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Sample records for east fork poplar

  1. BIOLOGICAL MONITORING PROGRAM FOR EAST FORK POPLAR CREEK

    Energy Technology Data Exchange (ETDEWEB)

    ADAMS, S.M.; BEATY, T.W.; BRANDT, C.C.; CHRISTENSEN, S.W.; CICERONE, D.S.

    1998-09-09

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  2. Soil Investigation of Lower East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Dickson, Johnbull O [ORNL; Mayes, Melanie [ORNL; Earles, Jennifer E [ORNL; Mehlhorn, Tonia L [ORNL; Lowe, Kenneth Alan [ORNL; Peterson, Mark J [ORNL; Pierce, Eric M [ORNL

    2017-03-01

    Mercury is regarded by the US Department of Energy (DOE) Oak Ridge Office of Environmental Management as a priority contaminant on the Oak Ridge Reservation because of the environmental risks associated with substantial losses from buildings, soils, and surface waters at the Y-12 National Security Complex (Y-12). As a result of historical releases of mercury from Y-12 primarily in the 1950s and early 1960s, the lower East Fork Poplar Creek (LEFPC) stream channel and bank soil margins are contaminated with mercury (Brooks and Southworth 2011; Tennessee Valley Authority 1985b, a). A Mercury Remediation Technology Development project is underway to evaluate the nature of downstream mercury contamination and to develop targeted site-specific remedial technologies that can mitigate mercury release and biological uptake. It is known that mercury concentration varies longitudinally and with depth in LEFPC bank soils; however, soil types and soil physical properties are not well known, especially relative to the zones of mercury contamination. Moreover, there are no soil maps for the downstream reaches of LEFPC in Roane County (i.e. from the Chestnut Hill Road downstream) and this work represents the first ever soil mapping along this section of LEFPC.

  3. BIOLOGICAL MONITORING PROGRAM FOR EAST FORK POPLAR CREEK

    Energy Technology Data Exchange (ETDEWEB)

    ADAMS, S.M.; ASHWOOD, T.L.; BEATY, T.W.; BRANDT, C.C.

    1997-10-24

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y- 12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  4. Evaluation of Lower East Fork Poplar Creek Mercury Sources

    Energy Technology Data Exchange (ETDEWEB)

    Watson, David B. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Brooks, Scott C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Mathews, Teresa J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Bevelhimer, Mark S. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); DeRolph, Chris [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Brandt, Craig C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Peterson, Mark J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Ketelle, Richard [East Tennessee Technology Park (ETTP), Oak Ridge, TN (United States)

    2016-06-01

    This report summarizes a 3-year research project undertaken to better understand the nature and magnitude of mercury (Hg) fluxes in East Fork Poplar Creek (EFPC). This project addresses the requirements of Action Plan 1 in the 2011 Oak Ridge Reservation-wide Comprehensive Environmental Response, Compensation, and Liability Act Five Year Review (FYR). The Action Plan is designed to address a twofold 2011 FYR issue: (1) new information suggests mobilization of mercury from the upper and lower EFPC streambeds and stream banks is the primary source of mercury export during high-flow conditions, and (2) the current Record of Decision did not address the entire hydrologic system and creek bank or creek bed sediments. To obtain a more robust watershed-scale understanding of mercury sources and processes in lower EFPC (LEFPC), new field and laboratory studies were coupled with existing data from multiple US Department of Energy programs to develop a dynamic watershed and bioaccumulation model. LEFPC field studies for the project focused primarily on quantification of streambank erosion and an evaluation of mercury dynamics in shallow groundwater adjacent to LEFPC and potential connection to the surface water. The approach to the stream bank study was innovative in using imagery from kayak floats’ surveys from the headwaters to the mouth of EFPC to estimate erosion, coupled with detailed bank soil mercury analyses. The goal of new field assessments and modeling was to generate a more holistic and quantitative understanding of the watershed and the sources, flux, concentration, transformation, and bioaccumulation of inorganic mercury (IHg) and methylmercury (MeHg). Model development used a hybrid approach that dynamically linked a spreadsheet-based physical and chemical watershed model to a systems dynamics, mercury bioaccumulation model for key fish species. The watershed model tracks total Hg and MeHg fluxes and concentrations by examining upstream inputs, floodplain

  5. Evaluation of Lower East Fork Poplar Creek Mercury Sources

    Energy Technology Data Exchange (ETDEWEB)

    Watson, David B. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Brooks, Scott C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Mathews, Teresa J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Bevelhimer, Mark S. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); DeRolph, Chris [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Brandt, Craig C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Peterson, Mark J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Ketelle, Richard [East Tennessee Technology Park (ETTP), Oak Ridge, TN (United States)

    2016-06-01

    This report summarizes a 3-year research project undertaken to better understand the nature and magnitude of mercury (Hg) fluxes in East Fork Poplar Creek (EFPC). This project addresses the requirements of Action Plan 1 in the 2011 Oak Ridge Reservation-wide Comprehensive Environmental Response, Compensation, and Liability Act Five Year Review (FYR). The Action Plan is designed to address a twofold 2011 FYR issue: (1) new information suggests mobilization of mercury from the upper and lower EFPC streambeds and stream banks is the primary source of mercury export during high-flow conditions, and (2) the current Record of Decision did not address the entire hydrologic system and creek bank or creek bed sediments. To obtain a more robust watershed-scale understanding of mercury sources and processes in lower EFPC (LEFPC), new field and laboratory studies were coupled with existing data from multiple US Department of Energy programs to develop a dynamic watershed and bioaccumulation model. LEFPC field studies for the project focused primarily on quantification of streambank erosion and an evaluation of mercury dynamics in shallow groundwater adjacent to LEFPC and potential connection to the surface water. The approach to the stream bank study was innovative in using imagery from kayak floats’ surveys from the headwaters to the mouth of EFPC to estimate erosion, coupled with detailed bank soil mercury analyses. The goal of new field assessments and modeling was to generate a more holistic and quantitative understanding of the watershed and the sources, flux, concentration, transformation, and bioaccumulation of inorganic mercury (IHg) and methylmercury (MeHg). Model development used a hybrid approach that dynamically linked a spreadsheet-based physical and chemical watershed model to a systems dynamics, mercury bioaccumulation model for key fish species. The watershed model tracks total Hg and MeHg fluxes and concentrations by examining upstream inputs, floodplain

  6. Best management practices plan for the Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    This plan was prepared in support of the Phase II Remedial Design Report (DOE/OR/01-1449&D1) and in accordance with requirements under CERCLA to present the plan for best management practices to be followed during the remediation. This document provides the Environmental Restoration Program with information about spill prevention and control, water quality monitoring, good housekeeping practices, sediment and erosion control measures, and inspections and environmental compliance practices to be used during Phase II of the remediation project for the Lower East Fork Poplar Creek Operable Unit.

  7. The Oak Ridge Y-12 Plant biological monitoring and abatement program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Loar, J.M.; Adams, S.M.; Allison, L.J.; Giddings, J.M.; McCarthy, J.F.; Southworth, G.R.; Smith, J.G.; Stewart, A.J. (Oak Ridge National Lab., TN (USA); Springborn Bionomics, Inc., Wareham, MA (USA); Oak Ridge National Lab., TN (USA))

    1989-10-01

    In May 1985, a National Pollutant Discharge Elimination System permit was issued for the Oak Ridge Y-12 Plant, a nuclear weapons components production facility located in Oak Ridge, Tennessee, and operated by Martin Marietta Energy Systems, Inc., for the US Department of Energy. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Oak Ridge Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek), in particular, the growth and propagation of fish and aquatic life, as designated by the Tennessee Department of Health and Environment. A second purpose for the BMAP is to document the ecological effects resulting from implementation of a water pollution control program that will include construction of nine new wastewater treatment facilities over the next 4 years. Because of the complex nature of the effluent discharged to East Fork Poplar Creek and the temporal and spatial variability in the composition of the effluent (i.e., temporal variability related to various pollution abatement measures that will be implemented over the next several years and spatial variability caused by pollutant inputs downstream of the Oak Ridge Y-12 Plant), a comprehensive, integrated approach to biological monitoring was developed for the BMAP. 39 refs., 5 figs., 8 tabs.

  8. Mercury Remediation Technology Development for Lower East Fork Poplar Creek - FY 2015 Progress Report

    Energy Technology Data Exchange (ETDEWEB)

    Peterson, Mark J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Brooks, Scott C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Mathews, Teresa J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Mayes, Melanie [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Johs, Alexander [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Watson, David B. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Poteat, Monica D. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Smith, John [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Mehlhorn, Tonia [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Lester, Brian [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Morris, Jesse [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Lowe, Kenneth [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division; Dickson, Johnbull O. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Eller, Virginia [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); DeRolph, Christopher R. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division

    2016-04-01

    Mercury remediation is a high priority for the US Department of Energy (DOE) Oak Ridge Office of Environmental Management (OREM) because of large historical losses of mercury within buildings and to soils and surface waters at the Y-12 National Security Complex (Y-12). Because of the extent of mercury losses and the complexities of mercury transport and fate in the downstream environment, the success of conventional options for mercury remediation in lower East Fork Poplar Creek (EFPC) is uncertain. A phased, adaptive management approach to remediation of surface water includes mercury treatment actions at Y-12 in the short-term and research and technology development (TD) to evaluate longer-term solutions in the downstream environment (US Department of Energy 2014b).

  9. Waste management plan for the Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    The Lower East Fork Poplar Creek (LEFPC) Remedial Action project will remove mercury-contaminated soils from the floodplain of LEFPC, dispose of these soils at the Y-12 Plant Landfill V, and restore the affected floodplain. The waste management plan addresses management and disposition of all wastes generated during the LEFPC remedial action. Most of the solid wastes will be sanitary or construction/demolition wastes and will be disposed of at existing Y- 12 facilities. Some small amounts of hazardous waste are anticipated, along with possible low-level or mixed wastes (> 35 pCi/g). Liquid wastes will be generated which will be sanitary and capable of being disposed of at the Oak Ridge Sewage Treatment Plant, except sanitary sewage.

  10. Confirmatory Sampling and Analysis Plan for the Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-12-01

    This document describes the organization, strategy, and procedures to be used to confirm that mercury concentrations in soils in the remediated areas are statistically less than, or equal to, the cleanup standard of 400 ppm. It focuses on confirming the cleanup of the stretch of the Lower East Fork Popular Creed flowing from Lake Reality at the Y-12 Plant, through the City of Oak Ridge, to Poplar Creek on the Oak Ridge Reservation and its associated flood plain.

  11. Remedial design work plan for Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-10-01

    The Remedial Design Work Plan (RDWP) for Lower East Fork Poplar Creek (EFPC) Operable Unit (OU) in Oak Ridge, Tennessee. This remedial action fits into the overall Oak Ridge Reservation (ORR) cleanup strategy by addressing contaminated floodplain soil. The objective of this remedial action is to minimize the risk to human health and the environment from contaminated soil in the Lower EFPC floodplain pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) and the Federal Facility Agreement (FFA) (1992). In accordance with the FFA, a remedial investigation (RI) (DOE 1994a) and a feasibility study (DOE 1994b) were conducted to assess contamination of the Lower EFPC and propose remediation alternatives. The remedial investigation determined that the principal contaminant is mercury, which originated from releases during Y-12 Plant operations, primarily between 1953 and 1963. The recommended alternative by the feasibility study was to excavate and dispose of floodplain soils contaminated with mercury above the remedial goal option. Following the remedial investigation/feasibility study, and also in accordance with the FFA, a proposed plan was prepared to more fully describe the proposed remedy.

  12. Quarterly Progress Report on the Biological Monitoring Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Adams, S.M.; Ashwood, T.L.; Cicerone, D.S.; Greeley, M.S. Jr.; Hill, W.R.; Kszos, L.A.

    1996-12-30

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program ( BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Lear et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities.

  13. Waste Management Plan for the Lower East Fork Poplar Creek Remedial Action Project Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The Lower East Fork Poplar Creek (LEFPC) Remedial Action project will remove mercury-contaminated soils from the floodplain of LEFPC, dispose of these soils at the Y-12 Landfill V, and restore the affected floodplain upon completion of remediation activities. This effort will be conducted in accordance with the Record of Decision (ROD) for LEFPC as a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) action. The Waste Management Plan addresses management and disposition of all wastes generated during the remedial action for the LEFPC Project Most of the solid wastes will be considered to be sanitary or construction/demolition wastes and will be disposed of at existing Y-12 facilities for those types of waste. Some small amounts of hazardous waste are anticipated, and the possibility of low- level or mixed waste exists (greater than 35 pCi/g), although these are not expected. Liquid wastes will be generated which will be sanitary in nature and which will be capable of being disposed 0214 of at the Oak Ridge Sewage Treatment Plant.

  14. Post construction report for Lower East Fork Poplar Creek Project, Phase 1, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-11-01

    This Phase 1 Remedial Action (RA) effort was conducted in accordance with the Record of Decision (ROD) for Lower East Fork Poplar Creek (LEFPC) as a Comprehensive Environmental Response, Compensation, and Liability Act action. The LEFPC, Phase 1 RA removed approximately 5,560 yd{sup 3} of mercury-contaminated soils, {ge} 400 ppm, from selected portions of the National Oceanographic and Atmospheric Administration (NOAA) site LEFPC floodplain from July 8, 1996--September 14, 1996. During excavation activities, pockets of elevated radiologically contaminated soils (greater than 35 pCi/g) were located by the continuous monitoring of the excavation areas and contaminated soils with radiological monitoring instruments. Through characterization sampling it has been determined that {approximately} 90 yd{sup 3} are less than 35 pCi/g uranium contaminated and will be transported to the Y-12 Landfill V for disposal and the remaining {approximately}40 yd{sup 3} do not meet the WAC for radiological constituents included in the Special Waste Permit for Landfill V. The radiologically contaminated soil will be placed in 21st Century containers for storage at the K-25 site.

  15. Quarterly Progress Report - Biological Monitoring Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Adams, S.M.; Christensen, S.W.; Greeley, M.S. jr; Hill, W.R.; McCarthy, J.F.; Peterson, M.J.; Ryon, M.G.; Smith, J.G.; Southworth, G.R.; Stewart, A.J.

    2000-07-18

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Loar et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities. Monitoring is currently being conducted at five primary EFPC sites, although sites may be excluded or added depending upon the specific objectives of the various tasks. Criteria used in selecting the sites include: (1) location of sampling sites used in other studies, (2) known or suspected sources of downstream impacts, (3) proximity to U.S. Department of Energy (DOE) Oak Ridge Reservation (ORR) boundaries, (4) concentration of mercury in the adjacent floodplain, (5) appropriate habitat distribution, and

  16. Quarterly Progress Report - Biological Monitoring Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Adams, S.M.; Christensen, S.W.; Greeley, M.S.jr; Hill, W.R.; McCarthy, J.F.; Peterson, M.J.; Ryon, M.G.; Smith, J.G.; Southworth, G.R.; Stewart, A.J.

    2000-10-18

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 Plant. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Plant protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Loar et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Plant on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Plant discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities. Monitoring is currently being conducted at five primary EFPC sites, although sites may be excluded or added depending upon the specific objectives of the various tasks. Criteria used in selecting the sites include: (1) location of sampling sites used in other studies, (2) known or suspected sources of downstream impacts, (3) proximity to U.S. Department of Energy (DOE) Oak Ridge Reservation (ORR) boundaries, (4) concentration of mercury in the adjacent floodplain, (5) appropriate habitat distribution, and

  17. Environmental compliance plan for the Lower East Fork Poplar Creek Remedial Action Project at Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-07-01

    Remedial action for Lower East Fork Poplar Creek, as defined by the Record of Decision, requires that soil contaminated with >400 ppM mercury be excavated and disposed. Based on the remediation goal, soil will be excavated from areas located at the NOAA site and the Bruner site and disposed at the Industrial Landfill V at the Y-12 Plant. Objective is to minimize the risk to human health and the environment from contaminated soil in the lower EFPC floodplain pursuant to CERCLA and the Federal Facility Agreement (DOE 1992).

  18. Baseline and Postremediation Monitoring Program Plan for the Lower East Fork Poplar Creek operable unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    This report was prepared in accordance with CERCLA requirements to present the plan for baseline and postremediation monitoring as part of the selected remedy. It provides the Environmental Restoration Program with information about the requirements to monitor for soil and terrestrial biota in the Lower East Fork Poplar Creek (LEFPC) floodplain; sediment, surface water, and aquatic biota in LEFPC; wetland restoration in the LEFPC floodplain; and human use of shallow groundwater wells in the LEFPC floodplain for drinking water. This document describes the monitoring program that will ensure that actions taken under Phases I and II of the LEFPC remedial action are protective of human health and the environment.

  19. Best management practices plan for the Lower East Fork Poplar Creek remedial action project, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The U.S. Department of Energy (DOE) has three major operating facilities on the DOE Oak Ridge Reservation (ORR) in Oak Ridge, Tennessee: the Oak Ridge Y-12 Plant, the K-25 Site, and the Oak Ridge National Laboratory (ORNL) managed by Lockheed Martin Environmental Research Corporation. All facilities are managed by Lockheed Martin Energy Systems, Incorporated (Energy Systems) for the DOE. The Y-12 Plant is adjacent to the city of Oak Ridge and is also upstream from Oak Ridge along East Fork Poplar Creek. The portion of the creek downstream from the Y-12 Plant is Lower East Fork Poplar Creek (LEFPC). This project will remove mercury-contaminated soils from the LEFPC floodplain, transport the soils to Industrial Landfill V (ILF-V), and restore any affected areas. This project contains areas that were designated in 1989 as a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) site. The site includes DOE property and portions of commercial, residential, agricultural, and miscellaneous areas within the city of Oak Ridge.

  20. Quarterly Progress Report - Biological Monitoring Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Adams, S. M.; Christensen, S. W.; Greeley, M.S. jr; McCracken, M.K.; Peterson, M.J.; Ryon, M.G.; Smith, J.G.; Southworth G. R.; Stewart, A. J.

    2001-01-19

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 National Security Complex (formerly the Oak Ridge Y-12 Plant). As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Complex protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Loar et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Complex on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Complex discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities. Monitoring is currently being conducted at five primary EFPC sites, although sites may be excluded or added depending upon the specific objectives of the various tasks. Criteria used in selecting the sites include: (1) location of sampling sites used in other studies, (2) known or suspected sources of downstream impacts, (3) proximity to U.S. Department of Energy (DOE) Oak Ridge Reservation (ORR) boundaries, (4) concentration of mercury in the

  1. Quarterly Progress Report - Biological Monitoring Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Adams, S. M.; Christensen, S. W.; Greeley, M.S. jr; McCracken, M.K.; Peterson, M.J.; Ryon, M.G.; Smith, J.G.; Southworth G. R.; Stewart, A. J.

    2001-01-19

    In May 1985, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge Y-12 National Security Complex (formerly the Oak Ridge Y-12 Plant). As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to demonstrate that the effluent limitations established for the Y-12 Complex protect the classified uses of the receiving stream (East Fork Poplar Creek; EFPC), in particular, the growth and propagation of aquatic life (Loar et al. 1989). A second objective of the BMAP is to document the ecological effects resulting from the implementation of a water pollution control program designed to eliminate direct discharges of wastewaters to EFPC and to minimize the inadvertent release of pollutants to the environment. Because of the complex nature of the discharges to EFPC and the temporal and spatial variability in the composition of the discharges, a comprehensive, integrated approach to biological monitoring was developed. A new permit was issued to the Y-12 Complex on April 28, 1995 and became effective on July 1, 1995. Biological monitoring continues to be required under the new permit. The BMAP consists of four major tasks that reflect different but complementary approaches to evaluating the effects of the Y-12 Complex discharges on the aquatic integrity of EFPC. These tasks are (1) toxicity monitoring, (2) biological indicator studies, (3) bioaccumulation studies, and (4) ecological surveys of the periphyton, benthic macroinvertebrate, and fish communities. Monitoring is currently being conducted at five primary EFPC sites, although sites may be excluded or added depending upon the specific objectives of the various tasks. Criteria used in selecting the sites include: (1) location of sampling sites used in other studies, (2) known or suspected sources of downstream impacts, (3) proximity to U.S. Department of Energy (DOE) Oak Ridge Reservation (ORR) boundaries, (4) concentration of mercury in the

  2. Final report from VFL Technologies for the pilot-scale thermal treatment of Lower East Fork Poplar Creek floodplain soils. LEFPC appendices. Volume 5. Appendix V-D

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-09-01

    This final report from VFL Technologies for the pilot-scale thermal treatment of lower East Fork Poplar Creek floodplain soils dated September 1994 contains LEFPC Appendices, Volume 5, Appendix V - D. This appendix includes the final verification run data package (PAH, TCLP herbicides, TCLP pesticides).

  3. Sampling and analysis plan for treatment water and creek water for the Lower East Fork Poplar Creek Operable Unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    This document provides the Environmental Restoration Program with information about the methodology, organizational structure, quality assurance and health and safety practices to be employed during the water sampling and analysis activities associated with the remediation of the Lower East Fork Poplar Creek Operable Unit during remediation of the National Oceanic and Atmospheric Administration and Bruner sites.

  4. An Assessment of health risk associated with mercury in soil and sediment from East Fork Poplar Creek, Oak Ridge, Tennessee. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Revis, N.; Holdsworth, G.; Bingham, G.; King, A.; Elmore, J.

    1989-04-01

    This report presents results from a study conducted to determine the toxicity of Mercury in soils sediments samples. Mice were fed via diet, soils and sediment, from various locations along the East Fork Poplar creek. Tissue distribution of pollutants was determined at various intervals. The tissue level relative to toxicity was used to determine the effect of a complex matrix on the gastrointestinal absorption and tissue distribution of the pollutants (other pollutants included cadmium and selenium).

  5. Second report on the Oak Ridge Y-12 Plant Biological Monitoring and Abatement Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Hinzman, R.L. [ed.; Adams, S.M. [Oak Ridge National Lab., TN (United States); Black, M.C. [Oklahoma State Univ., Stillwater, OK (United States)] [and others

    1993-06-01

    As stipulated in the National Pollutant Discharge Elimination System (NDPES) permit issued to the Oak Ridge Y-12 Plant on May 24, 1986, a Biological Monitoring and Abatement Program (BMAP) was developed for the receiving stream, East Fork Poplar Creek (EFPC). The objectives of BMAP are (1) to demonstrate that the current effluent limitations established for the Y-12 Plant protect the classified uses of EFPC (e.g., the growth and propagation of fish and aquatic life), as designated by the Tennessee Department of Environment and Conservation (TDEC) and (2) to document the ecological effects resulting from implementation of a Water Pollution Control Program that includes construction of several large wastewater treatment facilities. BMAP consists of four major tasks: (1) ambient toxicity testing; (2) bioaccumulation studies; (3) biological indicator studies; and (4) ecological surveys of stream communities, including periphyton (attached algae), benthic (bottom-dwelling) macroinvertebrates, and fish. This document, the second in a series of reports on the results of the Y-12 Plant BMAP, describes studies that were conducted between July 1986 and July 1988, although additional data collected outside this time period are included, as appropriate.

  6. First report on the Oak Ridge Y-12 Plant Biological Monitoring and Abatement Program for East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Loar, J.M.; Adams, S.M.; Allison, L.J.; Boston, H.L.; Huston, M.A.; McCarthy, J.F.; Smith, J.G.; Southworth, G.R.; Stewart, A.J. (Oak Ridge National Lab., TN (United States)); Black, M.C. (Oklahoma State Univ., Stillwater, OK (United States)); Gatz, A.J. Jr. (Ohio Wesleyan Univ., Delaware, OH (United States)); Hinzman, R.L. (Oak Ridge Research Inst., TN (United States)); Jimenez, B.D. (Puerto Rico Univ.,

    1992-07-01

    As stipulated in the National Pollutant Discharge Elimination System (NPDES) permit issued to the Oak Ridge Y-12 Plant on May 24, 1985, a Biological Monitoring and Abatement Program (BMAP) was developed for the receiving stream, East Fork Poplar Creek (EFPC). The objectives of the BMAP are (1) to demonstrate that the current effluent limitations established for the Oak Ridge Y-12 Plant protect the uses of EFPC (e.g., the growth and propagation of fish and aquatic life), as designated by the Tennessee Department of Environment and Conservation (TDEC) [formerly the Tennessee Department of Health and Environment (TDHE)], and (2) to document the ecological effects resulting from implementation of a water pollution control program that includes construction of several large wastewater treatment facilities. The BMAP consists of four major tasks: (1) ambient toxicity testing, (2) bioaccumulation studies, (3) biological indicator studies, and (4) ecological surveys of stream communities, including periphyton (attached algae), benthic macroinvertebrates, and fish. This document, the first in a series of reports on the results of the Y-12 Plant BMAP, describes studies that were conducted from May 1985 through September 1986.

  7. Final report for the pilot-scale thermal treatment of Lower East Fork Poplar Creek floodplain soils

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-09-01

    IT Corporation (IT) was contracted by Martin Marietta Energy Systems, Inc. (Energy Systems) to perform a pilot-scale demonstration of the effectiveness of thermal desorption as a remedial technology for removing mercury from the Lower East Fork Poplar Creek (LEFPC) floodplain soil. Previous laboratory studies by Energy Systems suggested that this technology could reduce mercury to very low levels. This pilot-scale demonstration study was initiated to verify on an engineering scale the performance of thermal desorption. This report includes the details of the demonstration study, including descriptions of experimental equipment and procedures, test conditions, sampling and analysis, quality assurance (QA), detailed test results, and an engineering assessment of a conceptual full-scale treatment facility. The specific project tasks addressed in this report were performed between October 1993 and June 1994. These tasks include soil receipt, preparation, and characterization; prepilot (bench-scale) desorption tests; front-end materials handling tests; pilot tests; back-end materials handling tests; residuals treatment; and engineering scale-up assessment.

  8. Second report on the Oak Ridge Y-12 Plant fish kill for Upper East Fork Poplar Creek

    Energy Technology Data Exchange (ETDEWEB)

    Etnier, E.L.; Opresko, D.M.; Talmage, S.S. [eds.

    1994-08-01

    This report summarizes the monitoring of fish kills in upper East Fork Poplar Creek (EFPC) from July 1990 to June 1993. Since the opening of Lake Reality (LR) in 1988, total numbers of fish inhabiting upper EFPC have increased. However, species diversity has remained poor. Water quality data have been collected in upper EFPC during the time period covered in this report. Total residual chlorine (TRC) levels have exceeded federal and state water quality criteria over the years. However, with the installation of two dechlorination systems in late 1992, TRC levels have been substantially lowered in most portions of upper EFPC. By June 1993, concentrations of TRC were 0.04 to 0.06 mg/L at the north-south pipes (NSP) and below detection limits at sampling station AS-8 and were 0 to 0.01 mg/L at the inlet and outlet of LR. The daily chronic fish mortality in upper EFPC has been attributed to background stress resulting from the continuous discharge of chlorine into upper EFPC. Mean daily mortality rates for 22 acute fish kills were three fold or more above background and usually exceeded ten fish per day. Total number of dead fish collected per acute kill event ranged from 30 to over 1,000 fish; predominant species killed were central stonerollers (Campostoma anomalum) and striped shiners (Luxilus chrysocephalus). Spills or elevated releases of toxic chemicals, such as acids, organophosphates, aluminum nitrate, ammonia, or chlorine, were identified as possible causative agents; however, a definitive cause-effect relationship was rarely established for any acute kills. Ambient toxicity testing, in situ chemical monitoring, and streamside experiments were used to examine TRC dynamics and ambient toxicity in EFPC.

  9. Calendar year 1996 annual groundwater monitoring report for the Upper East Fork Poplar Creek Hydrogeologic Regime at the U.S. Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-02-01

    This annual monitoring report contains groundwater and surface water monitoring data obtained in the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime) during calendar year (CY) 1996. The East Fork Regime encompasses several confirmed and suspected sources of groundwater contamination within industrialized areas of the US Department of Energy (DOE) Oak Ridge Y-12 Plant in Bear Creek Valley (BCV) southeast of Oak Ridge, Tennessee. Groundwater and surface water monitoring in the East Fork Regime are performed under the auspices of the Y-12 Plant Groundwater Protection Program (GWPP). Included are the groundwater monitoring data obtained in compliance with the Resource Conservation and Recovery Act (RCRA) post-closure permit for the East Fork Regime issued by the Tennessee Department of Environment and Conservation (TDEC) on August 30, 1996. The post-closure permit addresses post-closure monitoring requirements for two closed RCRA-regulated surface impoundments: the S-3 Ponds and New Hope Pond.

  10. Twenty-Five Years of Ecological Recovery of East Fork Poplar Creek: Review of Environmental Problems and Remedial Actions

    Energy Technology Data Exchange (ETDEWEB)

    Smith, John G [ORNL; Loar, James M [ORNL; Stewart, Arthur J [ORNL

    2011-01-01

    In May 1985, a National Pollutant Discharge Elimination System permit was issued for the Department of Energy s Y-12 National Security Complex (Y-12 Complex) in Oak Ridge, Tennessee, USA, allowing discharge of effluents to East Fork Poplar Creek (EFPC). The effluents ranged from large volumes of chlorinated oncethrough cooling water and cooling tower blow-down to smaller discharges of treated and untreated process wastewaters, which contained a mixture of heavy metals, organics, and nutrients, especially nitrates. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to meet two major objectives: demonstrate that the established effluent limitations were protecting the classified uses of EFPC, and document the ecological effects resulting from implementing a Water Pollution Control Program at the Y-12 Complex. The second objective is the primary focus of the other papers in this special series. This paper provides a history of pollution and the remedial actions that were implemented; describes the geographic setting of the study area; and characterizes the physicochemical attributes of the sampling sites, including changes in stream flow and temperature that occurred during implementation of the BMAP. Most of the actions taken under the Water Pollution Control Program were completed between 1986 and 1998, with as many as four years elapsing between some of the most significant actions. The Water Pollution Control Program included constructing nine new wastewater treatment facilities and implementation of several other pollution-reducing measures, such as a best management practices plan; area-source pollution control management; and various spill-prevention projects. Many of the major actions had readily discernable effects on the chemical and physical conditions of EFPC. As controls on effluents entering the stream were implemented, pollutant concentrations generally declined and, at least initially, the volume of water

  11. A retrospective study of the chemical analysis cost for the remediation of Lower East Fork Poplar Creek, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    Klatt, L.N.

    1998-06-01

    A retrospective study of the remediation of Lower East Fork Poplar Creek (LEFPC) in Oak Ridge, Tennessee was completed. The study was conducted by reviewing the public Comprehensive Environmental Response, Compensation, and Liability Act record documents associated with the remediation of LEFPC and through discussions with the project staff involved or familiar with the project. The remediation took place in two phases. The first phase involved the excavation of about 5,560 yd{sup 3} of soil at the National Oceanic and Atmospheric Administration (NOAA) locations in 1996. The second phase involved the excavation of 39,200 yd{sup 3} at another NOAA location and at the Bruner location in 1997. For the entire project (remedial investigation through cleanup), a total of 7,708 samples (1 sample for each 5.8 yd{sup 3} of soil remediated) were analyzed for mercury. The project obtained special regulatory approval to use two methods for the determination of mercury in soils that are not part of the Resource Conservation and Recovery Act SW-846 methods manual. The mercury analysis cost was $678,000, which represents 9.6% of the cleanup cost. During the cleanup phase of the project, an on-site laboratory was used. The estimated cost savings that the on-site laboratory provided fall into two categories: direct reduction of costs associated with chemical analysis and sample shipment totaling approximately $38,000, which represents a 5.3% savings relative to the estimated cost of using an off-site laboratory, and savings in the amount of $890,000 (12.5% of the $7.1 M cleanup cost), associated with expediting execution of the cleanup work by providing rapid (< 3 hours) sample result turnaround time. The manner in which the analytical services were procured for the LEFPC project suggest that the development of new chemical analysis technology must address deployment, performance, regulatory, robustness, reliability, and business appropriateness factors if the technology is to be

  12. Twenty-Five Years of Ecological Recovery of East Fork Poplar Creek: Review of Environmental Problems and Remedial Actions

    Science.gov (United States)

    Loar, James M.; Stewart, Arthur J.; Smith, John G.

    2011-06-01

    In May 1985, a National Pollutant Discharge Elimination System permit was issued for the Department of Energy's Y-12 National Security Complex (Y-12 Complex) in Oak Ridge, Tennessee, USA, allowing discharge of effluents to East Fork Poplar Creek (EFPC). The effluents ranged from large volumes of chlorinated once-through cooling water and cooling tower blow-down to smaller discharges of treated and untreated process wastewaters, which contained a mixture of heavy metals, organics, and nutrients, especially nitrates. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to meet two major objectives: demonstrate that the established effluent limitations were protecting the classified uses of EFPC, and document the ecological effects resulting from implementing a Water Pollution Control Program at the Y-12 Complex. The second objective is the primary focus of the other papers in this special series. This paper provides a history of pollution and the remedial actions that were implemented; describes the geographic setting of the study area; and characterizes the physicochemical attributes of the sampling sites, including changes in stream flow and temperature that occurred during implementation of the BMAP. Most of the actions taken under the Water Pollution Control Program were completed between 1986 and 1998, with as many as four years elapsing between some of the most significant actions. The Water Pollution Control Program included constructing nine new wastewater treatment facilities and implementation of several other pollution-reducing measures, such as a best management practices plan; area-source pollution control management; and various spill-prevention projects. Many of the major actions had readily discernable effects on the chemical and physical conditions of EFPC. As controls on effluents entering the stream were implemented, pollutant concentrations generally declined and, at least initially, the volume of water

  13. Remedial investigation work plan for the Upper East Fork Poplar Creek characterization area, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-09-01

    The Oak Ridge Y-12 Plant, located within the Oak Ridge Reservation (ORR), is owned by the US Department of Energy (DOE) and managed by Lockheed Martin Energy Systems, Inc. The entire ORR was placed on the National Priorities List (NPL) of CERCLA sites in November 1989. Following CERCLA guidelines, sites under investigation require a remedial investigation (RI) to define the nature and extent of contamination, evaluate the risks to public health and the environment, and determine the goals for a feasibility study (FS) of potential remedial actions. The need to complete RIs in a timely manner resulted in the establishment of the Upper East Fork Poplar Creek (UEFPC) Characterization Area (CA) and the Bear Creek CA. The CA approach considers the entire watershed and examines all appropriate media within it. The UEFPC CA, which includes the main Y-12 Plant area, is an operationally and hydrogeologically complex area that contains numerous contaminants and containment sources, as well as ongoing industrial and defense-related activities. The UEFPC CA also is the suspected point of origin for off-site groundwater and surface-water contamination. The UEFPC CA RI also will address a carbon-tetrachloride/chloroform-dominated groundwater plume that extends east of the DOE property line into Union Valley, which appears to be connected with springs in the valley. In addition, surface water in UEFPC to the Lower East Fork Poplar Creek CA boundary will be addressed. Through investigation of the entire watershed as one ``site,`` data gaps and contaminated areas will be identified and prioritized more efficiently than through separate investigations of many discrete units.

  14. Remedial investigation work plan for the Upper East Fork Poplar Creek characterization area, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-09-01

    The Oak Ridge Y-12 Plant, located within the Oak Ridge Reservation (ORR), is owned by the US Department of Energy (DOE) and managed by Lockheed Martin Energy Systems, Inc. The entire ORR was placed on the National Priorities List (NPL) of CERCLA sites in November 1989. Following CERCLA guidelines, sites under investigation require a remedial investigation (RI) to define the nature and extent of contamination, evaluate the risks to public health and the environment, and determine the goals for a feasibility study (FS) of potential remedial actions. The need to complete RIs in a timely manner resulted in the establishment of the Upper East Fork Poplar Creek (UEFPC) Characterization Area (CA) and the Bear Creek CA. The CA approach considers the entire watershed and examines all appropriate media within it. The UEFPC CA, which includes the main Y-12 Plant area, is an operationally and hydrogeologically complex area that contains numerous contaminants and containment sources, as well as ongoing industrial and defense-related activities. The UEFPC CA also is the suspected point of origin for off-site groundwater and surface-water contamination. The UEFPC CA RI also will address a carbon-tetrachloride/chloroform-dominated groundwater plume that extends east of the DOE property line into Union Valley, which appears to be connected with springs in the valley. In addition, surface water in UEFPC to the Lower East Fork Poplar Creek CA boundary will be addressed. Through investigation of the entire watershed as one ``site,`` data gaps and contaminated areas will be identified and prioritized more efficiently than through separate investigations of many discrete units.

  15. Sources of Mercury to East Fork Poplar Creek Downstream from the Y-12 National Security Complex: Inventories and Export Rates

    Energy Technology Data Exchange (ETDEWEB)

    Southworth, George R [ORNL; Greeley Jr, Mark Stephen [ORNL; Peterson, Mark J [ORNL; Lowe, Kenneth Alan [ORNL; Ketelle, Richard H [ORNL; Floyd, Stephanie B [ORNL

    2010-02-01

    East Fork Poplar Creek (EFPC) in Oak Ridge, Tennessee, has been heavily contaminated with mercury (also referred to as Hg) since the 1950s as a result of historical activities at the U.S. Department of Energy (DOE) Y-12 National Security Complex (formerly the Oak Ridge Y-12 Plant and hereinafter referred to as Y-12). During the period from 1950 to 1963, spills and leaks of elemental mercury (Hg{sup 0}) contaminated soil, building foundations, and subsurface drainage pathways at the site, while intentional discharges of mercury-laden wastewater added 100 metric tons of mercury directly to the creek (Turner and Southworth 1999). The inventory of mercury estimated to be lost to soil and rock within the facility was 194 metric tons, with another estimated 70 metric tons deposited in floodplain soils along the 25 km length of EFPC (Turner and Southworth 1999). Remedial actions within the facility reduced mercury concentrations in EFPC water at the Y-12 boundary from > 2500 ng/L to about 600 ng/L by 1999 (Southworth et al. 2000). Further actions have reduced average total mercury concentration at that site to {approx}300 ng/L (2009 RER). Additional source control measures planned for future implementation within the facility include sediment/soil removal, storm drain relining, and restriction of rainfall infiltration within mercury-contaminated areas. Recent plans to demolish contaminated buildings within the former mercury-use areas provide an opportunity to reconstruct the storm drain system to prevent the entry of mercury-contaminated water into the flow of EFPC. Such actions have the potential to reduce mercury inputs from the industrial complex by perhaps as much as another 80%. The transformation and bioaccumulation of mercury in the EFPC ecosystem has been a perplexing subject since intensive investigation of the issue began in the mid 1980s. Although EFPC was highly contaminated with mercury (waterborne mercury exceeded background levels by 1000-fold, mercury in

  16. Sources of Mercury to East Fork Poplar Creek Downstream from the Y-12 National Security Complex: Inventories and Export Rates

    Energy Technology Data Exchange (ETDEWEB)

    Southworth, George R [ORNL; Greeley Jr, Mark Stephen [ORNL; Peterson, Mark J [ORNL; Lowe, Kenneth Alan [ORNL; Ketelle, Richard H [ORNL; Floyd, Stephanie B [ORNL

    2010-02-01

    East Fork Poplar Creek (EFPC) in Oak Ridge, Tennessee, has been heavily contaminated with mercury (also referred to as Hg) since the 1950s as a result of historical activities at the U.S. Department of Energy (DOE) Y-12 National Security Complex (formerly the Oak Ridge Y-12 Plant and hereinafter referred to as Y-12). During the period from 1950 to 1963, spills and leaks of elemental mercury (Hg{sup 0}) contaminated soil, building foundations, and subsurface drainage pathways at the site, while intentional discharges of mercury-laden wastewater added 100 metric tons of mercury directly to the creek (Turner and Southworth 1999). The inventory of mercury estimated to be lost to soil and rock within the facility was 194 metric tons, with another estimated 70 metric tons deposited in floodplain soils along the 25 km length of EFPC (Turner and Southworth 1999). Remedial actions within the facility reduced mercury concentrations in EFPC water at the Y-12 boundary from > 2500 ng/L to about 600 ng/L by 1999 (Southworth et al. 2000). Further actions have reduced average total mercury concentration at that site to {approx}300 ng/L (2009 RER). Additional source control measures planned for future implementation within the facility include sediment/soil removal, storm drain relining, and restriction of rainfall infiltration within mercury-contaminated areas. Recent plans to demolish contaminated buildings within the former mercury-use areas provide an opportunity to reconstruct the storm drain system to prevent the entry of mercury-contaminated water into the flow of EFPC. Such actions have the potential to reduce mercury inputs from the industrial complex by perhaps as much as another 80%. The transformation and bioaccumulation of mercury in the EFPC ecosystem has been a perplexing subject since intensive investigation of the issue began in the mid 1980s. Although EFPC was highly contaminated with mercury (waterborne mercury exceeded background levels by 1000-fold, mercury in

  17. An archaeological reconnaissance of a 14 mile section of the East Fork Poplar Creek for the Environmental Restoration Project, Anderson and Roane Counties, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    DuVall, G.D. [DuVall and Associates, Inc., Nashville, TN (United States)

    1993-01-01

    At the request of the US Army Corps of Engineers, Nashville District, Nashville, Tennessee, an archaeological reconnaissance of the potential impact areas of the Environmental Restoration Project (ERP) along the East Fork Poplar Creek was conducted during the period December 16, 1991, and March 3, 1992. The reconnaissance was conducted in response to environmental evaluations as a result of the accidental spillage of approximately 293,000 pounds of mercury, radionuclides, heavy metals and other compounds. The reconnaissance to assess adverse impacts to cultural resources located within the boundaries of Federally-licensed, permitted, funded or assisted projects was conducted in compliance with the National Historic Preservation Act of 1966, National Environmental Policy Act of 1969 and Executive Order 11593.

  18. Evaluation of Calendar Year 1996 groundwater and surface water quality data for the Upper East Fork Poplar Creek Hydrogeologic Regime at the US Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-09-01

    This report presents an evaluation of the groundwater monitoring data obtained in the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime) during calendar year (CY) 1996. The East Fork Regime encompasses several confirmed and suspected sources of groundwater contamination within industrialized areas of the US Department of Energy (DOE) Y-12 Plant in Bear Creek Valley (BCV) southeast of Oak Ridge, Tennessee. The CY 1996 groundwater and surface water monitoring data are presented in Calendar Year 1996 Annual Groundwater Monitoring Report for the Upper East Fork Poplar Creek Hydrogeologic Regime at the US Department of Energy Y-12 Plant, Oak Ridge, Tennessee, along with the required data evaluations specified in the Resource Conservation and Recovery Act (RCRA) post-closure permit for the East Fork Regime. This report provides additional evaluation of the CY 1996 groundwater and surface water monitoring data with an emphasis on regime-wide groundwater contamination and long-term concentration trends for regulated and non-regulated monitoring parameters.

  19. Calendar Year 1997 Annual Groundwater Monitoring Report For The Upper East Fork Poplar Creek Hydrogeologic Regime At The U.S. Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    Jones, S.B.

    1998-02-01

    This report contains the groundwater monitoring data obtained during calendar year (CY) 1997 in compliance with the Resource Conservation Wd Recovery Act (RCRA) post-closure permit (PCP) for the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime) at the U.S. Department of Energy (DOE) Y-12 Plant in Oak Ridge, Tennessee. Issued by the Tennessee Department of Environment and Conservation (TDEC), the PCP defines the RCRA post-closure corrective action monitoring requirements for the portion of the groundwater contaminant plume that has migrated into the East Fork Regime ftom the S-3 Ponds, a closed RCW-regulated former surface impoundment located in Bear Creek Valley near the west end of the Y-12 Plant. In addition to the RCIL4 post-closure corrective action monitoring results, this report contains the groundwater and surface water monitoring data obtained during CY 1997 to fulfill requirements of DOE Order 5400.1.

  20. Hg Isotopes Reveal Importance of In-Stream Processing and Legacy Inputs in East Fork Poplar Creek, Oak Ridge, Tennessee, USA.

    Science.gov (United States)

    Demers, J. D.; Blum, J. D.; Brooks, S. C.; Donovan, P. M.; Gu, B.; Riscassi, A.

    2015-12-01

    Understanding how mercury (Hg) contaminated ecosystems will recover as atmospheric emissions and industrial point source discharges are controlled has become a driving motivation of mercury research. Key to predicting recovery of mercury contaminated ecosystems is an understanding of the mobilization of legacy Hg sources, and the subsequent bioavailability and biogeochemical cycling of mobilized Hg within aquatic ecosystems. Herein, we utilize natural abundance stable Hg isotope techniques to place new constraints on mercury sources, transport, and transformations along the flow path of East Fork Poplar Creek (EFPC), Oak Ridge, Tennessee. The isotopic composition of mercury in stream water and suspended sediment along the flow path suggest that: (1) physical processes such as dilution and sedimentation cannot fully explain decreases in total mercury concentrations along the flow path and that in-stream processes may be more important than previously realized; (2) in-stream processes include photochemical transformations (~20%), but microbial reduction is likely more dominant (~80%); and (3) additional sources of mercury inputs to EFPC at base-flow may predominantly arise from the hyporheic zone during the growing season, with adjacent riparian wetlands and non-point-source impacted tributaries increasing in importance during the dormant season when the stream channel is more hydrologically connected to the watershed.

  1. Evaluation of fish kills during November 1986 and July 1987 in upper East Fork Poplar Creek near the Y-12 Plant

    Energy Technology Data Exchange (ETDEWEB)

    Ryon, M.G.; Loar, J.M.; Southworth, G.R.; Stewart, A.J.; Adams, S.M.; Kszos, L.A.

    1990-09-01

    The Environmental Sciences Division (ESD) investigated two fish kills that occurred on November 21, 1986, and July 9, 1987, in upper East Fork Poplar Creek at the outfall of New Hope Pond (NHP) below the Oak Ridge Y-12 Plant. Investigative procedures included sampling of water at the inlet and outfall of NHP for water quality, examination of operating procedures at the Y-12 Plant and in the biomonitoring program that may have adversely affected the fish populations, review of results of concurrent ambient toxicity tests of the inlet and outfall water of NHP, autopsy investigations of the cause of death of the stonerollers, and laboratory experimentation to evaluate potential causes. The investigations revealed that the cause of death was bacterial hemorrhagic septicemia caused by Aeromonas hydrophila, which is a stress-mediated disease. The specific stressor responsible for the outbreak of the disease was not identified. Several possible stresses were indicated, including elevated concentrations of mercury and chlorine, excessive electroshocking activity, and elevated levels of the pathogen. Cumulative stress due to the combination of several factors was also suggested. Elevated temperatures and overcrowding may have enhanced the spread of the epizootic but were not the primary causes. The impact on the stoneroller population below NHP was not ecologically significant. 23 refs., 3 figs., 12 tabs.

  2. Groundwater quality assessment for the Upper East Fork Poplar Creek Hydrogeologic Regime at the Y-12 Plant. 1991 groundwater quality data and calculated rate of contaminant migration

    Energy Technology Data Exchange (ETDEWEB)

    1992-02-01

    This report contains groundwater quality data obtained during the 1991 calendar year at several waste management facilities and petroleum fuel underground storage tank (UST) sites associated with the Y-12 Plant. These sites are within the Upper East Fork Poplar Creek Hydrogeologic Regime (UEFPCHR), which is one of three regimes defined for the purposes of groundwater and surface-water quality monitoring and remediation. This report was prepared for informational purposes. Included are the analytical data for groundwater samples collected from selected monitoring wells during 1991 and the results for quality assurance/quality control (QA/QC) samples associated with each groundwater sample. This report also contains summaries of selected data, including ion-charge balances for each groundwater sample, a summary of analytical results for nitrate (a principle contaminant in the UEFPCHR), results of volatile organic compounds (VOCs) analyses validated using the associated QA/QC sample data, a summary of trace metal concentrations which exceeded drinking-water standards, and a summary of radiochemical analyses and associated counting errors.

  3. Evaluation of Calendar Year 1997 Groundwater and Surface Water Quality Data For The Upper East Fork Poplar Creek Hydrogeologic Regime At The U.S. Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    Jones, S.B.

    1998-09-01

    1 1.0 INTRODUCTION This report presents an evaluation of the groundwater quality monitoring data reported in: Calendar Year 1997 Annual Groundwatw Monitoring Report for the Upper East Fork Poplar Creek Hydrogeologtc Rep-meat the US. Department of Energy Y-12 Plant, Oak Ridge, Tennessee (AJA Technical Services, Inc. 1998), which is hereafter referenced as the Annual Monitoring Report. Section 2.0 presents background information for the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime) that is relevant to data evaluation, including brief descriptions of the geology, the groundwater flow system, the contaminant source areas, and the extent of groundwater contamination in the regime. Section 3.0 provides an overview of the groundwater sampling and analysis activities petiormed during calendar year (CY) 1997, including monitoring well locations, sampling frequency and methods, and laboratory analyses. Evaluation and interpretation of the monitoring da% described in Section 4.0, is generally focused on an overview of data quality assurance/quality control (QA/QC), long-term concentration trends for selected inorganic, organic, and radiological contaminants, and consistency with applicable site-specific conceptual contaminant transport models described in: Report on the Remedial Investigation of the Upper East Fork Poplar Creek Characterization Area at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee (U.S. Department of Energy 1998), which is referenced hereafter as the Remedial Investigation @I) Report. Findings of the data evaluations are summarized :in Section 5.0 and a list of technical reports and regulatory documents cited for more detailed irdormation (Section 6.0) concludes the report. All of the illustrations (maps and trend graphs) and data summary tables referenced in the text are presented in Appendm A and Appendix B, respectively. Appendix C provides a summary of the analytical results that meet applicable data quality objectives (DQOS) of

  4. Post-closure permit application for the Upper East Fork Poplar Creek hydrogeologic regime at the Y-12 Plant: New Hope Pond and Eastern S-3 ponds plume. Revision 2

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-02-01

    The intent of this Post-Closure, Permit Application (PCPA) is to satisfy the post-closure permitting requirements of the Tennessee Department of Environment and Conservation (TDEC) Rule 1200-1-11. This application is for the entire Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), which is within the Bear Creek Valley (BCV). This PCPA has been prepared to include the entire East Fork Regime because, although there are numerous contaminant sources within the regime, the contaminant plumes throughout the East Fork Regime have coalesced and can no longer be distinguished as separate plumes. This PCPA focuses on two recognized Resource Conservation and Recovery Act (RCRA) interim status units: New Hope Pond (NHP) and the eastern S-3 Ponds plume. This PCPA presents data from groundwater assessment monitoring throughout the regime, performed since 1986. Using this data, this PCPA demonstrates that NHP is not a statistically discernible source of groundwater contaminants and that sites upgradient of NHP are the likely sources of groundwater contamination seen in the NHP vicinity. As such, this PCPA proposes a detection monitoring program to replace the current assessment monitoring program for NHP.

  5. Site characterization summary report for dry weather surface water sampling upper East Fork Poplar Creek characterization area Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    This report describes activities associated with conducting dry weather surface water sampling of Upper East Fork Poplar Creek (UEFPC) at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee. This activity is a portion of the work to be performed at UEFPC Operable Unit (OU) 1 [now known as the UEFPC Characterization Area (CA)], as described in the RCRA Facility Investigation Plan for Group 4 at the Oak- Ridge Y-12 Plant, Oak Ridge, Tennessee and in the Response to Comments and Recommendations on RCRA Facility Investigation Plan for Group 4 at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee, Volume 1, Operable Unit 1. Because these documents contained sensitive information, they were labeled as unclassified controlled nuclear information and as such are not readily available for public review. To address this issue the U.S. Department of Energy (DOE) published an unclassified, nonsensitive version of the initial plan, text and appendixes, of this Resource Conservation and Recovery Act (RCRA) Facility Investigation (RFI) Plan in early 1994. These documents describe a program for collecting four rounds of wet weather and dry weather surface water samples and one round of sediment samples from UEFPC. They provide the strategy for the overall sample collection program including dry weather sampling, wet weather sampling, and sediment sampling. Figure 1.1 is a schematic flowchart of the overall sampling strategy and other associated activities. A Quality Assurance Project Plan (QAPJP) was prepared to specifically address four rounds of dry weather surface water sampling and one round of sediment sampling. For a variety of reasons, sediment sampling has not been conducted and has been deferred to the UEFPC CA Remedial Investigation (RI), as has wet weather sampling.

  6. Confirmatory Sampling and Analysis Plan for the Lower East Fork Poplar Creek operable unit, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-04-01

    On December 21, 1989, the EPA placed the US Department of Energy`s (DOE`s) Oak Ridge Reservation (ORR) on the National Priorities List (NPL). On January 1, 1992, a Federal Facilities Agreement (FFA) between the DOE Field Office in Oak Ridge (DOE-OR), EPA Region IV, and the Tennessee Department of Environment and Conservation (TDEC) went into effect. This FFA establishes the procedural framework and schedule by which DOE-OR will develop, coordinate, implement and monitor environmental restoration activities on the ORR in accordance with applicable federal and state environmental regulations. The DOE-OR Environmental Restoration Program for the ORR addresses the remediation of areas both within and outside the ORR boundaries. This sampling and analysis plan focuses on confirming the cleanup of the stretch of EFPC flowing from Lake Reality at the Y-12 Plant through the City of Oak Ridge, to Poplar Creek on the ORR and its associated floodplain. Both EFPC and its floodplain have been contaminated by releases from the Y-12 Plant since the mid-1950s. Because the EFPC site-designated as an ORR operable unit (OU) under the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) is included on the NPL, its remediation must follow the specific procedures mandated by CERCLA, as amended by the Superfund Amendments and Reauthorization Act in 1986.

  7. Groundwater Protection Program Calendar Year 1998 Evaluation of Groundwater Quality Data for the Upper East Fork Poplar Creek Hydrogeologic Regime at the U.S. Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    None

    1999-09-01

    This report presents an evaluation of the water quality monitoring data obtained by the Y-12 Plant Groundwater Protection Program (GWPP) in the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime) during calendar year (CY) 1998. The East Fork Regime contains many confirmed and potential sources of groundwater and surface water contamination associated with the U.S. Department of Energy (DOE) Oak Ridge Y-12 Plant. Applicable provisions of DOE Order 5400.1A - General Environmental Protection Program - require evaluation of groundwater and surface water quality near the Y-12 Plant to: (1) gauge groundwater quality in areas that are, or could be, affected by plant operations, (2) determine the quality of surface water and groundwater where contaminants are most likely to migrate beyond the DOE Oak Ridge Reservation (ORR) property line, and (3) identify and characterize long-term trends in groundwater quality at the Y-12 Plant. The following sections of this report contain relevant background information (Section 2.0); describe the results of the respective data evaluations required under DOE Order 5400.1A (Section 3.0); summarize significant findings of each evaluation (Section 4.0); and list the technical reports and regulatory documents cited for more detailed information (Section 5.0). All of the illustrations (maps and trend graphs) and data summary tables referenced in each section are presented in Appendix A and Appendix B, respectively.

