

Wal, P. van der; Bruijn, W.C. de; Westbroek, P.

1985-01-01

Emiliania huxleyi is a coccolithophorid with a life cycle including a stage characterized by the occurrence of a scale-bearing cell type. The scales are composed of organic material and are produced in the cisternae of the Golgi apparatus. The present report deals with the ultrastructural calcium localization in scale-bearing cells using cation-precipitating agents. Cations were precipitated either with potassium carbonate, or potassium phosphate, and then with potassium pyroantimonate. The distribution of electron-opaque deposits was the same when visualized by all four techniques. The most extensive deposits occurred in the Golgi apparatus, the 'peripheral space' (a cellular compartment totally encompassing the protoplast), the multivesicular bodies, and the cell vacuole. X-ray microanalysis revealed that calcium was a constituent of the electron-opaque deposits. The uptake and transport of calcium, as universal functions of the Golgi apparatus, are discussed. (Author)

The Influence of Growth Rate on 2H/1H Fractionation in Continuous Cultures of the Coccolithophorid Emiliania huxleyi and the Diatom Thalassiosira pseudonana.

Science.gov (United States)

Sachs, Julian P; Kawka, Orest E

2015-01-01

The hydrogen isotope (2H/1H) ratio of lipids from phytoplankton is a powerful new tool for reconstructing hydroclimate variations in the geologic past from marine and lacustrine sediments. Water 2H/1H changes are reflected in lipid 2H/1H changes with R2 > 0.99, and salinity variations have been shown to cause about a 1‰ change in lipid δ2H values per unit (ppt) change in salinity. Less understood are the effects of growth rate, nutrient limitation and light on 2H/1H fractionation in phytoplankton. Here we present the first published study of growth rate effects on 2H/1H fractionation in the lipids of coccolithophorids grown in continuous cultures. Emiliania huxleyi was cultivated in steady state at four growth rates and the δ2H value of individual alkenones (C37:2, C37:3, C38:2, C38:3), fatty acids (C14:0, C16:0, C18:0), and 24-methyl cholest-5,22-dien-3β-ol (brassicasterol) were measured. 2H/1H fractionation increased in all lipids as growth rate increased by 24‰ to 79‰ (div d-1)-1. We attribute this response to a proportional increase in the fraction of NADPH from Photosystem I (PS1) of photosynthesis relative to NADPH from the cytosolic oxidative pentose phosphate (OPP) pathway in the synthesis of lipids as growth rate increases. A 3-endmember model is presented in which lipid hydrogen comes from NADPH produced in PS1, NADPH produced by OPP, and intracellular water. With published values or best estimates of the fractionation factors for these sources (αPS1 = 0.4, αOPP = 0.75, and αH2O = 0) and half of the hydrogen in a lipid derived from water the model indicates αlipid = 0.79. This value is within the range measured for alkenones (αalkenone = 0.77 to 0.81) and fatty acids (αFA = 0.75 to 0.82) in the chemostat cultures, but is greater than the range for brassicasterol (αbrassicasterol = 0.68 to 0.72). The latter is attributed to a greater proportion of hydrogen from NADPH relative to water in isoprenoid lipids. The model successfully explains

The stereochemistry of chlorophyll-c₃ from the haptophyte Emiliania huxleyi: the (13²R)-enantiomers of chlorophylls-c are exclusively selected as the photosynthetically active pigments in chromophyte algae.

Science.gov (United States)

Mizoguchi, Tadashi; Kimura, Yuki; Yoshitomi, Taichi; Tamiaki, Hitoshi

2011-11-01

Chlorophyll(Chl)-c pigments in algae, diatoms and some prokaryotes are characterized by the fully conjugated porphyrin π-system as well as the acrylate residue at the 17-position. The precise structural characterization of Chl-c(3) from the haptophyte Emiliania huxleyi was performed. The conformations of the π-conjugated peripheral substituents, the 3-/8-vinyl, 7-methoxycarbonyl and 17-acrylate moieties were evaluated, in a solution, using nuclear Overhauser enhancement correlations and molecular modeling calculations. The rotation of the 17-acrylate residue was considerably restricted, whereas the other three substituents readily rotated at ambient temperature. Moreover, the stereochemistry at the 13²-position was determined by combination of chiral high-performance liquid chromatography (HPLC) with circular dichroism (CD) spectroscopy. Compared with the CD spectra of the structurally related, synthetic (13²R)- and (13²S)-protochlorophyllide(PChlide)-a, naturally occurring Chl-c₃ had exclusively the (13²R)-configuration. To elucidate this natural selection of a single enantiomer, we analyzed the three major Chl-c pigments (Chl-c₁, c₂ and c₃) in four phylogenetically distinct classes of Chl-c containing algae, i.e., heterokontophyta, dinophyta, cryptophyta and haptophyta using chiral HPLC. All the photosynthetic organisms contained only the (13²R)-enantiomerically pure Chls-c, and lacked the corresponding enantiomeric (13²S)-forms. Additionally, Chl-c₂ was found in all the organisms as the common Chl-c. These results throw a light on the biosynthesis as well as photosynthetic function of Chl-c pigments: Chl-c₂ is derived from 8-vinyl-PChlide-a by dehydrogenation of the 17-propionate to acrylate residues as generally proposed, and the (13²R)-enantiomers of Chls-c function as photosynthetically active, light-harvesting pigments together with the principal Chl-a and carotenoids. 2011 Elsevier B.V. All rights reserved.

Calcareous nannoplankton dating of the Late Quaternary deposits in Greece and the eastern Mediterranean: Case studies from terrestrial and marine sites

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Maria V. Triantaphyllou

2015-10-01

Full Text Available The distribution and abundance of Emiliania huxleyi (E. huxleyi assemblages in the marine sediments of the Aravonitsa Plateau, Greece, and from the eastern Mediterranean are used (1 to evaluate the calcareous nannoplankton NN21a and NN21b biozones and the NN21a/NN21b boundary, and (2 to analyze the palaeoenvironmental and palaeoclimatic conditions prevailing in this interval. The sediment succession displays varied E. huxleyi assemblages and these are interpreted as reflecting climatic variability during marine isotope stages MIS 1–8.

Ocean Acidification: Coccolithophore's Light Controlled Effect on Alkalinity

Science.gov (United States)

Dobbins, W.

2015-12-01

Coccolithophorids, which play a significant role in the flux of calcite and organic carbon from the photic region to deeper pelagic and benthic zones, are potentially far more useful than siliceous phytoplankton for ocean fertilization projects designed to sequester CO2. However, the production of H+ ions during calcification (HCO3 + Ca+ —> CaCO3 + H+) has resulted in localized acidification around coccolithophore blooms. It has been hypothesized that under the correct light conditions photosynthesis could proceed at a rate such that CO2 is removed in amounts equimolar or greater than the H+ produced by calcification, allowing stable or increasing alkalinity despite ongoing calcification. Previously, this effect had not been demonstrated under laboratory conditions. Fifteen Emiliania huxleyi cultures were separated into equal groups with each receiving: 0, 6, 12, 18, or 24 hours of light each day for 24 days. Daily pH, cell density, and temperature measurements revealed a strong positive correlation between light exposure and pH, and no significant decline in pH in any of the cultures. Alkalinity increases were temperature independent and not strongly correlated with cell density, implying photosynthetic removal of carbon dioxide as the root cause. The average pH across living cultures increased from 7.9 to 8.3 over the first week and changed little for the reminder of the 24-day period. The results demonstrate coccolithophorids can increase alkalinity across a broad range of cell densities, despite the acidification inherent to the calcification process. If the light-alkalinity effect reported here proves scalable to larger cultures, Emiliania huxleyi are a strong candidate for carbon sequestration via targeted ocean fertilization.

Recent reticulate evolution in the ecologically dominant lineage of coccolithophores

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El Mahdi eBendif

2016-05-01

Full Text Available The coccolithophore family Noëlaerhabdaceae contains a number of taxa that are very abundant in modern oceans, including the cosmopolitan bloom-forming Emiliania huxleyi. Introgressive hybridization has been suggested to account for incongruences between nuclear, mitochondrial and plastidial phylogenies of morphospecies within this lineage, but the number of species cultured to date remains rather limited. Here, we present the characterization of 5 new Noëlaerhabdaceae culture strains isolated from samples collected in the south-east Pacific Ocean. These were analyzed morphologically using scanning electron microscopy and phylogenetically by sequencing 5 marker genes (nuclear 18S and 28S rDNA, plastidial tufA, and mitochondrial cox1 and cox3 genes. Morphologically, one of these strains corresponded to Gephyrocapsa ericsonii and the four others to Reticulofenestra parvula. Ribosomal gene sequences were near identical between these new strains, but divergent from G. oceanica, G. muellerae and E. huxleyi. In contrast to the clear distinction in ribosomal phylogenies, sequences from other genomic compartments clustered with those of E. huxleyi strains with which they share an ecological range (i.e. warm temperate to tropical waters. These data provide strong support for the hypothesis of past (and potentially ongoing introgressive hybridization within this ecologically important lineage and for the transfer of R. parvula to Gephyrocapsa. These results have important implications for understanding the role of hybridization in speciation in vast ocean meta-populations of phytoplankton.

Intraspecific Differences in Biogeochemical Responses to Thermal Change in the Coccolithophore Emiliania huxleyi.

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Paul G Matson

Full Text Available The species concept in marine phytoplankton is defined based on genomic, morphological, and functional properties. Reports of intraspecific diversity are widespread across major phytoplankton groups but the impacts of this variation on ecological and biogeochemical processes are often overlooked. Intraspecific diversity is well known within coccolithophores, which play an important role in the marine carbon cycle via production of particulate inorganic carbon. In this study, we investigated strain-specific responses to temperature in terms of morphology, carbon production, and carbonate mineralogy using a combination of microscopy, elemental analysis, flow cytometry, and nuclear magnetic resonance. Two strains of the cosmopolitan coccolithophore E. huxleyi isolated from different regions (subtropical, CCMP371; temperate, CCMP3266 were cultured under a range of temperature conditions (10°C, 15°C, and 20°C using batch cultures and sampled during both exponential and stationary growth. Results for both strains showed that growth rates decreased at lower temperatures while coccosphere size increased. Between 15°C and 20°C, both strains produced similar amounts of total carbon, but differed in allocation of that carbon between particulate inorganic carbon (PIC and particulate organic carbon (POC, though temperature effects were not detected. Between 10°C and 20°C, temperature effects on daily production of PIC and POC, as well as the cellular quota of POC were detected in CCMP3266. Strain-specific differences in coccolith shedding rates were found during exponential growth. In addition, daily shedding rates were negatively related to temperature in CCMP371 but not in CCMP3266. Despite differences in rates of particulate inorganic carbon production, both strains were found to produce coccoliths composed entirely of pure calcite, as established by solid-state 13C and 43Ca NMR and X-ray diffraction measurements. These results highlight the

Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship.

Science.gov (United States)

Johannessen, Torill Vik; Larsen, Aud; Bratbak, Gunnar; Pagarete, António; Edvardsen, Bente; Egge, Elianne D; Sandaa, Ruth-Anne

2017-04-20

Viruses influence the ecology and diversity of phytoplankton in the ocean. Most studies of phytoplankton host-virus interactions have focused on bloom-forming species like Emiliania huxleyi or Phaeocystis spp. The role of viruses infecting phytoplankton that do not form conspicuous blooms have received less attention. Here we explore the dynamics of phytoplankton and algal viruses over several sequential seasons, with a focus on the ubiquitous and diverse phytoplankton division Haptophyta, and their double-stranded DNA viruses, potentially with the capacity to infect the haptophytes. Viral and phytoplankton abundance and diversity showed recurrent seasonal changes, mainly explained by hydrographic conditions. By 454 tag-sequencing we revealed 93 unique haptophyte operational taxonomic units (OTUs), with seasonal changes in abundance. Sixty-one unique viral OTUs, representing Megaviridae and Phycodnaviridae , showed only distant relationship with currently isolated algal viruses. Haptophyte and virus community composition and diversity varied substantially throughout the year, but in an uncoordinated manner. A minority of the viral OTUs were highly abundant at specific time-points, indicating a boom-bust relationship with their host. Most of the viral OTUs were very persistent, which may represent viruses that coexist with their hosts, or able to exploit several host species.

A Taste of Algal Genomes from the Joint Genome Institute

Energy Technology Data Exchange (ETDEWEB)

Kuo, Alan; Grigoriev, Igor

2012-06-17

Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

Phytoplankton composition and biomass across the southern Indian Ocean

DEFF Research Database (Denmark)

Schlüter, Louise; Henriksen, Peter; Nielsen, Torkel Gissel

2011-01-01

prochlorophytes dominated at these two stations, but also pelagophytes, haptophytes and cyanobacteria were abundant. Haptophytes Type 6 (sensu Zapata et al., 2004), most likely Emiliania huxleyi, and pelagophytes were the dominating eucaryotes in the southern Indian Ocean. Prochlorophytes dominated...

Response to Comment on "Phytoplankton Calcification in a High-CO2 World"

NARCIS (Netherlands)

Iglesias-Rodriguez, M. Debora; Buitenhuis, Erik T.; Raven, John A.; Schofield, Oscar; Poulton, Alex J.; Gibbs, Samantha; Halloran, Paul R.; de Baar, Hein J. W.

2008-01-01

Recently reported increasing calcification rates and primary productivity in the coccolithophore Emiliania huxleyi were obtained by equilibrating seawater with mixtures of carbon dioxide in air. The noted discrepancy with previously reported decreasing calcification is likely due to the previously

Variable production of transparent exopolymeric particles by haploid and diploid life stages of coccolithophores grown under different CO2 concentrations

NARCIS (Netherlands)

Pedrotti, M.L.; Fiorini, S.; Kerros, M.E.; Middelburg, J.J.; Gattuso, J.P.

2012-01-01

The production of transparent exopolymeric particles (TEP) by the coccolithophores, Emiliania huxleyi, Calcidiscus leptoporus and Syracosphaera pulchra was investigated in batch cultures. The abundance, size spectra and carbon content of TEP were examined during the exponential growth phase of both

Salinity dependent hydrogen isotope fractionation in alkenones produced by coastal and open ocean haptophyte algae

NARCIS (Netherlands)

M'boule, D.; Chivall, D.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J.

2014-01-01

The hydrogen isotope fractionation in alkenones produced by haptophyte algae is a promising new proxy for paleosalinity reconstructions. To constrain and further develop this proxy the coastal haptophyte Isochrysis galbana and the open ocean haptophyte alga Emiliania huxleyi were cultured at

Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea

NARCIS (Netherlands)

Coolen, M.J.L.; Boere, A.; Abbas, M.; Wakeham, S.G.; Sinninghe Damsté, J.S.

2006-01-01

Holocene sea surface temperatures (SST) of the Black Sea have been reconstructed using sedimentary C37 unsaturated alkenones assumed to be derived from the coccolithophorid haptophyte Emiliania huxleyi, whose fossil coccoliths are an important constituent of the unit I sediments. However,

Dynamics regulating major trends in Barents Sea temperatures and subsequent effect on remotely sensed particulate inorganic carbon

DEFF Research Database (Denmark)

Hovland, Erlend Kjeldsberg; Dierssen, Heidi M.; Ferreira, Ana Sofia

2013-01-01

A more comprehensive understanding of how ocean temperatures influence coccolithophorid production of particulate inorganic carbon (PIC) will make it easier to constrain the effect of ocean acidification in the future. We studied the effect of temperature on Emiliania huxleyi PIC production...

Emiliania huxleyi v1.0

Energy Technology Data Exchange (ETDEWEB)

Kuo, Alan

2008-10-01

We discuss how to find tandem duplicates and look at: (1) self aligning, proteomes - [Blastp]; (2) convert into symmetric similarity matrix; (3) cluster into familites - [MCL]; (4) annotate families with Pfam - [Hmmer]; and (5) classify families by taxa; and (6) look for interesting stuff.

Phylogenetic distribution of roseobacticides in the Roseobacter group and their effect on microalgae

DEFF Research Database (Denmark)

Sonnenschein, Eva C.; Phippen, Christopher Broughton William; Bentzon-Tilia, Mikkel

2018-01-01

not produce roseobacticides, possibly due to a transposable element. TDA-producing Ruegeria and Pseudovibrio did not produce roseobacticides. Addition of roseobacticide-containing bacterial extracts affected the growth of the microalgae Rhodomonas salina, Thalassiosira pseudonana and Emiliania huxleyi, while...... growth of Tetraselmis suecica was unaffected. During co-cultivation, growth of E. huxleyi was initially stimulated by the roseobacticide producer DSM 17395, while the subsequent decline in algal cell numbers during senescence was enhanced. Strain 27-4 that does not produce roseobacticides had no effect...

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton.

Science.gov (United States)

von Dassow, Peter; John, Uwe; Ogata, Hiroyuki; Probert, Ian; Bendif, El Mahdi; Kegel, Jessica U; Audic, Stéphane; Wincker, Patrick; Da Silva, Corinne; Claverie, Jean-Michel; Doney, Scott; Glover, David M; Flores, Daniella Mella; Herrera, Yeritza; Lescot, Magali; Garet-Delmas, Marie-José; de Vargas, Colomban

2015-06-01

Emiliania huxleyi is the most abundant calcifying plankton in modern oceans with substantial intraspecific genome variability and a biphasic life cycle involving sexual alternation between calcified 2N and flagellated 1N cells. We show that high genome content variability in Emiliania relates to erosion of 1N-specific genes and loss of the ability to form flagellated cells. Analysis of 185 E. huxleyi strains isolated from world oceans suggests that loss of flagella occurred independently in lineages inhabiting oligotrophic open oceans over short evolutionary timescales. This environmentally linked physiogenomic change suggests life cycling is not advantageous in very large/diluted populations experiencing low biotic pressure and low ecological variability. Gene loss did not appear to reflect pressure for genome streamlining in oligotrophic oceans as previously observed in picoplankton. Life-cycle modifications might be common in plankton and cause major functional variability to be hidden from traditional taxonomic or molecular markers.

Reticulofenestra calicis n. sp., an unusual small reticulofenestrid coccolith from the lower pliocene of the South Caribbean Sea

DEFF Research Database (Denmark)

Crudeli, D.; Kinkel, Hanno

2004-01-01

occasionally has few slits between the distal shield elements. Attribution to the genera Reticulofenestra instead of Pseudoemiliania is discussed in detail. R. calicis n. sp. is structurally similar to the modern Emiliania huxleyi var. corona and to Reticulofenestra maceria. R. calicis n. sp., readily...

Coccolithophores in the equatorial Atlantic Ocean

DEFF Research Database (Denmark)

Kinkel, Hanno; Baumann, K.-H.; Cepek, M.

2000-01-01

with each other. In general, the living coccolithophores in the surface and subsurface waters show considerable variation in cell numbers and distribution patterns. Cell densities reached a maximum of up to 300 x 10 coccospheres/l in the upwelling area of the equatorial Atlantic. Here, Emiliania huxleyi...

Coccolith distribution patterns in South Atlantic and Southern Ocean surface sediments in relation to environmental gradients

DEFF Research Database (Denmark)

Boeckel, B.; Baumann, K.-H.; Henrich, R.

2006-01-01

affinities were ascertained. In general, Emiliania huxleyi is the most abundant species of the recent coccolith assemblages in the study region. However, the lower photic zone taxa, composed of Florisphaera profunda and Gladiolithus flabellatus often dominate the assemblages between 20°N and 30°S. If E....... huxleyi is excluded, Calcidiscus leptoporus and F. profunda become the most abundant species, each dominating discrete oceanographic regimes. While F. profunda is very abundant in the sediments underneath warmer, stratified surface waters with a deep nutricline, Calcidiscus leptoporus is encountered...

Testing the effects of elevated pCO2 on coccolithophores (Prymnesiophysceae): comparison between haploid and diploid life stages

NARCIS (Netherlands)

Fiorini, S.; Middelburg, J.J.; Gattuso, J.P.

2011-01-01

The response of Emiliania huxleyi (Lohmann) W. W. Hay et H. Mohler, Calcidiscus leptoporus (G. Murray et V. H. Blackman) J. Schiller, and Syracosphaera pulchra Lohmann to elevated partial pressure of carbon dioxide (pCO2) was investigated in batch cultures. We reported on the response of both

Coccolithophores: Functional Biodiversity, Enzymes and Bioprospecting

Directory of Open Access Journals (Sweden)

Michael J. Allen

2011-04-01

Full Text Available Emiliania huxleyi is a single celled, marine phytoplankton with global distribution. As a key species for global biogeochemical cycling, a variety of strains have been amassed in various culture collections. Using a library consisting of 52 strains of E. huxleyi and an ‘in house‘ enzyme screening program, we have assessed the functional biodiversity within this species of fundamental importance to global biogeochemical cycling, whilst at the same time determining their potential for exploitation in biocatalytic applications. Here, we describe the screening of E. huxleyi strains, as well as a coccolithovirus infected strain, for commercially relevant biocatalytic enzymes such as acid/alkali phosphodiesterase, acid/alkali phosphomonoesterase, EC1.1.1-type dehydrogenase, EC1.3.1-type dehydrogenase and carboxylesterase.

Direct measurements of the light dependence of gross photosynthesis and oxygen consumption in the ocean

Science.gov (United States)

Bailleul, B.; Park, J.; Brown, C. M.; Bidle, K. D.; Lee, S.; Falkowski, P. G.

2016-02-01

For decades, a lack of understanding of how respiration is influenced by light has been stymying our ability to quantitatively analyze how phytoplankton allocate carbon in situ and the biological mechanisms that participate to the fate of blooms. Using membrane inlet mass spectrometry (MIMS), the light dependencies of gross photosynthesis and oxygen uptake rates were measured during the bloom demises of two prymnesiophytes, in two open ocean regions. In the North Atlantic, dominated by Emiliania huxleyi, respiration was independent of irradiance and was higher than the gross photosynthetic rate at all irradiances. In the Amundsen Sea (Antarctica), dominated by Phaeocystis antarctica, the situation was very different. Dark respiration was one order of magnitude lower than the maximal gross photosynthetic rate. ut the oxygen uptake rate increased by 10 fold at surface irradiances, where it becomes higher than gross photosynthesis. Our results suggest that the light dependence of oxygen uptake in P. antarctica has two sources: one is independent of photosynthesis, and is possibly associated with the photo-reduction of O2 mediated by dissolved organic matter; the second reflects the activity of an oxidase fueled in the light with photosynthetic electron flow. Interestingly, these dramatic light-dependent changes in oxygen uptake were not reproduced in nutrient-replete P. antarctica cultures, in the laboratory. Our measurements highlight the importance of improving our understanding of oxygen consuming reactions in the euphotic zone, which is critical to investigating the physiology of phytoplankton and tracing the fate of phytoplankton blooms.

Biomineralization

DEFF Research Database (Denmark)

Sand, K. K.; Pedersen, C. S.; Sjöberg, S.

2014-01-01

a modern coccolithophorid, Emiliania huxleyi. We generated surface complexation constants for the branch components: malonate: 14.25 ± 0.17, succinate: 11.91 ± 0.06, tricarballylate: 14.86 ± 0.04, and citrate: 15.25 ± 0.04. The implication is that complex PS could hold promise for smart material...

The influence of environmental variability on the biogeography of coccolithophores and diatoms in the Great Calcite Belt

Science.gov (United States)

Smith, Helen E. K.; Poulton, Alex J.; Garley, Rebecca; Hopkins, Jason; Lubelczyk, Laura C.; Drapeau, Dave T.; Rauschenberg, Sara; Twining, Ben S.; Bates, Nicholas R.; Balch, William M.

2017-11-01

The Great Calcite Belt (GCB) of the Southern Ocean is a region of elevated summertime upper ocean calcite concentration derived from coccolithophores, despite the region being known for its diatom predominance. The overlap of two major phytoplankton groups, coccolithophores and diatoms, in the dynamic frontal systems characteristic of this region provides an ideal setting to study environmental influences on the distribution of different species within these taxonomic groups. Samples for phytoplankton enumeration were collected from the upper mixed layer (30 m) during two cruises, the first to the South Atlantic sector (January-February 2011; 60° W-15° E and 36-60° S) and the second in the South Indian sector (February-March 2012; 40-120° E and 36-60° S). The species composition of coccolithophores and diatoms was examined using scanning electron microscopy at 27 stations across the Subtropical, Polar, and Subantarctic fronts. The influence of environmental parameters, such as sea surface temperature (SST), salinity, carbonate chemistry (pH, partial pressure of CO2 (pCO2), alkalinity, dissolved inorganic carbon), macronutrients (nitrate + nitrite, phosphate, silicic acid, ammonia), and mixed layer average irradiance, on species composition across the GCB was assessed statistically. Nanophytoplankton (cells 2-20 µm) were the numerically abundant size group of biomineralizing phytoplankton across the GCB, with the coccolithophore Emiliania huxleyi and diatoms Fragilariopsis nana, F. pseudonana, and Pseudo-nitzschia spp. as the most numerically dominant and widely distributed. A combination of SST, macronutrient concentrations, and pCO2 provided the best statistical descriptors of the biogeographic variability in biomineralizing species composition between stations. Emiliania huxleyi occurred in silicic acid-depleted waters between the Subantarctic Front and the Polar Front, a favorable environment for this species after spring diatom blooms remove silicic acid

The Labrador Sea during the Last Glacial Maximum: Calcite dissolution or low biogenic carbonate fluxes?

Science.gov (United States)

Marshall, Nicole; de Vernal, Anne; Mucci, Alfonso; Filippova, Alexandra; Kienast, Markus

2017-04-01

Low concentrations of biogenic carbonate characterize the sediments deposited in the Labrador Sea during the last glaciation. This may reflect poor calcite preservation and/or low biogenic carbonate productivity and fluxes. Regional bottom water ventilation was reduced during the Last Glacial Maximum (LGM), so the calcite lysocline might have been shallower than at present in the deep Labrador Sea making dissolution of calcite shells in the deep Labrador Sea possible. To address the issue, a multi-proxy approach based on micropaleontological counts (coccoliths, foraminifers, palynomorphs) and biogeochemical analyses (alkenones) was applied in the investigation of core HU2008-029-004-PC recovered in the northwestern Labrador Sea. Calcite dissolution indices based on the relative abundance benthic foraminifera shells to their organic linings as well as on fragmentation of planktonic foraminifera shells were used to evaluate changes in calcite dissolution/ preservation since the LGM. In addition, the ratio of the concentrations of coccoliths, specifically of the alkenone-producer Emiliania huxleyi, and alkenones (Emiliania huxleyi: alkenones) was explored as a potential new proxy of calcite dissolution. A sharp increase in coccoliths, foraminifers and organic linings from nearly none to substantial concentrations at 12 ka, reflect a jump to significantly greater biogenic fluxes at the glacial-interglacial transition. Furthermore, conventional dissolution indices (shells/linings of benthic foraminifera and fragmentation of planktic foraminifers) reveal that dissolution is not likely responsible for the lower glacial abundances of coccoliths and foraminifers. Only the low Emiliania huxleyi: alkenones ratios in glacial sediments could be interpreted as evidence of increased dissolution during the LGM. Given the evidence of allochthonous alkenone input into the glacial Labrador Sea, the latter observations must be treated with caution. Overall, the records indicate that

Response of marine viral populations to a nutrient induced phytoplankton bloom at different pCO2 levels

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R.-A. Sandaa

2008-04-01

Full Text Available During the PeECE III mesocosm experiment in 2005 we investigated how the virioplankton community responded to increased levels of nutrients (N and P and CO2. We applied a combination of flow cytometry, Pulsed Field Gel Electrophoresis and degenerate PCR primers to categorize and quantify individual viral populations, and to investigate their temporal dynamics. Species specific and degenerate primers enabled us to identify two specific large dsDNA viruses, EhV and CeV, infecting the haptophytes Emiliania huxleyi and Crysochromulina ericina, respectively. Some of the viral populations detected and enumerated by flow cytometry did not respond to altered CO2-levels, but the abundance of EhV and an unidentified dsDNA virus decreased with increasing CO2 levels. Our results thus indicate that CO2 conditions, or the related change in pH, may affect the marine pelagic food web at the viral level. Our results also demonstrate that in order to unravel ecological problems as how CO2 and nutrient levels affect the relationship between marine algal viruses and their hosts, we need to continue the effort to develop molecular markers used to identify both hosts and viruses.

Bioaccumulation and toxicity of selenium compounds in the green alga Scenedesmus quadricauda

Czech Academy of Sciences Publication Activity Database

Umysová, Dáša; Vítová, Milada; Doušková, Irena; Bišová, Kateřina; Hlavová, Monika; Čížková, Mária; Machat, J.; Doucha, Jiří; Zachleder, Vilém

2009-01-01

Roč. 9, č. 58 (2009), s. 1-16 ISSN 1471-2229 R&D Projects: GA AV ČR IAA600200701; GA MŠk OE 221; GA MŠk OE09025 Institutional research plan: CEZ:AV0Z50200510 Keywords : CHLAMYDOMONAS-REINHARDTII * THIOREDOXIN REDUCTASE * EMILIANIA-HUXLEYI Subject RIV: EE - Microbiology, Virology Impact factor: 3.774, year: 2009

Earth 2075 (CO2) - can Ocean-Amplified Carbon Capture (oacc) Impart Atmospheric CO2-SINKING Ability to CCS Fossil Energy?

Science.gov (United States)

Fry, R.; Routh, M.; Chaudhuri, S.; Fry, S.; Ison, M.; Hughes, S.; Komor, C.; Klabunde, K.; Sethi, V.; Collins, D.; Polkinghorn, W.; Wroobel, B.; Hughes, J.; Gower, G.; Shkolnik, J.

2017-12-01

Previous attempts to capture atmospheric CO2 by algal blooming were stalled by ocean viruses, zooplankton feeding, and/or bacterial decomposition of surface blooms, re-releasing captured CO2 instead of exporting it to seafloor. CCS fossil energy coupling could bypass algal bloom limits—enabling capture of 10 GtC/yr atmospheric CO2 by selective emiliania huxleyi (EHUX) blooming in mid-latitude open oceans, far from coastal waters and polar seas. This could enable a 500 GtC drawdown, 350 ppm restoration by 2050, 280 ppm CO2 by 2075, and ocean pH 8.2. White EHUX blooms could also reflect sunlight back into outer space and seed extra ocean cloud cover, via DMS release, to raise albedo 1.8%—restoring preindustrial temperature (ΔT = 0°C) by 2030. Open oceans would avoid post-bloom anoxia, exclusively a coastal water phenomenon. The EHUX calcification reaction initially sources CO2, but net sinking prevails in follow-up equilibration reactions. Heavier-than-water EHUX sink captured CO2 to the sea floor before surface decomposition occurs. Seeding EHUX high on their nonlinear growth curve could accelerate short-cycle secondary open-ocean blooming—overwhelming mid-latitude viruses, zooplankton, and competition from other algae. Mid-latitude "ocean deserts" exhibit low viral, zooplankton, and bacterial counts. Thermocline prevents nutrient upwelling that would otherwise promote competing algae. Adding nitrogen nutrient would foster exclusive EHUX blooming. Elevated EHUX seed levels could arise from sealed, pH-buffered, floating, seed-production bioreactors infused with 10% CO2 from carbon feedstock supplied by inland CCS fossil power plants capturing 90% of emissions as liquid CO2. Deep-water SPAR platforms extract natural gas from beneath the sea floor. On-platform Haber and pH processing could convert extracted CH4 to buffered NH4+ nutrient, enabling ≥0.7 GtC/yr of bioreactor seed production and 10 GtC/yr of amplified secondary open-ocean CO2 capture—making CCS

Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition in Emiliania huxleyi.

Science.gov (United States)

Feldmesser, Ester; Rosenwasser, Shilo; Vardi, Assaf; Ben-Dor, Shifra

2014-02-22

The advent of Next Generation Sequencing technologies and corresponding bioinformatics tools allows the definition of transcriptomes in non-model organisms. Non-model organisms are of great ecological and biotechnological significance, and consequently the understanding of their unique metabolic pathways is essential. Several methods that integrate de novo assembly with genome-based assembly have been proposed. Yet, there are many open challenges in defining genes, particularly where genomes are not available or incomplete. Despite the large numbers of transcriptome assemblies that have been performed, quality control of the transcript building process, particularly on the protein level, is rarely performed if ever. To test and improve the quality of the automated transcriptome reconstruction, we used manually defined and curated genes, several of them experimentally validated. Several approaches to transcript construction were utilized, based on the available data: a draft genome, high quality RNAseq reads, and ESTs. In order to maximize the contribution of the various data, we integrated methods including de novo and genome based assembly, as well as EST clustering. After each step a set of manually curated genes was used for quality assessment of the transcripts. The interplay between the automated pipeline and the quality control indicated which additional processes were required to improve the transcriptome reconstruction. We discovered that E. huxleyi has a very high percentage of non-canonical splice junctions, and relatively high rates of intron retention, which caused unique issues with the currently available tools. While individual tools missed genes and artificially joined overlapping transcripts, combining the results of several tools improved the completeness and quality considerably. The final collection, created from the integration of several quality control and improvement rounds, was compared to the manually defined set both on the DNA and

Bacterial Influence on Alkenones in Live Microalgae1

Science.gov (United States)

Segev, Einat; Castañeda, Isla S.; Sikes, Elisabeth L.; Vlamakis, Hera; Kolter, Roberto

2015-01-01

The microalga Emiliania huxleyi produces alkenone lipids which are important proxies for estimating past sea surface temperatures. Field calibrations of this proxy are robust but highly variable results are obtained in culture. Here we present results suggesting that algal-bacterial interactions may be responsible for some of this variability. Co-cultures of E. huxleyi and the bacterium Phaeobacter inhibens resulted in a 2.5-fold decrease in algal alkenone-containing lipid bodies. In addition levels of unsaturated alkenones increase in co-cultures. These changes result in an increase in the reconstructed growth temperature of up to 2°C relative to axenic algal cultures. PMID:26987094

Bacterial influence on alkenones in live microalgae.

Science.gov (United States)

Segev, Einat; Castañeda, Isla S; Sikes, Elisabeth L; Vlamakis, Hera; Kolter, Roberto

2016-02-01

The microalga Emiliania huxleyi produces alkenone lipids that are important proxies for estimating past sea surface temperatures. Field calibrations of this proxy are robust but highly variable results are obtained in culture. Here, we present results suggesting that algal-bacterial interactions may be responsible for some of this variability. Co-cultures of E. huxleyi and the bacterium Phaeobacter inhibens resulted in a 2.5-fold decrease in algal alkenone-containing lipid bodies. In addition levels of unsaturated alkenones increase in co-cultures. These changes result in an increase in the reconstructed growth temperature of up to 2°C relative to axenic algal cultures. © 2015 Phycological Society of America.

Effects of long-term high CO2 exposure on two species of coccolithophores

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K. G. Schulz

2010-03-01

Full Text Available The physiological performance of two coccolithophore species, Emiliania huxleyi and Coccolithus braarudii, was investigated during long-term exposure to elevated pCO2 levels. Mono-specific cultures were grown over 152 (E. huxleyi and 65 (C. braarudii generations while pCO2 was gradually increased to maximum levels of 1150 μatm (E. huxleyi and 930 μatm (C. braarudii and kept constant thereafter. Rates of cell growth and cell quotas of particulate organic carbon (POC, particulate inorganic carbon (PIC and total particulate nitrogen (TPN were determined repeatedly throughout the incubation period. Increasing pCO2 caused a decrease in cell growth rate of 9% and 29% in E. huxleyi and C. braarudii, respectively. In both species cellular PIC:TPN and PIC:POC ratios decreased in response to rising pCO2, whereas no change was observed in the POC:TPN ratios of E. huxleyi and C. braarudii. These results are consistent with those obtained in shorter-term high CO2 exposure experiments following abrupt pertubations of the seawater carbonate system and indicate that for the strains tested here a gradual CO2 increase does not alleviate CO2/pH sensitivity.

Isolation of Methylophaga spp. from Marine Dimethylsulfide-Degrading Enrichment Cultures and Identification of Polypeptides Induced during Growth on Dimethylsulfide▿

OpenAIRE

Schäfer, Hendrik

2007-01-01

Dimethylsulfide (DMS)-degrading enrichment cultures were established from samples of coastal seawater, nonaxenic Emiliania huxleyi cultures, and mixed marine methyl halide-degrading enrichment cultures. Bacterial populations from a broad phylogenetic range were identified in the mixed DMS-degrading enrichment cultures by denaturing gradient gel electrophoresis (DGGE). Sequences of dominant DGGE bands were similar to those of members of the genera Methylophaga and Alcanivorax. Several closely ...

Dinoflagellate blooms in upwelling systems: Seeding, variability, and contrasts with diatom bloom behaviour

Science.gov (United States)

Smayda, T. J.; Trainer, V. L.

2010-04-01

The influence of diatom bloom behaviour, dinoflagellate life cycles, propagule type and upwelling bloom cycles on the seeding of dinoflagellate blooms in eastern boundary current upwelling systems is evaluated. Winter-spring diatom bloom behaviour is contrasted with upwelling bloom behaviour because their phenology impacts dinoflagellate blooms. The winter-spring diatom bloom is usually sustained, whereas the classical upwelling diatom bloom occurs as a series of separate, recurrent mini-blooms intercalated by upwelling-relaxation periods, during which dinoflagellates often bloom. Four sequential wind-regulated phases characterize upwelling cycles, with each phase having different effects on diatom and dinoflagellate bloom behaviour: bloom “spin up”, bloom maximum, bloom “spin down”, and upwelling relaxation. The spin up - bloom maximum is the period of heightened diatom growth; the spin down - upwelling-relaxation phases are the periods when dinoflagellates often bloom. The duration, intensity and ratio of the upwelling and relaxation periods making up upwelling cycles determine the potential for dinoflagellate blooms to develop within a given upwelling cycle and prior to the subsequent “spin up” of upwelling that favours diatom blooms. Upwelling diatoms and meroplanktonic dinoflagellates have three types of propagules available to seed blooms: vegetative cells, resting cells and resting cysts. However, most upwelling dinoflagellates are holoplanktonic, which indicates that the capacity to form resting cysts is not an absolute requirement for growth and survival in upwelling systems. The long-term (decadal) gaps in bloom behaviour of Gymnodinium catenatum and Lingulodinium polyedrum, and the unpredictable bloom behaviour of dinoflagellates generally, are examined from the perspective of seeding strategies. Mismatches between observed and expected in situ bloom behaviour and resting cyst dynamics are common among upwelling dinoflagellates. This

Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery

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Jozef I. Nissimov

2017-03-01

Full Text Available Coccolithoviruses (Phycodnaviridae infect and lyse the most ubiquitous and successful coccolithophorid in modern oceans, Emiliania huxleyi. So far, the genomes of 13 of these giant lytic viruses (i.e., Emiliania huxleyi viruses—EhVs have been sequenced, assembled, and annotated. Here, we performed an in-depth comparison of their genomes to try and contextualize the ecological and evolutionary traits of these viruses. The genomes of these EhVs have from 444 to 548 coding sequences (CDSs. Presence/absence analysis of CDSs identified putative genes with particular ecological significance, namely sialidase, phosphate permease, and sphingolipid biosynthesis. The viruses clustered into distinct clades, based on their DNA polymerase gene as well as full genome comparisons. We discuss the use of such clustering and suggest that a gene-by-gene investigation approach may be more useful when the goal is to reveal differences related to functionally important genes. A multi domain “Best BLAST hit” analysis revealed that 84% of the EhV genes have closer similarities to the domain Eukarya. However, 16% of the EhV CDSs were very similar to bacterial genes, contributing to the idea that a significant portion of the gene flow in the planktonic world inter-crosses the domains of life.

Late winter coccolithophore bloom off central Portugal in response to river discharge and upwelling

Science.gov (United States)

Guerreiro, Catarina; Oliveira, Anabela; de Stigter, Henko; Cachão, Mário; Sá, Carolina; Borges, Carlos; Cros, Lluϊsa; Santos, Ana; Fortuño, José-Manuel; Rodrigues, Aurora

2013-05-01

Coccolithophore communities collected during late winter (9-19 March of 2010) over the central Portuguese margin showed a major change in species abundance and composition within a few days' time, closely related to the highly transient meteorological and oceanographic conditions. Particularly favourable conditions for coccolithophore growth resulted from late winter continental runoff combined with northerly winds prevailing over the shelf, under clear sky conditions. A nutrient-rich Buoyant Plume (BP) resulting from intense river water runoff prior to and during the start of the cruise, was observed to spread out over the denser winter mixed layer water beneath, and extend equatorwards and offshore under influence of Ekman superficial dynamics. Stabilization of buoyancy, settling of suspended sediment from the BP and the prevailing clear sky conditions in the transition to the 2nd leg of the cruise resulted in optimum conditions for coccolithophores to develop, at the expense of nutrient availability in the superficial sunlit layer. Within a few days, coccolithophore cell densities and associated phytoplankton biomass more than tripled, reaching maximum values of 145,000 cells/l and ~13 µg/l Chl-a, respectively. Often considered as a uniform functional group of calcifying phytoplankton thriving in low-turbulence, low-nutrients and high-light environments, results presented in this study clearly show that coccolithophore life strategies are much more diverse than expected. The increase of cell densities was mainly due to the bloom of Emiliania huxleyi and Gephyrocapsa oceanica in the coastal region west off Cape Carvoeiro, together with other opportunistic phytoplankton genera (Chaetoceros s.l., Thalassiosira s.l and Skeletonema s.l.). This confirms their role as early succession r-selected taxa, capable of rapid growth within nutrient-rich environments. On the contrary, Syracosphaera spp. and Ophiaster spp. displayed the characteristics of K-selected species

Bacterial Infochemicals are Drivers of Algal Lysis

Science.gov (United States)

Whalen, K.; Deering, R.; Rowley, D. C.; El Gamal, A.; Schorn, M.; Moore, B. S.; Johnson, M. D.; Mincer, T. J.; Harvey, E.