  8. Twenty-Plus Years of Environmental Change and Ecological Recovery of East Fork Poplar Creek: Background and Trends in Water Quality

    Energy Technology Data Exchange (ETDEWEB)

    Smith, John G [ORNL; Stewart, Arthur J [ORNL; Loar, James M [ORNL

    2011-01-01

    In May 1985, a National Pollutant Discharge Elimination System permit was issued for the Department of Energy's Y-12 National Security Complex (Y-12 Complex) in Oak Ridge, Tennessee, USA, allowing discharge of effluents to East Fork Poplar Creek (EFPC). The effluents ranged from large volumes of chlorinated once-through cooling water and cooling tower blow-down to smaller discharges of treated and untreated process wastewaters, which contained a mixture of heavy metals, organics, and nutrients, especially nitrates. As a condition of the permit, a Biological Monitoring and Abatement Program (BMAP) was developed to meet two major objectives: demonstrate that the established effluent limitations were protecting the classified uses of EFPC, and document the ecological effects resulting from implementing a Water Pollution Control Program at the Y-12 Complex. The second objective is the primary focus of the other papers in this special series. This paper provides a history of pollution and the remedial actions that were implemented; describes the geographic setting of the study area; and characterizes the physicochemical attributes of the sampling sites, including changes in stream flow and temperature that occurred during implementation of the BMAP. Most of the actions taken under the Water Pollution Control Program were completed between 1986 and 1998, with as many as four years elapsing between some of the most significant actions. The Water Pollution Control Program included constructing nine new wastewater treatment facilities and implementation of several other pollution-reducing measures, such as a best management practices plan; area-source pollution control management; and various spill-prevention projects. Many of the major actions had readily discernable effects on the chemical and physical conditions of EFPC. As controls on effluents entering the stream were implemented, pollutant concentrations generally declined and, at least initially, the volume of

  9. Proposed modifications to the RCRA post-closure permit for the Upper East Fork Poplar Creek Hydrogeologic Regime at the U.S. Department of Energy Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-05-01

    This report presents proposed modifications to the Resource Conservation and Recovery Act (RCRA) Post-Closure Permit (PCP) for the Upper East Fork Poplar Creek Hydrogeologic Regime (permit number TNHW-088, EPA ID No. TN3 89 009 0001). The modifications are proposed to: (1) revise the current text for two of the Permit Conditions included in Permit Section II - General Facility Conditions, and (2) update the PCP with revised versions of the Y-12 Plant Groundwater Protection Program (GWPP) technical field procedures included in several of the Permit Attachments. The updated field procedures and editorial revisions are Class 1 permit modifications, as specified in Title 40, Code of Federal Regulations (CFR) {section}270.42; Appendix I - Classification of Permit Modifications. These modifications are summarized below.

  10. Work plan for support to Upper East Fork Poplar Creek east end VOC plumes well installation project at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-03-01

    Under the Resource Conservation and Recovery Act of 1976 guidelines and requirements from the Tennessee Department of Environment and Conservation (TDEC), the Y-12 Plant initiated investigation and monitoring of various sites within its boundaries in the mid-1980s. The entire Oak Ridge Reservation (ORR) was placed on the National Priorities List of the Comprehensive Environmental Response, Compensation, and Liability Act of 1980 (CERCLA) sites in November 1989. Following CERCLA guidelines, sites within the ORR require a remedial investigation (RI) to define the nature and extent of contamination, evaluate the risks to public health and the environment, and determine the goals for a feasibility study (FS) or an engineering evaluation/cost analysis (EE/CA) of potential remedial actions. Data from monitoring wells at the east end of the Y-12 Plant have identified an area of groundwater contamination dominated by the volatile organic compound (VOC) carbon tetrachloride; other VOCs include chloroform, tetrachloroethene, and trichloroethene.

  11. Remedial Investigation Work Plan for Upper East Fork Poplar Creek Operable Unit 3 at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee. Environmental Restoration Program

    Energy Technology Data Exchange (ETDEWEB)

    1993-08-01

    Upper East Fork Popular Creek Operable Unit 3 (UEFPC OU 3) is a source term OU composed of seven sites, and is located in the western portion of the Y-12 Plant. For the most part, the UEFPC OU 3 sites served unrelated purposes and are geographically removed from one another. The seven sites include the following: Building 81-10, the S-2 Site, Salvage Yard oil storage tanks, the Salvage Yard oil/solvent drum storage area, Tank Site 2063-U, the Salvage Yard drum deheader, and the Salvage Yard scrap metal storage area. All of these sites are contaminated with at least one or more hazardous and/or radioactive chemicals. All sites have had some previous investigation under the Y-12 Plant RCRA Program. The work plan contains summaries of geographical, historical, operational, geological, and hydrological information specific to each OU 3 site. The potential for release of contaminants to receptors through various media is addressed, and a sampling and analysis plan is presented to obtain objectives for the remedial investigation. Proposed sampling activities are contingent upon the screening level risk assessment, which includes shallow soil sampling, soil borings, monitoring well installation, groundwater sampling, and surface water sampling. Data from the site characterization activities will be used to meet the above objectives. A Field Sampling Investigation Plan, Health and Safety Plan, and Waste Management Plan are also included in this work plan.

  12. Grand Forks - East Grand Forks Urban Water Resources Study. Wastewater Management Appendix.

    Science.gov (United States)

    1981-07-01

    denitrification or clinoptilolite ion exchange is required to meet the ammonia and total nitrogen levels. The effluent from these unit processes would be filtered...32 45 Dissolved Oxygen (mg/1) At Grand Forks 6.0 7.0 8.6 i0.0 12.1 At East Grand Forks 6.5 7.4 9.0 11.4 12.7 Ammonia Nitrogen (mg/i) At Grand Forks...Concentration (mg/i) Total Solids 700 Dissolved Solids 500 Suspended Solids 200 BOD5 200 COD 500 Total Nitrogen 40 Organic Nitrogen 15 Ammonia Nitrogen

  13. Needs assessment for the Greenway Grand Forks-East Grand Forks development and public education

    Science.gov (United States)

    Munski, Laura

    Following the flood of 1997, the U.S. Army Corps of Engineers included the Greenway Grand Forks---East Grand Forks (the Greenway) as a flood control measure for Grand Forks, North Dakota and East Grand Forks, Minnesota. It extends along both the Red River of the North and the Red Lake River, encompassing 2200 acres of land. The cities of Grand Forks and East Grand Forks hired consultants to assist with the postflood planning process. The planning process culminated with the Red River of the North Greenway Final Report (Flink, 1998). The purpose of this study was to determine if the development of the Greenway addressed the objectives of the planning report. The history of the land adjacent to the rivers was reviewed to document the progression of riverfront development. Anecdotal evidence was collected, field observations were made, city council minutes were reviewed, Greenway Technical Committee members were interviewed, Greenway Technical Committee minutes were reviewed, and the Greenway Grand Forks---East Grand Forks survey results were reviewed to determine if the objectives of the Red River of the North Greenway Final Report were addressed. A cross section survey was designed by Laura Munski for this dissertation research. The survey was approved by the Greenway Technical Committee. The survey collected both quantitative and qualitative data from the community. The purpose of the survey portion of the research project was to ascertain how residents were kept informed of activities on the Greenway and what amenities residents were using on the Greenway and to solicit their comments regarding the Greenway. The results of the survey research were used in both marketing and event planning for the Greenway. The singular qualitative survey question gave respondents an opportunity to share their comments regarding the Greenway. The qualitative data analysis provided insight to the amenities and educational programs desired by respondents, their concerns regarding the

  14. Wavelike movement of bedload sediment, East Fork River, Wyoming

    Science.gov (United States)

    Meade, R.H.

    1985-01-01

    Bedload is moved down the East Fork River in distinct wavelike pulses that have the form of composite dune fields The moving material consists mostly of coarse sand and fine gravel The wavelengths of the pulses are about 500-600 m, a distance that is predetermined by the pattern of stoage of bed sediment in the river during low water As the river discharge increases, the bed sediment is scoured from the storage areas, and it is moved onto and across the interventing riffles As the river discharge decreases, the bed sediment is scoured off the riffles and moved into the next storage area downstream Each successive pulse of water discharge sets into motion a wave of bedload that continues to move unitil it reaches the next storage area ?? 1985 Springer-Verlag New York Inc.

  15. Grand Forks - East Grand Forks Urban Water Resources Study. Social and Environmental Inventory.

    Science.gov (United States)

    1979-01-01

    character- ized by wide variations in temperature, light to moderate precipitation, plentiful sunshine and nearly continuous air movement. Weather patterns...Forks Bicentennial Committee for its photo of the University of North Dakota’s Eternal Flame Memorial. 2. To Mr. Dan Metz for the use of his wildlife

  16. Flood-inundation maps for the East Fork White River near Bedford, Indiana

    Science.gov (United States)

    Fowler, Kathleen K.

    2014-01-01

    Digital flood-inundation maps for an 1.8-mile reach of the East Fork White River near Bedford, Indiana (Ind.) were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ depict estimates of the areal extent and depth of flooding corresponding to selectedwater levels (stages) at USGS streamgage 03371500, East Fork White River near Bedford, Ind. Current conditions for estimating near-real-time areas of inundation using USGS streamgage information may be obtained on the Internet at http://waterdata.usgs.gov/in/nwis/uv?site_no=03371500. In addition, information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood warning system (http://water.weather.gov/ahps/). The NWS forecasts flood hydrographs at many places that are often colocated with USGS streamgages, including the East Fork White River near Bedford, Ind. NWS-forecasted peak-stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. For this study, flood profiles were computed for the East Fork White River reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relations at USGS streamgage 03371500, East Fork White River near Bedford, Ind., and documented high-water marks from the flood of June 2008. The calibrated hydraulic model was then used to determine 20 water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The simulated water-surface profiles were then combined with a geographic information system (GIS) digital elevation model (DEM, derived from

  17. Flood-inundation maps for the East Fork White River at Shoals, Indiana

    Science.gov (United States)

    Boldt, Justin A.

    2016-05-06

    Digital flood-inundation maps for a 5.9-mile reach of the East Fork White River at Shoals, Indiana (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage on the East Fork White River at Shoals, Ind. (USGS station number 03373500). Near-real-time stages at this streamgage may be obtained on the Internet from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service (NWS) Advanced Hydrologic Prediction Service (AHPS) at http://water.weather.gov/ahps/, which also forecasts flood hydrographs at this site (NWS AHPS site SHLI3). NWS AHPS forecast peak stage information may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation.Flood profiles were computed for the East Fork White River reach by means of a one-dimensional, step-backwater model developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated by using the current stage-discharge relation (USGS rating no. 43.0) at USGS streamgage 03373500, East Fork White River at Shoals, Ind. The calibrated hydraulic model was then used to compute 26 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from approximately bankfull (10 ft) to the highest stage of the current stage-discharge rating curve (35 ft). The simulated water-surface profiles were then combined with a geographic information system (GIS) digital elevation model (DEM), derived from light detection and ranging (lidar) data, to delineate the area flooded at each water level. The areal extent of the 24-ft flood-inundation map was

  18. Effects of controlled burning of chaparral on streamflow and sediment characteristics, East Fork Sycamore Creek, central Arizona

    Science.gov (United States)

    Baldys, Stanley; Hjalmarson, H.W.

    1994-01-01

    The effects of controlled burning of part of a chaparral-covered drainage basin on streamflow and sediment characteristics were studied in the upper reaches of the Sycamore Creek basin in central Arizona. A paired-watershed method was used to analyze data collected in two phases separated by the controlled burning of 45 percent of the East Fork Sycamore Creek drainage basin by the U.S. Forest Service on October 31, 1981. Statistically significant increases in streamflow in East Fork occurred from October 26, 1982, through August 25, 1984. Streamflow for August 26, 1984, through the end of data collection for the study on May 31, 1986, was generally at or less than preburn levels. An increase in the percentage of time that flow occurred in East Fork was noted for water years 1983 and 1984. No increase in the magnitude of instantaneous peak flows as a result of the burn was discernable at statistically significant levels. Suspended-sediment yields computed for data collected during water year 1983 were significantly greater in the East Fork drainage basin, 546 tons per square mile, than in the West Fork drainage basin, 22.6 tons per square mile. Suspended-sediment yields computed for East Fork and West Fork for water year 1985, 38.3 and 13.3 tons per square mile, respectively, were much closer in yield. These more uniform yields indicate a possible return to preburn conditions. Data collection did not begin until 11 months after the burn; therefore, the largest increases in streamflow and sediment yields, which commonly occur during the year after a burn, may not have been measured. During the second through fourth years after the burn, smaller increases in stream- flow and sediment yields were found in this study than were found in similar studies in this region.

  19. Mercury Content of Sediments in East Fork Poplar Creek: Current Assessment and Past Trends

    Energy Technology Data Exchange (ETDEWEB)

    Brooks, Scott C [ORNL; Eller, Virginia A [ORNL; Dickson, Johnbull O [ORNL; Earles, Jennifer E [ORNL; Lowe, Kenneth Alan [ORNL; Mehlhorn, Tonia L [ORNL; Olsen, Todd A [ORNL; DeRolph, Christopher R [ORNL; Watson, David J [ORNL; Phillips, Debra H [Queen’s University Belfast, UK; Peterson, Mark J [ORNL

    2017-01-01

    This study provided new information on sediment Hg and MMHg content and chemistry. The results support the relevance and potential impacts of other active and planned investigations within the TD project (e.g., assessment and control of bank soil inputs, sorbents for Hg and MMHg removal, re-introduction of freshwater clams to EFPC) and identify gaps in current understanding that represent opportunities to understand controlling variables that may inform future technology development studies.

  20. Demonstration of Advanced Geophysics and Classification Methods on Munitions Response Sites - East Fork Valley Range Complex, Former Camp Hale

    Science.gov (United States)

    2016-04-01

    ESTCP to test the effectiveness of advanced geophysical sensors and physics -based data analysis tools for anomaly classification . The project purpose is...the project data. 50 10.0 REFERENCES ESTCP. 2009. “Geophysical System Verification (GSV): A Physics -Based Alternative to Geophysical Prove-Outs for...Technical Report Demonstration of Advanced Geophysics and Classification Methods on Munitions Response Sites - East Fork Valley

  1. Bedload and river hydraulics - Inferences from the East Fork River, Wyoming

    Science.gov (United States)

    Leopold, Luna Bergere; Emmett, William W.

    1997-01-01

    During 1973-79, bedload data were collected in a sophisticated trap on a river of moderate size, the East Fork. The transport rate was measured most days through a full snowmelt season, and the rate was determined separately for eight zones across the channel width. The quantitative data are unique and unlikely to be repeated. Nor need they be, because as a result of this effort a practical bedload sampler was adequately tested against full river measurement.It was shown that bedload moves sporadically and randomly on the river bed. Therefore, transport rate is highly variable in short periods of time. There is also a wide variance from day to day. Yet, different rivers have transport rates, which are functions of discharge, depth, and sediment size, that are clearly distinct. Comparison of computed and measured transport rates indicates that a major problem remains: What grain size is representative of the bedload when there is a wide or heterogeneous particle-size distribution? Size of the bedload in motion may be very different from the size of bed material obtained from samples of the streambed.For general computation, the river channel slope may be averaged, and it may be assumed that water-surface slope does not change materially with changing discharge. Indeed, this generality is correct, in that, compared with depth, velocity, and width, slope is conservative at-a-station. However, in more detail, slope changes importantly with discharge in short reaches of channel, and those changes are very different in pool and riffle.These local changes in slope are not merely an aspect of a detailed longitudinal profile but involve cross-channel as well as down-channel components. The pool and riffle sequence involves not only undulation of bed elevation and bar formation on alternate sides of the channel, but alternation of the zone of superovulation of the water surface, and changing relation of watersurface slope to discharge. These details can be seen only in the

  2. The Late Cretaceous Middle Fork caldera, its resurgent intrusion, and enduring landscape stability in east-central Alaska

    Science.gov (United States)

    Bacon, Charles R.; Dusel-Bacon, Cynthia; Aleinikoff, John N.; Slack, John F.

    2014-01-01

    Dissected caldera structures expose thick intracaldera tuff and, uncommonly, cogenetic shallow plutons, while remnants of correlative outflow tuffs deposited on the pre-eruption ground surface record elements of ancient landscapes. The Middle Fork caldera encompasses a 10 km × 20 km area of rhyolite welded tuff and granite porphyry in east-central Alaska, ∼100 km west of the Yukon border. Intracaldera tuff is at least 850 m thick. The K-feldspar megacrystic granite porphyry is exposed over much of a 7 km × 12 km area having 650 m of relief within the western part of the caldera fill. Sensitive high-resolution ion microprobe with reverse geometry (SHRIMP-RG) analyses of zircon from intracaldera tuff, granite porphyry, and outflow tuff yield U-Pb ages of 70.0 ± 1.2, 69.7 ± 1.2, and 71.1 ± 0.5 Ma (95% confidence), respectively. An aeromagnetic survey indicates that the tuff is reversely magnetized, and, therefore, that the caldera-forming eruption occurred in the C31r geomagnetic polarity chron. The tuff and porphyry have arc geochemical signatures and a limited range in SiO2 of 69 to 72 wt%. Although their phenocrysts differ in size and abundance, similar quartz + K-feldspar + plagioclase + biotite mineralogy, whole-rock geochemistry, and analytically indistinguishable ages indicate that the tuff and porphyry were comagmatic. Resorption of phenocrysts in tuff and porphyry suggests that these magmas formed by thermal rejuvenation of near-solidus or solidified crystal mush. A rare magmatic enclave (54% SiO2, arc geochemical signature) in the porphyry may be similar to parental magma and provides evidence of mafic magma and thermal input.

  3. Delineation of brine contamination in and near the East Poplar oil field, Fort Peck Indian Reservation, northeastern Montana, 2004-09

    Science.gov (United States)

    Thamke, Joanna N.; Smith, Bruce D.

    2014-01-01

    The extent of brine contamination in the shallow aquifers in and near the East Poplar oil field is as much as 17.9 square miles and appears to be present throughout the entire saturated zone in contaminated areas. The brine contamination affects 15–37 billion gallons of groundwater. Brine contamination in the shallow aquifers east of the Poplar River generally moves to the southwest toward the river and then southward in the Poplar River valley. The likely source of brine contamination in the shallow aquifers is brine that is produced with crude oil in the East Poplar oil field study area. Brine contamination has not only affected the water quality from privately owned wells in and near the East Poplar oil field, but also the city of Poplar’s public water-supply wells. Three water-quality types characterize water in the shallow aquifers; a fourth water-quality type in the study area characterizes the brine. Type 1 is uncontaminated water that is suitable for most domestic purposes and typically contains sodium bicarbonate and sodium/magnesium sulfate as the dominant ions. Type 2 is moderately contaminated water that is suitable for some domestic purposes, but not used for drinking water, and typically contains sodium and chloride as the dominant ions. Type 3 is considerably contaminated water that is unsuitable for any domestic purpose and always contains sodium and chloride as the dominant ions. Type 3 quality of water in the shallow aquifers is similar to Type 4, which is the brine that is produced with crude oil. Electromagnetic apparent conductivity data were collected in the 106 square-mile area and used to determine extent of brine contamination. These data were collected and interpreted in conjunction with water-quality data collected through 2009 to delineate brine plumes in the shallow aquifers. Monitoring wells subsequently were drilled in some areas without existing water wells to confirm most of the delineated brine plumes; however, several possible

  4. Report of Flood, Oil Sheen, and fish Kill Incidents on East Fork Poplar Creek at the Oak Ridge Y-12 Plant

    Energy Technology Data Exchange (ETDEWEB)

    Skaggs, B.E.

    1997-09-01

    Water quality and plant opemtion irriiormation provided by the Y-12 Plant strongly suggest that a dechlorinating agent, applied to the raw water released below the North-South Pipes was responsible for the toxicity resulting in the fish kill of July 24. Dissolved oxygen (DO) measurements in upper EFPC indicai e that low oxygen levels (3-5 ppm) occurred for a period of up to 30 min. This slug of low DO water traveling down EFPC to the lake could easily explain the massive fish kill and the resulting observations. Dissolved oxygen levels of 5.2 ppm or lower are documented as causing problems for warmwater fish species (Heath 1995). The presence of other stressors, including a range of petrochemicals, tends to lower resistance to low oxygen conditions. Given the sequence of events in upper EFPC in the few days prior to July 24, where extremely high flows were followed by inputs of a wide range of low concentrations of oils, the sensitivity to low DO conditions might be heightened. The possible toxic impact of ::he oils and other contaminants reaching EFPC as a result of the heavy rainfidl on July 22 doesn't appear significant enough to be the sole cause of the kill on July 24. Even during the height of the kill, a large school of fish remained immediately downstream of the North-South Pipes. If the toxicity of waters flowing through this outlet were the primary cause of the kill, then it would be expected that this school of fish would not have been present immediately below the pipes. Any impact of waters entering from other sources, such as pumping of basements WOUIC1 have produced a staggered pattern of mortality, with fishing dying in different localities at different times and rates. Further, it would be expected that the morta.lhy observed would have continued over several days at least, as more resistant individuals succumbed slowly to the toxic exposure. This would have provided freshly dead or dying fish for the surveys of July 25 and 28. In previous fish kills in this stream section, the impact on the fish community has been judged to be short-term only, with no significant long-term ecological effects. In fact, the numerous fish kills over the past 7 years do not appear to have dampened the growth of the stream fish populations. The magnit~de of these kills was far less than that of the July 24 kill; maximum mortality of 10-20o/0 of th{~ total population above Lake Reality. Because the current kill has tiected a much larger proportion of the resident population, the impacts are expected to extend for a longer period in this situation, perhaps up to a year. Decreased population levels should be evident through the fhll 1997 and spring 1998 samples. Depending on the success rate of reproduction during the summer cf 1998, the recovery of fish populations should be observed in the fdl 1998 population sample. However, complete recovery may take several reproductive seasons to reach the densities seen in 1997. The cyprinid species occurring in upper EFPC have tremendous reproductive capacities and should be able to repopulate this area with little or no long-term ecological impact. Even the redbreast sunfish should, at the worst, only endure a narrowing of its available gene pool, with little if any long-term impacts.

  5. Remedial investigation work plan for the Upper East Fork Poplar Creek Characterization Area, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-03-01

    More than 200 contaminated sites created by past waste management practices have been identified at the Y-12 Plant. Many of the sites have been grouped into operable units based on priority and on investigative and remediation requirements. The Y-12 Plant is one of three major facilities on the ORR. The ORR contains both hazardous and mixed-waste sites that are subject to regulations promulgated under the Resource Conservation and Recovery Act of 1976 (RCRA) and the Comprehensive Environmental Response, Compensation, and Liability Act of 1980 (CERCLA), as amended by the Superfund Amendments and Reauthorization Act of 1986. Under RCRA guidelines and requirements from the Tennessee Department of Environment and Conservation (TDEC), the Y-12 Plant initiated investigation and monitoring of various sites within its boundaries in the mid-1980s. The entire ORR was placed on the National Priorities List (NPL) of CERCLA sites in November 1989. Following CERCLA guidelines, sites under investigation require a remedial investigation (RI) to define the nature and extent of contamination, evaluate the risks to public health and the environment, and determine the goals for a feasibility study (FS) of potential remedial actions.

  6. Hyporheic Exchange Flows and Biogeochemical Patterns near a Meandering Stream: East Fork of the Jemez River, Valles Caldera National Preserve, New Mexico

    Science.gov (United States)

    Christensen, H.; Wooten, J. P.; Swanson, E.; Senison, J. J.; Myers, K. D.; Befus, K. M.; Warden, J.; Zamora, P. B.; Gomez, J. D.; Wilson, J. L.; Groffman, A.; Rearick, M. S.; Cardenas, M. B.

    2012-12-01

    A study by the 2012 Hydrogeology Field Methods class of the University of Texas at Austin implemented multiple approaches to evaluate and characterize local hyporheic zone flow and biogeochemical trends in a highly meandering reach of the of the East Fork of the Jemez River, a fourth order stream in northwestern New Mexico. This section of the Jemez River is strongly meandering and exhibits distinct riffle-pool morphology. The high stream sinuosity creates inter-meander hyporheic flow that is also largely influenced by local groundwater gradients. In this study, dozens of piezometers were used to map the water table and flow vectors were then calculated. Surface water and ground water samples were collected and preserved for later geochemical analysis by ICPMS and HPLC, and unstable parameters and alkalinity were measured on-site. Additionally, information was collected from thermal monitoring of the streambed, stream gauging, and from a series of electrical resistivity surveys forming a network across the site. Hyporheic flow paths are suggested by alternating gaining and losing sections of the stream as determined by stream gauging at multiple locations along the reach. Water table maps and calculated fluxes across the sediment-water interface also indicate hyporheic flow paths. We find variability in the distribution of biogeochemical constituents (oxidation-reduction potential, nitrate, ammonium, and phosphate) along interpreted flow paths which is partly consistent with hyporheic exchange. The variability and heterogeneity of reducing and oxidizing conditions is interpreted to be a result of groundwater-surface water interaction. Two-dimensional mapping of biogeochemical parameters show redox transitions along interpreted flow paths. Further analysis of various measured unstable chemical parameters results in observable trends strongly delineated along these preferential flow paths that are consistent with the direction of groundwater flow and the assumed

  7. Water-power resources in upper Carson River basin, California-Nevada, A discussion of potential development of power and reservoir sites on east and west forks, Carson River

    Science.gov (United States)

    Pumphrey, Harold L.

    1955-01-01

    West Fork Carson River offers the best opportunity for power development in the Carson River basin. The Hope Valley reservoir site could be developed to provide adequate storage regulation and concentration of fall would permit utilization of 1,400 feet of head in 51h miles below the clam site, or 1,900 feet of head in about 972 miles below the dam site; however, the average annual runoff susceptible of development is only about 70,000 acre-feet which limits the power that could be developed continuously in an average year with regulation to about 8,700 kilowatts utilizing 1,400 feet of head, or 12,000 kilowatts utilizing 1,900 feet of head. The method and degree of development will be determined to large extent by the method devised to supplement regulated flows from the Hope Valley reservoir to supply the water already appropriated for irrigation. If the Hope Valley site and the Watasheamu site on East Fork Carson River were developed coordinately water could be transferred to the West Fork for distribution through canals leading from that stream thus satisfying the deficiency due to regulation at Hope Valley and release of stored water on a power schedule. This would permit utilization of the entire 1,900 feet of fall. Independent development of the West Fork for optimum power production would require re-regulation of releases from Hope Valley reservoir and storage of a considerable part of the fall and winter flow for use during the irrigation season. Adequate storage capacity is apparently not available on the West Fork below Hope Valley; but offstream storage may be available in Diamond Valley which could be utilized by diversion from the West Fork near Woodfords. This would limit the utilization of the stream for power purposes to the development of the 1,400 feet of head between the Hope Valley dam site and Wood fords. In a year of average discharge East Fork Carson River and three of its principal tributaries could be developed to produce about 13

  8. Contribution of Nutrient-enriched Groundwater to Excessive Algal Growth along a Select Reach of the East Fork Carson River, West-Central Nevada

    Science.gov (United States)

    Alvarez, N. L.; Pahl, R. A.; Rosen, M. R.

    2016-12-01

    A study during the summers of 2010 and 2012 was conducted to determine if nutrient-enriched groundwater discharge contributed to excessive algal growth observed along a 5,800-foot reach of the East Fork Carson River in Carson Valley, west-central Nevada. Groundwater discharge to the river was determined using flow-net analysis, chloride-mass balance, and differences in measured streamflow. Water samples were collected from the river and shallow groundwater wells located in the river and along the banks for determination of nutrient concentrations and sources; algae samples were collected from the 5,800-foot river reach. Groundwater was found to be discharging to the river from both banks along a 405-foot sub-reach in the middle of the 5,800-foot study reach. High nitrate concentrations (2-3 milligrams per liter as nitrogen) were found in the groundwater along the right bank of the sub-reach. Within this sub-reach, river nitrate loads ranged from 1.3 to 7.9 pounds of nitrogen (N) per day; groundwater nitrate loads were estimated to be 0.07 pounds of N per day. Dissolved orthophosphate river loads ranged from 0.12 to 0.20 pounds of phosphorus (P) per day; groundwater orthophosphate loads were estimated to be 0.005 pounds of P per day. This sub-reach had the highest average algal biomass within the study reach. The data suggest that nutrient rich groundwater discharging to the river may create a favorable microenvironment for periphyton that assimilate available nutrients before the groundwater mixes with overlying river water. The source of nitrate in groundwater is likely anthropogenic as groundwater nitrate concentrations above background concentrations were only found along the right bank of the river adjacent to a housing development. Organic-wastewater compounds detected in groundwater samples collected from wells along the right bank within this sub-reach offer independent support that the elevated nitrate concentrations were human-derived.

  9. General Reevaluation and Supplement to Environmental Impact Statement for Flood Control and Related Purposes. Red and Red Lake Rivers at East Grand Forks, Minnesota.

    Science.gov (United States)

    1984-11-01

    Grand Forks. o The Department of Housing and Urban Development, Federal Insurance Administration , conducted the following studies for the city to help...while the mayor is elected for a 2-year term. Major city governmental departments include the Administration , Municipal Court, School System, Police and...Federal legislation is the requirements for formulation - identified in tne "Economic and Environmental Principies and Guidelines fr ,ater and Related

  10. Eukaryotic DNA Replication Fork.

    Science.gov (United States)

    Burgers, Peter M J; Kunkel, Thomas A

    2017-06-20

    This review focuses on the biogenesis and composition of the eukaryotic DNA replication fork, with an emphasis on the enzymes that synthesize DNA and repair discontinuities on the lagging strand of the replication fork. Physical and genetic methodologies aimed at understanding these processes are discussed. The preponderance of evidence supports a model in which DNA polymerase ε (Pol ε) carries out the bulk of leading strand DNA synthesis at an undisturbed replication fork. DNA polymerases α and δ carry out the initiation of Okazaki fragment synthesis and its elongation and maturation, respectively. This review also discusses alternative proposals, including cellular processes during which alternative forks may be utilized, and new biochemical studies with purified proteins that are aimed at reconstituting leading and lagging strand DNA synthesis separately and as an integrated replication fork.

  11. Effects of the Upper Taum Sauk Reservoir Embankment Breach on the Surface-Water Quality and Sediments of the East Fork Black River and the Black River, Southeastern Missouri - 2006-07

    Science.gov (United States)

    Barr, Miya N.

    2009-01-01

    On December 14, 2005, a 680-foot wide section of the upper reservoir embankment of the Taum Sauk pump-storage hydroelectric powerplant located in Reynolds County, Missouri, suddenly failed. This catastrophic event sent approximately 1.5 billion gallons of water into the Johnson's Shut-Ins State Park and into the East Fork Black River, and deposited enormous quantities of rock, soil, and vegetation in the flooded areas. Water-quality data were collected within and below the impacted area to study and document the changes to the riverene system. Data collection included routine, event-based, and continuous surface-water quality monitoring as well as suspended- and streambed-sediment sampling. Surface water-quality samples were collected and analyzed for a suite of physical and chemical constituents including: turbidity; nutrients; major ions such as calcium, magnesium, and potassium; total suspended solids; total dissolved solids; trace metals such as aluminum, iron, and lead; and suspended-sediment concentrations. Suspended-sediment concentrations were used to calculate daily sediment discharge. A peculiar blue-green coloration on the water surface of the East Fork Black River and Black River was evident downstream from the lower reservoir during the first year of the study. It is possible that this phenomenon was the result of 'rock flour' occurring when the upper reservoir embankment was breached, scouring the mountainside and producing extremely fine sediment particles, or from the alum-based flocculent used to reduce turbidity in the lower reservoir. It also was determined that no long-term effects of the reservoir embankment breach are expected as the turbidity and concentrations of trace metals such as total recoverable aluminum, dissolved aluminum, dissolved iron, and suspended-sediment concentration graphically decreased over time. Larger concentrations of these constituents during the beginning of the study also could be a direct result of the alum

  12. Grand Forks - East Grand Forks Urban Water Resources Study. East Grand Forks Flood Fight Manual.

    Science.gov (United States)

    1981-07-01

    may be wiped dry and used. Cans with fitted lids, non-sealed type ( cocoa , baking powder , etc.): If there is damage from water, open and examine. If...temporary means. In consideration of the benefits which are expected to accrue by reason of the participation of the United States in said emergency flood...cabinet-maker. If your insurance allows benefits on damaged furniture, it may be better to apply the allowance on new articles than to pay for repairs on

  13. Mycorrhizae of poplars

    Science.gov (United States)

    R. C. Schultz; J. G. Isebrands; P. P. Kormanik

    1983-01-01

    Poplar hybrids, being screened for short-rotation intensive culture, can form ecto-, endo-, or ectendo-mycorrhizae or may be autotrophic. Different sections of the genus Populus tend to be selective in the type of mycorrhizae formed. Knowledge of which types are formed influences the kinds of propagule production, site preparation, and herbicide...

  14. SC tuning fork

    CERN Multimedia

    The tuning fork used to modulate the radiofrequency system of the synchro cyclotron (SC) from 1957 to 1973. This piece is an unused spare part. The SC was the 1st accelerator built at CERN. It operated from August 1957 until it was closed down at the end of 1990. In the SC the magnetic field did not change with time, and the particles were accelerated in successive pulses by a radiofrequency voltage of some 20kV which varied in frequency as they spiraled outwards towards the extraction radius. The frequency varied from 30MHz to about 17Mz in each pulse. The tuning fork vibrated at 55MHz in vacuum in an enclosure which formed a variable capacitor in the tuning circuit of the RF system, allowing the RF to vary over the appropriate range to accelerate protons from the centre of the macine up to 600Mev at extraction radius. In operation the tips of the tuning fork blade had an amplitude of movement of over 1 cm. The SC accelerator underwent extensive improvements from 1973 to 1975, including the installation of a...

  15. Grand Forks - East Grand Forks Urban Water Resources Study. Grand Forks Flood Fight Manual

    Science.gov (United States)

    1981-07-01

    Road and 8th Avenue South Almonte Avenue and 8th Avenue South Belmont Road and 10th Avenue South Reeves Drive and 10th Avenue South Almonte Avenue...and 10th Avenue South Belmont Road and 11th Avenue South Reeves Drive and 11th Avenue South Midway Reeves Drive and Almonte and lltn Avenue South...Belmont Road and 13th Avenue South Belmont Road and 15th Avenue South Belmont Road and 17th Avenue South Lincoln Drive and Almonte Avenue Lincoln

  16. GROWTH AND PRODUCTIVITY OF POPLAR SPECIES IN SOUTHEASTERN KAZAKHSTAN

    Directory of Open Access Journals (Sweden)

    Dani Sarsekova

    2015-09-01

    Full Text Available A small area of forestation and an acute shortage of timber are reasons to seek ways to improve  productivity and the rational use of forests in the territory of Kazakhstan. A deficit in timber can be compensated, to some extent, by planting stands of fast-growing plantation species, including top and hybrid Populus spp, which are commonly referred to as “poplar”.There is an increased interest in poplar, globally, due to its organic traits and the economic value it provides, including:rapid growth and ability to produce wood that is technically suitable for cutting within 20 years of planting;a source of suitable timber for use in most industries;the ability to grow in soils that are not  generally suitable for agricultural use;a potential source of timber for widespread use in screening, landscape and recreational plantings; andthe ability of most poplar species and hybrids to asexually propagate.There has been extensive planting of poplar trees in Kazakhstan, especially in the south and south-east. Poplar trees have been planted in populated areas, along roads and in forest stands. However, these plantings are unsuitable as a source of timber for commercial or ornamental purposes. Hence, there is a need to establish plantations of poplar for timber supply in Kazakhstan.The  most common types of poplar in this country are the deltoid, Algerian, and Bolle, which were used in the extensive greenery planting of southeastern Kazakhstan. The main factors ensuring high productivity of poplar plantations are the soil conditions of fertility, good aeration and adequate moisture. Results of this study indicate that the greatest height increase occurs in these trees between the age of 5 and 10 years, and for trunk diameter, between the age of 4 and 9 years. After this age, the growth rate gradual declines, with a sharp fall off in the rate noticeable between years 14 and 16. Additionally, results of this study show the high productivity of poplar

  17. On non-forking spectra

    CERN Document Server

    Chernikov, Artem; Shelah, Saharon

    2012-01-01

    Non-forking is one of the most important notions in modern model theory capturing the idea of a generic extension of a type (which is a far-reaching generalization of the concept of a generic point of a variety). To a countable first-order theory we associate its non-forking spectrum - a function of two cardinals kappa and lambda giving the supremum of the possible number of types over a model of size lambda that do not fork over a sub-model of size kappa. This is a natural generalization of the stability function of a theory. We make progress towards classifying the non-forking spectra. On the one hand, we show that the possible values a non-forking spectrum may take are quite limited. On the other hand, we develop a general technique for constructing theories with a prescribed non-forking spectrum, thus giving a number of examples. In particular, we answer negatively a question of Adler whether NIP is equivalent to bounded non-forking. In addition, we answer a question of Keisler regarding the number of cut...

  18. Discrimination method of forked larch trees

    Institute of Scientific and Technical Information of China (English)

    Li Wen-bin; Sun Ren-shan; Liu Xu-hua; Liu Yong

    2006-01-01

    For the demands of automatíc pruning, an effective discrimination rule of the forked and non-forked larch trees is established. First, information of trunk and branch diameters of a larch plantations was collected from the west mountain of Beijing. The growth characteristics of the forked and non-forked trees were studied. Given the statistical characteristics of the trunk and branch diameters, a discriminant function of the forked branch and non-forked larch trees was established statistically. Excellent discrimination results were obtained by the function and the rule. The study presents an effective discrimination rule to separate forked trees from straight trees for automatic pruning.

  19. Tuning fork tests: forgotten art.

    Science.gov (United States)

    Girgis, T F; Shambaugh, G E

    1988-01-01

    Four examples are cited in which tuning fork tests helped in proper selection of patients for surgery, after audiometric air and bone tests were equivocal or gave the wrong diagnostic and prognostic indication.

  20. The Growth Condition Comparison of Seeding Period of 1 2 Poplar Varieties in North-east of Ulan Buh Desert%乌兰布和沙漠东北部12种杨树品种幼苗期生长状况对比

    Institute of Scientific and Technical Information of China (English)

    黄雅茹; 赵英铭; 高君亮; 马迎宾; 余新春; 张格; 张瑞; 孙非; 郝玉光

    2016-01-01

    About 12 Poplar varieties including Beikang and 08 series were introduced as research ob-jects,by means of investigating seeding period survival rate,preserving rate,diameter at breast height and new shoots,using the method of subordinate function to study 12 kinds of fast growing Poplar in see-ding stage in North-east of Ulan Buh Desert adaptability to carry on the comprehensive evaluation.The results showed that the survival rate of fast growing Poplar was between 84.12%and 100%.Sample 08-01,Sample 08-07,Beikang 16 -27 had higher survival rate,the preserving rate was between 68.42% and 100%.08 -07,Beikang16 -27,08 -01 had higher preserving rate.Diameter at breast height increment was in the range of 0.13~1.35cm,and 08-09,08-03,08-01 had higher diameter at breast height increment,new shoots increment was in the range of 19.39~103.88cm,and Beikang 16-27,Beikang 16-8,08-03 had higher new shoots increment.To order by subordinate function,08-01,Beikang 16-27 and 08-09 fast growing Poplar at seeding stage were better adapted to the North-east of Ulan Buh Desert,and can be used as fine species of afforestation of protection forest in this area.%以北抗、08等系列的12种引进速生杨品种为研究对象,调查幼苗期成活率、保存率、胸径、新梢长,运用隶属函数法对12种速生杨幼苗在乌兰布和沙漠东北部的适应性进行综合评价。结果表明:速生杨各品种成活率在84.12%~100%之间,其中成活率较高的为08-01,08-07和北抗16-27;保存率在68.42%~100%之间,较高的为08-07、北抗16-27和08-01;胸径生长量在0.13~1.35cm 范围内,较高的为08-09,08-03,08-01;新梢生长量在19.39~103.88cm范围内,较高的为北抗16-27、北抗16-8和08-03。通过隶属函数值进行排序,08-01、北抗16-27和08-09等3种速生杨品种幼苗期在乌兰布和沙漠东北部的生长适应性较好,可以作为该区防护林造林优良品种。

  1. Control tactics of poplar diseases in China

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Based on the present studies and literatures about the poplar diseases in China, the present study situation of poplar disease was introduced in this paper. 31 kinds of poplar diseases were collected of which there were 14 kinds of leaves disease, 11 kinds of branch disease, 4 kinds of root disease, 2 kinds of stand rot. Each poplar species was studied on the harm, distribution, symptom, pathogens, occurrence regulation and control measures. According to previously studies, the sustained control tactics of poplar disease were summarized in this paper.

  2. FBH1 Catalyzes Regression of Stalled Replication Forks

    DEFF Research Database (Denmark)

    Fugger, Kasper; Mistrik, Martin; Neelsen, Kai J

    2015-01-01

    DNA replication fork perturbation is a major challenge to the maintenance of genome integrity. It has been suggested that processing of stalled forks might involve fork regression, in which the fork reverses and the two nascent DNA strands anneal. Here, we show that FBH1 catalyzes regression...... a model whereby FBH1 promotes early checkpoint signaling by remodeling of stalled DNA replication forks....... of a model replication fork in vitro and promotes fork regression in vivo in response to replication perturbation. Cells respond to fork stalling by activating checkpoint responses requiring signaling through stress-activated protein kinases. Importantly, we show that FBH1, through its helicase activity...

  3. Continuous steam hydrolysis of tulip poplar

    Energy Technology Data Exchange (ETDEWEB)

    Fieber, C.A.; Roberts, R.S.; Faass, G.S.; Muzzy, J.D.; Colcord, A.R.; Bery, M.K.

    1982-01-01

    The continuous hydrolysis of poplar chips by steam at 300-350 psi resulted in the separation of hemicellulose (I) cellulose and lignin components. The I fraction was readily depolymerised by steam to acetic acid, furfural, methanol, and xylose.

  4. Effect of water regime on poplar cultivation

    Directory of Open Access Journals (Sweden)

    Letić Ljubomir

    2006-01-01

    Full Text Available The effect of water regime on the growth and development of plantations of hydrologically conditioned species, poplars was researched in the alluvial plain of the river Tamiš. The investigations were carried out during the period 2000-2003 on the area of FA "Opovo", KO Sakule, and the study results elucidate the very complex relationships between the hydrological conditions of the site and the growth and increment of the study poplar plantations, cl. I-214. .

  5. Improvement of controlled pollination techniques of poplar

    Institute of Scientific and Technical Information of China (English)

    ZHOU Zhong-cheng; LIU Zong-you; HOU Kai-ju; SUN Xian-meng; ZHANG Ji-he; SHEN Bao-xian

    2008-01-01

    Over a number of years, in order to find substitutes for two traditional poplar pollination techniques: outdoor bridging trees and indoor cutting with water culture, research into two new pollination methods of uprooted outdoor seed trees and outdoor cutting branches was carried out. The advantages of two new and improved techniques were of efficiency, economy, safety and ease of operation. The methods can be applied in hybridization and breeding of poplar and other easy-to-root trees.

  6. Study on Poplar Industrialization in Jiangsu:(3)Conclusions and Recommendations on Poplar Industrialization Management

    Institute of Scientific and Technical Information of China (English)

    SHEN Wenxing; ZHOU Dingguo; XU Xinping

    2006-01-01

    This article concludes that the creation of a new industrial management,including the innovation of management institution,operation system,industrial policies and industrial technology,is a solution to the management optimization of the poplar industry.The further development of the poplar industry is beneficial to the sustainable development of the society,economy and ecological environment in Jiangsu province.

  7. South Fork Holston River basin 1988 biomonitoring

    Energy Technology Data Exchange (ETDEWEB)

    Saylor, C.F.; Ahlstedt, S.A.

    1990-06-01

    There is concern over the effects of shifts in land use use practices on the aquatic fauna of streams in the South Fork Holston River basin in northwestern North Carolina and southwestern Virginia. Trout reproduction has noticeably declined in the Watauga River subbasin. The Watauga River and Elk River subbasins have been subjected to commercial and resort development. The Middle fork Holston River and the upper South Fork Holston River subbasins have been affected by agricultural and mining activities, respectively (Cox, 1986). To aid reclamation and management of the South Fork Holston basin, Tennessee Valley Authority (TVA) biologists conducted biomonitoring--including index of biotic integrity and macroinvertebrate sampling--on the Middle Fork Holston, South Fork Holston, Watauga, and Elk Rivers to assess cumulative impairment related to changes in habitat and pollutant loading in these subbasins. Biomonitoring can detect environmental degradation, help document problem areas, and assist in development of strategies for managing water quality. This report discusses the methods and materials and results of the biomonitoring of South Fork Holston River Basin. 13 refs., 5 figs., 12 tabs.

  8. Grand Forks - East Grand Forks Urban Water Resources Study. Background Information Appendix.

    Science.gov (United States)

    1981-07-01

    coulees is too saline for most plants. Roadsides and tracts maintained as prairie provide the "classic" wildflower habitat. Sedges and coarse grasses...bird habitat are found in the study area: croplands, wetlands, tallgrass prairie , fencerows and roadsides, shelter- belts, floodplain forest, and...secondary bird species of the tallgrass prairie , including the plovers, western meadowlark, cowbird, and bobolink, are listed in table 18. 89 I. TABLE 18

  9. Grand Forks - East Grand Forks Urban Water Resources Study. Flood Control Appendix.

    Science.gov (United States)

    1981-07-01

    was separated into six separate reaches as listed below and shown on figure 1. Reach I - South city limits to Almonte Avenue. This reach includes...project. Reach 2 - Almonte Avenue to Seventh Avenue South extended. This reach covers the existing Lincoln Park levee/floodwall project. Reach 3...floodwall [3] with an average height of 5.4 feet extending from Almonte Avenue extended eastward to the existing Lincoln Park floodwall. They would also

  10. Grand Forks - East Grand Forks Urban Water Resources Study. Plan Formulation Appendix.

    Science.gov (United States)

    1981-07-01

    South city limits to Almonte Avenue. This reach includes the Belmont Coulee and Belmont Road areas from the southern city limits to near the upstream...end of the Lincoln Park levee/floodwall project. Reach 2 - Almonte Avenue to Seventh Avenue South extended. This reach covers the Lincoln Park levee

  11. Grand Forks - East Grand Forks Urban Water Resources Study. Summary Report.

    Science.gov (United States)

    1981-07-01

    climatic, physical, biological , and socioeconomic characteristics which yielded common water resource manage- ment problems and goals. Federal, State...and-o load. follo-up adjutment. f. ay cawse hiockdmrprhioe iv arginal sesame Cacr ein, ol i~ag ftMandetory I. Mechanical device. rend. anoe deapte .er I...Quality 1a effct . Ma effect. No effect. Wildlife No ffect. 1M effert. No effect. Hydrologic Ma affect. No affect. 1scr.ol.d treflow. Public Realth Higher

  12. Degradation of poplar bark by Panaeolus

    Energy Technology Data Exchange (ETDEWEB)

    Scurti, J.C.; Fiussello, N.; Gullino, M.L.; Ferrara, R.

    1978-01-01

    Pure cultures of 41 strains of Paneolus were tested for their ability to break down poplar bark with a view to their possible use for biodegradation of this waste product of paper manufacture. Most strains were able to grow (slowly) on sterilized poplar bark and showed high ligninolytic activity. Some strains also showed cellulolytic action. Almost all the strains showed phenol-oxidase activity, but there was no correlation between lignin decomposition and phenol-oxidase activity. The amounts of bark degraded by the fungi were relatively small (3.2 - 13.0% loss of dry weight after six months incubation).

  13. FBH1 Catalyzes Regression of Stalled Replication Forks

    Directory of Open Access Journals (Sweden)

    Kasper Fugger

    2015-03-01

    Full Text Available DNA replication fork perturbation is a major challenge to the maintenance of genome integrity. It has been suggested that processing of stalled forks might involve fork regression, in which the fork reverses and the two nascent DNA strands anneal. Here, we show that FBH1 catalyzes regression of a model replication fork in vitro and promotes fork regression in vivo in response to replication perturbation. Cells respond to fork stalling by activating checkpoint responses requiring signaling through stress-activated protein kinases. Importantly, we show that FBH1, through its helicase activity, is required for early phosphorylation of ATM substrates such as CHK2 and CtIP as well as hyperphosphorylation of RPA. These phosphorylations occur prior to apparent DNA double-strand break formation. Furthermore, FBH1-dependent signaling promotes checkpoint control and preserves genome integrity. We propose a model whereby FBH1 promotes early checkpoint signaling by remodeling of stalled DNA replication forks.

  14. Diversity of arthropod community in transgenic poplar-cotton ecosystems.

    Science.gov (United States)

    Zhang, D J; Lu, Z Y; Liu, J X; Li, C L; Yang, M S

    2015-12-02

    Poplar-cotton agro-ecosystems are the main agricultural planting modes of plain cotton fields in China. Here, we performed a systematic survey of the diversity and population of arthropod communities in four different combination of poplar-cotton eco-systems, including I) non-transgenic poplar and non-transgenic cotton fields; II) non-transgenic poplar and transgenic cotton fields [Bacillus thuringiensis (Bt) cotton]; III) Bt transgenic poplar (high insect resistant strain Pb29) and non-transgenic cotton; and IV) transgenic poplar and transgenic cotton fields, over a period of 3 years. Based on the statistical methods used to investigate community ecology, the effects of transgenic ecosystems on the whole structure of the arthropod community, on the structure of arthropods in the nutritive layer, and on the similarity of arthropod communities were evaluated. The main results were as follows: the transgenic poplar-cotton ecosystem has a stronger inhibitory effect on insect pests and has no impact on the structure of the arthropod community, and therefore, maintains the diversity of the arthropod community. The character index of the community indicated that the structure of the arthropod community of the transgenic poplar-cotton ecosystem was better than that of the poplar-cotton ecosystem, and that system IV had the best structure. As for the abundance of nutritional classes, the transgenic poplar-cotton ecosystem was also better than that of the non-transgenic poplar-cotton ecosystem. The cluster analysis and similarity of arthropod communities between the four different transgenic poplar-cotton ecosystems illustrated that the structure of the arthropod community excelled in the small sample of the transgenic poplar-cotton ecosystems.

  15. Mycorrhizal formation of nine ectomycorrhizal fungi on poplar cuttings

    Institute of Scientific and Technical Information of China (English)

    Lei MA; Xiaoqin WU; Ling ZHENG

    2008-01-01

    In order to discover which ectomycorrhizal-(ECM) fungi have better growth-promoting effects on poplars, cuttings from four poplar species were inoculated with nine species of ECM fungi by three methods. We investigated the status of mycorrhizal formation and the effects of these fungi on the growth of the poplars. The results show that Xrocomus chrysentero (Xc), Boletus edu-lis (Be), Pisolithus tinctorius (Pt) and Laccaria amethystea (La) formed clear ectomycorrhizal symbiosis with the poplar seedlings. Among these four ECM fungi, Xc had the greatest ability to develop mycorrhizae with all four poplar species. Be shows a greater ability to form mycor-rhizae with Populus deltoides Bartr cv. 'Lux' (Poplar I-69). Pt and La had relatively weaker abilities of colonization. The other five ECM fungal species, i.e., Scleroderma luteus (S1), Leeeinum scabrum (Ls), Boletus speeiosus (Bs), Calvatia eraniiformis (Cc) and Rhizopogen luteous (RI) could not easily form mycorrhizae with poplar seed-lings grown in sterilized substrates, but could do so in non-sterilized soil. With the method of drilling and inject-ing liquid inoculum, a simple operation, the mycorrhizal infection rates were higher than with the other two meth-ods, applying solid inoculum as fertilizer at the bottom of the pots and dipping roots in the inoculum slurry. P. simonii Carr. formed mycorrhizae with most of the nine ECM fungi. P. × euramericana (Dode) Guinier cv. 'San Martino' (Poplar 1-72) and P. deltoids Harvard × P. del-toids Lux (Poplar NL-351) had the highest compatibility with Pt. Poplar I-69 shows the highest compatibility with Xc. The study indicates that the optimal ECM fungi for poplars I-69, I-72 and NL-351 were Be, Xc and Pt, respectively. The optimal fungi for P. simonii Carr. were Xc and Be. These ECM fungi promoted the growth of the poplar seedlings significantly.

  16. Forks impacts and motivations in free and open source projects

    Directory of Open Access Journals (Sweden)

    R. Viseur

    2012-02-01

    Full Text Available Forking is a mechanism of splitting in a community and is typically found in the free and open source software field. As a failure of cooperation in a context of open innovation, forking is a practical and informative subject of study. In-depth researches concerning the fork phenomenon are uncommon. We therefore conducted a detailed study of 26 forks from popular free and open source projects. We created fact sheets, highlighting the impact and motivations to fork. We particularly point to the fact that the desire for greater technical differentiation and problems of project governance are major sources of conflict.

  17. Cultural Resource Investigation of the Grand Forks/East Grand Forks Urban Study and the East Grand Forks Flood Control Project,

    Science.gov (United States)

    1981-04-01

    Quarterly. A variety of monographs Non North Dakota and Minnesota prehistory, history, geology, geo- graphy, and botany were checked as were unpublished...1973- Taught internship students from Macalester College and Hamline 1975 University, while enployed at The Science IMseum of Minnesota. 1977 Taught

  18. Ground-Tracking With a Forked Tongue

    Institute of Scientific and Technical Information of China (English)

    1995-01-01

    Scientists since Aristotle’s day have wondered why the tongues of snakes and many lizards——are forked, a trait that dates from at least the Cretaceous,more than 65 million years ago.Now Kurt Schwenk,a University of Connecticut evolutionary biologist, thinks he knows the answer. "It gives them the abil-

  19. Homologous Recombination as a Replication Fork Escort: Fork-Protection and Recovery

    Directory of Open Access Journals (Sweden)

    Audrey Costes

    2012-12-01

    Full Text Available Homologous recombination is a universal mechanism that allows DNA repair and ensures the efficiency of DNA replication. The substrate initiating the process of homologous recombination is a single-stranded DNA that promotes a strand exchange reaction resulting in a genetic exchange that promotes genetic diversity and DNA repair. The molecular mechanisms by which homologous recombination repairs a double-strand break have been extensively studied and are now well characterized. However, the mechanisms by which homologous recombination contribute to DNA replication in eukaryotes remains poorly understood. Studies in bacteria have identified multiple roles for the machinery of homologous recombination at replication forks. Here, we review our understanding of the molecular pathways involving the homologous recombination machinery to support the robustness of DNA replication. In addition to its role in fork-recovery and in rebuilding a functional replication fork apparatus, homologous recombination may also act as a fork-protection mechanism. We discuss that some of the fork-escort functions of homologous recombination might be achieved by loading of the recombination machinery at inactivated forks without a need for a strand exchange step; as well as the consequence of such a model for the stability of eukaryotic genomes.

  20. Homologous recombination as a replication fork escort: fork-protection and recovery.

    Science.gov (United States)

    Costes, Audrey; Lambert, Sarah A E

    2012-12-27

    Homologous recombination is a universal mechanism that allows DNA repair and ensures the efficiency of DNA replication. The substrate initiating the process of homologous recombination is a single-stranded DNA that promotes a strand exchange reaction resulting in a genetic exchange that promotes genetic diversity and DNA repair. The molecular mechanisms by which homologous recombination repairs a double-strand break have been extensively studied and are now well characterized. However, the mechanisms by which homologous recombination contribute to DNA replication in eukaryotes remains poorly understood. Studies in bacteria have identified multiple roles for the machinery of homologous recombination at replication forks. Here, we review our understanding of the molecular pathways involving the homologous recombination machinery to support the robustness of DNA replication. In addition to its role in fork-recovery and in rebuilding a functional replication fork apparatus, homologous recombination may also act as a fork-protection mechanism. We discuss that some of the fork-escort functions of homologous recombination might be achieved by loading of the recombination machinery at inactivated forks without a need for a strand exchange step; as well as the consequence of such a model for the stability of eukaryotic genomes.

  1. Code Forking, Governance, and Sustainability in Open Source Software

    Directory of Open Access Journals (Sweden)

    Juho Lindman

    2013-01-01

    Full Text Available The right to fork open source code is at the core of open source licensing. All open source licenses grant the right to fork their code, that is to start a new development effort using an existing code as its base. Thus, code forking represents the single greatest tool available for guaranteeing sustainability in open source software. In addition to bolstering program sustainability, code forking directly affects the governance of open source initiatives. Forking, and even the mere possibility of forking code, affects the governance and sustainability of open source initiatives on three distinct levels: software, community, and ecosystem. On the software level, the right to fork makes planned obsolescence, versioning, vendor lock-in, end-of-support issues, and similar initiatives all but impossible to implement. On the community level, forking impacts both sustainability and governance through the power it grants the community to safeguard against unfavourable actions by corporations or project leaders. On the business-ecosystem level forking can serve as a catalyst for innovation while simultaneously promoting better quality software through natural selection. Thus, forking helps keep open source initiatives relevant and presents opportunities for the development and commercialization of current and abandoned programs.

  2. Use of Sulfometuron in Hybrid Poplar Energy Plantations

    Science.gov (United States)

    Daniel A. Netzer

    1995-01-01

    Reports that low rates of sulfometuron, 70 grams per hactare (1 ounce product or 0.75 ounces active ingredient per acre), applied when hybrid poplars are completely dormant, can provide season-long weed control and increase hybrid poplar growth. If plantation access is not possible before growth activity begins in the spring, late fall application of this herbicide...

  3. Quartz tuning fork based microwave impedance microscopy

    Science.gov (United States)

    Cui, Yong-Tao; Ma, Eric Yue; Shen, Zhi-Xun

    2016-06-01

    Microwave impedance microscopy (MIM), a near-field microwave scanning probe technique, has become a powerful tool to characterize local electrical responses in solid state samples. We present the design of a new type of MIM sensor based on quartz tuning fork and electrochemically etched thin metal wires. Due to a higher aspect ratio tip and integration with tuning fork, such design achieves comparable MIM performance and enables easy self-sensing topography feedback in situations where the conventional optical feedback mechanism is not available, thus is complementary to microfabricated shielded stripline-type probes. The new design also enables stable differential mode MIM detection and multiple-frequency MIM measurements with a single sensor.

  4. Study on Poplar Industrialization in Jiangsu: (2) Present Status and Problems of Poplar Industrialization

    Institute of Scientific and Technical Information of China (English)

    SHEN Wenxing; ZHOU Dingguo; XU Xinping

    2006-01-01

    This paper lists the existing main problems that poplar industry faces in Jiangsu and analyses the causes and the activities of different industry related to management institution and system according to the factors of knowledge infrastructure, institutional setups, government policies and production structure.

  5. The forked flap repair for hypospadias

    Directory of Open Access Journals (Sweden)

    Anil Chadha

    2012-01-01

    Full Text Available Context: Despite the abundance of techniques for the repair of Hypospadias, its problems still persist and a satisfactory design to correct the penile curvature with the formation of neourethra from the native urethral tissue or genital or extragenital tissues, with minimal postoperative complications has yet to evolve. Aim: Persisting with such an endeavor, a new technique for the repair of distal and midpenile hypospadias is described. Materials and Methods: The study has been done in 70 cases over the past 11 years. The "Forked-Flap" repair is a single stage method for the repair of such Hypospadias with chordee. It takes advantage of the rich vascular communication at the corona and capitalizes on the established reliability of the meatal based flip-flap. The repair achieves straightening of the curvature of the penis by complete excision of chordee tissue from the ventral surface of the penis beneath the urethral plate. The urethra is reconstructed using the native plate with forked flap extensions and genital tissue relying on the concept of meatal based flaps. Water proofing by dartos tissue and reinforcement by Nesbit′s prepucial tissue transfer completes the one stage procedure. Statistical Analysis: An analysis of 70 cases of this single stage technique of repair of penile hypospadias with chordee, operated at 3 to 5 years of age over the past 11 years is presented. Results and Conclusion: The Forked Flap gives comparable and replicable results; except for a urethrocutaneous fistula rate of 4% no other complications were observed.

  6. Code forking in open-source software: a requirements perspective

    CERN Document Server

    Ernst, Neil A; Mylopoulos, John

    2010-01-01

    To fork a project is to copy the existing code base and move in a direction different than that of the erstwhile project leadership. Forking provides a rapid way to address new requirements by adapting an existing solution. However, it can also create a plethora of similar tools, and fragment the developer community. Hence, it is not always clear whether forking is the right strategy. In this paper, we describe a mixed-methods exploratory case study that investigated the process of forking a project. The study concerned the forking of an open-source tool for managing software projects, Trac. Trac was forked to address differing requirements in an academic setting. The paper makes two contributions to our understanding of code forking. First, our exploratory study generated several theories about code forking in open source projects, for further research. Second, we investigated one of these theories in depth, via a quantitative study. We conjectured that the features of the OSS forking process would allow new...

  7. Evolution of tail fork depth in genus Hirundo.

    Science.gov (United States)

    Hasegawa, Masaru; Arai, Emi; Kutsukake, Nobuyuki

    2016-02-01

    A classic example of a sexually selected trait, the deep fork tail of the barn swallow Hirundo rustica is now claimed to have evolved and be maintained mainly via aerodynamic advantage rather than sexually selected advantage. However, this aerodynamic advantage hypothesis does not clarify which flight habits select for/against deep fork tails, causing diversity of tail fork depth in hirundines. Here, by focusing on the genus Hirundo, we investigated whether the large variation in tail fork depth could be explained by the differential flight habits. Using a phylogenetic comparative approach, we found that migrant species had deeper fork tails, but less colorful plumage, than the other species, indicating that migration favors a specific trait, deep fork tails. At the same time, tail fork depth but not plumage coloration decreased with increasing bill size - a proxy of prey size, suggesting that foraging on larger prey items favors shallower fork tails. Variation of tail fork depth in the genus Hirundo may be explained by differential flight habits, even without assuming sexual selection.

  8. 33 CFR 207.370 - Big Fork River, Minn.; logging.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Big Fork River, Minn.; logging. 207.370 Section 207.370 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE NAVIGATION REGULATIONS § 207.370 Big Fork River, Minn.; logging. (a) During the season of navigation, parties engaged in...

  9. DIMENSIONAL STABILITY OF METHYL METHACRYLATE HARDENED HYBRID POPLAR WOOD

    Directory of Open Access Journals (Sweden)

    Wei-Dan Ding,

    2011-11-01

    Full Text Available This study examines the dimensional stability of fast-growing poplar clones wood after treatment by impregnation with methyl methacrylate (MMA. Six hybrid poplar clones from one plantation in Quebec were sampled. The effects of hardening with MMA on density as well as longitudinal, radial, tangential, and volumetric swelling properties (S, water uptake capacity (D, anti-swelling efficiency (ASE, and water repellent efficiency (WRE after soaking were investigated. Hardening treatment increased the density of all poplar woods by 1.2 to 1.6 and decreased the inner water migration rate during soaking. S and D values of hardened woods were significantly lower than those of controls, depending on the clone type. ASE and WRE values suggested that incorporating MMA effectively improved the dimensional stability of poplar wood at the early soaking stage, but was less effective in the long term.

  10. Yield physiology of short rotation intensively cultured poplars

    Science.gov (United States)

    J. G. Isebrands; N. D. Nelson; D. I. Dickmann; D. A. Michael

    1983-01-01

    An integrated research approach is described for studying yield physiology of short rotation intensively cultured (SRIC) poplar plantations. Branch architecture differs with clone and stand density, but the clonal ranking of important branch characteristics does not change with spacing.

  11. Preliminary Functional-Structural Modeling on Poplar (Salicaceae)

    CERN Document Server

    Liu, Dongxiang; Letort, Véronique; Xing, Meijun; Gang, Yang; Huang, Xinyuan; Cao, Weiqun

    2010-01-01

    Poplar is one of the best fast-growing trees in the world, widely used for windbreak and wood product. Although architecture of poplar has direct impact on its applications, it has not been descried in previous poplar models, probably because of the difficulties raised by measurement, data processing and parameterization. In this paper, the functional-structural model GreenLab is calibrated by using poplar data of 3, 4, 5, 6 years old. The data was acquired by simplifying measurement. The architecture was also simplified by classifying the branches into several types (physiological age) using clustering analysis, which decrease the number of parameters. By multi-fitting the sampled data of each tree, the model parameters were identified and the plant architectures at different tree ages were simulated.

  12. Poplar: A Java Extension for Evolvable Component Integration

    CERN Document Server

    Nyström-Persson, Johan

    2011-01-01

    The Java programming language contains many features that aid component-based software development (CBSD), such as interfaces, visibility levels, and strong support for encapsulation. However, component evolution often causes so-called breaking changes, largely because of the rigidity of component interconnections in the form of explicit method calls and field accesses. We present a Java extension, Poplar, which we are currently developing. In Poplar, inter-component dependencies are expressed using declarative queries; concrete linking code, generated using a planning algorithm, replaces these at compile time. Poplar includes a minimal specification language based on typestate-like protocols and labels, and a lightweight effect system, which ensures the absence of unwanted interference between hand-written code and generated code. We give several examples of fully automatic component integration using Poplar, and demonstrate its potential to simplify object-oriented software development greatly through evolv...

  13. Field test of new poplar clone in Shangdong Province

    Institute of Scientific and Technical Information of China (English)

    QIN Guang-hua; JIANG Yue-zhong; QIAO Yu-ling; B.Nottola

    2003-01-01

    Poplar is one of the dominant tree species for the establishment of fast growing plantations in Shandong Province. Eighteen poplar clones belonging to Populus aigeiros section were introduced from Italy, Turkey and domestic regions. Populus deltoides cv. 'Lux' I-69/55 (I-69), which was widely used in Shandong Province, China, was taken as control clone (I-69). Following a randomized complete block design, seedling test and controlled afforestation trials were carried out at Juxian County, Caoxian County and Laiyang City. The results showed that the poplar clone (Populus × euramericana cv. '102/74'), namely 102/74, performed well both in terms of adaptability and growth rate. The mean height of 13.9 m (H), diameter at breast height of 18.0 cm (DBH) and volume growth of 0.1445 m3 (V) were 2.2 %, 21.6% and 52.9 % higher than those of I-69 (CK), respectively, at the age of 5 years at three experimental sites. Moreover, the clone can be propagated easily and showed high resistance to poplar disease, pest as well as salinity and had longer growing period. Furthermore, wood basic density and fiber length of new poplar clone (102/74) were as same as I-69 (CK). It was concluded that the selected clone (102/74) was ideal for the establishment of fast-growing poplar plantations, especially for the pulpwood plantations in Shandong Province.

  14. Poplar and its bacterial endophytes: coexistence and harmony

    Energy Technology Data Exchange (ETDEWEB)

    van der Lelie, D.; Taghavi, S.; Monchy, S.; Schwender, J.; Miller, L.; Ferrieri, R.; Rogers, A.; Zhu, W.; Weyens, N.; Vangronsveld, J.; Newman, L.

    2009-09-01

    Associations between plants and microorganisms are very complex and are the subject of an increasing number of studies. Here, we specifically address the relationship between poplar and its endophytic bacteria. The role and importance of endophytic bacteria in growth and development of their host plants is still underestimated. However, since many endophytes have a beneficial effect on their host, an improved understanding of the interaction between poplar and its endophytic bacteria has the potential to provide major breakthroughs that will improve the productivity of poplar. Endophytic bacteria can improve plant growth and development in a direct or indirect way. Direct plant growth promoting mechanisms may involve nitrogen fixation, production of plant growth regulators such as auxins, cytokinins and gibberellins, and suppression of stress ethylene synthesis by 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. Endophytic bacteria can indirectly benefit the plant by preventing the growth or activity of plant pathogens through competition for space and nutrients, antibiosis, production of hydrolytic enzymes, inhibition of pathogen-produced enzymes or toxins, and through systemic induction of plant defense mechanisms. Examples of applications for custom endophyte-host partnerships include improved productivity and establishment of poplar trees on marginal soils and the phytoremediation of contaminated soils and groundwater. A systems biology approach to understand the synergistic interactions between poplar and its beneficial endophytic bacteria represents an important field of research, which is facilitated by the recent sequencing of the genomes of poplar and several of its endophytic bacteria.

  15. Soil Carbon Stocks in Two Hybrid Poplar-Hay Crop Systems in Southern Quebec, Canada

    Directory of Open Access Journals (Sweden)

    Kiara Winans

    2014-08-01

    Full Text Available Tree-based intercropping (TBI systems, consisting of a medium to fast-growing woody species planted in widely-spaced rows with crops cultivated between tree rows, are a potential sink for atmospheric carbon dioxide (CO2. TBI systems contribute to farm income in the long-term by improving soil quality, as indicated by soil carbon (C storage, generating profits from crop plus tree production and potentially through C credit trading. The objectives of the current study were: (1 to evaluate soil C and nitrogen (N stocks in soil depth increments in the 0–30 cm layer between tree rows of nine-year old hybrid poplar-hay intercropping systems, to compare these to C and N stocks in adjacent agricultural systems; and (2 to determine how hay yield, litterfall and percent total light transmittance (PTLT were related to soil C and N stocks between tree rows and in adjacent agricultural systems. The two TBI study sites (St. Edouard and St. Paulin had a hay intercrop with alternating rows of hybrid poplar clones and hardwoods and included an adjacent agricultural system with no trees (i.e., the control plots. Soil C and N stocks were greater in the 0–5 cm depth increment of the TBI system within 1 m of the hardwood row, to the west of the poplar row, compared to the sampling point 1 m east of poplar at St. Edouard (p = 0.02. However, the agricultural system stored more soil C than the nine-year old TBI system in the 20–30 cm and 0–30 cm depth increments. Accumulation of soil C in the 20–30 cm depth increment could be due to tillage-induced burial of non-harvested crop residues at the bottom of the plow-pan. Soil C and N stocks were similar at all depth increments in TBI and agricultural systems at St. Paulin. Soil C and N stocks were not related to hay yield, litterfall and PTLT at St. Paulin, but hay yield and PTLT were significantly correlated (R = 0.87, p < 0.05, n = 21, with lower hay yield in proximity to trees in the TBI system and similar hay

  16. Continuous steam hydrolysis of tulip poplar

    Energy Technology Data Exchange (ETDEWEB)

    Fieber, C.; Colcord, A.R.; Faass, S.; Muzzy, J.D.; Roberts, R.S.

    1982-08-01

    To produce ethanol from hardwood it is desirable to fractionate the hardwood in order to produce a relatively pure cellulosic pulp for dilute acid hydrolysis. An experimental investigation of continuous steam hydrolysis of tulip poplar wood chips indicates that over 90% of the lignin present can be extracted by 0.1N sodium hydroxide, resulting in a cellulose pulp containing over 90% hexosan. The study was performed using a Stake Technology, Ltd., continuous digester rated at one oven dry ton per hour of wood chips. The yields of hexosans, hexoses, xylan, xylose, lignin, furfural, acetic acid and methanol were determined as a function of residence time and steam pressure in the digester. The information provides a basis for establishing a material and energy balance for a hardwood to ethanol plant.

  17. Development of Tuning Fork Based Probes for Atomic Force Microscopy

    Science.gov (United States)

    Jalilian, Romaneh; Yazdanpanah, Mehdi M.; Torrez, Neil; Alizadeh, Amirali; Askari, Davood

    2014-03-01

    This article reports on the development of tuning fork-based AFM/STM probes in NaugaNeedles LLC for use in atomic force microscopy. These probes can be mounted on different carriers per customers' request. (e.g., RHK carrier, Omicron carrier, and tuning fork on a Sapphire disk). We are able to design and engineer tuning forks on any type of carrier used in the market. We can attach three types of tips on the edge of a tuning fork prong (i.e., growing Ag2Ga nanoneedles at any arbitrary angle, cantilever of AFM tip, and tungsten wire) with lengths from 100-500 μm. The nanoneedle is located vertical to the fork. Using a suitable insulation and metallic coating, we can make QPlus sensors that can detect tunneling current during the AFM scan. To make Qplus sensors, the entire quartz fork will be coated with an insulating material, before attaching the nanoneedle. Then, the top edge of one prong is coated with a thin layer of conductive metal and the nanoneedle is attached to the fork end of the metal coated prong. The metal coating provides electrical connection to the tip for tunneling current readout and to the electrodes and used to read the QPlus current. Since the amount of mass added to the fork is minimal, the resonance frequency spectrum does not change and still remains around 32.6 KHz and the Q factor is around 1,200 in ambient condition. These probes can enhance the performance of tuning fork based atomic microscopy.

  18. Wireless tuning fork gyroscope for biomedical applications

    Science.gov (United States)

    Abraham, Jose K.; Varadan, Vijay K.; Whitchurch, Ashwin K.; Sarukesi, K.

    2003-07-01

    This paper presents the development of a Bluetooth enabled wireless tuning fork gyroscope for the biomedical applications, including gait phase detection system, human motion analysis and physical therapy. This gyroscope is capable of measuring rotation rates between -90 and 90 and it can read the rotation information using a computer. Currently, the information from a gyroscope can trigger automobile airbag deployment during rollover, improve the accuracy and reliability of GPS navigation systems and stabilize moving platforms such as automobiles, airplanes, robots, antennas, and industrial equipment. Adding wireless capability to the existing gyroscope could help to expand its applications in many areas particularly in biomedical applications, where a continuous patient monitoring is quite difficult. This wireless system provides information on several aspects of activities of patients for real-time monitoring in hospitals.

  19. Chemical and biological sensing using tuning forks

    Science.gov (United States)

    Tao, Nongjian; Boussaad, Salah

    2012-07-10

    A device for sensing a chemical analyte is disclosed. The device is comprised of a vibrating structure having first and second surfaces and having an associated resonant frequency and a wire coupled between the first and second surfaces of the vibrating structure, wherein the analyte interacts with the wire and causes a change in the resonant frequency of the vibrating structure. The vibrating structure can include a tuning fork. The vibrating structure can be comprised of quartz. The wire can be comprised of polymer. A plurality of vibrating structures are arranged in an array to increase confidence by promoting a redundancy of measurement or to detect a plurality of chemical analytes. A method of making a device for sensing a chemical analyte is also disclosed.

  20. Investigation of Carbohydrate Compositions for Poplar Ⅰ-214 and Chinese Fir

    Institute of Scientific and Technical Information of China (English)

    HUANG Luohua; QIN Tefu; MAGARA Kengo

    2006-01-01

    The carbohydrate compositions of poplar Ⅰ-214 and Chinese fir were investigated by the methods of hydrolysis and HPLC.The result showed that the contents of glucose,xylose and arabinose in poplar Ⅰ-214 are higher than those in Chinese fir,while contents of rhamnose and mannose in poplar Ⅰ-214 are lower than those in Chinese fir.

  1. Fish Creek, South Fork Koyukuk, Koyukuk

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The intent of this study was to gather general information on the wildlife, human use, and terrain in the Fish Creek (east boundary) to Koyukuk (west boundary)...

  2. The Trail Inventory of Deep Fork NWR [Cycle 2

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The purpose of this report is to create a baseline inventory of all non-motorized trails on Deep Fork National Wildlife Refuge. Trails in this inventory are eligible...

  3. Regulation of replication fork progression through histone supply and demand

    DEFF Research Database (Denmark)

    Groth, Anja; Corpet, Armelle; Cook, Adam J L

    2007-01-01

    DNA replication in eukaryotes requires nucleosome disruption ahead of the replication fork and reassembly behind. An unresolved issue concerns how histone dynamics are coordinated with fork progression to maintain chromosomal stability. Here, we characterize a complex in which the human histone...... chaperone Asf1 and MCM2-7, the putative replicative helicase, are connected through a histone H3-H4 bridge. Depletion of Asf1 by RNA interference impedes DNA unwinding at replication sites, and similar defects arise from overproduction of new histone H3-H4 that compromises Asf1 function. These data link Asf......1 chaperone function, histone supply, and replicative unwinding of DNA in chromatin. We propose that Asf1, as a histone acceptor and donor, handles parental and new histones at the replication fork via an Asf1-(H3-H4)-MCM2-7 intermediate and thus provides a means to fine-tune replication fork...

  4. Inventory and Monitoring Plan for Deep Fork National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This Inventory and Monitoring Plan (IMP) is prepared to document the inventory and monitoring surveys that will, or could be conducted at Deep Fork National Wildlife...

  5. Assembly of Slx4 signaling complexes behind DNA replication forks.

    Science.gov (United States)

    Balint, Attila; Kim, TaeHyung; Gallo, David; Cussiol, Jose Renato; Bastos de Oliveira, Francisco M; Yimit, Askar; Ou, Jiongwen; Nakato, Ryuichiro; Gurevich, Alexey; Shirahige, Katsuhiko; Smolka, Marcus B; Zhang, Zhaolei; Brown, Grant W

    2015-08-13

    Obstructions to replication fork progression, referred to collectively as DNA replication stress, challenge genome stability. In Saccharomyces cerevisiae, cells lacking RTT107 or SLX4 show genome instability and sensitivity to DNA replication stress and are defective in the completion of DNA replication during recovery from replication stress. We demonstrate that Slx4 is recruited to chromatin behind stressed replication forks, in a region that is spatially distinct from that occupied by the replication machinery. Slx4 complex formation is nucleated by Mec1 phosphorylation of histone H2A, which is recognized by the constitutive Slx4 binding partner Rtt107. Slx4 is essential for recruiting the Mec1 activator Dpb11 behind stressed replication forks, and Slx4 complexes are important for full activity of Mec1. We propose that Slx4 complexes promote robust checkpoint signaling by Mec1 by stably recruiting Dpb11 within a discrete domain behind the replication fork, during DNA replication stress.

  6. An inventory of wildlife resources, Marsh Fork, summer 1973

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Bureau of Sport Fisheries and Wildlife contracted us to do a wildlife resource inventory of the Marsh Fork in summer, 1973. We had planned the inventory in two...

  7. Investigating the Role of Extensin Proteins in Poplar Biomass Recalcitrance

    Energy Technology Data Exchange (ETDEWEB)

    Fleming, Margaret Brigham; Decker, Stephen R.; Bedinger, Patricia A.

    2016-04-13

    The biological conversion of cellulosic biomass to biofuel is hindered by cell wall recalcitrance, which can limit the ability of cellulases to access and break down cellulose. The purpose of this study was to investigate whether hydroxyproline-rich cell wall proteins (extensins) are present in poplar stem biomass, and whether these proteins may contribute to recalcitrance. Three classical extensin genes were identified in Populus trichocarpa through bioinformatic analysis of poplar genome sequences, with the following proposed names: PtEXTENSIN1 (Potri.001G019700); PtEXTENSIN2 (Potri.001G020100); PtEXTENSIN3 (Potri.018G050100). Tissue print immunoblots localized the extensin proteins in poplar stems to regions near the vascular cambium. Different thermochemical pretreatments reduced but did not eliminate hydroxyproline (Hyp, a proxy for extensins) from the biomass. Protease treatment of liquid hot water-pretreated poplar biomass reduced Hyp content by a further 16% and increased subsequent glucose yield by 20%. These data suggest that extensins may contribute to recalcitrance in pretreated poplar biomass, and that incorporating protease treatment into pretreatment protocols could result in a small but significant increase in the yield of fermentable glucose.

  8. Growing poplars for research with and without mycorrhizas

    Directory of Open Access Journals (Sweden)

    Anna eMüller

    2013-08-01

    Full Text Available During the last decades the importance of the genus Populus increased because the poplar genome has been sequenced and molecular tools for basic research are available. Furthermore, poplar species occur in different habitats and harbour large genetic variation, which can be exploited for economic applications and for increasing our knowledge on the basic molecular mechanisms of the woody life style. Poplars are, therefore, employed to unravel the molecular mechanisms of wood formation, stress tolerance, tree nutrition and interaction with other organisms such as pathogens or mycorrhiza. The basis of these investigations is the reproducible production of homogeneous plant material. In this method paper we describe techniques and growth conditions for the in vitro propagation of different poplar species (Populus × canescens, P. trichocarpa, P. tremula and P. euphratica and ectomycorrhizal fungi (Laccaria bicolor, Paxillus involutus as well as for their co-cultivation for ectomycorrhizal synthesis. Maintenance and plant preparation require different multiplication and rooting media. Growth systems to cultivate poplars under axenic conditions in agar and sand cultures with and without mycorrhizal fungi are described. Transfer of the plants from in vitro to in situ conditions is critical and hardening is important to prevent high mortality. Growth and vitality of the trees in vitro and outdoors with and without ectomycorrhizas are reported.

  9. Environmental Assessment: Demolish 452 at Grand Forks Air Force Base

    Science.gov (United States)

    2005-12-01

    Preserve” has been developed to restore a part of the native tallgrass prairie that once was dominant in this region. Plants thriving in this...native wildflower species. The Grand Forks AFB Natural Resources Manager installed a butterfly garden in the Prairie View Nature 32 Preserve in the...characterized as typical prairie potholes found within the northern plains ecoregion. 31 Wetlands on Grand Forks AFB occur frequently in drainage

  10. Proteome Analysis of Poplar Seed Vigor.

    Science.gov (United States)

    Zhang, Hong; Wang, Wei-Qing; Liu, Shu-Jun; Møller, Ian Max; Song, Song-Quan

    2015-01-01

    Seed vigor is a complex property that determines the seed's potential for rapid uniform emergence and subsequent growth. However, the mechanism for change in seed vigor is poorly understood. The seeds of poplar (Populus × Canadensis Moench), which are short-lived, were stored at 30 °C and 75 ± 5% relative humidity for different periods of time (0-90 days) to obtain different vigor seeds (from 95 to 0% germination). With decreasing seed vigor, the temperature range of seed germination became narrower; the respiration rate of the seeds decreased markedly, while the relative electrolyte leakage increased markedly, both levelling off after 45 days. A total of 81 protein spots showed a significant change in abundance (≥ 1.5-fold, P seeds with different vigor. Of the identified 65 proteins, most belonged to the groups involved in metabolism (23%), protein synthesis and destination (22%), energy (18%), cell defense and rescue (17%), and storage protein (15%). These proteins accounted for 95% of all the identified proteins. During seed aging, 53 and 6 identified proteins consistently increased and decreased in abundance, respectively, and they were associated with metabolism (22%), protein synthesis and destination (22%), energy (19%), cell defense and rescue (19%), storage proteins (15%), and cell growth and structure (3%). These data show that the decrease in seed vigor (aging) is an energy-dependent process, which requires protein synthesis and degradation as well as cellular defense and rescue.

  11. The growth process of natural poplar-birch forests

    Institute of Scientific and Technical Information of China (English)

    LAN Shibo; LUO Xu; LUO Yuliang

    2006-01-01

    With a combination of permanent and temporary sample plots,we investigated the growth conditions of natural poplar-birch forests.The forests were divided into four site classes,using statistical and analytical techniques in a quantitative model,in descending order where site class I was the best.On this basis,the growth of natural poplar-birch forests in the different site classes was studied.The growth processes of height and diameter at breast height were divided into three stages:a fast growing period,a stable growing period and a slow growing period.Results of this study provide a theoretical basis for the directive cultivation of natural poplar-birch forests.

  12. Co-pyrolysis of different type coals with hybrid poplar

    Energy Technology Data Exchange (ETDEWEB)

    Hanzade Haykiri-Acma; Serdar Yaman [Istanbul Technical University, Istanbul (Turkey). Dept. of Chemical Engineering

    2007-07-01

    The aim of this study is to investigate the co-pyrolysis characteristics of different rank coals such as peat, lignite, and anthracite in the presence of hybrid poplar. For this purpose, non-isothermal thermogravimetry technique was applied up to 900{sup o}C with a heating rate of 40{sup o}C/min under dynamic nitrogen flow of 40 mL/min. Hybrid poplar was added into each coal as much as 10 wt % of the coal sample and the experiments were repeated. Pyrolytic properties such as the char yields, gasification rates, and reactivity of the original samples and the blends were compared from the thermal analysis data, and interpreted. Addition of hybrid poplar to coal had some influences on the pyrolytic properties of coals that might be explained by the synergistic interaction approach. 15 refs., 3 figs., 4 tabs.

  13. Hydrothermal pretreatment conditions to enhance ethanol production from poplar biomass.

    Science.gov (United States)

    Negro, Maria José; Manzanares, Paloma; Ballesteros, Ignacio; Oliva, Jose Miguel; Cabañas, Araceli; Ballesteros, Mercedes

    2003-01-01

    Pretreatment has been recognized as a key step in enzyme-based conversion processes of lignocellulose biomass to ethanol. The aim of this study is to evaluate two hydrothermal pretreatments (steam explosion and liquid hot water) to enhance ethanol production from poplar (Populus nigra) biomass by a simultaneous saccharification and fermentation (SSF) process. The composition of liquid and solid fractions obtained after pretreatment, enzymatic digestibility, and ethanol production of poplar biomass pretreated at different experimental conditions was analyzed. The best results were obtained in steam explosion pretreatment at 210 C and 4 min, taking into account cellulose recovery above 95%, enzymatic hydrolysis yield of about 60%, SSF yield of 60% of theoretical, and 41% xylose recovery in the liquid fraction. Large particles can be used for poplar biomass in both pretreatments, since no significant effect of particle size on enzymatic hydrolysis and SSF was obtained.

  14. Stem taper equations for poplars growing on farmland in Sweden

    Institute of Scientific and Technical Information of China (English)

    Birger Hjelm

    2013-01-01

    We developed a simple polynomial taper equation for poplars growing on former farmland in Sweden and also evaluated the performance of some well-known taper equations.In Sweden there is an increasing interest in the use of poplar.Effective management of poplar plantations for high yield production would be facilitated by taper equations providing better predictions of stem volume than currently available equations.In the study a polynomial stem taper equation with five parameters was established for individual poplar trees growing on former farmland.The outputs of the polynomial taper equation were compared with five published equations.Data for fitting the equations were collected from 69 poplar trees growing at 37 stands in central and southern Sweden (lat.55-60° N).The mean age of the stands was 21 years (range 14-43),the mean density 984 stemsha-1 (198-3,493),and the mean diameter at breast height (outside bark) 25 cm (range 12-40).To verify the tested equations,performance of accuracy and precision diameter predictions at seven points along the stem was closely analyzed.Statistics used for evaluation of the equations indicated that the variable exponent taper equation presented by Kozak (1988) performed best and can be recommended.The stem taper equation by Kozak (1988) recommended in the study is likely to be beneficial for optimising the efficiency and profitability of poplar plantation management.The constructed polynomial equation and the segmented equation presented by Max & Burkhart (1976) were second and third ranked.Due to the statistical complexity of Kozak's equation,the constructed polynomial equation is alternatively recommended when a simple model is requested and larger bias is accepted.

  15. Sulfate Metabolites of 4-Monochlorobiphenyl in Whole Poplar Plants

    OpenAIRE

    Zhai, Guangshu; Lehmler, Hans-Joachim; Schnoor, Jerald L.

    2012-01-01

    4-Monochlorobiphenyl (PCB3) has been proven to be transformed into hydroxylated metabolites of PCB3 (OH-PCB3s) in whole poplar plants in our previous work. However, hydroxylated metabolites of PCBs, including OH-PCB3s, as the substrates of sulfotransferases have not been studied in many organisms including plants in vivo. Poplar (Populus deltoides × nigra, DN34) was used to investigate the further metabolism from OH-PCB3s to PCB3 sulfates because it is a model plant and one that is frequently...

  16. Effect of different biochars on Nitrogen uptake in poplar trees

    Science.gov (United States)

    George, Elizabeth; Tonon, Giustino; Scandellari, Francesca

    2014-05-01

    Influence of biochar on soil nitrogen transformation and plant uptake has been reported. This paper presents preliminary results of plant N uptake in poplars by using 15N isotope tracer approach Two types of biochar were applied to two sets of pots containing only sand and each pot received a pre-rooted poplar cutting. Half of the pots were inoculated with commercial mycorrhizal gel and the other half were left without. It is intended to provide information on how biochar, mycorrhiza and root interaction mediate nitrogen uptake and organ allocation.

  17. Molecular Dissection of Xylan Biosynthesis during Wood Formation in Poplar

    Institute of Scientific and Technical Information of China (English)

    Chanhui Lee; Quincy Teng; Ruiqin Zhong; Zheng-Hua Ye

    2011-01-01

    Xylan, being the second most abundant polysaccharide in dicot wood, is considered to be one of the factors contributing to wood biomass recalcitrance for biofuel production. To better utilize wood as biofuel feedstock, it is crucial to functionally characterize all the genes involved in xylan biosynthesis during wood formation. In this report, we inves-tigated roles of poplar families GT43 and GT8 glycosyltransferases in xylan biosynthesis during wood formation. There exist seven GT43 genes in the genome of poplar (Populus trichocarpa), five of which, namely PtrGT43A, PtrGT43B,PtrGT43C, PtrGT43D, and PtrGT43E, were shown to be highly expressed in the developing wood and their encoded proteins were localized in the Golgi. Comprehensive genetic complementation coupled with chemical analyses demonstrated that overexpression of PtrGT43A/B/E but not PtrGT43C/D was able to rescue the xylan defects conferred by the Arabidopsis irx9mutant, whereas overexpression of PtrGT43C/D but not PtrGT43A/B/E led to a complementation of the xyian defects in the Arabidopsis irx14 mutant. The essential roles of poplar GT43 members in xylan biosynthesis was further substantiated by RNAi down-regulation of GT43B in the hybrid poplar (Populus alba x tremula)leading to reductions in wall thickness and xylan content in wood, and an elevation in the abundance of the xylan reducing end sequence. Wood digestibility analysis revealed that cellulase digestion released more glucose from the wood of poplar GT43B RNAi lines than the control wood, indicating a decrease in wood biomass recalcitrance. Furthermore, RNAi down-regulation of another poplar wood-associated glycosyltransferase, PoGT8D, was shown to cause decreases in wall thickness and xylan content as well as in the abundance of the xylan reducing end sequence. Together, these findings demonstrate that the poplar GT43 mem-bers form two functionally non-redundant groups, namely PtrGT43A/B/E as functional orthologs of Arabidopsis IRX9 and Ptr

  18. Selection of black poplars for water use efficiency

    Directory of Open Access Journals (Sweden)

    Orlović Saša S.

    2002-01-01

    Full Text Available Photosynthesis, transpiration, water use efficiency (WUE and biomass production have been investigated in nine black poplar clones (section Aigeiros in three field experiments. Eastern cottonwood clones (Populus deltoides had the highest net photosynthesis and water use efficiency. European black poplar clones had the highest transpiration intensity. Correlation analysis showed that net photosynthesis was in a high positive correlation with biomass. Medium negative correlations existed between WUE and net photosynthesis, transpiration and biomass and WUE and biomass. The study showed a pronounced interclonal variability of the physiological and growth characters under study.

  19. Fascin, may the Forked be with you.

    Science.gov (United States)

    Okenve-Ramos, Pilar; Llimargas, Marta

    2014-01-01

    The FGFR pathway triggers a wide range of key biological responses. Among others, the Breathless (Btl, Drosophila FGFR1) receptor cascade promotes cell migration during embryonic tracheal system development. However, how the actin cytoskeleton responds to Btl pathway activation to induce cell migration has remained largely unclear. Our recent results shed light into this issue by unveiling a link between the actin-bundling protein Singed (Sn) and the Btl pathway. We showed that the Btl pathway regulates sn, which leads to the stabilization of the actin bundles required for filopodia formation and actin cytoskeleton rearrangement. This regulation contributes to tracheal migration, tracheal branch fusion and tracheal cell elongation. Parallel actin bundles (PABs) are usually cross-linked by more than one actin-bundling protein. Accordingly, we have also shown that sn synergistically interacts with forked (f), another actin crosslinker. In this Extra View we extend f analysis and hypothesize how both actin-bundling proteins may act together to regulate the PABs during tracheal embryonic development. Although both proteins are required for similar tracheal events, we suggest that Sn is essential for actin bundle initiation and stiffening, while F is required for the lengthening and further stabilization of the PABs.

  20. More forks on the road to replication stress recovery

    Institute of Scientific and Technical Information of China (English)

    Chris Allen; Amanda K. Ashley; Robert Hromas; Jac A. Nickoloff

    2011-01-01

    High-fidelity replication of DNA, and its accurate segregation to daughter cells, is critical for maintaining genome stability and suppressing cancer. DNA replication forks are stalled by many DNA lesions, activating checkpoint proteins that stabilize stalled forks.Stalled forks may eventually collapse, producing a broken DNA end. Fork restart is typically mediated by proteins initially identified by their rotes in homologous recombination repair of DNA double-strand breaks (DSBs). In recent years, several proteins involved in DSB repair by non-homologous end joining (NHEJ) have been implicated in the replication stress response, including DNA-PKcs, Ku,DNA Ligase IV-XRCC4, Artemis, XLF and Metnase. It is currently unclear whether NHEJ proteins are involved in the replication stress response through indirect (signaling) roles, and/or direct roles involving DNA end joining. Additional complexity in the replication stress response centers around RPA, which undergoes significant post-translational modification after stress, and RAD52, a conserved HR protein whose role in DSB repair may have shifted to another protein in higher eukaryotes, such as BRCA2, but retained its rote in fork restart. Most cancer therapeutic strategies create DNA reputation stress. Thus, it is imperative to gain a better understanding of replication stress response proteins and pathways to improve cancer therapy.

  1. Application of pre-emergence herbicides in poplar nursery production

    Institute of Scientific and Technical Information of China (English)

    Verica Vasic; Sasa Orlovic; Predrag Pap; Branislav Kovacevic; Milan Drekic; Leopold Poljakovic Pajnik; Zoran Galic

    2015-01-01

    In addition to pests and diseases, weeds are a major problem in poplar nursery production. The possibili-ties of herbicide application in juvenile poplar growth were researched, taking into account that weeds are one of the main limiting factors. The following pre-emergence herbi-cides were tested: acetochlor, S-metolachlor, metribuzin, oxifluorfen, and dimethenamid during two vegetation sea-sons at two locations, which differed by the soil physico-chemical characteristics. The study results show that the number of weeds on sample plots was significantly reduced by the tested herbicides when compared to control plots. The highest reduction in the number of weeds was achieved using the herbicides acetochlor and metribuzin. However, me-tribuzin showed a phytotoxic effect on sandy soil. Metribu-zin application is recommended only on the soils with higher contents of organic matter, where the phytotoxic effect was absent. Acetochlor, S-metolachlor, oxifluorfen, and dime-thenamid were not phytotoxic to poplars and can be used for weed suppression in the production of poplar plants.

  2. Economic investigations of short rotation intensively cultured hybrid poplars

    Science.gov (United States)

    David C. Lothner

    1983-01-01

    The history of the economic analyses is summarized for short rotation intensively cultured hybrid poplar at the North Central Forest Experiment Station. Early break-even analyses with limited data indicated that at a price of $25-30 per dry ton for fiber and low to medium production costs, several systems looked profitable. Later cash flow analyses indicated that two...

  3. Summer is the best time to thin hybrid poplar plantations

    Science.gov (United States)

    Harold F. Ford; Albert G., Jr. Snow

    1954-01-01

    Hybrid poplar plantations are established by planting dormant cuttings in close spacing, usually 4 x 4 feet. They are cultivated during the first growing season to eliminate competition from grasses and weeds. After the first year, the more vigorous trees effectively shade out lower vegetation. But rapid tree growth often makes thinning necessary after 2 or 3 growing...

  4. Transgenic manipulation of the metabolism of polyamines in poplar cells

    Science.gov (United States)

    Pratiksha Bhatnagar; Bernadette M. Glasheen; Suneet K. Bains; Stephanie L. Long; Rakesh Minocha; Christian Walter; Subhash C. Minocha

    2001-01-01

    The metabolism of polyamines (putrescine, spermidine, and spermine) has become the target of genetic manipulation because of their significance in plant development and possibly stress tolerance. We studied the polyamine metabolism in non-transgenic (NT) and transgenic cells of poplar (Populus nigra 3 maximowiczii) expressing a...

  5. Hydroponic screening of poplar for trace element tolerance and accumulation.

    Science.gov (United States)

    Migeon, Aude; Richaud, Pierre; Guinet, Frédéric; Blaudez, Damien; Chalot, Michel

    2012-04-01

    Using the nutrient film technique, we screened 21 clones of poplar for growth in the presence of a mix of trace elements (TE) and for TE accumulation capacities. Poplar cuttings were exposed for four weeks to a multipollution solution consisting in 10 microM Cd, Cu, Ni, and Pb, and 200 microM Zn. Plant biomass and TE accumulation patterns in leaves varied greatly between clones. The highest Cd and Zn concentrations in leaves were detected in P. trichocarpa and P. trichocarpa hybrids, with the clone Skado (P. trichocarpa x P. maximowiczii) accumulating up to 108 mg Cd kg(-1) DW and 1510 mg Zn kg(-1) DW when exposed to a multipollution context. Our data also confirm the importance of pH and multipollution, as these factors greatly affect TE accumulation in above ground biomass. The NFT technique applied here to a large range of poplar clones also revealed the potential of the Rochester, AFO662 and AFO678 poplar clones for use in phytostabilization programs and bioenergy production, where production of less contaminated above ground biomass is suitable.

  6. OK - Establishing a mussel monitoring program to evaluate point-source discharges into Deep Fork NWR

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — A study incorporating several investigative methods was conducted at the Deep Fork River, Okmulgee, Oklahoma in and near the Deep Fork National Wildlife Refuge. The...

  7. A Multi-Fork Z-Axis Quartz Micromachined Gyroscope

    Directory of Open Access Journals (Sweden)

    Aiying Yang

    2013-09-01

    Full Text Available A novel multi-fork z-axis gyroscope is presented in this paper. Different from traditional quartz gyroscopes, the lateral electrodes of the sense beam can be arranged in simple patterns; as a result, the fabrication is simplified. High sensitivity is achieved by the multi-fork design. The working principles are introduced, while the finite element method (FEM is used to simulate the modal and sensitivity. A quartz fork is fabricated, and a prototype is assembled. Impedance testing shows that the drive frequency and sense frequency are similar to the simulations, and the quality factor is approximately 10,000 in air. The scale factor is measured to be 18.134 mV/(°/s and the nonlinearity is 0.40% in a full-scale input range of ±250 °/s.

  8. New histone supply regulates replication fork speed and PCNA unloading

    DEFF Research Database (Denmark)

    Mejlvang, Jakob; Feng, Yunpeng; Alabert, Constance;

    2014-01-01

    Correct duplication of DNA sequence and its organization into chromatin is central to genome function and stability. However, it remains unclear how cells coordinate DNA synthesis with provision of new histones for chromatin assembly to ensure chromosomal stability. In this paper, we show...... that replication fork speed is dependent on new histone supply and efficient nucleosome assembly. Inhibition of canonical histone biosynthesis impaired replication fork progression and reduced nucleosome occupancy on newly synthesized DNA. Replication forks initially remained stable without activation...... of conventional checkpoints, although prolonged histone deficiency generated DNA damage. PCNA accumulated on newly synthesized DNA in cells lacking new histones, possibly to maintain opportunity for CAF-1 recruitment and nucleosome assembly. Consistent with this, in vitro and in vivo analysis showed that PCNA...

  9. A multi-fork z-axis quartz micromachined gyroscope.

    Science.gov (United States)

    Feng, Lihui; Zhao, Ke; Sun, Yunan; Cui, Jianmin; Cui, Fang; Yang, Aiying

    2013-01-01

    A novel multi-fork z-axis gyroscope is presented in this paper. Different from traditional quartz gyroscopes, the lateral electrodes of the sense beam can be arranged in simple patterns; as a result, the fabrication is simplified. High sensitivity is achieved by the multi-fork design. The working principles are introduced, while the finite element method (FEM) is used to simulate the modal and sensitivity. A quartz fork is fabricated, and a prototype is assembled. Impedance testing shows that the drive frequency and sense frequency are similar to the simulations, and the quality factor is approximately 10,000 in air. The scale factor is measured to be 18.134 mV/(°/s) and the nonlinearity is 0.40% in a full-scale input range of ±250 °/s.

  10. Geometric Metasurface Fork Gratings for Vortex Beam Generation and Manipulation

    CERN Document Server

    Chen, Shumei; Li, Guixin; Zhang, Shuang; Cheah, Kok Wai

    2016-01-01

    In recent years, optical vortex beams possessing orbital angular momentum have caught much attention due to their potential for high capacity optical communications. This capability arises from the unbounded topological charges of orbital angular momentum (OAM) that provides infinite freedoms for encoding information. The two most common approaches for generating vortex beams are through fork diffraction gratings and spiral phase plates. While realization of conventional spiral phase plate requires complicated 3D fabrication, the emerging field of metasurfaces has provided a planar and facile solution for generating vortex beams of arbitrary orbit angular momentum. Here we realize a novel type of geometric metasurface fork grating that seamlessly combine the functionality of a metasurface phase plate for vortex beam generation, and that of a linear phase gradient metasurface for controlling the wave propagation direction. The metasurface fork grating is therefore capable of simultaneously controlling both the...

  11. Investment appraisal of a poplar plantation aged 42 years

    Directory of Open Access Journals (Sweden)

    Keča Ljiljana

    2013-01-01

    Full Text Available Commercial profitability of poplar cultivation was analyzed in an artificial poplar plantation in Serbia. The aim of this study was to validate the invested financial means in the artificial poplar plantation, on the basis of the analysis of costs and receipts during a 42-year rotation, on alluvial semigley, at a discount rate of 12%. Methods of dynamic investment calculation (net present value - NPV, internal rate of return - IRR, benefit-cost method - B/C and payback period - PBP were used. The investigated plantations were established from Populus x euramericana cl. I-214, with a planting spacing of 6 x 3 m. At the calculation discount rate of 12%, the project for the production cycle of 42 years was not cost-effective from the economic aspect. The discount rate of 6% can be accepted in the studied plot because of the better site (alluvial semigley, but the oldness of the stand is unfavourable. For the studied sample plot, IRR was 5.51 %. B/C at r=12% in the study compartment was 0.24. The analysis shows that PBP is practically unacceptable for the investor at the discount rate of 6%. In practice, it is necessary to improve the position of producers in getting financial means for investment in poplar cultivation, so as to stimulate the establishment of artificial poplar plantations, especially in the private sector (on private land. [Projekat Ministarstva nauke Republike Srbije, br. TR 37008, TR 31041 and Value chain of non-wood forest products and its role in development of forestry sector in Serbia

  12. Geothermal Space Heating Applications for the Fort Peck Indian Reservation in the Vicinity of Poplar, Montana. Phase I Report, August 20, 1979--December 31, 1979

    Energy Technology Data Exchange (ETDEWEB)

    Spencer, Glenn J.; Cohen, M. Jane

    1980-01-04

    aquifer. While beneficial uses may be found for these geothermal fluids, even higher temperatures (in excess of 260 F) may be found directly beneath the town of Poplar and the new residential development which is being planned in the area. This project is primarily concerned with the use of geothermal energy for space heating and domestic hot water for the town of Poplar (Figure 2 and Photograph 1) and a new residential development of 250 homes which is planned for an area approximately 4 miles east of Poplar along U.S. Route 2 (Figure 2 and Photograph 2). A number of alternative engineering design approaches have been evaluated, and the cost of these systems has been compared to existing and expected heating costs.

  13. Isoprene emission-free poplars--a chance to reduce the impact from poplar plantations on the atmosphere.

    Science.gov (United States)

    Behnke, Katja; Grote, Rüdiger; Brüggemann, Nicolas; Zimmer, Ina; Zhou, Guanwu; Elobeid, Mudawi; Janz, Dennis; Polle, Andrea; Schnitzler, Jörg-Peter

    2012-04-01

    • Depending on the atmospheric composition, isoprene emissions from plants can have a severe impact on air quality and regional climate. For the plant itself, isoprene can enhance stress tolerance and also interfere with the attraction of herbivores and parasitoids. • Here, we tested the growth performance and fitness of Populus × canescens in which isoprene emission had been knocked down by RNA interference technology (PcISPS-RNAi plants) for two growing seasons under outdoor conditions. • Neither the growth nor biomass yield of the PcISPS-RNAi poplars was impaired, and they were even temporarily enhanced compared with control poplars. Modelling of the annual carbon balances revealed a reduced carbon loss of 2.2% of the total gross primary production by the absence of isoprene emission, and a 6.9% enhanced net growth of PcISPS-RNAi poplars. However, the knock down in isoprene emission resulted in reduced susceptibility to fungal infection, whereas the attractiveness for herbivores was enhanced. • The present study promises potential for the use of non- or low-isoprene-emitting poplars for more sustainable and environmentally friendly biomass production, as reducing isoprene emission will presumably have positive effects on regional climate and air quality. © 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.

  14. Conservation status of white poplar (Populus alba L. and black poplar (Populus nigra L. in the territory of Great War Island

    Directory of Open Access Journals (Sweden)

    Šijačić-Nikolić Mirjana

    2014-01-01

    Full Text Available T he paper describes t he conservation status of white poplar (Populus alba L. and black poplar (Populus nigra L. in the territory of Great War Island. The activities of in situ and ex situ gene pool conservation have been defined in order to preserve and expand the populations of the above species, as carriers of complex wetland forest ecosystems.

  15. Elm Fork of the Trinity River Floodplain Management Study

    OpenAIRE

    Tickle, Greg; Clary, Melinda

    2001-01-01

    Wendy Lopez and Associates, Inc. (WLA) was asked to provide a conservation and ecological restoration overview for the City of Dallas as part of an Elm Fork Floodplain Management Study. This study encompasses a unique portion of the main stem of the Elm Fork of the Trinity River, Dallas County, Dallas, Texas. The project area includes approximately 8.5 square miles, half of which lie within a 100-year floodplain. Approximately 15% of the project area is mature bottomland hardwood forest and s...

  16. Replication Termination: Containing Fork Fusion-Mediated Pathologies in Escherichia coli

    Directory of Open Access Journals (Sweden)

    Juachi U. Dimude

    2016-07-01

    Full Text Available Duplication of bacterial chromosomes is initiated via the assembly of two replication forks at a single defined origin. Forks proceed bi-directionally until they fuse in a specialised termination area opposite the origin. This area is flanked by polar replication fork pause sites that allow forks to enter but not to leave. The precise function of this replication fork trap has remained enigmatic, as no obvious phenotypes have been associated with its inactivation. However, the fork trap becomes a serious problem to cells if the second fork is stalled at an impediment, as replication cannot be completed, suggesting that a significant evolutionary advantage for maintaining this chromosomal arrangement must exist. Recently, we demonstrated that head-on fusion of replication forks can trigger over-replication of the chromosome. This over-replication is normally prevented by a number of proteins including RecG helicase and 3’ exonucleases. However, even in the absence of these proteins it can be safely contained within the replication fork trap, highlighting that multiple systems might be involved in coordinating replication fork fusions. Here, we discuss whether considering the problems associated with head-on replication fork fusion events helps us to better understand the important role of the replication fork trap in cellular metabolism.

  17. Forked and Integrated Variants In An Open-Source Firmware Project

    DEFF Research Database (Denmark)

    Stanciulescu, Stefan; Schulze, Sandro; Wasowski, Andrzej

    2015-01-01

    and interactive source management platforms such as Github. We study advantages and disadvantages of forking using the case of Marlin, an open source firmware for 3D printers. We find that many problems and advantages of cloning do translate to forking. Interestingly, the Marlin community uses both forking...

  18. Relationship between trophic component of different poplar strains and occurrence of Saperda poplnea

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    An experimental area of poplar was established in Songyuan of Jilin Province in 1999 for testing the resistance of different poplar stains to Saperda poplnea. Incidence of S. poplnea on ten poplar strains were investigated, and the main trophic component of branches of these poplar trees were measured and analyzed in April 2001. The results showed that there existed significant difference in population size of S. poplnea on different poplar strains, and the branches of these poplar strains have significant difference in nutrient component and content of amino acids. The population size of this pest had a significantly posi-tive correlation with dissolvable total sugar and water content but had no significant correlation with content of total nitrogen and protein nitrogen.

  19. 杨树人工林边缘效应的初步研究%Preliminary Study on Edge Effects for Poplar Plantation

    Institute of Scientific and Technical Information of China (English)

    吴生广

    2013-01-01

      The influences of edge effects within different directions on different places on growth of poplar in Liaoyang Region were studied .The result shows that :in three plots of 12-year-old Populus liaoningensis ,9-year-old Popu-lus × euramericana cv .N3930 ,8-year-old Populus × euramericana cv .N3930 ,depth of the edge in east direction are all maximum ;the edge effect is also shown by the largest ,followed by northern direction .In practice ,increas-ing the poplar trees in the eastern direction not only can increase the proportion of poplar in eastern edge of the woods in the entire forest ,but also can significantly improve biomass production & economic benefits of the poplar .%  通过辽阳地区不同杨树林地不同方向上的边缘效应对杨树生长影响的研究,结果表明:在12年生辽宁杨、9年生3930杨和8年生3930杨3个样地中,皆以东部方向上的边缘深度最大,表现出的边缘效应亦最大,北部方向次之。实践中,可通过增加东部方向上杨树的株数,使杨树林东部边缘部分在整个林子中的比例增大,可显著提高杨树的生物产量和经济效益。

  20. Environmental Statement for Lavon Dam and Reservoir Modification and East Fork Channel Improvement - Pertaining to East Fork Channel and Levee Improvement Increment I. Supplement.

    Science.gov (United States)

    1977-01-01

    in the vicinity of CountyRoad 3039. 2.15 Wildlife. In areas where the channel is ill defined, herons, egrets, ducks, nutria , and beaver find excellent...longer provide habitat for egrets, migratory waterfowl, and shorebirds, or for aquatic mammals such as beaver and nutria . 4.18 Impacts on the aquatic... nutria and beaver. Alteration of the hydrologic regime could cause these species to become permanently displaced, and some individuals may perish as

  1. Tianjin,Full of Fork Art

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    @@ Tianjin is one of the four municipalities in China.Its name means"the place where the emperor crossed the river".Its urban area is the third largest in China,after Shanghai and Beijing.Tianjin's urban area is located along the Hai He River.Its ports,some distance away,are located on Bohai Gulf in the Pacific Ocean.Tianjin Municipality borders Hebei province to the north,south,and west;the municipality of Beijing is to the northwest,and Bohai Gulf to the east.

  2. The carpenter fork bed, a new - and older - Black-shale unit at the base of the New Albany shale in central Kentucky: Characterization and significance

    Science.gov (United States)

    Barnett, S.F.; Ettensohn, F.R.; Norby, R.D.

    1996-01-01

    Black shales previously interpreted to be Late Devonian cave-fill or slide deposits are shown to be much older Middle Devonian black shales only preserved locally in Middle Devonian grabens and structural lows in central Kentucky. This newly recognized - and older -black-shale unit occurs at the base of the New Albany Shale and is named the Carpenter Fork Bed of the Portwood Member of the New Albany Shale after its only known exposure on Carpenter Fork in Boyle County, central Kentucky; two other occurrences are known from core holes in east-central Kentucky. Based on stratigraphic position and conodont biostratigraphy, the unit is Middle Devonian (Givetian: probably Middle to Upper P. varcus Zone) in age and occurs at a position represented by an unconformity atop the Middle Devonian Boyle Dolostone and its equivalents elsewhere on the outcrop belt. Based on its presence as isolated clasts in the overlying Duffin Bed of the Portwood Member, the former distribution of the unit was probably much more widespread - perhaps occurring throughout western parts of the Rome trough. Carpenter Fork black shales apparently represent an episode of subsidence or sea-level rise coincident with inception of the third tectophase of the Acadian orogeny. Deposition, however, was soon interrupted by reactivation of several fault zones in central Kentucky, perhaps in response to bulge migration accompanying start of the tectophase. As a result, much of central Kentucky was uplifted and tilted, and the Carpenter Fork Bed was largely eroded from the top of the Boyle, except in a few structural lows like the Carpenter Fork graben where a nearly complete record of Middle to early Late Devonian deposition is preserved.