2016-02-01

Processing of organic matter by bacteria forces oceanic biogeochemical cycles, food web structure and ultimately environmental stoichiometry. A newly emerging picture of the microbial loop suggests that bacteria are not merely passive recipients of dissolved organic matter (DOM) from phytoplankton exudate. Rather, heterotrophic bacteria can mediate the flow of DOM by actively producing soluble algicidal compounds. However, deciphering those chemical signals that determine these interactions has remained a challenge. Here, we report the isolation of 2-heptyl-4-quinolone (HHQ), released by Pseudoalteromonas piscicida, a marine gamma-proteobacteria isolated from plastic debris in the North Atlantic. Both 2-heptyl-3-hydroxy-4-quinolone and its immediate precursor, HHQ are known to function as antibiotics and quorum sensing signaling molecules with crucial roles in virulence, and apoptosis in eukaryotic cells (e.g. fungi and mammalian cells). Our ecologically-relevant screening of live cells and filtrate from P. piscicida cultures caused a significant decrease in the growth rate of the bloom-forming coccolithophore, Emiliania huxleyi. Bioassay-guided fraction of P. piscicida extracellular crude extracts identified HHQ, which induced mortality in three strains of E. huxleyi with an IC50 in the nanomolar range. In contrast, the marine chlorophyte, Dunaliella tertiolecta and diatom, Phaeodactylum tricornutum were unaffected by HHQ exposures (IC50 > 10 micromolar), but were susceptible to extracts of P. piscicida, indicating this bacterium may produce a cocktail of algicidal compounds specific to different phytoplankton guilds. The ability of HHQ to influence phytoplankton growth suggests that alkylquinolone-signaling molecules play a fundamental role in interkingdom interactions, ultimately influencing shifts in phytoplankton population dynamics. This study implicates a new role for HHQ beyond its importance in quorum sensing.

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics

Science.gov (United States)

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-01

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi. PMID:24463735

Bioaccumulation of Cs-137 and Co-57 by marine phytoplankton

International Nuclear Information System (INIS)

Heldal, H.E.; Stupakoff, I.; Fisher, N.S.

1999-01-01

Under controlled laboratory conditions we have examined the bioaccumulation of Cs-137 and Co-57 in three prymnesiophytes, the coccolithophorid Emiliania huxleyi and the non-calcareous species Isochrysis galbana and Phaeocystis globosa, and two diatoms Skeletonema costatum and Thalassiosira pseudonana. We measured uptake in growing and non-growing cells, and determined concentration factors on both volume and dry weight basis. For Co-57 uptake in non-growing cells, volume concentration factors (VCF) at equilibrium ranged from 0.2 * 10 3 for Emiliana huxleyi to 4 * 10 3 for the diatom Thalassiosira pseudonana. For Cs-137 uptake in non-growing cells the VCFs were close to zero. The results suggest that, in contrast to Co, the cycling and bioaccumulation in animals of Cs in marine systems is unlikely to be affected by primary producers. (au)

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Science.gov (United States)

Santini, Sebastien; Jeudy, Sandra; Bartoli, Julia; Poirot, Olivier; Lescot, Magali; Abergel, Chantal; Barbe, Valérie; Wommack, K. Eric; Noordeloos, Anna A. M.; Brussaard, Corina P. D.; Claverie, Jean-Michel

2013-01-01

Large dsDNA viruses are involved in the population control of many globally distributed species of eukaryotic phytoplankton and have a prominent role in bloom termination. The genus Phaeocystis (Haptophyta, Prymnesiophyceae) includes several high-biomass-forming phytoplankton species, such as Phaeocystis globosa, the blooms of which occur mostly in the coastal zone of the North Atlantic and the North Sea. Here, we report the 459,984-bp-long genome sequence of P. globosa virus strain PgV-16T, encoding 434 proteins and eight tRNAs and, thus, the largest fully sequenced genome to date among viruses infecting algae. Surprisingly, PgV-16T exhibits no phylogenetic affinity with other viruses infecting microalgae (e.g., phycodnaviruses), including those infecting Emiliania huxleyi, another ubiquitous bloom-forming haptophyte. Rather, PgV-16T belongs to an emerging clade (the Megaviridae) clustering the viruses endowed with the largest known genomes, including Megavirus, Mimivirus (both infecting acanthamoeba), and a virus infecting the marine microflagellate grazer Cafeteria roenbergensis. Seventy-five percent of the best matches of PgV-16T–predicted proteins correspond to two viruses [Organic Lake phycodnavirus (OLPV)1 and OLPV2] from a hypersaline lake in Antarctica (Organic Lake), the hosts of which are unknown. As for OLPVs and other Megaviridae, the PgV-16T sequence data revealed the presence of a virophage-like genome. However, no virophage particle was detected in infected P. globosa cultures. The presence of many genes found only in Megaviridae in its genome and the presence of an associated virophage strongly suggest that PgV-16T shares a common ancestry with the largest known dsDNA viruses, the host range of which already encompasses the earliest diverging branches of domain Eukarya. PMID:23754393

Growth phase dependent hydrogen isotopic fractionation in alkenone-producing haptophytes

Directory of Open Access Journals (Sweden)

M. D. Wolhowe

2009-08-01

Full Text Available Recent works have investigated use of the hydrogen isotopic composition of C₃₇ alkenones (δD_K37s, lipid biomarkers of certain haptophyte microalgae, as an independent paleosalinity proxy. We discuss herein the factors impeding the success of such an application and identify the potential alternative use of δD_K37s measurements as a proxy for non-thermal, physiological stress impacts on the U₃₇^K' paleotemperature index. Batch-culture experiments with the haptophyte Emiliania huxleyi (CCMP 1742 were conducted to determine the magnitude and variability of the isotopic contrasts between individual C₃₇ alkenones. Further experiments were conducted with Emiliania huxleyi (CCMP 1742 andGephyrocapsa oceanica (PZ3-1 to determine whether, and to what extent, δD_K37s varies between the physiological extremes of nutrient-replete exponential growth and nutrient-depleted senescence. Emiliania huxleyi was observed to exhibit an isotopic contrast between di- and tri-unsaturated C₃₇ alkenones (α_K37:3-K37:2≈0.97 that is nearly identical to that reported recently by others for environmental samples. Furthermore, this contrast appears to be constant with growth stage. The consistency of the offset across different growth stages suggests that a single, well-defined value for α_K37:3-K37:2 may exist and that its use in an isotope mass-balance will allow accurate determination of δD values for individual alkenones without having to rely on time- and labor-intensive chemical separations. The isotopic fractionation between growth medium and C₃₇ alkenones was observed to increase dramatically upon the onset of nutrient-depletion-induced senescence, suggesting that δD_K37s may serve as an objective tool for recognizing and potentially correcting, at least semi-quantitatively, for the effects

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi [corrected]. indicated by metagenomics.

Science.gov (United States)

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-27

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi [corrected] . at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi [corrected]. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi [corrected].

Influence of plankton community structure on the sinking velocity of marine aggregates

Science.gov (United States)

Bach, L. T.; Boxhammer, T.; Larsen, A.; Hildebrandt, N.; Schulz, K. G.; Riebesell, U.

2016-08-01

About 50 Gt of carbon is fixed photosynthetically by surface ocean phytoplankton communities every year. Part of this organic matter is reprocessed within the plankton community to form aggregates which eventually sink and export carbon into the deep ocean. The fraction of organic matter leaving the surface ocean is partly dependent on aggregate sinking velocity which accelerates with increasing aggregate size and density, where the latter is controlled by ballast load and aggregate porosity. In May 2011, we moored nine 25 m deep mesocosms in a Norwegian fjord to assess on a daily basis how plankton community structure affects material properties and sinking velocities of aggregates (Ø 80-400 µm) collected in the mesocosms' sediment traps. We noted that sinking velocity was not necessarily accelerated by opal ballast during diatom blooms, which could be due to relatively high porosity of these rather fresh aggregates. Furthermore, estimated aggregate porosity (Pestimated) decreased as the picoautotroph (0.2-2 µm) fraction of the phytoplankton biomass increased. Thus, picoautotroph-dominated communities may be indicative for food webs promoting a high degree of aggregate repackaging with potential for accelerated sinking. Blooms of the coccolithophore Emiliania huxleyi revealed that cell concentrations of 1500 cells/mL accelerate sinking by about 35-40%, which we estimate (by one-dimensional modeling) to elevate organic matter transfer efficiency through the mesopelagic from 14 to 24%. Our results indicate that sinking velocities are influenced by the complex interplay between the availability of ballast minerals and aggregate packaging; both of which are controlled by plankton community structure.

Marine ecosystem community carbon and nutrient uptake stoichiometry under varying ocean acidification during the PeECE III experiment

Directory of Open Access Journals (Sweden)

R. G. J. Bellerby

2008-11-01

Full Text Available Changes to seawater inorganic carbon and nutrient concentrations in response to the deliberate CO₂ perturbation of natural plankton assemblages were studied during the 2005 Pelagic Ecosystem CO₂ Enrichment (PeECE III experiment. Inverse analysis of the temporal inorganic carbon dioxide system and nutrient variations was used to determine the net community stoichiometric uptake characteristics of a natural pelagic ecosystem perturbed over a range of pCO₂ scenarios (350, 700 and 1050 μatm. Nutrient uptake showed no sensitivity to CO₂ treatment. There was enhanced carbon production relative to nutrient consumption in the higher CO₂ treatments which was positively correlated with the initial CO₂ concentration. There was no significant calcification response to changing CO₂ in Emiliania huxleyi by the peak of the bloom and all treatments exhibited low particulate inorganic carbon production (~15 μmol kg⁻¹. With insignificant air-sea CO₂ exchange across the treatments, the enhanced carbon uptake was due to increase organic carbon production. The inferred cumulative C:N:P stoichiometry of organic production increased with CO₂ treatment from 1:6.3:121 to 1:7.1:144 to 1:8.25:168 at the height of the bloom. This study discusses how ocean acidification may incur modification to the stoichiometry of pelagic production and have consequences for ocean biogeochemical cycling.

Phytoplankton-Associated Bacterial Community Composition and Succession during Toxic Diatom Bloom and Non-Bloom Events.

Science.gov (United States)

Sison-Mangus, Marilou P; Jiang, Sunny; Kudela, Raphael M; Mehic, Sanjin

2016-01-01

Pseudo-nitzschia blooms often occur in coastal and open ocean environments, sometimes leading to the production of the neurotoxin domoic acid that can cause severe negative impacts to higher trophic levels. Increasing evidence suggests a close relationship between phytoplankton bloom and bacterial assemblages, however, the microbial composition and succession during a bloom process is unknown. Here, we investigate the bacterial assemblages before, during and after toxic and non-toxic Pseudo-nitzschia blooms to determine the patterns of bacterial succession in a natural bloom setting. Opportunistic sampling of bacterial community profiles were determined weekly at Santa Cruz Municipal Wharf by 454 pyrosequencing and analyzed together with domoic acid levels, phytoplankton community and biomass, nutrients and temperature. We asked if the bacterial communities are similar between bloom and non-bloom events and if domoic acid or the presence of toxic algal species acts as a driving force that can significantly structure phytoplankton-associated bacterial communities. We found that bacterial diversity generally increases when Pseudo-nitzschia numbers decline. Furthermore, bacterial diversity is higher when the low-DA producing P. fraudulenta dominates the algal bloom while bacterial diversity is lower when high-DA producing P. australis dominates the algal bloom, suggesting that the presence of algal toxin can structure bacterial community. We also found bloom-related succession patterns among associated bacterial groups; Gamma-proteobacteria, were dominant during low toxic P. fraudulenta blooms comprising mostly of Vibrio spp., which increased in relative abundance (6-65%) as the bloom progresses. On the other hand, Firmicutes bacteria comprising mostly of Planococcus spp. (12-86%) dominate during high toxic P. australis blooms, with the bacterial assemblage showing the same bloom-related successional patterns in three independent bloom events. Other environmental

Phytoplankton-associated bacterial community composition and succession during toxic diatom bloom and non-bloom events

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Marilou P. Sison-Mangus

2016-09-01

Full Text Available Pseudo-nitzschia blooms often occur in coastal and open ocean environments, sometimes leading to the production of the neurotoxin domoic acid that can cause severe negative impacts to higher trophic levels. Increasing evidence suggests a close relationship between phytoplankton bloom and bacterial assemblages, however, the microbial composition and succession during a bloom process is unknown. Here, we investigate the bacterial assemblages before, during and after toxic and non-toxic Pseudo-nitzschia blooms to determine the patterns of bacterial succession in a natural bloom setting. Opportunistic sampling of bacterial community profiles were determined weekly at Santa Cruz Municipal Wharf by 454 pyrosequencing and analyzed together with domoic acid levels, phytoplankton community and biomass, nutrients and temperature. We asked if the bacterial communities are similar between bloom and non-bloom events and if domoic acid or the presence of toxic algal species acts as a driving force that can significantly structure phytoplankton-associated bacterial communities. We found that bacterial diversity generally increases when Pseudo-nitzschia numbers decline. Furthermore, bacterial diversity is higher when the low-DA producing P. fraudulenta dominates the algal bloom while bacterial diversity is lower when high-DA producing P. australis dominates the algal bloom, suggesting that the presence of algal toxin can structure bacterial community. We also found bloom-related succession patterns among associated bacterial groups; Gamma-proteobacteria, were dominant during low toxic P. fraudulenta blooms comprising mostly of Vibrio spp., which increased in relative abundance (6%-65% as the bloom progresses. On the other hand, Firmicutes bacteria comprising mostly of Planococcus spp. (12%- 86% dominate during high toxic P. australis blooms, with the bacterial assemblage showing the same bloom-related successional patterns in 3 independent bloom events. Other

Changes in calcification of coccoliths under stable atmospheric CO2

DEFF Research Database (Denmark)

Berger, C.; Meier, K. J. S.; Kinkel, H.

2014-01-01

, which constitutes the main part of the assemblage in the North Atlantic. Records of average coccolith weights from three Holocene sediment cores along a north-south transect in the North Atlantic were analysed. During the Holocene, mean weight (and therefore calcification) of Noelaerhabdaceae (Emiliania...... huxleyi and Gephyrocapsa) coccoliths decreased at the Azores (Geofar KF 16) from around 7 to 6 pg, but increased at the Rockall Plateau (ODP site 980) from around 6 to 8 pg, and at the Voring Plateau (MD08-3192) from 7 to 10 pg. The amplitude of average weight variability is within the range of glacial...... Plateau. Here, more favourable productivity conditions apparently lead to an increase in coccolith weight, either due to the capability of coccolithophore species, especially E. huxleyi, to adapt to decreasing carbonate ion concentration or due to a shift towards heavier calcifying morphotypes....

Harmful algal blooms

Digital Repository Service at National Institute of Oceanography (India)

Bhat, S.R.; PrabhaDevi; DeSouza, L.; Verlecar, X.N.; Naik, C.G.

as harmful algal bloom. Bloom formation is a natural process and it enhances biological productivity, but turns worrisome when caused by toxic species, leading to massive fish mortalities and hazards to human health. Incidences of'red tide' are increasing...

Bioaccumulation of 137Cs and 57Co by five marine phytoplankton species

International Nuclear Information System (INIS)

Heldal, H.E.; Stupakoff, I.; Fisher, N.S.

2001-01-01

Under controlled laboratory conditions, we have examined the bioaccumulation of 137 Cs and 57 Co in three prymnesiophytes, the coccolithophorid Emiliania huxleyi and the non-calcareous species Isochrysis galbana and Phaeocystis globosa, and two diatoms Skeletonema costatum and Thalassiosira pseudonana. We measured the uptake in growing and non-growing cells and determined concentration factors on both volume and dry weight bases. For uptake of 57 Co in non-growing cells, volume concentration factors (VCF) at equilibrium ranged from 0.2x10 3 for E. huxleyi to 4x10 3 for T. pseudonana. For uptake of 137 Cs in non-growing cells, the VCFs were low for all species and the uptake pattern seemed unsystematic. The results suggest that, in contrast to Co, the cycling and bioaccumulation of Cs in marine animals are unlikely to be affected by Cs accumulation in primary producers

Seasonal cooling and blooming in tropical oceans

Science.gov (United States)

Longhurst, Alan

1993-11-01

The relative importance of tropical pelagic algal blooms in not yet fully appreciated and the way they are induced not well understood. The tropical Atlantic supports pelagic blooms together equivalent to the North Atlantic spring bloom. These blooms are driven by thermocline tilting, curl of wind stress and eddy upwelling as the ocean responds to intensified basin-scale winds in boreal summer. The dimensions of the Pacific Ocean are such that seasonal thermocline tilting does not occur, and nutrient conditions are such that tilting might not induce bloom, in any case. Divergence at the equator is a separate process that strengthens the Atlantic bloom, is more prominent in the eastern Pacific, and in the Indian Ocean induces a bloom only in the western part of the ocean. Where western jet currents are retroflected from the coast off Somalia and Brazil, eddy upwelling induces prominent blooms. In the eastward flow of the northern equatorial countercurrents, positive wind curl stress induces Ekman pumping and the induction of algal blooms aligned with the currents. Some apparent algal bloom, such as that seen frequently in CZCS images westwards from Senegal, must be due to interference from airborne dust.

Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae.

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Blake T Hovde

Full Text Available Haptophytes are recognized as seminal players in aquatic ecosystem function. These algae are important in global carbon sequestration, form destructive harmful blooms, and given their rich fatty acid content, serve as a highly nutritive food source to a broad range of eco-cohorts. Haptophyte dominance in both fresh and marine waters is supported by the mixotrophic nature of many taxa. Despite their importance the nuclear genome sequence of only one haptophyte, Emiliania huxleyi (Isochrysidales, is available. Here we report the draft genome sequence of Chrysochromulina tobin (Prymnesiales, and transcriptome data collected at seven time points over a 24-hour light/dark cycle. The nuclear genome of C. tobin is small (59 Mb, compact (∼ 40% of the genome is protein coding and encodes approximately 16,777 genes. Genes important to fatty acid synthesis, modification, and catabolism show distinct patterns of expression when monitored over the circadian photoperiod. The C. tobin genome harbors the first hybrid polyketide synthase/non-ribosomal peptide synthase gene complex reported for an algal species, and encodes potential anti-microbial peptides and proteins involved in multidrug and toxic compound extrusion. A new haptophyte xanthorhodopsin was also identified, together with two "red" RuBisCO activases that are shared across many algal lineages. The Chrysochromulina tobin genome sequence provides new information on the evolutionary history, ecology and economic importance of haptophytes.

The White Ocean hypothesis: a late Pleistocene Southern Ocean governed by Coccolithophores and driven by phosphorus

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Jose Abel Flores

2012-07-01

Full Text Available Paleoproductivity is a critical component in past ocean biogeochemistry, but accurate reconstructions of productivity are often hindered by limited integration of proxies. Here, we integrate geochemical (phosphorus and micropaleontological proxies at millennial timescales, revealing that the coccolithophore record in the Subantarctic zone of the South Atlantic Ocean is driven largely by variations in marine phosphorus availability. A quantitative micropaleontological and geochemical analysis carried out in sediments retrieved from ODP Site 1089 (Subantarctic Zone reveals that most of the export productivity in this region over the last 0.5 my was due to coccolithophores. Glacial periods were generally intervals of high productivity, with productivity reaching a peak at terminations. Particularly high productivity was observed at Termination V and Termination IV, events that are characterized by high abundance of coccolithophores and maxima in the phosphorus/titanium and strontium/titanium records. We link the increase in productivity both to regional oceanographic phenomena, i.e., the northward displacement of the upwelling cell of the Antarctic divergence when the ice-sheet expanded, and to the increase in the inventory of phosphorus in the ocean due to enhanced transfer of this nutrient from continental margins during glacial lowstands in sea level. The Mid-Brunhes interval stands out from the rest of the record, being dominated by the small and highly-calcified species Gephyrocapsa caribbeanica that provides most of the carbonate in these sediments. This likely represents higher availability of phosphorus in the surface ocean, especially in mesotrophic and oligotrophic zones. Under these condition, some coccolithophore species developed an r-strategy (opportunistic species; growth rate maximized resulting in the bloom of G. caribbeanica. These seasonal blooms of may have inducedwhite tides similar to those observed today in Emiliania huxleyi.

Blooming Artifact Reduction in Coronary Artery Calcification by A New De-blooming Algorithm: Initial Study.

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Li, Ping; Xu, Lei; Yang, Lin; Wang, Rui; Hsieh, Jiang; Sun, Zhonghua; Fan, Zhanming; Leipsic, Jonathon A

2018-05-02

The aim of this study was to investigate the use of de-blooming algorithm in coronary CT angiography (CCTA) for optimal evaluation of calcified plaques. Calcified plaques were simulated on a coronary vessel phantom and a cardiac motion phantom. Two convolution kernels, standard (STND) and high-definition standard (HD STND), were used for imaging reconstruction. A dedicated de-blooming algorithm was used for imaging processing. We found a smaller bias towards measurement of stenosis using the de-blooming algorithm (STND: bias 24.6% vs 15.0%, range 10.2% to 39.0% vs 4.0% to 25.9%; HD STND: bias 17.9% vs 11.0%, range 8.9% to 30.6% vs 0.5% to 21.5%). With use of de-blooming algorithm, specificity for diagnosing significant stenosis increased from 45.8% to 75.0% (STND), from 62.5% to 83.3% (HD STND); while positive predictive value (PPV) increased from 69.8% to 83.3% (STND), from 76.9% to 88.2% (HD STND). In the patient group, reduction in calcification volume was 48.1 ± 10.3%, reduction in coronary diameter stenosis over calcified plaque was 52.4 ± 24.2%. Our results suggest that the novel de-blooming algorithm could effectively decrease the blooming artifacts caused by coronary calcified plaques, and consequently improve diagnostic accuracy of CCTA in assessing coronary stenosis.

Individual and interacting effects of pCO2 and temperature on Emiliania huxleyi calcification: study of the calcite production, the coccolith morphology and the coccosphere size

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K. Sabbe

2010-05-01

Full Text Available The impact of ocean acidification and increased water temperature on marine ecosystems, in particular those involving calcifying organisms, has been gradually recognised. We examined the individual and combined effects of increased pCO2 (180 ppmV CO2, 380 ppmV CO2 and 750 ppmV CO2 corresponding to past, present and future CO2 conditions, respectively and temperature (13 °C and 18 °C during the exponential growth phase of the coccolithophore E. huxleyi using batch culture experiments. We showed that cellular production rate of Particulate Organic Carbon (POC increased from the present to the future CO2 treatments at 13 °C. A significant effect of pCO2 and of temperature on calcification was found, manifesting itself in a lower cellular production rate of Particulate Inorganic Carbon (PIC as well as a lower PIC:POC ratio at future CO2 levels and at 18 °C. Coccosphere-sized particles showed a size reduction with both increasing temperature and CO2 concentration. The influence of the different treatments on coccolith morphology was studied by categorizing SEM coccolith micrographs. The number of well-formed coccoliths decreased with increasing pCO2 while temperature did not have a significant impact on coccolith morphology. No interacting effects of pCO2 and temperature were observed on calcite production, coccolith morphology or on coccosphere size. Finally, our results suggest that ocean acidification might have a larger adverse impact on coccolithophorid calcification than surface water warming.

Spatial and temporal variability in coccolithophore abundance and distribution in the NW Iberian coastal upwelling system

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B. Ausín

2018-01-01

Full Text Available A systematic investigation of the spatial and temporal variability in coccolithophore abundance and distribution through the water column of the NW Iberian coastal upwelling system was performed. From July 2011 to June 2012, monthly sampling at various water depths was conducted at two parallel stations located at 42° N. Total coccosphere abundance was higher at the outer-shelf station, where warmer, nutrient-depleted waters favoured coccolithophore rather than phytoplanktonic diatom blooms, which are known to dominate the inner-shelf location. In seasonal terms, higher coccosphere and coccolith abundances were registered at both stations during upwelling seasons, coinciding with high irradiance levels. This was typically in conjunction with stratified, nutrient-poor conditions (i.e. relaxing upwelling conditions. However, it also occurred during some upwelling events of colder, nutrient-rich subsurface waters onto the continental shelf. Minimum abundances were generally found during downwelling periods, with unexpectedly high coccolith abundance registered in subsurface waters at the inner-shelf station. This finding can only be explained if strong storms during these downwelling periods favoured resuspension processes, thus remobilizing deposited coccoliths from surface sediments, and hence hampering the identification of autochthonous coccolithophore community structure. At both locations, the major coccolithophore assemblages were dominated by Emiliania huxleyi, small Gephyrocapsa group, Gephyrocapsa oceanica, Florisphaera profunda, Syracosphaera spp., Coronosphaera mediterranea, and Calcidiscus leptoporus. Ecological preferences of the different taxa were assessed by exploring the relationships between environmental conditions and temporal and vertical variability in coccosphere abundance. These findings provide relevant information for the use of fossil coccolith assemblages in marine sediment records, in order to infer past

Spatial and temporal variability in coccolithophore abundance and distribution in the NW Iberian coastal upwelling system

Science.gov (United States)

Ausín, Blanca; Zúñiga, Diana; Flores, Jose A.; Cavaleiro, Catarina; Froján, María; Villacieros-Robineau, Nicolás; Alonso-Pérez, Fernando; Arbones, Belén; Santos, Celia; de la Granda, Francisco; Castro, Carmen G.; Abrantes, Fátima; Eglinton, Timothy I.; Salgueiro, Emilia

2018-01-01

A systematic investigation of the spatial and temporal variability in coccolithophore abundance and distribution through the water column of the NW Iberian coastal upwelling system was performed. From July 2011 to June 2012, monthly sampling at various water depths was conducted at two parallel stations located at 42° N. Total coccosphere abundance was higher at the outer-shelf station, where warmer, nutrient-depleted waters favoured coccolithophore rather than phytoplanktonic diatom blooms, which are known to dominate the inner-shelf location. In seasonal terms, higher coccosphere and coccolith abundances were registered at both stations during upwelling seasons, coinciding with high irradiance levels. This was typically in conjunction with stratified, nutrient-poor conditions (i.e. relaxing upwelling conditions). However, it also occurred during some upwelling events of colder, nutrient-rich subsurface waters onto the continental shelf. Minimum abundances were generally found during downwelling periods, with unexpectedly high coccolith abundance registered in subsurface waters at the inner-shelf station. This finding can only be explained if strong storms during these downwelling periods favoured resuspension processes, thus remobilizing deposited coccoliths from surface sediments, and hence hampering the identification of autochthonous coccolithophore community structure. At both locations, the major coccolithophore assemblages were dominated by Emiliania huxleyi, small Gephyrocapsa group, Gephyrocapsa oceanica, Florisphaera profunda, Syracosphaera spp., Coronosphaera mediterranea, and Calcidiscus leptoporus. Ecological preferences of the different taxa were assessed by exploring the relationships between environmental conditions and temporal and vertical variability in coccosphere abundance. These findings provide relevant information for the use of fossil coccolith assemblages in marine sediment records, in order to infer past environmental conditions, of

Selenium Uptake and Volatilization by Marine Algae

Science.gov (United States)

Luxem, Katja E.; Vriens, Bas; Wagner, Bettina; Behra, Renata; Winkel, Lenny H. E.

2015-04-01

Selenium (Se) is an essential trace nutrient for humans. An estimated one half to one billion people worldwide suffer from Se deficiency, which is due to low concentrations and bioavailability of Se in soils where crops are grown. It has been hypothesized that more than half of the atmospheric Se deposition to soils is derived from the marine system, where microorganisms methylate and volatilize Se. Based on model results from the late 1980s, the atmospheric flux of these biogenic volatile Se compounds is around 9 Gt/year, with two thirds coming from the marine biosphere. Algae, fungi, and bacteria are known to methylate Se. Although algal Se uptake, metabolism, and methylation influence the speciation and bioavailability of Se in the oceans, these processes have not been quantified under environmentally relevant conditions and are likely to differ among organisms. Therefore, we are investigating the uptake and methylation of the two main inorganic Se species (selenate and selenite) by three globally relevant microalgae: Phaeocystis globosa, the coccolithophorid Emiliania huxleyi, and the diatom Thalassiosira oceanica. Selenium uptake and methylation were quantified in a batch experiment, where parallel gas-tight microcosms in a climate chamber were coupled to a gas-trapping system. For E. huxleyi, selenite uptake was strongly dependent on aqueous phosphate concentrations, which agrees with prior evidence that selenite uptake by phosphate transporters is a significant Se source for marine algae. Selenate uptake was much lower than selenite uptake. The most important volatile Se compounds produced were dimethyl selenide, dimethyl diselenide, and dimethyl selenyl sulfide. Production rates of volatile Se species were larger with increasing intracellular Se concentration and in the decline phase of the alga. Similar experiments are being carried out with P. globosa and T. oceanica. Our results indicate that marine algae are important for the global cycling of Se

Anaerobic Coculture of Microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68°C Enhances Generation of n-Alkane-Rich Biofuels after Pyrolysis

Science.gov (United States)

Matsuyama, Shigeru; Igarashi, Kensuke; Utsumi, Motoo; Shiraiwa, Yoshihiro; Kuwabara, Tomohiko

2013-01-01

We tested different alga-bacterium-archaeon consortia to investigate the production of oil-like mixtures, expecting that n-alkane-rich biofuels might be synthesized after pyrolysis. Thermosipho globiformans and Methanocaldococcus jannaschii were cocultured at 68°C with microalgae for 9 days under two anaerobic conditions, followed by pyrolysis at 300°C for 4 days. Arthrospira platensis (Cyanobacteria), Dunaliella tertiolecta (Chlorophyta), Emiliania huxleyi (Haptophyta), and Euglena gracilis (Euglenophyta) served as microalgal raw materials. D. tertiolecta, E. huxleyi, and E. gracilis cocultured with the bacterium and archaeon inhibited their growth and CH4 production. E. huxleyi had the strongest inhibitory effect. Biofuel generation was enhanced by reducing impurities containing alkanenitriles during pyrolysis. The composition and amounts of n-alkanes produced by pyrolysis were closely related to the lipid contents and composition of the microalgae. Pyrolysis of A. platensis and D. tertiolecta containing mainly phospholipids and glycolipids generated short-carbon-chain n-alkanes (n-tridecane to n-nonadecane) and considerable amounts of isoprenoids. E. gracilis also produced mainly short n-alkanes. In contrast, E. huxleyi containing long-chain (31 and 33 carbon atoms) alkenes and very long-chain (37 to 39 carbon atoms) alkenones, in addition to phospholipids and glycolipids, generated a high yield of n-alkanes of various lengths (n-tridecane to n-pentatriacontane). The gas chromatography-mass spectrometry (GC-MS) profiles of these n-alkanes were similar to those of native petroleum crude oils despite containing a considerable amount of n-hentriacontane. The ratio of phytane to n-octadecane was also similar to that of native crude oils. PMID:23183975

Characterization of [8-ethyl]-chlorophyll c3 from Emiliania huxleyi.

Science.gov (United States)

Álvarez, Susana; Zapata, Manuel; Garrido, José L; Vaz, Belén

2012-06-04

We report herein the isolation and complete characterization of a member of the chlorophyll c family, designated as [8-ethyl]-chlorophyll c(3) ([8-ethyl]-chl c(3)). Structural elucidation of this pigment rested on the analysis of mono- and bidimensional NMR, UV-VIS spectroscopy and ESI-MS data, and the configuration at the 13(2) position on chiral HPLC analysis.

Seasonal and interannual variabilities of coccolithophore blooms in the Bay of Biscay and the Celtic Sea observed from a 18-year time-series of non-algal Suspended Particulate Matter images

Science.gov (United States)

Perrot, Laurie; Gohin, Francis; Ruiz-Pino, Diana; Lampert, Luis

2016-04-01

Coccolithophores belong to the nano-phytoplankton size-class and produce CaCO3 scales called coccoliths which form the «shell» of the algae cell. Coccoliths are in the size range of a few μm and can also be detached from the cell in the water. This phytoplankton group has an ubiquitous distribution in all oceans but blooms only in some oceanic regions, like the North East Atlantic ocean and the South Western Atlantic (Patagonian Sea). At a global scale coccolithopore blooms are studied in regard of CaCO3 production and three potential feedback on climate change: albedo modification by the way of dimethylsulfide (DMS) production and atmospheric CO2 source by calcification and a CO2 pump by photosynthesis. As the oceans are more and more acidified by anthropogenic CO2 emissions, coccolithophores generally are expected to be negatively affected. However, recent studies have shown an increase in coccolithophore occurrence in the North Atlantic. A poleward expansion of the coccolithophore Emiliana Huxleyi has also been pointed out. By using a simplified fuzzy method applied to a 18-year time series of SeaWiFS (1998-2002) and MODIS (2003-2015) spectral reflectance, we assessed the seasonal and inter-annual variability of coccolithophore blooms in the vicinity of the shelf break in the Bay of Biscay and the Celtic Sea After identification of the coccolith pixels by applying the fuzzy method, the abundance of coccoliths is assessed from a database of non-algal Suspended Particulate Matter (SPM). Although a regular pattern in the phenology of the blooms is observed, starting south in April in Biscay and moving northwards until July in Ireland, there is a high seasonal and interannual variability in the extent of the blooms. Year 2014 shows very low concentrations of detached coccoliths (twice less than average) from space and anomalies point out the maximum level in 2001. Non-algal SPM, derived from a procedure defined for the continental shelf, appears to be well

Wind-driven marine phytoplank blooms: Satellite observation and analysis

Science.gov (United States)

Tang, DanLing

2016-07-01

Algal bloom is defined as a rapid increase or accumulation in biomass in an aquatic system. It not only can increase the primary production but also could result in negative ecological consequence, e.g.,Harmful Algal Blooms (HABs). According to the classic theory for the formation of algal blooms "critical depth" and "eutrophication", oligotrophic sea area is usually difficult to form a large area of algal blooms, and actuallythe traditional observation is only sporadic capture to the existence of algal blooms.Taking full advantage of multiple data of satellite remote sensing , this study introduces "Wind-driven algal blooms in open oceans: observation and mechanisms" It explained except classic coastal Ekman transport, the wind through a variety of mechanisms affecting the formation of algal blooms. Proposed a conceptual model of "Strong wind -upwelling-nutrient-phytoplankton blooms" in Western South China Sea (SCS) to assess role of wind-induced advection transport in phytoplankton bloom formation. It illustrates the nutrient resources that support long-term offshore phytoplankton blooms in the western SCS; (2)Proposal of the theory that "typhoons cause vertical mixing, induce phytoplankton blooms", and quantify their important contribution to marine primary production; Proposal a new ecological index for typhoon. Proposed remote sensing inversion models. (3)Finding of the spatial and temporaldistributions pattern of harmful algal bloom (HAB)and species variations of HAB in the South Yellow Sea and East China Sea, and in the Pearl River estuary, and their oceanic dynamic mechanisms related with monsoon; The project developed new techniques and generated new knowledge, which significantly improved understanding of the formation mechanisms of algal blooms. The proposed "wind-pump" mechanism integrates theoretical system combined "ocean dynamics, development of algal blooms, and impact on primary production", which will benefit fisheries management. These

Microcystin in cyanobacterial blooms in a Chilean lake.

Science.gov (United States)

Campos, V; Cantarero, S; Urrutia, H; Heinze, R; Wirsing, B; Neumann, U; Weckesser, J

1999-05-01

Cyanobacterial blooms dominated by Microcystis sp. occurred in lake Rocuant ("marisma", near Concepción/Chile) in February 1995 and 1996. In the bloom samples collected in both years the hepatotoxin microcystin was detected by RP-HPLC in both samples and in the sample of 1995 also by a toxicity assay using primary rat hepatocytes. In the bloom of 1995, the microcystin content of the dry bloom biomass was determined to be 130 micrograms/g on the basis of the RP-HPLC peak area and 800 micrograms/g on the basis of the rat hepatotoxicity assay, respectively. In the bloom of 1996, RP-HPLC analysis revealed a microcystin content of 8.13 micrograms/g bloom material dry weight. In this year no hepatotoxicity was measured using a concentration range up to 0.8 mg (d. w.) of bloom material per ml in the rat hepatotoxicity assay. This is the first report on the detection of microcystins in Chilean water bodies.

A New Bloom: Transforming Learning

Science.gov (United States)

Cochran, David; Conklin, Jack

2007-01-01

This article discusses a new design for the classic Bloom's Taxonomy developed by Anderson, L. W. & Krathwohl, D. (2001), which can be used to evaluate learners' technology-enhanced experience in more powerful and critical ways. The New Bloom's Taxonomy incorporates contemporary research on learning and human cognition into its model. The…

Effect of metals on the lytic cycle of the coccolithovirus, EhV86.

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Martha eGledhill

2012-04-01

Full Text Available In this study we show that metals, and in particular copper (Cu, can disrupt the lytic cycle in the Emiliania huxleyi - EhV86 host-virus system. Numbers of virus particles produced per E. huxleyi cell and E. huxleyi lysis rates were reduced by Cu at total metal concentrations over 500 nM in the presence of EDTA (ethylenediaminetetraacetic acid, and 250 nM in the absence of EDTA in acute short term exposure experiments. Zinc (Zn, cadmium (Cd and cobalt (Co were not observed to affect the lysis rate of EhV86 in these experiments. The cellular glutathione (GSH content increased in virus infected cells, but not as a result of metal exposure. In contrast, the cellular content of phytochelatins (PCs increased only in response to metal exposure. The increase in gluthatione content is consistent with increases in the production of reactive oxygen species (ROS on viral infection, while increases in PC content are likely linked to metal homeostasis and indicate that metal toxicity to the host was not affected by viral infection. We propose that Cu prevents lytic production of EhV86 by interfering with virus DNA (deoxyribonucleic acid synthesis through a transcriptional block, which ultimately suppresses the formation of ROS, a biochemical response required for successful virus infection.

Ecological and taphonomical influences on coccoliths in surface sediments in the shelf of the Yellow and East China Seas

Science.gov (United States)

Jin, Xiaobo; Liu, Chuanlian

2017-05-01

Coccoliths, combined with sediment grain size, carbonate calcium and organic matters content, were analyzed to assess the ecological and taphonomical influences on coccolith distribution patterns in surface sediments in the continental shelf of the Yellow and East China Seas. Coccolith abundances ranged from 0 to 2.08×109 coccoliths g-1 sediment. The increasing abundance from the coastal inner shelf to the seaward middle shelf generally reflects the ecological fact that living coccolithophores are more abundant in the mesotrophic shelf waters than in the eutrophic coastal waters, although their deposits are still controlled by taphonomical effects, such as bottom (tidal) currents and calcite preservation conditions. Most abundant coccoliths are found in the fine-grained sediments of southwestern Cheju Island, where both ecology and taphonomy favor coccolith preservation. Still, large densities of coccoliths (>108 coccoliths g-1 sediment) are also found in coarse-grained relict sediments in the middle shelf. Coccolith assemblages were predominated by Gephyrocapsa oceanica and Emiliania huxleyi. The relative abundance of E. huxleyi, in addition to ecological reasons, may relate to selective post-mortem dissolution, since small E. huxleyi coccoliths are more susceptible to dissolution. Coccolith calcite has minor contributions (<1% to 12%) to total sediment CaCO3, and the main parts are attributed to terrigenous CaCO3 debris and relict shell fragments.

Coccolithophore responses to environmental variability in the South China Sea: species composition and calcite content

Science.gov (United States)

Jin, Xiaobo; Liu, Chuanlian; Poulton, Alex J.; Dai, Minhan; Guo, Xianghui

2016-08-01

Coccolithophore contributions to the global marine carbon cycle are regulated by the calcite content of their scales (coccoliths) and the relative cellular levels of photosynthesis and calcification rates. All three of these factors vary between coccolithophore species and with response to the growth environment. Here, water samples were collected in the northern basin of the South China Sea (SCS) during summer 2014 in order to examine how environmental variability influenced species composition and cellular levels of calcite content. Average coccolithophore abundance and their calcite concentration in the water column were 11.82 cells mL-1 and 1508.3 pg C mL-1, respectively, during the cruise. Water samples can be divided into three floral groups according to their distinct coccolithophore communities. The vertical structure of the coccolithophore community in the water column was controlled by the trophic conditions, which were regulated by mesoscale eddies across the SCS basin. The evaluation of coccolithophore-based calcite in the surface ocean also showed that three key species in the SCS (Emiliania huxleyi, Gephyrocapsa oceanica, Florisphaera profunda) and other larger, numerically rare species made almost equal contributions to total coccolith-based calcite in the water column. For Emiliania huxleyi biometry measurements, coccolith size positively correlated with nutrients (nitrate, phosphate), and it is suggested that coccolith length is influenced by light and nutrients through the regulation of growth rates. Larger-sized coccoliths were also linked statistically to low pH and calcite saturation states; however, it is not a simple cause and effect relationship, as carbonate chemistry was strongly co-correlated with the other key environmental factors (nutrients, light).