  3. Genome Enabled Discovery of Carbon Sequestration Genes in Poplar

    Energy Technology Data Exchange (ETDEWEB)

    Filichkin, Sergei; Etherington, Elizabeth; Ma, Caiping; Strauss, Steve

    2007-02-22

    The goals of the S.H. Strauss laboratory portion of 'Genome-enabled discovery of carbon sequestration genes in poplar' are (1) to explore the functions of candidate genes using Populus transformation by inserting genes provided by Oakridge National Laboratory (ORNL) and the University of Florida (UF) into poplar; (2) to expand the poplar transformation toolkit by developing transformation methods for important genotypes; and (3) to allow induced expression, and efficient gene suppression, in roots and other tissues. As part of the transformation improvement effort, OSU developed transformation protocols for Populus trichocarpa 'Nisqually-1' clone and an early flowering P. alba clone, 6K10. Complete descriptions of the transformation systems were published (Ma et. al. 2004, Meilan et. al 2004). Twenty-one 'Nisqually-1' and 622 6K10 transgenic plants were generated. To identify root predominant promoters, a set of three promoters were tested for their tissue-specific expression patterns in poplar and in Arabidopsis as a model system. A novel gene, ET304, was identified by analyzing a collection of poplar enhancer trap lines generated at OSU (Filichkin et. al 2006a, 2006b). Other promoters include the pGgMT1 root-predominant promoter from Casuarina glauca and the pAtPIN2 promoter from Arabidopsis root specific PIN2 gene. OSU tested two induction systems, alcohol- and estrogen-inducible, in multiple poplar transgenics. Ethanol proved to be the more efficient when tested in tissue culture and greenhouse conditions. Two estrogen-inducible systems were evaluated in transgenic Populus, neither of which functioned reliably in tissue culture conditions. GATEWAY-compatible plant binary vectors were designed to compare the silencing efficiency of homologous (direct) RNAi vs. heterologous (transitive) RNAi inverted repeats. A set of genes was targeted for post transcriptional silencing in the model Arabidopsis system; these include the floral

  4. An Empirical Assessment of Transgene Flow from a Bt Transgenic Poplar Plantation.

    Science.gov (United States)

    Hu, Jianjun; Zhang, Jin; Chen, Xingling; Lv, Jinhui; Jia, Huixia; Zhao, Shutang; Lu, Mengzhu

    2017-01-01

    To assess the possible impact of transgenic poplar plantations on the ecosystem, we analyzed the frequency and distance of gene flow from a mature male transgenic Populus nigra plantation carrying the Bacillus thuringiensis toxin gene (Bt poplar) and the survival of Bt poplar seeds. The resultant Bt poplar seeds occurred at a frequency of ~0.15% at 0 m to ~0.02% at 500 m from the Bt poplar plantation. The germination of Bt poplar seeds diminished within three weeks in the field (germination rate from 68% to 0%) compared to 48% after three weeks of storage at 4°C. The survival rate of seedlings in the field was 0% without any treatment but increased to 1.7% under the addition of four treatments (cleaning and trimming, watering, weeding, and covering with plastic film to maintain moisture) after being seeded in the field for eight weeks. The results of this study indicate that gene flow originating from the Bt poplar plantation occurred at an extremely low level through pollen or seeds under natural conditions. This study provides first-hand field data on the extent of transgene flow in poplar plantations and offers guidance for the risk assessment of transgenic poplar plantations.

  5. The arbuscular mycorrhizal status of poplar clones selected for phytoremediation of soils contaminated with heavy metals

    Energy Technology Data Exchange (ETDEWEB)

    Takacs, T.; Radimszky, L.; Nemeth, T. [Research Inst. for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences, Budapest (Hungary)

    2005-04-01

    The aim of this work was to study the colonization of indigenous arbuscular mycorrhizal fungi (AMF) species in fine-roots of poplar clones. Roots of 7 poplar clones were sampled from a 1-year-old trial established at an industrial site strongly polluted with heavy metals at Balatonfuezfoe, Hungary. The poplar clones have shown variable degrees of colonization by AMF, suggesting differential host susceptibility or mycorrhizal dependency. After outplanting the percentage of poplar survival was strongly correlated with the frequency of AMF infection. Two clones that survived at the lowest ratio after outplanting had not been colonized by AMF in contrast to those which survived to a much higher extent. (orig.)

  6. Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1

    Science.gov (United States)

    Adams, Joshua P.; Adeli, Ardeshir; Hsu, Chuan-Yu; Harkess, Richard L.; Page, Grier P.; dePamphilis, Claude W.; Schultz, Emily B.; Yuceer, Cetin

    2011-01-01

    Perennial woody species, such as poplar (Populus spp.) must acquire necessary heavy metals like zinc (Zn) while avoiding potential toxicity. Poplar contains genes with sequence homology to genes HMA4 and PCS1 from other species which are involved in heavy metal regulation. While basic genomic conservation exists, poplar does not have a hyperaccumulating phenotype. Poplar has a common indicator phenotype in which heavy metal accumulation is proportional to environmental concentrations but excesses are prevented. Phenotype is partly affected by regulation of HMA4 and PCS1 transcriptional abundance. Wild-type poplar down-regulates several transcripts in its Zn-interacting pathway at high Zn levels. Also, overexpressed PtHMA4 and PtPCS1 genes result in varying Zn phenotypes in poplar; specifically, there is a doubling of Zn accumulation in leaf tissues in an overexpressed PtPCS1 line. The genomic complement and regulation of poplar highlighted in this study supports a role of HMA4 and PCS1 in Zn regulation dictating its phenotype. These genes can be altered in poplar to change its interaction with Zn. However, other poplar genes in the surrounding pathway may maintain the phenotype by inhibiting drastic changes in heavy metal accumulation with a single gene transformation. PMID:21504875

  7. Ten Things You Should Do with a Tuning Fork

    Science.gov (United States)

    Lincoln, James

    2013-01-01

    Tuning forks are wonderful tools for teaching physics. Every physics classroom should have several and every physics student should be taught how to use them. In this article, I highlight 10 enriching demonstrations that most teachers might not know, as well as provide tips to enhance the demonstrations teachers might already be doing. Some of…

  8. Accurate aging of juvenile salmonids using fork lengths

    Science.gov (United States)

    Sethi, Suresh; Gerken, Jonathon; Ashline, Joshua

    2017-01-01

    Juvenile salmon life history strategies, survival, and habitat interactions may vary by age cohort. However, aging individual juvenile fish using scale reading is time consuming and can be error prone. Fork length data are routinely measured while sampling juvenile salmonids. We explore the performance of aging juvenile fish based solely on fork length data, using finite Gaussian mixture models to describe multimodal size distributions and estimate optimal age-discriminating length thresholds. Fork length-based ages are compared against a validation set of juvenile coho salmon, Oncorynchus kisutch, aged by scales. Results for juvenile coho salmon indicate greater than 95% accuracy can be achieved by aging fish using length thresholds estimated from mixture models. Highest accuracy is achieved when aged fish are compared to length thresholds generated from samples from the same drainage, time of year, and habitat type (lentic versus lotic), although relatively high aging accuracy can still be achieved when thresholds are extrapolated to fish from populations in different years or drainages. Fork length-based aging thresholds are applicable for taxa for which multiple age cohorts coexist sympatrically. Where applicable, the method of aging individual fish is relatively quick to implement and can avoid ager interpretation bias common in scale-based aging.

  9. Comparative Study of Transcriptome Profiles of Mouse Livers and Skins Infected by Fork-Tailed or Non-Fork-Tailed Schistosoma japonicum

    Directory of Open Access Journals (Sweden)

    Yan Yang

    2017-08-01

    Full Text Available Schistosoma japonicum (S. japonicum is a worldwide spread pathogen which penetrates host skin and then induces several diseases in infected host, such as fibrosis, formation of granulomas, hepatocirrhosis, and hepatomegaly. In present study, for the first time, transcriptomic profiles of mouse livers and skins infected by fork-tailed S. japonicum cercaria or non-fork-tailed S. japonicum cercaria were analyzed by using RNA-seq. The present findings demonstrated that transcriptomic landscapes of livers and skins infected by fork-tailed S. japonicum cercaria or non-fork-tailed S. japonicum cercaria were different. S. japonicum has great influence on hepatic metabolic processes. Fork-tailed S. japonicum cercaria upregulated hepatic metabolic processes, while non-fork-tailed S. japonicum cercaria downregulated hepatic metabolic processes. For the metabolism process or the metabolism enzyme expressional change, the pharmacokinetics of host could be changed during S. japonicum infection, regardless the biotypes of S. japonicum cercariae. The changes of infected skins focused on upregulation of immune response. During the S. japonicum skin infection period, fork-tailed S. japonicum cercaria infection induced stronger immune response comparing with that immune response triggered by non-fork-tailed S. japonicum cercaria. The transcription factor enrichment analysis showed that Irf7, Stat1 and Stat2 could play important roles in gene regulation during fork-tailed S. japonicum cercaria infection.

  10. Fork rotation and DNA precatenation are restricted during DNA replication to prevent chromosomal instability.

    Science.gov (United States)

    Schalbetter, Stephanie A; Mansoubi, Sahar; Chambers, Anna L; Downs, Jessica A; Baxter, Jonathan

    2015-08-18

    Faithful genome duplication and inheritance require the complete resolution of all intertwines within the parental DNA duplex. This is achieved by topoisomerase action ahead of the replication fork or by fork rotation and subsequent resolution of the DNA precatenation formed. Although fork rotation predominates at replication termination, in vitro studies have suggested that it also occurs frequently during elongation. However, the factors that influence fork rotation and how rotation and precatenation may influence other replication-associated processes are unknown. Here we analyze the causes and consequences of fork rotation in budding yeast. We find that fork rotation and precatenation preferentially occur in contexts that inhibit topoisomerase action ahead of the fork, including stable protein-DNA fragile sites and termination. However, generally, fork rotation and precatenation are actively inhibited by Timeless/Tof1 and Tipin/Csm3. In the absence of Tof1/Timeless, excessive fork rotation and precatenation cause extensive DNA damage following DNA replication. With Tof1, damage related to precatenation is focused on the fragile protein-DNA sites where fork rotation is induced. We conclude that although fork rotation and precatenation facilitate unwinding in hard-to-replicate contexts, they intrinsically disrupt normal chromosome duplication and are therefore restricted by Timeless/Tipin.

  11. Termination of DNA replication forks: "Breaking up is hard to do".

    Science.gov (United States)

    Bailey, Rachael; Priego Moreno, Sara; Gambus, Agnieszka

    2015-01-01

    To ensure duplication of the entire genome, eukaryotic DNA replication initiates from thousands of replication origins. The replication forks move through the chromatin until they encounter forks from neighboring origins. During replication fork termination forks converge, the replisomes disassemble and topoisomerase II resolves the daughter DNA molecules. If not resolved efficiently, terminating forks result in genomic instability through the formation of pathogenic structures. Our recent findings shed light onto the mechanism of replisome disassembly upon replication fork termination. We have shown that termination-specific polyubiquitylation of the replicative helicase component - Mcm7, leads to dissolution of the active helicase in a process dependent on the p97/VCP/Cdc48 segregase. The inhibition of terminating helicase disassembly resulted in a replication termination defect. In this extended view we present hypothetical models of replication fork termination and discuss remaining and emerging questions in the DNA replication termination field.

  12. Response of transgenic poplar overexpressing cytosolic glutamine synthetase to phosphinothricin.

    Science.gov (United States)

    Pascual, María Belén; Jing, Zhong Ping; Kirby, Edward G; Cánovas, Francisco M; Gallardo, Fernando

    2008-01-01

    Glutamine synthetase (GS) is the main enzyme involved in ammonia assimilation in plants and is the target of phosphinothricin (PPT), an herbicide commonly used for weed control in agriculture. As a result of the inhibition of GS, PPT also blocks photorespiration, resulting in the depletion of leaf amino acid pools leading to the plant death. Hybrid transgenic poplar (Populus tremula x P. alba INRA clone 7171-B4) overexpressing cytosolic GS is characterized by enhanced vegetative growth [Gallardo, F., Fu, J., Cantón, F.R., García-Gutiérrez, A., Cánovas, F.M., Kirby, E.G., 1999. Expression of a conifer glutamine synthetase gene in transgenic poplar. Planta 210, 19-26; Fu, J., Sampalo, R., Gallardo, F., Cánovas, F.M., Kirby, E.G., 2003. Assembly of a cytosolic pine glutamine synthetase holoenzyme in leaves of transgenic poplar leads to enhanced vegetative growth in young plants. Plant Cell Environ. 26, 411-418; Jing, Z.P., Gallardo, F., Pascual, M.B., Sampalo, R., Romero, J., Torres de Navarra, A., Cánovas, F.M., 2004. Improved growth in a field trial of transgenic hybrid poplar overexpressing glutamine synthetase. New Phytol. 164, 137-145], increased photosynthetic and photorespiratory capacities [El-Khatib, R.T., Hamerlynck, E.P., Gallardo, F., Kirby, E.G., 2004. Transgenic poplar characterized by ectopic expression of a pine cytosolic glutamine synthetase gene exhibits enhanced tolerance to water stress. Tree Physiol. 24, 729-736], enhanced tolerance to water stress (El-Khatib et al., 2004), and enhanced nitrogen use efficiency [Man, H.-M., Boriel, R., El-Khatib, R.T., Kirby, E.G., 2005. Characterization of transgenic poplar with ectopic expression of pine cytosolic glutamine synthetase under conditions of varying nitrogen availability. New Phytol. 167, 31-39]. In vitro plantlets of GS transgenic poplar exhibited enhanced resistance to PPT when compared with non-transgenic controls. After 30 days exposure to PPT at an equivalent dose of 275 g ha(-1), growth

  13. Cadmium phytoextraction potential of poplar clones (Populus spp.)

    Energy Technology Data Exchange (ETDEWEB)

    Pilipovic, A.; Orlovic, S.; Petrovic, N. [Faculty of Agriculture, Inst. of Lowland Forestry and Environment, Novi Sad (Czechoslovakia); Nikolic, N.; Krstic, B. [Faculty of Natural Sciences, Dept. of Biology and Ecology, Novi Sad (Czechoslovakia)

    2005-04-01

    Biomass production, leaf number and area, photosynthetic and dark respiration rates, leaf concentration of photosynthetic pigments, nitrate reductase activity, as well as cadmium concentrations in leaves, stem, and roots were measured in poplar clones PE 4/68, B-229, 665, and 45/51. Plants were grown hydroponically under controlled conditions and treated with two different cadmium (Cd) concentrations (10{sup -5} and 10{sup -7} M) in the same background solution (Hoagland's solution). The presence of Cd did not cause serious disturbance of growth and physiological parameters in the studied poplar clones. Cd concentrations in plant tissues reflected external concentrations. In treated plants, root contents increased from 38.57 to 511.51 ppm, leaf contents from 0.91 to 7.50, while stem contents ranged from 1.37 to 9.50 ppm. (orig.)

  14. Nitrogen ion utilization by tulip poplar (Liriodendron tulipifera L. ) seedlings

    Energy Technology Data Exchange (ETDEWEB)

    Mann, L.K.

    1982-01-01

    Growth responses of one-year-old tulip poplar seedlings were determined for different nitrogen sources (HN/sub 4/NO/sub 3/, NH+/sub 4/, NO-/sub 3/, no nitrogen) at 336 ppm N in nutrient culture. At the end of three months, there were no significant differences in growth observed among treatments in terms of stem elongation, leaf area, and leaf size. After four months, however, seedlings of the NH/sub 4/NO/sub 3/ treatment exhibited significantly (P<0.05) greater growth (final weight gain and stem elongation) than all other nitrogen sorces. Growth was slightly less for the NO-/sub 3/ treatment plants, but compared with NH+/sub 4/ and no nitrogen treatment, both NH/sub 4/NO/sub 3/ and NO-/sub 3/ treatments exhibited significantly greater growth responses. NO-/sub 3/ is recommended as the sole nitrogen source, especially for small seedlings of tulip poplar.

  15. Hydrologic Evaluation of a Humid Climate Poplar Phytoremediation Barrier

    Science.gov (United States)

    Swensen, K.; Rabideau, A. J.

    2016-12-01

    The emplacement of hybrid poplar trees to function as phytoremediation barriers is an appealing and sustainable groundwater management strategy because of low maintenance costs and the potential to extract large amounts of groundwater without pumping. While the effectiveness of poplar barriers has been assessed by groundwater quality monitoring, less attention has been given to physical hydrologic evaluations needed to improve barrier designs. In this research, a five year hydrologic evaluation was conducted at a poplar phytoremediation site in western NY, with the goal of quantifying ETg (evapotranspiration from groundwater) as a measure of the barrier's effectiveness in a humid climate. To consider transpiration from both vadose zone and groundwater, the hydrologic evaluation included four components: physical ET measurements, theoretical ET calculations, analysis of diurnal groundwater table fluctuations, and vadose zone modeling. The direct measurements of ETT (total) were obtained using sap flow meters installed on multiple trees within the barrier. These data were interpreted using a regression model that included theoretical ET calculations and site-specific measurements of weather parameters and poplar trunk area. Application of this model was challenged by the spatial variation in rooting depth as determined by tree excavations. To further quantify the removal of groundwater by the phytobarrier (ETg), the White Method was applied to interpret diurnal groundwater fluctuations from monitoring wells located within the barrier, in conjunction with a variably saturated-saturated flow model configured to confirm water extraction from ETg. Taken together, the results of this five year hydrologic evaluation highlight the complexity in quantifying humid climate groundwater extraction, as a large number of variables were found to influence these rates. Improved understanding of these controls will contribute to improved barrier designs that maximize ETg.

  16. Heat transfer mechanisms in poplar wood undergoing torrefaction

    Science.gov (United States)

    Sule, Idris O.; Mahmud, Shohel; Dutta, Animesh; Tasnim, Syeda Humaira

    2016-03-01

    Torrefaction, a thermal treatment process of biomass, has been proved to improve biomass combustible properties. Torrefaction is defined as a thermochemical process in reduced oxygen condition and at temperature range from 200 to 300 °C for shorter residence time whereby energy yield is maximized, can be a bridging technology that can lead the conventional system (e.g. coal-fired plants) towards a sustainable energy system. In efforts to develop a commercial operable torrefaction reactor, the present study examines the minimum input condition at which biomass is torrefied and explores the heat transfer mechanisms during torrefaction in poplar wood samples. The heat transfer through the wood sample is numerically modeled and analyzed. Each poplar wood is torrefied at temperature of 250, 270, and 300 °C. The experimental study shows that the 270 °C-treatment can be deduced as the optimal input condition for torrefaction of poplar wood. A good understanding of heat transfer mechanisms can facilitate the upscaling and downscaling of torrefaction process equipment to fit the feedstock input criteria and can help to develop treatment input specifications that can maximize process efficiency.

  17. An efficient Agrobacterium-mediated transformation system for poplar.

    Science.gov (United States)

    Movahedi, Ali; Zhang, Jiaxin; Amirian, Rasoul; Zhuge, Qiang

    2014-06-13

    Poplar is a model system for the regeneration and genetic transformation of woody plants. To shorten the time required for studies of transgenic poplar, efforts have been made to optimize transformation methods that use Agrobacterium tumefaciens. In this study, an Agrobacterium infective suspension was treated at 4 °C for at least 10 h before infecting explants. By transforming the Populus hybrid clone "Nanlin895" (Populus deltoides×P. euramericana) with Agrobacterium harboring the PBI121:CarNAC6 binary vector, we showed that the transformation efficiency was improved significantly by multiple independent factors, including an Agrobacterium infective suspension with an OD600 of 0.7, an Agrobacterium infection for 120 min, an Agrobacterium infective suspension at a pH of 5.0, an acetosyringone concentration of 200 µM, a cocultivation at 28 °C, a cocultivation for 72 h and a sucrose concentration of 30 g/L in the cocultivation medium. We also showed that preculture of wounded leaf explants for two days increased the regeneration rate. The integration of the desired gene into transgenic poplars was detected using selective medium containing kanamycin, followed by southern blot analysis. The expression of the transgene in the transgenic lines was confirmed by northern blot analysis.

  18. An Efficient Agrobacterium-Mediated Transformation System for Poplar

    Directory of Open Access Journals (Sweden)

    Ali Movahedi

    2014-06-01

    Full Text Available Poplar is a model system for the regeneration and genetic transformation of woody plants. To shorten the time required for studies of transgenic poplar, efforts have been made to optimize transformation methods that use Agrobacterium tumefaciens. In this study, an Agrobacterium infective suspension was treated at 4 °C for at least 10 h before infecting explants. By transforming the Populus hybrid clone “Nanlin895” (Populus deltoides × P. euramericana with Agrobacterium harboring the PBI121:CarNAC6 binary vector, we showed that the transformation efficiency was improved significantly by multiple independent factors, including an Agrobacterium infective suspension with an OD600 of 0.7, an Agrobacterium infection for 120 min, an Agrobacterium infective suspension at a pH of 5.0, an acetosyringone concentration of 200 µM, a cocultivation at 28 °C, a cocultivation for 72 h and a sucrose concentration of 30 g/L in the cocultivation medium. We also showed that preculture of wounded leaf explants for two days increased the regeneration rate. The integration of the desired gene into transgenic poplars was detected using selective medium containing kanamycin, followed by southern blot analysis. The expression of the transgene in the transgenic lines was confirmed by northern blot analysis.

  19. Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution

    Directory of Open Access Journals (Sweden)

    Zhu Sheng

    2012-08-01

    Full Text Available Abstract Background The fungus Marssonina brunnea is a causal pathogen of Marssonina leaf spot that devastates poplar plantations by defoliating susceptible trees before normal fall leaf drop. Results We sequence the genome of M. brunnea with a size of 52 Mb assembled into 89 scaffolds, representing the first sequenced Dermateaceae genome. By inoculating this fungus onto a poplar hybrid clone, we investigate how M. brunnea interacts and co-evolves with its host to colonize poplar leaves. While a handful of virulence genes in M. brunnea, mostly from the LysM family, are detected to up-regulate during infection, the poplar down-regulates its resistance genes, such as nucleotide binding site domains and leucine rich repeats, in response to infection. From 10,027 predicted proteins of M. brunnea in a comparison with those from poplar, we identify four poplar transferases that stimulate the host to resist M. brunnea. These transferas-encoding genes may have driven the co-evolution of M. brunnea and Populus during the process of infection and anti-infection. Conclusions Our results from the draft sequence of the M. brunnea genome provide evidence for genome-genome interactions that play an important role in poplar-pathogen co-evolution. This knowledge could help to design effective strategies for controlling Marssonina leaf spot in poplar.

  20. Contribution factor of wood properties of three poplar clones to strength of laminated veneer lumber

    Science.gov (United States)

    Fucheng Bao; Feng Fu; Elvin Choong; Chung-Yun Hse

    2001-01-01

    The term "Contribution Factor" (c.) was introduced in this paper to indicate the contribution ratio of solid wood properties to laminated veneer lumber (LVL) strength. Three poplar (Populus sp.) clones were studied, and the results showed that poplar with good solid wood properties has high Contribution Factor. The average Contribution...

  1. Key factors for causing poplar Ice Nucleation Active bacterial canker and its control techniques

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The isolation, culture and the active determination of poplar ice nucleation active (INA) bacteria and the inoculation tests in laboratory and field were conducted, and the varieties, distribution and number of poplar INA bacteria and its pathogenicity and freezing injury property were determined. The study results showed that the INA bacteria widely spread on poplar in Northeast China and caused the frozen injury for poplar under the frost condition in Spring or Autumn, which was the key factor to induce INA bacterial canker. Through evaluation and investigation of different poplar varieties and inoculation tests, fine disease-resistant varieties and strains of poplar suitable for Northeast China were selected. Further tests for strong seedling showed that burying cuttings in sand and covering with plastic film could effectively avoid the frostbite, frozen and drought damage, reduce INA bacteria infection, and promote poplar growth. INA bacterial canker was detected early by highly specialized antiserums of INA bacteria and the agglutinated test of ring-shaped boundary surface. The inducers such as streptomycin, phenylmercuric acetae, salicylic acid and heat-killed bacteria to immerse cuttings, have obvious induced disease-resistant effect. Before poplar sprouted in early spring, through spraying the solution of frostbite agent, the control effect also was obvious.

  2. WUS and STM-based reporter genes for studying meristem development in poplar

    Science.gov (United States)

    We describe the development of a reporter system for monitoring meristem initiation in poplar using promoters of poplar homologs to the meristem-active regulatory genes WUSCHEL (WUS) and SHOOTMERISTEMLESS (STM). When ~3 kb of the 5’ flanking regions of close homologs were used to drive expression o...

  3. Pulping performance of transgenic poplar with depressed Caffeoyl-CoA O-methyltransferase

    Institute of Scientific and Technical Information of China (English)

    WEI JianHua; WANG YanZhen; WANG HongZhi; LI RuiFen; LIN Nan; MA RongCai; QU LeQing; SONG YanRu

    2008-01-01

    This paper evaluated pulping performance of 3-year-old field-grown transgenic poplar (Populus tremula × Populus alba). The transgenic poplar with anti-sense CCoAOMT had an about 13% decreased lignin content, in which a slight increment was found in S/G ratio. Chemical analysis showed that the trans-genic poplar had significantly less benezene-ethanol extractive than that of control wood, but no sig-nificant differences were found in contents of ash, cold water extractive, hot water extractive, 1% NaOH extractive, holocellulose, pentosans and cellulose. Fiber assay demonstrated that down-regulation of CCoAOMTexpression improved the fiber quality in transgenic poplar. Kraft pulping showed that lower lignin in transgenic poplar led to remarkable improved pulp quality and increased pulp yield.

  4. Effects of climate factors on the height increment of poplar protection forest in the riverbank field

    Institute of Scientific and Technical Information of China (English)

    LIHai-mei; HEXing-yuan; WANGKui-ling

    2004-01-01

    Based on the data of stand investigation and stem analysis, the effects of climate factors on the poplar protection forest increment in the riverbank field of the Dalinghe and Xiaolinghe rivers of Liaoning Province, China were studied by stepwise regression procedure and grey system theories and methods. A regression model reflecting the correlation between the height increment of poplar protection forest and climatic factors was developed. The order of grey relevance for the effect of climatic factors on the height increment of poplar protection forest is" light>water>heat, and it could be interpreted that the poplar increment was mainly influenced by light factor, water factor, and heat factor. This result will provide scientific basis for the intensive cultivation and regeneration of the poplar protection forest in riverbank field in similar regions in China.

  5. The use of the white poplar (Populus alba L.) biomass as fuel

    Institute of Scientific and Technical Information of China (English)

    Tatiana Griu; Aurel Lunguleasa

    2016-01-01

    We determined the calorific value of white poplar (Populus alba L.) woody biomass to use it as fire-wood. The value of 19.133 MJ kg-1 obtained experimen-tally shows that the white poplar can be quite successfully used as firewood. Being of a lower quality in comparison with usual beech firewood, the white poplar has similar calorific value. The white poplar has a calorific density of 30.7%lower than that of current firewood. That is why the price of this firewood from white poplar is lower accord-ingly. Also, the prognosis of calorific value on the basis of the main chemical elements, being very close to the experimental value (?2.6%), indicates an appropriate value can be achieved to be used for investigation with the chemical element analysis.

  6. Progress in the Study of Molecular Genetic Improvements of Poplar in China

    Institute of Scientific and Technical Information of China (English)

    Shan-Zhi Lin; Zhi-Yi Zhang; Qian Zhang; Yuan-Zhen Lin

    2006-01-01

    The poplar is one of the most economically important and intensively studied tree species owing to its wide application in the timber industry and as a model material for the study of woody plants. The natural resource of poplars in China is replete. Over the past 10 years, the application of molecular biological techniques to genetic improvements in poplar species has been widely studied in China. Recent advances in molecular genetic improvements of poplar, including cDNA library construction, gene cloning and identification, genetic engineering, gene expression, genetic linkage map construction, mapping of quantitative trait loci (QTL) and molecular-assisted selection, are reviewed in the present paper. In addition, the application of modern biotechnology to molecular improvements in the genetic traits of the poplar and some unsolved problems are discussed.

  7. Arrays of optical vortices formed by "fork" holograms

    CERN Document Server

    Bekshaev, A Ya; Mohammed, K A

    2014-01-01

    Singular light beams with optical vortices (OV) are often generated by means of thin binary gratings with groove bifurcation ("fork holograms") that produce a set of diffracted beams with different OV charges. Usually, only single separate beams are used and investigated; here we consider the whole set of diffracted OV beams that, at certain conditions, are involved in efficient mutual interference to form a characteristic pattern where the ring-like structure of separate OV beams is replaced by series of bright and dark lines between adjacent diffraction orders. This pattern, well developed for high diffraction orders, reflects the main spatial properties of the diffracted beams as well as of the fork grating used for their generation. In particular, it confirms the theoretical model for the diffracted beams (Kummer beam model) and enables to determine the sign and the absolute value of the phase singularity embedded in the hologram.

  8. Replication fork stability confers chemoresistance in BRCA-deficient cells

    DEFF Research Database (Denmark)

    Chaudhuri, Arnab Ray; Callen, Elsa; Ding, Xia;

    2016-01-01

    Cells deficient in the Brca1 and Brca2 genes have reduced capacity to repair DNA double-strand breaks by homologous recombination and consequently are hypersensitive to DNA-damaging agents, including cisplatin and poly(ADP-ribose) polymerase (PARP) inhibitors. Here we show that loss of the MLL3....../4 complex protein, PTIP, protects Brca1/2-deficient cells from DNA damage and rescues the lethality of Brca2-deficient embryonic stem cells. However, PTIP deficiency does not restore homologous recombination activity at double-strand breaks. Instead, its absence inhibits the recruitment of the MRE11...... nuclease to stalled replication forks, which in turn protects nascent DNA strands from extensive degradation. More generally, acquisition of PARP inhibitors and cisplatin resistance is associated with replication fork protection in Brca2-deficient tumour cells that do not develop Brca2 reversion mutations...

  9. Environmental Assessment: Demolish 934 of Grand Forks Air Force Base

    Science.gov (United States)

    2006-03-01

    the “ Prairie View Nature Preserve” has been developed to restore a part of the native tallgrass prairie that once was dominant in this region...buffalo grass, and many native wildflower species. The Grand Forks AFB Natural Resources Manager installed a butterfly garden in the Prairie View...identified as jurisdictional. Vegetation is robust at GFAFB wetlands, and they are characterized as typical prairie potholes found within the

  10. Environmental Assessment - Demolish 934 of Grand Forks Air Force Base

    Science.gov (United States)

    2006-03-01

    in the “ Prairie View Nature Preserve” has been developed to restore a part of the native tallgrass prairie that once was dominant in this region...buffalo grass, and many native wildflower species. The Grand Forks AFB Natural Resources Manager installed a butterfly garden in the Prairie View...identified as jurisdictional. Vegetation is robust at GFAFB wetlands, and they are characterized as typical prairie potholes found within the

  11. South Fork Clearwater River Habitat Enhancement, Nez Perce National Forest.

    Energy Technology Data Exchange (ETDEWEB)

    Siddall, Phoebe

    1992-04-01

    In 1984, the Nez Perce National forest and the Bonneville Power Administration entered into a contractual agreement which provided for improvement of spring chinook salmon and summer steelhead trout habitat in south Fork Clearwater River tributaries. Project work was completed in seven main locations: Crooked River, Red River, Meadow Creek Haysfork Gloryhole, Cal-Idaho Gloryhole, Fisher Placer and Leggett Placer. This report describes restoration activities at each of these sites.

  12. 68erne – en forkælet generation?

    DEFF Research Database (Denmark)

    Jørgensen, Thomas Ekman; L. B. Jensen, Steven

    2007-01-01

    Kronikken gennemgår beskyldningerne mod 1968erne for at være en forkælet generation, der sidder på magten og pengene i Danmark. De væsentligste argumenter er, at de samfundsændringer, '1968' afstedkom, gav gode chancer for højtuddannede fra alle generationer. Til gengæld har de forringet chancerne...

  13. Environmental Assessment Housing Transfer at Grand Forks AFB, North Dakota

    Science.gov (United States)

    2005-01-27

    of grasses, legumes, and wild herbaceous plants. Included in the grasses and legumes vegetation species are tall wheat grass, brome grass, Kentucky ...little bluestem, Indian grass, switchgrass, blue gramma, buffalo grass, and many native wildflower species. 35 Two hundred and fifty five taxa...were identified in the ND Natural Heritage Inventory and the BS Bioserve biological inventory update for Grand Forks Air Force Base. Two rare orchid

  14. Environmental Assessment Tent City at Grand Forks AFB, North Dakota

    Science.gov (United States)

    2004-11-15

    legumes, and wild herbaceous plants. Included in the grasses and legumes vegetation species are tall wheat grass, brome grass, Kentucky bluegrass, sweet...bluestem, Indian grass, switchgrass, blue gramma, buffalo grass, and many native wildflower species. Two hundred and fifty five taxa were...identified in the ND Natural Heritage Inventory and the BS Bioserve biological inventory update for Grand Forks Air Force Base. Two rare orchid species are

  15. Molecular clock fork phylogenies: closed form analytic maximum likelihood solutions.

    Science.gov (United States)

    Chor, Benny; Snir, Sagi

    2004-12-01

    Maximum likelihood (ML) is increasingly used as an optimality criterion for selecting evolutionary trees, but finding the global optimum is a hard computational task. Because no general analytic solution is known, numeric techniques such as hill climbing or expectation maximization (EM) are used in order to find optimal parameters for a given tree. So far, analytic solutions were derived only for the simplest model-three-taxa, two-state characters, under a molecular clock. Quoting Ziheng Yang, who initiated the analytic approach,"this seems to be the simplest case, but has many of the conceptual and statistical complexities involved in phylogenetic estimation."In this work, we give general analytic solutions for a family of trees with four-taxa, two-state characters, under a molecular clock. The change from three to four taxa incurs a major increase in the complexity of the underlying algebraic system, and requires novel techniques and approaches. We start by presenting the general maximum likelihood problem on phylogenetic trees as a constrained optimization problem, and the resulting system of polynomial equations. In full generality, it is infeasible to solve this system, therefore specialized tools for the molecular clock case are developed. Four-taxa rooted trees have two topologies-the fork (two subtrees with two leaves each) and the comb (one subtree with three leaves, the other with a single leaf). We combine the ultrametric properties of molecular clock fork trees with the Hadamard conjugation to derive a number of topology dependent identities. Employing these identities, we substantially simplify the system of polynomial equations for the fork. We finally employ symbolic algebra software to obtain closed formanalytic solutions (expressed parametrically in the input data). In general, four-taxa trees can have multiple ML points. In contrast, we can now prove that each fork topology has a unique(local and global) ML point.

  16. Stalled replication forks within heterochromatin require ATRX for protection.

    Science.gov (United States)

    Huh, M S; Ivanochko, D; Hashem, L E; Curtin, M; Delorme, M; Goodall, E; Yan, K; Picketts, D J

    2016-05-12

    Expansive growth of neural progenitor cells (NPCs) is a prerequisite to the temporal waves of neuronal differentiation that generate the six-layered neocortex, while also placing a heavy burden on proteins that regulate chromatin packaging and genome integrity. This problem is further reflected by the growing number of developmental disorders caused by mutations in chromatin regulators. ATRX gene mutations cause a severe intellectual disability disorder (α-thalassemia mental retardation X-linked (ATRX) syndrome; OMIM no. 301040), characterized by microcephaly, urogenital abnormalities and α-thalassemia. Although the ATRX protein is required for the maintenance of repetitive DNA within heterochromatin, how this translates to disease pathogenesis remain poorly understood and was a focus of this study. We demonstrate that Atrx(FoxG1Cre) forebrain-specific conditional knockout mice display poly(ADP-ribose) polymerase-1 (Parp-1) hyperactivation during neurogenesis and generate fewer late-born Cux1- and Brn2-positive neurons that accounts for the reduced cortical size. Moreover, DNA damage, induced Parp-1 and Atm activation is elevated in progenitor cells and contributes to their increased level of cell death. ATRX-null HeLa cells are similarly sensitive to hydroxyurea-induced replication stress, accumulate DNA damage and proliferate poorly. Impaired BRCA1-RAD51 colocalization and PARP-1 hyperactivation indicated that stalled replication forks are not efficiently protected. DNA fiber assays confirmed that MRE11 degradation of stalled replication forks was rampant in the absence of ATRX or DAXX. Indeed, fork degradation in ATRX-null cells could be attenuated by treatment with the MRE11 inhibitor mirin, or exacerbated by inhibiting PARP-1 activity. Taken together, these results suggest that ATRX is required to limit replication stress during cellular proliferation, whereas upregulation of PARP-1 activity functions as a compensatory mechanism to protect stalled forks

  17. South Fork Salmon River Watershed Restoration, 2008-2009 Annual Report.

    Energy Technology Data Exchange (ETDEWEB)

    Reaney, Mark D. [Nez Perce Tribe Department of Fisheries Resource Management

    2009-04-15

    The watershed restoration work elements within the project area, the South Fork Salmon River Watershed, follow the watershed restoration approach adopted by the Nez Perce Tribe Department of Fisheries Resource Management (DFRM) - Watershed Division. The vision of the Nez Perce Tribe DFRM-Watershed Division focuses on protecting, restoring, and enhancing watersheds and treaty resources within the ceded territory of the Nez Perce Tribe under the Treaty of 1855 with the United States Federal Government. The program uses a holistic approach, which encompasses entire watersheds, ridge top to ridge top, emphasizing all cultural aspects and strategies that rely on natural fish production and healthy river ecosystems. The Nez Perce Tribe DFRM-Watershed Division strives towards maximizing historic ecosystem productivity and health for the restoration of anadromous and resident fish populations and the habitat on which all depend on for future generations Originally, this project was funded to create a step/pool stream channel that was appropriate to restore fish passage where the 'Glory Hole Cascade' is currently located at the Stibnite Mine. Due to unforeseen circumstances at the time, the project is unable to move forward as planned and a request for a change in scope of the project and an expansion of the geographic area in which to complete project work was submitted. No additional funds were being requested. The ultimate goal of this project is to work with the holistic, ridge top to ridge top approach to protect and restore the ecological and biological functions of the South Fork Salmon River Watershed to assist in the recovery of threatened and endangered anadromous and resident fish species. FY 2008 Work Elements included two aquatic organism passage (AOP) projects to restore habitat connectivity to two fish-bearing tributaries to the East Fork South Fork Salmon River, Salt and Profile Creeks. The Work Elements also included road survey and assessment

  18. Timing, coordination, and rhythm: Acrobatics at the DNA replication fork

    KAUST Repository

    Hamdan, Samir

    2010-04-09

    In DNA replication, the antiparallel nature of the parental duplex imposes certain constraints on the activity of the DNA polymerases that synthesize new DNA. The leading-strand polymerase advances in a continuous fashion, but the lagging-strand polymerase is forced to restart at short intervals. In several prokaryotic systems studied so far, this problem is solved by the formation of a loop in the lagging strand of the replication fork to reorient the lagging-strand DNA polymerase so that it advances in parallel with the leading-strand polymerase. The replication loop grows and shrinks during each cycle of Okazaki fragment synthesis. The timing of Okazaki fragment synthesis and loop formation is determined by a subtle interplay of enzymatic activities at the fork. Recent developments in single-molecule techniques have enabled the direct observation of these processes and have greatly contributed to a better understanding of the dynamic nature of the replication fork. Here, we will review recent experimental advances, present the current models, and discuss some of the exciting developments in the field. 2010 by The American Society for Biochemistry and Molecular Biology, Inc.

  19. Ku stabilizes replication forks in the absence of Brc1.

    Directory of Open Access Journals (Sweden)

    Arancha Sánchez

    Full Text Available DNA replication errors are a major source of genome instability in all organisms. In the fission yeast Schizosaccharomyces pombe, the DNA damage response protein Brc1 binds phospho-histone H2A (γH2A-marked chromatin during S-phase, but how Brc1 protects genome integrity remains unclear. Here we report that the non-homologous end-joining (NHEJ protein Ku becomes critical for survival of replication stress in brc1∆ cells. Ku's protective activity in brc1∆ cells does not involve its canonical NHEJ function or its roles in protecting telomeres or shielding DNA ends from Exo1 exonuclease. In brc1∆ pku80∆ cells, nuclear foci of Rad52 homologous recombination (HR protein increase and Mus81-Eme1 Holliday junction resolvase becomes critical, indicating increased replication fork instability. Ku's localization at a ribosomal DNA replication fork barrier associated with frequent replisome-transcriptosome collisions increases in brc1∆ cells and increased collisions correlate with an enhanced requirement for Brc1. These data indicate that Ku stabilizes replication forks in the absence of Brc1.

  20. Continuous water-quality monitoring and regression analysis to estimate constituent concentrations and loads in the Red River of the North at Fargo and Grand Forks, North Dakota, 2003-12

    Science.gov (United States)

    Galloway, Joel M.

    2014-01-01

    The Red River of the North (hereafter referred to as “Red River”) Basin is an important hydrologic region where water is a valuable resource for the region’s economy. Continuous water-quality monitors have been operated by the U.S. Geological Survey, in cooperation with the North Dakota Department of Health, Minnesota Pollution Control Agency, City of Fargo, City of Moorhead, City of Grand Forks, and City of East Grand Forks at the Red River at Fargo, North Dakota, from 2003 through 2012 and at Grand Forks, N.Dak., from 2007 through 2012. The purpose of the monitoring was to provide a better understanding of the water-quality dynamics of the Red River and provide a way to track changes in water quality. Regression equations were developed that can be used to estimate concentrations and loads for dissolved solids, sulfate, chloride, nitrate plus nitrite, total phosphorus, and suspended sediment using explanatory variables such as streamflow, specific conductance, and turbidity. Specific conductance was determined to be a significant explanatory variable for estimating dissolved solids concentrations at the Red River at Fargo and Grand Forks. The regression equations provided good relations between dissolved solid concentrations and specific conductance for the Red River at Fargo and at Grand Forks, with adjusted coefficients of determination of 0.99 and 0.98, respectively. Specific conductance, log-transformed streamflow, and a seasonal component were statistically significant explanatory variables for estimating sulfate in the Red River at Fargo and Grand Forks. Regression equations provided good relations between sulfate concentrations and the explanatory variables, with adjusted coefficients of determination of 0.94 and 0.89, respectively. For the Red River at Fargo and Grand Forks, specific conductance, streamflow, and a seasonal component were statistically significant explanatory variables for estimating chloride. For the Red River at Grand Forks, a time

  1. Importance of Mobile Genetic Elements and Conjugal Gene Transfer for Subsurface Microbial Community Adaptation to Biotransformation of Metals

    Energy Technology Data Exchange (ETDEWEB)

    Sorensen, Soren J.

    2004-06-01

    Soils used in the present DOE project were obtained from the Field Research Center (FRC) through correspondence with FRC Manager David Watson. We obtained a total of six soils sampled at different distances from the surface: (A) Non-contaminated surface soil from Hinds Creek Floodplain (0 mbs (meter below surface)). (B) Mercury-contaminated surface soil from Lower East Fork Poplar Creek Floodplain (0 mbs). (C) Mercury-contaminated subsurface soil from Lower East Fork Poplar Creek Floodplain (0.5 mbs). (D) Mercury-contaminated subsurface soil from Lower East Fork Poplar Creek Floodplain (1.0 mbs). (E) Non-contaminated surface soil from Ish Creek Floodplain (0 mbs). (F) Non-contaminated surface soil from Ish Creek Floodplain (0.5 mbs).

  2. Reduced rate of DNA replication fork movement in megaloblastic anemia.

    Science.gov (United States)

    Wickremasinghe, R G; Hoffbrand, A V

    1980-01-01

    Chromatography on benzoylated naphthoylated DEAE-cellulose has been used to fractionate fully double-stranded from partially single-stranded DNA molecules. DNA was extracted from phytohemagglutinin-stimulated lymphocytes from patients with megaloblastic anemia resulting from vitamin B12 or folate deficiency after pulse-labeling the cells with [3H]thymidine for 5 min and chasing in unlabeled medium for 24 h. No gross accumulation of partially single-stranded material was observed in the DNA of these cells when compared with DNA from similarly labeled control cells obtained by the addition of 5-formyl tetrahydrofolic acid to the culture medium. When DNA from lymphocytes labeled with a 5-min pulse of [3H]thymidine and sheared to fragments of an average length of 18 micrometer was chromatographed on benzoylated naphthoylated DEAE-cellulose, approximately 80% of the label was recovered in the partially single-stranded fraction. After chasing in unlabeled medium the label was progressively transferred to the double-stranded fraction over a period of 2--3 h. The rate of transfer was slower in megaloblastic lymphocytes than in controls. The difference in rate suggested a slower rate of replication fork movement in megaloblastic lymphocytes and so the density shift technique of Painter and schaeffer (J. Mol. Biol. 45: 467--479, 1969) was used to measure the fork rate directly. [3H]Deoxycytidine was used as the labeled nucleoside to avoid possible complications arising from [3H]thymidine labeling of megaloblastic cells. Investigations on the lymphocytes from four patients showed that the replication fork rate in vitamin-treated control lyphocytes was about 1 micrometer/min. The fork rates in the corresponding untreated cells were invariably lower and rates ranging from 40 to 92% of those of controls were observed. Normal lymphocytes treated with the deoxynucleotide pool-depleting drugs methotrexate or hydroxyurea displayed defects in DNA synthesis similar to those of

  3. Take It Slow: can feedback from a smart fork reduce eating speed?

    Directory of Open Access Journals (Sweden)

    Sander Hermsen

    2015-09-01

    The present study examines the efficacy of a smart fork that helps people to eat more slowly. This adapted fork records eating speed and delivers vibrotactile feedback if users eat too quickly. In two studies, we tested the acceptability and user experience of the fork (Study 1, and its effect on eating rate and satiety levels in a controlled lab-setting (Study 2. Method: In study 1, 11 participants (all self-reported fast eaters ate a meal using the fork in our laboratory and used the fork for three consecutive days in their home setting. Participants took part in semi-structured interviews after the first meal and upon returning the fork, covering perceived effect on eating rate, comfort of use, accuracy, and motivational and social aspects of fork use. Interviews were coded and a thematic classification analysis was performed. In study 2, 128 participants (all self-reported fast eaters ate a standardized meal using the fork in our laboratory. We used a between-participants design with 2 conditions; participants ate their meal either with vibrotactile feedback from the fork (experimental condition or ate their meal without vibrotactile feedback (control condition. Eating rate, meal duration, error rate (number of bites taken faster than 10 seconds after previous bite, total food intake, and satiety were recorded for every participant. Results: Study 1: All participants felt that the feedback was generally accurate and consistent. Fork size, weight, and intensity of the feedback were seen as comfortable and acceptable. All participants reported a heightened awareness of eating rate and all but one participant reported eating more slowly with the fork. Study 2: Participants in the experimental condition ate significantly slower, and with a lower error rate than those in the control condition. Feedback did not significantly affect the amount of food eaten. Conclusions: Our findings suggest that this smart fork is an acceptable and effective tool to disrupt and

  4. The fork and the kinase: a DNA replication tale from a CHK1 perspective.

    Science.gov (United States)

    González Besteiro, Marina A; Gottifredi, Vanesa

    2015-01-01

    Replication fork progression is being continuously hampered by exogenously introduced and naturally occurring DNA lesions and other physical obstacles. Checkpoint kinase 1 (Chk1) is activated at replication forks that encounter damaged DNA. Subsequently, Chk1 inhibits the initiation of new replication factories and stimulates the firing of dormant origins (those in the vicinity of stalled forks). Chk1 also avoids fork collapse into DSBs (double strand breaks) and promotes fork elongation. At the molecular level, the current model considers stalled forks as the site of Chk1 activation and the nucleoplasm as the location where Chk1 phosphorylates target proteins. This model certainly serves to explain how Chk1 modulates origin firing, but how Chk1 controls the fate of stalled forks is less clear. Interestingly, recent reports demonstrating that Chk1 phosphorylates chromatin-bound proteins and even holds kinase-independent functions might shed light on how Chk1 contributes to the elongation of damaged DNA. Indeed, such findings have unveiled a puzzling connection between Chk1 and DNA lesion bypass, which might be central to promoting fork elongation and checkpoint attenuation. In summary, Chk1 is a multifaceted and versatile signaling factor that acts at ongoing forks and replication origins to determine the extent and quality of the cellular response to replication stress.

  5. Wood Properties of Poplar from Stand Affected by Acid Rain

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Wood properties from 28 trees (Populus euramericana) selected from healthy and acid rain damaged forest were measured to evaluate the possible impacts on wood quality and utilization. On the heavily damaged location, the pH value of precipitation ranged from 3.7-5.0, and sulfate loading ranged from 20-40 kg·ha-2.y-1. Quantitative and qualitative studies on ring width, physical properties and mechanical properties indicated that changes of wood properties between diseased and healthy poplar occurred. Aci...

  6. Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral "Salicoid" Genome Duplication.

    Science.gov (United States)

    Hou, Jing; Ye, Ning; Dong, Zhongyuan; Lu, Mengzhu; Li, Laigeng; Yin, Tongming

    2016-06-27

    Populus (poplar) and Salix (willow) are sister genera in the Salicaceae family. In both lineages extant species are predominantly diploid. Genome analysis previously revealed that the two lineages originated from a common tetraploid ancestor. In this study, we conducted a syntenic comparison of the corresponding 19 chromosome members of the poplar and willow genomes. Our observations revealed that almost every chromosomal segment had a parallel paralogous segment elsewhere in the genomes, and the two lineages shared a similar syntenic pinwheel pattern for most of the chromosomes, which indicated that the two lineages diverged after the genome reorganization in the common progenitor. The pinwheel patterns showed distinct differences for two chromosome pairs in each lineage. Further analysis detected two major interchromosomal rearrangements that distinguished the karyotypes of willow and poplar. Chromosome I of willow was a conjunction of poplar chromosome XVI and the lower portion of poplar chromosome I, whereas willow chromosome XVI corresponded to the upper portion of poplar chromosome I. Scientists have suggested that Populus is evolutionarily more primitive than Salix. Therefore, we propose that, after the "salicoid" duplication event, fission and fusion of the ancestral chromosomes first give rise to the diploid progenitor of extant Populus species. During the evolutionary process, fission and fusion of poplar chromosomes I and XVI subsequently give rise to the progenitor of extant Salix species. This study contributes to an improved understanding of genome divergence after ancient genome duplication in closely related lineages of higher plants.

  7. Enhancement of Biogas Yield of Poplar Leaf by High-Solid Codigestion with Swine Manure.

    Science.gov (United States)

    Wangliang, Li; Zhikai, Zhang; Guangwen, Xu

    2016-05-01

    The aim of this work was to examine the improvement of anaerobic biodegradability of organic fractions of poplar leaf from codigestion with swine manure (SM), thus biogas yield and energy recovery. When poplar leaf was used as a sole substrate, the cumulative biogas yield was low, about 163 mL (g volatile solid (VS))(-1) after 45 days of digestion with a substrate/inoculum ratio of 2.5 and a total solid (TS) of 22 %. Under the same condition, the cumulative biogas yield of poplar leaf reached 321 mL (g VS)(-1) when SM/poplar leaf ratio was 2:5 (based on VS). The SM/poplar leaf ratio can determine C/N ratio of the cosubstrate and thus has significant influence on biogas yield. When the SM/poplar leaf ratio was 2:5, C/N ratio was calculated to be 27.02, and the biogas yield in 45 days of digestion was the highest. The semi-continuous digestion of poplar leaf was carried out with the organic loading rate of 1.25 and 1.88 g VS day(-1). The average daily biogas yield was 230.2 mL (g VS)(-1) and 208.4 mL (g VS)(-1). The composition analysis revealed that cellulose and hemicellulose contributed to the biogas production.

  8. Rock fall simulation at Timpanogos Cave National Monument, American Fork Canyon, Utah, USA

    Science.gov (United States)

    Harp, Edwin L.; Dart, Richard L.; Reichenbach, Paola

    2011-01-01

    Rock fall from limestone cliffs at Timpanogos Cave National Monument in American Fork Canyon east of Provo, Utah, is a common occurrence. The cave is located in limestone cliffs high on the southern side of the canyon. One fatality in 1933 led to the construction of rock fall shelters at the cave entrance and exit in 1976. Numerous rock fall incidents, including a near miss in 2000 in the vicinity of the trail below the cave exit, have led to a decision to extend the shelter at the cave exit to protect visitors from these ongoing rock fall events initiating from cliffs immediately above the cave exit. Three-dimensional rock fall simulations from sources at the top of these cliffs have provided data from which to assess the spatial frequencies and velocities of rock falls from the cliffs and to constrain the design of protective measures to reduce the rock fall hazard. Results from the rock fall simulations are consistent with the spatial patterns of rock fall impacts that have been observed at the cave exit site.

  9. Archaeological Investigations on the East Fork of the Salmon River, Custer County, Idaho.

    Science.gov (United States)

    1984-01-01

    CITED Aikens, C. Melvin 1970 Hogup Cave . University of Utah Anthropological Papers, No. 93. Salt Lake City. Butler, B. Robert 1971 A Bison Jump in...the Camas Creek Drainage .. Basin, Owyhee County, Idaho. Boise State University Archaeological Reports, No. 1. Boise. Sappington, Robert Lee 1981 A

  10. BRCA1 controls homologous recombination at Tus/Ter-stalled mammalian replication forks.

    Science.gov (United States)

    Willis, Nicholas A; Chandramouly, Gurushankar; Huang, Bin; Kwok, Amy; Follonier, Cindy; Deng, Chuxia; Scully, Ralph

    2014-06-26

    Replication fork stalling can promote genomic instability, predisposing to cancer and other diseases. Stalled replication forks may be processed by sister chromatid recombination (SCR), generating error-free or error-prone homologous recombination (HR) outcomes. In mammalian cells, a long-standing hypothesis proposes that the major hereditary breast/ovarian cancer predisposition gene products, BRCA1 and BRCA2, control HR/SCR at stalled replication forks. Although BRCA1 and BRCA2 affect replication fork processing, direct evidence that BRCA gene products regulate homologous recombination at stalled chromosomal replication forks is lacking, due to a dearth of tools for studying this process. Here we report that the Escherichia coli Tus/Ter complex can be engineered to induce site-specific replication fork stalling and chromosomal HR/SCR in mouse cells. Tus/Ter-induced homologous recombination entails processing of bidirectionally arrested forks. We find that the Brca1 carboxy (C)-terminal tandem BRCT repeat and regions of Brca1 encoded by exon 11-two Brca1 elements implicated in tumour suppression-control Tus/Ter-induced homologous recombination. Inactivation of either Brca1 or Brca2 increases the absolute frequency of 'long-tract' gene conversions at Tus/Ter-stalled forks, an outcome not observed in response to a site-specific endonuclease-mediated chromosomal double-strand break. Therefore, homologous recombination at stalled forks is regulated differently from homologous recombination at double-strand breaks arising independently of a replication fork. We propose that aberrant long-tract homologous recombination at stalled replication forks contributes to genomic instability and breast/ovarian cancer predisposition in BRCA mutant cells.

  11. Phytoextraction of risk elements by willow and poplar trees.

    Science.gov (United States)

    Kacálková, Lada; Tlustoš, Pavel; Száková, Jiřina

    2015-01-01

    To characterize the phytoextraction efficiency of two clones of willow trees (Salix x smithiana Willd., Salix rubens) and two clones of poplar trees (Populus nigra x maximowiczii, Populus nigra Wolterson) were planted in contaminated soil (0.4-2.0 mg Cd.kg(-1), 78-313 mg Zn.kg(-1), 21.3-118 mg Cu.kg(-1)). Field experiment was carried out in Czech Republic. The study investigated their ability to accumulate heavy metals (Cd, Zn, and Cu) in harvestable plant parts. The poplars produced higher amount of biomass than willows. Both Salix clones accumulated higher amount of Cd, Zn and Cu in their biomass (maximum 6.8 mg Cd.kg(-1), 909 mg Zn.kg(-1), and 17.7 mg Cu.kg(-1)) compared to Populus clones (maximum 2.06 mg Cd.kg(-1), 463 mg Zn.kg(-1), and 11.8 mg Cu.kg(-1)). There were no significant differences between clones of individual species. BCs for Cd and Zn were greater than 1 (the highest in willow leaves). BCs values of Cu were very low. These results indicate that Salix is more suitable plant for phytoextraction of Cd and Zn than Populus. The Cu phytoextraction potential of Salix and Populus trees was not confirmed in this experiment due to low soil availability of this element.

  12. Enhancement of Enzymatic Saccharification of Poplar by Green Liquor Pretreatment

    Directory of Open Access Journals (Sweden)

    Xin Meng

    2014-04-01

    Full Text Available Green liquor (Na2S + Na2CO3, GL pretreatment is an effective pathway for improving the enzymatic digestibility of lignocellulosic biomass for the production of bioethanol. In this work, GL was employed as a pretreatment to enhance the enzymatic saccharification of poplar. During pretreatment, the increase of H-factor and TTA charge resulted in enhanced delignification and increased degradation of polysaccharides. The sugar yield of enzymatic hydrolysis increased rapidly with increasing TTA charge in GL pretreatment, while the effect of different H-factors (from 400 to 800 on sugar yield was unnoticeable. The pretreated solid recovery was 75.5% at a lignin removal rate of 29.2% under optimized conditions of total titratable alkali (TTA charge 20%, sulfidity 25%, and H-factor 400. The sugar yield of glucan, xylan, and total sugar of GL-pretreated poplar in enzymatic hydrolysis reached up to 89.9%, 65.5%, and 82.8%, respectively, at a cellulase loading of 40 FPU/g-cellulose.

  13. Progress and Strategies in Cross Breeding of Poplars in China

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The advance in intrasection and intersection cross breeding of poplars in China over the past 50 years is reviewed. Great progress has been made in Sections Leuce and Aigeiros, and satisfactory results of intersection hybridization have been achieved in the crossing between Sections Tacamahaca and Aigeiros. The modes of hybridization include single cross, double cross, triple cross, backcross, etc. It is known that using hybrids as parents to cross with other species or hybrids is an effective and easy way to obtain heterosis. Fast growth, cold and drought tolerance, pest and disease resistance, narrow crowns and rootage, etc. are breeding goals. The conventional artificial crossing is still a major breeding method, and a combination of the conventional artificial crossing with physical radiation and chemical induction can create new triploid individuals that possess higher yield potential. The super clones cultivated have already displayed enormous socioeconomic and ecological benefits in practice. Finally, the problems that investigators have to face at present are discussed as well as some strategies in poplar cross breeding in China.

  14. Soils organic C sequestration under poplar and willow agroforestry systems

    Science.gov (United States)

    Gunina, Anna; Tariq, Azeem; Lamersdorf, Norbert

    2015-04-01

    Short rotation coppices (SRC) as monocultures or as agroforestry (AF) applications (e.g. alley cropping) are two techniques to implement forest into agricultural practices. Despite afforestation promotes soil carbon (C) accumulation, age and type of the tree stand can affect the C accumulation in different degrees. Here, we studied the impact of afforestation on C accumulation for: i) pure SCR of willow (Salix viminalis x Salix schwerinii) and poplar (Populus nigra x Populus maximowiczii) and ii) AF cropping system with willow. Forest systems have been established within the BEST agroforestry project in Germany. Adjacent agricultural field have been used as a control. Soil samples were collected in 2014, three years after plantation establishment, from three soil depths: 0-3, 3-20, and 20-30 cm. Total organic C, labile C (incubation of 20 g soil during 100 days with measuring of CO2) and aggregate structure were analysed. Additionally, density fractionation of the samples from 0-3 cm was applied to separate particulate organic matter (POM) and mineral fractions. Aggregates and density fractions were analyzed for C content. High input of plant litter as well as root exudates have led to increases of organic C in AF and SRC plots compare to cropland, mainly in the top 0-3 cm. The highest C content was found for willow SRC (18.2 g kg-1 soil), followed by willow-AF (15.6 g kg-1 soil), and poplar SRC (13.7 g kg-1 soil). Carbon content of cropland was 12.5 g kg-1 soil. Absence of ploughing caused increase portion of macroaggregates (>2000 μm) under SRC and AF in all soil layers as well as the highest percentage of C in that aggregate size class (70-80%). In contrast, C in cropland soil was mainly accumulated in small macroaggregates (250-2000 μm). Intensive mineralisation of fresh litter and old POM, taking place during first years of trees development, resulted to similar portions of free POM for willow AF, willow SRC and cropland (8%), and even lower ones for poplar

  15. Implementing farm-to-fork traceability in Tanzania

    CSIR Research Space (South Africa)

    Van Dyk, FE

    2005-08-01

    Full Text Available .csir.co.za Implementing farm-to-fork traceability in Tanzania Esbeth van Dyk CSIR Centre for Logistics ORSSA/SAIIE August 2005 Copyright @ CSIR 2005 www.csir.co.za Structure • Why traceability? • Legislation • Tanzania project • Recordkeeping in coffee...” Copyright @ CSIR 2005 www.csir.co.za Tanzania project Copyright @ CSIR 2005 www.csir.co.za Tanzania project • DANIDA funded (Danish government) • Business Sector Programme Support II • 4 components: Improved access to markets • 3 sub-components...

  16. Ideal synchronizer for marked pairs in fork-join network

    CERN Document Server

    Vyshenski, S V; Dubenskaya, Yu Yu

    2008-01-01

    We introduce a new functional element (synchronizer for marked pairs) meant to join results of parallel processing in two-branch fork-join queueing network. Approximations for distribution of sojourn time at the synchronizer are derived along with a validity domain. Calculations are performed assuming that: arrivals to the network form a Poisson process, each branch operates like an M/M/N queueing system. It is shown that a mean quantity of jobs in the synchronizer is bounded below by the value, defined by parameters of the network (which contains the synchronizer) and does not depend upon performance and particular properties of the synchronizer.

  17. Atomic Steps with tuning-fork-based noncontact atomic force microscopy

    NARCIS (Netherlands)

    Rensen, W.H.J.; Hulst, van N.F.; Ruiter, A.G.T.; West, P.E.

    1999-01-01

    Tuning forks as tip-sample distance detectors are a promising and versatile alternative to conventional cantilevers with optical beam deflection in noncontact atomic force microscopy (AFM). Both theory and experiments are presented to make a comparison between conventional and tuning-fork-based AFM.

  18. 76 FR 35909 - Temporary Concession Contract for Big South Fork National Recreation Area, TN/KY

    Science.gov (United States)

    2011-06-20

    ... National Recreation Area, TN/KY. SUMMARY: Pursuant to 36 CFR 51.24, public notice is hereby given that the...] Temporary Concession Contract for Big South Fork National Recreation Area, TN/KY AGENCY: National Park... visitor services within Big South Fork National Recreation Area, Tennessee and Kentucky, for a term not...

  19. 76 FR 6114 - Lincoln National Forest, New Mexico, North Fork Eagle Creek Wells Special Use Authorization

    Science.gov (United States)

    2011-02-03

    ... Forest Service Lincoln National Forest, New Mexico, North Fork Eagle Creek Wells Special Use... Ruidoso (the applicant) for continued operation of their municipal water supply wells on the North Fork of... portion of their water rights for these wells to locations off of National Forest System land; and...

  20. Imaging soft samples in liquid with tuning fork based shear force microscopy

    NARCIS (Netherlands)

    Rensen, W.H.J.; van Hulst, N.F.; Kammer, S.B.

    2000-01-01

    We present a study of the dynamic behavior of tuning forks and the application of tuning fork based shear force microscopy o­n soft samples in liquid. A shift in resonance frequency and a recovery of the tip vibration amplitude have been observed upon immersion into liquid. Conservation of the

  1. Dynamics of quartz tuning fork force sensors used in standoff photoacoustic detection

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Zhouqiang; Jia, Shuhai; Ma, Binshan; Chen, Hualing [Xi' an Jiao tong University, Xi' an (China); Wei, Yuan [Harbin Institute of Technology, Harbin (Korea, Republic of)

    2015-08-15

    In this paper, a two-degrees-of-freedom model with two coupled oscillators is established to study the dynamics of quartz tuning fork force sensors. Air squeeze-film damping is considered in this model. When the laser power is 40 mW and the distance between the tuning fork and detected objects is approximately 0.5 m, the resonance amplitude of the tuning fork under the electromagnetic radiation pressure of the laser can reach 0.22 pm. Electromagnetic radiation pressure and resonance amplitude have the tendency to exponentially decay along with the distance between the tuning fork and detected objects. The influence of laser power and distance between the tuning fork and detected objects on electromagnetic radiation pressure is also considered. Lastly, an experimental device is set up to verify the calculation result of the model. Analysis shows that the experimental data are in good agreement with the theoretical calculation results.

  2. Wettability of poplar leaves influences dew formation and infection by Melampsora larici-populina

    National Research Council Canada - National Science Library

    Pinon, Jean; Frey, Pascal; Husson, Claude

    2006-01-01

    .... The frequency and duration of dew on these clones were recorded in two nurseries. Black poplar leaves had the highest wettability, with relatively flat-shaped water droplets and a short drying time, in both the laboratory and nursery...

  3. 59 FR- Prohibited Acts in West Little and North Fork Owyhee National Wild and Scenic River Area

    Science.gov (United States)

    1994-12-15

    ... INTERIOR [OR-030-03-1220-04: GS-043] Prohibited Acts in West Little and North Fork Owyhee National Wild and... and restrictions within the boundaries of the West Little and North Fork Owyhee Rivers as established in the Main, West Little and North Fork Owyhee National Wild and Scenic Rivers Management...

  4. MRX protects fork integrity at protein–DNA barriers, and its absence causes checkpoint activation dependent on chromatin context

    DEFF Research Database (Denmark)

    Bentsen, Iben Bach; Nielsen, Ida; Lisby, Michael

    2013-01-01

    To address how eukaryotic replication forks respond to fork stalling caused by strong non-covalent protein–DNA barriers, we engineered the controllable Fob-block system in Saccharomyces cerevisiae. This system allows us to strongly induce and control replication fork barriers (RFB) at their natural...

  5. Response of ecosystem carbon fluxes to drought events in a poplar plantation in Northern China

    Science.gov (United States)

    Jie Zhou; Zhiqiang Zhang; Ge Sun; Xianrui Fang; Tonggang Zha; Steve McNulty; Jiquan Chen; Ying Jin; Asko Noormets

    2013-01-01

    Poplar plantations are widely used for timber production and ecological restoration in northern China,a region that experiences frequent droughts and water scarcity. An open-path eddy-covariance (EC)system was used to continuously measure the carbon,water,and energy fluxes in a poplar plantation during the growing season (i.e., April–October)over the period 2006–2008...

  6. VIBRATION MEASUREMENT OF DOUBLE-ENDED TUNING FORKS RESONATOR

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    To enhance the coherence and reliability of the double-ended tuning fork (DETF) resonator, a measurement system of resonator vibration is presented to check its dynamic characteristics. Laser Doppler techniques are utilized and the relation between DETF vibration velocity and output current of photodetector is obtained. Resonator vibration equation is also analyzed and its driving power only depends on the direct current bias voltage and the amplitude of alternative voltage. Furthermore, a special resonator driving control circuit based on measurement is designed. The amplitude and frequency of circuit is controlled by a computer so that highly stable and strong driving signal can be output. Experiments on driving and measuring double-ended tuning fork have been done. The frequency of driving signal is 8 kHz and the peak-to-peak value of driving voltage is 140 V. Experimental results indicate resonator can be drived stably by driving control circuit and dynamic characteristics of DETF may be measured in real time.

  7. Environment of deposition of Clear Fork Formation: Yoakum County, Texas

    Energy Technology Data Exchange (ETDEWEB)

    Moore, B.K.

    1987-05-01

    The Clear Fork Formation is Permian (Leonardian) in age and constitutes a major oil-bearing unit in the Permian basin of west Texas. In Yoakum County, west Texas, the upper Clear Fork carbonates record a subtidal upward-shoaling sequence of deposition. A small bryozoan-algal patch reef is situated within these carbonates near the southern edge of the North Basin platform. The reef is completely dolomitized, but paramorphic replacement has facilitated a study of the paleoecology, lateral variations, and community succession within this buildup. Build-ups of this type are scarcely known in strata of Permian age. The reef was apparently founded on a coquina horizon at the base of the buildup. The reef apparently had a low-relief, dome-shaped morphology. The trapping and binding of sediment by bryozoa appear to have been the main constructional process. A significant role was also played by encrusting forams and the early precipitation of submarine cements, both of which added rigidity to the structure. The reef also contains a low-diversity community of other invertebrates. Algal constituents predominate at the basinward edge of the buildup. The reef was formed entirely subaqueously on a broad, relatively shallow tropical marine carbonate shelf environment. An understanding of the lithofacies distribution and paragenesis within this sequence will provide information on porosity variations and the nature and distribution of permeability barriers. Such information is useful in reservoir modeling studies and for secondary recovery techniques in shelf-edge carbonate reservoirs of this type.

  8. Evaluation of soil nutrient status in poplar forest soil by soil nutrient systematic approach

    Institute of Scientific and Technical Information of China (English)

    YUChang-bing; CHENFang; LUOZhi-jian; CHENWei-wen

    2004-01-01

    A study was conducted to evaluate the soil nutrient status of poplar plantation by Soil Nutrient Systematic Approach(SNSA) in Jianghan Plain, Hubei Province, China. Soil physiochemical properties were analyzed in laboratory through collection soil samples of study site. Ten treatments of application different fertilizers were designed such as CK, optimum treatment (N, P,K, Zn), -N(P, K, Zn), -P(N, K, Zn), -K(N, P, Zn), +Mg(N, P, K, Zn, Mg), -Zn (N,P,K), +2P(N, 2P, K, Zn), +2K(N, P, 2K, Zn), and 2N+2P+2K(2N, 2P, 2K, Zn) for field experiment to test the effect on tree height, diameter (DBH) growth, and dry weight of poplar.The results showed that there was no significant difference in tree heights between treatments with different fertilizers, diameter growth of poplar trees in treatments of lack of N and Zn was significantly slower than that of trees in optimum treatment, and dry weight of poplar dropped significantly for treatment of CK as well as treatments without application N and Zn. It is concluded that N and Zn were main limiting factor for poplar growth. Results from laboratory analysis and field experiment were uniform perfectly, which proved that SNSA was reliable in evaluating soil nutrient status of poplar plantation.

  9. Feasibility of poplar foliages as bio-monitors for organochlorine pesticides in air

    Institute of Scientific and Technical Information of China (English)

    DAI TianYou; ZHU XiaoHua; WANG Wei; MENG Wei; YU YunJiang; LI FaSheng; YANG YongLiang; LIU Feng

    2009-01-01

    The feasibility of poplar (P. tomentosa) foliages as passive biomonitors for organochlorine pesticides In air was explored. The accumulation patterns of poplar foliages for HCHs, DDTs and HCB were similar, the amount of HCHs, DDTs and HCB increased with foliage growth in spring, and decreased thereafter. There was no obvious distinction in the accumulation styles between the adult leaf and the leaf-litter. This accumulation pattern is likely related to the growing process of the poplar foliage, and was ob-served for the first time in our work, giving an evidence for the "bud burst effect" in plants. The tech-nical HCH and DDT were used largely in history and not used in recent years, but there was a little usage of lindane and new input of o,p'DDT in recent years, and dicofol usage may be the main source of o,p'-DDT. Concentrations of HCHs, DDTs and HCB in poplar foliages were similar to those in pine needles at the corresponding period, and there is a positive strong correlation between OCP concen-tration data of two kinds of trees. It presents no difference in the accumulation style between two kinds of trees. The level of OCPs in the poplar foliage reflected the pollution status of OCPs in air. The result of this work showed that the poplar foliage can be used as the bio-monitor of OCPs in air.

  10. The poplar basic helix-loop-helix transcription factor BEE3 – Like gene affects biomass production by enhancing proliferation of xylem cells in poplar

    Energy Technology Data Exchange (ETDEWEB)

    Noh, Seol Ah, E-mail: s6022029@korea.ac.kr; Choi, Young-Im, E-mail: yichoi99@forest.go.kr; Cho, Jin-Seong, E-mail: jinsung3932@gmail.com; Lee, Hyoshin, E-mail: hslee@forest.go.kr

    2015-06-19

    Brassinosteroids (BRs) play important roles in many aspects of plant growth and development, including regulation of vascular cambium activities and cell elongation. BR-induced BEE3 (brassinosteroid enhanced expression 3) is required for a proper BR response. Here, we identified a poplar (Populus alba × Populus glandulosa) BEE3-like gene, PagBEE3L, encoding a putative basic helix-loop-helix (bHLH)-type transcription factor. Expression of PagBEE3L was induced by brassinolide (BL). Transcripts of PagBEE3L were mainly detected in stems, with the internode having a low level of transcription and the node having a relatively higher level. The function of the PagBEE3L gene was investigated through phenotypic analyses with PagBEE3L-overexpressing (ox) transgenic lines. This work particularly focused on a potential role of PagBEE3L in stem growth and development of polar. The PagBEE3L-ox poplar showed thicker and longer stems than wild-type plants. The xylem cells from the stems of PagBEE3L-ox plants revealed remarkably enhanced proliferation, resulting in an earlier thickening growth than wild-type plants. Therefore, this work suggests that xylem development of poplar is accelerated in PagBEE3L-ox plants and PagBEE3L plays a role in stem growth by increasing the proliferation of xylem cells to promote the initial thickening growth of poplar stems. - Highlights: • We identify the BEE3-like gene form hybrid poplar (Populus alba × Populus glandulosa). • We examine effects of overexpression of PagBEE3L on growth in poplar. • We found that 35S:BEE3L transgenic plants showed more rapid growth than wild-type plants. • BEE3L protein plays an important role in the development of plant stem.

  11. Dechlorination of PCBs in the rhizosphere of switchgrass and poplar.

    Science.gov (United States)

    Meggo, Richard E; Schnoor, Jerald L; Hu, Dingfei

    2013-07-01

    Polychlorinated biphenyl (PCB) congeners (PCB 52, 77, and 153) singly and in mixture were spiked and aged in soil microcosms and subsequently planted with switchgrass (Panicum virgatum) or poplar (Populus deltoids x nigra DN34). The planted reactors showed significantly greater reductions in PCB parent compounds when compared to unplanted systems after 32 weeks. There was evidence of reductive dechlorination in both planted and unplanted systems, but the planted microcosms with fully developed roots and rhizospheres showed greater biotransformation than the unplanted reactors. These dechlorination products accounted for approximately all of the molar mass of parent compound lost. Based on the transformation products, reductive dechlorination pathways are proposed for rhizospheric biotransformation of PCB 52, 77, and 153. This is the first report of rhizosphere biotransformation pathways for reductive dechlorination in marginally aerobic, intermittently flooded soil as evidenced by a mass balance on transformation products.

  12. Aboveground dendromass allometry of hybrid black poplars for energy crops

    Directory of Open Access Journals (Sweden)

    Tatiana Stankova

    2016-06-01

    Full Text Available Cultivation of energy crops is concerned with estimation of the total lignified biomass (dendromass production, which is based on the plantation density and individual plant dendromass. The main objective of this study was to investigate the allometry of aboveground leafless biomass of juvenile black poplar hybrids (Populus deltoides x P. nigra , traditionally used for timber and cellulose production, and to derive generic allometric models for dendromass prediction, relevant to energy crop cultivation in Bulgaria. The study material comprised a variety of growth sites, tree ages and clones, specific to poplar plantings in Bulgaria. We used three principal quantitative predictors: diameter at breast height, total tree height and mean stand (stock height. The models were not differentiated by clone, because the black poplar hybrids tested were not equally represented in the data, and the inclusion of tree age as a predictor variable seemed unreliable, because of the significant, up to 3 years, variation, which was possible within the narrow age range investigated. We defined the mean stand (stock height as a composite quantitative variable, which reflected the interaction between the time since planting (age, site quality and the intrinsic growth potential. Stepwise and backward multiple regression analyses were applied to these quantitative variables and their products and sets of adequacy and goodnessof-fit criteria were used to derive individual biomass models for stem and branches. Then we developed compatible additive systems of models for stem, branch and total lignified biomass in log-transformed form. Finally, the prediction data were back-transformed, applying correction for bias, and were cross-validated. Three systems of generic equations were derived to enable flexible model implementation. Equation system M1 proposes a stem biomass model based on tree and stand heights and stem diameter, and a model for

  13. Wood Microstructure Effects on Chinese White Poplar Dyeing

    Institute of Scientific and Technical Information of China (English)

    DUANXinfang; BAOFucheng

    2004-01-01

    In order to study the influence of wood microstructure on wood dyeing, eleven parameters of wood microstructure and 5 parameters of wood dyeing effects for 34 pieces of wood boards from 5 trees of Chinese white poplar (Populus tornentosa) were determined and the multiple regression analysis between the factors of wood microstructures and the parameters of wood dyeing effects were made. The regression results show that each variable of wood dyeing effects has higher relationship with wood microstructures,and multiple correlation coefficients between each variable of wood dyeing effects and wood microstructures are 0.483 6-0.799 8. The main factors of wood microstructures influencing wood dyeing of Chinese whitep oplar are proportion of wood ray, proportion of vessel and proportion of wood fiber according to comparing the standardized regression coefficients of multiple regression equation.

  14. Quantification of carbon sources for isoprene emission in poplar leaves

    Science.gov (United States)

    Kreutzwieseer, J.; Graus, M.; Schnitzler, J. P.; Heizmann, U.; Rennenberg, H.; Hansel, A.

    2003-12-01

    Isoprene is the most abundant volatile organic compound emitted by plants and in particular by trees. Current interest in understanding its biosynthesis in chloroplasts is forced by the important role isoprene plays in atmospheric chemistry. Leaf isoprene formation is closely linked to photosynthesis by a dynamic use of recently fixed photosynthetic precursors in the chloroplast. Under steady state conditions in [13C]CO2 atmosphere approximately 75 % of isoprene became labeled within minutes. The source of unlabeled C is suggested to be of extra-chloroplastidic and/or from starch degradation. In order to test whether these alternative carbon sources - leaf internal C-pools and xylem-transported carbohydrates, contribute to leaf isoprene formation in poplar (Populus tremula x P. alba) on-line proton-transfer-reaction-mass spectrometry (PTR-MS) was used to follow 13C-labeling kinetics.

  15. Aboveground dendromass allometry of hybrid black poplars for energy crops

    Directory of Open Access Journals (Sweden)

    Tatiana Stankova

    2016-06-01

    Full Text Available Cultivation of energy crops is concerned with estimation of the total lignified biomass (dendromass production, which is based on the plantation density and individual plant dendromass. The main objective of this study was to investigate the allometry of aboveground leafless biomass of juvenile black poplar hybrids (Populus deltoides x P. nigra , traditionally used for timber and cellulose production, and to derive generic allometric models for dendromass prediction, relevant to energy crop cultivation in Bulgaria. The study material comprised a variety of growth sites, tree ages and clones, specific to poplar plantings in Bulgaria. We used three principal quantitative predictors: diameter at breast height, total tree height and mean stand (stock height. The models were not differentiated by clone, because the black poplar hybrids tested were not equally represented in the data, and the inclusion of tree age as a predictor variable seemed unreliable, because of the significant, up to 3 years, variation, which was possible within the narrow age range investigated. We defined the mean stand (stock height as a composite quantitative variable, which reflected the interaction between the time since planting (age, site quality and the intrinsic growth potential. Stepwise and backward multiple regression analyses were applied to these quantitative variables and their products and sets of adequacy and goodnessof-fit criteria were used to derive individual biomass models for stem and branches. Then we developed compatible additive systems of models for stem, branch and total lignified biomass in log-transformed form. Finally, the prediction data were back-transformed, applying correction for bias, and were cross-validated. Three systems of generic equations were derived to enable flexible model implementation. Equation system M1 proposes a stem biomass model based on tree and stand heights and stem diameter, and a model for

  16. Seedling test and genetic analysis of white poplar hybrid clones

    Institute of Scientific and Technical Information of China (English)

    LI Bo; JIANG Xi-bing; ZHANG You-hui; ZHANG Zhi-yi; LI Shan-wen; AN Xin-min

    2008-01-01

    Cross breeding strategies are very efficient for gaining new and superior genotypes. Ninety-eight new white poplar hybrid clones produced from 12 cross combinations within the Section Leuce Duby were studied using genetic analysis and seedling tests. We exploited the wide variation that exists in this population and found that the differences among diameter at breast height (DBH), root collar diameter (RCD) and height (H) were statistically extremely significant. The repeatability of clones of these measured traits ranged from 0.947-0.967, which indicated that these Waits were strongly controlled by genetic factors. Based on multiple comparisons, a total of 25 clones showed better performance in growth than the conlrol cultivar. These 25 clones were from six different cross combinations, which can guarantee a larger genetic background for future new clone promotion projects. This study provides a simple overview on these clones and can guide us to carry out subsequent selection plans.

  17. Analysis of 4,664 high-quality sequence-finished poplar full-length

    Energy Technology Data Exchange (ETDEWEB)

    Ralph, S. [University of British Columbia, Vancouver; Gunter, Lee E [ORNL; Tuskan, Gerald A [ORNL; Douglas, Carl [University of British Columbia, Vancouver; Holt, Robert A. [Genome Sciences Centre, Vancouver, BC, Canada; Jones, Steven [Genome Sciences Centre, Vancouver, BC, Canada; Marra, Marco [Genome Sciences Centre, Vancouver, BC, Canada; Bohlmann, J. [University of British Columbia, Vancouver

    2008-01-01

    The genus Populus includes poplars, aspens and cottonwoods, which will be collectively referred to as poplars hereafter unless otherwise specified. Poplars are the dominant tree species in many forest ecosystems in the Northern Hemisphere and are of substantial economic value in plantation forestry. Poplar has been established as a model system for genomics studies of growth, development, and adaptation of woody perennial plants including secondary xylem formation, dormancy, adaptation to local environments, and biotic interactions. As part of the poplar genome sequencing project and the development of genomic resources for poplar, we have generated a full-length (FL)-cDNA collection using the biotinylated CAP trapper method. We constructed four FLcDNA libraries using RNA from xylem, phloem and cambium, and green shoot tips and leaves from the P. trichocarpa Nisqually-1 genotype, as well as insect-attacked leaves of the P. trichocarpa x P. deltoides hybrid. Following careful selection of candidate cDNA clones, we used a combined strategy of paired end reads and primer walking to generate a set of 4,664 high-accuracy, sequence-verified FLcDNAs, which clustered into 3,990 putative unique genes. Mapping FLcDNAs to the poplar genome sequence combined with BLAST comparisons to previously predicted protein coding sequences in the poplar genome identified 39 FLcDNAs that likely localize to gaps in the current genome sequence assembly. Another 173 FLcDNAs mapped to the genome sequence but were not included among the previously predicted genes in the poplar genome. Comparative sequence analysis against Arabidopsis thaliana and other species in the non-redundant database of GenBank revealed that 11.5% of the poplar FLcDNAs display no significant sequence similarity to other plant proteins. By mapping the poplar FLcDNAs against transcriptome data previously obtained with a 15.5 K cDNA microarray, we identified 153 FLcDNA clones for genes that were differentially expressed in

  18. Lead Tolerance and Accumulation in White Poplar Cultivated In Vitro

    Directory of Open Access Journals (Sweden)

    Branislav Kovačević

    2013-06-01

    Full Text Available Background and Purpose: This paper analyses the lead tolerance and accumulation in white poplar genotypes in vitro, in order to optimize genotype evaluation and other procedures in their implementation in phytoremediation projects and landscaping in areas endangered by lead accumulation. Material and Methods: The lead tolerance and accumulation of five white poplar genotypes after 35 days in vitro cultivation on media supplemented with lead was examined. The following Pb(NO32 concentrations were used: 0, 10-6, 10-5, 10-4 and 10-3 M. Tolerance analysis (described by tolerance indices was based on morphological parameters, biomass accumulation and the content of photosynthetic pigments, while lead accumulation was described by shoot lead accumulation and shoot lead content. Results and Conclusions: The chosen lead concentrations appeared not to be lethal. Moreover, the obtained results showed that the tested lead concentrations had a positive effect on: number of formed roots, shoot moisture content and shoot height. The best differentiation among the examined genotypes was gained by the tolerance index based on the shoot height on 10-4 M Pb(NO32. The shoot lead accumulation and shoot lead content significantly increased on 10-4 and 10-3 M Pb(NO32 media. Thus, the concentration of 10-4 M Pb(NO32 is recommended for further research. Two examined genotypes of horticultural value (LCM and LBM achieved a significantly higher lead shoot content compared to the wide spread genotype “Villafranca” (almost 200% and 125% higher, respectively.

  19. Replication forks reverse at high frequency upon replication stress in Physarum polycephalum.

    Science.gov (United States)

    Maric, Chrystelle; Bénard, Marianne

    2014-12-01

    The addition of hydroxyurea after the onset of S phase allows replication to start and permits the successive detecting of replication-dependent joint DNA molecules and chicken foot structures in the synchronous nuclei of Physarum polycephalum. We find evidence for a very high frequency of reversed replication forks upon replication stress. The formation of these reversed forks is dependent on the presence of joint DNA molecules, the impediment of the replication fork progression by hydroxyurea, and likely on the propensity of some replication origins to reinitiate replication to counteract the action of this compound. As hydroxyurea treatment enables us to successively detect the appearance of joint DNA molecules and then of reversed replication forks, we propose that chicken foot structures are formed both from the regression of hydroxyurea-frozen joint DNA molecules and from hydroxyurea-stalled replication forks. These experiments underscore the transient nature of replication fork regression, which becomes detectable due to the hydroxyurea-induced slowing down of replication fork progression.

  20. Middle East food safety perspectives.

    Science.gov (United States)

    Idriss, Atef W; El-Habbab, Mohammad S

    2014-08-01

    Food safety and quality assurance are increasingly a major issue with the globalisation of agricultural trade, on the one hand, and intensification of agriculture, on the other. Consumer protection has become a priority in policy-making amongst the large economies of the Middle East and North Africa (MENA) countries following a number of food safety incidents. To enhance food safety, it is necessary to establish markets underpinned by knowledge and resources, including analysis of international rejections of food products from MENA countries, international laboratory accreditation, improved reporting systems and traceability, continued development and validation of analytical methods, and more work on correlating sensory evaluation with analytical results. MENA countries should develop a national strategy for food safety based on a holistic approach that extends from farm-to-fork and involves all the relevant stakeholders. Accordingly, food safety should be a regional programme, raising awareness among policy- and decision-makers of the importance of food safety and quality for consumer protection, food trade and economic development.

  1. Interpreting genotype‐by‐environment interaction for biomass production in hybrid poplars under short‐rotation coppice in Mediterranean environments

    National Research Council Canada - National Science Library

    Sixto, Hortensia; Gil, Paula M; Ciria, Pilar; Camps, Francesc; Cañellas, Isabel; Voltas, Jordi

    2016-01-01

    ...‐rotation coppice poplar plantations. Hybrid poplars are grown for biomass production under a wide range of climatic and edaphic conditions, but their adaptive performance in Mediterranean areas remains poorly characterized...

  2. Ovipositional preference and larval performance of poplar defoliator,Clostera restitura on different poplar clones in north-western India

    Institute of Scientific and Technical Information of China (English)

    Gurmail Singh; K.S. Sangha

    2012-01-01

    We evaluated ten poplar clones (G-3,G-48,L-50/88,L154/84,L-156/89,S7C8,S7C15.WSL-22,WSL-29 and Uday) for ovipositional preference and larval performance of Clostera restitura.Female moths did not show any preference with respect to clones for oviposition.Significant differences were observed for number of eggs laid on different plant parts.C.restitura laid eggs in clusters,preferably on upper surface of leaf and size of the egg cluster varied from 15 to 167 eggs.Clones varied for their relative resistance and susceptibility to C.restitura.L-50/88; L-156/89 were identified as most resistant clone based on minimum leaf consumption,whereas S7C15 was found to be most susceptible clone to C.restitura.In multiple choice experiments,no feeding preference by C restitura larvae was detected amongst different poplar clones.After initial settlement of larvae on a particular clone,the larvae remained confined to that clone and negligible inter-clonal movement was noticed subsequently.The fresh pupal weight was correlated negatively (r =-0.37) with percentage surface leaf area eaten and positively (r =0.47) with length of larval period,measured on different clones.Relationship between percentage leaf area eaten and length of larval period was negative (r =-0.23).Owing to relative resistance of L50/88 and L-156/89 against C.restitura,these clones can be recommended for plantation in defoliator prone areas in north-western India.

  3. Nutrient Dynamics of Fine Roots in the Mixed Plantation of Poplar and Black Locust

    Institute of Scientific and Technical Information of China (English)

    Zhai Mingpu; Jiang Sannai; Jia Liming

    2006-01-01

    The mixed plantation of poplar (Populus spp.)and black locust (Robinia pseudoacacia) is one of the typical mixed stands with nitrogen-fixing and non-nitrogen-fixing species.Interaction between the two species in the mixed stand is harmonious and productivity is high,making this kind of mixed plantation a very successful pattern on poor sandy sites in north China.In this study,the fine root decomposition of the two species was investigated in the mixed plantation of 27-year-old Canadian poplar (P.canadansis)and 22-year-old black locust on sandy sites along the Chaobai River in Beijing.Mechanism of harmonious interaction between the two species was observed in the view of the nutrient cycle of fine roots.Results showed that:(1) the fine root decomposition of Canadian poplar and black locust trees was different.Concentrations of N,Ca and Mg gradually increased and those of P and K gradually decreased in the fine roots of poplar during the period of decomposition.Concentrations of N,P and K gradually decreased in the fine roots of black locust during decomposition.The speed of nutrient decomposition in mixed fine roots of the two species fell between the speed of the two pure samples.(2) During decomposition,the annual return amount of N,K and Mg in fine roots of black locust was highest,followed by the mixed fine roots of the two species,and then the fine roots of poplar.(3) The increased return amount of N in mixed fine roots could improve the N nutrient condition of poplar trees.The return amount of P in poplar Fine roots was greater than that of black locust,which could improve the P nutrient of black locust trees.The interaction of mutual supplements of N and P nutrient cycle of fine roots between these two species formed.

  4. COMPARISON OF APMP PULP CHARACTERISTICS OF JUVENILE TRIPLOID CHINESE WHITE POPLAR IN SALINE SOIL WITH THAT OF NORMAL 5-YEAR POPLAR

    Institute of Scientific and Technical Information of China (English)

    Hongchun Zou; Guomin Tan; Qun Li; Zimin Zhang

    2004-01-01

    In the paper, differences between the juvenile Triploid Chinese White Poplar TCWP in saline soil and 5-year TCWP in normal soil are compared in terms of their APMP-pulping properties. The results show that the saline planting environment does not show obvious effects on pulping properties of juvenile TCWP.

  5. Chloroplast parameters differ in wild type and transgenic poplars overexpressing gsh1 in the cytosol.

    Science.gov (United States)

    Ivanova, L A; Ronzhina, D A; Ivanov, L A; Stroukova, L V; Peuke, A D; Rennenberg, H

    2009-07-01

    Poplar mutants overexpressing the bacterial genes gsh1 or gsh2 encoding the enzymes of glutathione biosynthesis are among the best-characterised transgenic plants. However, this characterisation originates exclusively from laboratory studies, and the performance of these mutants under field conditions is largely unknown. Here, we report a field experiment in which the wild-type poplar hybrid Populus tremula x P. alba and a transgenic line overexpressing the bacterial gene gsh1 encoding gamma-glutamylcysteine synthetase in the cytosol were grown for 3 years at a relatively clean (control) field site and a field site contaminated with heavy metals. Aboveground biomass accumulation was slightly smaller in transgenic compared to wild-type plants; soil contamination significantly decreased biomass accumulation in both wild-type and transgenic plants by more than 40%. Chloroplasts parameters, i.e., maximal diameter, projection area and perimeter, surface area and volume, surface/volume ratio and a two-dimensional form coefficient, were found to depend on plant type, leaf tissue and soil contamination. The greatest differences between wild and transgenic poplars were observed at the control site. Under these conditions, chloroplast sizes in palisade tissue of transgenic poplar significantly exceeded those of the wild type. In contrast to the wild type, palisade chloroplast volume exceeded that of spongy chloroplasts in transgenic poplars at both field sites. Chlorophyll content per chloroplast was the same in wild and transgenic poplars. Apparently, the increase in chloroplast volume was not connected to changes in the photosynthetic centres. Chloroplasts of transgenic poplar at the control site were more elongated in palisade cells and close to spherical in spongy mesophyll chloroplasts. At the contaminated site, palisade and spongy cell chloroplasts of leaves from transgenic trees and the wild type were the same shape. Transgenic poplars also had a smaller chloroplast

  6. Physical Habitat Characteristics on the North Fork Shenandoah River, VA in 2002-2003

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This dataset was collected with a PLGR government-issue GPS, and through manual measurement in the field. Points were gathered while canoeing along the North Fork...

  7. Geographic distribution of mercury in asiatic clams, Corbicuia plumihea, from the North Fork Holston River, Virginia

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — A study was conducted quantifying mercury concentrations in the Asiatic clam, Corbicula fluminea, from the North Fork Holston River, Virginia. The purpose of this...

  8. Assessment of contaminant loads at the Deep Fork National Wildlife Refuge

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Fish, sediment, and benthic macroinvertebrate communities were sampled on and near the Deep Fork National Wildlife Refuge, Okmulgee County, Oklahoma. Collections...

  9. The Frequency Dependence of the Added Mass of Quartz Tuning Fork Immersed in He II

    Science.gov (United States)

    Gritsenko, I.; Klokol, K.; Sokolov, S.; Sheshin, G.

    2016-11-01

    We measured the dependences of the resonance frequency of tuning forks immersed in liquid helium at T = 0.365 K in the pressure interval from saturated vapor pressure to 24.8 atm. The quartz tuning forks have been studied with different resonance frequencies of 6.65, 8.46, 12.1, 25.0 and 33.6 kHz in vacuum. The measurements were taken in the laminar flow regime. The experimental data allow us to determine the added mass of a quartz tuning fork in He II. It was found that the added mass per unit length of the prong fork is frequency dependent. Some possible qualitative explanations for such dependence are proposed. In addition, we observed, at T = 0.365 K, the changes in added mass with pressure according to the pressure dependence of He II density.

  10. The DNA helicase Pfh1 promotes fork merging at replication termination sites to ensure genome stability

    Science.gov (United States)

    Steinacher, Roland; Osman, Fekret; Dalgaard, Jacob Z.; Lorenz, Alexander; Whitby, Matthew C.

    2012-01-01

    Bidirectionally moving DNA replication forks merge at termination sites composed of accidental or programmed DNA–protein barriers. If merging fails, then regions of unreplicated DNA can result in the breakage of DNA during mitosis, which in turn can give rise to genome instability. Despite its importance, little is known about the mechanisms that promote the final stages of fork merging in eukaryotes. Here we show that the Pif1 family DNA helicase Pfh1 plays a dual role in promoting replication fork termination. First, it facilitates replication past DNA–protein barriers, and second, it promotes the merging of replication forks. A failure of these processes in Pfh1-deficient cells results in aberrant chromosome segregation and heightened genome instability. PMID:22426535

  11. Theoretical model and optimization of a novel temperature sensor based on quartz tuning fork resonators

    Science.gov (United States)

    Jun, Xu; Bo, You; Xin, Li; Juan, Cui

    2007-12-01

    To accurately measure temperatures, a novel temperature sensor based on a quartz tuning fork resonator has been designed. The principle of the quartz tuning fork temperature sensor is that the resonant frequency of the quartz resonator changes with the variation in temperature. This type of tuning fork resonator has been designed with a new doubly rotated cut work at flexural vibration mode as temperature sensor. The characteristics of the temperature sensor were evaluated and the results sufficiently met the target of development for temperature sensor. The theoretical model for temperature sensing has been developed and built. The sensor structure was analysed by finite element method (FEM) and optimized, including tuning fork geometry, tine electrode pattern and the sensor's elements size. The performance curve of output versus measured temperature is given. The results from theoretical analysis and experiments indicate that the sensor's sensitivity can reach 60 ppm °C-1 with the measured temperature range varying from 0 to 100 °C.

  12. Deep Fork National Wildlife Refuge: Comprehensive Conservation Plan 1999-2009 and Environmental Assessment

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This Comprehensive Conservation Plan (CCP) was written to guide management on Deep Fork NWR for the next 15 years. This plan outlines the Refuge vision and purpose...

  13. Sapflow of hybrid poplar (Populus nigra L. x P. maximowiczii A. Henry 'NM6') during phytoremediation of landfill leachate

    Science.gov (United States)

    Ronald S., Jr. Zalesny; Adam H. Wiese; Edmund O. Bauer; Don E. Riemenschneider

    2006-01-01

    Poplars are ideal for phytoremediation because of their high water usage, fast growth, and deep root systems. We measured in 2002 and 2003 the sapflow of hybrid poplars (Populus nigra L. x P. maximowiczii A. Henry 'NM6') planted in 1999 for phytoremediation of a landfill in Rhinelander, WI, USA (45.6?N, 89.4?W).

  14. Impacts of transgenic poplar-cotton agro-ecosystems upon target pests and non-target insects under field conditions.

    Science.gov (United States)

    Zhang, D J; Liu, J X; Lu, Z Y; Li, C L; Comada, E; Yang, M S

    2015-07-27

    Poplar-cotton agro-ecosystems are the main agricultural planting modes of cotton fields in China. With increasing acres devoted to transgenic insect-resistant poplar and transgenic insect-resistant cotton, studies examining the effects of transgenic plants on target and non-target insects become increasingly important. We systematically surveyed populations of both target pests and non-target insects for 4 different combinations of poplar-cotton eco-systems over 3 years. Transgenic Bt cotton strongly resisted the target insects Fall webworm moth [Hyphantria cunea (Drury)], Sylepta derogata Fabrieius, and American bollworm (Heliothis armigera), but no clear impact on non-target insect cotton aphids (Aphis gossypii). Importantly, intercrops containing transgenic Pb29 poplar significantly increased the inhibitory effects of Bt cotton on Fall webworm moth in ecosystem IV. Highly resistant Pb29 poplar reduced populations of the target pests Grnsonoma minutara Hubner and non-target insect poplar leaf aphid (Chaitophorus po-pulialbae), while Fall webworm moth populations were unaffected. We determined the effects of Bt toxin from transgenic poplar and cotton on target and non-target pests in different ecosystems of cotton-poplar intercrops and identified the synergistic effects of such combinations toward both target and non-target insects.

  15. Fertilization effects on biomass production, nutrient leaching and budgets in four stand development stages of short rotation forest poplar

    DEFF Research Database (Denmark)

    Georgiadis, Petros; Nielsen, Anders Tærø; Stupak, Inge

    2017-01-01

    Abstract Dedicated energy poplar plantations have a high biomass production potential in temperate regions, which may be further increased by improved management practices. The aim of this study was to investigate the effects of fertilization on short rotation forest poplar established on former...

  16. Efficient Agrobacterium-Mediated Transformation of Hybrid Poplar Populus davidiana Dode × Populus bollena Lauche

    Directory of Open Access Journals (Sweden)

    Xue Han

    2013-01-01

    Full Text Available Poplar is a model organism for high in vitro regeneration in woody plants. We have chosen a hybrid poplar Populus davidiana Dode × Populus bollena Lauche. By optimizing the Murashige and Skoog medium with (0.3 mg/L 6-benzylaminopurine and (0.08 mg/L naphthaleneacetic acid, we have achieved the highest frequency (90% for shoot regeneration from poplar leaves. It was also important to improve the transformation efficiency of poplar for genetic breeding and other applications. In this study, we found a significant improvement of the transformation frequency by controlling the leaf age. Transformation efficiency was enhanced by optimizing the Agrobacterium concentration (OD600 = 0.8–1.0 and an infection time (20–30 min. According to transmission electron microscopy observations, there were more Agrobacterium invasions in the 30-day-old leaf explants than in 60-day-old and 90-day-old explants. Using the green fluorescent protein (GFP marker, the expression of MD–GFP fusion proteins in the leaf, shoot, and root of hybrid poplar P. davidiana Dode × P. bollena Lauche was visualized for confirmation of transgene integration. Southern and Northern blot analysis also showed the integration of T-DNA into the genome and gene expression of transgenic plants. Our results suggest that younger leaves had higher transformation efficiency (~30% than older leaves (10%.

  17. [Canopy conductance characteristics of poplar in agroforestry system in west Liaoning Province of Northeast China].

    Science.gov (United States)

    Li, Zheng; Niu, Li-Hua; Yuan, Feng-Hui; Guan, De-Xin; Wang, An-Zhi; Jin, Chang-Jie; Wu, Jia-Bing

    2012-11-01

    By using Granier' s thermal dissipation probe, the sap flow of poplar in a poplar-maize agroforestry system in west Liaoning was continuously measured, and as well, the environmental factors such as air temperature, air humidity, net radiation, wind speed, soil temperature, and soil moisture content were synchronically measured. Based on the sap flow data, the canopy conductance of poplar was calculated with simplified Penman-Monteith equation. In the study area, the diurnal variation of poplar' s canopy conductance showed a "single peak" curve, whereas the seasonal variation showed a decreasing trend. There was a negative logarithm relationship between the canopy conductance and vapor pressure deficit, with the sensitivity of canopy conductance to vapor pressure deficit change decreased gradually from May to September. The canopy conductance had a positive relationship with solar radiation. In different months, the correlation degree of canopy conductance with environmental factors differed. The vapor pressure deficit in the whole growth period of poplar was the most significant environmental factor correlated with the canopy conductance.

  18. Obtaining the transgenic poplars with low lignin content through down-regulation of 4CL

    Institute of Scientific and Technical Information of China (English)

    JIA Caihong; ZHAO Huayan; WANG Hongzhi; XING Zhifeng; DU Kejiu; SONG Yanru; WEI Jianhua

    2004-01-01

    The antisense 4CL (4-coumarate: CoA ligase) gene was transformed into triploid Chinese white poplar (Populus tomentosa) mediated by Agrobacterium tumefaciens. PCR and Southern blot analysis indicated that antisense 4CL gene had been integrated into the genome of the transgenic Chinese white poplars. The antisense gene had also been expressed, which was indicated by RT-PCR and Western analysis. Klason lignin content assay showed that repression of 4CL expression could result in remarkable reduction of lignin content in transgenic poplars, with most reduction of 41.73% compared with that of wild type in this paper. But there is no significant difference in holocellulose content between trans- genic and wild poplars. We considered that 4CL might not be the metabolism control point between lignin and carbohy- drate biosynthesis. The stems of transgenic poplars displayed red-brown color with different levels after the bark was peeled, while those of untransformed plants were white. No visible differences in growth and development were observed between transgenic and wild plants. Wiesner reaction analysis of the transgenic plant stems with reduced lignin content exhibited red color, while that of untransformed plant was typically purple-red.

  19. In Silico Identification and Characterization of N-Terminal Acetyltransferase Genes of Poplar (Populus trichocarpa

    Directory of Open Access Journals (Sweden)

    Hang-Yong Zhu

    2014-01-01

    Full Text Available N-terminal acetyltransferase (Nats complex is responsible for protein N-terminal acetylation (Nα-acetylation, which is one of the most common covalent modifications of eukaryotic proteins. Although genome-wide investigation and characterization of Nat catalytic subunits (CS and auxiliary subunits (AS have been conducted in yeast and humans they remain unexplored in plants. Here we report on the identification of eleven genes encoding eleven putative Nat CS polypeptides, and five genes encoding five putative Nat AS polypeptides in Populus. We document that the expansion of Nat CS genes occurs as duplicated blocks distributed across 10 of the 19 poplar chromosomes, likely only as a result of segmental duplication events. Based on phylogenetic analysis, poplar Nat CS were assigned to six subgroups, which corresponded well to the Nat CS types (CS of Nat A–F, being consistent with previous reports in humans and yeast. In silico analysis of microarray data showed that in the process of normal development of the poplar, their Nat CS and AS genes are commonly expressed at one relatively low level but share distinct tissue-specific expression patterns. This exhaustive survey of Nat genes in poplar provides important information to assist future studies on their functional role in poplar.

  20. Two Highly Similar Poplar Paleo-subgenomes Suggest an Autotetraploid Ancestor of Salicaceae Plants.

    Science.gov (United States)

    Liu, Yinzhe; Wang, Jinpeng; Ge, Weina; Wang, Zhenyi; Li, Yuxian; Yang, Nanshan; Sun, Sangrong; Zhang, Liwei; Wang, Xiyin

    2017-01-01

    As a model plant to study perennial trees in the Salicaceae family, the poplar (Populus trichocarpa) genome was sequenced, revealing recurrent paleo-polyploidizations during its evolution. A comparative and hierarchical alignment of its genome to a well-selected reference genome would help us better understand poplar's genome structure and gene family evolution. Here, by adopting the relatively simpler grape (Vitis vinifera) genome as reference, and by inferring both intra- and inter-genomic gene collinearity, we produced a united alignment of these two genomes and hierarchically distinguished the layers of paralogous and orthologous genes, as related to recursive polyploidizations and speciation. We uncovered homologous blocks in the grape and poplar genomes and also between them. Moreover, we characterized the genes missing and found that poplar had two considerably similar subgenomes (≤0.05 difference in gene deletion) produced by the Salicaceae-common tetraploidization, suggesting its autotetraploid nature. Taken together, this work provides a timely and valuable dataset of orthologous and paralogous genes for further study of the genome structure and functional evolution of poplar and other Salicaceae plants.

  1. Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

    Science.gov (United States)

    Foster, Adam J; Pelletier, Gervais; Tanguay, Philippe; Séguin, Armand

    2015-01-01

    Diseases of poplar caused by the native fungal pathogen Sphaerulina musiva and related species are of growing concern, particularly with the increasing interest in intensive poplar plantations to meet growing energy demands. Sphaerulina musiva is able to cause infection on leaves, resulting in defoliation and canker formation on stems. To gain a greater understanding of the different responses of poplar species to infection caused by the naturally co-evolved Sphaerulina species, RNA-seq was conducted on leaves of Populus deltoides, P. balsamifera and P. tremuloides infected with S. musiva, S. populicola and a new undescribed species, Ston1, respectively. The experiment was designed to contain the pathogen in a laboratory environment, while replicating disease development in commercial plantations. Following inoculation, trees were monitored for disease symptoms, pathogen growth and host responses. Genes involved in phenylpropanoid, terpenoid and flavonoid biosynthesis were generally upregulated in P. balsamifera and P. tremuloides, while cell wall modification appears to play an important role in the defense of P. deltoides. Poplar defensive genes were expressed early in P. balsamifera and P. tremuloides, but their expression was delayed in P. deltoides, which correlated with the rate of disease symptoms development. Also, severe infection in P. balsamifera led to leaf abscission. This data gives an insight into the large differences in timing and expression of genes between poplar species being attacked by their associated Sphaerulina pathogen.

  2. Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.

    Directory of Open Access Journals (Sweden)

    Adam J Foster

    Full Text Available Diseases of poplar caused by the native fungal pathogen Sphaerulina musiva and related species are of growing concern, particularly with the increasing interest in intensive poplar plantations to meet growing energy demands. Sphaerulina musiva is able to cause infection on leaves, resulting in defoliation and canker formation on stems. To gain a greater understanding of the different responses of poplar species to infection caused by the naturally co-evolved Sphaerulina species, RNA-seq was conducted on leaves of Populus deltoides, P. balsamifera and P. tremuloides infected with S. musiva, S. populicola and a new undescribed species, Ston1, respectively. The experiment was designed to contain the pathogen in a laboratory environment, while replicating disease development in commercial plantations. Following inoculation, trees were monitored for disease symptoms, pathogen growth and host responses. Genes involved in phenylpropanoid, terpenoid and flavonoid biosynthesis were generally upregulated in P. balsamifera and P. tremuloides, while cell wall modification appears to play an important role in the defense of P. deltoides. Poplar defensive genes were expressed early in P. balsamifera and P. tremuloides, but their expression was delayed in P. deltoides, which correlated with the rate of disease symptoms development. Also, severe infection in P. balsamifera led to leaf abscission. This data gives an insight into the large differences in timing and expression of genes between poplar species being attacked by their associated Sphaerulina pathogen.

  3. Evapotranspiration and crop coefficient of poplar and willow short-rotation coppice used as vegetation filter.

    Science.gov (United States)

    Guidi, Werther; Piccioni, Emiliano; Bonari, Enrico

    2008-07-01

    Ten-day evapotranspiration (ETc) and crop coefficient (k(c)) of willow and poplar SRC used as vegetation filter and grown under fertilised (F) and unfertilised (NF) conditions, were determined for two successive growing seasons using volumetric lysimeters. During the first growing season, total ETc observed was, respectively, 620 (NF)-1190 (F)mm in willow and 590 (NF)-725 (F) in poplar. During the second growing season, ETc showed a general increase, mainly in fertilised lysimeters where it ranged between 890 (NF)-1790 mm (F) in willow and 710 (NF)-1100 mm (NF) in poplar. kc reached in both years its maximum between the end of August and the beginning of September. In 2004 maximum kc ranged from 1.25-2.84 in willow and 1.06-1.90 in poplar, whereas in 2005 it ranged from 1.97-5.30 in willow and 1.71-4.28 in poplar. ETc seemed to be strongly correlated to plant development and mainly dependent on its nutritional status rather than on the differences between the species.

  4. Relationship between plant hormone level excreted by ectomycorrhizal fungi and growth of poplar NL-895

    Institute of Scientific and Technical Information of China (English)

    Lei MA; Xiaoqin WU; Ling ZHENG

    2009-01-01

    To explore the effects of plant hormones levels excreted by ectomycorrhizal (ECM) fungi on the growth of poplars, Populus x euramericana cv. NL-895 seedlings were inoculated with nine species of ECM fungi. We investigated the status of ectomycorrhizal formation and the effects of these fungi on poplar growth, and using the HPLC method, we measured the contents of four kinds of plant hormones, indole acetic acid (IAA), zeatin (Z), gibberellin (GA) and abscisic acid (ABA) in both the culture filtrate and the mycelium of these fungi. The results showed that the effects of nine ECM fungi on the growth of poplar NL-895 varied. The inoculated seedlings, whether or not obvious mycorrhizas were developed, grew better than those non-inoculated ones. All nine ectomycorrhizal fungi excreted the four plant hormones, but at different levels. The hormone contents in culture filtrate were higher than that in mycelium, which showed a definite relationship with poplar growth. Significantly, correlation analysis suggested the height and stem diameter of the poplar were positively correlated with zeatin contents in the mycelium, and were negatively correlated with the levels of ABA or IAA in the mycelium.

  5. Poplar MYB115 and MYB134 Transcription Factors Regulate Proanthocyanidin Synthesis and Structure.

    Science.gov (United States)

    James, Amy Midori; Ma, Dawei; Mellway, Robin; Gesell, Andreas; Yoshida, Kazuko; Walker, Vincent; Tran, Lan; Stewart, Don; Reichelt, Michael; Suvanto, Jussi; Salminen, Juha-Pekka; Gershenzon, Jonathan; Séguin, Armand; Constabel, C Peter

    2017-05-01

    The accumulation of proanthocyanidins is regulated by a complex of transcription factors composed of R2R3 MYB, basic helix-loop-helix, and WD40 proteins that activate the promoters of biosynthetic genes. In poplar (genus Populus), MYB134 is known to regulate proanthocyanidin biosynthesis by activating key flavonoid genes. Here, we characterize a second MYB regulator of proanthocyanidins, MYB115. Transgenic poplar overexpressing MYB115 showed a high-proanthocyanidin phenotype and reduced salicinoid accumulation, similar to the effects of MYB134 overexpression. Transcriptomic analysis of MYB115- and MYB134-overexpressing poplar plants identified a set of common up-regulated genes encoding proanthocyanidin biosynthetic enzymes and several novel uncharacterized MYB transcriptional repressors. Transient expression experiments demonstrated the capacity of both MYB134 and MYB115 to activate flavonoid promoters, but only in the presence of a basic helix-loop-helix cofactor. Yeast two-hybrid experiments confirmed the direct interaction of these transcription factors. The unexpected identification of dihydromyricetin in leaf extracts of both MYB115- and MYB134-overexpressing poplar led to the discovery of enhanced flavonoid B-ring hydroxylation and an increased proportion of prodelphinidins in proanthocyanidin of the transgenics. The dramatic hydroxylation phenotype of MYB115 overexpressors is likely due to the up-regulation of both flavonoid 3',5'-hydroxylases and cytochrome b5 Overall, this work provides new insight into the complexity of the gene regulatory network for proanthocyanidin synthesis in poplar. © 2017 American Society of Plant Biologists. All Rights Reserved.