Coccolithophore diversity and dynamics at a coastal site in the Gulf of Trieste (northern Adriatic Sea)

Science.gov (United States)

Cerino, Federica; Malinverno, Elisa; Fornasaro, Daniela; Kralj, Martina; Cabrini, Marina

2017-09-01

Two years-data (May 2011-February 2013) obtained from a monthly sampling carried out at the coastal long term Ecological Research station C1-LTER in the Gulf of Trieste (northern Adriatic Sea) were analysed to describe the seasonal dynamics and diversity of coccolithophore assemblages and to assess their relationship with environmental forcing. Coccolithophores represented 10.7% of the total Utermöhl phytoplankton that were mainly dominated by small (Emiliania huxleyi, and a secondary peak in May-June (0.7-15.0 · 104 coccospheres L-1), coinciding with the increase of the light intensity and the beginning of the seasonal stratification, dominated by holococcolithophores and small Syracosphaera species. The most abundant taxa were E. huxleyi and holococcolithophores, followed by Acanthoica quattrospina, Syracosphaera species and other minor species. Statistical analyses recognized four distinct groups, corresponding to seasonal variations of environmental conditions. Considering the two years, some species displayed a recurrent seasonal pattern highlighting possible species-specific ecological requirements, while others showed an interannual variability probably due to local factors.

Synchronized Regulation of Different Zwitterionic Metabolites in the Osmoadaption of Phytoplankton

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Georg Pohnert

2013-06-01

Full Text Available The ability to adapt to different seawater salinities is essential for cosmopolitan marine phytoplankton living in very diverse habitats. In this study, we examined the role of small zwitterionic metabolites in the osmoadaption of two common microalgae species Emiliania huxleyi and Prorocentrum minimum. By cultivation of the algae under salinities between 16‰ and 38‰ and subsequent analysis of dimethylsulfoniopropionate (DMSP, glycine betaine (GBT, gonyol, homarine, trigonelline, dimethylsulfonioacetate, trimethylammonium propionate, and trimethylammonium butyrate using HPLC-MS, we could reveal two fundamentally different osmoadaption mechanisms. While E. huxleyi responded with cell size reduction and a nearly constant ratio between the major metabolites DMSP, GBT and homarine to increasing salinity, osmolyte composition of P. minimum changed dramatically. In this alga DMSP concentration remained nearly constant at 18.6 mM between 20‰ and 32‰ but the amount of GBT and dimethylsulfonioacetate increased from 4% to 30% of total investigated osmolytes. Direct quantification of zwitterionic metabolites via LC-MS is a powerful tool to unravel the complex osmoadaption and regulation mechanisms of marine phytoplankton.

Coccolithophores and calcite saturation state in the Baltic and Black Seas

Directory of Open Access Journals (Sweden)

T. Tyrrell

2008-04-01

Full Text Available The Baltic and Black Seas are both brackish, that is to say both have salinities intermediate between freshwater and seawater. The coccolithophore Emiliania huxleyi is abundant in one, the Black Sea, but absent from the other, the Baltic Sea. Here we present summertime coccolithophore measurements confirming this difference, as well as data on the calcium carbonate saturation state of the Baltic Sea. We find that the Baltic Sea becomes undersaturated (or nearly so in winter, with respect to both the aragonite and calcite mineral forms of CaCO₃. Data for the Black Sea are more limited, but it appears to remain strongly supersaturated year-round. The absence of E. huxleyi from the Baltic Sea could therefore potentially be explained by dissolution of their coccoliths in winter, suggesting that minimum annual (wintertime saturation states could be most important in determining future ocean acidification impacts. In addition to this potential importance of winter saturation state, alternative explanations are also possible, either related to differences in salinity or else to differences in silicate concentrations.

Dynamics of a cyanobacterial bloom in a hypereutrophic reservoir ...

African Journals Online (AJOL)

Blooming and non-blooming periods between 2004 and 2006 in a hypereutrophic reservoir, where cyanobacterial blooms have previously been reported to be permanent, presented an opportunity to characterise factors that may favour cyanobacterial dominance. As a bloom developed in May 2004, a shift to dominance by ...

Jellyfish blooms in China: Dominant species, causes and consequences

International Nuclear Information System (INIS)

Dong Zhijun; Liu Dongyan; Keesing, John K.

2010-01-01

Three jellyfish species, Aurelia aurita, Cyanea nozakii and Nemopilema nomurai, form large blooms in Chinese seas. We report on the distribution and increasing incidence of jellyfish blooms and their consequences in Chinese coastal seas and analyze their relationship to anthropogenically derived changes to the environment in order to determine the possible causes. A. aurita, C. nozakii and N. nomurai form blooms in the temperate Chinese seas including the northern East China Sea, Yellow Sea and Bohai Sea. N. nomurai forms offshore blooms while the other two species bloom mainly in inshore areas. Eutrophication, overfishing, habitat modification for aquaculture and climate change are all possible contributory factors facilitating plausible mechanisms for the proliferation of jellyfish blooms. In the absence of improvement in coastal marine ecosystem health, jellyfish blooms could be sustained and may even spread from the locations in which they now occur.

WATER BLOOM OF BLUEGREEN ALGE IN CARP FISHPOUNDS

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Melita Mihaljević

1996-03-01

Full Text Available The massive development of bluegreen algae (Cyanophyta/Cyanobacteria, the so--called water bloom, is a frequent phenomenon in fishpond ecosystems. This study analyses water bloom development in three carp fishponds owned by a fishbreeding company at Donji Miholjac (Croatia, where one-year-old carps (Cyprinus carpio , were bred in defferent fishstock densities. Analyses of physicallychemical properties of water and phytoplankton biomass were per- formed in fortnight intervals from May till October, 1992. In all there investigated fishponds the water bloom of bluegreen algae developed, but at a different time and showing a different qualitative composition. In the fishpond with fishstock density of 250 kg/ha water bloom consisted of the species Aphanizomenon flos-aquae, and the biggest biomass (131.92 mg/I was found in August. In the fishpond with fishstock density of 437 kg/ha a water bloom consisting of species from the genues Anabaena and species Aphanizomenon flos-aquae developed at the end of July. In the fishpond with the so--called intensive breeding (fishstock density of 750 kg/ha water bloom of the species Microcystis aeruginosa developed as late as September. The beginning of water bloom development was caused by the low value (lower than 7 of the ratio between the quantities of total phosphorus and total nitrogen. However, the qualitative composition of water bloom was influenced by one-year-old carp fingerlings density.

The paradox of algal blooms in oligotrophic waters

Science.gov (United States)

Sundareshwar, P. V.; Upadhyay, S.; Abessa, M. B.; Honomichl, S.; Berdanier, B.; Spaulding, S.; Sandvik, C.; Trennepohl, A.

2010-12-01

Nutrient inputs to streams and lakes, primarily from anthropogenic sources, lead to eutrophic conditions that favor algal blooms with undesirable consequences. In contrast, low nutrient or oligotrophic waters rarely support algal blooms; such ecosystems are typically lower in productivity. Since the mid-1980’s however, the diatom Didymosphenia geminata has dramatically expanded its range colonizing oligotrophic rivers worldwide with blooms appearing as thick benthic mats. This recent global occurrence of Didymosphenia geminata blooms in temperate rivers has been perplexing in its pace of spread and the paradoxical nature of the nuisance growths. The blooms occur primarily in oligotrophic flowing waters, where phosphorus (P) availability often limits primary production. We present a biogeochemical process by which D. geminata mats adsorb both P and iron (Fe) from flowing waters and make P available for cellular uptake. The adsorbed P becomes bioavailable through biogeochemical processes that occur within the mat. The biogeochemical processes observed here while well accepted in benthic systems are novel for algal blooms in lotic habits. Enzymatic and bacterial processes such as Fe and sulfate reduction can release the adsorbed P and increase its bioavailability, creating a positive feedback between total stalk biomass and nutrient availability. Stalk affinity for Fe, Fe-P biogeochemistry, and interaction between watershed processes and climatic setting explain the paradoxical blooms, and the recent global spread of this invasive aquatic species. At a broader scale the study also implies that such algal blooms in oligotrophic environments can fundamentally alter the retention and longitudinal transfer of important nutrients such as P in streams and rivers.

Subsurface phytoplankton blooms fuel pelagic production in the North Sea

DEFF Research Database (Denmark)

Richardson, Kathrine; Visser, Andre; Pedersen, Flemming

2000-01-01

The seasonal phytoplankton biomass distribution pattern in stratified temperate marine waters is traditionally depicted as consisting of spring and autumn blooms. The energy source supporting pelagic summer production is believed to be the spring bloom. However, the spring bloom disappears...... relatively quickly from the water column and a large proportion of the material sedimenting to the bottom following the spring bloom is often comprised of intact phytoplankton cells. Thus, it is easy to argue that the spring bloom is fueling the energy demands of the benthos, but more difficult to argue...... convincingly that energy fixed during the spring bloom is fueling the pelagic production occurring during summer months. We argue here that periodic phytoplankton blooms are occurring during the summer in the North Sea at depths of >25 m and that the accumulated new production [sensu (Dugdale and Goering...

Algal blooms: a perspective from the coasts of India

Digital Repository Service at National Institute of Oceanography (India)

DeSilva, M.S.; Anil, A.C.; Naik, R.K.; DeCosta, P.M.

Algal blooms have been documented along the west and east coasts of India. A review of bloom occurrences in Indian waters from 1908 to 2009 points out that a total of 101 cases have been reported. A comparison of the bloom cases reported before...

Bacterial community transcription patterns during a marine phytoplankton bloom.

Science.gov (United States)

Rinta-Kanto, Johanna M; Sun, Shulei; Sharma, Shalabh; Kiene, Ronald P; Moran, Mary Ann

2012-01-01

Bacterioplankton consume a large proportion of photosynthetically fixed carbon in the ocean and control its biogeochemical fate. We used an experimental metatranscriptomics approach to compare bacterial activities that route energy and nutrients during a phytoplankton bloom compared with non-bloom conditions. mRNAs were sequenced from duplicate bloom and control microcosms 1 day after a phytoplankton biomass peak, and transcript copies per litre of seawater were calculated using an internal mRNA standard. Transcriptome analysis revealed a potential novel mechanism for enhanced efficiency during carbon-limited growth, mediated through membrane-bound pyrophosphatases [V-type H(+)-translocating; hppA]; bloom bacterioplankton participated less in this metabolic energy scavenging than non-bloom bacterioplankton, with possible implications for differences in growth yields on organic substrates. Bloom bacterioplankton transcribed more copies of genes predicted to increase cell surface adhesiveness, mediated by changes in bacterial signalling molecules related to biofilm formation and motility; these may be important in microbial aggregate formation. Bloom bacterioplankton also transcribed more copies of genes for organic acid utilization, suggesting an increased importance of this compound class in the bioreactive organic matter released during phytoplankton blooms. Transcription patterns were surprisingly faithful within a taxon regardless of treatment, suggesting that phylogeny broadly predicts the ecological roles of bacterial groups across 'boom' and 'bust' environmental backgrounds. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Plankton bloom controlled by horizontal stirring

Science.gov (United States)

McKiver, W.; Neufeld, Z.; Scheuring, I.

2009-10-01

Here we show a simple mechanism in which changes in the rate of horizontal stirring by mesoscale ocean eddies can trigger or suppress plankton blooms and can lead to an abrupt change in the average plankton density. We consider a single species phytoplankton model with logistic growth, grazing and a spatially non-uniform carrying capacity. The local dynamics have multiple steady states for some values of the carrying capacity that can lead to localized blooms as fluid moves across the regions with different properties. We show that for this model even small changes in the ratio of biological timescales relative to the flow timescales can greatly enhance or reduce the global plankton productivity. Thus, this may be a possible mechanism in which changes in horizontal mixing can trigger plankton blooms or cause regime shifts in some oceanic regions. Comparison between the spatially distributed model and Lagrangian simulations considering temporal fluctuations along fluid trajectories, demonstrates that small scale transport processes also play an important role in the development of plankton blooms with a significant influence on global biomass.

Detection of surface algal blooms using the newly developed algorithm surface algal bloom index SABI)

OpenAIRE

Alawadi, Fahad

2010-01-01

Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HA...

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

Science.gov (United States)

Monier, Adam; Pagarete, António; de Vargas, Colomban; Allen, Michael J.; Read, Betsy; Claverie, Jean-Michel; Ogata, Hiroyuki

2009-01-01

Interactions between viruses and phytoplankton, the main primary producers in the oceans, affect global biogeochemical cycles and climate. Recent studies are increasingly revealing possible cases of gene transfers between cyanobacteria and phages, which might have played significant roles in the evolution of cyanobacteria/phage systems. However, little has been documented about the occurrence of horizontal gene transfer in eukaryotic phytoplankton/virus systems. Here we report phylogenetic evidence for the transfer of seven genes involved in the sphingolipid biosynthesis pathway between the cosmopolitan eukaryotic microalga Emiliania huxleyi and its large DNA virus EhV. PCR assays indicate that these genes are prevalent in E. huxleyi and EhV strains isolated from different geographic locations. Patterns of protein and gene sequence conservation support that these genes are functional in both E. huxleyi and EhV. This is the first clear case of horizontal gene transfer of multiple functionally linked enzymes in a eukaryotic phytoplankton–virus system. We examine arguments for the possible direction of the gene transfer. The virus-to-host direction suggests the existence of ancient viruses that controlled the complex metabolic pathway in order to infect primitive eukaryotic cells. In contrast, the host-to-virus direction suggests that the serial acquisition of genes involved in the same metabolic pathway might have been a strategy for the ancestor of EhVs to stay ahead of their closest relatives in the great evolutionary race for survival. PMID:19451591

Coccolithophore assemblage response to Black Sea Water inflow into the North Aegean Sea (NE Mediterranean)

Science.gov (United States)

Karatsolis, B.-Th.; Triantaphyllou, M. V.; Dimiza, M. D.; Malinverno, E.; Lagaria, A.; Mara, P.; Archontikis, O.; Psarra, S.

2017-10-01

This study aims to presents the species composition of living coccolithophore communities in the NE Aegean Sea, investigating their spatial and temporal variations along a north-south transect in the area receiving the inflowing surface Black Sea Water (BSW) over the deeper Levantine Water (LW) layer. Coccolithophores in the area were relatively diverse and a total of 95 species over 3 sampling periods studied were recognized using Scanning Electron Microscope (SEM) techniques. R-mode hierarchical cluster analysis distinguished two coccolithophore Groups (I, IIa, IIb, IIc) with different ecological preferences. Emiliania huxleyi was the most abundant species of Group I, whereas Syracosphaera spp., Rhabdosphaera spp. and holococcolithophores were prevailing in the highly diversified Group II assemblages. Biometric analysis conducted on E. huxleyi coccoliths from Aegean water column and Black Sea sediment trap samples, indicated that during autumn, NE Aegean specimens in samples under BSW influence were featured by unimodal distribution concerning the coccolith relative tube width, with values similar to those provided by the Black Sea specimens. In early spring, coccoliths in the stations with increased BSW influx displayed a bimodal pattern of relative tube width with smaller values found mostly in the surface layers, while the distribution became again unimodal and dominated by larger values within the deeper LW layers. In the summer period, the typical LW holococcolithophore species (Group II) presented low cell numbers in the surface layer (huxleyi was almost absent in the NE Aegean during the summer sampling period.

Distribution and recurrence of phytoplankton blooms around South Georgia, Southern Ocean

Directory of Open Access Journals (Sweden)

I. Borrione

2013-01-01

Full Text Available South Georgia phytoplankton blooms are amongst the largest of the Southern Ocean and are associated with a rich ecosystem and strong atmospheric carbon drawdown. Both aspects depend on the intensity of blooms, but also on their regularity. Here we use data from 12 yr of SeaWiFS (Sea-viewing Wide Field-of-view Sensor ocean colour imagery and calculate the frequency of bloom occurrence (FBO to re-examine spatial and temporal bloom distributions. We find that upstream of the island and outside the borders of the Georgia Basin, blooms occurred in less than 4 out of the 12 yr (FBO < 4. In contrast, FBO was mostly greater than 8 downstream of the island, i.e., to the north and northwest, and in places equal to 12, indicating that blooms occurred every year. The typical bloom area, defined as the region where blooms occurred in at least 8 out of the 12 yr, covers the entire Georgia Basin and the northern shelf of the island. The time series of surface chlorophyll a (Chl a concentrations averaged over the typical bloom area shows that phytoplankton blooms occurred in every year between September 1997 and September 2010, and that Chl a values followed a clear seasonal cycle, with concentration peaks around December followed in many years by a second peak during late austral summer or early autumn, suggesting a bi-modal bloom pattern. The bloom regularity we describe here is in contrast with results of Park et al. (2010 who used a significantly different study area including regions that almost never exhibit bloom conditions.

A multiomics approach to study the microbiome response to phytoplankton blooms.

Science.gov (United States)

Song, Liyan

2017-06-01

Phytoplankton blooms are predictable features of marine and freshwater habitats. Despite a good knowledge base of the environmental factors controlling blooms, complex interactions between the bacterial and archaeal communities and phytoplankton bloom taxa are only now emerging. Here, the current research on bacterial community's structural and functional response to phytoplankton blooms is reviewed and discussed and further research is proposed. More attention should be paid on structure and function of autotrophic bacteria and archaea during phytoplankton blooms. A multiomics integration approach is needed to investigate bacterial and archaeal communities' diversity, metabolic diversity, and biogeochemical functions of microbial interactions during phytoplankton blooms.

Prevention of Cyanobacterial Blooms Using Nanosilica: A Biomineralization-Inspired Strategy.

Science.gov (United States)

Xiong, Wei; Tang, Yiming; Shao, Changyu; Zhao, Yueqi; Jin, Biao; Huang, Tingting; Miao, Ya'nan; Shu, Lei; Ma, Weimin; Xu, Xurong; Tang, Ruikang

2017-11-07

Cyanobacterial blooms represent a significant threat to global water resources because blooming cyanobacteria deplete oxygen and release cyanotoxins, which cause the mass death of aquatic organisms. In nature, a large biomass volume of cyanobacteria is a precondition for a bloom, and the cyanobacteria buoyancy is a key parameter for inducing the dense accumulation of cells on the water surface. Therefore, blooms will likely be curtailed if buoyancy is inhibited. Inspired by diatoms with naturally generated silica shells, we found that silica nanoparticles can be spontaneously incorporated onto cyanobacteria in the presence of poly(diallyldimethylammonium chloride), a cationic polyelectrolyte that can simulate biosilicification proteins. The resulting cyanobacteria-SiO 2 complexes can remain sedimentary in water. This strategy significantly inhibited the photoautotrophic growth of the cyanobacteria and decreased their biomass accumulation, which could effectively suppress harmful bloom events. Consequently, several of the adverse consequences of cyanobacteria blooms in water bodies, including oxygen consumption and microcystin release, were significantly alleviated. Based on the above results, we propose that the silica nanoparticle treatment has the potential for use as an efficient strategy for preventing cyanobacteria blooms.

Harmful Algal Blooms

Science.gov (United States)

Graham, Jennifer L.

2007-01-01

What are Harmful Algal Blooms (HABs)? Freshwater and marine harmful algal blooms (HABs) can occur anytime water use is impaired due to excessive accumulations of algae. HAB occurrence is affected by a complex set of physical, chemical, biological, hydrological, and meteorological conditions making it difficult to isolate specific causative environmental factors. Potential impairments include reduction in water quality, accumulation of malodorous scums in beach areas, algal production of toxins potent enough to poison both aquatic and terrestrial organisms, and algal production of taste-and-odor compounds that cause unpalatable drinking water and fish. HABs are a global problem, and toxic freshwater and (or) marine algae have been implicated in human and animal illness and death in over 45 countries worldwide and in at least 27 U.S. States (Yoo and others, 1995; Chorus and Bartram, 1999; Huisman and others, 2005).

The Blooming Anatomy Tool (BAT): A Discipline-Specific Rubric for Utilizing Bloom's Taxonomy in the Design and Evaluation of Assessments in the Anatomical Sciences

Science.gov (United States)

Thompson, Andrew R.; O'Loughlin, Valerie D.

2015-01-01

Bloom's taxonomy is a resource commonly used to assess the cognitive level associated with course assignments and examination questions. Although widely utilized in educational research, Bloom's taxonomy has received limited attention as an analytical tool in the anatomical sciences. Building on previous research, the Blooming Anatomy Tool (BAT)…

Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes

Science.gov (United States)

Shemi, Adva; Ben-Dor, Shifra; Vardi, Assaf

2015-01-01

Aquatic photosynthetic eukaryotes represent highly diverse groups (green, red, and chromalveolate algae) derived from multiple endosymbiosis events, covering a wide spectrum of the tree of life. They are responsible for about 50% of the global photosynthesis and serve as the foundation for oceanic and fresh water food webs. Although the ecophysiology and molecular ecology of some algal species are extensively studied, some basic aspects of algal cell biology are still underexplored. The recent wealth of genomic resources from algae has opened new frontiers to decipher the role of cell signaling pathways and their function in an ecological and biotechnological context. Here, we took a bioinformatic approach to explore the distribution and conservation of TOR and autophagy-related (ATG) proteins (Atg in yeast) in diverse algal groups. Our genomic analysis demonstrates conservation of TOR and ATG proteins in green algae. In contrast, in all 5 available red algal genomes, we could not detect the sequences that encode for any of the 17 core ATG proteins examined, albeit TOR and its interacting proteins are conserved. This intriguing data suggests that the autophagy pathway is not conserved in red algae as it is in the entire eukaryote domain. In contrast, chromalveolates, despite being derived from the red-plastid lineage, retain and express ATG genes, which raises a fundamental question regarding the acquisition of ATG genes during algal evolution. Among chromalveolates, Emiliania huxleyi (Haptophyta), a bloom-forming coccolithophore, possesses the most complete set of ATG genes, and may serve as a model organism to study autophagy in marine protists with great ecological significance. PMID:25915714

Byatt versus Bloom

DEFF Research Database (Denmark)

Børch, Marianne

2016-01-01

Antonia Byatt's Possession takes issue with Harold Bloom's famous claim that creation - including an author's creative reading of an intertext - entails a violent encounter. Byatt's book suggests a more positive Construction of the process by which tradition is transformed in transmission....

Aerial Images and Convolutional Neural Network for Cotton Bloom Detection.

Science.gov (United States)

Xu, Rui; Li, Changying; Paterson, Andrew H; Jiang, Yu; Sun, Shangpeng; Robertson, Jon S

2017-01-01

Monitoring flower development can provide useful information for production management, estimating yield and selecting specific genotypes of crops. The main goal of this study was to develop a methodology to detect and count cotton flowers, or blooms, using color images acquired by an unmanned aerial system. The aerial images were collected from two test fields in 4 days. A convolutional neural network (CNN) was designed and trained to detect cotton blooms in raw images, and their 3D locations were calculated using the dense point cloud constructed from the aerial images with the structure from motion method. The quality of the dense point cloud was analyzed and plots with poor quality were excluded from data analysis. A constrained clustering algorithm was developed to register the same bloom detected from different images based on the 3D location of the bloom. The accuracy and incompleteness of the dense point cloud were analyzed because they affected the accuracy of the 3D location of the blooms and thus the accuracy of the bloom registration result. The constrained clustering algorithm was validated using simulated data, showing good efficiency and accuracy. The bloom count from the proposed method was comparable with the number counted manually with an error of -4 to 3 blooms for the field with a single plant per plot. However, more plots were underestimated in the field with multiple plants per plot due to hidden blooms that were not captured by the aerial images. The proposed methodology provides a high-throughput method to continuously monitor the flowering progress of cotton.

Summer heatwaves promote blooms of harmful cyanobacteria

NARCIS (Netherlands)

K.D Joehnk; J. Huisman; J. Sharples; B.P. Sommeijer (Ben); P.M. Visser (Petra); J.M. Stroom

2008-01-01

htmlabstractDense surface blooms of toxic cyanobacteria in eutrophic lakes may lead to mass mortalities of fish and birds, and provide a serious health threat for cattle, pets, and humans. It has been argued that global warming may increase the incidence of harmful algal blooms. Here, we report on a

Summer heatwaves promote blooms of harmful cyanobacteria

NARCIS (Netherlands)

Jöhnk, K.D.; Huisman, J.; Sharples, J.; Sommeijer, B.; Visser, P.M.; Stroom, J.M.

2008-01-01

Dense surface blooms of toxic cyanobacteria in eutrophic lakes may lead to mass mortalities of fish and birds, and provide a serious health threat for cattle, pets, and humans. It has been argued that global warming may increase the incidence of harmful algal blooms. Here, we report on a lake

Phytoplankton blooms in estuarine and coastal waters: Seasonal patterns and key species

Science.gov (United States)

Carstensen, Jacob; Klais, Riina; Cloern, James E.

2015-01-01

Phytoplankton blooms are dynamic phenomena of great importance to the functioning of estuarine and coastal ecosystems. We analysed a unique (large) collection of phytoplankton monitoring data covering 86 coastal sites distributed over eight regions in North America and Europe, with the aim of investigating common patterns in the seasonal timing and species composition of the blooms. The spring bloom was the most common seasonal pattern across all regions, typically occurring early (February–March) at lower latitudes and later (April–May) at higher latitudes. Bloom frequency, defined as the probability of unusually high biomass, ranged from 5 to 35% between sites and followed no consistent patterns across gradients of latitude, temperature, salinity, water depth, stratification, tidal amplitude or nutrient concentrations. Blooms were mostly dominated by a single species, typically diatoms (58% of the blooms) and dinoflagellates (19%). Diatom-dominated spring blooms were a common feature in most systems, although dinoflagellate spring blooms were also observed in the Baltic Sea. Blooms dominated by chlorophytes and cyanobacteria were only common in low salinity waters and occurred mostly at higher temperatures. Key bloom species across the eight regions included the diatoms Cerataulina pelagica and Dactyliosolen fragilissimus and dinoflagellates Heterocapsa triquetra and Prorocentrum cordatum. Other frequent bloom-forming taxa were diatom genera Chaetoceros, Coscinodiscus, Skeletonema, and Thalassiosira. Our meta-analysis shows that these 86 estuarine-coastal sites function as diatom-producing systems, the timing of that production varies widely, and that bloom frequency is not associated with environmental factors measured in monitoring programs. We end with a perspective on the limitations of conclusions derived from meta-analyses of phytoplankton time series, and the grand challenges remaining to understand the wide range of bloom patterns and

Deep-Learning-Based Approach for Prediction of Algal Blooms

Directory of Open Access Journals (Sweden)

Feng Zhang

2016-10-01

Full Text Available Algal blooms have recently become a critical global environmental concern which might put economic development and sustainability at risk. However, the accurate prediction of algal blooms remains a challenging scientific problem. In this study, a novel prediction approach for algal blooms based on deep learning is presented—a powerful tool to represent and predict highly dynamic and complex phenomena. The proposed approach constructs a five-layered model to extract detailed relationships between the density of phytoplankton cells and various environmental parameters. The algal blooms can be predicted by the phytoplankton density obtained from the output layer. A case study is conducted in coastal waters of East China using both our model and a traditional back-propagation neural network for comparison. The results show that the deep-learning-based model yields better generalization and greater accuracy in predicting algal blooms than a traditional shallow neural network does.

Effects of fertilizers used in agricultural fields on algal blooms

Science.gov (United States)

Chakraborty, Subhendu; Tiwari, P. K.; Sasmal, S. K.; Misra, A. K.; Chattopadhyay, Joydev

2017-06-01

The increasing occurrence of algal blooms and their negative ecological impacts have led to intensified monitoring activities. This needs the proper identification of the most responsible factor/factors for the bloom formation. However, in natural systems, algal blooms result from a combination of factors and from observation it is difficult to identify the most important one. In the present paper, using a mathematical model we compare the effects of three human induced factors (fertilizer input in agricultural field, eutrophication due to other sources than fertilizers, and overfishing) on the bloom dynamics and DO level. By applying a sophisticated sensitivity analysis technique, we found that the increasing use of fertilizers in agricultural field causes more rapid algal growth and decreases DO level much faster than eutrophication from other sources and overfishing. We also look at the mechanisms how fertilizer input rate affects the algal bloom dynamics and DO level. The model can be helpful for the policy makers in determining the influential factors responsible for the bloom formation.

Bloom's Taxonomy: Improving Assessment and Teaching-Learning Process

Science.gov (United States)

Chandio, Muhammad Tufail; Pandhiani, Saima Murtaza; Iqbal, Rabia

2016-01-01

This research study critically analyzes the scope and contribution of Bloom's Taxonomy in both assessment and teaching-learning process. Bloom's Taxonomy consists of six stages, namely; remembering, understanding, applying, analyzing, evaluating and creating and moves from lower degree to the higher degree. The study applies Bloom's Taxonomy to…

Predicting potentially toxigenic Pseudo-nitzschia blooms in the Chesapeake Bay

Science.gov (United States)

Anderson, Clarissa R.; Sapiano, Mathew R. P.; Prasad, M. Bala Krishna; Long, Wen; Tango, Peter J.; Brown, Christopher W.; Murtugudde, Raghu

2010-11-01

Harmful algal blooms are now recognized as a significant threat to the Chesapeake Bay as they can severely compromise the economic viability of important recreational and commercial fisheries in the largest estuary of the United States. This study describes the development of empirical models for the potentially domoic acid-producing Pseudo-nitzschia species complex present in the Bay, developed from a 22-year time series of cell abundance and concurrent measurements of hydrographic and chemical properties. Using a logistic Generalized Linear Model (GLM) approach, model parameters and performance were compared over a range of Pseudo-nitzschia bloom thresholds relevant to toxin production by different species. Small-threshold blooms (≥10 cells mL -1) are explained by time of year, location, and variability in surface values of phosphate, temperature, nitrate plus nitrite, and freshwater discharge. Medium- (100 cells mL -1) to large- threshold (1000 cells mL -1) blooms are further explained by salinity, silicic acid, dissolved organic carbon, and light attenuation (Secchi) depth. These predictors are similar to other models for Pseudo-nitzschia blooms on the west coast, suggesting commonalities across ecosystems. Hindcasts of bloom probabilities at a 19% bloom prediction point yield a Heidke Skill Score of ~53%, a Probability of Detection ˜ 75%, a False Alarm Ratio of ˜ 52%, and a Probability of False Detection ˜9%. The implication of possible future changes in Baywide nutrient stoichiometry on Pseudo-nitzschia blooms is discussed.

A major seasonal phytoplankton bloom in the Madagascar Basin

Science.gov (United States)

Longhurst, Alan

2001-11-01

A hitherto-unnoticed phytoplankton bloom, of dimension 3000×1500 km, occupies the Madagascar Basin in late austral summer, being a prominent feature in SeaWiFS images. A first-order interpretation of the bloom mechanism invokes the seasonal deepening of the mixed layer within a strong mesoscale eddy-field and the consequent entrainment of nutrients into the photic zone. Features of the bloom correspond closely and appropriately with features of the eddy-field as observed by TOPEX-POSEIDON sea level anomalies. The bloom failed to develop in 1998, the second year of a two-year ENSO episode, when anomalously weak Southeast Trades will have failed to deepen the mixed layer as in other years.

Distance Sensitive Bloom Filters Without False Negatives

DEFF Research Database (Denmark)

Goswami, Mayank; Pagh, Rasmus; Silvestri, Francesco

2017-01-01

A Bloom filter is a widely used data-structure for representing a set S and answering queries of the form “Is x in S?”. By allowing some false positive answers (saying ‘yes’ when the answer is in fact ‘no’) Bloom filters use space significantly below what is required for storing S. In the distanc...

Harmful Freshwater Algal Blooms, With an Emphasis on Cyanobacteria

Directory of Open Access Journals (Sweden)

Hans W. Paerl

2001-01-01

Full Text Available Suspended algae, or phytoplankton, are the prime source of organic matter supporting food webs in freshwater ecosystems. Phytoplankton productivity is reliant on adequate nutrient supplies; however, increasing rates of nutrient supply, much of it manmade, fuels accelerating primary production or eutrophication. An obvious and problematic symptom of eutrophication is rapid growth and accumulations of phytoplankton, leading to discoloration of affected waters. These events are termed blooms. Blooms are a prime agent of water quality deterioration, including foul odors and tastes, deoxygenation of bottom waters (hypoxia and anoxia, toxicity, fish kills, and food web alterations. Toxins produced by blooms can adversely affect animal (including human health in waters used for recreational and drinking purposes. Numerous freshwater genera within the diverse phyla comprising the phytoplankton are capable of forming blooms; however, the blue-green algae (or cyanobacteria are the most notorious bloom formers. This is especially true for harmful toxic, surface-dwelling, scum-forming genera (e.g., Anabaena, Aphanizomenon, Nodularia, Microcystis and some subsurface bloom-formers (Cylindrospermopsis, Oscillatoria that are adept at exploiting nutrient-enriched conditions. They thrive in highly productive waters by being able to rapidly migrate between radiance-rich surface waters and nutrient-rich bottom waters. Furthermore, many harmful species are tolerant of extreme environmental conditions, including very high light levels, high temperatures, various degrees of desiccation, and periodic nutrient deprivation. Some of the most noxious cyanobacterial bloom genera (e.g., Anabaena, Aphanizomenon, Cylindrospermopsis, Nodularia are capable of fixing atmospheric nitrogen (N2, enabling them to periodically dominate under nitrogen-limited conditions. Cyanobacteria produce a range of organic compounds, including those that are toxic to higher-ranked consumers, from

Eddy-driven stratification initiates North Atlantic spring phytoplankton blooms.

Science.gov (United States)

Mahadevan, Amala; D'Asaro, Eric; Lee, Craig; Perry, Mary Jane

2012-07-06

Springtime phytoplankton blooms photosynthetically fix carbon and export it from the surface ocean at globally important rates. These blooms are triggered by increased light exposure of the phytoplankton due to both seasonal light increase and the development of a near-surface vertical density gradient (stratification) that inhibits vertical mixing of the phytoplankton. Classically and in current climate models, that stratification is ascribed to a springtime warming of the sea surface. Here, using observations from the subpolar North Atlantic and a three-dimensional biophysical model, we show that the initial stratification and resulting bloom are instead caused by eddy-driven slumping of the basin-scale north-south density gradient, resulting in a patchy bloom beginning 20 to 30 days earlier than would occur by warming.

Climate Change and Algal Blooms =

Science.gov (United States)

Lin, Shengpan

Algal blooms are new emerging hazards that have had important social impacts in recent years. However, it was not very clear whether future climate change causing warming waters and stronger storm events would exacerbate the algal bloom problem. The goal of this dissertation was to evaluate the sensitivity of algal biomass to climate change in the continental United States. Long-term large-scale observations of algal biomass in inland lakes are challenging, but are necessary to relate climate change to algal blooms. To get observations at this scale, this dissertation applied machine-learning algorithms including boosted regression trees (BRT) in remote sensing of chlorophyll-a with Landsat TM/ETM+. The results show that the BRT algorithm improved model accuracy by 15%, compared to traditional linear regression. The remote sensing model explained 46% of the total variance of the ground-measured chlorophyll- a in the first National Lake Assessment conducted by the US Environmental Protection Agency. That accuracy was ecologically meaningful to study climate change impacts on algal blooms. Moreover, the BRT algorithm for chlorophyll- a would not have systematic bias that is introduced by sediments and colored dissolved organic matter, both of which might change concurrently with climate change and algal blooms. This dissertation shows that the existing atmospheric corrections for Landsat TM/ETM+ imagery might not be good enough to improve the remote sensing of chlorophyll-a in inland lakes. After deriving long-term algal biomass estimates from Landsat TM/ETM+, time series analysis was used to study the relations of climate change and algal biomass in four Missouri reservoirs. The results show that neither temperature nor precipitation was the only factor that controlled temporal variation of algal biomass. Different reservoirs, even different zones within the same reservoir, responded differently to temperature and precipitation changes. These findings were further

Rethinking Bloom's Taxonomy: Implications for Testing and Assessment.

Science.gov (United States)

Anderson, Lorin W.

This paper describes a work in progress on a second edition of "Taxonomy of Educational Objectives, The Classification of Educational Goals, Handbook I: Cognitive Domain," also known as "Bloom's Taxonomy" (B. Bloom and others, Eds., 1956). The new edition will be grounded in the collective wisdom of the original…

Harmful algal bloom smart device application: using image analysis and machine learning techniques for early classification of harmful algal blooms (SETAC presentation)

Science.gov (United States)

Reports of toxic cyanobacterial blooms, also known as Harmful Algal Blooms (HABS) have increased drastically in recent years. HABS impact human health from causing mild allergies to liver damage and death. The Ecological Stewardship Institute (ESI) at Northern Kentucky Universi...

Tropical cyanobacterial blooms: a review of prevalence, problem taxa, toxins and influencing environmental factors

Directory of Open Access Journals (Sweden)

Maxine A.D. Mowe

2014-12-01

Full Text Available Toxic cyanobacterial blooms are a major issue in freshwater systems in many countries. The potentially toxic species and their ecological causes are likely to be different in tropical zones from those in temperate water bodies; however, studies on tropical toxic cyanobacterial blooms are sporadic and currently there is no global synthesis. In this review, we examined published information on tropical cyanobacterial bloom occurrence and toxin production to investigate patterns in their growth and distribution. Microcystis was the most frequently occurring bloom genus throughout tropical Asia, Africa and Central America, while Cylindrospermopsis and Anabaena blooms occurred in various locations in tropical Australia, America and Africa. Microcystis blooms were more prevalent during the wet season while Cylindrospermopsis blooms were more prevalent during the dry period. Microcystin was the most encountered toxin throughout the tropics. A meta-analysis of tropical cyanobacterial blooms showed that Microcystis blooms were more associated with higher total nitrogen concentrations, while Cylindrospermopsis blooms were more associated with higher maximum temperatures. Meta-analysis also showed a positive linear relationship between levels of microcystin and N:P (nitrate:phosphate ratio. Tropical African Microcystis blooms were found to have the lowest microcystin levels in relation to biomass and N:P (nitrate:phosphate compared to tropical Asian, Australian and American blooms. There was also no significant correlation between microcystin concentration and cell concentration for tropical African blooms as opposed to tropical Asian and American blooms. Our review illustrates that some cyanobacteria and toxins are more prevalent in tropical areas. While some tropical countries have considerable information regarding toxic blooms, others have few or no reported studies. 

Optical detection of Prorocentrum donghaiense blooms based on multispectral reflectance

Institute of Scientific and Technical Information of China (English)

TAO Bangyi; PAN Delu; MAO Zhihua; SHEN Yuzhang; ZHU Qiankun; CHEN Jianyu

2013-01-01

Prorocentrum donghaiense is one of the most common red tide causative dinoflagellates in the Changjiang (Yangtze) River Estuary and the adjacent area of the East China Sea. It causes large-scale blooms in late spring and early summer that lead to widespread ecologic and economic damage. A means for distinguish-ing dinoflagellate blooms from diatom (Skeletonema costatum) blooms is desired. On the basis of measure-ments of remote sensing reflectance [Rrs(λ)] and inherent optical parameters, the potential of using a mul-tispectral approach is assessed for discriminating the algal blooms due to P. donghaiense from those due to S. costatum. The behavior of two reflectance ratios [R1 =Rrs(560)/Rrs(532) and R2 =Rrs(708)/Rrs(665)], suggests that differentiation of P. donghaiense blooms from diatom bloom types is possible from the current band setup of ocean color sensors. It is found that there are two reflectance ratio regimes that indicate a bloom is dominated by P. donghaiense: (1) R1 >1.55 and R2 1.75 and R2 ?1.0. Various sensitivity analyses are conducted to investigate the effects of the variation in varying levels of chlorophyll concentration and colored dissolved organic matter (CDOM) as well as changes in the backscattering ratio (bbp/bp) on the efficacy of this multispectral approach. Results indicate that the intensity and inherent op-tical properties of the algal species explain much of the behavior of the two ratios. Although backscattering influences the amplitude of Rrs(λ), especially in the 530 and 560 nm bands, the discrimination between P. donghaiense and diatoms is not significantly affected by the variation of bbp/bp. Since a CDOM(440) in coastal areas of the ECS is typically lower than 1.0 m−1 in most situations, the presence of CDOM does not interfere with this discrimination, even as SCDOM varies from 0.01 to 0.026 nm−1. Despite all of these effects, the dis-crimination of P. donghaiense blooms from diatom blooms based on multispectral

Hydrodynamic control of microphytoplankton bloom in a coastal sea

Indian Academy of Sciences (India)

Hydrodynamic control of microphytoplankton bloom in a coastal sea ... many times more than what could be accounted for by solar insolation and nutrient levels. ... and stable water column and weak winds left undisturbed, the transient bloom.

An Artificial Neural Network Based Short-term Dynamic Prediction of Algae Bloom

Directory of Open Access Journals (Sweden)

Yao Junyang

2014-06-01

Full Text Available This paper proposes a method of short-term prediction of algae bloom based on artificial neural network. Firstly, principal component analysis is applied to water environmental factors in algae bloom raceway ponds to get main factors that influence the formation of algae blooms. Then, a model of short-term dynamic prediction based on neural network is built with the current chlorophyll_a values as input and the chlorophyll_a values in the next moment as output to realize short-term dynamic prediction of algae bloom. Simulation results show that the model can realize short-term prediction of algae bloom effectively.

Consortial brown tide - picocyanobacteria blooms in Guantánamo Bay, Cuba.