  6. Genetic variation of hydraulic and wood anatomical traits in hybrid poplar and trembling aspen.

    Science.gov (United States)

    Schreiber, Stefan G; Hacke, Uwe G; Hamann, Andreas; Thomas, Barb R

    2011-04-01

    Intensive forestry systems and breeding programs often include either native aspen or hybrid poplar clones, and performance and trait evaluations are mostly made within these two groups. Here, we assessed how traits with potential adaptive value varied within and across these two plant groups. Variation in nine hydraulic and wood anatomical traits as well as growth were measured in selected aspen and hybrid poplar genotypes grown at a boreal planting site in Alberta, Canada. Variability in these traits was statistically evaluated based on a blocked experimental design. We found that genotypes of trembling aspen were more resistant to cavitation, exhibited more negative water potentials, and were more water-use-efficient than hybrid poplars. Under the boreal field test conditions, which included major regional droughts, height growth was negatively correlated with branch vessel diameter (Dv ) in both aspen and hybrid poplars and differences in Dv were highly conserved in aspen trees from different provenances. Differences between the hybrid poplars and aspen provenances suggest that these two groups employ different water-use strategies. The data also suggest that vessel diameter may be a key trait in evaluating growth performance in a boreal environment.

  7. Environmental Assessment: Demolish CASS Switch Stations Buildings 644, 645, 646 at Grand Forks Air Force Base

    Science.gov (United States)

    2006-06-01

    Prairie View Nature Preserve” has been developed to restore a part of the native tallgrass prairie that once was dominant in this region. Plants...grass, and many native wildflower species. The Grand Forks AFB Natural Resources Manager and volunteers installed a butterfly garden in the Prairie ...are characterized as typical prairie potholes found within the northern plains ecoregion. Wetlands on Grand Forks AFB occur frequently in

  8. Environmental Assessment: Demolish Buildings 212, 218, 819, 820 at Grand Forks Air Force Base

    Science.gov (United States)

    2007-01-31

    View Nature Preserve” has been developed to restore a part of the native tallgrass prairie that once was dominant in this region. Plants thriving in...and many native wildflower species. The Grand Forks AFB Natural Resources Manager and volunteers installed a butterfly garden in the Prairie View...characterized as typical prairie potholes found within the northern plains ecoregion. Wetlands on Grand Forks AFB occur frequently in drainage

  9. Take It Slow: can feedback from a smart fork reduce eating speed?

    OpenAIRE

    Sander Hermsen

    2015-01-01

    Background: Reductions in eating rate have been recommended as potential behavioural strategies to prevent and treat overweight [1–4]. Unfortunately, eating rate is difficult to modify, due to its highly automatic nature [5]. Training people to eat more slowly in everyday eating contexts, therefore, requires creative and engaging solutions. Aim: The present study examines the efficacy of a smart fork that helps people to eat more slowly. This adapted fork records eating speed ...

  10. Environmental Assessment: Construct Miscellaneous Services Recreation Area at Grand Forks AFB, North Dakota

    Science.gov (United States)

    2004-03-15

    DATA OS Nov03 1ST AJ< ’IT"’"< ~.CL~ "VVI GRANO FORKS AFB, NORTH DAKOTA A TV Trainin /Misc. Services Recreation/ Land Use Chan e/Mass Parkin NA N...PF(AMC) FY 2004 MILITARY CONSTRUCTION DATA 05 Nov03 AS!" .IlLlA TIONNO lCCAliOH GRANO FORKS AFB. NORTH DAKOTA ATV Trainin /Misc. Services

  11. Environmental Assessment: Armory Addition to CATM with Parking at Grand Forks AFB, North Dakota

    Science.gov (United States)

    2005-07-01

    are tall wheat grass, brome grass, Kentucky bluegrass, sweet clover, and alfalfa. Herbaceous plants include little bluestem, goldenrod, green... wildflower species. Two hundred and fifty five taxa were identified in the ND Natural Heritage Inventory and the BS Bioserve biological inventory update...for Grand Forks Air Force Base. Two rare orchid species are known to exist on Grand Forks AFB, the Large and Small Yellow Lady’s Slipper, identified

  12. The Sound Field around a Tuning Fork and the Role of a Resonance Box

    Science.gov (United States)

    Bogacz, Bogdan F.; Pedziwiatr, Antoni T.

    2015-01-01

    Atypical two-tine tuning fork is barely audible when held vibrating at an arm's length. It is enough, however, to touch its base to a table or, better, to a resonance box and the emitted sound becomes much louder. An inquiring student may pose questions: (1) Why is a bare tuning fork such a weak emitter of sound? (2) What is the role of the…

  13. Environmental Assessment: Construct a CDC Main Entry Addition at Grand Forks Air Force Base

    Science.gov (United States)

    2006-03-01

    Forks County. Pastures, meadows, and other non- cultivated areas create a prairie-land mosaic of grasses, legumes, and wild herbaceous plants...Included in the grasses and legumes vegetation species are tall wheat grass, brome grass, Kentucky bluegrass, sweet clover, and alfalfa . Herbaceous...LAND USE Land use in Grand Forks County consists primarily of cultivated crops with remaining land used for pasture and hay, urban development

  14. Environmental Assessment: Construct Airfield Lighting Vault and Demolish Building 531 at Grand Forks Air Force Base

    Science.gov (United States)

    2007-08-01

    Forks County. Pastures, meadows, and other non- cultivated areas create a prairie-land mosaic of grasses, legumes, and wild herbaceous plants. Included...in the grasses and legumes vegetation species are tall wheat grass, brome grass, Kentucky bluegrass, sweet clover, and alfalfa . Herbaceous plants...These are buildings 313, 606, 703, 704, 705, 706, 707, and 714. 3.9 LAND USE Land use in Grand Forks County consists primarily of cultivated crops

  15. Fabrication of SMD 32.768 kHz tuning fork-type crystals: photolithography and selective etching of an array of quartz tuning fork resonators

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S. [Dept. of Molecular Science and Technology, Ajou Univ., Suwon (Korea); Lee, J.Y.; Park, T.S. [Research and Development Center, Samsung Electro-Mechanics Co., Ltd., Suwon (Korea)

    2001-09-01

    Negative photoresist photolithography was used to etch array of quartz tuning forks for use in Qualcomm trademark mobile station modem (MSM)-3000{sup TM} central processing unit (CPU) chips of code division multiple access (CDMA), personal communication system (PCS), and global system for mobile communication (GSM) units. It was found superior to positive photoresist photolithography. Quartz tuning fork blanks with optimum shock-resistant characteristics were designed using finite element method (FEM) and processing condition was devised for reproducible precision etching of Z-cut quartz wafer into array of tuning forks. Tuning fork pattern was transferred via ordinary photolithographical chromium/quartz glass template using a standard single-sided aligner and subsequent negative photoresist development. Tightly adhering and pinhole-free 600/2000 A chromium/gold mask is coated over the developed photoresist pattern which was subsequently stripped in acetone. This procedure was repeated on the backside of the wafer. With protective metallization area of tuning fork geometry thus formed, etching through quartz wafer was done at 80 C in a {+-} 1.5 C controlled bath containing concentrated solution of ammonium bifluoride to remove unwanted area of the quartz wafer. Surface finish of quartz wafer prior to etching and the quality of quartz crystals used primarily affected the quality of quartz wafer surface finish after quartz etching. At 80 C, selective etching of 100 {mu}m quartz wafer could be effected within 90 min. Reproducible precision selective etching method has thus been established and enables mass production of miniature tuning fork resonators photolithographically. (orig.)

  16. ruvA Mutants that resolve Holliday junctions but do not reverse replication forks.

    Science.gov (United States)

    Baharoglu, Zeynep; Bradley, Alison Sylvia; Le Masson, Marie; Tsaneva, Irina; Michel, Bénédicte

    2008-03-07

    RuvAB and RuvABC complexes catalyze branch migration and resolution of Holliday junctions (HJs) respectively. In addition to their action in the last steps of homologous recombination, they process HJs made by replication fork reversal, a reaction which occurs at inactivated replication forks by the annealing of blocked leading and lagging strand ends. RuvAB was recently proposed to bind replication forks and directly catalyze their conversion into HJs. We report here the isolation and characterization of two separation-of-function ruvA mutants that resolve HJs, based on their capacity to promote conjugational recombination and recombinational repair of UV and mitomycin C lesions, but have lost the capacity to reverse forks. In vivo and in vitro evidence indicate that the ruvA mutations affect DNA binding and the stimulation of RuvB helicase activity. This work shows that RuvA's actions at forks and at HJs can be genetically separated, and that RuvA mutants compromised for fork reversal remain fully capable of homologous recombination.

  17. ruvA Mutants that resolve Holliday junctions but do not reverse replication forks.

    Directory of Open Access Journals (Sweden)

    Zeynep Baharoglu

    2008-03-01

    Full Text Available RuvAB and RuvABC complexes catalyze branch migration and resolution of Holliday junctions (HJs respectively. In addition to their action in the last steps of homologous recombination, they process HJs made by replication fork reversal, a reaction which occurs at inactivated replication forks by the annealing of blocked leading and lagging strand ends. RuvAB was recently proposed to bind replication forks and directly catalyze their conversion into HJs. We report here the isolation and characterization of two separation-of-function ruvA mutants that resolve HJs, based on their capacity to promote conjugational recombination and recombinational repair of UV and mitomycin C lesions, but have lost the capacity to reverse forks. In vivo and in vitro evidence indicate that the ruvA mutations affect DNA binding and the stimulation of RuvB helicase activity. This work shows that RuvA's actions at forks and at HJs can be genetically separated, and that RuvA mutants compromised for fork reversal remain fully capable of homologous recombination.

  18. Mutations in DONSON disrupt replication fork stability and cause microcephalic dwarfism.

    Science.gov (United States)

    Reynolds, John J; Bicknell, Louise S; Carroll, Paula; Higgs, Martin R; Shaheen, Ranad; Murray, Jennie E; Papadopoulos, Dimitrios K; Leitch, Andrea; Murina, Olga; Tarnauskaitė, Žygimantė; Wessel, Sarah R; Zlatanou, Anastasia; Vernet, Audrey; von Kriegsheim, Alex; Mottram, Rachel M A; Logan, Clare V; Bye, Hannah; Li, Yun; Brean, Alexander; Maddirevula, Sateesh; Challis, Rachel C; Skouloudaki, Kassiani; Almoisheer, Agaadir; Alsaif, Hessa S; Amar, Ariella; Prescott, Natalie J; Bober, Michael B; Duker, Angela; Faqeih, Eissa; Seidahmed, Mohammed Zain; Al Tala, Saeed; Alswaid, Abdulrahman; Ahmed, Saleem; Al-Aama, Jumana Yousuf; Altmüller, Janine; Al Balwi, Mohammed; Brady, Angela F; Chessa, Luciana; Cox, Helen; Fischetto, Rita; Heller, Raoul; Henderson, Bertram D; Hobson, Emma; Nürnberg, Peter; Percin, E Ferda; Peron, Angela; Spaccini, Luigina; Quigley, Alan J; Thakur, Seema; Wise, Carol A; Yoon, Grace; Alnemer, Maha; Tomancak, Pavel; Yigit, Gökhan; Taylor, A Malcolm R; Reijns, Martin A M; Simpson, Michael A; Cortez, David; Alkuraya, Fowzan S; Mathew, Christopher G; Jackson, Andrew P; Stewart, Grant S

    2017-04-01

    To ensure efficient genome duplication, cells have evolved numerous factors that promote unperturbed DNA replication and protect, repair and restart damaged forks. Here we identify downstream neighbor of SON (DONSON) as a novel fork protection factor and report biallelic DONSON mutations in 29 individuals with microcephalic dwarfism. We demonstrate that DONSON is a replisome component that stabilizes forks during genome replication. Loss of DONSON leads to severe replication-associated DNA damage arising from nucleolytic cleavage of stalled replication forks. Furthermore, ATM- and Rad3-related (ATR)-dependent signaling in response to replication stress is impaired in DONSON-deficient cells, resulting in decreased checkpoint activity and the potentiation of chromosomal instability. Hypomorphic mutations in DONSON substantially reduce DONSON protein levels and impair fork stability in cells from patients, consistent with defective DNA replication underlying the disease phenotype. In summary, we have identified mutations in DONSON as a common cause of microcephalic dwarfism and established DONSON as a critical replication fork protein required for mammalian DNA replication and genome stability.

  19. Alternatives/action plan report for outfall 17

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-11-01

    This Document contains information pertaining to alternatives/action associated with controlling ammonia entering through outfall 17. This document identifies the location of contaminate source, the ammonia concentration levels entering East Fork Poplar Creek, and the action taken to reduce/eliminate the toxicity problem.

  20. Genomics Mechanisms of Carbon Allocation and Partitioning in Poplar

    Energy Technology Data Exchange (ETDEWEB)

    Kirst, Matias; Peter, Gary; Martin, Timothy

    2009-07-30

    The genetic control of carbon allocation and partitioning in woody perennial plants is poorly understood despite its importance for carbon sequestration. It is also unclear how environmental cues such as nitrogen availability impact the genes that regulate growth, and biomass allocation and wood composition in trees. To address these questions we phenotyped 396 clonally replicated genotypes of an interspecific pseudo-backcross pedigree of Populus for wood composition and biomass traits in above and below ground organs. The loci that regulate growth, carbon allocation and partitioning under two nitrogen conditions were identified, defining the contribution of environmental cues to their genetic control. Fifty-seven quantitative trait loci (QTL) were identified for twenty traits analyzed. The majority of QTL are specific to one of the two nitrogen treatments, demonstrating significant nitrogen-dependent genetic control. A highly significant genetic correlation was observed between plant growth and lignin/cellulose composition, and QTL co-localization identified the genomic position of potential pleiotropic regulators. Gene expression analysis of all poplar genes was also characterized in differentiating xylem, whole-roots and developing leaves of 192 of the segregating population. By integrating the QTL and gene expression information we identified genes that regulate carbon partitioning and several biomass growth related properties. The work developed in this project resulted in the publication of three book chapters, four scientific articles (three others currently in preparation), 17 presentations in international conferences and two provisional patent applications.

  1. Biomass and nitrogen dynamics in an irrigated hybrid poplar plantation

    Energy Technology Data Exchange (ETDEWEB)

    McLaughlin, R.A.

    1985-01-01

    A 3-year study measured the effects of ground cover treatments and nitrogen fertilization on biomass and nitrogen dynamics in an irrigated hybrid poplar (Populus deltoides Bartr. x P. trichocarpa Torr. and Gray, clone NC-9922) plantation in northern Wisconsin. Annually fertilized (112 kg N/ha/yr) and unfertilized plots were either maintained weed-free (bare soil), allowed to revegetate with native weeds, or seeded to birdsfoot trefoil (Lotus corniculatus L.). Trees in bare soil plots responded to fertilization primarily in the third growing season, but total biomass of 3-year-old trees was not increased by annual fertilization. High nitrate-nitrogen concentrations in the soil solution suggested significant leaching in both unfertilized and fertilized bare soil plots in the first growing season, and in fertilized plots the second season. Nitrate-nitrogen concentrations declined sharply in fertilized bare soil plots during the third growing season. Cover crop biomass was greatest in the second year and declined thereafter due to declines in below-ground components. Fertilization increased tree growth in these plots, but cover crop treatments had no effect. Results of this study suggest that, under irrigated conditions, a cover crop can substantially reduce leaching losses of nutrients and serve as a slow-release pool of nitrogen after the trees achieve crown closure. Fertilization is not recommended in these plantations until the second growing season if a cover crop is present and the third growing season if complete weed control is practiced.

  2. Surface Characterization of Plasma-modified Poplar Veneer: Dynamic Wettability

    Directory of Open Access Journals (Sweden)

    Lijuan Tang

    2014-11-01

    Full Text Available The dynamic wettability of plasma-modified poplar veneer was investigated with sessile adhesive droplets using a wetting model. Dynamic contact angle, instantaneous and equilibrium contact angles, and their rates of change (K-value were used to illustrate the dynamic wetting process. The experiment consisted of selecting treatment parameters (type of gas, power that would lead to the increased wettability of wood. Three resin systems, urea-formaldehyde (UF, phenol-formaldehyde (PF, and diphenylmethylene diisocyanate (MDI, were evaluated. Based on the wetting model, the K-value was used to interpret the kinetics of wetting. The higher the K-value, the faster the contact angle reaches equilibrium, and the faster the liquid penetrates and spreads. Therefore, the model was helpful for characterizing the dynamic wettability of wood surfaces modified with different plasma treatments. The K-values of plasma-treated veneer surfaces at different plasma power levels and with different gases (such as O2, N2, Ar, air, and NH3 were 458% to 653% and 332% to 528% higher than those of untreated veneer surfaces, respectively. In addition, the K-values of the three resins on the oxygen plasma-treated veneer surfaces were 38% to 1204% higher than those on the untreated veneer surfaces. Therefore, this method was helpful for characterizing the dynamic wettability of veneer surfaces modified with plasma treatment.

  3. Effect of autohydrolysis on the wettability, absorbility and further alkali impregnation of poplar wood chips.

    Science.gov (United States)

    Xu, Ningpan; Liu, Wei; Hou, Qingxi; Wang, Peiyun; Yao, Zhirong

    2016-09-01

    Autohydrolysis with different severity factors was performed on poplar wood chips prior to pulping, and the wettability, absorbility and the following impregnation of NaOH solution for the poplar wood chips were then investigated. The results showed that after autohydrolysis pretreatment the porosity, shrinkage and fiber saturation point (FSP) of the poplar wood chips were increased, while the surface contact angle decreased as the severity factor was increased. The autohydrolyzed chips absorbed more NaOH in impregnation that resulted in a low NaOH concentration in the bulk impregnation liquor (i.e., the impregnation liquor outside wood chips), while the concentration in the entrapped liquor (i.e., the impregnation liquor inside wood chips) was increased. Autohydrolysis substantially improved the effectiveness of alkali impregnation.

  4. PROPERTIES OF PARALLEL STRAND LUMBER FROM TWO HYBRID POPLAR CLONES USING MELAMINE UREA FORMALDEHYDE ADHESIVE

    Directory of Open Access Journals (Sweden)

    Ramazan Kurt,

    2012-06-01

    Full Text Available Experimental parallel strand lumbers (PSLs were manufactured from fast growing rotary peeled I-214 (Populus x euramericana and I-77/51 (Populus deltoides hybrid poplar clones veneer strands with melamine urea formaldehyde (MUF adhesive. The results showed that hybrid poplar clones can be used in PSLs manufacturing. Physical and mechanical properties of PSLs were affected by clone types. The I-77/51 clone had better properties and was found to be more suitable for PSLs manufacturing compared to the I-214 clone. PSLs properties were higher than those of solid woods (SWs and laminated veneer lumbers (LVLs of the same poplar clones. This increase may be due to materials, densification as a result of high pressure use, and the manufacturing techniques. The degree of contribution of SWs properties to the PSLs properties was lower than that of LVLs. This indicated that factors other than SWs properties played more important roles in the strength increase of PSLs.

  5. Transgenic hybrid poplar for sustainable and scalable production of the commodity/specialty chemical, 2-phenylethanol.

    Directory of Open Access Journals (Sweden)

    Michael A Costa

    Full Text Available Fast growing hybrid poplar offers the means for sustainable production of specialty and commodity chemicals, in addition to rapid biomass production for lignocellulosic deconstruction. Herein we describe transformation of fast-growing transgenic hybrid poplar lines to produce 2-phenylethanol, this being an important fragrance, flavor, aroma, and commodity chemical. It is also readily converted into styrene or ethyl benzene, the latter being an important commodity aviation fuel component. Introducing this biochemical pathway into hybrid poplars marks the beginnings of developing a platform for a sustainable chemical delivery system to afford this and other valuable specialty/commodity chemicals at the scale and cost needed. These modified plant lines mainly sequester 2-phenylethanol via carbohydrate and other covalently linked derivatives, thereby providing an additional advantage of effective storage until needed. The future potential of this technology is discussed. MALDI metabolite tissue imaging also established localization of these metabolites in the leaf vasculature.

  6. Daytime and nighttime wind differentially affects hydraulic properties and thigmomorphogenic response of poplar saplings.

    Science.gov (United States)

    Huang, Ping; Wan, Xianchong; Lieffers, Victor J

    2016-05-01

    This study tested how wind in daytime and nighttime affects hydraulic properties and thigmomorphogenic response of poplar saplings. It shows that wind in daytime interrupted water balance of poplar plants by aggravating cavitation in the stem xylem under high xylem tension in the daytime, reducing water potential in midday and hence reducing gas exchange, including stomatal conductance and CO2 assimilation. The wind blowing in daytime significantly reduced plant growth, including height, diameter, leaf size, leaf area, root and whole biomass, whereas wind blowing in nighttime only caused a reduction in radial and height growth at the early stage compared with the control but decreased height:diameter ratios. In summary, the interaction between wind loading and xylem tension exerted a negative impact on water balance, gas exchanges and growth of poplar plants, and wind in nighttime caused only a small thigmomorphogenic response.

  7. Ultrasonic superlensing jets and acoustic-fork sheets

    Energy Technology Data Exchange (ETDEWEB)

    Mitri, F.G., E-mail: F.G.Mitri@ieee.org

    2017-05-18

    Focusing acoustical (and optical) beams beyond the diffraction limit has remained a major challenge in imaging instruments and systems, until recent advances on “hyper” or “super” lensing and higher-resolution imaging techniques have shown the counterintuitive violation of this rule under certain circumstances. Nonetheless, the proposed technologies of super-resolution acoustical focusing beyond the diffraction barrier require complex tools such as artificially engineered metamaterials, and other hardware equipment that may not be easily synthesized or manufactured. The present contribution therefore suggests a simple and reliable method of using a sound-penetrable circular cylinder lens illuminated by a nonparaxial Gaussian acoustical sheet (i.e. finite beam in 2D) to produce non-evanescent ultrasonic superlensing jets (or bullets) and acoustical ‘snail-fork’ shaped wavefronts with limited diffraction. The generalized (near-field) scattering theory for acoustical sheets of arbitrary wavefronts and incidence is utilized to synthesize the incident beam based upon the angular spectrum decomposition method and the multipole expansion method in cylindrical wave functions to compute the scattered pressure around the cylinder with particular emphasis on its physical properties. The results show that depending on the beam and lens parameters, a tight focusing (with dimensions much smaller than the beam waist) can be achieved. Subwavelength resolution can be also achieved by selecting a lens material with a speed of sound exceeding that of the host fluid medium. The ultrasonic superlensing jets provide the impetus to develop improved subwavelength microscopy and acoustical image-slicing systems, cell lysis and surgery, and photoacoustic imaging to name a few examples. Moreover, an acoustical fork-sheet generation may open innovative avenues in reconfigurable on-chip micro/nanoparticle tweezers and surface acoustic waves devices. - Highlights: • Ultrasonic

  8. Physical and chemical characterizations of corn stover and poplar solids resulting from leading pretreatment technologies.

    Science.gov (United States)

    Kumar, Rajeev; Mago, Gaurav; Balan, Venkatesh; Wyman, Charles E

    2009-09-01

    In order to investigate changes in substrate chemical and physical features after pretreatment, several characterizations were performed on untreated (UT) corn stover and poplar and their solids resulting pretreatments by ammonia fiber expansion (AFEX), ammonia recycled percolation (ARP), controlled pH, dilute acid, flowthrough, lime, and SO(2) technologies. In addition to measuring the chemical compositions including acetyl content, physical attributes determined were biomass crystallinity, cellulose degree of polymerization, cellulase adsorption capacity of pretreated solids and enzymatically extracted lignin, copper number, FT-IR responses, scanning electron microscopy (SEM) visualizations, and surface atomic composition by electron spectroscopy of chemical analysis (ESCA). Lime pretreatment removed the most acetyl groups from both corn stover and poplar, while AFEX removed the least. Low pH pretreatments depolymerized cellulose and enhanced biomass crystallinity much more than higher pH approaches. Lime pretreated corn stover solids and flowthrough pretreated poplar solids had the highest cellulase adsorption capacity, while dilute acid pretreated corn stover solids and controlled pH pretreated poplar solids had the least. Furthermore, enzymatically extracted AFEX lignin preparations for both corn stover and poplar had the lowest cellulase adsorption capacity. ESCA results showed that SO(2) pretreated solids had the highest surface O/C ratio for poplar, but for corn stover, the highest value was observed for dilute acid pretreatment with a Parr reactor. Although dependent on pretreatment and substrate, FT-IR data showed that along with changes in cross linking and chemical changes, pretreatments may also decrystallize cellulose and change the ratio of crystalline cellulose polymorphs (Ialpha/Ibeta).

  9. Stomatal factors and vulnerability of stem xylem to cavitation in poplars.

    Science.gov (United States)

    Arango-Velez, Adriana; Zwiazek, Janusz J; Thomas, Barb R; Tyree, Melvin T

    2011-10-01

    The relationships between the vulnerability of stem xylem to cavitation, stomatal conductance, stomatal density, and leaf and stem water potential were examined in six hybrid poplar (P38P38, Walker, Okanese, Northwest, Assiniboine and Berlin) and balsam poplar (Populus balsamifera) clones. Stem xylem cavitation resistance was examined with the Cavitron technique in well-watered plants grown in the greenhouse. To investigate stomatal responses to drought, plants were subjected to drought stress by withholding watering for 5 (mild drought) and 7 (severe drought) days and to stress recovery by rewatering severely stressed plants for 30 min and 2 days. The clones varied in stomatal sensitivity to drought and vulnerability to stem xylem cavitation. P38P38 reduced stomatal conductance in response to mild stress while the balsam poplar clone maintained high leaf stomatal conductance under more severe drought stress conditions. Differences between the severely stressed clones were also observed in leaf water potentials with no or relatively small decreases in Assiniboine, P38P38, Okanese and Walker. Vulnerability to drought-induced stem xylem embolism revealed that balsam poplar and Northwest clones reached loss of conductivity at lower stem water potentials compared with the remaining clones. There was a strong link between stem xylem resistance to cavitation and stomatal responsiveness to drought stress in balsam poplar and P38P38. However, the differences in stomatal responsiveness to mild drought suggest that other drought-resistant strategies may also play a key role in some clones of poplars exposed to drought stress. Copyright © Physiologia Plantarum 2011.

  10. Uptake of ferrocyanide in willow and poplar trees in a long term greenhouse experiment.

    Science.gov (United States)

    Dimitrova, Tsvetelina; Repmann, Frank; Raab, Thomas; Freese, Dirk

    2015-04-01

    Phytoremediation of sites contaminated with iron cyanides can be performed using poplar and willow trees. Poplar and willow trees were grown in potting substrate spiked with ferrocyanide concentrations of up to 2,000 mg kg(-1) for 4 and 8 weeks respectively. Soil solution and leaf tissue of different age were sampled for total cyanide analysis every week. Chlorophyll content in the leaves was determined to quantify cyanide toxicity. Results showed that cyanide in the soil solution of spiked soils differed between treatments and on weekly basis and ranged from 0.5 to 1,200 mg l(-1). The maximum cyanide content in willow and poplar leaves was 518 mg kg(-1) fresh weight (FW) and 148 mg kg(-1) FW respectively. Cyanide accumulated in the leaves increased linearly with increasing cyanide concentration in the soil solution. On the long term, significantly more cyanide was accumulated in old leaf tissue than in young tissue. Chlorophyll content in poplar decreased linearly with increasing cyanide in the soil solution and in leaf tissue, and over time. The inhibitory concentration (IC50) value for poplars after 4 weeks of exposure was 173 mg l(-1) and for willow after 8 weeks of exposure-768 mg l(-1). Results show that willows tolerate much more cyanide and over a longer period than poplars, making them very appropriate for remediating sites highly contaminated with iron cyanides.

  11. Impact of RAV1-engineering on poplar biomass production: a short-rotation coppice field trial.

    Science.gov (United States)

    Moreno-Cortés, Alicia; Ramos-Sánchez, José Manuel; Hernández-Verdeja, Tamara; González-Melendi, Pablo; Alves, Ana; Simões, Rita; Rodrigues, José Carlos; Guijarro, Mercedes; Canellas, Isabel; Sixto, Hortensia; Allona, Isabel

    2017-01-01

    Early branching or syllepsis has been positively correlated with high biomass yields in short-rotation coppice (SRC) poplar plantations, which could represent an important lignocellulosic feedstock for the production of second-generation bioenergy. In prior work, we generated hybrid poplars overexpressing the chestnut gene RELATED TO ABI3/VP1 1 (CsRAV1), which featured c. 80% more sylleptic branches than non-modified trees in growth chambers. Given the high plasticity of syllepsis, we established a field trial to monitor the performance of these trees under outdoor conditions and a SRC management. We examined two CsRAV1-overexpression poplar events for their ability to maintain syllepsis and their potential to enhance biomass production. Two poplar events with reduced expression of the CsRAV1 homologous poplar genes PtaRAV1 and PtaRAV2 were also included in the trial. Under our culture conditions, CsRAV1-overexpression poplars continued developing syllepsis over two cultivation cycles. Biomass production increased on completion of the first cycle for one of the overexpression events, showing unaltered structural, chemical, or combustion wood properties. On completion of the second cycle, aerial growth and biomass yields of both overexpression events were reduced as compared to the control. These findings support the potential application of CsRAV1-overexpression to increase syllepsis in commercial elite trees without changing their wood quality. However, the syllepsis triggered by the introduction of this genetic modification appeared not to be sufficient to sustain and enhance biomass production.

  12. Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar

    Directory of Open Access Journals (Sweden)

    Lawrence Amanda M

    2010-11-01

    Full Text Available Abstract Background Riverine ecosystems, highly sensitive to climate change and human activities, are characterized by rapid environmental change to fluctuating water levels and siltation, causing stress on their biological components. We have little understanding of mechanisms by which riverine plant species have developed adaptive strategies to cope with stress in dynamic environments while maintaining growth and development. Results We report that poplar (Populus spp. has evolved a systems level "stress proteome" in the leaf-stem-root apoplast continuum to counter biotic and abiotic factors. To obtain apoplast proteins from P. deltoides, we developed pressure-chamber and water-displacement methods for leaves and stems, respectively. Analyses of 303 proteins and corresponding transcripts coupled with controlled experiments and bioinformatics demonstrate that poplar depends on constitutive and inducible factors to deal with water, pathogen, and oxidative stress. However, each apoplast possessed a unique set of proteins, indicating that response to stress is partly compartmentalized. Apoplast proteins that are involved in glycolysis, fermentation, and catabolism of sucrose and starch appear to enable poplar to grow normally under water stress. Pathogenesis-related proteins mediating water and pathogen stress in apoplast were particularly abundant and effective in suppressing growth of the most prevalent poplar pathogen Melampsora. Unexpectedly, we found diverse peroxidases that appear to be involved in stress-induced cell wall modification in apoplast, particularly during the growing season. Poplar developed a robust antioxidative system to buffer oxidation in stem apoplast. Conclusion These findings suggest that multistress response in the apoplast constitutes an important adaptive trait for poplar to inhabit dynamic environments and is also a potential mechanism in other riverine plant species.

  13. Can we use short rotation coppice poplar for sugar based biorefinery feedstock? Bioconversion of 2-year-old poplar grown as short rotation coppice.

    Science.gov (United States)

    Dou, Chang; Marcondes, Wilian F; Djaja, Jessica E; Bura, Renata; Gustafson, Rick

    2017-01-01

    Feedstock cost is a substantial barrier to the commercialization of lignocellulosic biorefineries. Poplar grown using a short rotation coppice (SRC) system has the potential to provide a low-cost feedstock and economically viable sugar yields for fuels and chemicals production. In the coppice management regime, poplars are harvested after 2 years' growth to develop the root system and establish the trees. The biomass from these 2-year-old trees is very heterogeneous, and includes components of leaf, bark, branch, and wood chip. This material is quite different than the samples that have been used in most poplar bioconversion research, which come from mature trees of short rotation forestry (SRF) plantations. If the coppice management regime is to be used, it is important that feedstock growers maximize their revenue from this initial harvest, but the heterogeneous nature of the biomass may be challenging for bioconversion. This work evaluates bioconversion of 2-year-old poplar coppice and compares its performance to whitewood chips from 12-year-old poplar. The 2-year-old whole tree coppice (WTC) is comprised of 37% leaf, 9% bark, 12% branch, and 42% wood chip. As expected, the chemical compositions of each component were markedly different. The leaf has a low sugar content but is high in phenolics, ash, and extractives. By removing the leaves, the sugar content of the biomass increased significantly, while the phenolic, ash, and extractives contents decreased. Leaf removal improved monomeric sugar yield by 147 kg/tonne of biomass following steam pretreatment and enzymatic hydrolysis. Bioconversion of the no-leaf coppice (NLC) achieved a 67% overall sugar recovery, showing no significant difference to mature whitewood from forestry plantation (WWF, 71%). The overall sugar yield of NLC was 135 kg/tonne less than that of WWF, due to the low inherent sugar content in original biomass. An economic analysis shows the minimum ethanol selling price required to cover the

  14. Study on Drying Characteristic of Chinese Fir and Poplar Plantation Wood

    Institute of Scientific and Technical Information of China (English)

    ZHOUYongdong; LIXiaoling

    2004-01-01

    The drying characteristic was studied for plantation wood of Chinese fir and poplar, which are typical plantation wood of southern and northern part of China, respectively. Through lO0-degree-method the drying characteristic and basic drying condition were gotten, then drying schedule was developed for practical drying, the results showed that the drying schedule is suitable for Chinese fir and poplar plantation lumber, but shrinkage is large. The recommendation was made that enough dead weight is needed to decrease shrinkage in drying process. The drying quality of the two species of lumber is good in conventional drying method.

  15. Failure analysis of axle shaft of a fork lift

    Directory of Open Access Journals (Sweden)

    Souvik Das

    2015-04-01

    Full Text Available An axle shaft of fork lift failed at operation within 296 h of service. The shaft transmits torque from discrepancy to wheel through planetary gear arrangement. A section of fractured axle shaft made of induction-hardened steel was analyzed to determine the root cause of the failure. Optical microscopies as well as field emission gun scanning electron microscopy (FEG-SEM along with energy dispersive spectroscopy (EDS were carried out to characterize the microstructure. Hardness profile throughout the cross-section was evaluated by micro-hardness measurements. Chemical analysis indicated that the shaft was made of 42CrMo4 steel grade as per specification. Microstructural analysis and micro-hardness profile revealed that the shaft was improperly heat treated resulting in a brittle case, where crack was found to initiate from the case in a brittle mode in contrast to ductile mode within the core. This behaviour was related to differences in microstructure, which was observed to be martensitic within the case with a micro-hardness equivalent to 735 HV, and a mixture of non-homogeneous structure of pearlite and ferrite within the core with a hardness of 210 HV. The analysis suggests that the fracture initiated from the martensitic case as brittle mode due to improper heat treatment process (high hardness. Moreover the inclusions along the hot working direction i.e. in the longitudinal axis made the component more susceptible to failure.

  16. A Tuning Fork with a Short Fibre Probe Sensor for a Near-FieldScanning Optical Microscope

    Institute of Scientific and Technical Information of China (English)

    王沛; 鲁拥华; 章江英; 明海; 谢建平; 黄建文; 高宗圣; 蔡定平

    2002-01-01

    We report on a tapping-mode tuning fork with a short fibre probe sensor for a near-field scanning optical microscope. The method demonstrates how to fabricate the short fibre probe. This tapping-mode tuning fork with a short fibre probe can provide stable and high Q at the tapping frequency of the tuning fork, and can give high-quality near-field scanning optical microscope and atomic force microscope images of samples. We present the results of using the tapping-mode tuning fork with a short fibre probe sensor for a near-field scanning optical microscope performed on an eight-channel silica waveguide.

  17. Effect of Genetically Modified Poplars on Soil Microbial Communities during the Phytoremediation of Waste Mine Tailings▿†

    Science.gov (United States)

    Hur, Moonsuk; Kim, Yongho; Song, Hae-Ryong; Kim, Jong Min; Choi, Young Im; Yi, Hana

    2011-01-01

    The application of transgenic plants to clean up environmental pollution caused by the wastes of heavy metal mining is a promising method for removing metal pollutants from soils. However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat. PMID:21890678

  18. Molecular recognition imaging using tuning fork-based transverse dynamic force microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Hofer, Manuel; Adamsmaier, Stefan [University of Linz, Institute for Biophysics, Altenbergerstr. 69, 4040 Linz (Austria); Zanten, Thomas S. van [IBEC-Institute for Bioengineering of Catalonia and CIBER-Bbn, Baldiri i Reixac 15-21, Barcelona 08028 (Spain); Chtcheglova, Lilia A. [University of Linz, Institute for Biophysics, Altenbergerstr. 69, 4040 Linz (Austria); Manzo, Carlo [IBEC-Institute for Bioengineering of Catalonia and CIBER-Bbn, Baldiri i Reixac 15-21, Barcelona 08028 (Spain); Duman, Memed [University of Linz, Institute for Biophysics, Altenbergerstr. 69, 4040 Linz (Austria); Mayer, Barbara [Christian Doppler Laboratory for Nanoscopic Methods in Biophysics, Institute for Biophysics, University of Linz, Altenbergerstr. 69, 4040 Linz (Austria); Ebner, Andreas [University of Linz, Institute for Biophysics, Altenbergerstr. 69, 4040 Linz (Austria); Christian Doppler Laboratory for Nanoscopic Methods in Biophysics, Institute for Biophysics, University of Linz, Altenbergerstr. 69, 4040 Linz (Austria); Moertelmaier, Manuel; Kada, Gerald [Agilent Technologies Austria GmbH, Aubrunnerweg 11, 4040 Linz (Austria); Garcia-Parajo, Maria F. [IBEC-Institute for Bioengineering of Catalonia and CIBER-Bbn, Baldiri i Reixac 15-21, Barcelona 08028 (Spain); ICREA-Institucio Catalana de Recerca i Estudis Avancats, 08010 Barcelona (Spain); Hinterdorfer, Peter, E-mail: peter.hinterdorfer@jku.at [University of Linz, Institute for Biophysics, Altenbergerstr. 69, 4040 Linz (Austria); Christian Doppler Laboratory for Nanoscopic Methods in Biophysics, Institute for Biophysics, University of Linz, Altenbergerstr. 69, 4040 Linz (Austria); Kienberger, Ferry [Agilent Technologies Austria GmbH, Aubrunnerweg 11, 4040 Linz (Austria)

    2010-05-15

    We demonstrate simultaneous transverse dynamic force microscopy and molecular recognition imaging using tuning forks as piezoelectric sensors. Tapered aluminum-coated glass fibers were chemically functionalized with biotin and anti-lysozyme molecules and attached to one of the prongs of a 32 kHz tuning fork. The lateral oscillation amplitude of the tuning fork was used as feedback signal for topographical imaging of avidin aggregates and lysozyme molecules on mica substrate. The phase difference between the excitation and detection signals of the tuning fork provided molecular recognition between avidin/biotin or lysozyme/anti-lysozyme. Aggregates of avidin and lysozyme molecules appeared as features with heights of 1-4 nm in the topographic images, consistent with single molecule atomic force microscopy imaging. Recognition events between avidin/biotin or lysozyme/anti-lysozyme were detected in the phase image at high signal-to-noise ratio with phase shifts of 1-2{sup o}. Because tapered glass fibers and shear-force microscopy based on tuning forks are commonly used for near-field scanning optical microscopy (NSOM), these results open the door to the exciting possibility of combining optical, topographic and biochemical recognition at the nanometer scale in a single measurement and in liquid conditions.

  19. South Fork Snake River/Palisades Wildlife Mitigation Project: Environmental assessment

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1995-09-01

    BPA proposes to fund the implementation of the South Fork Snake River Programmatic Management Plan to compensate for losses of wildlife and wildlife habitat due to hydroelectric development at Palisades Dam. The Idaho Department of Fish and Game drafted the plan, which was completed in May 1993. This plan recommends land and conservation easement acquisition and wildlife habitat enhancement measures. These measures would be implemented on selected lands along the South Fork of the Snake River between Palisades Dam and the confluence with the Henry`s Fork, and on portions of the Henry`s Fork located in Bonneville, Madison, and Jefferson Counties, Idaho. BPA has prepared an Environmental Assessment evaluating the proposed project. The EA also incorporates by reference the analyses in the South Fork Snake River Activity/Operations Plan and EA prepared jointly in 1991 by the Bureau of Land Management and the Forest Service. Based on the analysis in the EA, BPA has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an Environmental Impact Statement (EIS) is not required and BPA is issuing this FONSI.

  20. Repeated unidirectional introgression towards Populus balsamifera in contact zones of exotic and native poplars

    NARCIS (Netherlands)

    Thompson, S.L.; Lamothe, M.; Meirmans, P.G.; Périnet, P.; Isabel, N.

    2010-01-01

    As the evolutionary significance of hybridization is largely dictated by its extent beyond the first generation, we broadly surveyed patterns of introgression across a sympatric zone of two native poplars (Populus balsamifera, Populus deltoides) in Quebec, Canada within which European exotic Populus

  1. Association analysis identifies Melampsora ×columbiana poplar leaf rust resistance SNPs.

    Directory of Open Access Journals (Sweden)

    Jonathan La Mantia

    Full Text Available Populus species are currently being domesticated through intensive time- and resource-dependent programs for utilization in phytoremediation, wood and paper products, and conversion to biofuels. Poplar leaf rust disease can greatly reduce wood volume. Genetic resistance is effective in reducing economic losses but major resistance loci have been race-specific and can be readily defeated by the pathogen. Developing durable disease resistance requires the identification of non-race-specific loci. In the presented study, area under the disease progress curve was calculated from natural infection of Melampsora ×columbiana in three consecutive years. Association analysis was performed using 412 P. trichocarpa clones genotyped with 29,355 SNPs covering 3,543 genes. We found 40 SNPs within 26 unique genes significantly associated (permutated P<0.05 with poplar rust severity. Moreover, two SNPs were repeated in all three years suggesting non-race-specificity and three additional SNPs were differentially expressed in other poplar rust interactions. These five SNPs were found in genes that have orthologs in Arabidopsis with functionality in pathogen induced transcriptome reprogramming, Ca²⁺/calmodulin and salicylic acid signaling, and tolerance to reactive oxygen species. The additive effect of non-R gene functional variants may constitute high levels of durable poplar leaf rust resistance. Therefore, these findings are of significance for speeding the genetic improvement of this long-lived, economically important organism.

  2. Effects of irrigating poplar energy crops with landfill leachate on soil micro- and meso-fauna

    Science.gov (United States)

    Jill A. Zalesny; David R. Coyle; Ronald S. Jr. Zalesny; Adam H. Wiese

    2009-01-01

    Increased municipal solid waste generated worldwide combined with substantial demand for renewable energy has prompted testing and deployment of woody feedstock production systems that reuse and recycle wastewaters as irrigation and fertilization for the trees. Populus species and hybrids (i.e., poplars) are ideal for such systems given their fast...

  3. Gaseous NO2 effects on stomatal behavior, photosynthesis and respiration of hybrid poplar leaves

    Science.gov (United States)

    In this study, we used poplar as a model plant and investigated the effects of gaseous nitrogen dioxide (NO2, 4 microliter per liter) on stomatal conductance, photosynthesis, dark- and photorespiration of Populus alba x Populus berolinensis hybrid leaves using the photosynthesis system and scanning...

  4. Effects of Direct Application of Fertilizers and Hydrogel on the Establishment of Poplar Cuttings

    Directory of Open Access Journals (Sweden)

    Henrik Böhlenius

    2014-12-01

    Full Text Available The aim of poplar plantations is to achieve high biomass production over a short rotation period. This requires low mortality and fast development of the transplants. The experiment described in this paper examines methods aimed at enhancing survival and development of Populus trichocarpa plants by application of fertilizers, a hydrogel or a combination of both to dormant cuttings just before planting. The experiment was carried out at two agricultural sites with different soil characteristics, a loamy sand and a silty loam. It was demonstrated that none of the treatments influenced survival or early growth at the silty loam soil site, and plant development was delayed by the solid fertilizer. At the site with loamy sand, the solid fertilizer negatively affected both survival and early growth. Hydrogel and the combination of hydrogel and the solid fertilizer also hampered early growth. Overall, treatments of poplar cuttings with hydrogel or fertilizers alone, or in combination, may not be a method to reduce poplar cutting mortality or to enhance early plant development on agricultural land. However, our results demonstrate that establishing poplar with cuttings as transplants can be used on both loamy sand and silty loam soils.

  5. Soil respiration in apple orchards, poplar plantations and adjacent grasslands in Artvin, Turkey.

    Science.gov (United States)

    Tufekcioglu, Aydin; Ozbayram, Ali Kemal; Kucuk, Mehmet

    2009-09-01

    In this study influence of land-use type on soil respiration was investigated in poplar plantation, apple orchard (apple trees with understory grasses) and adjacent grassland sites in Seyitler Area, Artvin, Turkey. Soil respiration was measured approximately monthly in three sampling plots in each land use type from January 2005 to November 2005 using the soda-lime technique. Mean daily soil respiration ranged from 0.63-3.59 g Cm(-2) d(-1). Mean soil respiration in apple orchard, poplar plantation and grassland sites were 1.98, 1.45 and 1.12 g C m(-2) d(-1), respectively. Mean soil respiration was significantly greater in apple orchard than in poplar plantations and grasslands. Seasonal changes in soil respiration were related to soil moisture and temperature changes. Mean soil respiration rate correlated strongly with subsurface soil (15-35cm) pH (R = -0,73; p biomass. Overall, our results indicate that apple orchards with understory grasses have higher soil biological activity compared to poplar and grassland sites.

  6. Environmental controls on ozone fluxes in a poplar plantation in Western Europe

    DEFF Research Database (Denmark)

    Zona, D.; Gioli, B.; Fares, S.

    2014-01-01

    Tropospheric O-3 is a strong oxidant that may affect vegetation and human health. Here we report on the O-3 fluxes from a poplar plantation in Belgium during one year. Surprisingly, the winter and autumn O-3 fluxes were of similar magnitude to ones observed during most of the peak vegetation deve...

  7. The use of short rotation willows and poplars for the recycling of saline waste waters

    Science.gov (United States)

    Jaconette Mirck; Ronald S. Jr. Zalesny; Ioannis Dimitriou; Jill A. Zalesny; Timothy A. Volk; Warren E. Mabee

    2009-01-01

    The production of high-salinity waste waters by landfills and other waste sites causes environmental concerns. This waste water often contains high concentrations of sodium and chloride, which may end up in local ground and surface waters. Vegetation filter systems comprised of willows and poplars can be used for the recycling of saline waste water. These vegetation...

  8. Analysis of genetic and environmental effects on hybrid poplar rooting in Central and Northern Minnesota, USA

    Science.gov (United States)

    Ronald S., Jr. Zalesny; Don Riemenschneider; Edmund Bauer

    2000-01-01

    We studied genetic and environmental effects on adventitious root initiation and growth because rooting is biologically prerequisite to the establishment of hybrid poplar plantations. Six clones from two pedigrees (pure Populus deltoides "cottonwoods" and P. deltoides x P. maximowiczii hybrids) were...

  9. Evaluating hybrid poplar rooting. I. genotype x environment interactions in three contrasting sites

    Science.gov (United States)

    Ronald S., Jr. Zalesny; Don E. Riemenschneider; Richard B. Hall

    2002-01-01

    We need to learn more about environmental conditions that promote or hinder rooting of unrooted dormant hybrid poplar cuttings. Planting cuttings and recording survival after the growing season is not suitable to keep up with industrial demands for improved stock. This method does not provide information about specific genotype x environment interactions. We know very...

  10. Poplar trees for phytoremediation of high levels of nitrate and applications in bioenergy.

    Science.gov (United States)

    Castro-Rodríguez, Vanessa; García-Gutiérrez, Angel; Canales, Javier; Cañas, Rafael A; Kirby, Edward G; Avila, Concepción; Cánovas, Francisco M

    2016-01-01

    The utilization of high amounts of nitrate fertilizers for crop yield leads to nitrate pollution of ground and surface waters. In this study, we report the assimilation and utilization of nitrate luxuriant levels, 20 times more than the highest N fertilizer application in Europe, by transgenic poplars overexpressing a cytosolic glutamine synthetase (GS1). In comparison with the wild-type controls, transgenic plants grown under high N levels exhibited increased biomass (171.6%) and accumulated higher levels of proteins, chlorophylls and total sugars such as glucose, fructose and sucrose. These plants also exhibited greater nitrogen-use efficiency particularly in young leaves, suggesting that they are able to translocate most of the resources to the above-ground part of the plant to produce biomass. The transgenic poplar transcriptome was greatly affected in response to N availability with 1237 genes differentially regulated in high N, while only 632 genes were differentially expressed in untransformed plants. Many of these genes are essential in the adaptation and response against N excess and include those involved in photosynthesis, cell wall formation and phenylpropanoid biosynthesis. Cellulose production in the transgenic plants was fivefold higher than in control plants, indicating that transgenic poplars represent a potential feedstock for applications in bioenergy. In conclusion, our results show that GS transgenic poplars can be used not only for improving growth and biomass production but also as an important resource for potential phytoremediation of nitrate pollution.

  11. Identification of differentially expressed proteins in poplar leaves induced by Marssonina brunnea f. Sp. Multigermtubi

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Black spot disease in poplar is a disease of the leaf caused by fungus. The major pathogen is Marssonina brunnea f. sp. multigermtubi.To date, little is known about the molecular mechanism of poplar (M. brunnea) interaction. In order to identify the proteins related to disease resistance and understand its molecular basis, the clone "NL895" (P. euramericana CL"NL895"), which is highly resistant to M.brunnea f. sp. multigermtubi, was used in this study. We used two-dimensional gel electrophoresis (2-DE) and mass spectrometry (MS) to identify the proteins in poplar leaves that were differentially expressed in response to black spot disease pathogen, M. brunnea f. sp. multigermtubi. Proteins extracted from poplar leaves at 0, 12, 24, 48, and 72 h after pathogen-inoculation were separated by 2-DE. About 500 reproducible protein spots were detected, of which 40 protein spots displayed differential expression in levels and were subjected to Matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) followed by database searching. According to the function, the identified proteins were sorted into five categories, that is, protein synthesis, metabolism, defense response and unclassified proteins.

  12. Effector-mining in the poplar rust fungus Melampsora larici populina secretome

    Directory of Open Access Journals (Sweden)

    Cecile eLorrain

    2015-12-01

    Full Text Available The poplar leaf rust fungus, Melampsora larici-populina has been established as a tree-microbe interaction model. Understanding the molecular mechanisms controlling infection by pathogens appears essential for durable management of tree plantations. In biotrophic plant parasites, effectors are known to condition host cell colonization. Thus, investigation of candidate secreted effector proteins is a major goal in the poplar-poplar rust interaction. Unlike oomycetes, fungal effectors do not share conserved motifs and candidate prediction relies on a set of a priori criteria established from reported bona fide effectors. Secretome prediction, genome-wide analysis of gene families and transcriptomics of M. larici-populina have led to catalogues of more than a thousand secreted proteins. Automatized effector mining pipelines hold great promise for rapid and systematic identification and prioritization of candidate secreted effector proteins for functional characterization. In this review, we report on and discuss the current status of the poplar rust fungus secretome and prediction of candidate effectors in this species.

  13. Arbuscular mycorrhizal fungi differentially affect the response to high zinc concentrations of two registered poplar clones

    Energy Technology Data Exchange (ETDEWEB)

    Lingua, Guido [Dipartimento di Scienze dell' Ambiente e della Vita, Universita del Piemonte Orientale ' Amedeo Avogadro' , Via Bellini 25/G, I-15100 Alessandria (Italy)], E-mail: guido.lingua@mfn.unipmn.it; Franchin, Cinzia [Dipartimento di Biologia evoluzionistica sperimentale, Universita di Bologna, Via Irnerio 42, I-40126 Bologna (Italy); Todeschini, Valeria [Dipartimento di Scienze dell' Ambiente e della Vita, Universita del Piemonte Orientale ' Amedeo Avogadro' , Via Bellini 25/G, I-15100 Alessandria (Italy); Castiglione, Stefano [Dipartimento di Biologia, Universita di Milano, Via Celoria 25, I-20100 Milano (Italy); Biondi, Stefania [Dipartimento di Biologia evoluzionistica sperimentale, Universita di Bologna, Via Irnerio 42, I-40126 Bologna (Italy); Burlando, Bruno [Dipartimento di Scienze dell' Ambiente e della Vita, Universita del Piemonte Orientale ' Amedeo Avogadro' , Via Bellini 25/G, I-15100 Alessandria (Italy); Parravicini, Valerio [Dipartimento di Biologia, Universita di Milano, Via Celoria 25, I-20100 Milano (Italy); Torrigiani, Patrizia [Dipartimento di Biologia evoluzionistica sperimentale, Universita di Bologna, Via Irnerio 42, I-40126 Bologna (Italy); Berta, Graziella [Dipartimento di Scienze dell' Ambiente e della Vita, Universita del Piemonte Orientale ' Amedeo Avogadro' , Via Bellini 25/G, I-15100 Alessandria (Italy)

    2008-05-15

    The effects of a high concentration of zinc on two registered clones of poplar (Populus alba Villafranca and Populus nigra Jean Pourtet), inoculated or not with two arbuscular mycorrhizal fungi (Glomus mosseae or Glomus intraradices) before transplanting them into polluted soil, were investigated, with special regard to the extent of root colonization by the fungi, plant growth, metal accumulation in the different plant organs, and leaf polyamine concentration. Zinc accumulation was lower in Jean Pourtet than in Villafranca poplars, and it was mainly translocated to the leaves; the metal inhibited mycorrhizal colonization, compromised plant growth, and, in Villafranca, altered the putrescine profile in the leaves. Most of these effects were reversed or reduced in plants pre-inoculated with G. mosseae. Results indicate that poplars are suitable for phytoremediation purposes, confirming that mycorrhizal fungi can be useful for phytoremediation, and underscore the importance of appropriate combinations of plant genotypes and fungal symbionts. - Inoculation with arbuscular mycorrhizal fungi can improve poplar tolerance to heavy metals in phytoremediation programmes.

  14. Nucleotide diversity among natural populations of a North American poplar (Populus balsamifera, Salicaceae).

    Science.gov (United States)

    Breen, Amy L; Glenn, Elise; Yeager, Adam; Olson, Matthew S

    2009-01-01

    Poplars (Populus spp.) comprise an important component of circumpolar boreal forest ecosystems and are the model species for tree genomics. In this study, we surveyed genetic variation and population differentiation in three nuclear genes among populations of balsam poplar (Populus balsamifera) in North America. We examined nucleotide sequence variation in alcohol dehydrogenase 1 (Adh1) and glyceraldehyde 3-phosphate dehydrogenase (G3pdh), two well-studied nuclear loci in plants, and abscisic acid insensitivity 1B (ABI1B), a locus coincident with timing of seasonal dormancy in quantitative trait locus (QTL) studies of hybrid poplars. We compared estimates of baseline population genetic parameters for these loci with those obtained in studies of other poplar species, particularly European aspen (Populus tremula). Average pairwise nucleotide diversity (pi(tot) = 0.00216-0.00353) was equivalent to that in Populus trichocarpa, but markedly less than that in P. tremula. Elevated levels of population structure were observed in ABI1B between the northern and southern regions (F(CT) = 0.184, P boreal plant species.

  15. Energy partitioning and surface resistance of a poplar plantation in northern China

    Science.gov (United States)

    M. Kang; Z. Zhang; A. Noormets; X. Fang; T. Zha; J. Zhou; G. Sun; S. G. McNulty; J. Chen

    2015-01-01

    Poplar (Populus sp.) plantations have been, on the one hand, broadly used in northern China for urban greening, combating desertification, as well as for paper and wood production. On the other hand, such plantations have been questioned occasionally for their possible negative impacts on water availability due to the higher water-use nature of...

  16. Genetic manipulation of the metabolism of polyamines in poplar cells. The regulation of putrescine catabolism

    Science.gov (United States)

    Pratiksha Bhatnagar; Rakesh Minocha; Subhash C. Minocha

    2002-01-01

    We investigated the catabolism of putrescine (Put) in a non-transgenic (NT) and a transgenic cell line of poplar (Populus nigra x maximowiczii) expressing a mouse (Mus musculus) ornithine (Orn) decarboxylase (odc) cDNA. The transgenic cells produce 3- to 4-fold higher amounts of Put than the NT...

  17. Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome.

    Science.gov (United States)

    Beckers, Bram; Op De Beeck, Michiel; Weyens, Nele; Van Acker, Rebecca; Van Montagu, Marc; Boerjan, Wout; Vangronsveld, Jaco

    2016-02-23

    Cinnamoyl-CoA reductase (CCR), an enzyme central to the lignin biosynthetic pathway, represents a promising biotechnological target to reduce lignin levels and to improve the commercial viability of lignocellulosic biomass. However, silencing of the CCR gene results in considerable flux changes of the general and monolignol-specific lignin pathways, ultimately leading to the accumulation of various extractable phenolic compounds in the xylem. Here, we evaluated host genotype-dependent effects of field-grown, CCR-down-regulated poplar trees (Populus tremula × Populus alba) on the bacterial rhizosphere microbiome and the endosphere microbiome, namely the microbiota present in roots, stems, and leaves. Plant-associated bacteria were isolated from all plant compartments by selective isolation and enrichment techniques with specific phenolic carbon sources (such as ferulic acid) that are up-regulated in CCR-deficient poplar trees. The bacterial microbiomes present in the endosphere were highly responsive to the CCR-deficient poplar genotype with remarkably different metabolic capacities and associated community structures compared with the WT trees. In contrast, the rhizosphere microbiome of CCR-deficient and WT poplar trees featured highly overlapping bacterial community structures and metabolic capacities. We demonstrate the host genotype modulation of the plant microbiome by minute genetic variations in the plant genome. Hence, these interactions need to be taken into consideration to understand the full consequences of plant metabolic pathway engineering and its relation with the environment and the intended genetic improvement.

  18. Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure.

    Science.gov (United States)

    Barrès, Benoît; Dutech, Cyril; Andrieux, Axelle; Halkett, Fabien; Frey, Pascal

    2012-10-01

    Fungal plant pathogens, especially rust fungi (Pucciniales), are well known for their complex life cycles, which include phases of sexual and asexual reproduction. The effect of asexual multiplication on population genetic diversity has been investigated in the poplar rust fungus Melampsora larici-populina using a nested hierarchical sampling scheme. Four hierarchical levels were considered: leaf, twig, tree and site. Both cultivated and wild poplar stands were sampled at two time points at the start and end of rust epidemics. A total of 641 fungal isolates was analysed using nine microsatellite markers. This study revealed that the genetic signature of asexual multiplication in the wild poplar stand was seen only at lower hierarchical levels (leaf and twig). Moreover, we observed an erosion of clonal structure through time, with an increase in both gene and genotypic diversity. New genotypes contributed to host infection over time, which demonstrates the importance of allo-infection in the epidemic process in this host-pathogen system. Compared with the wild stands, the nearly lack of detection of clonal structure in the cultivated stands reflects the higher infection level on cultivated poplars. More generally, this genetic analysis illustrates the utility of population genetics approach for elucidating the proportion of asexual reproduction in the multiplication of isolates during an epidemic, and for proper quantification of asexual dispersal in plant pathogens.

  19. Phytotoxicity of fresh and weathered diesel and gasoline to willow and poplar trees

    DEFF Research Database (Denmark)

    Trapp, Stefan; Köhler, A.; Larsen, L.C.

    2001-01-01

    The toxicity of fresh and weathered gasoline and diesel fuel to willow and poplar trees was studied using a tree transpiration toxicity test. Soils were taken from an abandoned filling station. Concentrations in the samples were measured as the sum of hydrocarbons from C5 to C10 (gasoline) and C1...

  20. Variation in the Growth Traits and Wood Properties of Hybrid White Poplar Clones

    Directory of Open Access Journals (Sweden)

    Huandi Ma

    2015-04-01

    Full Text Available The physical and chemical properties of poplar clones largely determine their suitability for different applications. The main objective of this study was to investigate clonal variation in four hybrid poplar clones grown at three sites in North China and identify the superior clone. Study materials were collected from four clones of hybrid white poplar: Populus tomentosa “LM50”, used as the control; two clones (Yiyang-1 and Yiyang-2, new hybrids of (P. tomentosa × P. bolleana × P. tomentosa “Truncata”; and Yiyang-3, a new hybrid of (P. tomentosa × P. bolleana × P. tomentosa “LM50”. In total, 192 individuals from four hybrid clones were randomly chosen for sampling. The growth traits of four 7-year-old clones were examined at three sites. We also measured the wood properties of four 6-year-old clones at the Fengfeng nursery. Variation in the growth traits and the ranking of stem volumes differed among sites. Fiber traits and wood chemical components showed significant interclonal variation. With regard to the comprehensive growth rate, cellulose content, holocellulose content, and fiber traits, Yiyang-1 exhibited the best performance among the four hybrid poplar clones, indicating its utility as a raw material for pulp and papermaking.

  1. RECOVERY FOLLOWING SUBARACHNOID BLOCK : EVALUATION USING 128 HZ TUNING FORK

    Directory of Open Access Journals (Sweden)

    Goyal

    2014-07-01

    Full Text Available BACKGROUND: Following spinal anesthesia it is very important to see complete recovery before ambulation and discharge of the patient. Conventional methods to see recovery from spinal block use different types of motor power tests like Bromage score or the Formal motor power test system. MATERIAL AND METHODS: A total of one hundred and fifty patients of ASA grade I and II, presenting for lower segment caesarean section under spinal anesthesia were taken up for the study. We compared the use of a 128-Hz tuning fork with the results of conventional evaluation of block recovery. Conventional block recovery testing included Bromage score, Formal muscle power testing according to the British Medical Research Council, pinprick testing, and warm/cold testing. After obtaining base line values, a subarachnoid block was performed and patients were tested every 15 minutes after surgery, till the vibration score of one less than the baseline was achieved. Statistical analysis was performed to compare the results of the different methods to the time at which baseline values of vibration sense were reached. RESULTS: At the time vibration sense testing returned to baseline, 100% of the patients had attained Bromage score of 0 with no residual motor block. 98% of the patients regained foot extension and foot flexion strength completely while 92% of the patients showed complete recovery of the quadriceps strength. CONCLUSION: Recovery of vibration sense corresponds with recovery of motor block after spinal anesthesia and may serve as an easy means of documenting recovery with a single test before discharge.

  2. Comparing growth and fine root distribution in monocultures and mixed plantations of hybrid poplar and spruce

    Institute of Scientific and Technical Information of China (English)

    Lahcen Benomar; Annie DesRochers; Guy R.Larocque

    2013-01-01

    Disease prevention,biodiversity,productivity improvement and ecological considerations are all factors that contribute to increasing interest in mixed plantations.The objective of this study was to evaluate early growth and productivity of two hybrid poplar clones,P.balsamifera x trichocarpa (PBT) and P.maximowiczii x balsamifera (PMB),one improved family of Norway spruce (Picea glauca (PA)) and one improved family of white spruce (Picea abies (PG)) growing under different spacings in monocultures and mixed plots.The plantations were established in 2003 in Abitibi-Témiscamingue,Quebec,Canada,in a split plot design with spacing as the whole plot factor (1 × 1 m,3 × 3 m and 5 × 5 m) and mixture treatments as subplot factor (pure:PBT,PMB,PA and PG,and 1:1 mixture PBT:PA,PBT:PG,PMB:PA and PMB:PG).Results showed a beneficial effect of the hybrid poplar-spruce mixture on diameter growth for hybrid poplar clones,but not for the 5 × 5 m spacing because of the relatively young age of the plantations.Diameter growth of the spruces decreased in mixed plantings in the 1 × 1 m,while their height growth increased,resulting in similar aboveground biomass per tree across treatments.Because of the large size differences between spruces and poplars,aboveground biomass in the mixed plantings was generally less than that in pure poplar plots.Leaf nitrogen concentration for the two spruce families and hybrid poplar clone PMB was greater in mixed plots than in monocultures,while leaf nitrogen concentration of clone PBT was similar among mixture treatments.Because of its faster growth rate and greater soil resources demands,clone PMB was the only one showing an increase in leaf N with increased spacing between trees.Fine roots density was greater for both hybrid poplars than spruces.The vertical distribution of fine roots was insensitive to mixture treatment.

  3. The effect of mycorrhizal inoculation on hybrid poplar fine root dynamics in hydrocarbon contaminated soils

    Energy Technology Data Exchange (ETDEWEB)

    Gunderson, J.; Knight, J.D.; Van Rees, K.C.J. [Saskatchewan Univ., Saskatoon, SK (Canada). Dept. of Soil Science

    2006-07-01

    The biological remediation of contaminated soils using plants was discussed. Hybrid poplars are good candidates for phytoremediation because they root deeply, cycle large amounts of water and grow quickly. Their fine root system is pivotal in nutrient and water acquisition. Therefore, in order to maximize the phytoremediation potential, it is important to understand the response of the fine root system. In addition to degrading organic chemicals, ectomycorrhizal (ECM) fungi provide the host with greater access to nutrients. This study determined the relationship between residual soil hydrocarbons and soil properties at a field site. The effects of residual contamination on hybrid poplar fine root dynamics was also examined along with the effect of ectomycorrhizal colonization on hybrid poplar fine root dynamics when grown in diesel contaminated soil under controlled conditions. A minirhizotron camera inside a growth chamber captured images of mycorrhizal inoculation on hybrid poplar fine root production. Walker hybrid poplar seedlings were grown for 12 weeks in a control soil and also in a diesel contaminated soil. Seedlings were also grown in control and diesel contaminated, ectomycorrhizal inoculated soils. The inoculum was a mycorrhizal mix containing Pisolithus tinctorius and Rhizopogon spp. The images showed that colonization by ECM fungi increased hybrid poplar fine root production and aboveground biomass in a diesel contaminated soil compared to non-colonized trees in the same soil. Root:shoot ratios were much higher in the diesel contaminated/non-inoculated treatment than in either of the control soil treatments. Results of phytoremediation in diesel contaminated soil were better in the non-colonized treatment than in the colonized treatment. Both treatments removed more contaminants from the soil than the unplanted control. Much higher quantities of hydrocarbons were found sequestered in the roots from the inoculated treatment than from the non

  4. Wutun Poplar growth in South of Xinjiang%吴屯杨在南疆的生长状况研究

    Institute of Scientific and Technical Information of China (English)

    丁晓丽; 易海艳; 杨盼盼

    2015-01-01

    Determination of annual Xinjiang poplar Wutun poplar under the same conditions, the growth indica-tors, the results show that the Wutun poplar implanted in 4436, 342 died, Wutun poplar's survival rate was 92.3%, while Xinjiang poplar implanted in 4399, 513 died, Xinjiang poplar survival rate was 88.3%.Through the investi-gation of Wutun poplar, and Xinjiang poplar plant height, diameter, diameter at breast height and found that Wutun poplar both plant height, basal diameter, diameter at breast height of these growth indicators are excellent and the Xinjiang poplar, so it can be concluded in the same habitatunder Wutun poplar faster than Xinjiang poplar growth rate, the overall growth is relatively stable, the resistance of fast-growing Wutun poplar introduction to the southern border is feasible.%通过对一年生的新疆杨与吴屯杨在同一条件下的生长指标测定,结果表明,吴屯杨共植入4436株,死亡342株,吴屯杨的成活率为92.3%;而新疆杨共植入4399株,死亡513株,新疆杨的成活率为88.3%.通过调查吴屯杨和新疆杨的株高、地径、胸径,发现吴屯杨无论是株高、地径、胸径这些生长指标都优与新疆杨,因此在同一生境下吴屯杨比新疆杨生长速率更快,整体生长比较稳定,抗逆性速生吴屯杨引种至南疆具有可行性.

  5. Forest biorefinery: Potential of poplar phytochemicals as value-added co-products.

    Science.gov (United States)

    Devappa, Rakshit K; Rakshit, Sudip K; Dekker, Robert F H

    2015-11-01

    The global forestry industry after experiencing a market downturn during the past decade has now aimed its vision towards the integrated biorefinery. New business models and strategies are constantly being explored to re-invent the global wood and pulp/paper industry through sustainable resource exploitation. The goal is to produce diversified, innovative and revenue generating product lines using on-site bioresources (wood and tree residues). The most popular product lines are generally produced from wood fibers (biofuels, pulp/paper, biomaterials, and bio/chemicals). However, the bark and other tree residues like foliage that constitute forest wastes, still remain largely an underexploited resource from which extractives and phytochemicals can be harnessed as by-products (biopharmaceuticals, food additives and nutraceuticals, biopesticides, cosmetics). Commercially, Populus (poplar) tree species including hybrid varieties are cultivated as a fast growing bioenergy crop, but can also be utilized to produce bio-based chemicals. This review identifies and underlines the potential of natural products (phytochemicals) from Populus species that could lead to new business ventures in biorefineries and contribute to the bioeconomy. In brief, this review highlights the importance of by-products/co-products in forest industries, methods that can be employed to extract and purify poplar phytochemicals, the potential pharmaceutical and other uses of >160 phytochemicals identified from poplar species - their chemical structures, properties and bioactivities, the challenges and limitations of utilizing poplar phytochemicals, and potential commercial opportunities. Finally, the overall discussion and conclusion are made considering the recent biotechnological advances in phytochemical research to indicate the areas for future commercial applications from poplar tree species. Crown Copyright © 2015. Published by Elsevier Inc. All rights reserved.

  6. Responses of energy partitioning and surface resistance to drought in a poplar plantation in northern China

    Science.gov (United States)

    Kang, M.; Zhang, Z.; Noormets, A.; Fang, X.; Zha, T.; Zhou, J.; Sun, G.; McNulty, S.; Chen, J.

    2015-01-01

    Poplar (Populus sp.) plantations have been used broadly for combating desertification, urban greening, and paper and wood production in northern China. However, given the high water use by the species and the regional dry environment, the long-term sustainability of these plantations needs to be evaluated. Currently, the understanding of energy partitioning and canopy resistance to water vapor and CO2 in poplar plantations is limited, impeding an accurate assessment of their true ecosystem functions. This study examined the variability of canopy bulk resistance parameters and energy partitioning over a four-year period encompassing both dry and wet conditions in a poplar (Populus euramericana CV. "74 / 76") plantation ecosystem located in northern China. Available energy (Net radiation Rn minus Soil Heat Flux, G) partitioning to latent (LE) and sensible (H) heat was responsive to climatological drought, with LE/(Rn-G) ranging from 62% in wet years (e.g. 2007 and 2008) to 53% in dry years (e.g. 2006 and 2009), and H/(Rn-G) from 25 to 33% between wet and dry years. Correspondingly, the Bowen ratio (β=H/LE) were 0.83 and 1.57. Surface resistance (Rs) had the greatest response to drought (+43%), but the aerodynamic and climatological resistances did not change significantly (p > 0.05). Partial correlation analysis indicated that Rs was the dominant factor in controlling the Bowen ratio. Furthermore, Rs was the major factor controlling LE during the growing season, even in wet years, as indicated by the decoupling coefficient (Ω = 0.45 and 0.39 in wet and dry years, respectively), and the LE / LEeq ratio ranged from 0.81 and 0.68 in wet and dry years, respectively. In general, the dry surface conditions dominated in this poplar plantation ecosystem regardless of soil water availability suggesting that fast-growing and water use-intensive species like poplar plantations are poorly adapted for the water limited region.

  7. Responses of energy partitioning and surface resistance to drought in a poplar plantation in northern China

    Directory of Open Access Journals (Sweden)

    M. Kang

    2015-01-01

    Full Text Available Poplar (Populus sp. plantations have been used broadly for combating desertification, urban greening, and paper and wood production in northern China. However, given the high water use by the species and the regional dry environment, the long-term sustainability of these plantations needs to be evaluated. Currently, the understanding of energy partitioning and canopy resistance to water vapor and CO2 in poplar plantations is limited, impeding an accurate assessment of their true ecosystem functions. This study examined the variability of canopy bulk resistance parameters and energy partitioning over a four-year period encompassing both dry and wet conditions in a poplar (Populus euramericana CV. "74 / 76" plantation ecosystem located in northern China. Available energy (Net radiation Rn minus Soil Heat Flux, G partitioning to latent (LE and sensible (H heat was responsive to climatological drought, with LE/(Rn-G ranging from 62% in wet years (e.g. 2007 and 2008 to 53% in dry years (e.g. 2006 and 2009, and H/(Rn-G from 25 to 33% between wet and dry years. Correspondingly, the Bowen ratio (β=H/LE were 0.83 and 1.57. Surface resistance (Rs had the greatest response to drought (+43%, but the aerodynamic and climatological resistances did not change significantly (p > 0.05. Partial correlation analysis indicated that Rs was the dominant factor in controlling the Bowen ratio. Furthermore, Rs was the major factor controlling LE during the growing season, even in wet years, as indicated by the decoupling coefficient (Ω = 0.45 and 0.39 in wet and dry years, respectively, and the LE / LEeq ratio ranged from 0.81 and 0.68 in wet and dry years, respectively. In general, the dry surface conditions dominated in this poplar plantation ecosystem regardless of soil water availability suggesting that fast-growing and water use-intensive species like poplar plantations are poorly adapted for the water limited region.

  8. The DNA damage checkpoint response to replication stress: A Game of Forks.

    Directory of Open Access Journals (Sweden)

    Rachel eJossen

    2013-03-01

    Full Text Available Conditions challenging replication fork progression, collectively referred to as replication stress, represent a major source of genomic instability and are associated to cancer onset. The replication checkpoint, a specialized branch of the DNA damage checkpoint, monitors fork problems and triggers a cellular response aimed at preserving genome integrity. Here, we review the mechanisms by which the replication checkpoint monitors and responds to replication stress, focusing on the checkpoint-mediated pathways contributing to protect replication fork integrity. We discuss how cells achieve checkpoint signaling inactivation once replication stress is overcome and how a failure to timely revert checkpoint-mediated changes in cellular physiology might impact on replication dynamics and genome integrity. We also highlight the checkpoint function as an anti-cancer barrier preventing cells malignant transformation following oncogene-induced replication stress.

  9. The Coefficient of the Voltage Induced Frequency Shift Measurement on a Quartz Tuning Fork

    Directory of Open Access Journals (Sweden)

    Yubin Hou

    2014-11-01

    Full Text Available We have measured the coefficient of the voltage induced frequency shift (VIFS of a 32.768 KHz quartz tuning fork. Three vibration modes were studied: one prong oscillating, two prongs oscillating in the same direction, and two prongs oscillating in opposite directions. They all showed a parabolic dependence of the eigen-frequency shift on the bias voltage applied across the fork, due to the voltage-induced internal stress, which varies as the fork oscillates. The average coefficient of the VIFS effect is as low as several hundred nano-Hz per millivolt, implying that fast-response voltage-controlled oscillators and phase-locked loops with nano-Hz resolution can be built.

  10. Multiple critical velocities in oscillatory flow of superfluid 4He due to quartz tuning forks

    Science.gov (United States)

    Schmoranzer, D.; Jackson, M. J.; Tsepelin, V.; Poole, M.; Woods, A. J.; Človečko, M.; Skrbek, L.

    2016-12-01

    We report recent investigations into the transition to turbulence in superfluid 4He, realized experimentally by measuring the drag forces acting on two custom-made quartz tuning forks with fundamental resonances at 6.5 kHz and 55.5 kHz, in the temperature range 10 mK to 2.17 K. In pure superfluid in the zero temperature limit, three distinct critical velocities were observed with both tuning forks. We discuss the significance of all critical velocities and associate the third critical velocity reported here with the development of large vortical structures in the flow, which thus starts to mimic turbulence in classical fluids. The interpretation of our results is directly linked to previous experimental work with oscillators such as tuning forks, grids, and vibrating wires, focusing on the behavior of purely superfluid 4He at very low temperatures.

  11. Pathological Changes of von Economo Neuron and Fork Neuron in Neuropsychiatric Diseases.

    Science.gov (United States)

    Liu, Jia; Wang, Lu-ning; Arzberger, Thomas; Zhu, Ming-wei

    2016-02-01

    von Economo neuron (VEN) is a bipolar neuron characterized by a large spindle-shaped soma. VEN is generally distributed in the layer V of anterior insular lobe and anterior cingulate cortex. Fork neuron is another featured bipolar neuron. In recent years,many studies have illustrated that VEN and fork neurons are correlated with complicated cognition such as self-consciousness and social emotion. Studies in the development and morpholigies of these two neurons as well as their pathological changes in various neurological and psychiatric disorders have found that the abnormal number and functions of VEN can cause corresponding dysfunctions in social recognition and emotions both during the neuro-developmental stages of childhood and during the nerve degeneration in old age stage. Therefore, more attentions should be paid on the research of VEN and fork neurons in neuropsychiatric diseases.

  12. Replication Fork Protection Factors Controlling R-Loop Bypass and Suppression.

    Science.gov (United States)

    Chang, Emily Yun-Chia; Stirling, Peter C

    2017-01-14

    Replication-transcription conflicts have been a well-studied source of genome instability for many years and have frequently been linked to defects in RNA processing. However, recent characterization of replication fork-associated proteins has revealed that defects in fork protection can directly or indirectly stabilize R-loop structures in the genome and promote transcription-replication conflicts that lead to genome instability. Defects in essential DNA replication-associated activities like topoisomerase, or the minichromosome maintenance (MCM) helicase complex, as well as fork-associated protection factors like the Fanconi anemia pathway, both appear to mitigate transcription-replication conflicts. Here, we will highlight recent advances that support the concept that normal and robust replisome function itself is a key component of mitigating R-loop coupled genome instability.

  13. 77 FR 66865 - Record of Decision for the Oil and Gas Management Plan, Big South Fork National River and...

    Science.gov (United States)

    2012-11-07

    ... National Park Service Record of Decision for the Oil and Gas Management Plan, Big South Fork National River....C. 4332(2)(C), the National Park Service (NPS) announces the availability of the Record of Decision (ROD) for the Oil and Gas Management Plan (Plan) for Big South Fork National River and Recreation Area...

  14. 76 FR 50171 - Notice of Intent To Prepare an Environmental Impact Statement for the Henrys Fork Salinity...

    Science.gov (United States)

    2011-08-12

    ... the Henrys Fork Salinity Control Project Plan, Sweetwater and Uinta Counties, WY; Daggett and Summit... Statement (EIS) for the Henrys Fork Salinity Control Project Plan (SCPP). The NRCS will be the lead agency... Improvements'' alternative assumes a salinity control project will be implemented. Existing financial...

  15. 33 CFR 165.552 - Security Zone; Oyster Creek Generation Station, Forked River, Ocean County, New Jersey.

    Science.gov (United States)

    2010-07-01

    ... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Security Zone; Oyster Creek... Coast Guard District § 165.552 Security Zone; Oyster Creek Generation Station, Forked River, Ocean... the Forked River in the vicinity of the Oyster Creek Generation Station, bounded by a line...

  16. Recombination occurs within minutes of replication blockage by RTS1 producing restarted forks that are prone to collapse

    Science.gov (United States)

    Nguyen, Michael O; Jalan, Manisha; Morrow, Carl A; Osman, Fekret; Whitby, Matthew C

    2015-01-01

    The completion of genome duplication during the cell cycle is threatened by the presence of replication fork barriers (RFBs). Following collision with a RFB, replication proteins can dissociate from the stalled fork (fork collapse) rendering it incapable of further DNA synthesis unless recombination intervenes to restart replication. We use time-lapse microscopy and genetic assays to show that recombination is initiated within ∼10 min of replication fork blockage at a site-specific barrier in fission yeast, leading to a restarted fork within ∼60 min, which is only prevented/curtailed by the arrival of the opposing replication fork. The restarted fork is susceptible to further collapse causing hyper-recombination downstream of the barrier. Surprisingly, in our system fork restart is unnecessary for maintaining cell viability. Seemingly, the risk of failing to complete replication prior to mitosis is sufficient to warrant the induction of recombination even though it can cause deleterious genetic change. DOI: http://dx.doi.org/10.7554/eLife.04539.001 PMID:25806683

  17. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level

    National Research Council Canada - National Science Library

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-01-01

    ...) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground...

  18. Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12.

    OpenAIRE

    Sandler, S J

    2000-01-01

    In Escherichia coli, the primosome assembly proteins, PriA, PriB, PriC, DnaT, DnaC, DnaB, and DnaG, are thought to help to restart DNA replication forks at recombinational intermediates. Redundant functions between priB and priC and synthetic lethality between priA2::kan and rep3 mutations raise the possibility that there may be multiple pathways for restarting replication forks in vivo. Herein, it is shown that priA2::kan causes synthetic lethality when placed in combination with either Delt...

  19. Reconnaissance for radioactive deposits in the Nixon Fork mining district, Medfra Quadrangle, central Alaska, 1949

    Science.gov (United States)

    White, Max G.; Stevens, John M.

    1953-01-01

    Reconnaissance for radioactive deposits in the Nixon Fork mining district, Medfra quadrangle, central Alaska, in 1949 disclosed the occurrence of allanite in sampled containing as much as 0.05 percent equivalent uranium from the dump of the Whalen mine; the presence of radioactive parisite (a rare-earth fluocarbonate) in a highly altered limestone containing about 0.025 percent equivalent uranium near the Whalen shaft; and radioactive idocrase in samples of altered garnet rock with about 0.025 percent equivalent uranium, form the Crystal shaft of the Nixon Fork mine. This radioactivity is due mostly to thorium rather than uranium. Placer concentrates

  20. Predicting yields of short-rotation hybrid poplar (Populus spp.) for the United States through model-data synthesis.

    Science.gov (United States)

    Wang, Dan; LeBauer, David; Dietze, Michael

    2013-06-01

    Hybrid poplar (Populus spp.) is an important biomass crop being evaluated for cellulosic ethanol production. Predictions of poplar growth, rotation period, and soil carbon sequestration under various growing conditions, soils, and climates are critical for farmers and managers planning to establish short-rotation forestry (SRF) plantations. In this study, we used an ecoinformatics workflow, the Predictive Ecosystem Analyzer (PEcAn), to integrate literature data and field measurements into the Ecosystem Demography 2 (ED2) model to estimate yield potential of poplar plantations. Within PEcAn 164 records of seven different traits from the literature were assimilated using a Bayesian meta-analysis. Next, variance decomposition identified seven variables for further constraint that contributed > 80% to the uncertainty in modeled yields: growth respiration, dark respiration, quantum efficiency, mortality coefficient, water conductance, fine-root allocation, and root turnover rate. Assimilation of observed yields further constrained uncertainty in model parameters (especially dark respiration and root turnover rate) and biomass estimates. Additional measurements of growth respiration, mortality, water conductance, and quantum efficiency would provide the most efficient path toward further constraint of modeled yields. Modeled validation demonstrated that ED2 successfully captured the interannual and spatial variability of poplar yield observed at nine independent sites. Site-level analyses were conducted to estimate the effect of land use change to SRF poplar on soil C sequestration compared to alternate land uses. These suggest that poplar plantations became a C sink within 18 years of conversion from corn production or existing forest. Finally, poplar yields were estimated for the contiguous United States at a half degree resolution in order to determine potential productivity, estimate the optimal rotation period, and compare poplar to perennial grass yields. This

  1. Analyzing the impact of climate and management factors on the productivity and soil carbon sequestration of poplar plantations.

    Science.gov (United States)

    Wang, Dan; Fan, Jiazhi; Jing, Panpan; Cheng, Yong; Ruan, Honghua

    2016-01-01

    It is crucial to investigate how climate and management factors impact poplar plantation production and soil carbon sequestration interactively. We extracted above-ground net primary production (ANPP), climate and management factors from peer-reviewed journal articles and analyzed impact of management factor and climate on the mean annual increment (MAI) of poplar ANPP statistically. Previously validated mechanistic model (ED) is used to perform case simulations for managed poplar plantations under different harvesting rotations. The meta-analysis indicate that the dry matter MAI was 6.3 Mg ha(-1) yr(-1) (n=641, sd=4.9) globally, and 5.1 (n=292, sd=4.0), 8.1 (n=224, sd=4.7) and 4.4 Mg ha(-1) yr(-1) (n=125, sd=3.2) in Europe, the US and China, respectively. Poplar MAI showed a significant response to GDD, precipitation and planting density and formed a quadratic relationship with stand age. The low annual production for poplar globally was probably caused by suboptimal water availability, rotation length and planting density. SEM attributes the variance of poplar growth rate more to climate than to management effects. Case simulations indicated that longer rotation cycle significantly increased soil carbon storage. Findings of this work suggests that management factor of rotation cycle alone could have dramatic impact on the above ground growth, as well as on the soil carbon sequestration of poplar plantations and will be helpful to quantify the long-term carbon sequestration through short rotation plantation. The findings of this study are useful in guiding further research, policy and management decisions towards sustainable poplar plantations. Copyright © 2015 Elsevier Inc. All rights reserved.

  2. Bacterial microflora isolated from the bark surface of poplars growing in areas where air pollution is very high

    Directory of Open Access Journals (Sweden)

    Krystyna Przybył

    2015-05-01

    Full Text Available In the autumn of 1976 bacteria of the genera Bacillus, Pseudomonas, Flavobacterium, Erwinia and Cellulomonas were isolated from the bark surface of poplars growing in protective belts around several industrial plants. It was found that the qualitative and quantitative composition of the surface bacterial microflora changes in dependence on the degree of resistance of the poplars to the action of the dust emitted by the industrial establishment and containing high amounts of heavy metals.

  3. Can the agricultural AquaCrop model simulate water use and yield of a poplar short-rotation coppice?

    Science.gov (United States)

    Horemans, Joanna A; Van Gaelen, Hanne; Raes, Dirk; Zenone, Terenzio; Ceulemans, Reinhart

    2017-06-01

    We calibrated and evaluated the agricultural model AquaCrop for the simulation of water use and yield of a short-rotation coppice (SRC) plantation with poplar (Populus) in East Flanders (Belgium) during the second and the third rotation (first 2 years only). Differences in crop development and growth during the course of the rotations were taken into account during the model calibration. Overall, the AquaCrop model showed good performance for the daily simulation of soil water content (R(2) of 0.57-0.85), of green canopy cover (R(2) > 0.87), of evapotranspiration (ET; R(2) > 0.76), and of potential yield. The simulated, total yearly water use of the SRC ranged between 55% and 85% of the water use of a reference grass ecosystem calculated under the same environmental conditions. Crop transpiration was between 67% and 93% of total ET, with lower percentages in the first than in the second year of each rotation. The observed (dry mass) yield ranged from 6.61 to 14.76 Mg ha(-1) yr(-1). A yield gap of around 30% was observed between the second and the third rotation, as well as between simulated and observed yield during the third rotation. This could possibly be explained by the expansion of the understory (weed) layer; the relative cover of understory weeds was 22% in the third year of the third rotation. The agricultural AquaCrop model simulated total water use and potential yield of the operational SRC in a reliable way. As the plantation was extensively managed, potential effects of irrigation and/or fertilization on ET and on yield were not considered in this study.

  4. Impact of 40 years poplar cultivation on soil carbon stocks and greenhouse gas fluxes

    Directory of Open Access Journals (Sweden)

    C. Ferré

    2005-08-01

    Full Text Available Within the JRC Kyoto Experiment in the Regional Park and UN-Biosphere Reserve "Parco Ticino" (North-Italy, near Pavia, the soil carbon stocks and fluxes of CO2, N2O, and CH4 were measured in a poplar plantation in comparison with a natural mesohygrophilous deciduous forest nearby, which represents the pristine land cover of the area. Soil fluxes were measured using the static and dynamic closed chamber techniques for CH4 N2O, and CO2, respectively. We made further a pedological study to relate the spatial variability found with soil parameters.

    Annual emission fluxes of N2O and CO2 and deposition fluxes of CH4 were calculated for the year 2003 for the poplar plantation and compared to those measured at the natural forest site. N2O emissions at the poplar plantation were 0.15$plusmn;0.1 g N2O m-2 y-1 and the difference to the emissions at the natural forest of 0.07±0.06 g N2O m-2 y-1 are partly due to a period of high emissions after the flooding of the site at the end of 2002. CH4 consumption at the natural forest was twice as large as at the poplar plantation. In comparison to the relict forest, carbon stocks in the soil under the poplar plantation were depleted by 61% of surface (10 cm carbon and by 25% down the profile under tillage (45 cm. Soil respiration rates were not significant different at both sites with 1608±1053 and 2200±791 g CO2 m-2 y-1 at the poplar plantation and natural forest, respectively, indicating that soil organic carbon is much more stable in the natural forest. In terms of the greenhouse gas budget, the non-CO2 gases contributed minor to the overall soil balance with only 0.9% (N2O and -0.3% (CH4 of CO2-eq emissions in the

  5. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level

    Science.gov (United States)

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-09-01

    The emission of isoprene and other biogenic volatile organic compounds from vegetation plays an important role in tropospheric ozone (O3) formation. The potentially large expansion of isoprene emitting species (e.g., poplars) for bioenergy production might, therefore, impact tropospheric O3 formation. Using the eddy covariance technique we have simultaneously measured fluxes isoprene, O3 and of CO2 from a poplar (Populus) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground level O3 concentrations. Our findings suggest that isoprene emissions from existing poplar-for-bioenergy plantations do not significantly affect the ground level of O3 concentration. Indeed the overall land in Europe covered with poplar plantations has not significantly changed over the last two decades despite policy incentives to produce bioenergy crops. The current surface area of isoprene emitting poplars-for-bioenergy remains too limited to significantly enhance O3 concentrations and thus to be considered a potential threat for air quality and human health.

  6. Interaction between isoprene and ozone fluxes in a poplar plantation and its impact on air quality at the European level

    Science.gov (United States)

    Zenone, Terenzio; Hendriks, Carlijn; Brilli, Federico; Fransen, Erik; Gioli, Beniamio; Portillo-Estrada, Miguel; Schaap, Martijn; Ceulemans, Reinhart

    2016-01-01

    The emission of isoprene and other biogenic volatile organic compounds from vegetation plays an important role in tropospheric ozone (O3) formation. The potentially large expansion of isoprene emitting species (e.g., poplars) for bioenergy production might, therefore, impact tropospheric O3 formation. Using the eddy covariance technique we have simultaneously measured fluxes isoprene, O3 and of CO2 from a poplar (Populus) plantation grown for bioenergy production. We used the chemistry transport model LOTOS-EUROS to scale-up the isoprene emissions associated with the existing poplar plantations in Europe, and we assessed the impact of isoprene fluxes on ground level O3 concentrations. Our findings suggest that isoprene emissions from existing poplar-for-bioenergy plantations do not significantly affect the ground level of O3 concentration. Indeed the overall land in Europe covered with poplar plantations has not significantly changed over the last two decades despite policy incentives to produce bioenergy crops. The current surface area of isoprene emitting poplars-for-bioenergy remains too limited to significantly enhance O3 concentrations and thus to be considered a potential threat for air quality and human health. PMID:27615148

  7. Epigenetic Diversity of Clonal White Poplar (Populus alba L. Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?

    Directory of Open Access Journals (Sweden)

    Francesco Guarino

    Full Text Available The widespread poplar populations of Sardinia are vegetatively propagated and live in different natural environments forming large monoclonal stands. The main goals of the present study were: i to investigate/measure the epigenetic diversity of the poplar populations by determining their DNA methylation status; ii to assess if and how methylation status influences population clustering; iii to shed light on the changes that occur in the epigenome of ramets of the same poplar clone. To these purposes, 83 white poplar trees were sampled at different locations on the island of Sardinia. Methylation sensitive amplified polymorphism analysis was carried out on the genomic DNA extracted from leaves at the same juvenile stage. The study showed that the genetic biodiversity of poplars is quite limited but it is counterbalanced by epigenetic inter-population molecular variability. The comparison between MspI and HpaII DNA fragmentation profiles revealed that environmental conditions strongly influence hemi-methylation of the inner cytosine. The variable epigenetic status of Sardinian white poplars revealed a decreased number of population clusters. Landscape genetics analyses clearly demonstrated that ramets of the same clone were differentially methylated in relation to their geographic position. Therefore, our data support the notion that studies on plant biodiversity should no longer be restricted to genetic aspects, especially in the case of vegetatively propagated plant species.

  8. Exploring the Role of Plant Genetics to Enhance Soil Carbon Sequestration in Hybrid Poplar Plantations

    Science.gov (United States)

    Wullschleger, S. D.; Garten, C. T.; Classen, A. T.

    2008-12-01

    Atmospheric CO2 concentrations have increased in recent decades and are projected to increase even further during the coming century. These projections have prompted scientists and policy-makers to consider how plants and soils can be used to stabilize CO2 concentrations. Although storing carbon in terrestrial ecosystems represents an attractive near-term option for mitigating rising atmospheric CO2 concentrations, enhancing the sequestration potential of managed systems will require advancements in understanding the fundamental mechanisms that control rates of carbon transfer and turnover in plants and soils. To address this challenge, a mathematical model was constructed to evaluate how changes in particular plant traits and management practices could affect soil carbon storage beneath hybrid poplar (Populus) plantations. The model was built from four sub-models that describe aboveground biomass, root biomass, soil carbon dynamics, and soil nitrogen transformations for trees growing throughout a user-defined rotation. Simulations could be run over one or multiple rotations. A sensitivity analysis of the model indicated changes in soil carbon storage were affected by variables that could be linked to hybrid poplar traits like rates of aboveground production, partitioning of carbon to coarse and fine roots, and rates of root decomposition. A higher ratio of belowground to aboveground production was especially important and correlated directly with increased soil carbon storage. Faster decomposition rates for coarse and fine dead roots resulted in a greater loss of carbon to the atmosphere as CO2 and less residual organic carbon for transfer to the fast soil carbon pool. Hence, changes in root chemistry that prolonged dead root decomposition rates, a trait that is under potential genetic control, were predicted to increase soil carbon storage via higher soil carbon inputs. Nitrogen limitation of both aboveground biomass production and soil carbon sequestration was

  9. East Asia Rolls On

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The economic recovery in East Asia remains unchanged on its upward trajectory despite the earthquake and devastating tsunami in Japan on March 11.Growth in East Asia slowed after a sharp rebound from the global financial crisis but is improving nonetheless.The World Bank’s East Asia and Pacific Economic Update issued on March 21 projects real GDP growth in East Asia will be smaller than that of 2010 in the following two years.Besides future East Asian economic trends,the report also discusses the impact of the Japanese catastrophe.Edited excerpts follow:

  10. 76 FR 46721 - Salmon-Challis National Forest, ID; Upper North Fork HFRA Ecosystem Restoration Project...

    Science.gov (United States)

    2011-08-03

    ... this project area to improve the health of the ecosystem and reach the desired future condition. DATES...; ] DEPARTMENT OF AGRICULTURE Forest Service Salmon-Challis National Forest, ID; Upper North Fork HFRA Ecosystem... the potential for large-scale, high-intensity wildfires that threaten human life, property, and...

  11. Numerical performance analysis of quartz tuning fork-based force sensors

    Science.gov (United States)

    Dagdeviren, Omur E.; Schwarz, Udo D.

    2017-01-01

    Quartz tuning fork-based force sensors where one prong is immobilized onto a holder while the other one is allowed to oscillate freely (‘qPlus’ configuration) are in widespread use for high-resolution scanning probe microscopy applications. Due to the small size of the tuning forks (≈3 mm) and the complexity of the sensor assemblies, the reliable and repeatable manufacturing of the sensors has been challenging. In this paper, we investigate the contribution of the amount and location of the epoxy glue used to attach the tuning fork to its holder on the sensor’s performance. Towards this end, we use finite element analysis to model the entire sensor assembly and to perform static and dynamic numerical simulations. Our analysis reveals that increasing the thickness of the epoxy layer between prong and holder results in a decrease of the sensor’s spring constant, eigenfrequency, and quality factor while showing an increasing deviation from oscillation in its primary modal shape. Adding epoxy at the sides of the tuning fork also leads to a degradation of the quality factor even though in this case, spring constant and eigenfrequency rise in tandem with a lessening of the deviation from its ideal modal shape.

  12. 16 CFR Figure 1 to Part 1512 - Bicycle Front Fork Cantilever Bending Test Rig

    Science.gov (United States)

    2010-01-01

    ... 16 Commercial Practices 2 2010-01-01 2010-01-01 false Bicycle Front Fork Cantilever Bending Test Rig 1 Figure 1 to Part 1512 Commercial Practices CONSUMER PRODUCT SAFETY COMMISSION FEDERAL HAZARDOUS SUBSTANCES ACT REGULATIONS REQUIREMENTS FOR BICYCLES Pt. 1512, Fig. 1 Figure 1 to Part 1512—Bicycle...

  13. 77 FR 71611 - Land Acquisitions; North Fork Rancheria of Mono Indians of California

    Science.gov (United States)

    2012-12-03

    ... Tribe's current government headquarters, which are located in the town of North Fork, Madera County, California, described as: Real property in the City of UNINCORPORATED AREA, County of Madera, State of..., AND 8 of PARCEL MAP 3426 IN THE UNINCORPORATED AREA OF THE COUNTY OF MADERA, STATE OF CALIFORNIA, AS...

  14. From farm to fork and further. Research tackling the grand challenge of food safety in Europe

    NARCIS (Netherlands)

    Ridder, M. de; Polchar, J.; Gehem, M.

    2012-01-01

    The study From Farm to Fork and Further shows how, as traditional causes of food safety problems such as basic hygiene are successfully dealt with, future food safety risks become ever harder to manage. European countries may have the highest food safety standards, however the trends that go hand in

  15. Environmental Assessment, Demolition of Alpha Ramp Grand Forks Air Force Base, North Dakota

    Science.gov (United States)

    2007-01-01

    support active cultivation of grass and alfalfa hay, and other areas are undergoing rehabilitation for future haying operations. Any cropping practices...January 2004). 3.10 Land Use Land use in Grand Forks County consists primarily of cultivated crops, including spring wheat, barley, sunflowers

  16. Final Environmental Assessment Demolition of Alpha Ramp, Grand Forks Air Force Base, North Dakota

    Science.gov (United States)

    2007-01-01

    unimproved areas at GFAFB have been used to support active cultivation of grass and alfalfa hay, and other areas are undergoing rehabilitation for...Native American areas of concern on GFAFB (USAF, January 2004). 3.10 Land Use Land use in Grand Forks County consists primarily of cultivated crops

  17. Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks

    DEFF Research Database (Denmark)

    Sotiriou, Sotirios K; Kamileri, Irene; Lugli, Natalia

    2016-01-01

    Human cancers are characterized by the presence of oncogene-induced DNA replication stress (DRS), making them dependent on repair pathways such as break-induced replication (BIR) for damaged DNA replication forks. To better understand BIR, we performed a targeted siRNA screen for genes whose depl...

  18. Bending Forks and Wagging Dogs--It's about the DNA 3' Tail.

    Science.gov (United States)

    Tsutakawa, Susan E; Tainer, John A

    2015-06-18

    Protecting, reversing, and remodeling stalled replication forks are critical to genome stability and require coordinating DNA replication, remodeling, and repair. In this issue, Kile et al. (2015) find that unexpected HLTF specificity for DNA's 3'-hydroxyl tail helps control these biological functions. Copyright © 2015 Elsevier Inc. All rights reserved.

  19. Bending forks and wagging dogs – it’s about the DNA 3′ tail

    Science.gov (United States)

    Tsutakawa, Susan E.; Tainer, John A.

    2017-01-01

    Protecting, reversing, and remodeling stalled replication forks are critical to genome stability and require coordinating DNA replication, remodeling, and repair. In this issue, Kile et al. (2015) find unexpected HLTF specificity for DNA’s 3′-hydroxyl tail helps control these biological functions. PMID:26091346

  20. MediaMill: Fast and effective video search using the ForkBrowser

    NARCIS (Netherlands)

    de Rooij, O.; Snoek, C.G.M.; Worring, M.

    2008-01-01

    In this technical demonstration we showcase the MediaMill ForkBrowser for video retrieval. It embeds multiple query methods into a single browsing environment. We show that users can switch query methods on demand without the need to adapt to a different interface. This allows for fast and effective

  1. SUMO modification regulates BLM and RAD51 interaction at damaged replication forks.

    Directory of Open Access Journals (Sweden)

    Karen J Ouyang

    2009-12-01

    Full Text Available The gene mutated in Bloom's syndrome, BLM, is important in the repair of damaged replication forks, and it has both pro- and anti-recombinogenic roles in homologous recombination (HR. At damaged forks, BLM interacts with RAD51 recombinase, the essential enzyme in HR that catalyzes homology-dependent strand invasion. We have previously shown that defects in BLM modification by the small ubiquitin-related modifier (SUMO cause increased gamma-H2AX foci. Because the increased gamma-H2AX could result from defective repair of spontaneous DNA damage, we hypothesized that SUMO modification regulates BLM's function in HR repair at damaged forks. To test this hypothesis, we treated cells that stably expressed a normal BLM (BLM+ or a SUMO-mutant BLM (SM-BLM with hydroxyurea (HU and examined the effects of stalled replication forks on RAD51 and its DNA repair functions. HU treatment generated excess gamma-H2AX in SM-BLM compared to BLM+ cells, consistent with a defect in replication-fork repair. SM-BLM cells accumulated increased numbers of DNA breaks and were hypersensitive to DNA damage. Importantly, HU treatment failed to induce sister-chromatid exchanges in SM-BLM cells compared to BLM+ cells, indicating a specific defect in HR repair and suggesting that RAD51 function could be compromised. Consistent with this hypothesis, RAD51 localization to HU-induced repair foci was impaired in SM-BLM cells. These data suggested that RAD51 might interact noncovalently with SUMO. We found that in vitro RAD51 interacts noncovalently with SUMO and that it interacts more efficiently with SUMO-modified BLM compared to unmodified BLM. These data suggest that SUMOylation controls the switch between BLM's pro- and anti-recombinogenic roles in HR. In the absence of BLM SUMOylation, BLM perturbs RAD51 localization at damaged replication forks and inhibits fork repair by HR. Conversely, BLM SUMOylation relieves its inhibitory effects on HR, and it promotes RAD51 function.

  2. Force-gradient-induced mechanical dissipation of quartz tuning fork force sensors used in atomic force microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Castellanos-Gomez, A. [Departamento de Fisica de la Materia Condensada (C-III), Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain); Agrait, N. [Departamento de Fisica de la Materia Condensada (C-III), Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain); Instituto Universitario de Ciencia de Materiales ' Nicolas Cabrera' , Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain); Instituto Madrileno de Estudios Avanzados en Nanociencia, IMDEA-Nanociencia, 28049 Madrid (Spain); Rubio-Bollinger, G., E-mail: gabino.rubio@uam.es [Departamento de Fisica de la Materia Condensada (C-III), Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain); Instituto Universitario de Ciencia de Materiales ' Nicolas Cabrera' , Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain)

    2011-02-15

    We have studied the dynamics of quartz tuning fork resonators used in atomic force microscopy taking into account the mechanical energy dissipation through the attachment of the tuning fork base. We find that the tuning fork resonator quality factor changes even in the case of a purely elastic sensor-sample interaction. This is due to the effective mechanical imbalance of the tuning fork prongs induced by the sensor-sample force gradient, which in turn has an impact on dissipation through the attachment of the resonator base. This effect may yield a measured dissipation signal that can be different from the one exclusively related to the dissipation between the sensor and the sample. We also find that there is a second-order term in addition to the linear relationship between the sensor-sample force gradient and the resonance frequency shift of the tuning fork that is significant even for force gradients usually present in atomic force microscopy, which are in the range of tens of N/m. -- Research Highlights: {yields} Dynamics of miniature tuning fork force sensors: a mechanical model. {yields} Non-linear relationship between resonance frequency shift and applied force gradient. {yields} An apparent mechanical dissipation channel opens even for purely conservative tip-sample interactions. {yields} qPlus tuning forks configuration has lower Q factor but straightforward dynamics.

  3. THE PHYSICAL AND CHEMICAL CHARACTERISTICS OF THE LAKE WETLANDS IN THE CENTRAL GROUP OF THE EAST CARPATHIAN MOUNTAINS

    Directory of Open Access Journals (Sweden)

    Gheorghe ROMANESCU

    2009-06-01

    Full Text Available In order to study the lake wetlands in the Central Group of the East Carpathian Mountains, we have chosen 6 anthropic lakes and 3 natural ones. The lake wetlands develop mainly in the area upstream the lake tail, at the outlet of the main watercourses. The most developed wetland areas can be found in Roşu Lake, at the mouth of the rivulets Licaş and Suhard, and in the area of Crucii Lake, appeared recently following a landslide. The dominant herbaceous vegetation is made up of bulrush, reeds and wetlands lawns, while the tree vegetation is made up of alders, willows and poplars.

  4. Phytotoxicity of fresh and weathered diesel and gasoline to willow and poplar trees

    DEFF Research Database (Denmark)

    Trapp, Stefan; Köhler, A.; Larsen, L.C.

    2001-01-01

    The toxicity of fresh and weathered gasoline and diesel fuel to willow and poplar trees was studied using a tree transpiration toxicity test. Soils were taken from an abandoned filling station. Concentrations in the samples were measured as the sum of hydrocarbons from C5 to C10 (gasoline) and C12...... to C28 (diesel). Concentrations ranged from 145 to 921 mg/kg gasoline and 143 to 18231 mg/kg diesel. The correlation between log soil concentration and toxicity to willows (Salix viminalis x schwerinii) was highly significant for the diesel fraction (r2=0.81, n=19) and for the sum of hydrocarbons (r2...... diesel and gasoline contaminated soils, and two willow and one poplar species (S. viminalis, S. alba and Populus nigra). Fresh diesel at about 1000 mg/kg showed no effect on S. alba, although P. nigra was more sensitive. 10000 mg/kg seriously affected the transpiration of all species, silver willow (S...

  5. Cometabolic degradation of trichloroethylene by Burkholderia cepacia G4 with poplar leaf homogenate.

    Science.gov (United States)

    Kang, Jun Won; Doty, Sharon Lafferty

    2014-07-01

    Trichloroethylene (TCE), a chlorinated organic solvent, is one of the most common and widespread groundwater contaminants worldwide. Among the group of TCE-degrading aerobic bacteria, Burkholderia cepacia G4 is the best-known representative. This strain requires the addition of specific substrates, including toluene, phenol, and benzene, to induce the enzymes to degrade TCE. However, the substrates are toxic and introducing them into the soil can result in secondary contamination. In this study, poplar leaf homogenate containing natural phenolic compounds was tested for the ability to induce the growth of and TCE degradation by B. cepacia G4. The results showed that the G4 strain could grow and degrade TCE well with the addition of phytochemicals. The poplar leaf homogenate also functioned as an inducer of the toluene-ortho-monooxygenase (TOM) gene in B. cepacia G4.

  6. Unligated Okazaki Fragments Induce PCNA Ubiquitination and a Requirement for Rad59-Dependent Replication Fork Progression.

    Directory of Open Access Journals (Sweden)

    Hai Dang Nguyen

    Full Text Available Deficiency in DNA ligase I, encoded by CDC9 in budding yeast, leads to the accumulation of unligated Okazaki fragments and triggers PCNA ubiquitination at a non-canonical lysine residue. This signal is crucial to activate the S phase checkpoint, which promotes cell cycle delay. We report here that a pol30-K107 mutation alleviated cell cycle delay in cdc9 mutants, consistent with the idea that the modification of PCNA at K107 affects the rate of DNA synthesis at replication forks. To determine whether PCNA ubiquitination occurred in response to nicks or was triggered by the lack of PCNA-DNA ligase interaction, we complemented cdc9 cells with either wild-type DNA ligase I or a mutant form, which fails to interact with PCNA. Both enzymes reversed PCNA ubiquitination, arguing that the modification is likely an integral part of a novel nick-sensory mechanism and not due to non-specific secondary mutations that could have occurred spontaneously in cdc9 mutants. To further understand how cells cope with the accumulation of nicks during DNA replication, we utilized cdc9-1 in a genome-wide synthetic lethality screen, which identified RAD59 as a strong negative interactor. In comparison to cdc9 single mutants, cdc9 rad59Δ double mutants did not alter PCNA ubiquitination but enhanced phosphorylation of the mediator of the replication checkpoint, Mrc1. Since Mrc1 resides at the replication fork and is phosphorylated in response to fork stalling, these results indicate that Rad59 alleviates nick-induced replication fork slowdown. Thus, we propose that Rad59 promotes fork progression when Okazaki fragment processing is compromised and counteracts PCNA-K107 mediated cell cycle arrest.

  7. Mechanism of chromosomal DNA replication initiation and replication fork stabilization in eukaryotes.

    Science.gov (United States)

    Wu, LiHong; Liu, Yang; Kong, DaoChun

    2014-05-01

    Chromosomal DNA replication is one of the central biological events occurring inside cells. Due to its large size, the replication of genomic DNA in eukaryotes initiates at hundreds to tens of thousands of sites called DNA origins so that the replication could be completed in a limited time. Further, eukaryotic DNA replication is sophisticatedly regulated, and this regulation guarantees that each origin fires once per S phase and each segment of DNA gets duplication also once per cell cycle. The first step of replication initiation is the assembly of pre-replication complex (pre-RC). Since 1973, four proteins, Cdc6/Cdc18, MCM, ORC and Cdt1, have been extensively studied and proved to be pre-RC components. Recently, a novel pre-RC component called Sap1/Girdin was identified. Sap1/Girdin is required for loading Cdc18/Cdc6 to origins for pre-RC assembly in the fission yeast and human cells, respectively. At the transition of G1 to S phase, pre-RC is activated by the two kinases, cyclindependent kinase (CDK) and Dbf4-dependent kinase (DDK), and subsequently, RPA, primase-polα, PCNA, topoisomerase, Cdc45, polδ, and polɛ are recruited to DNA origins for creating two bi-directional replication forks and initiating DNA replication. As replication forks move along chromatin DNA, they frequently stall due to the presence of a great number of replication barriers on chromatin DNA, such as secondary DNA structures, protein/DNA complexes, DNA lesions, gene transcription. Stalled forks must require checkpoint regulation for their stabilization. Otherwise, stalled forks will collapse, which results in incomplete DNA replication and genomic instability. This short review gives a concise introduction regarding the current understanding of replication initiation and replication fork stabilization.

  8. Tree water use and rainfall partitioning in a mature poplar-pasture system.

    Science.gov (United States)

    Guevara-Escobar, A.; Edwards, W. R. N.; Morton, R. H.; Kemp, P. D.; Mackay, A. D.

    2000-01-01

    Traditionally, poplars (Populus) have been planted to control erosion on New Zealand's hill-slopes, because of their capacity to dry out and bind together the soil, by reducing effective rainfall and increasing evapotranspiration and soil strength. However, the effect of widely spaced poplars on the partitioning of soil water and rainfall has not been reported. This study determined rainfall partitioning for 18 mid-spring days in a mature P. deltoides (Bart. ex Marsh, Clone I78)-pasture association (37 stems per hectare, unevenly spaced at 16.4 +/- 0.4 m) and compared it with a traditional open pasture system in grazed areas of a hill environment. Tree transpiration was measured by the heat pulse technique. A time-driven mathematical model was used to set a zero offset, adjust anomalous values and describe simultaneous sap velocity time courses of trees. The model showed that daylight sap flow velocities can be represented with a nonlinear Beta function (R(2) > 0.98), and differences in the parameters representing the initiation, duration and conformation of the sap velocity can be tested statistically to discern tree transpiration differences during the day. Evapotranspiration was greater for the poplar-pasture association than for the open pasture (2.7-3.0 versus 2.2 mm day(-1)). The tree canopy alone contributed 0.92 mm day(-1) as transpiration and 1.37 mm day(-1) as interception, whereas evapotranspiration of the pasture understory was only 0.4-0.6 mm day(-1). Despite the higher water use of the poplar-pasture association, soil water in the 0-300 mm soil stratum was higher than, or similar to, that of the open pasture. Tree shading decreased evapotranspiration and pasture accumulation under the trees.