Science.gov (United States)

Hall, Nathan S; Litaker, R Wayne; Kenworthy, W Judson; Vandersea, Mark W; Sunda, William G; Reid, James P; Slone, Daniel H; Butler, Susan

2018-03-01

A brown tide bloom of Aureoumbra lagunensis developed in Guantánamo Bay, Cuba during a period of drought in 2013 that followed heavy winds and rainfall from Hurricane Sandy in late October 2012. Based on satellite images and water turbidity measurements, the bloom appeared to initiate in January 2013. The causative species (A. lagunensis) was confirmed by microscopic observation, and pigment and genetic analyses of bloom samples collected on May 28 of that year. During that time, A. lagunensis reached concentrations of 900,000 cells ml -1 (28 ppm by biovolume) in the middle portion of the Bay. Samples could not be collected from the northern (Cuban) half of the Bay because of political considerations. Subsequent sampling of the southern half of the Bay in November 2013, April 2014, and October 2014 showed persistent lower concentrations of A. lagunensis, with dominance shifting to the cyanobacterium Synechococcus (up to 33 ppm in April), an algal group that comprised a minor bloom component on May 28. Thus, unlike the brown tide bloom in Laguna Madre, which lasted 8 years, the bloom in Guantánamo Bay was short-lived, much like recent blooms in the Indian River, Florida. Although hypersaline conditions have been linked to brown tide development in the lagoons of Texas and Florida, observed euhaline conditions in Guantánamo Bay (salinity 35-36) indicate that strong hypersalinity is not a requirement for A. lagunensis bloom formation. Microzooplankton biomass dominated by ciliates was high during the observed peak of the brown tide, and ciliate abundance was high compared to other systems not impacted by brown tide. Preferential grazing by zooplankton on non-brown tide species, as shown in A. lagunensis blooms in Texas and Florida, may have been a factor in the development of the Cuban brown tide bloom. However, subsequent selection of microzooplankton capable of utilizing A. lagunensis as a primary food source may have contributed to the short-lived duration

Nitrogen utilization during spring phytoplankton bloom development in the southeast Bering Sea

International Nuclear Information System (INIS)

Sambrotto, R.N.

1983-01-01

Interactions beween a high latitude, continental shelf, spring phytoplankton bloom and water column physics and chemistry were studied using 15 N measured rates of nitrogen uptake. Peak bloom conditions commenced when the mixed layer shallowed and minimized respirational losses. Integrative light-mixing growth models were accurate during early bloom stages. An advection-diffusion model associated peak bloom nitrate uptake with pycnocline mixing rates of 2.1 m d -1 in an 18 m mixed layer. Maximum nitrogen specific uptake rates (hr -1 ), unlike those of carbon, coincided with peak bloom conditions. Although species compositions among peak bloom periods were similar, particulate C/N ratios were not. Apparently, both intercellular factors and prevailing mixing conditions influence specific uptake rates and cell composition. A large proportion of new (nitrate) to total productivity was associated with the dominance of the early bloom forming diatoms in the mixed layer. In the absence of these net plankton the residual nanoplankton dominated community exhibited a greater dependence on regenerated nitrogen. Nitrate uptake averaged 700 mg-at m -2 during the spring bloom and 1 g-at m -2 year -1 . The yearly f factor was 0.40. Nitrogen uptake based carbon productivity was 188 g C m -2 year -1

The plankton community on Sukkertop and Fylla Banks off West Greenland during a spring bloom and post-bloom period: Hydrography, phytoplankton and protozooplankton

DEFF Research Database (Denmark)

Poulsen, Louise K.; Reuss, N.

2002-01-01

The plankton community structure was investigated on Sukkertop and Fylla Banks off West Greenland during the spring bloom in May 2000 and the post-bloom period in June 1999. In May a small change in density, clearly illustrated by the profile of potential energy, was sufficient to support a spring...... the phytoplankton community. Heterotrophic biomass was low (5 +/- 1 mg C m(-3)) and an important part was comprised by heterotrophic nanoflagellates (24 +/- 1%). Protozooplankters (heterotrophic dinoflagellates and ciliates) were important grazers of the phytoplankton community in the post-bloom period (estimated...

A review of carbon blooms on JET and TFTR

International Nuclear Information System (INIS)

Ulrickson, M.

1990-01-01

Operation of JET and TFTR at high auxiliary heating power has resulted in the occurrence of phenomena called carbon blooms. The carbon bloom is characterized by a rapid increases in the emission of carbon spectral lines, the Z eff , the radiated power, and the plasma density. There is also a concurrent decrease in the neutron emission rate, stored energy, and plasma pressure. On both machines the source of the carbon is observed to be at localized (both toroidally and polidally) hot spots on either the divertor plates or limiters. The localized hot spots are due to one or more of the following: disruption damage spots, misalignment of tiles, and/or exposed edges of tiles. The occurrence of carbon blooms limits the performance of the highest input power plasmas on both machines. This paper reviews the carbon bloom phenomenon as it occurs on both JET and TFTR. (orig.)

Health risk assessment standards of cyanobacteria bloom occurrence in bathing sites

Directory of Open Access Journals (Sweden)

Agnieszka Stankiewicz

2011-03-01

Full Text Available Threat for human health appears during a massive cyanobacteria bloom in potable water used for human consumption or in basins used for recreational purposes. General health risk assessment standards and preventive measures to be taken by sanitation service were presented in scope of: – evaluation of cyanobacteria bloom occurrence in bathing sites / water bodies, – procedures in case of cyanobacteria bloom, including health risk assessment and decision making process to protect users’ health at bathing sites, – preventive measures, to be taken in case of cyanobacteria bloom occurrence in bathing sites and basins, where bathing sites are located.

Phytoplankton bloom and subpolar gyre induced dynamics in the North Atlantic

DEFF Research Database (Denmark)

Ferreira, Ana Sofia; Hátún, H.; Counillon, F.

Several hypotheses have been promoted for phytoplankton bloom onset in the North Atlantic. First we show that the bloom dynamics in the northeastern corner stand out from the rest of the subpolar Atlantic, and thus warrants focused attention. We hypothesized that, for this region, late and weak...... blooms are expected in years of a strong subpolar gyre, i.e. strong atmospheric forcing, and cold and low saline conditions. We apply novel phenology algorithms to satellite ocean colour data, and analyse the outcome together with the subpolar gyre index. We find that the relationship between the bloom...

Selenium Utilization Strategy by Microalgae

Directory of Open Access Journals (Sweden)

Hiroya Araie

2009-11-01

Full Text Available The diversity of selenoproteins raises the question of why so many life forms require selenium. Selenoproteins are found in bacteria, archaea, and many eukaryotes. In photosynthetic microorganisms, the essential requirement for selenium has been reported in 33 species belonging to six phyla, although its biochemical significance is still unclear. According to genome databases, 20 species are defined as selenoprotein-producing organisms, including five photosynthetic organisms. In a marine coccolithophorid, Emiliania huxleyi (Haptophyta, we recently found unique characteristics of selenium utilization and novel selenoproteins using 75Se-tracer experiments. In E. huxleyi, selenite, not selenate, is the main substrate used and its uptake is driven by an ATP-dependent highaffinity, active transport system. Selenite is immediately metabolized to low-molecular mass compounds and partly converted to at least six selenoproteins, named EhSEP1–6. The most (EhSEP2 and second-most abundant selenoproteins (EhSEP1 are disulfide isomerase (PDI homologous protein and thioredoxin reductase (TR 1, respectively. Involvement of selenium in PDI is unique in this organism, while TR1 is also found in other organisms. In this review, we summarize physiological, biochemical, and molecular aspects of selenium utilization by microalgae and discuss their strategy of selenium utilization.

Peculiarities of the Woody Plants Re-Bloom

OpenAIRE

Opalko Olga Anatolievna; Opalko Anatoly Ivanovich

2015-01-01

The data of literary sources concerning the bloom of angiosperm plants and deviation in the development of a flower and inflorescence, in particular untimely flowering, was generalized; our observation results of some peculiarities of re-bloom of woody plants in the National Dendrological Park “Sofiyivka” of NAS of Ukraine (NDP “Sofiyivka”) were discussed. The flowering process was formed during a long-term evolution of a propagation system of angiosperm plants as a basis of fertilization and...

Salmon mortalities associated with a bloom of Alexandrium ...

African Journals Online (AJOL)

Blue mussels Mytilus edulis analysed from areas affected by the bloom reached levels of 18 000ìg STX equivalents 100g–1 of tissue. As a result of the salmon mortalities, a project was initiated to establish a monitoring approach for harmful algal blooms to provide an early warning of potential events and to act as a tool for ...

The antibiotic resistome of free-living and particle-attached bacteria under a reservoir cyanobacterial bloom.

Science.gov (United States)

Guo, Yunyan; Liu, Min; Liu, Lemian; Liu, Xuan; Chen, Huihuang; Yang, Jun

2018-05-04

In freshwater systems, both antibiotic resistance genes (ARGs) and cyanobacterial blooms attract global public health concern. Cyanobacterial blooms can greatly impact bacterial taxonomic communities, but very little is known about the influence of the blooms on antibiotic resistance functional community. In this study, the ARGs in both free-living (FL) and particle-attached (PA) bacteria under bloom and non-bloom conditions were simultaneously investigated in a subtropical reservoir using high-throughput approaches. In total, 145 ARGs and 9 mobile genetic elements (MGEs) were detected. The most diverse and dominant of which (68.93%) were multidrug resistance genes and efflux pump mechanism. The richness of ARGs in both FL and PA bacteria was significantly lower during the bloom period compared with non-bloom period. The abundance of ARGs in FL bacteria was significantly lower under bloom condition than in the non-bloom period, but the abundance of ARGs in PA bacteria stayed constant. More importantly, the resistant functional community in PA bacteria was more strongly influenced by the cyanobacterial bloom than in the FL bacteria, although >96% ARGs were shared in both FL and PA bacteria or both bloom and non-bloom periods. We also compared the community compositions between taxonomy and function, and found antibiotic resistant communities were highly variable and exhibited lower similarity between bloom and non-bloom periods than seen in the taxonomic composition, with an exception of FL bacteria. Altogether, cyanobacterial blooms appear to have stronger inhibitory effect on ARG abundance in FL bacteria, and stronger influence on antibiotic resistant community composition in PA bacteria. Our results further suggested that both neutral and selective processes interactively affected the ARG composition dynamics of the FL and PA bacteria. However, the antibiotic resistant community of FL bacteria exhibited a higher level of temporal stochasticity following the bloom

Georges Bank: a leaky incubator of Alexandrium fundyense blooms.

Science.gov (United States)

McGillicuddy, D J; Townsend, D W; Keafer, B A; Thomas, M A; Anderson, D M

2014-05-01

A series of oceanographic surveys on Georges Bank document variability of populations of the toxic dinoflagellate Alexandrium fundyense on time scales ranging from synoptic to seasonal to interannual. Blooms of A. fundyense on Georges Bank can reach concentrations on the order of 10 4 cells l -1 , and are generally bank-wide in extent. Georges Bank populations of A. fundyense appear to be quasi-independent of those in the adjacent coastal Gulf of Maine, insofar as they occupy a hydrographic niche that is colder and saltier than their coastal counterparts. In contrast to coastal populations that rely on abundant resting cysts for bloom initiation, very few cysts are present in the sediments on Georges Bank. Bloom dynamics must therefore be largely controlled by the balance between growth and mortality processes, which are at present largely unknown for this population. Based on correlations between cell abundance and nutrient distributions, ammonium appears to be an important source of nitrogen for A. fundyense blooms on Georges Bank.

Detection of macroalgae blooms by complex SAR imagery

International Nuclear Information System (INIS)

Shen, Hui; Perrie, William; Liu, Qingrong; He, Yijun

2014-01-01

Highlights: • Complex SAR imagery enables better recognition of macroalgae patches. • Combination of different information in SAR matrix forms new index factors. • Proposed index factors contribute to unsupervised recognition of macroalgae. -- Abstract: Increased frequency and enhanced damage to the marine environment and to human society caused by green macroalgae blooms demand improved high-resolution early detection methods. Conventional satellite remote sensing methods via spectra radiometers do not work in cloud-covered areas, and therefore cannot meet these demands for operational applications. We present a methodology for green macroalgae bloom detection based on RADARSAT-2 synthetic aperture radar (SAR) images. Green macroalgae patches exhibit different polarimetric characteristics compared to the open ocean surface, in both the amplitude and phase domains of SAR-measured complex radar backscatter returns. In this study, new index factors are defined which have opposite signs in green macroalgae-covered areas, compared to the open water surface. These index factors enable unsupervised detection from SAR images, providing a high-resolution new tool for detection of green macroalgae blooms, which can potentially contribute to a better understanding of the mechanisms related to outbreaks of green macroalgae blooms in coastal areas throughout the world ocean

Peran Pt.bloom Agro Dalam Implementasi Prinsip Fair Trade Di Indonesia (Studi Kasus: Ekspor Beras Organik Pt.bloom Agro Ke Mancanegara Tahun 2008-2015)

OpenAIRE

Yealta, Den; Ikhsani, Munadia

2016-01-01

This research describes the role of PT.Bloom Agro to do Fair Teade implementation in Indonesia in the case study is the export of PT.Bloom Agros€™s organic rice to foreign country. Fair Trade is the kind of Alternatives trade which populer as donatian movement in 1940. But now in the globalitation era that causes of free trade, fair trade is more popular as alternatives trade movement and as a certification to mark a product has fair tarde guarantee. And in Indonesia PT.Bloom Agro which an ex...

Optical researches for cyanobacteria bloom monitoring in Curonian Lagoon

Science.gov (United States)

Shirshin, Evgeny A.; Budylin, Gleb B.; Yakimov, Boris P.; Voloshina, Olga V.; Karabashev, Genrik S.; Evdoshenko, Marina A.; Fadeev, Victor V.

2016-04-01

Cyanobacteria bloom is a great ecological problem of Curonian Lagoon and Baltic Sea. The development of novel methods for the on-line control of cyanobacteria concentration and, moreover, for prediction of bloom spreading is of interest for monitoring the state of ecosystem. Here, we report the results of the joint application of hyperspectral measurements and remote sensing of Curonian Lagoon in July 2015 aimed at the assessment of cyanobacteria communities. We show that hyperspectral data allow on-line detection and qualitative estimation of cyanobacteria concentration, while the remote sensing data indicate the possibility of cyanobacteria bloom detection using the spectral features of upwelling irradiation.

Algal Bloom: Boon or Bane?

Digital Repository Service at National Institute of Oceanography (India)

LokaBharathi, P.A.

Algal blooms occur in response to nutrient deplete or replete conditions. Nitrogen fixing forms proliferate under oligotrophic conditions when nutrient levels are low. Replete conditions in response to upwelling creates the most biologically...

Consortial brown tide − picocyanobacteria blooms in Guantánamo Bay, Cuba

Science.gov (United States)

Hall, Nathan S; Litaker, R. Wayne; Kenworthy, W. Judson; Vandersea, Mark W.; Sunda, William G.; Reid, James P.; Slone, Daniel H.; Butler, Susan M.

2018-01-01

A brown tide bloom of Aureoumbra lagunensis developed in Guantánamo Bay, Cuba during a period of drought in 2013 that followed heavy winds and rainfall from Hurricane Sandy in late October 2012. Based on satellite images and water turbidity measurements, the bloom appeared to initiate in January 2013. The causative species (A. lagunensis) was confirmed by microscopic observation, and pigment and genetic analyses of bloom samples collected on May 28 of that year. During that time, A. lagunensis reached concentrations of 900,000 cells ml−1 (28 ppm by biovolume) in the middle portion of the Bay. Samples could not be collected from the northern (Cuban) half of the Bay because of political considerations. Subsequent sampling of the southern half of the Bay in November 2013, April 2014, and October 2014 showed persistent lower concentrations of A. lagunensis, with dominance shifting to the cyanobacterium Synechococcus (up to 33 ppm in April), an algal group that comprised a minor bloom component on May 28. Thus, unlike the brown tide bloom in Laguna Madre, which lasted 8 years, the bloom in Guantánamo Bay was short-lived, much like recent blooms in the Indian River, Florida. Although hypersaline conditions have been linked to brown tide development in the lagoons of Texas and Florida, observed euhaline conditions in Guantánamo Bay (salinity 35–36) indicate that strong hypersalinity is not a requirement for A. lagunensis bloom formation. Microzooplankton biomass dominated by ciliates was high during the observed peak of the brown tide, and ciliate abundance was high compared to other systems not impacted by brown tide. Preferential grazing by zooplankton on non-brown tide species, as shown in A. lagunensis blooms in Texas and Florida, may have been a factor in the development of the Cuban brown tide bloom. However, subsequent selection of microzooplankton capable of utilizing A. lagunensis as a primary food source may have contributed to the

Nannofossils in upper quaternary bottom sediments of back-arc basins in the southwestern Pacific

Science.gov (United States)

Dmitrenko, O. B.

2015-05-01

The analysis of calcareous nannoplankton assemblages in bottom sediments sampled during Cruise 21 of the R/V Akademik Mstislav Keldysh in three areas located in back-arc basins of the southwestern Pacific (western Woodlark in the Solomon Sea, Manus in the Bismarck Sea, Central Lau) reveal that they belong to the Emiliania huxleyi Acme Zone, the most detailed one in the Gartner's scale of 1977. The content of coccoliths and their taxonomic composition indicate warm subtropical-tropical conditions. Long cores demonstrate a decrease in species diversity reflecting the transition from the cold late Pleistocene to the Holocene. The changes in species diversity and presence/absence of thermophilic representatives indicate transformation of depositional environments with unstable conditions in the water column and bottom layer, seismic activity, and widely developed processes of sediment redistribution and reworking.

Photochemical Production and Behavior of Hydroperoxyacids in Heterotrophic Bacteria Attached to Senescent Phytoplanktonic Cells

Directory of Open Access Journals (Sweden)

Frédéric Vaultier

2013-06-01

Full Text Available The photooxidation of cellular monounsaturated fatty acids was investigated in senescent phytoplanktonic cells (Emiliania huxleyi and in their attached bacteria under laboratory controlled conditions. Our results indicated that UV-visible irradiation of phytodetritus induced the photooxidation of oleic (produced by phytoplankton and bacteria and cis-vaccenic (specifically produced by bacteria acids. These experiments confirmed the involvement of a substantial singlet oxygen transfer from senescent phytoplanktonic cells to attached bacteria, and revealed a significant correlation between the concentration of chlorophyll, a photosensitizer, in the phytodetritus and the photodegradation state of bacteria. Hydroperoxyacids (fatty acid photoproducts appeared to be quickly degraded to ketoacids and hydroxyacids in bacteria and in phytoplanktonic cells. This degradation involves homolytic cleavage (most likely induced by UV and/or transition metal ions and peroxygenase activity (yielding epoxy acids.

Succession and fate of the spring diatom bloom in Disko Bay, western Greenland

DEFF Research Database (Denmark)

Dünweber, Michael; Swalethorp, Rasmus; Kjellerup, Sanne

2010-01-01

Phytoplankton and copepod succession was investigated in Disko Bay, western Greenland from February to July 2008. The spring phytoplankton bloom developed immediately after the breakup of sea ice and reached a peak concentration of 24 mg chl a m–3 2 wk later. The bloom was analyzed during 3 phases...... from the initiation of the bloom but only had a small grazing impact on the phytoplankton. Consequently, there was a close coupling between the spring phytoplankton bloom and sedimentation of particulate organic carbon (POC). Out of 1836 ± 180 mg C m–2 d–1 leaving the upper 50 m, 60% was phytoplankton...... and fate of the phytoplankton spring bloom was controlled by nitrogen limitation and subsequent sedimentation, while grazing-mediated flux by the Calanus-dominated copepod community played a minor role in the termination of the spring bloom of Disko Bay....

Algal blooms: an emerging threat to seawater reverse osmosis desalination

KAUST Repository

Villacorte, Loreen O.

2014-08-04

Seawater reverse osmosis (SWRO) desalination technology has been rapidly growing in terms of installed capacity and global application over the last decade. An emerging threat to SWRO application is the seasonal proliferation of microscopic algae in seawater known as algal blooms. Such blooms have caused operational problems in SWRO plants due to clogging and poor effluent quality of the pre-treatment system which eventually forced the shutdown of various desalination plants to avoid irreversible fouling of downstream SWRO membranes. This article summarizes the current state of SWRO technology and the emerging threat of algal blooms to its application. It also highlights the importance of studying the algal bloom phenomena in the perspective of seawater desalination, so proper mitigation and preventive strategies can be developed in the near future. © 2014 © 2014 Balaban Desalination Publications. All rights reserved.

Algal blooms: an emerging threat to seawater reverse osmosis desalination

KAUST Repository

Villacorte, Loreen O.; Tabatabai, S. Assiyeh Alizadeh; Dhakal, N.; Amy, Gary L.; Schippers, Jan Cornelis; Kennedy, Maria Dolores

2014-01-01

Seawater reverse osmosis (SWRO) desalination technology has been rapidly growing in terms of installed capacity and global application over the last decade. An emerging threat to SWRO application is the seasonal proliferation of microscopic algae in seawater known as algal blooms. Such blooms have caused operational problems in SWRO plants due to clogging and poor effluent quality of the pre-treatment system which eventually forced the shutdown of various desalination plants to avoid irreversible fouling of downstream SWRO membranes. This article summarizes the current state of SWRO technology and the emerging threat of algal blooms to its application. It also highlights the importance of studying the algal bloom phenomena in the perspective of seawater desalination, so proper mitigation and preventive strategies can be developed in the near future. © 2014 © 2014 Balaban Desalination Publications. All rights reserved.

Use of Bloom's Taxonomy in Developing Reading Comprehension Specifications

Science.gov (United States)

Luebke, Stephen; Lorie, James

2013-01-01

This article is a brief account of the use of Bloom's Taxonomy of Educational Objectives (Bloom, Engelhart, Furst, Hill, & Krathwohl, 1956) by staff of the Law School Admission Council in the 1990 development of redesigned specifications for the Reading Comprehension section of the Law School Admission Test. Summary item statistics for the…

Impact of trace metal concentrations on coccolithophore growth and morphology: laboratory simulations of Cretaceous stress

Science.gov (United States)

Faucher, Giulia; Hoffmann, Linn; Bach, Lennart T.; Bottini, Cinzia; Erba, Elisabetta; Riebesell, Ulf

2017-07-01

The Cretaceous ocean witnessed intervals of profound perturbations such as volcanic input of large amounts of CO2, anoxia, eutrophication and introduction of biologically relevant metals. Some of these extreme events were characterized by size reduction and/or morphological changes of a few calcareous nannofossil species. The correspondence between intervals of high trace metal concentrations and coccolith dwarfism suggests a negative effect of these elements on nannoplankton biocalcification processes in past oceans. In order to test this hypothesis, we explored the potential effect of a mixture of trace metals on growth and morphology of four living coccolithophore species, namely Emiliania huxleyi, Gephyrocapsa oceanica, Pleurochrysis carterae and Coccolithus pelagicus. The phylogenetic history of coccolithophores shows that the selected living species are linked to Mesozoic species showing dwarfism under excess metal concentrations. The trace metals tested were chosen to simulate the environmental stress identified in the geological record and upon known trace metal interactions with living coccolithophore algae.Our laboratory experiments demonstrated that elevated trace metal concentrations, similarly to the fossil record, affect coccolithophore algae size and/or weight. Smaller coccoliths were detected in E. huxleyi and C. pelagicus, while coccoliths of G. oceanica showed a decrease in size only at the highest trace metal concentrations. P. carterae coccolith size was unresponsive to changing trace metal concentrations. These differences among species allow discriminating the most- (P. carterae), intermediate- (E. huxleyi and G. oceanica) and least-tolerant (C. pelagicus) taxa. The fossil record and the experimental results converge on a selective response of coccolithophores to metal availability.These species-specific differences must be considered before morphological features of coccoliths are used to reconstruct paleo-chemical conditions.

Impact of trace metal concentrations on coccolithophore growth and morphology: laboratory simulations of Cretaceous stress

Directory of Open Access Journals (Sweden)

G. Faucher

2017-07-01

Full Text Available The Cretaceous ocean witnessed intervals of profound perturbations such as volcanic input of large amounts of CO2, anoxia, eutrophication and introduction of biologically relevant metals. Some of these extreme events were characterized by size reduction and/or morphological changes of a few calcareous nannofossil species. The correspondence between intervals of high trace metal concentrations and coccolith dwarfism suggests a negative effect of these elements on nannoplankton biocalcification processes in past oceans. In order to test this hypothesis, we explored the potential effect of a mixture of trace metals on growth and morphology of four living coccolithophore species, namely Emiliania huxleyi, Gephyrocapsa oceanica, Pleurochrysis carterae and Coccolithus pelagicus. The phylogenetic history of coccolithophores shows that the selected living species are linked to Mesozoic species showing dwarfism under excess metal concentrations. The trace metals tested were chosen to simulate the environmental stress identified in the geological record and upon known trace metal interactions with living coccolithophore algae.Our laboratory experiments demonstrated that elevated trace metal concentrations, similarly to the fossil record, affect coccolithophore algae size and/or weight. Smaller coccoliths were detected in E. huxleyi and C. pelagicus, while coccoliths of G. oceanica showed a decrease in size only at the highest trace metal concentrations. P. carterae coccolith size was unresponsive to changing trace metal concentrations. These differences among species allow discriminating the most- (P. carterae, intermediate- (E. huxleyi and G. oceanica and least-tolerant (C. pelagicus taxa. The fossil record and the experimental results converge on a selective response of coccolithophores to metal availability.These species-specific differences must be considered before morphological features of coccoliths are used to reconstruct paleo-chemical conditions.

Importance of coccolithophore-associated organic biopolymers for fractionating particle-reactive radionuclides (234Th, 233Pa, 210Pb, 210Po, and 7Be) in the ocean

Science.gov (United States)

Lin, Peng; Xu, Chen; Zhang, Saijin; Sun, Luni; Schwehr, Kathleen A.; Bretherton, Laura; Quigg, Antonietta; Santschi, Peter H.

2017-08-01

Laboratory incubation experiments using the coccolithophore Emiliania huxleyi were conducted in the presence of 234Th, 233Pa, 210Pb, 210Po, and 7Be to differentiate radionuclide uptake to the CaCO3 coccosphere from coccolithophore-associated biopolymers. The coccosphere (biogenic calcite exterior and its associated biopolymers), extracellular (nonattached and attached exopolymeric substances), and intracellular (sodium-dodecyl-sulfate extractable and Fe-Mn-associated metabolites) fractions were obtained by sequentially extraction after E. huxleyi reached its stationary growth phase. Radionuclide partitioning and the composition of different organic compound classes, including proteins, total carbohydrates (TCHO), and uronic acids (URA), were assessed. 210Po was closely associated with the more hydrophobic biopolymers (high protein/TCHO ratio, e.g., in attached exopolymeric substances), while 234Th and 233Pa showed similar partitioning behavior with most activity being distributed in URA-enriched, nonattached exopolymeric substances and intracellular biopolymers. 234Th and 233Pa were nearly undetectable in the coccosphere, with a minor abundance of organic components in the associated biopolymers. These findings provide solid evidence that biogenic calcite is not the actual main carrier phase for Th and Pa isotopes in the ocean. In contrast, both 210Pb and 7Be were found to be mostly concentrated in the CaCO3 coccosphere, likely substituting for Ca2+ during coccolith formation. Our results demonstrate that even small cells (E. huxleyi) can play an important role in the scavenging and fractionation of radionuclides. Furthermore, the distinct partitioning behavior of radionuclides in diatoms (previous studies) and coccolithophores (present study) explains the difference in the scavenging of radionuclides between diatom- and coccolithophore-dominated marine environments.

Importance of a winter dinoflagellate-microflagellate bloom in the Patuxent River estuary

Science.gov (United States)

Sellner, K. G.; Lacouture, R. V.; Cibik, S. J.; Brindley, A.; Brownlee, S. G.

1991-01-01

A dense bloom of Katodinium rotundatum was observed in the Patuxent River estuary from December to February 1989. The dinoflagellate dominated phytoplankton densities reaching 10 8 cells l -1 and contributed up to 1900 μgC l -1 in near-surface depths. The bloom maintained a distinct patch extending over 10-25 km of the estuary or approximately one-third to one-half of the total estuary (salinities from 5-13 ppt) and was restricted to regions immediately upriver of the transition between the shallow upriver (3-4 m) and deeper lower estuary (10 m). Daily measurements collected in the primary bloom area at the same time each day in the study area indicated 80- and 120-fold variations in chlorophyll and cell densities from day to day. Densities of potential grazers in the region were high with rotifers, primarily Synchaeta baltica, reaching densities of 1000 l -1 in early winter, and the copepod Eurytemora affinis reaching levels exceeding 1·15 × 10 5 m -3 in February. Estimates of grazing pressure by these planktonic herbivores indicated substantial grazing losses for the bloom, with up to 67% of bloom biomass consumed day -1 in February. Nutrient concentrations and ratios of N/P during the bloom suggested potentially N-limited conditions; bloom demise was coincident with a shift to high N/P ratios and high river flows. These data as well as other historical data suggest that dinoflagellate blooms in the lower Patuxent River estuary could be the primary source of carbon to the system during the winter and supply a large reservoir of labile organic matter to planktonic secondary producers prior to annual spring diatom blooms in the region.

OSU MODIS FLH Bloom Product

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Two bloom products were developed for the Oregon coast based on the observed change between running 8-day composite chlorophyll-a (CHL) and fluorescence line-height...

Potentially harmful microalgae and algal blooms in a eutrophic estuary in Turkey

Directory of Open Access Journals (Sweden)

S. TAS

2015-07-01

Full Text Available Distribution of potentially harmful microalgae and algal blooms were investigated at monthly and weekly time scales between October 2009 and September 2010 in the Golden Horn, a eutrophic estuary in the Sea of Marmara (Turkey. Several physical and chemical parameters were analysed together with phytoplankton composition and abundance. A total number of 23 potentially harmful and/or bloom-forming microalgae (14 dinoflagellates, 4 diatoms and 5 phytoflagellates were identified throughout this study period, of which nine taxa have been confirmed to be toxic elsewhere in the world. Most harmful species and algal blooms were observed in late spring and summer particularly in the middle and upper estuaries, and nine taxa formed dense and successive algal blooms causing water discoloration. Nutrient concentrations increased significantly from the lower to the upper estuary. Additionally, high organic matter loads in the upper estuary could also have benefited by mixotrophic species. The increasing number of potentially harmful and bloom-forming species and algal blooms indicated that the GHE is a potential risk area for future HABs.

Characteristics of picoplankton abundances during a Thalassiosira diporocyclus bloom in the Taiwan Bank in late winter.

Science.gov (United States)

Jiang, Xin; Li, Jiajun; Ke, Zhixin; Xiang, Chenhui; Tan, Yehui; Huang, Liangmin

2017-04-15

To understand the variations of picoplankton (Prochlorococcus, Synechococcus, picoeukaryotes, and heterotrophic bacteria) abundances during diatom bloom, the distribution of picoplankton in the Taiwan Bank, South China Sea was investigated using flow cytometry during a Thalassiosira diporocyclus bloom in March 2016. The results indicated an abrupt abundance decrease for Prochlorococcus, Synechococcus, and picoeukaryotes within the bloom area while the abundance of heterotrophic bacteria showed no significant difference between the bloom and non-bloom areas. We found two sub-groups of heterotrophic bacteria: high- and low-nucleic acid content (HNA and LNA) bacteria with HNA dominated in the bloom area whereas LNA dominated in the non-bloom area. Among the picoplankton components, HNA represented the highest (61.1%) carbon biomass in the bloom area while picoeukaryotes represented the highest (37.6%) in the non-bloom area. Our findings implied that heterotrophic bacteria, especially HNA, played an essential role during the diatom bloom. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seasonal calcareous nannoplankton and other biogenic particle fluxes for 1990-2009: twenty-year long records from the central subarctic Pacific Ocean and the Bering Sea

Science.gov (United States)

Takahashi, Kozo; Tsutsui, Hideto

2017-04-01

Time-series sediment traps were deployed for nearly 20 years (1990-2009) at two long-term locations: Station SA (49°N, 174°W, trap depth 4,800 m, water depth 5,400 m) in the central subarctic Pacific, and Station AB (53.5°N, 177°W, trap depth 3,200 m, water depth 3,800 m) in the southern Bering Sea. Among many biogenic particles, calcareous nannoplankton represented nearly half or more of the entire calcium carbonate fluxes of the regions. Dominant taxa include Coccolithus pelagicus and Emiliania huxleyi. The flux maxima of the former taxon occurred twice a year during June and October-November, whereas that of the latter taxon only occurred primarily once a year in November at both stations, indicating environmental preferences of the taxa. Among many environmental conditions, the fluxes of Emiliania huxleyi showed strong correlations with both water temperatures above 45 m depth and air temperatures (these parameters taken with one-month lag [earlier values] considering sinking time of ca. a month to the respective trap depths). Coccolithus pelagicus, on the other hand, showed lower values in the correlation with temperatures (Tsutsui et al., 2016), indicating that this taxon is somewhat more dependent on other factors such as nutrients compared to those of E. huxleyi. The timings of the seasonal flux maxima of calcareous nannoplankton are quite different from and later than those of other taxonomic groups such as diatoms and silicoflagellates. The primary seasonal flux maxima of diatoms and silicoflagellates, for example, occurred in May, a month earlier than the June maximum of C. pelagicus, and secondary seasonal flux maxima occurred in August, 2-3 months earlier than those of calcareous nannoplankton at both stations, based on 8 year flux records for diatoms (Onodera and Takahashi, 2009) and 4 year records for silicoflagellates (Onodera and Takahashi, 2012). By examining seasonal changes of nitrate and phosphate concentrations above 50 m depth from ERDDAP

New Coccolithophore Bloom in Bering Sea

Science.gov (United States)

2002-01-01

For the fourth year in a row it appears as if there is a bloom of coccolithophores-marine single-celled plants with calcite scales-in the Bering Sea off the coast of Alaska. Similar blooms were rare before 1997, but they have appeared every year since then. Scientists believe the coccolithophore blooms are the result of changing wind patterns in the region. Weaker than normal winds fail to mix the water of the Bering Sea, resulting in the growth of coccolithophores instead of other types of phytoplankton. Seabird populations have also been changing as a result of this climate change. The Sea-Viewing Wide Field-of-View Sensor (SeaWiFS), flying aboard the OrbView-2 satellite, saw the coccolith-brightened waters of the Bering Sea in 1997, 1998, and 1999. The waters have looked fairly bright again this winter and spring, as seen in this SeaWiFS image acquired April 29, 2000. But scientists are unsure whether this year's phenomenon is caused by living coccolithophorids, re-suspended coccoliths, or something else. Like all phytoplankton, coccolithophores contain chlorophyll and have the tendency to multiply rapidly near the surface. Yet, in large numbers, coccolithophores periodically shed their tiny scales, called 'coccoliths,' by the bucketful into the surrounding waters. The calcium-rich coccoliths turn the normally dark water a bright, milky aquamarine, making coccolithophore blooms easy to spot in satellite imagery. The edge of the whitish cloud in the water seen in this image is roughly 50 kilometers off the West Coast of Alaska. For more information see: SeaWiFS home page Changing Currents Color the Bering Sea a New Shade of Blue Image courtesy SeaWiFS project

Environmental dynamics of red Noctiluca scintillans bloom in tropical coastal waters.

Science.gov (United States)

Baliarsingh, S K; Lotliker, Aneesh A; Trainer, Vera L; Wells, Mark L; Parida, Chandanlal; Sahu, Biraja K; Srichandan, Suchismita; Sahoo, Subhashree; Sahu, K C; Kumar, T Sinivasa

2016-10-15

An intense bloom of red Noctiluca scintillans (NS) occurred off the Rushikulya estuarine region along the east coast of India, an important site for mass nesting events of the vulnerable Olive Ridley sea turtle. At its peak, densities of NS were 3.3×10(5) cells-l(-1), with low relative abundance of other phytoplankton. The peak bloom coincided with high abundance of gelatinous planktivores which may have facilitated bloom development by their grazing on other zooplankton, particularly copepods. Ammonium concentrations increased by approximately 4-fold in the later stages of bloom, coincident with stable NS abundance and chlorophyll concentrations in the nano- and microplankton. This increase likely was attributable to release of intracellular ammonium accumulated through NS grazing. Dissolved oxygen concentrations decreased in sub-surface waters to near hypoxia. Micro-phytoplankton increasingly dominated chlorophyll-a biomass as the bloom declined, with diminishing picoplankton abundance likely the result of high predation by the ciliate Mesodinium rubrum. Together, these data illustrate factors that can disrupt ecosystem balance in this critically important Indian coastal region. Copyright © 2016 Elsevier Ltd. All rights reserved.

An overview of cyanobacterial bloom occurrences and research in Africa over the last decade.

Science.gov (United States)

Ndlela, L L; Oberholster, P J; Van Wyk, J H; Cheng, P H

2016-12-01

Cyanobacterial blooms are a current cause for concern globally, with vital water sources experiencing frequent and increasingly toxic blooms in the past decade. These increases are resultant of both anthropogenic and natural factors, with climate change being the central concern. Of the more affected parts of the world, Africa has been considered particularly vulnerable due to its historical predisposition and lag in social economic development. This review collectively assesses the available information on cyanobacterial blooms in Africa as well as any visible trends associated with reported occurrences over the last decade. Of the 54 countries in Africa, only 21 have notable research information in the area of cyanobacterial blooms within the last decade, although there is substantial reason to attribute these blooms as some of the major water quality threats in Africa collectively. The collected information suggests that civil wars, disease outbreaks and inadequate infrastructure are at the core of Africa's delayed advancement. This is even more so in the area of cyanobacteria related research, with 11 out of 21 countries having recorded toxicity and physicochemical parameters related to cyanobacterial blooms. Compared to the rest of the continent, peripheral countries are at the forefront of research related to cyanobacteria, with countries such as Angola having sufficient rainfall, but poor water quality with limited information on bloom occurrences. An assessment of the reported blooms found nitrogen concentrations to be higher in the water column of more toxic blooms, validating recent global studies and indicating that phosphorous is not the only factor to be monitored in bloom mitigation. Blooms occurred at low TN: TP ratios and at temperatures above 12°C. Nitrogen was linked to toxicity and temperature also had a positive effect on bloom occurrence and toxicity. Microcystis was the most ubiquitous of the cyanobacterial strains reported in Africa and the

Monsoonal and fertility contols on recent marginal sea and continental shelf coccolith assemblages from the western Pacific and northern Indian Oceans

Digital Repository Service at National Institute of Oceanography (India)

Houghton, S.D.; Guptha, M.V.S.

Gill, 1973). These nutrient-enriched surface waters support large blooms of the diatom Rhizo- solenia (Nair et al., 1989). High fluxes of carbonate, mainly coccolithophorids with some foraminifera, are associated with the monsoons. High levels.... In the low-latitude Pacific Ocean, high abun- dances of E. huxleyi (>40%) are generally re- stricted to assemblages beneath waters of low to medium fertility; these areas include the East Pacific Rise (near the Galapogos Islands), and below the central...

The costs of respiratory illnesses arising from Florida gulf coast Karenia brevis blooms.

Science.gov (United States)

Hoagland, Porter; Jin, Di; Polansky, Lara Y; Kirkpatrick, Barbara; Kirkpatrick, Gary; Fleming, Lora E; Reich, Andrew; Watkins, Sharon M; Ullmann, Steven G; Backer, Lorraine C

2009-08-01

Algal blooms of Karenia brevis, a harmful marine algae, occur almost annually off the west coast of Florida. At high concentrations, K. brevis blooms can cause harm through the release of potent toxins, known as brevetoxins, to the atmosphere. Epidemiologic studies suggest that aerosolized brevetoxins are linked to respiratory illnesses in humans. We hypothesized a relationship between K. brevis blooms and respiratory illness visits to hospital emergency departments (EDs) while controlling for environmental factors, disease, and tourism. We sought to use this relationship to estimate the costs of illness associated with aerosolized brevetoxins. We developed a statistical exposure-response model to express hypotheses about the relationship between respiratory illnesses and bloom events. We estimated the model with data on ED visits, K. brevis cell densities, and measures of pollen, pollutants, respiratory disease, and intra-annual population changes. We found that lagged K. brevis cell counts, low air temperatures, influenza outbreaks, high pollen counts, and tourist visits helped explain the number of respiratory-specific ED diagnoses. The capitalized estimated marginal costs of illness for ED respiratory illnesses associated with K. brevis blooms in Sarasota County, Florida, alone ranged from $0.5 to $4 million, depending on bloom severity. Blooms of K. brevis lead to significant economic impacts. The costs of illness of ED visits are a conservative estimate of the total economic impacts. It will become increasingly necessary to understand the scale of the economic losses associated with K. brevis blooms to make rational choices about appropriate mitigation.

Remote Sensing Marine Ecology: Wind-driven algal blooms in the open oceans and their ecological impacts

Science.gov (United States)

Tang, DanLing

2016-07-01

Algal bloom not only can increase the primary production but also could result in negative ecological consequence, e.g., Harmful Algal Blooms (HABs). According to the classic theory for the formation of algal blooms "critical depth" and "eutrophication", oligotrophic sea area is usually difficult to form a large area of algal blooms, and actually the traditional observation is only sporadic capture to the existence of algal blooms. Taking full advantage of multiple data of satellite remote sensing, this study: 1), introduces "Wind-driven algal blooms in open oceans: observation and mechanisms" It explained except classic coastal Ekman transport, the wind through a variety of mechanisms affecting the formation of algal blooms. Proposed a conceptual model of "Strong wind -upwelling-nutrient-phytoplankton blooms" in Western South China Sea (SCS) to assess role of wind-induced advection transport in phytoplankton bloom formation. It illustrates the nutrient resources that support long-term offshore phytoplankton blooms in the western SCS; 2), Proposal of the theory that "typhoons cause vertical mixing, induce phytoplankton blooms", and quantify their important contribution to marine primary production; Proposal a new ecological index for typhoon. Proposed remote sensing inversion models. 3), Finding of the spatial and temporaldistributions pattern of harmful algal bloom (HAB)and species variations of HAB in the South Yellow Sea and East China Sea, and in the Pearl River estuary, and their oceanic dynamic mechanisms related with monsoon; The project developed new techniques and generated new knowledge, which significantly improved understanding of the formation mechanisms of algal blooms. 1), It proposed "wind-pump" mechanism integrates theoretical system combing "ocean dynamics, development of algal blooms, and impact on primary production", which will benefit fisheries management. 2), A new interdisciplinary subject "Remote Sensing Marine Ecology"(RSME) has been

Siderophores: The special ingredient to cyanobacterial blooms

Science.gov (United States)

Du, Xue; Creed, Irena; Trick, Charles

2013-04-01

Freshwater lakes provide a number of significant ecological services including clean drinking water, habitat for aquatic biota, and economic benefits. The provision of these ecological services, as well as the health of these aquatic systems, is threatened by the excessive growth of algae, specifically, cyanobacteria. Historically, blooms have been linked to eutrophication but recent occurrences indicate that there are less dramatic changes that induce these blooms. Iron is an essential micronutrient required for specific essential metabolic pathways; however, the amount of biologically available iron in naturally occurring lake ranges from saturation to much lower than cell transport affinities. To assist in the modulation of iron availabilities, cyanobacteria in culture produce low molecular weight compounds that function in an iron binding and acquisition system; nevertheless, this has yet to be confirmed in naturally occurring lakes. This project explored the relationship of P, N and in particular, Fe, in the promotion of cyanobacteria harmful algal blooms in 30 natural freshwater lakes located in and around the Elk Island National Park, Alberta. It is hypothesized that cyanobacteria produce and utilize iron chelators called siderophores in low Fe and nitrogen (N) conditions, creating a competitive advantage over other algae in freshwater lakes. Lakes were selected to represent a range of iron availability to explore the nutrient composition of lakes that propagated cyanobacteria harmful algal blooms (cHABs) compared to lakes that did not. Lake water was analyzed for nutrients, microbial composition, siderophore concentration, and toxin concentration. Modifications were made to optimize the Czaky and Arnow tests for hydroxamate- and catecholate-type siderophores, respectively, for field conditions. Preliminary results indicate the presence of iron-binding ligands (0.11-2.34 mg/L) in freshwater lakes characterized by widely ranging Fe regimes (0.04-2.74 mg

Deep carbon export from a Southern Ocean iron-fertilized diatom bloom

Digital Repository Service at National Institute of Oceanography (India)

Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d’Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Rottgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbruggen, A.; Wolf-Gladrow, D.

Fertilization of the ocean by adding iron compounds has induced diatom-dominated phytoplankton blooms accompanied by considerable carbon dioxide drawdown in the ocean surface layer. However, because the fate of bloom biomass could not be adequately...

A novel earth observation based ecological indicator for cyanobacterial blooms

Science.gov (United States)

Anttila, Saku; Fleming-Lehtinen, Vivi; Attila, Jenni; Junttila, Sofia; Alasalmi, Hanna; Hällfors, Heidi; Kervinen, Mikko; Koponen, Sampsa

2018-02-01

Cyanobacteria form spectacular mass occurrences almost annually in the Baltic Sea. These harmful algal blooms are the most visible consequences of marine eutrophication, driven by a surplus of nutrients from anthropogenic sources and internal processes of the ecosystem. We present a novel Cyanobacterial Bloom Indicator (CyaBI) targeted for the ecosystem assessment of eutrophication in marine areas. The method measures the current cyanobacterial bloom situation (an average condition of recent 5 years) and compares this to the estimated target level for 'good environmental status' (GES). The current status is derived with an index combining indicative bloom event variables. As such we used seasonal information from the duration, volume and severity of algal blooms derived from earth observation (EO) data. The target level for GES was set by using a remote sensing based data set named Fraction with Cyanobacterial Accumulations (FCA; Kahru & Elmgren, 2014) covering years 1979-2014. Here a shift-detection algorithm for time series was applied to detect time-periods in the FCA data where the level of blooms remained low several consecutive years. The average conditions from these time periods were transformed into respective CyaBI target values to represent target level for GES. The indicator is shown to pass the three critical factors set for marine indicator development, namely it measures the current status accurately, the target setting can be scientifically proven and it can be connected to the ecosystem management goal. An advantage of the CyaBI method is that it's not restricted to the data used in the development work, but can be complemented, or fully applied, by using different types of data sources providing information on cyanobacterial accumulations.

Harmful algal blooms of the Southern Benguela current: A review ...

African Journals Online (AJOL)

Harmful algal blooms of the Southern Benguela current: A review and appraisal of monitoring from 1989 to 1997. ... The Benguela upwelling system is subjected to blooms of harmful and toxic algae, the incidence and consequences of which are documented here. Red tides are common and usually attributed to members of ...

Effect of Zeolite Treatment on the Blooming Behavior of Paraffin Wax in Natural Rubber Composites

Directory of Open Access Journals (Sweden)

Bryan B. Pajarito

2016-06-01

Full Text Available The blooming behavior of paraffin wax in natural rubber (NR composites was studied as function of zeolite treatment. Three types of zeolite treatment were treated as factors: acid activation using hydrochloric acid (HCl solution, ion exchange using tetradecyldimethyl amine (TDA chloride salt, and organic modification using glycerol monostearate (GMS. The zeolite was treated according to a 23 full factorial design of experiment. Attenuated total reflectance – Fourier transform infrared (ATR-FTIR spectroscopy was used to characterize the chemical structure of treated zeolite. Treated zeolite was applied as filler to NR composites deliberately compounded with high amount of paraff in wax. The amount of bloomed wax in surface of NR composite sheets was monitored with time at 50oC. Results show the bloom amount to be linear with the square root of time. NR composites reinforced with untreated, acid-activated, and ion-exchanged zeolite fillers indicate reduction in wax blooming as compared to unfilled NR. The bloom rate (slope and initial bloom (y-intercept were determined from the experimental plots. Analysis of variance (ANOVA shows the bloom rate to be signif icantly increased when zeolite fillers are treated with GMS. Meanwhile, initial bloom was significantly enhanced when zeolite fillers are treated with TDA chloride salt and GMS. The significant increase in bloom rate and initial bloom can be attributed to the softening of the NR matrix at high amounts of TDA chloride salt and GMS.

Contributions of meteorology to the phenology of cyanobacterial blooms: implications for future climate change.

Science.gov (United States)

Zhang, Min; Duan, Hongtao; Shi, Xiaoli; Yu, Yang; Kong, Fanxiang

2012-02-01

Cyanobacterial blooms are often a result of eutrophication. Recently, however, their expansion has also been found to be associated with changes in climate. To elucidate the effects of climatic variables on the expansion of cyanobacterial blooms in Taihu, China, we analyzed the relationships between climatic variables and bloom events which were retrieved by satellite images. We then assessed the contribution of each climate variable to the phenology of blooms using multiple regression models. Our study demonstrates that retrieving ecological information from satellite images is meritorious for large-scale and long-term ecological research in freshwater ecosystems. Our results show that the phenological changes of blooms at an inter-annual scale are strongly linked to climate in Taihu during the past 23 yr. Cyanobacterial blooms occur earlier and last longer with the increase of temperature, sunshine hours, and global radiation and the decrease of wind speed. Furthermore, the duration increases when the daily averages of maximum, mean, and minimum temperature each exceed 20.3 °C, 16.7 °C, and 13.7 °C, respectively. Among these factors, sunshine hours and wind speed are the primary contributors to the onset of the blooms, explaining 84.6% of their variability over the past 23 yr. These factors are also good predictors of the variability in the duration of annual blooms and determined 58.9% of the variability in this parameter. Our results indicate that when nutrients are in sufficiently high quantities to sustain the formation of cyanobacterial blooms, climatic variables become crucial in predicting cyanobacterial bloom events. Climate changes should be considered when we evaluate how much the amount of nutrients should be reduced in Taihu for lake management. Copyright © 2011 Elsevier Ltd. All rights reserved.

Climate Adaptation and Harmful Algal Blooms

Science.gov (United States)

EPA supports local, state and tribal efforts to maintain water quality. A key element of its efforts is to reduce excess nutrient pollution and the resulting adverse impacts, including harmful algal blooms.

Phytoplankton dynamics in contrasting early stage North Atlantic spring blooms: composition, succession, and potential drivers

DEFF Research Database (Denmark)

Daniels, C.J.; Poulton, A. J.; Esposito, M.

2015-01-01

The spring bloom is a key annual event in the phenology of pelagic ecosystems, making a major contribution to the oceanic biological carbon pump through the production and export of organic carbon. However, there is little consensus as to the main drivers of spring bloom formation, exacerbated......) of the 2012 North Atlantic spring bloom. The plankton composition and characteristics of the initial stages of the bloom were markedly different between the two basins. The Iceland Basin (ICB) appeared well mixed to > 400 m, yet surface chlorophyll a (0.27–2.2 mg m–3) and primary production (0.06–0.66 mmol C...... suggest micro-zooplankton grazing, potentially coupled with the lack of a seed population of bloom forming diatoms, was restricting diatom growth in the NWB, and that large diatoms may be absent in NWB spring blooms. Despite both phytoplankton communities being in the early stages of bloom formation...

Identification of Phytoplankton Blooms under the Index of Inherent Optical Properties (IOP Index in Optically Complex Waters

Directory of Open Access Journals (Sweden)

Jesús A. Aguilar-Maldonado

2018-01-01

Full Text Available Phytoplankton blooms are sporadic events in time and are isolated in space. This complex phenomenon is produced by a variety of both natural and anthropogenic causes. Early detection of this phenomenon, as well as the classification of a water body under conditions of bloom or non-bloom, remains an unresolved problem. This research proposes the use of Inherent Optical Properties (IOPs in optically complex waters to detect the bloom or non-bloom state of the phytoplankton community. An IOP index is calculated from the absorption coefficients of the colored dissolved organic matter (CDOM, the phytoplankton (phy and the detritus (d, using the wavelength (λ 443 nm. The effectiveness of this index is tested in five bloom events in different places and with different characteristics from Mexican seas: 1. Dzilam (Caribbean Sea, Atlantic Ocean, a diatom bloom (Rhizosolenia hebetata; 2. Holbox (Caribbean Sea, Atlantic Ocean, a mixed bloom of dinoflagellates (Scrippsiella sp. and diatoms (Chaetoceros sp.; 3. Campeche Bay in the Gulf of Mexico (Atlantic Ocean, a bloom of dinoflagellates (Karenia brevis; 4. Upper Gulf of California (UGC (Pacific Ocean, a diatom bloom (Coscinodiscus and Pseudo-nitzschia and 5. Todos Santos Bay, Ensenada (Pacific Ocean, a dinoflagellate bloom (Lingulodinium polyedrum. The diversity of sites show that the IOP index is a suitable method to determine the phytoplankton bloom conditions.

Unpacking the Revised Bloom's Taxonomy: Developing Case-Based Learning Activities

Science.gov (United States)

Nkhoma, Mathews Zanda; Lam, Tri Khai; Sriratanaviriyakul, Narumon; Richardson, Joan; Kam, Booi; Lau, Kwok Hung

2017-01-01

Purpose: The purpose of this paper is to propose the use of case studies in teaching an undergraduate course of Internet for Business in class, based on the revised Bloom's taxonomy. The study provides the empirical evidence about the effect of case-based teaching method integrated the revised Bloom's taxonomy on students' incremental learning,…

Development of the composition of chocolate mass that resistant to bloom

Directory of Open Access Journals (Sweden)

M. E. Tkeshelashvili

2017-01-01

Full Text Available Chocolate or used as a coating on the surface of the sweets chocolate mass when exposed to a temperature drop and/or a drop in the humidity of the environment, change color, lose gloss and acquire an unwanted grayish-white surface. The loss of the appearance of chocolate – the effect of bloom is the reason for the return of products from the trading network causing highly tangible the economic damage to the producers. In this connection, experimental researches devoted to the problem of preventing bloom and developing consist of chocolate masses preclusion to bloom appear to be an urgent task. The purpose of the research is develop consist of chocolate and covering chocolate resistant to bloom. The work is performed at the Scientific research institute of «Applied research of innovative technologies and food quality» of Plekhanov Russian University of Economics. For an investigation, samples of chocolate and covering chocolate based on cocoa butter were made in the formulation of which an additive including milk fat/isomalt/polydextrose. The control samples were dark chocolate and covering chocolate prepared according to a unified formula. For the formation of blooming, the samples were exposed to temperature fluctuations and relative humidity. The measurement of the color of chocolate is implementation by an instrumental method based on the analysis of the optical characteristics of the product. The coefficients of reflection spectra of samples of chocolate were converted into color coordinates of space CIEL ? a ? b* 1976. The emergence of a bloom of chocolate by changing the parameter lightness L ? (CIEL ? a ? b* was diagnosed. The effect of introducing an additive, including milk fat/isomalt/polydextrose on fat and sugar bloom, was determined in the formulation of chocolate masses. Based on research the consist of the chocolate mass has been developed which practically does not change the taste of the finished chocolate products

The Cyanobacteria Assessment Network - Recent Success in Harmful Algal Bloom Detection

Science.gov (United States)

Cyanobacteria blooms, which can become harmful algal blooms (HABs), are a huge environmental problem across the United States. They are capable of producing dangerous toxins that threaten the health of humans and animals, quality of drinking water supplies, and the ecosystem in w...

Service discovery using Bloom filters

NARCIS (Netherlands)

Goering, P.T.H.; Heijenk, Geert; Lelieveldt, B.P.F.; Haverkort, Boudewijn R.H.M.; de Laat, C.T.A.M.; Heijnsdijk, J.W.J.

A protocol to perform service discovery in adhoc networks is introduced in this paper. Attenuated Bloom filters are used to distribute services to nodes in the neighborhood and thus enable local service discovery. The protocol has been implemented in a discrete event simulator to investigate the

Analysis of algal bloom risk with uncertainties in lakes by integrating self-organizing map and fuzzy information theory

Energy Technology Data Exchange (ETDEWEB)

Chen, Qiuwen, E-mail: qchen@rcees.ac.cn [RCEES, Chinese Academy of Sciences, Shuangqinglu 18, Beijing 10085 (China); China Three Gorges University, Daxuelu 8, Yichang 443002 (China); CEER, Nanjing Hydraulics Research Institute, Guangzhoulu 223, Nanjing 210029 (China); Rui, Han; Li, Weifeng; Zhang, Yanhui [RCEES, Chinese Academy of Sciences, Shuangqinglu 18, Beijing 10085 (China)

2014-06-01

Algal blooms are a serious problem in waters, which damage aquatic ecosystems and threaten drinking water safety. However, the outbreak mechanism of algal blooms is very complex with great uncertainty, especially for large water bodies where environmental conditions have obvious variation in both space and time. This study developed an innovative method which integrated a self-organizing map (SOM) and fuzzy information diffusion theory to comprehensively analyze algal bloom risks with uncertainties. The Lake Taihu was taken as study case and the long-term (2004–2010) on-site monitoring data were used. The results showed that algal blooms in Taihu Lake were classified into four categories and exhibited obvious spatial–temporal patterns. The lake was mainly characterized by moderate bloom but had high uncertainty, whereas severe blooms with low uncertainty were observed in the northwest part of the lake. The study gives insight on the spatial–temporal dynamics of algal blooms, and should help government and decision-makers outline policies and practices on bloom monitoring and prevention. The developed method provides a promising approach to estimate algal bloom risks under uncertainties. - Highlights: • An innovative method is developed to analyze algal bloom risks with uncertainties. • The algal blooms in Taihu Lake showed obvious spatial and temporal patterns. • The lake is mainly characterized as moderate bloom but with high uncertainty. • Severe bloom with low uncertainty appeared occasionally in the northwest part. • The results provide important information to bloom monitoring and management.

Hydrodynamic control of microphytoplankton bloom in a coastal sea

Science.gov (United States)

Murty, K. Narasimha; Sarma, Nittala S.; Pandi, Sudarsana Rao; Chiranjeevulu, Gundala; Kiran, Rayaprolu; Muralikrishna, R.

2017-08-01

The influence of hydrodynamics on phytoplankton bloom occurrence/formation has not been adequately reported. Here, we document diurnal observations in the tropical Bay of Bengal's mid-western shelf region which reveal microphytoplankton cell density maxima in association with neap tide many times more than what could be accounted for by solar insolation and nutrient levels. When in summer, phytoplankton cells were abundant and the cell density of Guinardia delicatula reached critical value by tide caused zonation, aggregation happened to an intense bloom. Mucilaginous exudates from the alga due to heat and silicate stress likely promoted and stable water column and weak winds left undisturbed, the transient bloom. The phytoplankton aggregates have implication as food resource in the benthic region implying higher fishery potential, in carbon dioxide sequestration (carbon burial) and in efforts towards improving remote sensing algorithms for chlorophyll in the coastal region.

Climbing Bloom's taxonomy pyramid: Lessons from a graduate histology course.

Science.gov (United States)

Zaidi, Nikki B; Hwang, Charles; Scott, Sara; Stallard, Stefanie; Purkiss, Joel; Hortsch, Michael

2017-09-01

Bloom's taxonomy was adopted to create a subject-specific scoring tool for histology multiple-choice questions (MCQs). This Bloom's Taxonomy Histology Tool (BTHT) was used to analyze teacher- and student-generated quiz and examination questions from a graduate level histology course. Multiple-choice questions using histological images were generally assigned a higher BTHT level than simple text questions. The type of microscopy technique (light or electron microscopy) used for these image-based questions did not result in any significant differences in their Bloom's taxonomy scores. The BTHT levels for teacher-generated MCQs correlated positively with higher discrimination indices and inversely with the percent of students answering these questions correctly (difficulty index), suggesting that higher-level Bloom's taxonomy questions differentiate well between higher- and lower-performing students. When examining BTHT scores for MCQs that were written by students in a Multiple-Choice Item Development Assignment (MCIDA) there was no significant correlation between these scores and the students' ability to answer teacher-generated MCQs. This suggests that the ability to answer histology MCQs relies on a different skill set than the aptitude to construct higher-level Bloom's taxonomy questions. However, students significantly improved their average BTHT scores from the midterm to the final MCIDA task, which indicates that practice, experience and feedback increased their MCQ writing proficiency. Anat Sci Educ 10: 456-464. © 2017 American Association of Anatomists. © 2017 American Association of Anatomists.

Rising CO2 levels will intensify phytoplankton blooms in eutrophic and hypertrophic lakes.

Directory of Open Access Journals (Sweden)

Jolanda M H Verspagen

Full Text Available Harmful algal blooms threaten the water quality of many eutrophic and hypertrophic lakes and cause severe ecological and economic damage worldwide. Dense blooms often deplete the dissolved CO2 concentration and raise pH. Yet, quantitative prediction of the feedbacks between phytoplankton growth, CO2 drawdown and the inorganic carbon chemistry of aquatic ecosystems has received surprisingly little attention. Here, we develop a mathematical model to predict dynamic changes in dissolved inorganic carbon (DIC, pH and alkalinity during phytoplankton bloom development. We tested the model in chemostat experiments with the freshwater cyanobacterium Microcystis aeruginosa at different CO2 levels. The experiments showed that dense blooms sequestered large amounts of atmospheric CO2, not only by their own biomass production but also by inducing a high pH and alkalinity that enhanced the capacity for DIC storage in the system. We used the model to explore how phytoplankton blooms of eutrophic waters will respond to rising CO2 levels. The model predicts that (1 dense phytoplankton blooms in low- and moderately alkaline waters can deplete the dissolved CO2 concentration to limiting levels and raise the pH over a relatively wide range of atmospheric CO2 conditions, (2 rising atmospheric CO2 levels will enhance phytoplankton blooms in low- and moderately alkaline waters with high nutrient loads, and (3 above some threshold, rising atmospheric CO2 will alleviate phytoplankton blooms from carbon limitation, resulting in less intense CO2 depletion and a lesser increase in pH. Sensitivity analysis indicated that the model predictions were qualitatively robust. Quantitatively, the predictions were sensitive to variation in lake depth, DIC input and CO2 gas transfer across the air-water interface, but relatively robust to variation in the carbon uptake mechanisms of phytoplankton. In total, these findings warn that rising CO2 levels may result in a marked

Chaos Theory and James Joyce's "ulysses": Leopold Bloom as a Human COMPLEX@SYSTEM^

Science.gov (United States)

Mackey, Peter Francis

1995-01-01

These four ideas apply as much to our lives as to the life of Leopold Bloom: (1) A trivial decision can wholly change a life. (2) A chance encounter can dramatically alter life's course. (3) A contingent nexus exists between consciousness and environment. (4) A structure of meaning helps us interpret life's chaos. These ideas also relate to a contemporary science called by some "chaos theory." The connection between Ulysses and chaos theory enhances our understanding of Bloom's day; it also suggests that this novel may be about the real process of life itself. The first chapter explains how Joyce's own essays and comments to friends compel attention to the links between Ulysses and chaos theory. His scientific contemporaries anticipated chaos theory, and their ideas seem to have rubbed off on him. We see this in his sense of trivial things and chance, his modernistic organizational impulses, and the contingent nature of Bloom's experience. The second chapter studies what chaos theory and Joyce's ideas tell us about "Ithaca," the episode which particularly implicates our processes of interpreting this text as well as life itself as we face their chaos. The third chapter examines Bloom's close feel for the aboriginal world, a contingency that clarifies his vulnerability to trivial changes. The fourth chapter studies how Bloom's stream of consciousness unfolds--from his chance encounters with trivial things. Beneath this stream's seeming chaos, Bloom's distinct personality endures, similar to how Joyce's schemas give Ulysses an imbedded, underlying order. The fifth chapter examines how trivial perturbations, such as Lyons' misunderstanding about "Throwaway," produce small crises for Bloom, exacerbating his seeming impotence before his lonely "fate.". The final chapter analyzes Bloom's views that fate and chance dictate his life. His views provide an opportunity to explore the implications chaos theory has for our understanding of free will and determinism. Ultimately

Rising CO2 Levels Will Intensify Phytoplankton Blooms in Eutrophic and Hypertrophic Lakes

Science.gov (United States)

Verspagen, Jolanda M. H.; Van de Waal, Dedmer B.; Finke, Jan F.; Visser, Petra M.; Van Donk, Ellen; Huisman, Jef

2014-01-01

Harmful algal blooms threaten the water quality of many eutrophic and hypertrophic lakes and cause severe ecological and economic damage worldwide. Dense blooms often deplete the dissolved CO2 concentration and raise pH. Yet, quantitative prediction of the feedbacks between phytoplankton growth, CO2 drawdown and the inorganic carbon chemistry of aquatic ecosystems has received surprisingly little attention. Here, we develop a mathematical model to predict dynamic changes in dissolved inorganic carbon (DIC), pH and alkalinity during phytoplankton bloom development. We tested the model in chemostat experiments with the freshwater cyanobacterium Microcystis aeruginosa at different CO2 levels. The experiments showed that dense blooms sequestered large amounts of atmospheric CO2, not only by their own biomass production but also by inducing a high pH and alkalinity that enhanced the capacity for DIC storage in the system. We used the model to explore how phytoplankton blooms of eutrophic waters will respond to rising CO2 levels. The model predicts that (1) dense phytoplankton blooms in low- and moderately alkaline waters can deplete the dissolved CO2 concentration to limiting levels and raise the pH over a relatively wide range of atmospheric CO2 conditions, (2) rising atmospheric CO2 levels will enhance phytoplankton blooms in low- and moderately alkaline waters with high nutrient loads, and (3) above some threshold, rising atmospheric CO2 will alleviate phytoplankton blooms from carbon limitation, resulting in less intense CO2 depletion and a lesser increase in pH. Sensitivity analysis indicated that the model predictions were qualitatively robust. Quantitatively, the predictions were sensitive to variation in lake depth, DIC input and CO2 gas transfer across the air-water interface, but relatively robust to variation in the carbon uptake mechanisms of phytoplankton. In total, these findings warn that rising CO2 levels may result in a marked intensification of

Trophic linkage of a temperate intertidal macrobenthic food web under opportunistic macroalgal blooms: A stable isotope approach

International Nuclear Information System (INIS)

Park, Hyun Je; Han, Eunah; Lee, Young-Jae; Kang, Chang-Keun

2016-01-01

The effects of blooms of opportunistic green macroalgae, Ulva prolifera, on the trophic structure of the macrobenthic food web in a temperate intertidal zone on the western coast of Korea were evaluated using carbon and nitrogen stable isotopes. Biomasses of Ulva and microphytobenthos (MPB) increased significantly at the macroalgae-bloom and the non-bloom sites, respectively, from March to September 2011. The δ 13 C values of most the consumers were arrayed between those of MPB and Ulva at both sites, and differed according to feeding strategies at the macroalgae-bloom site. Seasonally increasing magnitudes in δ 13 C and δ 15 N values of consumers were much steeper at the macroalgae-bloom site than at the non-bloom site. Our findings provide evidence that blooming green macroalgae play a significant role as a basal resource supporting the intertidal macrobenthic food web and their significance varies with feeding strategies of consumers as well as the resource availability. - Highlights: • Trophic effects of Ulva blooms on intertidal macrobenthic food web were evaluated. • Biomasses of Ulva increased at the macroalgae-bloom from March to September. • δ 13 C and δ 15 N values of consumers differed with feeding strategy and season. • Trophic significance of blooming macroalgae varies with feeding strategies of consumers. • Ulva blooms play a significant role as a basal resource supporting the intertidal food web.

Effects of fertilizers used in agricultural fields on algal blooms

DEFF Research Database (Denmark)

Chakraborty, Subhendu; Tiwari, P. K.; Sasmal, S. K.

2017-01-01

of factors and from observation it is difficult to identify the most important one. In the present paper, using a mathematical model we compare the effects of three human induced factors (fertilizer input in agricultural field, eutrophication due to other sources than fertilizers, and overfishing......) on the bloom dynamics and DO level. By applying a sophisticated sensitivity analysis technique, we found that the increasing use of fertilizers in agricultural field causes more rapid algal growth and decreases DO level much faster than eutrophication from other sources and overfishing. We also look...... at the mechanisms how fertilizer input rate affects the algal bloom dynamics and DO level. The model can be helpful for the policy makers in determining the influential factors responsible for the bloom formation....

Evaluation of fatty acids as biomarkers for a natural plankton community. A field study of a spring bloom and a post-bloom period off West Greenland

DEFF Research Database (Denmark)

Reuss, N.; Poulsen, Louise K.

2002-01-01

community were taken at the depth of fluorescence maximum. High biomass and diatom dominance during the spring bloom and low biomass and flagellate dominance in the post-bloom period were reflected by the fatty acid profiles. The total amount of fatty acid ranged from 55 to 132 mug 1(-1) during the spring...

Insights into toxic Prymnesium parvum blooms: the role of sugars and algal viruses.

Science.gov (United States)

Wagstaff, Ben A; Hems, Edward S; Rejzek, Martin; Pratscher, Jennifer; Brooks, Elliot; Kuhaudomlarp, Sakonwan; O'Neill, Ellis C; Donaldson, Matthew I; Lane, Steven; Currie, John; Hindes, Andrew M; Malin, Gill; Murrell, J Colin; Field, Robert A

2018-04-17

Prymnesium parvum is a toxin-producing microalga that causes harmful algal blooms globally, which often result in large-scale fish kills that have severe ecological and economic implications. Although many toxins have previously been isolated from P. parvum , ambiguity still surrounds the responsible ichthyotoxins in P. parvum blooms and the biotic and abiotic factors that promote bloom toxicity. A major fish kill attributed to P. parvum occurred in Spring 2015 on the Norfolk Broads, a low-lying set of channels and lakes (Broads) found on the East of England. Here, we discuss how water samples taken during this bloom have led to diverse scientific advances ranging from toxin analysis to discovery of a new lytic virus of P. parvum , P. parvum DNA virus (PpDNAV-BW1). Taking recent literature into account, we propose key roles for sialic acids in this type of viral infection. Finally, we discuss recent practical detection and management strategies for controlling these devastating blooms. © 2018 The Author(s).

Petal Thicknesses and Shape Transformations in Blooming Lilies

Energy Technology Data Exchange (ETDEWEB)

Portet, Thomas; Holmes, Peter N.; Bowden, Mark E.; Stephens, Sean A.; Varga, Tamas; Keller, Sarah L.

2013-01-29

During blooming, flower petals undergo significant shape changes. For lilies, various different mechanisms responsible for the change have been suggested [1,2]. One is that cell growth along the edge of a petal, or, more generally, a tepal, drives a transition from a cup shape (within a bud) to a saddle shape (within a bloom). This mechanism has been previously considered for tepals modeled as shallow elliptical shells whose thickness from the center, t, falls off at least as fast as t = t0 (1 - x2/a2 - y2/b2 ) [1]. Here t0 is the maximum thickness of the shell, a and b are the semimajor and semiminoraxes, x and y are the coordinates along the longitudinal and lateral axes. By measuring tepal thicknesses from images collected by x-ray tomography of intact buds and by photography of microtomed buds, we find that this condition is indeed met for both Lilium casablanca and Lilium lancifolium. [1] Liang and Mahadevan. Growth, geometry, and mechanics of a blooming lily.

Importance of deep mixing for initiating the North Atlantic spring bloom

DEFF Research Database (Denmark)

Riisgaard, Karen; Paulsen, Maria Lund; Thingstad, T. Frede

The phytoplankton spring bloom is one of the most important recurrent events in the sup-polar part of the Atlantic Ocean. The classical idea is that the bloom is controlled by nutrients and light, but recent observations challenge this hypothesis. During repeated visits to stations in the deep...

Field and laboratory guide to freshwater cyanobacteria harmful algal blooms for Native American and Alaska Native communities

Science.gov (United States)

Rosen, Barry H.; St. Amand, Ann

2015-09-14

Cyanobacteria can produce toxins and form harmful algal blooms. The Native American and Alaska Native communities that are dependent on subsistence fishing have an increased risk of exposure to these cyanotoxins. It is important to recognize the presence of an algal bloom in a waterbody and to distinguish a potentially toxic harmful algal bloom from a non-toxic bloom. This guide provides field images that show cyanobacteria blooms, some of which can be toxin producers, as well as other non-toxic algae blooms and floating plants that might be confused with algae. After recognition of a potential toxin-producing cyanobacterial bloom in the field, the type(s) of cyanobacteria present needs to be identified. Species identification, which requires microscopic examination, may help distinguish a toxin-producer from a non-toxin producer. This guide also provides microscopic images of the common cyanobacteria that are known to produce toxins, as well as images of algae that form blooms but do not produce toxins.

An integrated method for removal of harmful cyanobacterial blooms in eutrophic lakes

International Nuclear Information System (INIS)

Wang Zhicong; Li Dunhai; Qin Hongjie; Li Yinxia

2012-01-01

As the eutrophication of lakes becomes an increasingly widespread phenomenon, cyanobacterial blooms are occurring in many countries. Although some research has been reported, there is currently no good method for bloom removal. We propose here a new two-step integrated approach to resolve this problem. The first step is the inactivation of the cyanobacteria via the addition of H 2 O 2 . We found 60 mg/L was the lowest effective dose for a cyanobacterial concentration corresponding to 100 μg/L chlorophyll-a. The second step is the flocculation and sedimentation of the inactivated cyanobacteria. We found the addition of lake sediment clay (2 g/L) plus polymeric ferric sulfate (20 mg/L) effectively deposited them on the lake bottom. Since algaecides and flocculants had been used separately in previous reports, we innovatively combined these two types of reagents to remove blooms from the lake surface and to improve the dissolved oxygen content of lake sediments. - Graphical abstract: The mechanism for the removal of cyanobacterial blooms by using H 2 O 2 , polymeric ferric sulfate (PFS) and lake sediment clay. Display Omitted Highlights: ► We combined algaecide and flocculants together to control cyanobacterial blooms. ► H 2 O 2 was used to irreversibly inactivate the photosynthesis of cyanobacteria. ► Lake sediment clay and polymeric ferric sulfate were used to deposit cyanobacteria. ► Removal rate was very high and re-suspension rate was very low under disturbance. ► The inactivated cyanobacteria could not serve as a seed source for the next bloom. - Inactivation by H 2 O 2 and sedimentation using polymeric ferric sulfate and sediment clay demonstrated high integrated efficiency in removal of cyanobacterial blooms.

A Preliminary Bloom's Taxonomy Assessment of End-of-Chapter Problems in Business School Textbooks

Science.gov (United States)

Marshall, Jennings B.; Carson, Charles M.

2008-01-01

This article examines textbook problems used in a sampling of some of the most common core courses found in schools of business to ascertain what level of learning, as defined by Bloom's Taxonomy, is required to provide a correct answer. A set of working definitions based on Bloom's Taxonomy (Bloom & Krathwohl, 1956) was developed for the six…

Factors affecting outbreaks of Cochlodinium polykrikoides blooms in coastal areas of Korea

International Nuclear Information System (INIS)

Lee, Young Sik . E-mail leeyodk@hanmail.net; Lee, Sang Yong

2006-01-01

We evaluated the causes of the first outbreak of Cochlodinium polykrikoides blooms in Narodo and the Southern coast of Namhaedo on the South Sea, as well as the outbreak of C. polykrikoides blooms in the East Sea and around Wando. From the results of AGP tests using diverse seawater types, we identified seawaters in which C. polykrikoides grow well and those in which they do not, depending on the sampling time and location. The reason for C. polykrikoides blooms initially occurring in Narodo, Namhaedo, and Gujaedo seems to be because the seawater that promotes the growth of C. polykrikoides is transported to the areas of primary generation, such as these three areas, by the influence of the Tsushima Warm Current. The reason that C. polykrikoides blooms occur in the coastal area of Wando and the East Sea is because after the seawater promoting the growth of C. polykrikoides is transported to these areas, the amount of sun radiation increases, and abundant nutrients flow in from heavy rains, resulting in mass propagation of C. polykrikoides. The origin of the seawater that promotes the growth of C. polykrikoides is assumed to be the southern section of the southern coastal area of Narodo, Namhaedo, and Gujaedo, in which C. polykrikoides blooms were initially discovered. The components of the f/2 medium (N, P, Fe, Mn, Co, Cu, Zn, Mo, B12, biotin, thiamine) do not seem to trigger the occurrence of C. polykrikoides blooms

Aldehyde suppression of copepod recruitment in blooms of a ubiquitous planktonic diatom

Science.gov (United States)

Ianora, Adrianna; Miralto, Antonio; Poulet, Serge A.; Carotenuto, Ylenia; Buttino, Isabella; Romano, Giovanna; Casotti, Raffaella; Pohnert, Georg; Wichard, Thomas; Colucci-D'Amato, Luca; Terrazzano, Giuseppe; Smetacek, Victor

2004-05-01

The growth cycle in nutrient-rich, aquatic environments starts with a diatom bloom that ends in mass sinking of ungrazed cells and phytodetritus. The low grazing pressure on these blooms has been attributed to the inability of overwintering copepod populations to track them temporally. We tested an alternative explanation: that dominant diatom species impair the reproductive success of their grazers. We compared larval development of a common overwintering copepod fed on a ubiquitous, early-blooming diatom species with its development when fed on a typical post-bloom dinoflagellate. Development was arrested in all larvae in which both mothers and their larvae were fed the diatom diet. Mortality remained high even if larvae were switched to the dinoflagellate diet. Aldehydes, cleaved from a fatty acid precursor by enzymes activated within seconds after crushing of the cell, elicit the teratogenic effect. This insidious mechanism, which does not deter the herbivore from feeding but impairs its recruitment, will restrain the cohort size of the next generation of early-rising overwinterers. Such a transgenerational plant-herbivore interaction could explain the recurringly inefficient use of a predictable, potentially valuable food resource-the spring diatom bloom-by marine zooplankton.

Retrieved bacteria from Noctiluca miliaris (green) bloom of the northeastern Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Basu, S.; Matondkar, S.G.P.; Furtado, I.

In recent years, seasonal blooms of the dinoflagellate Noctiluca miliaris have appeared in the open-waters of the northern Arabian Sea (NAS). This study provides the first characterization of bacteria from a seasonal bloom of green Noctiluca of NAS...

Cyanobacterial blooms in lake Atitlan, Guatemala

Czech Academy of Sciences Publication Activity Database

Rejmánková, E.; Komárek, Jiří; Dix, M.; Komárková, Jaroslava; Girón, N.

2011-01-01

Roč. 41, č. 4 (2011), s. 296-302 ISSN 0075-9511 Institutional research plan: CEZ:AV0Z60050516; CEZ:AV0Z60170517 Keywords : water blooms * plancton * Guatemala Subject RIV: EH - Ecology, Behaviour Impact factor: 1.527, year: 2011

After effects of a dinoflagellate bloom on the hard bottom community in Kalpakkam coastal waters

International Nuclear Information System (INIS)

Sasikumar, N.; Azariah, J.; Venugopalan, V.P.; Nair, K.V.K.

1989-01-01

A bloom of the dinoflagellate, Noctiluca scintillans (Macartney) was observed in Kalpakkam coastal waters during the second and third week of October, 1988. Associated with the incidence of the bloom, signficant variations in the distribution of intertidal hard bottom communities were observed. Considerable difference in the dissolved oxygen content was also recorded during the bloom period. A sudden disapperance of grazers like limpets was observed after the onset of the bloom. Subsequent to this, there was a recolonization process, which showed a regular succession. Following limpet disappearance there was a rapid 'greening' of the surface by Enteromorpha Later, Dictyota dichotoma excluded Enteromorpha. Experimental teak wood panels also showed a decline in cy prid settlement during the bloom. (author). 3 tabs., 19 refs

Occurrence of toxin-producing cyanobacteria blooms in a Brazilian semiarid reservoir

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I. A. S. Costa

Full Text Available We report the occurrence of cyanobacterial blooms and the presence of cyanotoxins in water samples from the Armando Ribeiro Gonçalves reservoir (06° 08’ S and 37° 07’ W, located in the state of Rio Grande do Norte, in the semiarid region of northeastern Brazil. The cyanobacterial species were identified and quantified during the rainy and dry seasons in the year 2000. Cyanotoxins such as microcystins, saxitoxins and cylindrospermopsins were analyzed and quantified using HPLC and ELISA methods. The mixed toxic blooms of Cylindrospermopsis raciborskii, Microcystis spp (M. panniformis, M. protocystis, M. novacekii and Aphanizomenon spp (Aphanizomenon gracile, A. cf. manguinii, A. cf. issastschenkoi were persistent and represented 90-100% of the total phytoplankton species. Toxic cyanobacterial blooms from the Armando Ribeiro Gonçalves reservoir were analyzed and found to have three phases in relation to the annual cycle. During the rainy season, an intense toxic bloom of Cylindrospermopsis raciborskii was recorded along with saxitoxins (3.14 µg.L-1. During the transition period, between the rainy and dry seasons, different species of Microscytis occurred and microcystin as high as 8.8 µg.L-1 was recorded. In the dry season, co-dominance of Cylindrospermopsis raciborskii, Microcystis spp and Aphanizomenon spp occurred and the concentrations of saxitoxin remained very low. Our results indicate the presence of microcystins (8.8 µg.L-1 and saxitoxins (3.14 µg.L-1 into the crude water, with increasing concentrations from the second fortnight of April to late May 2000. The occurrence of toxic blooms in this reservoir points to a permanent risk of cyanotoxins in supply waters, indicating the need for the implementation of bloom control measures to improve the water quality. Exposure of the local population to cyanotoxins through their potential accumulation in fish muscle must also be considered.

State of knowledge and concerns on cyanobacterial blooms and cyanotoxins.

OpenAIRE

Merel , Sylvain; Walker , David; Chicana , Ruth; Snyder , Shane; Baurès , Estelle; Thomas , Olivier

2013-01-01

International audience; Cyanobacteria are ubiquitous microorganisms considered as important contributors to the formation of Earth's atmosphere and nitrogen fixation. However, they are also frequently associated with toxic blooms. Indeed, the wide range of hepatotoxins, neurotoxins and dermatotoxins synthesized by these bacteria is a growing environmental and public health concern. This paper provides a state of the art on the occurrence and management of harmful cyanobacterial blooms in surf...

Allan Bloom, America, and Education.

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West, Thomas

2000-01-01

Refutes the claims of Allan Bloom that the source of the problem with today's universities is modern philosophy, that the writings and ideas of Hobbes and Locke planted the seeds of relativism in American culture, and that the cure is Great Books education. Suggests instead that America's founding principles are the only solution to the failure of…

Dynamic Changes in Bacterial Population and Corresponding Exoenzyme Activity in Response to a Tropical Phytoplankton Bloom Chattonella marina

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Anit M. Thomas

2014-01-01

Full Text Available The raphidophyte Chattonella marina (Subrahmanyan Hara & Chihara bloom which causes lethal effects on marine ecosystem has been reported intermittently from Indian waters. In the present study, periodic samplings were made in a Chattonella marina bloom area, off Mahe, on 27 and 29 October and 1 November 2011 (in different phases of the bloom to assess the associated bacterial population and their exoenzyme activity. Microbial community composition of Chattonella marina bloom revealed a twentyfold increase in bacterial load over the nonbloom area. The bacterial genera, Micrococcus, Flavobacterium, Vibrio, and Pseudomonas, increased significantly during the declining phase of the bloom. An assessment of the extracellular enzyme production also showed a marked increase in percentage of bacterial strains, potent in protease production, suggesting the possible role of proteolytic bacteria in bloom crash. This study reveals the bacterial community succession during the bloom and indicates that bacteria play an important role in bloom regulation.

Challenges in modeling spatiotemporally varying phytoplankton blooms in the Northwestern Arabian Sea and Gulf of Oman

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Sedigh Marvasti, S.; Gnanadesikan, A.; Bidokhti, A. A.; Dunne, J. P.; Ghader, S.

2016-02-01

Recent years have shown an increase in harmful algal blooms in the Northwest Arabian Sea and Gulf of Oman, raising the question of whether climate change will accelerate this trend. This has led us to examine whether the Earth System Models used to simulate phytoplankton productivity accurately capture bloom dynamics in this region - both in terms of the annual cycle and interannual variability. Satellite data (SeaWIFS ocean color) show two climatological blooms in this region, a wintertime bloom peaking in February and a summertime bloom peaking in September. On a regional scale, interannual variability of the wintertime bloom is dominated by cyclonic eddies which vary in location from one year to another. Two coarse (1°) models with the relatively complex biogeochemistry (TOPAZ) capture the annual cycle but neither eddies nor the interannual variability. An eddy-resolving model (GFDL CM2.6) with a simpler biogeochemistry (miniBLING) displays larger interannual variability, but overestimates the wintertime bloom and captures eddy-bloom coupling in the south but not in the north. The models fail to capture both the magnitude of the wintertime bloom and its modulation by eddies in part because of their failure to capture the observed sharp thermocline and/or nutricline in this region. When CM2.6 is able to capture such features in the Southern part of the basin, eddies modulate diffusive nutrient supply to the surface (a mechanism not previously emphasized in the literature). For the model to simulate the observed wintertime blooms within cyclones, it will be necessary to represent this relatively unusual nutrient structure as well as the cyclonic eddies. This is a challenge in the Northern Arabian Sea as it requires capturing the details of the outflow from the Persian Gulf - something that is poorly done in global models.

Challenges in modelling spatiotemporally varying phytoplankton blooms in the Northwestern Arabian Sea and Gulf of Oman

Science.gov (United States)

Sedigh Marvasti, S.; Gnanadesikan, A.; Bidokhti, A. A.; Dunne, J. P.; Ghader, S.

2015-07-01

We examine interannual variability of phytoplankton blooms in northwestern Arabian Sea and Gulf of Oman. Satellite data (SeaWIFS ocean color) shows two climatological blooms in this region, a wintertime bloom peaking in February and a summertime bloom peaking in September. A pronounced anti-correlation between the AVISO sea surface height anomaly (SSHA) and chlorophyll is found during the wintertime bloom. On a regional scale, interannual variability of the wintertime bloom is thus dominated by cyclonic eddies which vary in location from one year to another. These results were compared against the outputs from three different 3-D Earth System models. We show that two coarse (1°) models with the relatively complex biogeochemistry (TOPAZ) capture the annual cycle but neither eddies nor the interannual variability. An eddy-resolving model (GFDL CM2.6) with a simpler biogeochemistry (miniBLING) displays larger interannual variability, but overestimates the wintertime bloom and captures eddy-bloom coupling in the south but not in the north. The southern part of the domain is a region with a much sharper thermocline and nutricline relatively close to the surface, in which eddies modulate diffusive nutrient supply to the surface (a mechanism not previously emphasized in the literature). We suggest that for the model to simulate the observed wintertime blooms within cyclones, it will be necessary to represent this relatively unusual nutrient structure as well as the cyclonic eddies. This is a challenge in the Northern Arabian Sea as it requires capturing the details of the outflow from the Persian Gulf.

Analysis of algal bloom risk with uncertainties in lakes by integrating self-organizing map and fuzzy information theory.

Science.gov (United States)

Chen, Qiuwen; Rui, Han; Li, Weifeng; Zhang, Yanhui

2014-06-01

Algal blooms are a serious problem in waters, which damage aquatic ecosystems and threaten drinking water safety. However, the outbreak mechanism of algal blooms is very complex with great uncertainty, especially for large water bodies where environmental conditions have obvious variation in both space and time. This study developed an innovative method which integrated a self-organizing map (SOM) and fuzzy information diffusion theory to comprehensively analyze algal bloom risks with uncertainties. The Lake Taihu was taken as study case and the long-term (2004-2010) on-site monitoring data were used. The results showed that algal blooms in Taihu Lake were classified into four categories and exhibited obvious spatial-temporal patterns. The lake was mainly characterized by moderate bloom but had high uncertainty, whereas severe blooms with low uncertainty were observed in the northwest part of the lake. The study gives insight on the spatial-temporal dynamics of algal blooms, and should help government and decision-makers outline policies and practices on bloom monitoring and prevention. The developed method provides a promising approach to estimate algal bloom risks under uncertainties. Copyright © 2014 Elsevier B.V. All rights reserved.

The impacts of a massive harmful algal bloom along the US west coast in 2015

Science.gov (United States)

Kudela, R. M.; Trainer, V. L.; McCabe, R. M.; Hickey, B. M.; Negrey, K.

2016-02-01

In 2015, a massive bloom of the marine diatom Pseudo-nitzschia, stretching from southern California to southern Alaska, resulted in significant impacts to coastal resources and marine life. This bloom was first detected in early May 2015, when Washington closed its scheduled razor clam digs on coastal beaches. It is the largest and longest-lasting bloom in at least the past 15 years, and concentrations of domoic acid in seawater, some forage fish, and crab samples have been among the highest ever reported for this region. By mid-May, domoic acid concentrations in Monterey Bay, California were 10 to 30 times the level that would be considered high for a normal Pseudo-nitzschia bloom. Impacts to coastal communities and marine life include shellfish and Dungeness crab closures in multiple states, impacting commercial, recreational and subsistence harvesters, anchovy and sardine fishery health advisories in some areas of California, and sea lion strandings in California and Washington. Other marine mammal and bird mortalities have been reported in multiple states, and domoic acid poisoning is a suspected cause. In addition to the spatial extent and toxicity, the bloom has also lasted for many months (ongoing as of September 2015). While the exact causes of the bloom's severity and early onset are not yet known, unusually warm surface water in the Pacific Ocean may be a contributing factor. Here we present an overview of the bloom dynamics and impacts, and preliminary analysis about the bloom initiation and relationship to unusual ocean conditions in 2014-2015.

Climbing Bloom's Taxonomy Pyramid: Lessons from a Graduate Histology Course

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Zaidi, Nikki B.; Hwang, Charles; Scott, Sara; Stallard, Stefanie; Purkiss, Joel; Hortsch, Michael

2017-01-01

Bloom's taxonomy was adopted to create a subject-specific scoring tool for histology multiple-choice questions (MCQs). This Bloom's Taxonomy Histology Tool (BTHT) was used to analyze teacher- and student-generated quiz and examination questions from a graduate level histology course. Multiple-choice questions using histological images were…

Peculiarities of the Woody Plants Re-Bloom

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Opalko Olga Anatolievna

2015-09-01

Full Text Available The data of literary sources concerning the bloom of angiosperm plants and deviation in the development of a flower and inflorescence, in particular untimely flowering, was generalized; our observation results of some peculiarities of re-bloom of woody plants in the National Dendrological Park “Sofiyivka” of NAS of Ukraine (NDP “Sofiyivka” were discussed. The flowering process was formed during a long-term evolution of a propagation system of angiosperm plants as a basis of fertilization and further fruit and seed development. As a result of vernalization and photoperiodism reactions, flowering (under regular conditions occurs in the most favorable period for pollination and fertilization of every plant. However, various deviations, in particular, the untimely (most frequently double, sometimes three- and four-fold flowering occurs in this perfect process of generative organ formation of angiosperm plants. An increased number of reports about re-bloom (at the end of summer – at the beginning of fall of the representatives of various woody plant species whose flowers usually blossom in May-June prompts the analysis of the available information concerning the mechanisms of flowering and the causes which lead to deviation of flowering processes. Flowering of the woody plant representatives of the collection fund of the NDP “Sofiyivka” was studied; statistics about re-bloom in different cities of Ukraine were monitored. The classification of re-bloom facts was carried out according to V.L. Vitkovskiy (1984. Although this classification has mostly a stated nature, it was good enough when being formulated and, with certain conditions, it can be applied nowadays. Accordingly, using this classification, abnormal cases can include facts of early summer-fall flowering and early winter flowering. A late spring flowering can be adaptive response of damaged plants to exogenous stresses, due to which the probability of sexual propagation remains

Site fidelity by bees drives pollination facilitation in sequentially blooming plant species.

Science.gov (United States)

Ogilvie, Jane E; Thomson, James D

2016-06-01

Plant species can influence the pollination and reproductive success of coflowering neighbors that share pollinators. Because some individual pollinators habitually forage in particular areas, it is also possible that plant species could influence the pollination of neighbors that bloom later. When flowers of a preferred forage plant decline in an area, site-fidelity may cause individual flower feeders to stay in an area and switch plant species rather than search for preferred plants in a new location. A newly blooming plant species may quickly inherit a set of visitors from a prior plant species, and therefore experience higher pollination success than it would in an area where the first species never bloomed. To test this, we manipulated the placement and timing of two plant species, Delphinium barbeyi and later-blooming Gentiana parryi. We recorded the responses of individually marked bumble bee pollinators. About 63% of marked individuals returned repeatedly to the same areas to forage on Delphinium. When Delphinium was experimentally taken out of bloom, most of those site-faithful individuals (78%) stayed and switched to Gentiana. Consequently, Gentiana flowers received more visits in areas where Delphinium had previously flowered, compared to areas where Delphinium was still flowering or never occurred. Gentiana stigmas received more pollen in areas where Delphinium disappeared than where it never bloomed, indicating that Delphinium increases the pollination of Gentiana when they are separated in time. Overall, we show that individual bumble bees are often site-faithful, causing one plant species to increase the pollination of another even when separated in time, which is a novel mechanism of pollination facilitation.

Spatio-temporal interdependence of bacteria and phytoplankton during a Baltic Sea spring bloom

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Carina eBunse

2016-04-01

Full Text Available In temperate systems, phytoplankton spring blooms deplete inorganic nutrients and are major sources of organic matter for the microbial loop. In response to phytoplankton exudates and environmental factors, heterotrophic microbial communities are highly dynamic and change their abundance and composition both on spatial and temporal scales. Yet, most of our understanding about these processes comes from laboratory model organism studies, mesocosm experiments or single temporal transects. Spatial-temporal studies examining interactions of phytoplankton blooms and bacterioplankton community composition and function, though being highly informative, are scarce. In this study, pelagic microbial community dynamics (bacteria and phytoplankton and environmental variables were monitored during a spring bloom across the Baltic Proper (two cruises between North Germany to Gulf of Finland. To test to what extent bacterioplankton community composition relates to the spring bloom, we used next generation amplicon sequencing of the 16S rRNA gene, phytoplankton diversity analysis based on microscopy counts and population genotyping of the dominating diatom Skeletonema marinoi. Several phytoplankton bloom related and environmental variables were identified to influence bacterial community composition. Members of Bacteroidetes and Alphaproteobacteria dominated the bacterial community composition but the bacterial groups showed no apparent correlation with direct bloom related variables. The less abundant bacterial phyla Actinobacteria, Planctomycetes, and Verrucomicrobia, on the other hand, were strongly associated with phytoplankton biomass, diatom:dinoflagellate ratio and colored dissolved organic matter (cDOM. Many bacterial operational taxonomic units (OTUs showed high niche specificities. For example, particular Bacteroidetes OTUs were associated with two distinct genetic clusters of S. marinoi. Our study revealed the complexity of interactions of bacterial

Diversity and dynamics of a widespread bloom of the toxic dinoflagellate Alexandrium fundyense.

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Deana L Erdner

Full Text Available Historically, cosmopolitan phytoplankton species were presumed to represent largely unstructured populations. However, the recent development of molecular tools to examine genetic diversity have revealed differences in phytoplankton taxa across geographic scales and provided insight into the physiology and ecology of blooms. Here we describe the genetic analysis of an extensive bloom of the toxic dinoflagellate Alexandrium fundyense that occurred in the Gulf of Maine in 2005. This bloom was notable for its intensity and duration, covering hundreds of kilometers and persisting for almost two months. Genotypic analyses based on microsatellite marker data indicate that the open waters of the northeastern U.S. harbor a single regional population of A. fundyense comprising two genetically distinct sub-populations. These subpopulations were characteristic of early- and late-bloom samples and were derived from the northern and southern areas of the bloom, respectively. The temporal changes observed during this study provide clear evidence of succession during a continuous bloom and show that selection can act on the timescale of weeks to significantly alter the representation of genotypes within a population. The effects of selection on population composition and turnover would be magnified if sexual reproduction were likewise influenced by environmental conditions. We hypothesize that the combined effects of differential growth and reproduction rates serves to reduce gene flow between the sub-populations, reinforcing population structure while maintaining the diversity of the overall regional population.

Great Lakes Hyperspectral Water Quality Instrument Suite for Airborne Monitoring of Algal Blooms

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Lekki, John; Leshkevich, George; Nguyen, Quang-Viet; Flatico, Joseph; Prokop, Norman; Kojima, Jun; Anderson, Robert; Demers, James; Krasowski, Michael

2007-01-01

NASA Glenn Research Center and NOAA Great Lakes Environmental Research Lab are collaborating to utilize an airborne hyperspectral imaging sensor suite to monitor Harmful Algal Blooms (HABs) in the western basin of Lake Erie. The HABs are very dynamic events as they form, spread and then disappear within a 4 to 8 week time period in late summer. They are a concern for human health, fish and wildlife because they can contain blue green toxic algae. Because of this toxicity there is a need for the blooms to be continually monitored. This situation is well suited for aircraft based monitoring because the blooms are a very dynamic event and they can spread over a large area. High resolution satellite data is not suitable by itself because it will not give the temporal resolution due to the infrequent overpasses of the quickly changing blooms. A custom designed hyperspectral imager and a point spectrometer mounted on aT 34 aircraft have been used to obtain data on an algal bloom that formed in the western basin of Lake Erie during September 2006. The sensor suite and operations will be described and preliminary hyperspectral data of this event will be presented

Influence of Late Quaternary depositional environments on the structure of nannofossil assemblages in the Titanic area (northwestern Atlantic)

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Dmitrenko, O. B.

2012-02-01

The nannofosssil assemblages have been analyzed in five cores taken from the Titanic area of the northwestern Atlantic (˜41°-42° N, ˜47°-50° W, water depths >3500 m) during cruises 41 and 43 of the R/V Akademik Mstislav Keldysh in 1998 and 2000. They correlate the host sediments with the upper Pleistocene-Holocene Emiliania huxleyi zone. The changes in the structure of the nannofossil assemblages and the lithological characteristics such as the content of biogenic CaCO3, the abundance of ice-rafted debris, and the grain-size composition were used for the high-resolution stratigraphy of sections with defining marine isotopic stages 1-3 of the last 24 kyr. A characteristic feature of the nannofossil assemblages from this area is their enrichment with the cold-resistant species Coccolthus pelagicus during the warm climatic stages and the lack of allochthonous coccolitophorid remains.

Magneto-optical properties of biogenic photonic crystals in algae

International Nuclear Information System (INIS)

Iwasaka, M.; Mizukawa, Y.

2014-01-01

In the present study, the effects of strong static magnetic fields on the structural colors of the cell covering crystals on a microalgae, coccolithophore, were investigated. The coccolithophore, Emiliania huxleyi, generates a precise assembly of calcite crystals called coccoliths by biomineralization. The coccoliths attached to the cells exhibited structural colors under side light illumination, and the colors underwent dynamic transitions when the magnetic fields were changed between 0 T and 5 T, probably due to diamagnetically induced changes of their inclination under the magnetic fields. The specific light-scattering property of individual coccoliths separated from the cells was also observed. Light scattering from a condensed suspension of coccoliths drastically decreased when magnetic fields of more than 4 T were applied parallel to the direction of observation. The magnetically aligned cell-covering crystals of the coccolithophores exhibited the properties of both a photonic crystal and a minimum micromirror

Detecting the Killer Toxin (Harmful Algal Blooms)

International Nuclear Information System (INIS)

Quevenco, Rodolfo

2011-01-01

IAEA is stepping up efforts to help countries understand the phenomenon and use more reliable methods for early detection and monitoring so as to limit harmful algal blooms (HABs) adverse effects on coastal communities everywhere.

Physical control of interannual variations of the winter chlorophyll bloom in the northern Arabian Sea

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M. G. Keerthi

2017-08-01

Full Text Available The northern Arabian Sea hosts a winter chlorophyll bloom, triggered by convective overturning in response to cold and dry northeasterly monsoon winds. Previous studies of interannual variations of this bloom only relied on a couple of years of data and reached no consensus on the associated processes. The current study aims at identifying these processes using both  ∼  10 years of observations (including remotely sensed chlorophyll data and physical parameters derived from Argo data and a 20-year-long coupled biophysical ocean model simulation. Despite discrepancies in the estimated bloom amplitude, the six different remotely sensed chlorophyll products analysed in this study display a good phase agreement at seasonal and interannual timescales. The model and observations both indicate that the interannual winter bloom fluctuations are strongly tied to interannual mixed layer depth anomalies ( ∼  0.6 to 0.7 correlation, which are themselves controlled by the net heat flux at the air–sea interface. Our modelling results suggest that the mixed layer depth control of the bloom amplitude ensues from the modulation of nutrient entrainment into the euphotic layer. In contrast, the model and observations both display insignificant correlations between the bloom amplitude and thermocline depth, which precludes a control of the bloom amplitude by daily dilution down to the thermocline depth, as suggested in a previous study.

Impact of multispecies diatom bloom on plankton community structure in Sundarban mangrove wetland, India

International Nuclear Information System (INIS)

Biswas, Sejuti Naha; Rakshit, Dibyendu; Sarkar, Santosh Kumar; Sarangi, Ranjit Kumar; Satpathy, Kamala Kanta

2014-01-01

Highlights: • A multispecies algal bloom was studied in coastal regions of Sundarban wetland. • Sharp changes in plankton community structure and hydrological parameters observed. • Chlorophyll a showed highest cell density (11.4 × 10 5 cells l −1 ) during bloom phase. • MODIS Aqua derived chlorophyll maps have been interpreted. - Abstract: A multispecies bloom caused by the centric diatoms, viz. Coscinodiscus radiatus, Chaetoceros lorenzianus and the pennate diatom Thalassiothrix frauenfeldii was investigated in the context of its impact on phytoplankton and microzooplankton (the loricate ciliate tintinnids) in the coastal regions of Sagar Island, the western part of Sundarban mangrove wetland, India. Both number (15–18 species) and cell densities (12.3 × 10 3 cells l −1 to 11.4 × 10 5 cells l −1 ) of phytoplankton species increased during peak bloom phase, exhibiting moderately high species diversity (H′ = 2.86), richness (R′ = 6.38) and evenness (E′ = 0.80). The diatom bloom, which existed for a week, had a negative impact on the tintinnid community in terms of drastic changes in species diversity index (1.09–0.004) and population density (582.5 × 10 3 to 50 × 10 3 ind m −3 ). The bloom is suggested to have been driven by the aquaculture activities and river effluents resulting high nutrient concentrations in this region. An attempt has been made to correlate the satellite remote sensing-derived information to the bloom conditions. MODIS-Aqua derived chlorophyll maps have been interpreted

Economic Cost of an Algae Bloom Cleanup in China's 2008 Olympic Sailing Venue

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Wang, X. H.; Li, L.; Bao, X.; Zhao, L. D.

2009-07-01

In the summer of 2008, an algae bloom struck the coast of Qingdao, China, where the 2008 Olympic sailing events were to be held. The bloom was caused by the drift and proliferation of the green algae Enteromorpha (see http://precedings.nature.com/documents/2352/version/1). It lasted for more than 1 month and covered nearly the entire sailing venue. The Enteromorpha bloom was so intense that national and local governments invested a tremendous amount of labor and resources in a cleanup effort in order to achieve Olympic Games standards [Hu and He, 2008].

Under Sea Ice phytoplankton bloom detection and contamination in Antarctica

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Zeng, C.; Zeng, T.; Xu, H.

2017-12-01

Previous researches reported compelling sea ice phytoplankton bloom in Arctic, while seldom reports studied about Antarctic. Here, lab experiment showed sea ice increased the visible light albedo of the water leaving radiance. Even a new formed sea ice of 10cm thickness increased water leaving radiance up to 4 times of its original bare water. Given that phytoplankton preferred growing and accumulating under the sea ice with thickness of 10cm-1m, our results showed that the changing rate of OC4 estimated [Chl-a] varied from 0.01-0.5mg/m3 to 0.2-0.3mg/m3, if the water covered by 10cm sea ice. Going further, varying thickness of sea ice modulated the changing rate of estimating [Chl-a] non-linearly, thus current routine OC4 model cannot estimate under sea ice [Chl-a] appropriately. Besides, marginal sea ice zone has a large amount of mixture regions containing sea ice, water and snow, where is favorable for phytoplankton. We applied 6S model to estimate the sea ice/snow contamination on sub-pixel water leaving radiance of 4.25km spatial resolution ocean color products. Results showed that sea ice/snow scale effectiveness overestimated [Chl-a] concentration based on routine band ratio OC4 model, which contamination increased with the rising fraction of sea ice/snow within one pixel. Finally, we analyzed the under sea ice bloom in Antarctica based on the [Chl-a] concentration trends during 21 days after sea ice retreating. Regardless of those overestimation caused by sea ice/snow sub scale contamination, we still did not see significant under sea ice blooms in Antarctica in 2012-2017 compared with Arctic. This research found that Southern Ocean is not favorable for under sea ice blooms and the phytoplankton bloom preferred to occur in at least 3 weeks after sea ice retreating.

State of knowledge and concerns on cyanobacterial blooms and cyanotoxins.

Science.gov (United States)

Merel, Sylvain; Walker, David; Chicana, Ruth; Snyder, Shane; Baurès, Estelle; Thomas, Olivier

2013-09-01

Cyanobacteria are ubiquitous microorganisms considered as important contributors to the formation of Earth's atmosphere and nitrogen fixation. However, they are also frequently associated with toxic blooms. Indeed, the wide range of hepatotoxins, neurotoxins and dermatotoxins synthesized by these bacteria is a growing environmental and public health concern. This paper provides a state of the art on the occurrence and management of harmful cyanobacterial blooms in surface and drinking water, including economic impacts and research needs. Cyanobacterial blooms usually occur according to a combination of environmental factors e.g., nutrient concentration, water temperature, light intensity, salinity, water movement, stagnation and residence time, as well as several other variables. These environmental variables, in turn, have promoted the evolution and biosynthesis of strain-specific, gene-controlled metabolites (cyanotoxins) that are often harmful to aquatic and terrestrial life, including humans. Cyanotoxins are primarily produced intracellularly during the exponential growth phase. Release of toxins into water can occur during cell death or senescence but can also be due to evolutionary-derived or environmentally-mediated circumstances such as allelopathy or relatively sudden nutrient limitation. Consequently, when cyanobacterial blooms occur in drinking water resources, treatment has to remove both cyanobacteria (avoiding cell lysis and subsequent toxin release) and aqueous cyanotoxins previously released. Cells are usually removed with limited lysis by physical processes such as clarification or membrane filtration. However, aqueous toxins are usually removed by both physical retention, through adsorption on activated carbon or reverse osmosis, and chemical oxidation, through ozonation or chlorination. While the efficient oxidation of the more common cyanotoxins (microcystin, cylindrospermopsin, anatoxin and saxitoxin) has been extensively reported, the chemical

Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom

Science.gov (United States)

Rosen, Barry H.; Davis, Timothy W.; Gobler, Christopher J.; Kramer, Benjamin J.; Loftin, Keith A.

2017-05-31

The Lake Okeechobee and the Okeechobee Waterway (Lake Okeechobee, the St. Lucie Canal and River, and the Caloosahatchee River) experienced an extensive harmful algal bloom within Lake Okeechobee, the St. Lucie Canal and River and the Caloosahatchee River in 2016. In addition to the very visible bloom of the cyanobacterium Microcystis aeruginosa, several other cyanobacteria were present. These other species were less conspicuous; however, they have the potential to produce a variety of cyanotoxins, including anatoxins, cylindrospermopsins, and saxitoxins, in addition to the microcystins commonly associated with Microcystis. Some of these species were found before, during, and 2 weeks after the large Microcystis bloom and could provide a better understanding of bloom dynamics and succession. This report provides photographic documentation and taxonomic assessment of the cyanobacteria present from Lake Okeechobee and the Caloosahatchee River and St. Lucie Canal, with samples collected June 1st from the Caloosahatchee River and Lake Okeechobee and in July from the St. Lucie Canal. The majority of the images were of live organisms, allowing their natural complement of pigmentation to be captured. The report provides a digital image-based taxonomic record of the Lake Okeechobee and the Okeechobee Waterway microscopic flora. It is anticipated that these images will facilitate current and future studies on this system, such as understanding the timing of cyanobacteria blooms and their potential toxin production.

Mesoscale Eddies Control the Timing of Spring Phytoplankton Blooms: A Case Study in the Japan Sea

Science.gov (United States)

Maúre, E. R.; Ishizaka, J.; Sukigara, C.; Mino, Y.; Aiki, H.; Matsuno, T.; Tomita, H.; Goes, J. I.; Gomes, H. R.

2017-11-01

Satellite Chlorophyll a (CHL) data were used to investigate the influence of mesoscale anticyclonic eddies (AEs) and cyclonic eddies (CEs) on the timing of spring phytoplankton bloom initiation around the Yamato Basin (133-139°E and 35-39.5°N) in the Japan Sea, for the period 2002-2011. The results showed significant differences between AEs and CEs in the timing and initiation mechanism of the spring phytoplankton bloom. Blooms were initiated earlier in CEs which were characterized by shallow mixed-layer depths (mixed-layer depth. Conversely, blooms appeared in the AEs despite deeper mixed-layer depth (> 100 m) but close to the commencement of positive Q0. This suggests that the relaxation of turbulent mixing is crucial for the bloom initiation in AEs.

Physical and biological data collected along the Texas, Mississippi, and Florida Gulf coasts in the Gulf of Mexico as part of the Harmful Algal BloomS Observing System from 19 Aug 1953 to 11 July 2014 (NODC Accession 0120767)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — HABSOS (Harmful Algal BloomS Observing System) is a data collection and distribution system for harmful algal bloom (HAB) information in the Gulf of Mexico. The goal...

Fungal parasitism: life cycle, dynamics and impact on cyanobacterial blooms.

Directory of Open Access Journals (Sweden)

Mélanie Gerphagnon

Full Text Available Many species of phytoplankton are susceptible to parasitism by fungi from the phylum Chytridiomycota (i.e. chytrids. However, few studies have reported the effects of fungal parasites on filamentous cyanobacterial blooms. To investigate the missing components of bloom ecosystems, we examined an entire field bloom of the cyanobacterium Anabaena macrospora for evidence of chytrid infection in a productive freshwater lake, using a high resolution sampling strategy. A. macrospora was infected by two species of the genus Rhizosiphon which have similar life cycles but differed in their infective regimes depending on the cellular niches offered by their host. R. crassum infected both vegetative cells and akinetes while R. akinetum infected only akinetes. A tentative reconstruction of the developmental stages suggested that the life cycle of R. crassum was completed in about 3 days. The infection affected 6% of total cells (and 4% of akinètes, spread over a maximum of 17% of the filaments of cyanobacteria, in which 60% of the cells could be parasitized. Furthermore, chytrids may reduce the length of filaments of Anabaena macrospora significantly by "mechanistic fragmentation" following infection. All these results suggest that chytrid parasitism is one of the driving factors involved in the decline of a cyanobacteria blooms, by direct mortality of parasitized cells and indirectly by the mechanistic fragmentation, which could weaken the resistance of A. macrospora to grazing.

The 1987–1989 Phytoplankton Bloom in Kaneohe Bay

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Edward Laws

2018-06-01

Full Text Available A remarkable bloom of phytoplankton occurred in the southeast sector (SE of Kaneohe Bay from 1987 through 1989. During the bloom, concentrations of chlorophyll a at the former site of the Kaneohe municipal wastewater treatment plant outfall averaged a little more than 2 mg m–3 for a period of 40 months. The increase of chl a was accompanied by a roughly twofold increase in the percentage of chl a accounted for by cells retained on a 35-micron filter, a drawdown of silicate concentrations from roughly 10 μM to 3–4 μM, an increase of nitrate concentrations from roughly 0.5 to more than 3 μM, and an increase of phosphate concentrations from roughly 0.2 to 0.5 μM. Extraordinarily heavy rains on 31 December 1987 led to flooding and land runoff that briefly raised chl a concentrations in the bay to as high as 17 mg m–3, but the bloom in question developed more than one year before the 1987 New Year’s Eve flood. It was not caused by unusually heavy rainfall: the average rainfall during 1987–1989 was only 10% above the long-term average. Instead, the bloom appears to have been caused by a leak in the sanitary sewer line that was previously used to discharge secondary treated sewage into Kaneohe Bay. Ultimately, leaks in the sanitary sewer lines maintained by the City and County of Honolulu led to legal action and a consent decree that required upgrading and the renovation of the wastewater collection system.

Trichodesmium blooms and warm-core ocean surface features in the Arabian Sea and the Bay of Bengal.

Science.gov (United States)

Jyothibabu, R; Karnan, C; Jagadeesan, L; Arunpandi, N; Pandiarajan, R S; Muraleedharan, K R; Balachandran, K K

2017-08-15

Trichodesmium is a bloom-forming, diazotrophic, non-heterocystous cyanobacteria widely distributed in the warmer oceans, and their bloom is considered a 'biological indication' of stratification and nitrogen limitation in the ocean surface layer. In the first part of this paper, based on the retrospective analyses of the ocean surface mesoscale features associated with 59 Trichodesmium bloom incidences recorded in the past, 32 from the Arabian Sea and the Bay of Bengal, and 27 from the rest of the world, we have showed that warm-core features have an inducing effect on bloom formation. In the second part, we have considered the environmental preferences of Trichodesmium bloom based on laboratory and field studies across the globe, and proposed a view about how warm-core features could provide an inducing pre-requisite condition for the bloom formation in the Arabian Sea and the Bay of Bengal. Proposed that the subsurface waters of warm-core features maintain more likely chances for the conducive nutrient and light conditions required for the triggering of the blooms. Copyright © 2017 Elsevier Ltd. All rights reserved.

Cyanotoxin mixtures and taste-and-odor compounds in cyanobacterial blooms from the midwestern united states

Science.gov (United States)

Graham, J.L.; Loftin, K.A.; Meyer, M.T.; Ziegler, A.C.

2010-01-01

The mixtures of toxins and taste-and-odor compounds present during cyanobacterial blooms are not well characterized and of particular concern when evaluating potential human health risks. Cyanobacterial blooms were sampled in twenty-three Midwestern United States lakes and analyzed for community composition, thirteen cyanotoxins by liquid chromatography/mass spectrometry and immunoassay, and two taste-and-odor compounds by gas chromatography/mass spectrometry. Aphanizomenon, Cylindrospermopsis and/or Microcystis were dominant in most (96%) blooms, but community composition was not strongly correlated with toxin and taste-and-odor occurrence. Microcystins occurred in all blooms. Total microcystin concentrations measured by liquid chromatography/mass spectrometry and immunoassay were linearly related (rs = 0.76, p cyanotoxins occurred in 48% of blooms and 95% had multiple microcystin variants. Toxins and taste-and-odor compounds frequently co-occurred (91% of blooms), indicating odor may serve as a warning that cyanotoxins likely are present. However, toxins occurred more frequently than taste-and-odor compounds, so odor alone does not provide sufficient warning to ensure human-health protection. ?? This article not subject to U.S. Copyright. Published 2010 by the American Chemical Society.

Extensive Chaetoceros curvisetus bloom in relation to water quality in Port Blair Bay, Andaman Islands.

Science.gov (United States)

Begum, Mehmuna; Sahu, Biraja Kumar; Das, Apurba Kumar; Vinithkumar, Nambali Valsalan; Kirubagaran, Ramalingam

2015-05-01

Blooming of diatom species Chaetoceros curvisetus (Cleve, 1889) was observed in Junglighat Bay and Haddo Harbour of Port Blair Bay of Andaman and Nicobar Islands during June 2010. Physico-chemical parameters, nutrient concentrations and phytoplankton composition data collected from five stations during 2010 were classified as bloom area (BA) and non-bloom area (NBA) and compared. Elevated values of dissolved oxygen were recorded in the BA, and it significantly varied (p NBA. Among the nutrient parameters studied, nitrate concentration indicated significant variation in BA and NBA (p NBA, indicating its utilization. In Junglighat Bay, the C. curvisetus species constituted 93.4 and 69.2% composition of total phytoplankton population during day 1 and day 2, respectively. The bloom forming stations separated out from the non-bloom forming station in non-parametric multidimensional scaling (nMDS) ordinations; cluster analysis powered by SIMPROF test also grouped the stations as BA and NBA.

Monitoring of ocean surface algal blooms in coastal and oceanic waters around India.

Digital Repository Service at National Institute of Oceanography (India)

Tholkapiyan, M.; Shanmugam, P.; Suresh, T.

of the MODIS-Aqua-derived OSABI (ocean surface algal bloom index) and its seasonal composite images report new information and comprehensive pictures of these blooms and their evolution stages in a wide variety of events occurred at different times of the years...

Comparative Analysis of Flower Volatiles from Nine Citrus at Three Blooming Stages

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Muhammad Azam

2013-11-01

Full Text Available Volatiles from flowers at three blooming stages of nine citrus cultivars were analyzed by headspace-solid phase microextraction (HS-SPME-GC-MS. Up to 110 volatiles were detected, with 42 tentatively identified from citrus flowers for the first time. Highest amounts of volatiles were present in fully opened flowers of most citrus, except for pomelos. All cultivars were characterized by a high percentage of either oxygenated monoterpenes or monoterpene hydrocarbons, and the presence of a high percentage of nitrogen containing compounds was also observed. Flower volatiles varied qualitatively and quantitatively among citrus types during blooming. Limonene was the most abundant flower volatile only in citrons; α-citral and β-citral ranked 2nd and 3rd only for Bergamot, and unopened flowers of Ponkan had a higher amount of linalool and β-pinene while much lower amount of γ-terpinene and p-cymene than Satsuma. Taking the average of all cultivars, linalool and limonene were the top two volatiles for all blooming stages; β-pinene ranked 3rd in unopened flowers, while indole ranked 3rd for half opened and fully opened flower volatiles. As flowers bloomed, methyl anthranilate increased while 2-hexenal and p-cymene decreased. In some cases, a volatile could be high in both unopened and fully opened flowers but low in half opened ones. Through multivariate analysis, the nine citrus cultivars were clustered into three groups, consistent with the three true citrus types. Furthermore, an influence of blooming stages on clustering was observed, especially with hybrids Satsuma and Huyou. Altogether, it was suggested that flower volatiles can be suitable markers for revealing the genetic relationships between citrus cultivars but the same blooming stage needs to be strictly controlled.

The impact of habitat conditions on blooming of Helichrysum arenarium (L. Moench

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Anna K. Sawilska

2012-12-01

Full Text Available Helichrysum arenarium (L. Moench is a perennial belonging to the Asteraceae family. It is used as a herb material. The species is under partial protection. The aim of the study was to determine the influence of the community type and weather conditions on blooming of everlasting. Growth and development dynamics vs. habitat factors were analyzed in detail. The results of this study indicate that blooming process of everlasting populations remains under influence of habitat factors, which is evidenced by a decrease of potential fertility paralleled by an increase of number of taxa found in phytocoenosis. Blooming process is also modified by weather conditions: the potential fertility index is significantly correlated with precipitation.

Distribution of coccolithophores as a potential proxy in paleoceanography: The case of the Oman Sea monsoonal pattern

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Mojtahedin Elham

2015-02-01

Full Text Available High abundances of coccoliths have been observed in surface sediment samples from near the coasts of the Oman Sea in February 2011. At the end of the NE monsoon, the locally observed high Gephyrocapsa oceanica production is hypothesized to respond to local injections of nutrient-rich deep water into the surface water due to sea-surface cooling leading to convection. The most abundant coccolithophore species are G. oceanica followed by Emiliania huxleyi, Helicosphaera carteri, Calcidiscus leptoporus. Some species, such as Gephyrocapsa muellerae, Gephyrocapsa ericsonii, Umbilicosphaera sibogae, Umbellosphaera tenuis and Florisphaera profunda, are rare. The G. oceanica suggested a prevalence of upwelling conditions or high supply of nutrients in the Oman Sea (especially West Jask at the end of the NE monsoon. E. huxleyi showed low relative abundances at the end of the NE monsoon. Due to the location of the Oman Sea in low latitudes with high temperatures, we have observed low abundances of G. muellerae in the study area. Additionally, we have identified low abundances of G. ericsonii at the end of the NE monsoon. Helicosphaera carteri showed a clear negative response with decreasing amounts (relative abundances at the end of the NE monsoon. C. leptoporus, U. sibogae and U. tenuis have very low relative abundances in the NE monsoon and declined extremely at the end of the NE monsoon. F. profunda, which is known to inhabit the lower photic zone (<100 m depht was rarely observed in the samples.

Distribution of coccolithophores as a potential proxy in paleoceanography: The case of the Oman Sea monsoonal pattern

Science.gov (United States)

Mojtahedin, Elham; Hadavi, Fatemeh; Lak, Razyeh

2015-02-01

High abundances of coccoliths have been observed in surface sediment samples from near the coasts of the Oman Sea in February 2011. At the end of the NE monsoon, the locally observed high Gephyrocapsa oceanica production is hypothesized to respond to local injections of nutrient-rich deep water into the surface water due to sea-surface cooling leading to convection. The most abundant coccolithophore species are G. oceanica followed by Emiliania huxleyi, Helicosphaera carteri, Calcidiscus leptoporus. Some species, such as Gephyrocapsa muellerae, Gephyrocapsa ericsonii, Umbilicosphaera sibogae, Umbellosphaera tenuis and Florisphaera profunda, are rare. The G. oceanica suggested a prevalence of upwelling conditions or high supply of nutrients in the Oman Sea (especially West Jask) at the end of the NE monsoon. E. huxleyi showed low relative abundances at the end of the NE monsoon. Due to the location of the Oman Sea in low latitudes with high temperatures, we have observed low abundances of G. muellerae in the study area. Additionally, we have identified low abundances of G. ericsonii at the end of the NE monsoon. Helicosphaera carteri showed a clear negative response with decreasing amounts (relative abundances) at the end of the NE monsoon. C. leptoporus, U. sibogae and U. tenuis have very low relative abundances in the NE monsoon and declined extremely at the end of the NE monsoon. F. profunda, which is known to inhabit the lower photic zone (<100 m depht) was rarely observed in the samples.

The sedimentary record of dinoflagellate cysts: looking back into the future of phytoplankton blooms

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Barrie Dale

2001-12-01

Full Text Available Marine systems are not as well understood as terrestrial systems, and there is still a great need for more primary observations, in the tradition of the old-time naturalists, before newer methods such as molecular genetics and modeling can be fully utilized. The scientific process whereby the smaller, detailed building blocks of observation are ultimately linked towards better understanding natural systems is illustrated from my own career experience, especially with regard to the dinoflagellates and plankton blooms. Some dinoflagellates produce a fossilizable resting stage (cyst in their life cycle, and dinoflagellate cysts have become one of the most important groups of microfossils used in geological exploration (e.g. oil and gas. This has stimulated both paleontological and biological research producing detailed building blocks of information, currently scattered throughout the respective literature. Here, I attempt to bring together the present day perspective, from biology, with the past, from paleontology, as the most comprehensive basis for future work on the group. This shows the cysts to be the critical link needed for focusing future molecular genetics studies towards a more verifiable view of evolutionary pathways, and it also suggests new integrated methods for studying past, present, and future blooms. The large, rapidly growing field of harmful algal bloom studies is producing many different building blocks, but plankton blooms as episodic phenomena are still poorly understood. This is largely due to the general lack of long-term datasets allowing identification of the changing environmental factors that permit certain species to bloom at unpredictable intervals of time. Cysts in sediments are useful environmental indicators today, e.g. reflecting aspects of climate and pollution, and provide information directly relevant to some dinoflagellate blooms. They therefore may be used for obtaining retrospective information from the

An Improved Thermal Blooming Model for the Laser Performance Code Anchor

Science.gov (United States)

2016-06-01

over which a laser beam can maintain transverse coherence throughout its propagation distance. Typical values of ro are on the order of a few...G. Gebhardt, “Twenty-five years of thermal blooming: An overview,” in Proceedings of SPIE 1221 Propagation of High-Energy Laser Beams Through the...TERMS thermal blooming, atmospheric propagation , laser , scaling code, Strehl ratio, ANCHOR, COAMPS, NAVSLaM, LEEDR 15. NUMBER OF PAGES 77 16

Detection of surface algal blooms using the newly developed algorithm surface algal bloom index (SABI)

Science.gov (United States)

Alawadi, Fahad

2010-10-01

Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HABs involved and the environmental conditions, if their concentration rises above a critical threshold, it can impact the flora and fauna of the aquatic habitat through the introduction of the so called "red tide" phenomenon. The estimation of chlorophyll concentration is derived from quantifying the spectral relationship between the blue and the green bands reflected from the water column. This spectral relationship is employed in the standard ocean colour chlorophyll-a (Chlor-a) product, but is incapable of detecting certain macro-algal species that float near to or at the water surface in the form of dense filaments or mats. The ability to accurately identify algal formations that sometimes appear as oil spill look-alikes in satellite imagery, contributes towards the reduction of false-positive incidents arising from oil spill monitoring operations. Such algal formations that occur in relatively high concentrations may experience, as in land vegetation, what is known as the "red-edge" effect. This phenomena occurs at the highest reflectance slope between the maximum absorption in the red due to the surrounding ocean water and the maximum reflectance in the infra-red due to the photosynthetic pigments present in the surface algae. A new algorithm termed the surface algal bloom index (SABI), has been proposed to delineate the spatial distributions of floating micro-algal species like for example cyanobacteria or exposed inter-tidal vegetation like seagrass. This algorithm was

A new insight into black blooms: Synergies between optical and chemical factors

Science.gov (United States)

Duan, Hongtao; Loiselle, Steven Arthur; Li, Zuochen; Shen, Qiushi; Du, Yingxun; Ma, Ronghua

2016-06-01

Black blooms have been associated with fish-kills and the loss of benthic fauna as well as closure of potable water supplies. Their frequency and duration has increased in recent decades in rivers, inland lakes and reservoirs, and has often been associated with the decay and release of organic matter (planktonic algae, aquatic macrophytes, sediment release, etc.). However, the interactions between microbial, chemical, hydrodynamic and optical conditions necessary for black blooms are poorly understood. The present study combines field investigations and laboratory mesocosm studies to show that black blooms are caused by a combination of high CDOM (chromophoric dissolved organic matter) absorption, the formation of CDOM-Fe complexes and low backscattering. Mesocosm experiments showed that black bloom conditions occur after 4 days, with a significant increase in the concentrations of Fe2+ and ∑S2-. Total absorption (excluding absorption due to water) at 440 nm increased by 30% over this time to 7.3 m-1. In addition, the relative contribution of CDOM absorption to the non-water total absorption increased from 18% to 50%. Regression analyses between chemical and bio-optical data in both field and mesocosm experiments indicated that the concentrations of Fe2+ co-varied positively with CDOM absorption ag(440) (R2 > 0.70), and the specific CDOM absorption (ag(440)/DOC). Conditions that favored the development of black blooms were elevated algal or macrophyte biomass and limited water column mixing.

Factors controlling the development of phytoplankton blooms in the Antarctic Ocean

International Nuclear Information System (INIS)

Sakshaug, Egil; Holm-Hansen, Osmund

1991-01-01

A mathematical model describing the development of phytoplankton blooms as a function of the depth of the wind-mixed layer, spectral distribution of light, passage of atmospheric low-pressure systems, size of the initial phytoplankton stock and loss rates is presented. Model runs represent shade-adapted, large-celled, bloom-forming diatoms Periodic deep mixing caused by strong winds may severely retard the development of blooms and frequently abort them before macronutrients are completely exhausted. Moderate depths of mixing (40-50 m) in combination with a moderately large total loss rate (about 0.013h -1 ) can prevent blooms from developing during the brightest time of the year. Complete exhaustion of macronutrients in the upper waters is likely only if the wind-mixed layer is less than 10 m deep, i.e. in very sheltered waters, and also in the marginal ice zone when ice is melting. The authors do not exclude the possibility of control of phytoplankton biomass by iron in ice-free, deep-sea parts of the Antarctic Ocean, but the implied enhancement of export production through addition of iron might be restricted because of limitation by light, i.e. vertical mixing. (author). 32 ref.; 5 figs.; 2 tabs

Bloom Dynamics of Cyanobacteria and Their Toxins: Environmental Health Impacts and Mitigation Strategies

Science.gov (United States)

Rastogi, Rajesh P.; Madamwar, Datta; Incharoensakdi, Aran

2015-01-01

Cyanobacteria are ecologically one of the most prolific groups of phototrophic prokaryotes in both marine and freshwater habitats. Both the beneficial and detrimental aspects of cyanobacteria are of considerable significance. They are important primary producers as well as an immense source of several secondary products, including an array of toxic compounds known as cyanotoxins. Abundant growth of cyanobacteria in freshwater, estuarine, and coastal ecosystems due to increased anthropogenic eutrophication and global climate change has created serious concern toward harmful bloom formation and surface water contamination all over the world. Cyanobacterial blooms and the accumulation of several cyanotoxins in water bodies pose severe ecological consequences with high risk to aquatic organisms and global public health. The proper management for mitigating the worldwide incidence of toxic cyanobacterial blooms is crucial for maintenance and sustainable development of functional ecosystems. Here, we emphasize the emerging information on the cyanobacterial bloom dynamics, toxicology of major groups of cyanotoxins, as well as a perspective and integrative approach to their management. PMID:26635737

Toxin composition of the 2016 Microcystis aeruginosa bloom in the St. Lucie Estuary, Florida.

Science.gov (United States)

Oehrle, Stuart; Rodriguez-Matos, Marliette; Cartamil, Michael; Zavala, Cristian; Rein, Kathleen S

2017-11-01

A bloom of the cyanobacteria, Microcystis aeruginosa occurred in the St. Lucie Estuary during the summer of 2016, stimulated by the release of waters from Lake Okeechobee. This cyanobacterium produces the microcystins, a suite of heptapeptide hepatotoxins. The toxin composition of the bloom was analyzed and was compared to an archived bloom sample from 2005. Microcystin-LR was the most abundant toxin with lesser amounts of microcystin variants. Nodularin, cylindrospermopsin and anatoxin-a were not detected. Copyright © 2017 Elsevier Ltd. All rights reserved.

The bloom of the dinoflagellate (Noctiluca miliaris) in the North Eastern Arabian Sea: Ship and Satellite study

Digital Repository Service at National Institute of Oceanography (India)

Matondkar, S.G.P.; Basu, S.; Parab, S.G.; Pednekar, S.; Dwivedi, R.M.; Raman, M.; Goes, J.I.; Gomes, H.

The bloom of Noctiluca miliaris (a dinoflagellate) which appears in the form of a green tide was studied from 2003-2011. This bloom covered a large area of the Arabian Sea from the west coast of India to the coast of Oman. The bloom was easily...

Selective grazing of Temora longicornis in different stages of a Phaeocystis globosa bloom - a mesocosm study

DEFF Research Database (Denmark)

Koski, Marja; Dutz, Jörg; Breteler, W.C.M.K.

2005-01-01

changes during the initiation, maintenance, collapse and decay of a P. globosa bloom and (3) if P. globosa dominated food assemblage provides a good diet for copepod egg production. Our results show low but constant feeding on small colonies of P. globosa, irrespective of the type or concentration...... of alternative food sources. In contrast, feeding on single cells was never significant, and the total contribution of P globosa to carbon ingestion of T longicornis was minor. T longicornis fed most actively on the decaying colonies, whereas during the peak of the bloom copepods selected against P globosa....... Mostly, T longicornis fed unselectively on different food particles: before the bloom, the major part of the diet consisted of diatoms, whereas during and after the bloom copepod diet was dominated by dinoflagellates and ciliates. Egg production was highest during the decay of the bloom, coinciding...

The history of cyanobacterial blooms in the Baltic Sea.

Science.gov (United States)

Finni, T; Kononen, K; Olsonen, R; Wallström, K

2001-08-01

Long-term information on possible changes in cyanobacterial blooms in the Baltic Sea, formed mainly by Nodularia spumigena and Aphanizomenon sp., was sought in published records in historical (years 1887-1938) and modern (years 1974-1998) phytoplankton data sets. Old and new sampling methods and fixatives were tested to improve the comparison of data that had been collected and analyzed in different ways. A hundred years ago, plankton was mainly of interest as a source of fish food; eutrophication problems were only locally reported from the coast, mainly in southern haffs and the receiving waters of larger cities. There were few recordings of open-sea blooms before World War II. Abundances of Nodularia spumigena and Aphanizomenon sp. were low in the old material, and 137 summer samples from 1887-1938 showed no peak abundance. High abundances are common in the new material, and the range of the numbers of both taxa has increased markedly relative to the old material. Since the 1960s, cyanobacterial blooms have been common in the open sea in both the Baltic proper and the Gulf of Finland, indicating high availability of nutrients.

Cyanobacterial bloom in the world largest freshwater lake Baikal

Science.gov (United States)

Namsaraev, Zorigto; Melnikova, Anna; Ivanov, Vasiliy; Komova, Anastasia; Teslyuk, Anton

2018-02-01

Lake Baikal is a UNESCO World Heritage Site and holds 20% of the world’s freshwater reserves. On July 26, 2016, a cyanobacterial bloom of a green colour a few kilometers in size with a bad odor was discovered by local people in the Barguzinsky Bay on the eastern shore of Lake Baikal. Our study showed very high concentration of chlorophyll a (41.7 g/m3) in the sample of bloom. We found that the bloom was dominated by a nitrogen-fixing heterocystous cyanobacteria of the genus Dolichospermum. The mass accumulation of cyanobacteria in the lake water with an extremely high chlorophyll a concentration can be explained by a combination of several factors: the discharge of biologicaly-available nutrients, including phosphorus, into the water of Lake Baikal; low wind speed and weak water mixing; buoyant cyanobacterial cells on the lake surface, which drifted towards the eastern coast, where the maximum concentration of chlorophyll a was recorded. In the center of the Barguzinsky Bay and in the open part of Lake Baikal, according to satellite data, the chlorophyll a concentration is several orders of magnitude lower than at the shoreline.

Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics

Directory of Open Access Journals (Sweden)

Carlo Berg

2018-02-01

Full Text Available Marine and brackish surface waters are highly dynamic habitats that undergo repeated seasonal variations in microbial community composition and function throughout time. While succession of the various microbial groups has been well investigated, little is known about the underlying gene-expression of the microbial community. We investigated microbial interactions via metatranscriptomics over a spring to fall seasonal cycle in the brackish Baltic Sea surface waters, a temperate brackish water ecosystem periodically promoting massive cyanobacterial blooms, which have implications for primary production, nutrient cycling, and expansion of hypoxic zones. Network analysis of the gene expression of all microbes from 0.22 to 200 μm in size and of the major taxonomic groups dissected the seasonal cycle into four components that comprised genes peaking during different periods of the bloom. Photoautotrophic nitrogen-fixing Cyanobacteria displayed the highest connectivity among the microbes, in contrast to chemoautotrophic ammonia-oxidizing Thaumarchaeota, while heterotrophs dominated connectivity among pre- and post-bloom peaking genes. The network was also composed of distinct functional connectivities, with an early season balance between carbon metabolism and ATP synthesis shifting to a dominance of ATP synthesis during the bloom, while carbon degradation, specifically through the glyoxylate shunt, characterized the post-bloom period, driven by Alphaproteobacteria as well as by Gammaproteobacteria of the SAR86 and SAR92 clusters. Our study stresses the exceptionally strong biotic driving force executed by cyanobacterial blooms on associated microbial communities in the Baltic Sea and highlights the impact cyanobacterial blooms have on functional microbial community composition.

Uma visão interdisciplinar integrada da Taxonomia de Bloom

OpenAIRE

Trindade, José Pedro; Bahia, Sara; Mucharreira, Pedro Ribeiro

2015-01-01

Objetivos: Exemplificar uma aplicação da Taxonomia de Bloom numa atividade interdisciplinar numa escola do ensino privado em Lisboa e avaliar a sua eficácia. Fundamentação: A taxonomia revista de Bloom (Krathwohl, 2002) refere-se a conhecimentos de factos, conceitos, procedimentos e metacognitivos e desenvolve-se a partir da memorização, compreensão e aplicação, até à análise, avaliação e criação. No presente estudo, esta taxonomia procura consubstanciar uma linguagem comum par...

Benjamin Bloom: His Research and Influence on Education.

Science.gov (United States)

Anderson, Lorin W.

1988-01-01

A student of the University of Chicago's Measurement, Evaluation, and Statistical Analysis Program reflects upon Benjamin S. Bloom's professional and personal educational contributions, including mastery learning, educational equity, and educational excellence. (CB)

Blooming reduces the antioxidant capacity of dark chocolate in rats without lowering its capacity to improve lipid profiles.

Science.gov (United States)

Shadwell, Naomi; Villalobos, Fatima; Kern, Mark; Hong, Mee Young

2013-05-01

Dark chocolate contains high levels of antioxidants which are linked to a reduced risk of cardiovascular disease. Chocolate blooming occurs after exposure to high temperatures. Although bloomed chocolate is safe for human consumption, it is not known whether or not the biological function of bloomed chocolate is affected. We hypothesized that bloomed chocolate would reduce the antioxidant potential and lipid-lowering properties of chocolate through altered expression of related genes. Thirty Sprague-Dawley rats were divided into 3 groups and fed either the control (CON), regular dark chocolate (RDC), or bloomed dark chocolate (BDC) diet. After 3 weeks, serum lipid levels and antioxidant capacity were measured. Hepatic expression of key genes was determined by real time polymerase chain reaction (PCR). Sensory characteristics of bloomed versus regular chocolate were assessed in 28 semi-trained panelists. Rats fed RDC exhibited greater serum antioxidant capacities compared to the CON (P chocolate compared to bloomed chocolate (P chocolate, these results suggest that bloomed dark chocolate yields similarly beneficial effects on most blood lipid parameters or biomarkers. However, regular dark chocolate may be more beneficial for the improvement of antioxidant status and modulation of gene expression involved in lipid metabolism and promoted greater sensory ratings. Copyright © 2013 Elsevier Inc. All rights reserved.

Detection of Coccolithophore Blooms in Ocean Color Satellite Imagery: a Generalized Approach for Use with Multiple Sensors

Science.gov (United States)

Moore, Timothy; Dowell, Mark; Franz, Bryan A.

2012-01-01

A generalized coccolithophore bloom classifier has been developed for use with ocean color imagery. The bloom classifier was developed using extracted satellite reflectance data from SeaWiFS images screened by the default bloom detection mask. In the current application, we extend the optical water type (OWT) classification scheme by adding a new coccolithophore bloom class formed from these extracted reflectances. Based on an in situ coccolithophore data set from the North Atlantic, the detection levels with the new scheme were between 1,500 and 1,800 coccolithophore cellsmL and 43,000 and 78,000 lithsmL. The detected bloom area using the OWT method was an average of 1.75 times greater than the default bloom detector based on a collection of SeaWiFS 1 km imagery. The versatility of the scheme is shown with SeaWiFS, MODIS Aqua, CZCS and MERIS imagery at the 1 km scale. The OWT scheme was applied to the daily global SeaWiFS imagery mission data set (years 19972010). Based on our results, average annual coccolithophore bloom area was more than two times greater in the southern hemisphere compared to the northern hemi- sphere with values of 2.00 106 km2 and 0.75 106 km2, respectively. The new algorithm detects larger bloom areas in the Southern Ocean compared to the default algorithm, and our revised global annual average of 2.75106 km2 is dominated by contributions from the Southern Ocean.

Harmful algal bloom smart device application: using image analysis and machine learning techniques for classification of harmful algal blooms

Science.gov (United States)

Northern Kentucky University and the U.S. EPA Office of Research Development in Cincinnati Agency are collaborating to develop a harmful algal bloom detection algorithm that estimates the presence of cyanobacteria in freshwater systems by image analysis. Green and blue-green alg...

Nitrogen and phosphorus requirements of an Alexandrium minutum bloom in the Penze' Estuary, France

Digital Repository Service at National Institute of Oceanography (India)

Maguer, J.-F.; Wafar, M.V.M.; Madec, C.; Morin, P.; Denn, E.E.

. The role of NO3 was restricted to sustenance of the bloom, whereas warm conditions resulting in a water column stability seem to have triggered the bloom, and a self-shading, probably coupled with a phosphorus limitation, caused its decline...

HIGH BREVETOXIN CONCENTRATIONS IN GYMNODINIUM BREVE BLOOMS ALONG THE NORTHWEST FLORIDA COAST DURING 1999.

Science.gov (United States)

Blooms of the dinoflagellate Gymnodinium breve (i.e. red tides) produce brevetoxins (PbTx) that negatively impact the Gulf of Mexico ecosystem, human health, and local economics. Characterizing and predicting bloom events and their impacts requires knowledge of G. breve abundance...

Oceanic and atmospheric influences on the variability of phytoplankton bloom in the southwestern Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Raj, R.P.; Peter, B.N.; Pushpadas, D.

in the Mozambique Basin and inside the Mozambique Channel (MC). For a detailed inspection, we characterized the entire process of the development of this large dendritic bloom into two stages, early stage... period was in March. During 2001 and 2003, traces of the bloom (low concentration of chl-a) are observed in the MC and Mozambique Basin but not in the Madagascar basin. A weak bloom developed in the Madagascar Basin, Mozambique Basin and inside the MC...

Development of Phaeocystis globosa blooms in the upwelling waters of the South Central coast of Viet Nam

Science.gov (United States)

Hai, Doan-Nhu; Lam, Nguyen-Ngoc; Dippner, Joachim W.

2010-11-01

Blooms of haptophyte algae in the south central coastal waters of Viet Nam often occur in association with upwelling phenomenon during the southwest (SW) monsoon. Depending on the magnitude of the blooms, damage to aquaculture farms may occur. Based on two years of data on biology, oceanography, and marine chemistry, the present study suggests a conceptual model of the growth of the haptophyte Phaeocystis globosa. At the beginning of the bloom, low temperature and abundant nutrient supply, especially nitrate from rain and upwelling, favour bloom development. Diatoms utilize available nitrate and phosphate; subsequently, higher ammonium concentration allows P. globosa to grow faster than the diatoms. At the end of the Phaeocystis bloom, free cells may become available as food for a heterotrophic dinoflagellate species, Noctiluca scintillans. During and after the phytoplankton bloom, remineralization by bacteria reduces dissolved oxygen to a very low concentration at depth, and favors growth of nitrate-reducing bacteria.A Lagrangian Harmful Algal Bloom (HAB) model, driven by a circulation model of the area, realistically simulates the transport of microalgae in surface waters during strong and weak SW monsoon periods, suggesting that it may be a good tool for early warning of HABs in Vietnamese coastal waters.

The Internationalization of Bloom's Learning for Mastery: A 25-Year Retrospective-Prospective View.

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Hymel, Glenn M.; Dyck, Walter E.

Twenty-five years have elapsed since the publication of Benjamin S. Bloom's article titled "Learning for Mastery." With approximately 2,000 master learning/testing citations in the ERIC data base alone, Bloom's 1968 piece is indeed one of the most generative works to appear in the educational psychology literature in decades. At this…

Making Culture Bloom

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Iain McCalman

2013-08-01

Full Text Available On 16 June 1904, exactly one hundred years before the establishment of CHASS, an Irish Jew of Hungarian extraction called Leopold Bloom set off on a twenty-four hour perambulation around the streets and bars of Dublin. This fictional incident is the basis of James Joyce’s Ulysses, the greatest novel of modern times. It has also given rise to Bloomsday, a kind of Irish literary holy day celebrated in cities all around the world. It was a specially appropriate moment for us to celebrate the birth of our new peak body, because Bloomsday provides a perfect parable for why the Australian public and government should cherish our sector.

The Role of Bloom Index of Gelatin on the Interaction with Retinal Pigment Epithelial Cells

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Jui Yang Lai

2009-08-01

Full Text Available Biocompatible materials are of considerable interest in the development of cell/drug delivery carriers for therapeutic applications. This paper investigates the effects of the Bloom index of gelatin on its interaction with retinal pigment epithelial (RPE cells. Following two days of culture of ARPE-19 cells with gelatin samples G75-100, G175, and G300, the in vitro biocompatibility was determined by cell proliferation and viability assays, and glutamate uptake measurements, as well as cytokine expression analyses. The mitochondrial dehydrogenase activity in the G300 groups was significantly lower than that of G75-100 and G175 groups. The Live/Dead assays also showed that the gelatin samples G300 induced mild cytotoxicity. In comparison with the treatment of gelatins with low Bloom index, the exposure to high Bloom strength gelatins markedly reduced the glutamate uptake capacity of ARPE-19 cells. One possible explanation for these observations is that the presence of gelatin samples G300 with high viscosity in the medium may affect the nutrient availability to cultured cells. The analyses of pro-inflammatory cytokine IL-6 expression at both mRNA and protein levels showed that the gelatins with low Bloom index caused less cellular inflammatory reaction and had more acceptable biocompatibility than their high Bloom strength counterparts. These findings suggest that the Bloom index gives influence on cellular responses to gelatin materials.

A winter dinoflagellate bloom drives high rates of primary production in a Patagonian fjord ecosystem

Science.gov (United States)

Montero, P.; Pérez-Santos, I.; Daneri, G.; Gutiérrez, M. H.; Igor, G.; Seguel, R.; Purdie, D.; Crawford, D. W.

2017-12-01

A dense winter bloom of the dinoflagellate Heterocapsa triquetra was observed at a fixed station (44°35.3‧S; 72°43.6‧W) in the Puyuhuapi Fjord in Chilean Patagonia during July 2015. H. triquetra dominated the phytoplankton community in the surface waters between 2 and 15 m (13-58 × 109 cell m-2), with abundances some 3 to 15 times higher than the total abundance of the diatom assemblage, which was dominated by Skeletonema spp. The high abundance of dinoflagellates was reflected in high rates of gross primary production (GPP; 0.6-1.6 g C m-2 d-1) and chlorophyll-a concentration (Chl-a; 70-199.2 mg m-2) that are comparable to levels reported in spring diatom blooms in similar Patagonian fjords. We identify the main forcing factors behind a pulse of organic matter production during the non-productive winter season, and test the hypothesis that low irradiance levels are a key factor limiting phytoplankton blooms and subsequent productivity during winter. Principal Component Analysis (PCA) indicated that GPP rates were significantly correlated (r = -0.8, p bloom. The bloom occurred under low surface irradiance levels characteristic of austral winter and was accompanied by strong northern winds, associated with the passage of a low-pressure system, and a water column dominated by double diffusive layering. To our knowledge, this is the first report of a dense dinoflagellate bloom during deep austral winter in a Patagonian fjord, and our data challenge the paradigm of light limitation as a factor controlling phytoplankton blooms in this region in winter.

Modelling the production of dimethylsulfide during a phytoplankton bloom

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Gabric, Albert; Murray, Nicholas; Stone, Lewi; Kohl, Manfred

1993-12-01

Dimethylsulfide (DMS) is an important sulfur-containing atmospheric trace gas of marine biogenic origin. DMS emitted from the oceans may be a precursor of tropospheric aerosols and cloud condensation nuclei (CCN), thereby affecting the Earth's radiative balance and possibly constituting a negative feedback to global warming, although this hypothesis is still somewhat controversial. The revised conceptual model of the marine pelagic food web gives a central role to planktonic bacteria. Recent experiments have shown that consumption of dissolved DMS by microbial metabolism may be more important than atmospheric exchange in controlling its concentration in surface waters and hence its ventilation to the atmosphere. In this paper we investigate the effect of the marine food web on cycling of dissolved DMS in surface waters during a phytoplankton bloom episode. A nitrogen-based flow network simulation model has been used to analyze the relative importance of the various biological and chemical processes involved. The model predictions suggest that the concentration of DMS in marine surface waters is indeed governed by bacterial metabolism. Environmental factors that affect the bacterial compartment are thus likely to have a relatively large influence on dissolved DMS concentrations. The ecological succession is particularly sensitive to the ratio of phytoplankton to bacterial nutrient uptake rates as well the interaction between herbivore food chain and the microbial loop. Importantly for the design of field studies, the model predicts that peak DMS concentrations are achieved during the decline of the phytoplankton bloom with a typical time lag between peak DMS and peak phytoplankton biomass of 1 to 2 days. Significantly, the model predicts a relatively high DMS concentration persisting after the phytoplankton bloom due to excretion from large protozoa and zooplankton, which may be an additional explanation for the lack of correlation between DMS and chlorophyll a

Calibrating the Difficulty of an Assessment Tool: The Blooming of a Statistics Examination

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Dunham, Bruce; Yapa, Gaitri; Yu, Eugenia

2015-01-01

Bloom's taxonomy is proposed as a tool by which to assess the level of complexity of assessment tasks in statistics. Guidelines are provided for how to locate tasks at each level of the taxonomy, along with descriptions and examples of suggested test questions. Through the "Blooming" of an examination--that is, locating its constituent…

Spring Blooms Observed with Biochemical Profiling Floats from a Chemical and Biological Perspective

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Plant, J. N.; Johnson, K. S.; Sakamoto, C.; Jannasch, H. W.; Coletti, L. J.; Elrod, V.

2015-12-01

Recently there has been renewed interest in the mechanisms which control the seasonal increases in plankton biomass (spring blooms). Changes in physical and chemical forcing (light, wind, heat and nutrients) may increase the specific growth rate of phytoplankton. These changes may also shift the predator - prey relationships within the food web structure, which can alter the balance between plankton growth and loss rates. Biogeochemical profiling floats provide a means to observe the seasonal evolution of spring blooms from a physical, chemical and biological perspective in near real time. Floats equipped with optical sensors to measure nitrate, oxygen, chlorophyll fluorescence, and optical backscatter now have a presence in many ocean regions including the North Pacific, Subarctic Pacific, North Atlantic, South Atlantic and the Southern Ocean. Data from these regions are used to compare and contrast the evolution of spring blooms. The evolution of the bloom is examined using both chemical (oxygen, nitrate) and biooptical (phytoplankton from chlorophyll fluorescence and particulate organic carbon from optical backscatter) sensors under vastly different environmental conditions.

Critical review of actually available chemical compounds for prevention and management of cyanobacterial blooms

Czech Academy of Sciences Publication Activity Database

Jančula, Daniel; Maršálek, Blahoslav

2011-01-01

Roč. 85, č. 9 (2011), s. 1415-1422 ISSN 0045-6535 R&D Projects: GA MŠk 1M0571 Institutional research plan: CEZ:AV0Z60050516 Keywords : algicide * bloom management * cyanobacterial blooms Subject RIV: EF - Botanics Impact factor: 3.206, year: 2011

Temporal influences on satellite retrieval of cyanobacteria bloom: an examination in Lake Taihu, China

Science.gov (United States)

Zhang, Yue; Liu, Yuanbo; Ruan, Renzong; Zhao, Dongbo

2009-10-01

Satellite imagery provides a cost-effective way to retrieve the cyanbacteria bloom dynamics, which is useful to early warning of the blooms. However, temporal variations in sun-target-satellite geometry and atmosphere may generate inconsistencies in multi-temporal images. To explore to what extent temporal influences could affect the retrieved results, we applied the single band and the band ratio approaches to retrieve cyanobacteria bloom in Lake Taihu of China. We used the Moderate Resolution Imaging Spectroradiometer (MODIS) products in the cases with and without correction for sun-target-satellite geometry and atmospheric effects for the whole year 2006. In addition, we made use of MODIS data including aerosol optical thickness (AOT), solar zenith angle and sensor zenith angle, all of which are indicators of the temporal influences. We then analyzed the relationships of retrieval differences with the three indicators to evaluate the temporal influences quantitatively. Our results showed that both AOT and solar zenith angle had a positive correlation with the retrieval of cyanobacteria bloom. Although it is yet under investigation if this relationship could hold on for other cases, here we emphasized that for reliable monitoring the dynamics of bloom, it should be careful to apply the approaches using satellite data without radiometric correction.

Assessing the potential long-term increase of oceanic fossil fuel CO2 uptake due to CO2-calcification feedback

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T. M. Lenton

2007-07-01

Full Text Available Plankton manipulation experiments exhibit a wide range of sensitivities of biogenic calcification to simulated anthropogenic acidification of the ocean, with the "lab rat" of planktic calcifiers, Emiliania huxleyi apparently not representative of calcification generally. We assess the implications of this observational uncertainty by creating an ensemble of realizations of an Earth system model that encapsulates a comparable range of uncertainty in calcification response to ocean acidification. We predict that a substantial reduction in marine carbonate production is possible in the future, with enhanced ocean CO2 sequestration across the model ensemble driving a 4–13% reduction in the year 3000 atmospheric fossil fuel CO2 burden. Concurrent changes in ocean circulation and surface temperatures in the model contribute about one third to the increase in CO2 uptake. We find that uncertainty in the predicted strength of CO2-calcification feedback seems to be dominated by the assumption as to which species of calcifier contribute most to carbonate production in the open ocean.

Coccolithophore calcification response to past ocean acidification and climate change.

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O'Dea, Sarah A; Gibbs, Samantha J; Bown, Paul R; Young, Jeremy R; Poulton, Alex J; Newsam, Cherry; Wilson, Paul A

2014-11-17

Anthropogenic carbon dioxide emissions are forcing rapid ocean chemistry changes and causing ocean acidification (OA), which is of particular significance for calcifying organisms, including planktonic coccolithophores. Detailed analysis of coccolithophore skeletons enables comparison of calcite production in modern and fossil cells in order to investigate biomineralization response of ancient coccolithophores to climate change. Here we show that the two dominant coccolithophore taxa across the Paleocene-Eocene Thermal Maximum (PETM) OA global warming event (~56 million years ago) exhibited morphological response to environmental change and both showed reduced calcification rates. However, only Coccolithus pelagicus exhibits a transient thinning of coccoliths, immediately before the PETM, that may have been OA-induced. Changing coccolith thickness may affect calcite production more significantly in the dominant modern species Emiliania huxleyi, but, overall, these PETM records indicate that the environmental factors that govern taxonomic composition and growth rate will most strongly influence coccolithophore calcification response to anthropogenic change.

Parameter constraints of grazing response functions. Implications for phytoplankton bloom initiation

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Jordi Solé

2016-09-01

Full Text Available Phytoplankton blooms are events of production and accumulation of phytoplankton biomass that influence ecosystem dynamics and may also have effects on socio-economic activities. Among the biological factors that affect bloom dynamics, prey selection by zooplankton may play an important role. Here we consider the initial state of development of an algal bloom and analyse how a reduced grazing pressure can allow an algal species with a lower intrinsic growth rate than a competitor to become dominant. We use a simple model with two microalgal species and one zooplankton grazer to derive general relationships between phytoplankton growth and zooplankton grazing. These relationships are applied to two common grazing response functions in order to deduce the mathematical constraints that the parameters of these functions must obey to allow the dominance of the lower growth rate competitor. To assess the usefulness of the deduced relationships in a more general framework, the results are applied in the context of a multispecies ecosystem model (ERSEM.

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom.

Science.gov (United States)

Needham, David M; Fuhrman, Jed A

2016-02-29

Marine phytoplankton perform approximately half of global carbon fixation, with their blooms contributing disproportionately to carbon sequestration(1), and most phytoplankton production is ultimately consumed by heterotrophic prokaryotes(2). Therefore, phytoplankton and heterotrophic community dynamics are important in modelling carbon cycling and the impacts of global change(3). In a typical bloom, diatoms dominate initially, transitioning over several weeks to smaller and motile phytoplankton(4). Here, we show unexpected, rapid community variation from daily rRNA analysis of phytoplankton and prokaryotic community members following a bloom off southern California. Analysis of phytoplankton chloroplast 16S rRNA demonstrated ten different dominant phytoplankton over 18 days alone, including four taxa with animal toxin-producing strains. The dominant diatoms, flagellates and picophytoplankton varied dramatically in carbon export potential. Dominant prokaryotes also varied rapidly. Euryarchaea briefly became the most abundant organism, peaking over a few days to account for about 40% of prokaryotes. Phytoplankton and prokaryotic communities correlated better with each other than with environmental parameters. Extending beyond the traditional view of blooms being controlled primarily by physics and inorganic nutrients, these dynamics imply highly heterogeneous, continually changing conditions over time and/or space and suggest that interactions among microorganisms are critical in controlling plankton diversity, dynamics and fates.

Cyanobacteria and Algae Blooms: Review of Health and Environmental Data from the Harmful Algal Bloom-Related Illness Surveillance System (HABISS) 2007–2011

Science.gov (United States)

Backer, Lorraine C.; Manassaram-Baptiste, Deana; LePrell, Rebecca; Bolton, Birgit

2015-01-01

Algae and cyanobacteria are present in all aquatic environments. We do not have a good sense of the extent of human and animal exposures to cyanobacteria or their toxins, nor do we understand the public health impacts from acute exposures associated with recreational activities or chronic exposures associated with drinking water. We describe the Harmful Algal Bloom-related Illness Surveillance System (HABISS) and summarize the collected reports describing bloom events and associated adverse human and animal health events. For the period of 2007–2011, Departments of Health and/or Environment from 11 states funded by the National Center for Environmental Health (NCEH), Centers for Disease Control and Prevention contributed reports for 4534 events. For 2007, states contributed 173 reports from historical data. The states participating in the HABISS program built response capacity through targeted public outreach and prevention activities, including supporting routine cyanobacteria monitoring for public recreation waters. During 2007–2010, states used monitoring data to support196 public health advisories or beach closures. The information recorded in HABISS and the application of these data to develop a wide range of public health prevention and response activities indicate that cyanobacteria and algae blooms are an environmental public health issue that needs continuing attention. PMID:25826054

The Adaptive-Clustering and Error-Correction Method for Forecasting Cyanobacteria Blooms in Lakes and Reservoirs

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Xiao-zhe Bai

2017-01-01

Full Text Available Globally, cyanobacteria blooms frequently occur, and effective prediction of cyanobacteria blooms in lakes and reservoirs could constitute an essential proactive strategy for water-resource protection. However, cyanobacteria blooms are very complicated because of the internal stochastic nature of the system evolution and the external uncertainty of the observation data. In this study, an adaptive-clustering algorithm is introduced to obtain some typical operating intervals. In addition, the number of nearest neighbors used for modeling was optimized by particle swarm optimization. Finally, a fuzzy linear regression method based on error-correction was used to revise the model dynamically near the operating point. We found that the combined method can characterize the evolutionary track of cyanobacteria blooms in lakes and reservoirs. The model constructed in this paper is compared to other cyanobacteria-bloom forecasting methods (e.g., phase space reconstruction and traditional-clustering linear regression, and, then, the average relative error and average absolute error are used to compare the accuracies of these models. The results suggest that the proposed model is superior. As such, the newly developed approach achieves more precise predictions, which can be used to prevent the further deterioration of the water environment.

Decadal-scale changes of dinoflagellates and diatoms in the anomalous baltic sea spring bloom.

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Riina Klais

Full Text Available The algal spring bloom in the Baltic Sea represents an anomaly from the winter-spring bloom patterns worldwide in terms of frequent and recurring dominance of dinoflagellates over diatoms. Analysis of approximately 3500 spring bloom samples from the Baltic Sea monitoring programs revealed (i that within the major basins the proportion of dinoflagellates varied from 0.1 (Kattegat to >0.8 (central Baltic Proper, and (ii substantial shifts (e.g. from 0.2 to 0.6 in the Gulf of Finland in the dinoflagellate proportion over four decades. During a recent decade (1995-2004 the proportion of dinoflagellates increased relative to diatoms mostly in the northernmost basins (Gulf of Bothnia, from 0.1 to 0.4 and in the Gulf of Finland, (0.4 to 0.6 which are typically ice-covered areas. We hypothesize that in coastal areas a specific sequence of seasonal events, involving wintertime mixing and resuspension of benthic cysts, followed by proliferation in stratified thin layers under melting ice, favors successful seeding and accumulation of dense dinoflagellate populations over diatoms. This head-start of dinoflagellates by the onset of the spring bloom is decisive for successful competition with the faster growing diatoms. Massive cyst formation and spreading of cyst beds fuel the expanding and ever larger dinoflagellate blooms in the relatively shallow coastal waters. Shifts in the dominant spring bloom algal groups can have significant effects on major elemental fluxes and functioning of the Baltic Sea ecosystem, but also in the vast shelves and estuaries at high latitudes, where ice-associated cold-water dinoflagellates successfully compete with diatoms.

Recurrent blooms of Heterosigma akashiwo (Raphidophyceae in the Piraquê Channel, Rodrigo de Freitas Lagoon, southeast Brazil

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S Branco

Full Text Available Six blooms of Heterosigma akashiwo(Raphidophyceae were observed from March 2007 through March 2008 in the Rodrigo de Freitas Lagoon, a semi-confined eutrophic system located in Rio de Janeiro state, southeast Brazil. Vegetative cells of H. akashiwo analysed by optical and electron microscopy showed morphology as described in the literature. The blooms (2.8 × 104 to 4 × 108 cell.L–1 were restricted to the middle section of the Piraquê Channel, which is situated in the northeastern part of the lagoon and receives freshwater inflow. The salinity of subsurface water and the channel depth showed significant negative correlations with H. akashiwo abundances, and appeared to restrict the blooms to this compartment of the lagoon. No fish mortality was associated with the H. akashiwo blooms, nor were brevetoxins detected in a cell extract obtained from the bloom observed on 19 March 2007.

Phytoplankton ice-edge blooms in the marginal ice zone at Princess Astrid Coast in Antarctica

Digital Repository Service at National Institute of Oceanography (India)

Verlecar, X.N.; Dhargalkar, V.K.; Goswami, S.C.; Mhamal, N.P.

dominated the bloom conditions and nannoplankton (5 to 20 mu m) prevail the non-bloom periods while the picoplankton (less than 5 mu m) constituted a minor fraction during most of the period. Weekly changes in phytoplankton showed inverse relationship...

Heterosigma bloom and associated fish kill

Science.gov (United States)

Hershberger, P.K.; Rensel, J.E.; Postel, J.R.; Taub, F.B.

1997-01-01

A bloom of the harmful marine phytoplankton, Heterosigma carterae occurred in upper Case Inlet, south Puget Sound, Washington in late September, 1994, correlating with the presence of at least 35 dead salmon. This marks the first time that this alga has been closely correlated with a wild fish kill; in the past it was thought to be associated with kills of penned fish at fish farms only. We were informed of the presence of a possible harmful algal bloom and dead salinois Ilear the town of Allyn on 27 September and a team was formed to investigate. We arrived at the Allyn waterfront at 17:30 hours the same day. Prior to our arrival, state agency personnel walked approximatcly two miles of shoreline from the powerlines north of the dock, to the mouth of Sherwood Creek and conducted the only official count of dead fish present along the shore consisting of 12 coho salmon (Oncorhynchus kisutch), 11 chum salmon (Oncorhynchus keta), 12 chinook salmon (Oncorhynchus tschawytscha), one flat fish, and one sculpin on the morning of 9/27. Since previous harmful blooms of Heterosigma have resultedin the majority of net penreared salmon sinking to the bottom of pens, and only approximately two miles of shoreline were sampled, it is suspected that many more exposed fish may have succumbed than were counted. Witnesses who explored the east side of the bay reported seeing many dead salmon there as well, but no counts were made. State agency personnel who observed the fish kill reported seeing “dying fish coming to the beach, gulping at the surface, trying to get out of the water” Scavengers were seen consuming the salmon carcasses; these included two harbor seals, a house cat, and Hymenopteran insects. None suffered any noticeable acute ill effects. Although precise cause of death has not been ascertained, visual inspection of the reproductive organs from a deceased male chum salmon found on the shore at Allyn confirmed that the fish was not yet reproductively mature and

Winter atmospheric circulation signature for the timing of the spring bloom of diatoms in the North Sea

Science.gov (United States)

Lohmann, Gerrit; Wiltshire, Karen

2015-04-01

Analysing long-term diatom data from the German Bight and observational climate data for the period 1962-2005, we found a close connection of the inter-annual variation of the timing of the spring bloom with the boreal winter atmospheric circulation. We examined the fact that high diatom counts of the spring bloom tended to occur later when the atmospheric circulation was characterized by winter blocking over Scandinavia. The associated pattern in the sea level pressure showed a pressure dipole with two centres located over the Azores and Norway and was tilted compared to the North Atlantic Oscillation. The bloom was earlier when the cyclonic circulation over Scandinavia allowed an increased inflow of Atlantic water into the North Sea which is associated with clearer, more marine water, and warmer conditions. The bloom was later when a more continental atmospheric flow from the east was detected. At Helgoland Roads, it seems that under turbid water conditions (= low light) zooplankton grazing can affect the timing of the phytoplankton bloom negatively. Warmer water temperatures will facilitate this. Under clear water conditions, light will be the main governing factor with regard to the timing of the spring bloom. These different water conditions are shown here to be mainly related to large-scale weather patterns. We found that the mean diatom bloom could be predicted from the sea level pressure one to three months in advance. Using historical pressure data, we derived a proxy for the timing of the spring bloom over the last centuries, showing an increased number of late (proxy-) blooms during the eighteenth century when the climate was considerably colder than today. We argue that these variations are important for the interpretation of inter-annual to centennial variations of biological processes. This is of particular interest when considering future scenarios, as well to considerations on past and future effects on the primary production and food webs.

Dog Poisonings Associated with a Microcystis aeruginosa Bloom in the Netherlands

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Miquel Lürling

2013-03-01

Full Text Available In early autumn 2011, three dogs died after they had been exposed to a Microcystis aeruginosa bloom on Lake Amstelmeer, The Netherlands. The cyanobacterial scum from the lake contained up to 5.27 × 103 μg g−1 dry-weight microcystin, the vomit of one of the dogs contained on average 94 µg microcystin g−1 dry-weight. In both cases, microcystin-LR was the most abundant variant. This is the first report of dog deaths associated with a Microcystis bloom and microcystin poisoning in The Netherlands.

Proteomic Analysis of Hepatic Tissue of Cyprinus carpio L. Exposed to Cyanobacterial Blooms in Lake Taihu, China

Science.gov (United States)

Jiang, Jinlin; Wang, Xiaorong; Shan, Zhengjun; Yang, Liuyan; Zhou, Junying; Bu, Yuanqin

2014-01-01

With the rapid development of industry and agriculture and associated pollution, the cyanobacterial blooms in Lake Taihu have become a major threat to aquatic wildlife and human health. In this study, the ecotoxicological effects of cyanobacterial blooms on cage-cultured carp (Cyprinus carpio L.) in Meiliang Bay of Lake Taihu were investigated. Microcystins (MCs), major cyanobacterial toxins, have been detected in carp cultured at different experimental sites of Meiliang Bay. We observed that the accumulation of MCs in carp was closely associated with several environmental factors, including temperature, pH value, and density of cyanobacterial blooms. The proteomic profile of carp liver exposed to cyanobacterial blooms was analyzed using two-dimensional difference in-gel electrophoresis (2D-DIGE) and mass spectrometry. The toxic effects of cyanobacterial blooms on carp liver were similar to changes caused by MCs. MCs were transported into liver cells and induced the excessive production of reactive oxygen species (ROS). MCs and ROS inhibited protein phosphatase and aldehyde dehydrogenase (ALDH), directly or indirectly resulting in oxidative stress and disruption of the cytoskeleton. These effects further interfered with metabolic pathways in the liver through the regulation of series of related proteins. The results of this study indicated that cyanobacterial blooms pose a major threat to aquatic wildlife in Meiliang Bay in Lake Taihu. These results provided evidence of the molecular mechanisms underlying liver damage in carp exposed to cyanobacterial blooms. PMID:24558380

Comparison of the efficacy of MODIS and MERIS data for detecting cyanobacterial blooms in the southern Caspian Sea.

Science.gov (United States)

Moradi, Masoud

2014-10-15

Medium Resolution Imaging Spectrometer (MERIS) data, Moderate Resolution Imaging Spectroradiometer (MODIS) data, and hydro-biological measurements were used to detect two very severe blooms in the southern Caspian Sea in 2005 and 2010. The MERIS Cyanobacteria Index (CIMERIS) was more reliable for detecting cyanobacterial blooms. The CIMERIS and MODIS cyanobacteria indices (CIMODIS) were compared in an effort to find a reliable method for detecting future blooms, as MERIS data were not available after April 2012. The CIMODIS had a linear relationship with and similar spatial patterns to the CIMERIS. On the CIMODIS images, extremely high biomass cyanobacteria patches were masked. A comparison of classified in situ data with the CIMODIS and Floating Algal Index (FAI) from four images of a severe bloom event in 2005 showed that the FAI is a reliable index for bloom detection over extremely dense patches. The corrected CIMODIS, the MODIS FAI and in situ data are adequate tools for cyanobacterial bloom monitoring in the southern Caspian Sea. Copyright © 2014 Elsevier Ltd. All rights reserved.

Retreived bacteria from Noctiluca miliaris (green) bloom of the northeastern Arabian Sea

Science.gov (United States)

Basu, Subhajit; Matondkar, S. G. Prabhu; Furtado, Irene

2013-01-01

In recent years, seasonal blooms of the dinoflagellate Noctiluca miliaris have appeared in the open-waters of the northern Arabian Sea (NAS). This study provides the first characterization of bacteria from a seasonal bloom of green Noctiluca of NAS (20°N-17°N and 64°E-70°E), during the spring-inter-monsoon cruise of Sagar Sampada 253, in March 2007. Bacterial growth as assessed by most-probable number (MPN) and plate counts, revealed `variable-physiotypes' over a wide range of salinities (0%-25% w/v NaCl), pH levels (5-8.5), and organic nutrient strengths, in comparison to non-bloom waters. MPN indices of bacteria in surface waters of bloom stations *DWK and *PRB, corresponded to (3.08-4.41)×103 cells/mL at 3.5% NaCl (w/v), and (2.82-9.49)×102 cells/mL at 25% (w/v) NaCl in tryptone-yeast extract broth (TYE). Plate counts were (1.12-4)×106 CFU/mL at 0% (w/v) NaCl, (1.28-3.9)×106 CFU/mL at 3.5% (w/v) NaCl, and (0.4-7)×104 CFU/mL at 25% NaCl (w/v) on TYE. One-tenth-strength Zobell's gave (0.6-3.74)×105 CFU/mL at pH 5 to (3.58-7.5)×105 CFU/mL at pH 8.5. These bacteria were identified to the genera Bacillus, Cellulomonas, Staphylococcus, Planococcus, Dietzia, Virgibacillus, Micrococcus, Sporosarcinae, Leucobacter, and Halomonas. The identity of three strains (GUFBSS253N2, GUFBSS253N30, and GUFBSS253N84) was confirmed through 16S rDNA sequence homology as Bacillus cohnii, Bacillus flexus, and Bacillus cereus. The ˜2-3-fold higher plate counts of culturable bacteria from the open-waters of the NAS indicate that these bacteria could critically determine the biogeochemical dynamics of the bloom and its milieu. The role of these bacteria in sustaining/terminating the bloom is under evaluation.

Differential response of coral communities to Caulerpa spp. bloom in the reefs of Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Manikandan, B.; Ravindran, J.

of this study suggested that the recovery of a coral reef after a macroalgal bloom largely depends on coral species composition and the frequency of stress events. A further study linking macroalgal bloom to its specific cause is essential for the successful...

Bloom dynamics and life cycle strategies of two toxic dinoflagellates in a coastal upwelling system (NW Iberian Peninsula)

Science.gov (United States)

Bravo, Isabel; Fraga, Santiago; Isabel Figueroa, Rosa; Pazos, Yolanda; Massanet, Ana; Ramilo, Isabel

2010-02-01

A study of Gymnodinium catenatum and Alexandrium minutum blooms on the Galician coast was conducted from 2005 to 2007 in order to increase knowledge of the mechanisms governing recurrent blooms of these species. Considerable differences in their bloom dynamics were observed. G. catenatum blooms occurred in autumn and winter, following the pattern previously reported in the literature: they began off-shore and were advected to the Galician rias when a relaxation of the coastal upwelling occurred. On the other hand, A. minutum blooms developed inside embayments in spring and summer during the upwelling season and were associated with water stability and stratification. Both the vegetative population and the cyst distribution of A. minutum were related to less saline water from freshwater river outputs, which support a saline-gradient relationship postulated herein for this species. Dinoflagellates may produce both long-term double-walled cysts (resting) and short-term pellicle cysts. Resting cyst deposition and distribution in sediments showed that seeding occurred during the blooms of both species. However, the relationship between the cyst distribution in the sediments in Baiona Bay and the intensity and occurrence of G. catenatum blooms, suggests that the latter are not directly related to resting cyst germination. Moreover, the results presented in the present study point to other difference between the two species, such as the detection of pellicle cysts only for A. minutum. Finally, we discuss how the life cycle strategies of these two species may help to explain the different mechanisms of bloom formation reported herein.

Investigation of the 2006 Alexandrium fundyense Bloom in the Gulf of Maine: In situ Observations and Numerical Modeling.

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Li, Yizhen; He, Ruoying; McGillicuddy, Dennis J; Anderson, Donald M; Keafer, Bruce A

2009-09-30

In situ observations and a coupled bio-physical model were used to study the germination, initiation, and development of the Gulf of Maine (GOM) Alexandrium fundyense bloom in 2006. Hydrographic measurements and comparisons with GOM climatology indicate that 2006 was a year with normal coastal water temperature, salinity, current and river runoff conditions. A. fundyense cyst abundance in bottom sediments preceding the 2006 bloom was at a moderate level compared to other recent annual cyst survey data. We used the coupled bio-physical model to hindcast coastal circulation and A. fundyense cell concentrations. Field data including water temperature, salinity, velocity time series and surface A. fundyense cell concentration maps were applied to gauge the model's fidelity. The coupled model is capable of reproducing the hydrodynamics and the temporal and spatial distributions of A. fundyense cell concentration reasonably well. Model hindcast solutions were further used to diagnose physical and biological factors controlling the bloom dynamics. Surface wind fields modulated the bloom's horizontal and vertical distribution. The initial cyst distribution was found to be the dominant factor affecting the severity and the interannual variability of the A. fundyense bloom. Initial cyst abundance for the 2006 bloom was about 50% of that prior to the 2005 bloom. As the result, the time-averaged gulf-wide cell concentration in 2006 was also only about 60% of that in 2005. In addition, weaker alongshore currents and episodic upwelling-favorable winds in 2006 reduced the spatial extent of the bloom as compared with 2005.

Host-Specificity and Dynamics in Bacterial Communities Associated with Bloom-Forming Freshwater Phytoplankton

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Bagatini, Inessa Lacativa; Eiler, Alexander; Bertilsson, Stefan; Klaveness, Dag; Tessarolli, Letícia Piton; Vieira, Armando Augusto Henriques

2014-01-01

Many freshwater phytoplankton species have the potential to form transient nuisance blooms that affect water quality and other aquatic biota. Heterotrophic bacteria can influence such blooms via nutrient regeneration but also via antagonism and other biotic interactions. We studied the composition of bacterial communities associated with three bloom-forming freshwater phytoplankton species, the diatom Aulacoseira granulata and the cyanobacteria Microcystis aeruginosa and Cylindrospermopsis raciborskii. Experimental cultures incubated with and without lake bacteria were sampled in three different growth phases and bacterial community composition was assessed by 454-Pyrosequencing of 16S rRNA gene amplicons. Betaproteobacteria were dominant in all cultures inoculated with lake bacteria, but decreased during the experiment. In contrast, Alphaproteobacteria, which made up the second most abundant class of bacteria, increased overall during the course of the experiment. Other bacterial classes responded in contrasting ways to the experimental incubations causing significantly different bacterial communities to develop in response to host phytoplankton species, growth phase and between attached and free-living fractions. Differences in bacterial community composition between cyanobacteria and diatom cultures were greater than between the two cyanobacteria. Despite the significance, major differences between phytoplankton cultures were in the proportion of the OTUs rather than in the absence or presence of specific taxa. Different phytoplankton species favoring different bacterial communities may have important consequences for the fate of organic matter in systems where these bloom forming species occur. The dynamics and development of transient blooms may also be affected as bacterial communities seem to influence phytoplankton species growth in contrasting ways. PMID:24465807

Future Climate Impacts on Harmful Algal Blooms in an Agriculturally Dominated Ecosystem

Science.gov (United States)

Aloysius, N. R.; Martin, J.; Ludsin, S.; Stumpf, R. P.

2015-12-01

Cyanobacteria blooms have become a major problem worldwide in aquatic ecosystems that receive excessive runoff of limiting nutrients from terrestrial drainage. Such blooms often are considered harmful because they degrade ecosystem services, threaten public health, and burden local economies. Owing to changing agricultural land-use practices, Lake Erie, the most biologically productive of the North American Great Lakes, has begun to undergo a re-eutrophication in which the frequency and extent of harmful algal blooms (HABs) has increased. Continued climate change has been hypothesized to magnify the HAB problem in Lake Erie in the absence of new agricultural management practices, although this hypothesis has yet to be formally tested empirically. Herein, we tested this hypothesis by predicting how the frequency and extent of potentially harmful cyanobacteria blooms will change in Lake Erie during the 21st century under the Intergovernmental Panel on Climate Change Fifth Assessment climate projections in the region. To do so, we used 80 ensembles of climate projections from 20 Global Climate Models (GCMs) and two greenhouse gas emission scenarios (moderate reduction, RCP4.5; business-as-usual, RCP8.5) to drive a spatiotemporally explicit watershed-hydrology model that was linked to several statistical predictive models of annual cyanobacteria blooms in Lake Erie. Owing to anticipated increases in precipitation during spring and warmer temperatures during summer, our ensemble of predictions revealed that, if current land-management practices continue, the frequency of severe HABs in Lake Erie will increase during the 21st century. These findings identify a real need to consider future climate projections when developing nutrient reduction strategies in the short term, with adaptation also needing to be encouraged under both greenhouse gas emissions scenarios in the absence of effective nutrient mitigation strategies.

How physiological and physical processes contribute to the phenology of cyanobacterial blooms in large shallow lakes: A new Euler-Lagrangian coupled model.

Science.gov (United States)

Feng, Tao; Wang, Chao; Wang, Peifang; Qian, Jin; Wang, Xun

2018-09-01

Cyanobacterial blooms have emerged as one of the most severe ecological problems affecting large and shallow freshwater lakes. To improve our understanding of the factors that influence, and could be used to predict, surface blooms, this study developed a novel Euler-Lagrangian coupled approach combining the Eulerian model with agent-based modelling (ABM). The approach was subsequently verified based on monitoring datasets and MODIS data in a large shallow lake (Lake Taihu, China). The Eulerian model solves the Eulerian variables and physiological parameters, whereas ABM generates the complete life cycle and transport processes of cyanobacterial colonies. This model ensemble performed well in fitting historical data and predicting the dynamics of cyanobacterial biomass, bloom distribution, and area. Based on the calculated physical and physiological characteristics of surface blooms, principal component analysis (PCA) captured the major processes influencing surface bloom formation at different stages (two bloom clusters). Early bloom outbreaks were influenced by physical processes (horizontal transport and vertical turbulence-induced mixing), whereas buoyancy-controlling strategies were essential for mature bloom outbreaks. Canonical correlation analysis (CCA) revealed the combined actions of multiple environment variables on different bloom clusters. The effects of buoyancy-controlling strategies (ISP), vertical turbulence-induced mixing velocity of colony (VMT) and horizontal drift velocity of colony (HDT) were quantitatively compared using scenario simulations in the coupled model. VMT accounted for 52.9% of bloom formations and maintained blooms over long periods, thus demonstrating the importance of wind-induced turbulence in shallow lakes. In comparison, HDT and buoyancy controlling strategies influenced blooms at different stages. In conclusion, the approach developed here presents a promising tool for understanding the processes of onshore/offshore algal

Spatial analysis of freshwater lake cyanobacteria blooms, 2008-2011

Science.gov (United States)

Background/Question/Methods Cyanobacteria and associated harmful algal blooms cause significant social, economic, and environmental impacts. Cyanobacteria synthesize hepatotoxins, neurotoxins, and dermatotoxins, affecting the health of humans and other species. The Cyanobacteria ...

Coccolithophore populations and their contribution to carbonate export during an annual cycle in the Australian sector of the Antarctic zone

Science.gov (United States)

Rigual Hernández, Andrés S.; Flores, José A.; Sierro, Francisco J.; Fuertes, Miguel A.; Cros, Lluïsa; Trull, Thomas W.

2018-03-01

The Southern Ocean is experiencing rapid and relentless change in its physical and biogeochemical properties. The rate of warming of the Antarctic Circumpolar Current exceeds that of the global ocean, and the enhanced uptake of carbon dioxide is causing basin-wide ocean acidification. Observational data suggest that these changes are influencing the distribution and composition of pelagic plankton communities. Long-term and annual field observations on key environmental variables and organisms are a critical basis for predicting changes in Southern Ocean ecosystems. These observations are particularly needed, since high-latitude systems have been projected to experience the most severe impacts of ocean acidification and invasions of allochthonous species. Coccolithophores are the most prolific calcium-carbonate-producing phytoplankton group playing an important role in Southern Ocean biogeochemical cycles. Satellite imagery has revealed elevated particulate inorganic carbon concentrations near the major circumpolar fronts of the Southern Ocean that can be attributed to the coccolithophore Emiliania huxleyi. Recent studies have suggested changes during the last decades in the distribution and abundance of Southern Ocean coccolithophores. However, due to limited field observations, the distribution, diversity and state of coccolithophore populations in the Southern Ocean remain poorly characterised. We report here on seasonal variations in the abundance and composition of coccolithophore assemblages collected by two moored sediment traps deployed at the Antarctic zone south of Australia (2000 and 3700 m of depth) for 1 year in 2001-2002. Additionally, seasonal changes in coccolith weights of E. huxleyi populations were estimated using circularly polarised micrographs analysed with C-Calcita software. Our findings indicate that (1) coccolithophore sinking assemblages were nearly monospecific for E. huxleyi morphotype B/C in the Antarctic zone waters in 2001-2002; (2

If You Don't Know Who Wrote it, You Won't Understand It: Lessons Learned from Benjamin S. Bloom.

Science.gov (United States)

Anderson, Lorin W.

1996-01-01

Describes how one college professor's relationship with author Benjamin Bloom influenced his thinking about education and his reading of education. Explains how the professor's personal and professional understandings of Bloom influenced his reading of virtually all of Bloom's writings, and discusses three points that are central to understanding…

Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

Science.gov (United States)

Lucas, L.V.; Koseff, Jeffrey R.; Monismith, Stephen G.; Thompson, J.K.

2009-01-01

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions. ?? 2008 Elsevier B.V.

Ulva blooms in the southwestern Gulf of California: Reproduction and biomass

Science.gov (United States)

Chávez-Sánchez, Tonatiuh; Piñón-Gimate, Alejandra; Serviere-Zaragoza, Elisa; López-Bautista, Juan Manuel; Casas-Valdez, Margarita

2018-01-01

Ulvacean blooms are generally characterized by one or more Ulva species, some of which are common to blooms across a broad geographic range. In tropical environments the identified stimuli that induce reproductive development of Ulva are restricted to temperature, salinity, dehydration and fragmentation. Culture studies have been prolific in describing the reproduction of Ulva species, but its reproductive changes in natural environment have not been described yet. Hence, seasonal changes were described in reproductive stages and their relationship with biomass and environmental factors of Ulva species at four macroalgal blooms in a subtropical bay. Eight Ulva species were found: U. acanthophora, U. clathrata, U. flexuosa, U. intestinalis, U. lactuca, U. lobata, U. nematoidea and U. rigida. Reproductive stage and biomass varied according to site and season. Five species showed four reproductive stages (vegetative, thallus with fully differentiated zooids in formation and empty cells after zooids release); for the remaining species only vegetative thalli were found. Ulva rigida showed the highest biomass values, followed by U. acanthophora, following a seasonal pattern.

Presence of microcystin during events of algal blooms in Araruama Lagoon

Directory of Open Access Journals (Sweden)

Manildo Marcião de Oliveira

2012-04-01

Full Text Available Algal blooms are phenomena produced by anthropogenic activities, despite the possible natural causes. In Araruama Lagoon, blooms occurred in 2005 and in subsequent years, causing profound changes in phytoplankton communities. These episodes triggered events of extensive fish mortality associated with low levels of dissolved oxygen. Another adverse effect associated with blooms is the production of harmful toxins such as phycotoxins produced by eukaryotic microalgae and cyanotoxins produced by cyanobacteria. Samples of fish (mullet and menhaden and seston showed levels of microcystin by enzyme-linked immunosorbent assay (ELISA, also a seston sample (São Pedro d'Aldeia on 08/22/2007, in a period not related to fish mortality, showed cells which contained genes encoding microcystin synthetase, an enzyme responsible for the synthesis of microcystin. The succession of microalgae with the concomitant presence of potentially toxic cyanobacteria draws attention to the risk of chronic exposure by the population that uses fish as their main protein source.

Variability in the mechanisms controlling Southern Ocean phytoplankton bloom phenology in an ocean model and satellite observations

Science.gov (United States)

Rohr, Tyler; Long, Matthew C.; Kavanaugh, Maria T.; Lindsay, Keith; Doney, Scott C.

2017-05-01

A coupled global numerical simulation (conducted with the Community Earth System Model) is used in conjunction with satellite remote sensing observations to examine the role of top-down (grazing pressure) and bottom-up (light, nutrients) controls on marine phytoplankton bloom dynamics in the Southern Ocean. Phytoplankton seasonal phenology is evaluated in the context of the recently proposed "disturbance-recovery" hypothesis relative to more traditional, exclusively "bottom-up" frameworks. All blooms occur when phytoplankton division rates exceed loss rates to permit sustained net population growth; however, the nature of this decoupling period varies regionally in Community Earth System Model. Regional case studies illustrate how unique pathways allow blooms to emerge despite very poor division rates or very strong grazing rates. In the Subantarctic, southeast Pacific small spring blooms initiate early cooccurring with deep mixing and low division rates, consistent with the disturbance-recovery hypothesis. Similar systematics are present in the Subantarctic, southwest Atlantic during the spring but are eclipsed by a subsequent, larger summer bloom that is coincident with shallow mixing and the annual maximum in division rates, consistent with a bottom-up, light limited framework. In the model simulation, increased iron stress prevents a similar summer bloom in the southeast Pacific. In the simulated Antarctic zone (70°S-65°S) seasonal sea ice acts as a dominant phytoplankton-zooplankton decoupling agent, triggering a delayed but substantial bloom as ice recedes. Satellite ocean color remote sensing and ocean physical reanalysis products do not precisely match model-predicted phenology, but observed patterns do indicate regional variability in mechanism across the Atlantic and Pacific.

Phytoplankton calcification as an effective mechanism to prevent cellular calcium poisoning

Science.gov (United States)

Müller, M. N.; Ramos, J. Barcelos e.; Schulz, K. G.; Riebesell, U.; Kaźmierczak, J.; Gallo, F.; Mackinder, L.; Li, Y.; Nesterenko, P. N.; Trull, T. W.; Hallegraeff, G. M.

2015-08-01

Marine phytoplankton has developed the remarkable ability to tightly regulate the concentration of free calcium ions in the intracellular cytosol at a level of ~ 0.1 μmol L-1 in the presence of seawater Ca2+ concentrations of 10 mmol L-1. The low cytosolic calcium ion concentration is of utmost importance for proper cell signalling function. While the regulatory mechanisms responsible for the tight control of intracellular Ca2+ concentration are not completely understood, phytoplankton taxonomic groups appear to have evolved different strategies, which may affect their ability to cope with changes in seawater Ca2+ concentrations in their environment on geological time scales. For example, the Cretaceous (145 to 66 Ma ago), an era known for the high abundance of coccolithophores and the production of enormous calcium carbonate deposits, exhibited seawater calcium concentrations up to four times present-day levels. We show that calcifying coccolithophore species (Emiliania huxleyi, Gephyrocapsa oceanica and Coccolithus braarudii) are able to maintain their relative fitness (in terms of growth rate and photosynthesis) at simulated Cretaceous seawater calcium concentrations, whereas these rates are severely reduced under these conditions in some non-calcareous phytoplankton species (Chaetoceros sp., Ceratoneis closterium and Heterosigma akashiwo). Most notably, this also applies to a non-calcifying strain of E. huxleyi which displays a calcium-sensitivity similar to the non-calcareous species. We hypothesize that the process of calcification in coccolithophores provides an efficient mechanism to prevent cellular calcium poisoning and thereby offered a potential key evolutionary advantage, responsible for the proliferation of coccolithophores during times of high seawater calcium concentrations.

Harmful Algal Blooms of the West Florida Shelf and Campeche Bank: Visualization and Quantification using Remote Sensing Methods

Science.gov (United States)

Soto Ramos, Inia Mariel

Harmful Algal Blooms (HABs) in the Gulf of Mexico (GOM) are natural phenomena that can have negative impacts on marine ecosystems on which human health and the economy of some Gulf States depends. Many of the HABs in the GOM are dominated by the toxic dinoflagellate Karenia brevis. Non-toxic phytoplankton taxa such as Scrippsiella sp. also form intense blooms off the Mexican coast that result in massive fish mortality and economic losses, particularly as they may lead to anoxia. The main objectives of this dissertation were to (1) evaluate and improve the techniques developed for detection of Karenia spp. blooms on the West Florida Shelf (WFS) using satellite remote sensing methods, (2) test the use of these methods for waters in the GOM, and (3) use the output of these techniques to better understand the dynamics and evolution of Karenia spp. blooms in the WFS and off Mexico. The first chapter of this dissertation examines the performance of several Karenia HABs detection techniques using Moderate Resolution Imaging Spectroradiometer (MODIS) satellite images and historical ground truth observations collected on the WFS from August 2002 to December 2011. A total of 2323 in situ samples collected by the Florida Fish and Wildlife Research Institute to test for Karenia spp. matched pixels with valid ocean color satellite observations over this period. This dataset was used to systematically optimize variables and coefficients used in five published HAB detection methods. Each technique was tested using a set of metrics that included the F-Measure (FM). Before optimization, the average FM for all techniques was 0.47. After optimization, the average FM increased to 0.59, and false positives decreased ~50%. The addition of a Fluorescence Line Height (FLH) criterion improved the performance of every method. A new practical method was developed using a combination of FLH and Remote Sensing Reflectance at 555 nm (Rrs555-FLH). The new method resulted in an FM of 0.62 and 3

Enhancement of thermal blooming effect on free space propagation of high power CW laser beam

Science.gov (United States)

Kashef, Tamer M.; Mokhtar, Ayman M.; Ghoniemy, Samy A.

2018-02-01

In this paper, we present an enhanced model to predict the effect of thermal blooming and atmospheric turbulence, on high energy laser beams free space propagation. We introduce an implementation technique for the proposed mathematical models describing the effect of thermal blooming and atmospheric turbulence including wind blowing, and how it effect high power laser beam power, far field pattern, phase change effect and beam quality . An investigated model of adaptive optics was introduced to study how to improve the wave front and phase distortion caused by thermal blooming and atmospheric turbulence, the adaptive optics model with Actuator influence spacing 3 cm the that shows observed improvement in the Strehl ratio and in wave front and phase of the beam. These models was implemented using cooperative agents relying on GLAD software package. Without taking in consideration the effect of thermal blooming It was deduced that the beam at the source takes the Gaussian shape with uniform intensity distribution, we found that the beam converge on the required distance 4 km using converging optics, comparing to the laser beam under the effect of thermal blooming the far field pattern shows characteristic secondary blip and "sugar scoop" effect which is characteristic of thermal blooming. It was found that the thermal blooming causes the beam to steer many centimeters and to diverge beyond about 1.8 km than come to a focus at 4 km where the beam assumed to be focused on the required target. We assume that this target is moving at v = (4,-4) m/sec at distance 4 km and the wind is moving at v = (-10,-10) m/sec, it was found that the effect will be strongest when wind and target movement are at the same velocity. GLAD software is used to calculate the attenuation effects of the atmosphere as well as the phase perturbations due to temperature change in the air and effects caused as the beam crosses through the air due to wind and beam steering.

Heterotrophic bacterial responses to the winter–spring phytoplankton bloom in open waters of the NW Mediterranean

KAUST Repository

Gomes, Ana

2014-12-03

The response of planktonic heterotrophic prokaryotes to the NW Mediterranean winter–spring offshore phytoplankton bloom was assessed in 3 cruises conducted in March, April–May and September 2009. Bulk measurements of phytoplankton and bacterioplankton biomass and production were complemented with an insight into bacterial physiological structure by single-cell analysis of nucleic acid content [low (LNA) vs. high (HNA)] and membrane integrity (“Live” vs. “Dead” cells). Bacterial production empirical conversion factors (0.82±0.25 SE kg C mol leucine−1) were almost always well below the theoretical value. Major differences in most microbial variables were found among the 3 periods, which varied from extremely high phytoplankton biomass and production during the bloom in March (>1 g C m−2 d−1 primary production) to typically oligotrophic conditions during September stratification (<200 mg C m−2 d−1). In both these periods bacterial production was ~30 mg C m−2 d−1 while very large bacterial production (mean 228, with some stations exceeding 500 mg C m−2 d−1) but low biomass was observed during the April–May post-bloom phase. The contribution of HNA (30–67%) and “Live” cells (47–97%) were temporally opposite in the study periods, with maxima in March and September, respectively. Different relationships were found between physiological structure and bottom-up variables, with HNA bacteria apparently more responsive to phytoplankton only during the bloom, coinciding with larger average cell sizes of LNA bacteria. Moderate phytoplankton–bacterioplankton coupling of biomass and activity was only observed in the bloom and post-bloom phases, while relationships between both compartments were not significant under stratification. With all data pooled, bacteria were only weakly bottom-up controlled. Our analyses show that the biomass and production of planktonic algae and bacteria followed opposite paths in the transition from bloom to

Margalef's mandala and phytoplankton bloom strategies

Science.gov (United States)

Wyatt, Timothy

2014-03-01

Margalef's mandala maps phytoplankton species into a phase space defined by turbulence (A) and nutrient concentrations (Ni); these are the hard axes. The permutations of high and low A and high and low Ni divide the space into four domains. Soft axes indicate some ecological dynamics. A main sequence shows the normal course of phytoplankton succession; the r-K axis of MacArthur and Wilson runs parallel to it. An alternative successional sequence leads to the low A-high Ni domain into which many red tide species are mapped. Astronomical and biological time are implicit. A mathematical transformation of the mandala (rotation) links it to the classical bloom models of Sverdrup (time) and Kierstead and Slobodkin (space). Both rarity and the propensity to form red tides are considered to be species characters, meaning that maximum population abundance can be a target of natural selection. Equally, both the unpredictable appearance of bloom species and their short-lived appearances may be species characters. There may be a correlation too between these features and long-lived dormant stages in the life-cycle; then the vegetative planktonic phase is the 'weak link' in the life-cycle. Red tides are thus due to species which have evolved suites of traits which result in specific demographic strategies.

Dynamics of Bacterial and Fungal Communities during the Outbreak and Decline of an Algal Bloom in a Drinking Water Reservoir

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Haihan Zhang

2018-02-01

Full Text Available The microbial communities associated with algal blooms play a pivotal role in organic carbon, nitrogen and phosphorus cycling in freshwater ecosystems. However, there have been few studies focused on unveiling the dynamics of bacterial and fungal communities during the outbreak and decline of algal blooms in drinking water reservoirs. To address this issue, the compositions of bacterial and fungal communities were assessed in the Zhoucun drinking water reservoir using 16S rRNA and internal transcribed spacer (ITS gene Illumina MiSeq sequencing techniques. The results showed the algal bloom was dominated by Synechococcus, Microcystis, and Prochlorothrix. The bloom was characterized by a steady decrease of total phosphorus (TP from the outbreak to the decline period (p < 0.05 while Fe concentration increased sharply during the decline period (p < 0.05. The highest algal biomass and cell concentrations observed during the bloom were 51.7 mg/L and 1.9×108 cell/L, respectively. The cell concentration was positively correlated with CODMn (r = 0.89, p = 0.02. Illumina Miseq sequencing showed that algal bloom altered the water bacterial and fungal community structure. During the bloom, the dominant bacterial genus were Acinetobacter sp., Limnobacter sp., Synechococcus sp., and Roseomonas sp. The relative size of the fungal community also changed with algal bloom and its composition mainly contained Ascomycota, Basidiomycota and Chytridiomycota. Heat map profiling indicated that algal bloom had a more consistent effect upon fungal communities at genus level. Redundancy analysis (RDA also demonstrated that the structure of water bacterial communities was significantly correlated to conductivity and ammonia nitrogen. Meanwhile, water temperature, Fe and ammonia nitrogen drive the dynamics of water fungal communities. The results from this work suggested that water bacterial and fungal communities changed significantly during the outbreak and decline of

Greener on the Other Side: How Increased Urea Use may Promote Cyanobacterial Blooms

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Erratt, K. J.; Creed, I. F.; Trick, C. G.

2017-12-01

The frequency of freshwater cyanobacterial blooms is on the rise in temperate regions around the world. The widespread use of chemical fertilizers linked to modern agricultural practices has enhanced the fertility of surface waters promoting the expansion of cyanobacteria dominated harmful algal blooms. While phosphorus (P) has been recognized as the principal agent regulating phytoplankton productivity in inland waters, elevated P is not the universal trigger for bloom initiation. P fertilizer applications across the globe have been outpaced by nitrogen (N) fertilizer use. Not only has the load of N entering surface waters increased, but its chemical composition has been altered. The use of inorganic-N fertilizers has been waned in favor of urea-based products, with urea now accounting for more than half of total N-fertilizer applications worldwide. This contemporary shift in fertilizer usage has coincided with the rise of cyanobacteria dominated harmful algal blooms in freshwaters. Here, we examined the relative success of urea as a N-source relative to inorganic N forms (NO3-, NH4+) for three common bloom-forming species of cyanobacteria: Microcystis aeruginosa, Dolichospermum flos-aque, and Synechococcus sp. We found that (1) urea was consistently drawdown more rapidly relative to inorganic N substrates, suggesting that cyanobacteria exhibit a preference for urea over inorganic N forms; (2) cyanobacteria consume urea in excess of cellular requirements; and (3) urea may offer cyanobacteria a competitive edge over eukaryotic algae by enhancing light absorption capabilities. As we push forward into the 21st century, our reliance on urea-based fertilizers is projected to escalate and it is critical that we understand the unintended consequences urea discharge could be having on receiving freshwaters.

Mitigating cyanobacterial blooms: how effective are 'effective microorganisms'?

NARCIS (Netherlands)

Lürling, M.F.L.L.W.; Tolman, Y.; Euwe, M.

2009-01-01

This study examined the effects of 'Effective Microorganisms (EM)' on the growth of cyanobacteria, and their ability to terminate cyanobacterial blooms. The EM was tested in the form of 'mudballs' or 'Bokashi-balls', and as a suspension (EM-A) in laboratory experiments. No growth inhibition was

Ocean colour remote sensing of harmful algal blooms in the Benguela system

CSIR Research Space (South Africa)

Bernard, S

2014-01-01

Full Text Available mortalities of tons of rock lobster and other marine life (Cockcroft et al., 2000). Other ecosystem impacts may be more subtle and difficult to quantify, and may include altered food web interac-tions and habitats. The poor food source provided by blooms... as afforded by the bloom resulted in anoxia through the entire water column. Large fish and lobster mortalities were consequently observed off the Berg River estuary and adjacent beaches on the 5 May 2009. Termination of the boom was as...

Intense blooms of Trichodesmium erythraeum (Cyanophyta) in the open waters along east coast of India

Digital Repository Service at National Institute of Oceanography (India)

Jyothibabu, R.; Madhu, N.V.; Murukesh, N.; Haridas, P.; Nair, K.K.C.; Venugopal, P.

° 44'N, 89° 04'), both along east coast of India. Nutrients (nitrate, phosphate, silicate) concentration in the upper 30 m of the water column showed very low values. High-integrated primary production (Bloom 1- 2160 mgC m-2 d-1, Bloom 2-1740 mgC m-2 d...

PRE-SERVICE MATHEMATICS TEACHERS’ CONCEPTION OF HIGHER-ORDER THINKING LEVEL IN BLOOM'S TAXONOMY

OpenAIRE

Damianus D Samo

2017-01-01

The purpose of this study is to explore pre-service mathematics teachers' conception of higher-order thinking in Bloom's Taxonomy, to explore pre-service mathematics teachers' ability in categorizing six cognitive levels of Bloom's Taxonomy as lower-order thinking and higher-order thinking, and pre-service mathematics teachers' ability in identifying some questionable items as lower-order and higher-order thinking. The higher-order thinking is the type of non-algorithm thinking which include ...

El Niño-related offshore phytoplankton bloom events around the Spratley Islands in the South China Sea

Science.gov (United States)

Isoguchi, Osamu; Kawamura, Hiroshi; Ku-Kassim, Ku-Yaacob

2005-11-01

Satellite chlorophyll-a (Chl-a) observations reveal offshore phytoplankton bloom events with high Chl-a (>1 mg m-3) spreading over 300 km off the coasts around the Spratley Islands in the South China Sea (SCS) during the spring of 1998. The bloom entails anomalous wind jet and sea surface temperature (SST) cooling, suggesting that the wind jet-induced mixing and/or offshore upwelling bring about the cooling and the bloom through the supply of nutrient-rich waters into the euphotic zone. The strong wind jet is orographically formed responding to shifts in wind direction over the eastern SCS. The wind shift is connected with the Philippine Sea anomalous anticyclone that is established during El Niño, indicating the El Niño-related offshore bloom. The long-term reanalysis winds over the eastern SCS demonstrates that wind jet formation and associated offshore cooling/bloom are expected to occur in most cases of the subsequent El Niño years.

Biomanipulation with quagga mussels (Dreissena rostriformis bugensis) to control harmful algal blooms in eutrophic urban ponds

NARCIS (Netherlands)

Waajen, Guido W. A. M.; Van Bruggen, Niek C. B.; Pires, L. Miguel Dionisio; Lengkeek, Wouter; Lurling, Miquel

Many urban ponds in The Netherlands and other countries suffer from eutrophication, resulting in harmful algal blooms which are often dominated by cyanobacteria. A sufficient reduction of nutrients, as prerequisite to mitigate cyanobacterial blooms in urban ponds, is not always feasible. Water

Biomanipulation with quagga mussels (Dreissena rostriformis bugensis) to control harmful algal blooms in eutrophic urban ponds

NARCIS (Netherlands)

Waajen, Guido W.A.M.; Bruggen, Van Niek C.B.; Pires, Miguel Dionisio L.; Lengkeek, Wouter; Lurling, Miguel

2016-01-01

Many urban ponds in The Netherlands and other countries suffer from eutrophication, resulting in harmful algal blooms which are often dominated by cyanobacteria. A sufficient reduction of nutrients, as prerequisite to mitigate cyanobacterial blooms in urban ponds, is not always feasible. Water

Nutrient control of cyanobacterial blooms in the Baltic Sea

NARCIS (Netherlands)

Stal, L.J.; Staal, M.J.; Villbrandt, M.

1999-01-01

Cyanobacterial blooms in the Baltic Sea were investigated with respect to growth Limitation and nitrogen fixation. The community was composed predominantly of Synechococcus spp., and large, heterocystous, nitrogen-fixing cyanobacteria (Aphanizomenon spp, and Nodularia spp.), that usually formed

Occurrence of Ceratium furcoides (Levander) Langhans 1925 bloom at the Billings Reservoir, São Paulo State, Brazil.

Science.gov (United States)

Matsumura-Tundisi, T; Tundisi, J G; Luzia, A P; Degani, R M

2010-10-01

An unusual bloom of Ceratium furcoides is reported for a station of the Taquacetuba compartment of the Billings Reservoir. The appearance of this bloom is attributed to the mixing and turbulence of the water column that removed Ceratium cysts from the surface of the sediment and promoted conditions for the growth of this species in the region of mixing. Cold fronts approaching the Billings Reservoir are probably the cause of the mixing and bloom. Also turbulence induced by wind increased phosphorus concentration in the water column. Ceratium furcoides was the dominant species at station 1 where the nutrient concentrations of nitrogen and phosphorus were high. Ceratium spp. blooms may be a problem for water treatment and massive mortality can affect the dissolved oxygen of the water producing fish kill.

Bacterial and protist community changes during a phytoplankton bloom

KAUST Repository

Pearman, John K.; Casas, Laura; Merle, Tony; Michell, Craig; Irigoien, Xabier

2015-01-01

)] as well as a control. This approach allowed us to discriminate the changes in species composition across a broad range of phylogenetic groups using a common taxonomic level. Diatoms dominated the bloom in the NPSc treatment while dinoflagellates were

Dynamics of Bacterial and Fungal Communities during the Outbreak and Decline of an Algal Bloom in a Drinking Water Reservoir.

Science.gov (United States)

Zhang, Haihan; Jia, Jingyu; Chen, Shengnan; Huang, Tinglin; Wang, Yue; Zhao, Zhenfang; Feng, Ji; Hao, Huiyan; Li, Sulin; Ma, Xinxin

2018-02-18

The microbial communities associated with algal blooms play a pivotal role in organic carbon, nitrogen and phosphorus cycling in freshwater ecosystems. However, there have been few studies focused on unveiling the dynamics of bacterial and fungal communities during the outbreak and decline of algal blooms in drinking water reservoirs. To address this issue, the compositions of bacterial and fungal communities were assessed in the Zhoucun drinking water reservoir using 16S rRNA and internal transcribed spacer (ITS) gene Illumina MiSeq sequencing techniques. The results showed the algal bloom was dominated by Synechococcus, Microcystis, and Prochlorothrix. The bloom was characterized by a steady decrease of total phosphorus (TP) from the outbreak to the decline period (p Limnobacter sp., Synechococcus sp., and Roseomonas sp. The relative size of the fungal community also changed with algal bloom and its composition mainly contained Ascomycota, Basidiomycota and Chytridiomycota. Heat map profiling indicated that algal bloom had a more consistent effect upon fungal communities at genus level. Redundancy analysis (RDA) also demonstrated that the structure of water bacterial communities was significantly correlated to conductivity and ammonia nitrogen. Meanwhile, water temperature, Fe and ammonia nitrogen drive the dynamics of water fungal communities. The results from this work suggested that water bacterial and fungal communities changed significantly during the outbreak and decline of algal bloom in Zhoucun drinking water reservoir. Our study highlights the potential role of microbial diversity as a driving force for the algal bloom and biogeochemical cycling of reservoir ecology.