  9. Variation in Genomic Methylation in Natural Populations of Chinese White Poplar

    OpenAIRE

    Kaifeng Ma; Yuepeng Song; Xiaohui Yang; Zhiyi Zhang; Deqiang Zhang

    2013-01-01

    BACKGROUND: It is thought that methylcytosine can be inherited through meiosis and mitosis, and that epigenetic variation may be under genetic control or correlation may be caused by neutral drift. However, DNA methylation also varies with tissue, developmental stage, and environmental factors. Eliminating these factors, we analyzed the levels and patterns, diversity and structure of genomic methylcytosine in the xylem of nine natural populations of Chinese white poplar. PRINCIPAL FINDINGS: O...

  10. Environmental profile of ethanol from poplar biomass as transport fuel in Southern Europe

    Energy Technology Data Exchange (ETDEWEB)

    Gonzalez-Garcia, Sara; Moreira, M. Teresa; Feijoo, Gumersindo [Department of Chemical Engineering, School of Engineering, University of Santiago de Compostela, 15782 Santiago de Compostela (Spain); Gasol, Carles M. [SosteniPrA (UAB-IRTA), Institute of Environmental Science and Technology (ICTA), Autonomous University of Barcelona (UAB), 08193 Bellaterra, Barcelona (Spain); Gabarrell, Xavier; Rieradevall, Joan [SosteniPrA (UAB-IRTA), Institute of Environmental Science and Technology (ICTA), Autonomous University of Barcelona (UAB), 08193 Bellaterra, Barcelona (Spain); Chemical Engineering Department, Autonomous University of Barcelona (UAB), 08193 Bellaterra, Barcelona (Spain)

    2010-05-15

    Liquid biofuels provide one of the few options for fossil fuel substitution in the short to medium-term and they are strongly being promoted by the European Union as transport fuel (such as ethanol) since they have the potential to offer both greenhouse gas (GHG) savings and energy security. A ''well to wheel'' analysis has been conducted for poplar based ethanol by means of the Life Cycle Assessment (LCA) approach. The aim of the analysis is to assess the environmental performance of three ethanol applications (E10, E85 and E100) in comparison with conventional gasoline. To compare the environmental profiles, the study addressed the impact potentials per kilometre driven by a middle size passenger car, taking into account the performance difference between ethanol blends and gasoline. According to the results of this study, fuel ethanol derived from poplar biomass may help to reduce the contributions to global warming, abiotic resources depletion and ozone layer depletion up to 62%, 72% and 36% respectively. Reductions of fossil fuel extraction of up to 80% could be achieved when pure ethanol is used. On the contrary, contributions to other impact categories would be increased, specifically to acidification and eutrophication. In both categories, ethanol based blends are less environmentally friendly than conventional gasoline due to the higher impact from the upstream activities. Research focussed on the reduction of the environmental impacts should be pointed forward poplar cultivation as well as ethanol conversion plant (enzyme manufacturing, energy production and distillation). In this study poplar cultivation was really intensive in order to obtain a high yield. Strategic planning according to the location of the crops and its requirements should help to reduce these impacts from its cultivation. (author)

  11. Interaction of nitrogen nutrition and salinity in Grey poplar (Populus tremula x alba).

    Science.gov (United States)

    Ehlting, B; Dluzniewska, P; Dietrich, H; Selle, A; Teuber, M; Hänsch, R; Nehls, U; Polle, A; Schnitzler, J-P; Rennenberg, H; Gessler, A

    2007-07-01

    Salinity represents an increasing environmental problem in managed ecosystems. Populus spp. is widely used for wood production by short-rotation forestry in fertilized plantations and can be grown on saline soil. Because N fertilization plays an important role in salt tolerance, we analysed Grey poplar (Populus tremula x alba, syn. Populus canescens) grown with either 1 mM nitrate or ammonium subjected to moderate 75 mM NaCl. The impact of N nutrition on amelioration of salt tolerance was analysed on different levels of N metabolism such as N uptake, assimilation and N (total N, proteins and amino compounds) accumulation. Na concentration increased in all tissues over time of salt exposure. The N nutrition-dependent effects of salt exposure were more intensive in roots than in leaves. Application of salt reduced root increment as well as stem height increase and, at the same time, increased the concentration of total amino compounds more intensively in roots of ammonium-fed plants. In leaves, salt treatment increased concentrations of total N more intensively in nitrate-fed plants and concentrations of amino compounds independently of N nutrition. The major changes in N metabolism of Grey poplar exposed to moderate salt concentrations were detected in the significant increase of amino acid concentrations. The present results indicate that N metabolism of Grey poplar exposed to salt performed better when the plants were fed with nitrate instead of ammonium as sole N source. Therefore, nitrate fertilization of poplar plantations grown on saline soil should be preferred.

  12. RNA-SEQ reveals transcriptional level changes of poplar roots in different forms of nitrogen treatments

    Directory of Open Access Journals (Sweden)

    Chunpu eQu

    2016-02-01

    Full Text Available Poplar has emerged as a model plant for understanding molecular mechanisms of tree growth, development and response to environment. Long-term application of different forms of nitrogen (such as NO3--N and NH4+-N may cause morphological changes of poplar roots; however, the molecular level changes are still not well known. In this study, we analyzed the expression profiling of poplar roots treated by three forms of nitrogen: S1 (NH4+, S2 (NH4NO3 and S3 (NO3- by using RNA-SEQ technique. We found 463 genes significantly differentially expressed in roots by different N treatments, of which a total of 116 genes were found to differentially express between S1 and S2, 173 genes between S2 and S3, and 327 genes between S1 and S3. A cluster analysis shows significant difference in many transcription factor families and functional genes family under different N forms. Through an analysis of Mapman metabolic pathway, we found that the significantly differentially expressed genes are associated with fermentation, glycolysis and tricarboxylic acid cycle (TCA, secondary metabolism, hormone metabolism, and transport processing. Interestingly, we did not find significantly differentially expressed genes in N metabolism pathway, mitochondrial electron transport / ATP synthesis and mineral nutrition. We also found abundant candidate genes (20 transcription factors and 30 functional genes regulating morphology changes of poplar roots under the three N forms. The results obtained are beneficial to a better understanding of the potential molecular and cellular mechanisms regulating root morphology changes under different N treatments.

  13. Impact of Alkali Pretreatment on the Chemical Component Distribution and Ultrastructure of Poplar Cell Walls

    OpenAIRE

    Zhe Ji; Zhe Ling; Xun Zhang; Gui-Hua Yang; Feng Xu

    2014-01-01

    Alkali pretreatment is one of the leading pretreatment technologies for biofuel applications. The histochemical and structural characteristics of poplar cell walls were investigated before and after sodium hydroxide pretreatment (121 oC, 2%) to understand the alterations in biomass cellular structure, which were correlated with saccharification yield. Results showed that alkali pretreatment preferentially removed lignin from the S2 of fibers, which was similar to the behaviors of coniferyl al...

  14. Biochar as a substitute for vermiculite in potting mix for hybrid poplar

    Science.gov (United States)

    William L. Headlee; Catherine E. Brewer; Richard B. Hall

    2014-01-01

    The purpose of this study was to evaluate biochar as a substitute for vermiculite in potting mixes for unrooted vegetative cuttings of hybrid poplar as represented by the clone ‘NM6’ (Populus nigra L. × Populus suaveolens Fischer subsp. maximowiczii A. Henry). We compared three treatments (peat moss (control), peat moss mixed with vermiculite, and peat moss mixed with...

  15. The clonal root system of balsam poplar in upland sites of Quebec and Alberta.

    Science.gov (United States)

    Adonsou, Kokouvi E; DesRochers, Annie; Tremblay, Francine; Thomas, Barb R; Isabel, Nathalie

    2016-10-01

    Balsam poplar seeds are short-lived and require moist seedbeds soon after they are released to germinate. In addition to sexual reproduction, balsam poplar stands can regenerate clonally by root suckering. The origin of stands will in turn affect their genetic structure and root system architecture, which are poorly understood for upland forest stands. Three stands were hydraulically excavated in Quebec (moist) and Alberta (dry) to determine the origin of trees and to characterize root systems with respect to presence of parental roots and root grafts connections. Clones were identified using single-nucleotide polymorphism (SNPs), and all stems, roots and root grafts were aged using dendrochronology techniques. All 82 excavated trees were of sucker origin, and four of the six stands contained a single clone. Parental root connections were found between 22% and 25% of excavated trees, and 53% and 48% of trees were linked with a root graft between the same or different clones, in Alberta and Quebec, respectively. Mean distance between trees connected by parental root was significantly lower than the distance between unconnected trees (0.47 ± 0.25 m vs. 3.14 ± 0.15 m and 1.55 ± 0.27 m vs. 4.25 ± 0.13 m) in Alberta and in Quebec, respectively. The excavations also revealed many dead stumps with live roots, maintained through root connections with live trees. This research highlights that balsam poplar growing in upland stands is a clonal species that can maintain relatively high genotypic diversity, with frequent root connections between trees at maturity. Maintaining an extensive root system through root connections increases the chances of a clone surviving when the above ground tree is dead and may also enhance the resilience of balsam poplar stands after disturbance.

  16. Sexual dimorphism floral microRNA profiling and target gene expression in andromonoecious poplar (Populus tomentosa.

    Directory of Open Access Journals (Sweden)

    Yuepeng Song

    Full Text Available Although the molecular basis of poplar sex-specific flower development remains largely unknown, increasing evidence indicates an essential role for microRNAs (miRNAs. The specific miRNA types and precise miRNA expression patterns in dioecious plant flower development remain unclear. Here, we used andromonoecious poplar, an exceptional model system, to eliminate the confounding effects of genetic background of dioecious plants. This system, combined with high-throughput sequencing and computational analysis, allowed us to characterize sex-specific miRNAomes from female and male flowers. Comparative miRNAome analysis combined with quantitative real-time PCR revealed the expression patterns of 27 miRNAs in poplar flower and showed that the targets of these miRNAs are involved in flower organogenesis, Ca(2+ transport, phytohormone synthesis and metabolism, and DNA methylation. This paper describes a complex regulatory network consisting of these miRNAs expressed in sex-specific flower development in a dioecious plant. The conserved and novel miRNA locations were annotated in the Populus trichocarpa genome. Among these, miRNA Pto-F70 and 4 targets are located in the sex-determination regions of chromosome XIX. Furthermore, two novel miRNAs, Pto-F47 and Pto-F68, were shown for the first time to be regulatory factors in phytohormone interactions. To our knowledge, this report is the first systematic investigation of sex-specific flower-related miRNAs and their targets in poplar, and it deepens our understanding of the important regulatory functions of miRNAs in female and male flower development in this dioecious plant.

  17. Oxidative lime pretreatment of high-lignin biomass: poplar wood and newspaper.

    Science.gov (United States)

    Chang, V S; Nagwani, M; Kim, C H; Holtzapple, M T

    2001-04-01

    Lime (Ca[OH]2) and oxygen (O2) were used to enhance the enzymatic digestibility of two kinds of high-lignin biomass: poplar wood and newspaper. The recommended pretreatment conditions for poplar wood are 150 degrees C, 6 h, 0.1 g of Ca(OH)2/g of dry biomass, 9 mL of water/g of dry biomass, 14.0 bar absolute oxygen, and a particle size of -10 mesh. Under these conditions, the 3-d reducing sugar yield of poplar wood using a cellulase loading of 5 filter paper units (FPU)/g of raw dry biomass increased from 62 to 565 mg of eq. glucose/g of raw dry biomass, and the 3-d total sugar (glucose + xylose) conversion increased from 6 to 77% of raw total sugars. At high cellulase loadings (e.g., 75 FPU/g of raw dry biomass), the 3-d total sugar conversion reached 97%. In a trial run with newspaper, using conditions of 140 degrees C, 3 h, 0.3 g of Ca(OH)2/g of dry biomass, 16 mL of water/g of dry biomass, and 7.1 bar absolute oxygen, the 3-d reducing sugar yield using a cellulase loading of 5 FPU/g of raw dry biomass increased from 240 to 565 mg of eq. glucose/g of raw dry biomass. A material balance study on poplar wood shows that oxidative lime pretreatment solubilized 38% of total biomass, including 78% of lignin and 49% of xylan; no glucan was removed. Ash increased because calcium was incorporated into biomass during the pretreatment. After oxidative lime pretreatment, about 21% of added lime could be recovered by CO2 carbonation.

  18. 用于微机电系统的叉形微铰链%Micro Fork Hinge for MEMS Devices

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Flexible beams are often used for rotation in MEMS (Micro Electro Mechanical Systems) devices to avoid the friction problems associated with hinge. However, the rotation angle of flexible beam is very limited and not enough for many applications. In this paper, we introduce a quasi hinge structure named as Fork Hinge, which has a larger equivalent rotation angle (e.g.10 times lager) and is more stable than the flexible hinge, while keeping its interesting properties. We develop an analytical model and simulate the Fork hinge behavior with FEM analysis. We find a good correlation with Fork Hinges fabricated using a SOI (Silicon on Insulator) wafer and DRIE (Deep Reactive Ion Etching).

  19. Biomass and Volume Yield in Mature Hybrid Poplar Plantations on Temperate Abandoned Farmland

    Directory of Open Access Journals (Sweden)

    Benoit Truax

    2014-12-01

    Full Text Available In this study, we developed clone-specific allometric relationships, with the objective of calculating volume and biomass production after 13 years in 8 poplar plantations, located across an environmental gradient, and composed of 5 unrelated hybrid poplar clones. Allometry was found to be very similar for clones MxB-915311, NxM-3729 and DNxM-915508, all having P. maximoviczii parentage. Clones DxN-3570 and TxD-3230 also had a similar allometry; for a given DBH they have a lower stem volume, stem biomass and branch biomass than P. maximoviczii hybrids. Strong Site × Clone interactions were observed for volume and woody biomass growth, with DxN and TxD hybrids only productive on low elevation fertile sites, whereas P. maximovizcii hybrids were also very productive on higher elevation sites with moderate to high soil fertility. At the site level (5 clones mean, yield reached 27.5 and 22.7 m3/ha/yr. on the two best sites (high fertility and low elevation, confirming the great potential of southern Québec (Canada for poplar culture. The productivity gap between the most and least productive sites has widened from year 8 to year 13, highlighting the need for high quality abandoned farmland site selection in terms of climate and soil fertility. Although clone selection could optimize yield across the studied environmental gradient, it cannot fully compensate for inadequate site selection.

  20. Functional Divergence of Poplar Histidine-Aspartate Kinase HK1 Paralogs in Response to Osmotic Stress

    Directory of Open Access Journals (Sweden)

    François Héricourt

    2016-12-01

    Full Text Available Previous works have shown the existence of protein partnerships belonging to a MultiStep Phosphorelay (MSP in Populus putatively involved in osmosensing. This study is focused on the identification of a histidine-aspartate kinase, HK1b, paralog of HK1a. The characterization of HK1b showed its ability to homo- and hetero-dimerize and to interact with a few Histidine-containing Phosphotransfer (HPt proteins, suggesting a preferential partnership in poplar MSP linked to drought perception. Furthermore, determinants for interaction specificity between HK1a/1b and HPts were studied by mutagenesis analysis, identifying amino acids involved in this specificity. The HK1b expression analysis in different poplar organs revealed its co-expression with three HPts, reinforcing the hypothesis of partnership participation in the MSP in planta. Moreover, HK1b was shown to act as an osmosensor with kinase activity in a functional complementation assay of an osmosensor deficient yeast strain. These results revealed that HK1b showed a different behaviour for canonical phosphorylation of histidine and aspartate residues. These phosphorylation modularities of canonical amino acids could explain the improved osmosensor performances observed in yeast. As conserved duplicates reflect the selective pressures imposed by the environmental requirements on the species, our results emphasize the importance of HK1 gene duplication in poplar adaptation to drought stress.

  1. Effects of Cutting Density on Growth,Yield and Quality of Poplar Clone Seedlings

    Institute of Scientific and Technical Information of China (English)

    Fang Shengzuo; Tian Ye; Yuan Fayin

    2006-01-01

    In order to identify the optimum cutting density for producing the highest number of plantable seedlings of poplar clones,a split-plot randomized block design was used to establish four cutting densities in plots.Based on data on the survival,leaf area,seedling height,caliper,and biomass of 1-year-old seedlings of clones Nanlin-95,Nanlin-895,Nanlin-1388 and NL-80351,the growth characteristics and seedling quality under four cutting densities were analyzed.Results indicated that the leaf area,stern and leaf biomass,and caliper of seedlings of all four poplar clones increased with the decrease in cutting density.Leaf area index reached its highest level at the spacing of 40 cm×40 cm,while the aboveground biomass of the seedling on an area basis increased as the cutting density increased.Seedling quality at low cutting density was higher than that at closer cutting density.The quantity of first-grade seedlings (grade Ⅰ) for clones Nanlin-95 and Nanlin-895 was achieved at the spacing of 40 cm×50 cm;for NL-1388 and NL-80351,it was 50 cm×50 cm.According to the seedling quality and the number of plantable seedlings produced,the suggested cutting density for these four poplar clones was 50,000 stems/hm2.

  2. An In-Depth Understanding of Biomass Recalcitrance Using Natural Poplar Variants as the Feedstock

    Energy Technology Data Exchange (ETDEWEB)

    Meng, Xianzhi [Department of Chemical & Biomolecular Engineering, University of Tennessee Knoxville, Knoxville TN 37996 USA; Pu, Yunqiao [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Yoo, Chang Geun [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Li, Mi [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Bali, Garima [Renewable Bioproducts Institute, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta GA 30332 USA; Park, Doh-Yeon [Renewable Bioproducts Institute, School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta GA 30332 USA; Gjersing, Erica [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; National Renewable Energy Laboratory, Golden CO 80401 USA; Davis, Mark F. [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; National Renewable Energy Laboratory, Golden CO 80401 USA; Muchero, Wellington [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Tuskan, Gerald A. [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Tschaplinski, Timothy J. [BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Ragauskas, Arthur J. [Department of Chemical & Biomolecular Engineering, University of Tennessee Knoxville, Knoxville TN 37996 USA; BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge TN 37831 USA; Center for Renewable Carbon, Department of Forestry, Wildlife, and Fisheries, University Tennessee Institute of Agriculture, Knoxville TN 37996 USA

    2016-12-12

    In an effort to better understand the biomass recalcitrance, six natural poplar variants were selected as feedstocks based on previous sugar release analysis. Compositional analysis and physicochemical characterizations of these poplars were performed and the correlations between these physicochemical properties and enzymatic hydrolysis yield were investigated. Gel permeation chromatography (GPC) and 13C solid state NMR were used to determine the degree of polymerization (DP) and crystallinity index (CrI) of cellulose, and the results along with the sugar release study indicated that cellulose DP likely played a more important role in enzymatic hydrolysis. Simons' stain revealed that the accessible surface area of substrate significantly varied among these variants from 17.3 to 33.2 mg g-1/biomass as reflected by dye adsorption, and cellulose accessibility was shown as one of the major factors governing substrates digestibility. HSQC and 31P NMR analysis detailed the structural features of poplar lignin variants. Overall, cellulose relevant factors appeared to have a stronger correlation with glucose release, if any, than lignin structural features. Lignin structural features, such as a phenolic hydroxyl group and the ratio of syringyl and guaiacyl (S/G), were found to have a more convincing impact on xylose release. Low lignin content, low cellulose DP, and high cellulose accessibility generally favor enzymatic hydrolysis; however, recalcitrance cannot be simply judged on any single substrate factor.

  3. ADVANCING PROTOCOLS FOR POPLARS in vitro PROPAGATION, REGENERATION AND SELECTION OF TRANSFORMANTS

    Directory of Open Access Journals (Sweden)

    Nataliia Kutsokon

    2013-02-01

    Full Text Available Poplars (genus Populus have emerged as a model organism for forest biotechnology, and genetic modification is more advanced for this genus than for any other tree. So far several protocols for microclonal propagation and regeneration for Populus species have been developed. However it is well known that these protocols differ for various species and need to be adapted even for different clones of the same species. This work was focused on developing of protocols for propagation, regeneration and putative transformant´s selection of aspen Populus tremula L. and other two fast-growing Populus species (P. nigra L., P. x canadensis Moench. The regeneration ability for black poplar explants was demonstrated to be three times higher compared to those for aspen and hybrid poplar. It was found that concentration 1 mg/L of phosphinothricin and 25 mg/L of kanamycin is toxic for non- transgenic plant tissues of P. x canadensis and can be applied in transformation experiments when genes of resistance to the corresponding selective agents into the plant genome are introduced.

  4. Leaf energy balance and transpirational relationships of tulip poplar (Liriodendron tulipifera)

    Energy Technology Data Exchange (ETDEWEB)

    McConathy, R.K.; McLaughlin, S.B.; Reichle, D.E.; Dinger, B.E.

    1976-10-01

    Relationships between several physiological parameters of in situ tulip poplar (Liriodendron tulipifera L.) foliage, and its surrounding forest environment were examined, with emphasis on the transpirational process. Objectives were to measure and compare stomatal relationships with environmental and plant morphological variables, determine and assess the relative importance of factors affecting transpiration and leaf energy balance of a mature tulip poplar, examine and describe the diurnal kinetics of transpiration and leaf energy balance under forest conditions, and examine and develop equations describing these processes and relationships. Tulip poplar leaves were examined at three crown heights. Stomatal distribution, density, and dimensions were measured, then these data were used to predict leaf diffusion layer resistance. Stomatal dimensions decreased with crowned height while stomatal density increased, but neither varied over individual leaf surfaces. Numbers of stomata per leaf were constant throughout the crown. Calculated transpiration rates were compared with stomatal diffusion resistance, leaf xylem water potential, and environmental parameters. Diurnal leaf heat loss, water stress, and stomatal resistance measurements followed the diurnal variation of the radiation absorbed by the leaf. Heat loss by radiation, evaporation, and convection varied with crown height in response to variations in stomatal diffusion resistance, transpiration, vapor pressure deficit, leaf temperature, and wind speed.

  5. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress

    Directory of Open Access Journals (Sweden)

    Anne eHennig

    2015-05-01

    Full Text Available Woody crops such as poplars (Populus can contribute to meet the increasing energy demand of a growing human population and can therefore enhance the security of energy supply. Using energy from biomass increases ecological sustainability as biomass is considered to play a pivotal role in abating climate change. Because areas for establishing poplar plantations are often confined to marginal sites drought tolerance is one important trait for poplar genotypes cultivated in short rotation coppice. We tested nine-month-old plants of four tetraploid Populus tremula (L. x P. tremuloides (Michx. lines that were generated by protoplast fusion and their diploid counterpart for water consumption and drought stress responses in a greenhouse experiment. The fusion lines showed equivalent or decreased height growth, stem biomass and total leaf area compared to the diploid line. The relative height increment of the fusion lines was not reduced compared to the diploid line when the plants were exposed to drought. The fusion lines were distinguished from the diploid counterpart by stomatal characteristics such as increased size and lower density. The changes in the stomatal apparatus did not affect the stomatal conductance. When exposed to drought the carbohydrate concentrations increased more strongly in the fusion lines than in the diploid line. Two fusion lines consumed significantly less water with regard to height growth, producing equivalent or increased relative stem biomass under drought compared to their diploid relative. Therefore, these tetraploid fusion lines are interesting candidates for short rotation biomass plantation on dry sites.

  6. Molecular evaluations of thirty one clones of poplar based on RAPD and SSR molecular markers

    Directory of Open Access Journals (Sweden)

    Singh M.K.

    2014-01-01

    Full Text Available Poplar is an important tree species valued all over the world for its wood importance. Despite limited knowledge of the levels of genetic diversity and relatedness, their cultivation as a source of plywood is widespread. In order to facilitate reasoned scientific decisions on its management and conservation and prepare for selective breeding programme, genetic analysis of 31 genotypes was performed using RAPD and SSR molecular markers. Twenty six RAPD primers and 14 SSR primers amplified a total of 236 and 85 scoreable bands of which 86.44% and 86.02% were polymorphic. The mean coefficient of gene differentiation (Gst was 0.388 and 0.341 indicating that 61.2% and 65.9% of the genetic variation resided within the populations. Analysis of molecular variance (AMOVA indicated that majority of genetic variation (94.6% using RAPD and 89% using SSR occurred among genotypes, while the variation between the three groups (categorized as tall, medium and small plants height was 5.4% (using RAPD and 11% (using SSR. The dendrogram obtained from NJ and STRUCTURE analysis revealed splitting of genotypes into four clusters with clear distinction between short, medium and tall height genotypes, indicated that genetic differentiations measure with respect to RAPD and SSR. However, both the markers were equally useful in providing some understanding about the genetic relationship of different genotypes of poplar that are important in the conservation and exploitation of poplar genetic resources.

  7. Investigation of horizontal gene transfer in poplar/Amanita muscaria ectomycorrhizas.

    Science.gov (United States)

    Zhang, Chi; Hampp, Rüdiger; Nehls, Uwe

    2005-01-01

    Fine roots of forest trees form together with certain soil fungi symbiotic structures (ectomycorrhizas), where fungal hyphae are in intimate contact with plant cells. Due to root cell degeneration, plant DNA is released and could be taken up by the fungus. The possibility that horizontal gene transfer might result in a risk for the environment should be evaluated before a massive release of genetically engineered trees into nature occurs, even though only a few convincing examples of horizontal gene transfer are known. Transgenic poplars containing a construct of the Streptomyces hygroscopicus bar gene under the control of the Cochliobolus heterostrophus GPD (glyceraldehyde-3-phosphate dehydrogenase) promoter were generated by Agrobacterium-mediated transformation. The functionality of this construct in the ectomycorrhizal model fungus Amanita muscaria was previously verified by protoplast-based fungal transformation. 35,000 ectomycorrhizas, formed between transgenic poplars and non-transgenic A. muscaria hyphae, were isolated and transferred to selective agar plates. Putative herbicide-resistant fungal colonies were obtained after the first round of selection. However, none of these colonies survived a transfer onto fresh selection medium, nor did they contain the bar gene, indicating that no horizontal gene transfer from poplar to A. muscaria occurred during symbiosis under axenic conditions. However, since ectomycorrhizas are associated under natural conditions with viruses, bacteria and other fungi, these additional associations should be evaluated in future.

  8. Dense poplar plantations as the raw material for the production of energy

    Directory of Open Access Journals (Sweden)

    Klašnja Bojana

    2006-01-01

    Full Text Available The higher heating value of wood and bark was determined for several poplar (Populus spp clones. The study included the juvenile one year old plants of the following clones: P.×euramericana cl. ostia, P. nigra cl.53/86, P. deltoides cl. PE 19/66, P.×euramericana cl. I-214, P. deltoides cl. S6-7 and P.×euramericana cv. robusta. By using FVI which takes into account ash content, wood bulk density, and moisture content, it was determined that poplar wood can be a significant energy raw material, primarily thanks to its short rotation cycle and a very high wood volume increment. Significant differences were determined in the values of wood basic density which affect the higher heating value of the study poplar clones, and consequently the yield (weight of biomass produced per unit area of dense plantations. This is reflected also on the estimated amount of energy that can be produced by the combustion of biomass of the whole one year old plants.

  9. Water consumption and biomass production of protoplast fusion lines of poplar hybrids under drought stress.

    Science.gov (United States)

    Hennig, Anne; Kleinschmit, Jörg R G; Schoneberg, Sebastian; Löffler, Sonja; Janßen, Alwin; Polle, Andrea

    2015-01-01

    Woody crops such as poplars (Populus) can contribute to meet the increasing energy demand of a growing human population and can therefore enhance the security of energy supply. Using energy from biomass increases ecological sustainability as biomass is considered to play a pivotal role in abating climate change. Because areas for establishing poplar plantations are often confined to marginal sites drought tolerance is one important trait for poplar genotypes cultivated in short rotation coppice. We tested 9-month-old plants of four tetraploid Populus tremula (L.) × P. tremuloides (Michx.) lines that were generated by protoplast fusion and their diploid counterpart for water consumption and drought stress responses in a greenhouse experiment. The fusion lines showed equivalent or decreased height growth, stem biomass and total leaf area compared to the diploid line. The relative height increment of the fusion lines was not reduced compared to the diploid line when the plants were exposed to drought. The fusion lines were distinguished from the diploid counterpart by stomatal characteristics such as increased size and lower density. The changes in the stomatal apparatus did not affect the stomatal conductance. When exposed to drought the carbohydrate concentrations increased more strongly in the fusion lines than in the diploid line. Two fusion lines consumed significantly less water with regard to height growth, producing equivalent or increased relative stem biomass under drought compared to their diploid relative. Therefore, these tetraploid fusion lines are interesting candidates for short rotation biomass plantation on dry sites.

  10. Yield and spatial supply of bioenergy poplar and willow short-rotation coppice in the UK.

    Science.gov (United States)

    Aylott, Matthew J; Casella, E; Tubby, I; Street, N R; Smith, P; Taylor, Gail

    2008-01-01

    Limited information on likely supply and spatial yield of bioenergy crops exists for the UK. Here, productivities are reported of poplar (Populus spp.) and willow (Salix spp.) grown as short-rotation coppice (SRC), using data from a large 49-site yield trial network. A partial least-squares regression technique was used to upscale actual field trial observations across England and Wales. Spatial productivity was then assessed under different land-use scenarios. Mean modelled yields ranged between 4.9 and 10.7 oven-dry tonnes (odt) ha(-1) yr(-1). Yields were generally higher in willow than in poplar, reflecting the susceptibility of older poplar genotypes to rust and their tendency for single stem dominance. Replacing 10% of arable land, 20% of improved grassland and 100% of set-aside grassland in England and Wales with the three most productive genotypes would yield 13 Modt of biomass annually (supplying 7% of UK electricity production or 48% of UK combined heat and power (CHP) production). Results show existing SRC genotypes have the immediate potential to be an important component of a mixed portfolio of renewables and that, in future, as new and improved genotypes become available, higher yields could extend this potential further.

  11. Short rotation coppice culture of willows and poplars as energy crops on metal contaminated agricultural soils.

    Science.gov (United States)

    Ruttens, Ann; Boulet, Jana; Weyens, Nele; Smeets, Karen; Adriaensen, Kristin; Meers, Erik; Van Slycken, Stijn; Tack, Filip; Meiresonne, Linda; Thewys, Theo; Witters, Nele; Carleer, Robert; Dupae, Joke; Vangronsveld, Jaco

    2011-01-01

    Phytoremediation, more precisely phytoextraction, has been placed forward as an environmental friendly remediation technique, that can gradually reduce increased soil metal concentrations, in particular the bioavailable fractions. The aim of this study was to investigate the possibilities of growing willows and poplars under short rotation coppice (SRC) on an acid, poor, sandy metal contaminated soil, to combine in this way soil remediation by phytoextraction on one hand, and production of biomass for energy purposes on the other. Above ground biomass productivities were low for poplars to moderate for willows, which was not surprising, taking into account the soil conditions that are not very favorable for growth of these trees. Calculated phytoextraction efficiency was much longer for poplars than these for willows. We calculated that for phytoextraction in this particular case it would take at least 36 years to reach the legal threshold values for cadmium, but in combination with production of feedstock for bioenergy processes, this type of land use can offer an alternative income for local farmers. Based on the data of the first growing cycle, for this particular case, SRC of willows should be recommended.

  12. Overexpression of poplar cellulase accelerates growth and disturbs the closing movements of leaves in sengon.

    Science.gov (United States)

    Hartati, Sri; Sudarmonowati, Enny; Park, Yong Woo; Kaku, Tomomi; Kaida, Rumi; Baba, Kei'ichi; Hayashi, Takahisa

    2008-06-01

    In this study, poplar (Populus alba) cellulase (PaPopCel1) was overexpressed in a tropical Leguminosae tree, sengon (Paraserianthes falcataria), by the Agrobacterium tumefaciens method. PaPopCel1 overexpression increased the length and width of stems with larger leaves, which showed a moderately higher density of green color than leaves of the wild type. The pairs of leaves on the transgenic plants closed more slowly during sunset than those on the wild-type plants. When main veins from each genotype were excised and placed on a paper towel, however, the leaves of the transgenic plants closed more rapidly than those of the wild-type plant. Based on carbohydrate analyses of cell walls, the leaves of the transgenic plants contained less wall-bound xyloglucan than those of the wild-type plants. In situ xyloglucan endotransglucosylase activity showed that the incorporation of whole xyloglucan, potentially for wall tightening, occurred in the parenchyma cells (motor cells) of the petiolule pulvinus attached to the main vein, although the transgenic plant incorporated less whole xyloglucan than the wild-type plant. These observations support the hypothesis that the paracrystalline sites of cellulose microfibrils are attacked by poplar cellulase, which loosens xyloglucan intercalation, resulting in an irreversible wall modification. This process could be the reason why the overexpression of poplar cellulase both promotes plant growth and disturbs the biological clock of the plant by altering the closing movements of the leaves of the plant.

  13. Investigating Mass Transport Limitations on Xylan Hydrolysis During Dilute Acid Pretreatment of Poplar

    Energy Technology Data Exchange (ETDEWEB)

    Mittal, Ashutosh; Pilath, Heid M.; Parent, Yves; Chatterjee, Siddharth G.; Donohoe, Bryon S.; Yarbrough, John M.; Himmel, Michael E.; Nimlos, Mark R.; Johnson, David K.

    2014-04-28

    Mass transport limitations could be an impediment to achieving high sugar yields during biomass pretreatment and thus be a critical factor in the economics of biofuels production. The objective of this work was to study the mass transfer restrictions imposed by the structure of biomass on the hydrolysis of xylan during dilute acid pretreatment of biomass. Mass transfer effects were studied by pretreating poplar wood at particle sizes ranging from 10 micrometers to 10 mm. This work showed a significant reduction in the rate of xylan hydrolysis in poplar when compared to the intrinsic rate of hydrolysis for isolated xylan that is possible in the absence of mass transfer. In poplar samples we observed no significant difference in the rates of xylan hydrolysis over more than two orders of magnitude in particle size. It appears that no additional mass transport restrictions are introduced by increasing particle size from 10 micrometers to 10 mm. This work suggests that the rates of xylan hydrolysis in biomass particles are limited primarily by the diffusion of hydrolysis products out of plant cell walls. A mathematical description is presented to describe the kinetics of xylan hydrolysis that includes transport of the hydrolysis products through biomass into the bulk solution. The modeling results show that the effective diffusion coefficient of the hydrolysis products in the cell wall is several orders of magnitude smaller than typical values in other applications signifying the role of plant cell walls in offering resistance to diffusion of the hydrolysis products.

  14. Comparative Proteomic Analyses of the Hybrid Yellow-Poplar Stigma upon Pollination

    Institute of Scientific and Technical Information of China (English)

    Ming Li; Kun Wang; Pingfang Yang

    2012-01-01

    As basal angiosperm,Liriodendron chinense (Hemsl.) Sarg.and Liriodendron tulipifera Linn.are two species belong to Liriodendron genus.Hybrid yellowpoplar was obtained through crossing between Liriodendron tulipifera Linn.x L.chinense(Hemsl.) Sarg.Although hybrid yellow-poplar was strong in both growth and adaptation,its fruiting rate was as low as its parents.In this study,we profiled the proteome in hybrid yellow-poplar stigma before and after pollination.Comparative analyses of two dimensional gel electrophoresis maps from un-pollinated and pollinated stigmas showed that 30 proteins were increased and 27 proteins decreased after pollination.Functional categorization showed that most of them were metabolism-related,stress response related and protein biosynthesis,degradation and destinationrelated proteins.Also there were some redox-related and cell signaling-related proteins.All these changed proteins might involve in or affect the pollen and stigma interaction in hybrid yellow-poplar.This study will be helpful in understanding the regulation of Liriodendron genus sexual reproduction.

  15. Ectomycorrhizal colonization and diversity in relation to tree biomass and nutrition in a plantation of transgenic poplars with modified lignin biosynthesis.

    Science.gov (United States)

    Danielsen, Lara; Lohaus, Gertrud; Sirrenberg, Anke; Karlovsky, Petr; Bastien, Catherine; Pilate, Gilles; Polle, Andrea

    2013-01-01

    Wood from biomass plantations with fast growing tree species such as poplars can be used as an alternative feedstock for production of biofuels. To facilitate utilization of lignocellulose for saccharification, transgenic poplars with modified or reduced lignin contents may be useful. However, the potential impact of poplars modified in the lignification pathway on ectomycorrhizal (EM) fungi, which play important roles for plant nutrition, is not known. The goal of this study was to investigate EM colonization and community composition in relation to biomass and nutrient status in wildtype (WT, Populus tremula × Populus alba) and transgenic poplar lines with suppressed activities of cinnamyl alcohol dehydrogenase, caffeate/5-hydroxyferulate O-methyltransferase, and cinnamoyl-CoA reductase in a biomass plantation. In different one-year-old poplar lines EM colonization varied from 58% to 86%, but the EM community composition of WT and transgenic poplars were indistinguishable. After two years, the colonization rate of all lines was increased to about 100%, but separation of EM communities between distinct transgenic poplar genotypes was observed. The differentiation of the EM assemblages was similar to that found between different genotypes of commercial clones of Populus × euramericana. The transgenic poplars exhibited significant growth and nutrient element differences in wood, with generally higher nutrient accumulation in stems of genotypes with lower than in those with higher biomass. A general linear mixed model simulated biomass of one-year-old poplar stems with high accuracy (adjusted R(2) = 97%) by two factors: EM colonization and inverse wood N concentration. These results imply a link between N allocation and EM colonization, which may be crucial for wood production in the establishment phase of poplar biomass plantations. Our data further support that multiple poplar genotypes regardless whether generated by transgenic approaches or conventional

  16. Status of the fork-tailed storm-petrel at East Amatuli Island during the summer of 1989

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report summarizes the results of a seabird fledgling success study that took place from August 26th to September 8th, 1989. Nest burrows were examined,...

  17. Model Watershed Plan; Lemhi, Pahsimeroi, and East Fork of the Salmon River Management Plan, 1995 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Swift, Ralph

    1995-11-01

    Idaho`s Model Watershed Project was established as part of the Northwest Power Planning Council`s plan for salmon recovery in the Columbia River Basin. The Council`s charge was simply stated and came without strings. The tasks were to identify actions within the watershed that are planned or needed for salmon habitat, and establish a procedure for implementing habitat-improvement measures. The Council gave the responsibility of developing this project to the Idaho Soil Conservation Commission. This Model Watershed Plan is intended to be a dynamic plan that helps address these two tasks. It is not intended to be the final say on either. It is also not meant to establish laws, policies, or regulations for the agencies, groups, or individuals who participated in the plan development.

  18. 77 FR 64125 - Notice of Proposed Withdrawal Extension and Notification of a Public Meeting for the East Fork...

    Science.gov (United States)

    2012-10-18

    ... meeting in connection with the proposed withdrawal extension on December 3, 2012, at the Dubois Town Hall, 712 Meckem, Dubois, Wyoming from 4:30 p.m. until 7:30 p.m. We will publish a notice of the time and...

  19. Isoprene in poplar emissions: effects on new particle formation and OH concentrations

    Directory of Open Access Journals (Sweden)

    A. Kiendler-Scharr

    2012-01-01

    Full Text Available Stress-induced volatile organic compound (VOC emissions from transgenic Grey poplar modified in isoprene emission potential were used for the investigation of photochemical secondary organic aerosol (SOA formation. In poplar, acute ozone stress induces the emission of a wide array of VOCs dominated by sesquiterpenes and aromatic VOCs. Constitutive light-dependent emission of isoprene ranged between 66 nmol m−2 s−1 in non-transgenic controls (wild type WT and nearly zero (<0.5 nmol m−2 s−1 in isoprene emission-repressed plants (line RA22, respectively. Nucleation rates of up to 3600 cm−3 s−1 were observed in our experiments. In the presence of isoprene new particle formation was suppressed compared to non-isoprene containing VOC mixtures. Compared to isoprene/monoterpene systems emitted from other plants the suppression of nucleation by isoprene was less effective for the VOC mixture emitted from stressed poplar. This is explained by the observed high efficiency of new particle formation for emissions from stressed poplar. Direct measurements of OH in the reaction chamber revealed that the steady state concentration of OH is lower in the presence of isoprene than in the absence of isoprene, supporting the hypothesis that isoprenes' suppressing effect on nucleation is related to radical chemistry. In order to test whether isoprene contributes to SOA mass formation, fully deuterated isoprene (C5D8 was added to the stress-induced emission profile of an isoprene free poplar mutant. Mass spectral analysis showed that, despite the isoprene-induced suppression of particle formation, fractions of deuterated isoprene were incorporated into the SOA. A fractional mass yield of 2.3% of isoprene was observed. Future emission changes due to land use and climate change may therefore affect both gas phase oxidation capacity and new particle number formation.

  20. Isoprene in poplar emissions: effects on new particle formation and OH concentrations

    Directory of Open Access Journals (Sweden)

    A. Kiendler-Scharr

    2011-08-01

    Full Text Available Stress-induced volatile organic compound (VOC emissions from transgenic Grey poplar, modified in isoprene emission potential were used for the investigation of photochemical secondary organic aerosol (SOA formation. Nucleation rates of up to 3600 cm−3 s−1 were observed in our experiments. In poplar, acute ozone stress induces the emission of a wide array of VOCs dominated by sesquiterpenes and aromatic VOCs. Constitutive light-dependent emission of isoprene ranged between 66 nmol m−2 s−1 in non-transgenic controls (wild type WT and nearly zero (<0.5 nmol m−2 s−1 in isoprene emission-repressed lines (line RA22, respectively. In the presence of isoprene new particle formation was suppressed compared to non-isoprene containing VOC mixtures. Compared to isoprene/monoterpene systems emitted from other plants the suppression of nucleation by isoprene was less effective for the VOC mixture emitted from stressed poplar. This is explained by the observed high efficiency of new particle formation for emissions from stressed poplar. Direct measurements of OH in the reaction chamber revealed that the steady state concentration of OH is lower in the presence of isoprene than in the absence of isoprene, supporting the hypothesis that isoprenes' suppressing effect on nucleation is related to radical chemistry. In order to test whether isoprene contributes to SOA mass formation, fully deuterated isoprene (C5D8 was added to the stress-induced emission profile of an isoprene free poplar mutant. Mass spectral analysis showed that, despite the isoprene-induced suppression of particle formation, fractions of deuterated isoprene were incorporated into the SOA. A fractional mass yield of 2.3 % of isoprene was observed. Future emission changes due to land use and climate change may therefore affect both gas phase oxidation capacity and new particle number formation.

  1. Genetic Modification of Short Rotation Poplar Biomass Feedstock for Efficient Conversion to Ethanol

    Energy Technology Data Exchange (ETDEWEB)

    Dinus, R.J.

    2000-08-30

    The Bioenergy Feedstock Development Program, Environmental Sciences Division, Oak Ridge National Laboratory is developing poplars (Populus species and hybrids) as sources of renewable energy, i.e., ethanol. Notable increases in adaptability, volume productivity, and pest/stress resistance have been achieved via classical selection and breeding and intensified cultural practices. Significant advances have also been made in the efficiencies of harvesting and handling systems. Given these and anticipated accomplishments, program leaders are considering shifting some attention to genetically modifying feedstock physical and chemical properties, so as to improve the efficiency with which feedstocks can be converted to ethanol. This report provides an in-depth review and synthesis of opportunities for and feasibilities of genetically modifying feedstock qualities via classical selection and breeding, marker-aided selection and breeding, and genetic transformation. Information was collected by analysis of the literature, with emphasis on that published since 1995, and interviews with prominent scientists, breeders, and growers. Poplar research is well advanced, and literature is abundant. The report therefore primarily reflects advances in poplars, but data from other species, particularly other shortrotation hardwoods, are incorporated to fill gaps. An executive summary and recommendations for research, development, and technology transfer are provided immediately after the table of contents. The first major section of the report describes processes most likely to be used for conversion of poplar biomass to ethanol, the various physical and chemical properties of poplar feedstocks, and how such properties are expected to affect process efficiency. The need is stressed for improved understanding of the impact of change on both overall process and individual process step efficiencies. The second part documents advances in trait measurement instrumentation and methodology

  2. GHGs balance in a land use change process from grassland to short rotation coppice of poplar

    Science.gov (United States)

    Sabbatini, Simone; Arriga, Nicola; Baiocco, Andrea; Boschi, Alessio; Castaldi, Simona; Consalvo, Claudia; Gioli, Beniamino; Matteucci, Giorgio; Tomassucci, Michele; Zaldei, Alessandro; Papale, Dario

    2013-04-01

    At present one of the fastest spreading renewable energy sources are bioenergy cultivations. Millions of hectares of traditional crops all over the Europe are expected to be converted in energy crops in the near future, in order to produce green energy and contrast global warming. Last year, in the context of the GHG-Europe FP7 project we set up an experiment to verify the effects on the green-house gases balance of a land use change from traditional agriculture to short rotation coppice of poplar clones in central Italy. CO2 fluxes measured during the last growing season through three Eddy Covariance masts - two on poplar plantations of different ages and one over a reference site (grassland) - have been analysed. We also monitored CO2, CH4 and N2O fluxes from soil measured using chambers in order to better understand the contribution of other GHGs. The two poplar plantations showed a similar uptake of Carbon, 368 g C m-2 year-1 and 358 g C m-2 year-1, while the grassland absorbed 220 g C m-2 year-1 during the same period. Soil respiration in average was higher for the youngest plantation of poplar and for the grassland, lower for the oldest one, where soil is undisturbed from more time. In all the sites we measured low emissions during the winter (between 80 and 150 mg CO2 m-2 h-1), progressively higher in the spring and early summer with growing temperatures (up to 650 mg CO2 m-2 h-1), quite low during the summer because of a strong drought, while the highest values were recorded in September (ca. 1100 mg CO2 m-2 h-1 in the grassland and youngest poplar) after important rain events. Fluxes of N2O and CH4 from soil are very low: little absorption of CH4 in the grassland (values between 0 and -18.75 μg m-2 h-1), with peak after fertilization; in the SRC little absorption or emission with no clear seasonal pattern. Insignificant fluxes of N2O in all crops (even in the grassland after fertilization). The carbon fluxes measured are strongly related to the particular

  3. Conversion from cropland to short rotation coppice willow and poplar: Accumulation of soil organic carbon

    Science.gov (United States)

    Georgiadis, Petros; Stupak, Inge; Vesterdal, Lars; Raulund-Rasmussen, Karsten

    2015-04-01

    Increased demand for bioenergy has intensified the production of Short Rotation Coppice (SRC) willow and poplar in temperate zones. We used a combined chronosequence and paired plot approach to study the potential of SRC willow and poplar stands to increase the soil carbon stock compared to stocks of the previous arable land-use. The study focused on well-drained soils. We sampled soil from 30 SRC stands in Denmark and southern Sweden including soils from their adjacent arable fields. The 18 willow and 12 poplar stands formed a chronosequence ranging between 4 and 29 years after conversion. The soil was sampled both with soil cores taken by fixed depths of 0-5, 5-10, 10-15, 15-25, and 25-40 cm and by genetic horizons from soil pits to 1m depth. The aim of the study was to estimate the difference and the ratio between soil carbon contents of the SRC and annual crop land and analyze the results as a chronosequence to examine the effect of age after conversion on the difference. Covariates such as soil type, fertilization type and harvest frequency were also taken into account. Preliminary results suggest an overall increase in carbon stocks over time with average accumulation rates ranging from 0.25 to 0.4 Mg ha-1 yr-1 in willow and poplar stands. Poplar stands had higher rates of C gain, probably due to less frequent harvesting. The differences in carbon between the SRC and the paired cropland were initially negative but changed to positive over time, implying loss of carbon after conversion and a later gain in soil carbon with stand age. Pairwise differences ranged from -25 Mg C ha-1 to 37 Mg C ha-1 for the top 40 cm. The carbon stock ratio of the SRC stand to the arable land was estimated to minimize the effect of site-related factors. The results of this analysis suggested that the ratio increased significantly with age after conversion for the top 10 cm of the soil, both for poplar and willow. A slight increase with age was also noticed at the deeper depths, but

  4. Investigation on the Effect of Kenaf Core and Stalk Fiber on the Medium Density Fiber Board Properties Made of Poplar Fibers

    Directory of Open Access Journals (Sweden)

    Fahimeh SH.Alizadeh

    2012-01-01

    Full Text Available In order to optimize the use of material non-forest resources, in this study the possibility of using the kenaf stalk fibers mixed with poplar fibers in producing medium density fiber board was considered. Variable factors such as density at two levels (0.55, 0.75 g/cm3 and the percentage incorporation of fiber (%50 poplar fibers, - %50 kenaf core fiber, %50 poplar fiber, -% 50 kenaf stalk fiber and %100 poplar fibers were considered. Steaming time and temperature (175°C, 10min, press time and temperature (5 min, 175°C, Pressing pressure (30 kg/cm3, fiber cake moisture (%12 and urea-formaldehyde resin with Concentration of %50 of the study factors were fixed. Results show that adding kenaf core fibers to the poplar fibers increases modulus of elasticity and water absorption but thickness swelling reduces. Increased density in board made with kenaf core has caused increase in bending strength, modulus of elasticity and internal bond strength and their water absorption and thickness swelling after 2 and 24 hours were competitive with poplar (MDF. On the other hand Populus fiber– kenaf stalk board mechanical and physical properties were competitive with (MDF board made of %100 poplar fibers. Finally we can say that according to the statistical analysis, the best treatment in this study was using kenaf core fibers, in making poplar (MDF with 0.75 g/cm3 density.

  5. Coppicing shifts CO2 stimulation of poplar productivity to above-ground pools: a synthesis of leaf to stand level results from the POP/EUROFACE experiment

    NARCIS (Netherlands)

    Liberloo, M.; Lukac, M.; Calfapietra, C.; Hoosbeek, M.R.; Gielen, B.; Miglietta, F.; Mugnozza, G.S.; Ceulemans, R.

    2009-01-01

    A poplar short rotation coppice (SRC) grown for the production of bioenergy can combine carbon (C) storage with fossil fuel substitution. Here, we summarize the responses of a poplar (Populus) plantation to 6 yr of free air CO2 enrichment (POP/EUROFACE consisting of two rotation cycles). We show tha

  6. Status of fork-tailed and Leach's storm-petrel populations at St. Lazaria Island during the summer of 1985

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The purposes of this study were to (1) continue monitoring on Leach's forktail (Oceanadroma furcata) and on fork-tailed storm petrels (Oceanodroma leucorhoa); (2)...

  7. Using Caffeine as a Water Quality Indicator in the Ambient Monitoring Program for Third Fork Creek Watershed, Durham, North Carolina.

    Science.gov (United States)

    Spence, Porché L

    2015-01-01

    Caffeine has been suggested as a chemical indicator for domestic wastewater in freshwater systems, although it is not included in water quality monitoring programs. The Third Fork Creek watershed in Durham, NC, is highly urbanized, with a history of receiving untreated wastewater from leaking and overflowing sanitary sewers. The poor water quality originating in the Third Fork Creek watershed threatens its intended uses and jeopardizes drinking water, aquatic life, and recreational activities provided by Jordan Lake. Organic waste contaminants have been detected in both Third Fork Creek watershed and Jordan Lake; however, the sampling periods were temporary, resulting in a few samples collected during nonstorm periods. It is recommended that (1) the concentration of caffeine and other organic waste contaminants are determined during storm and nonstorm periods and (2) caffeine is monitored regularly with traditional water quality indicators to evaluate the health of Third Fork Creek watershed.

  8. Calibration of piezoelectric positioning actuators using a reference voltage-to-displacement transducer based on quartz tuning forks

    CERN Document Server

    Castellanos-Gomez, Andres; Agraït, Nicolás; Rubio-Bollinger, Gabino; 10.1017/S1431927611012839

    2012-01-01

    We use a piezoelectric quartz tuning fork to calibrate the displacement of ceramic piezoelectric scanners which are widely employed in scanning probe microscopy. We measure the static piezoelectric response of a quartz tuning fork and find it to be highly linear, non-hysteretic and with negligible creep. These performance characteristics, close to those of an ideal transducer, make quartz transducers superior to ceramic piezoelectric actuators. Furthermore, quartz actuators in the form of a tuning fork have the advantage of yielding static displacements comparable to those of local probe microscope scanners. We use the static displacement of a quartz tuning fork as a reference to calibrate the three axis displacement of a ceramic piezoelectric scanner. Although this calibration technique is a non-traceable method, it can be more versatile than using calibration grids because it enables to characterize the linear and non-linear response of a piezoelectric scanner in a broad range of displacements, spanning fro...

  9. Physical Habitat Characteristics on the North and South Forks of the Shenandoah River, VA in 2002-2007

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The layers within this geodataset describe physical habitat characteristics in the North and South Fork Shenandoah rivers. They represent conditions during summer...

  10. [Time lag effect between poplar' s sap flow velocity and microclimate factors in agroforestry system in West Liaoning Province].

    Science.gov (United States)

    Di, Sun; Guan, De-xin; Yuan, Feng-hui; Wang, An-zhi; Wu, Jia-bing

    2010-11-01

    By using Granier's thermal dissipation probe, the sap flow velocity of the poplars in agroforestry system in west Liaoning was continuously measured, and the microclimate factors were measured synchronously. Dislocation contrast method was applied to analyze the sap flow velocity and corresponding air temperature, air humidity, net radiation, and vapor pressure deficit to discuss the time lag effect between poplar' s sap flow velocity and microclimate factors on sunny days. It was found that the poplar's sap flow velocity advanced of air temperature, air humidity, and vapor pressure deficit, and lagged behind net radiation. The sap flow velocity in June, July, August, and September was advanced of 70, 30, 50, and 90 min to air temperature, of 80, 30, 40, and 90 min to air humidity, and of 90, 50, 70, and 120 min to vapor pressure deficit, but lagged behind 10, 10, 40, and 40 min to net radiation, respectively. The time lag time of net radiation was shorter than that of air temperature, air humidity, and vapor pressure. The regression analysis showed that in the cases the time lag effect was contained and not, the determination coefficients between comprehensive microclimate factor and poplar's sap flow velocity were 0.903 and 0.855, respectively, indicating that when the time lag effect was contained, the determination coefficient was ascended by 2.04%, and thus, the simulation accuracy of poplar's sap flow velocity was improved.

  11. Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.

    Science.gov (United States)

    Taghavi, Safiyh; Garafola, Craig; Monchy, Sébastien; Newman, Lee; Hoffman, Adam; Weyens, Nele; Barac, Tanja; Vangronsveld, Jaco; van der Lelie, Daniel

    2009-02-01

    The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.

  12. Identification of CpTI Gene Integration for 2-year-old Transgenic Poplars at DNA Level

    Institute of Scientific and Technical Information of China (English)

    Zhang Qian; Lin Shanzhi; Lin Yuanzhen; Zhang Zhiyi; Liu Haijun; Zou Yening; Wang Zeliang

    2004-01-01

    The putative transgenic hybrid triploid poplars [(P. Tomentosa × P. Bolleana) × P. Tomentosa] with CpTI gene have been outplanted in test field for 2 years. Although the authors' previous studies have proved that they are highly resistant to 3 species of poplar-threatening insect pests and contain high content of CpTI protein in foliage, incorporation status of foreign CpTI gene in poplar genome is uncertain. In this present study, the incorporation of foreign CpTI gene in genome of 5 transgenic poplars was confirmed by PCR and Southern blotting analysis. DNA amplification showed that there were clear DNA bands of about 450bp specific to CpTI gene in transgenic lanes, while no corresponding band in non-transgenic lane was observed. Correspondingly, clear DNA hybridization signals and no signal were exhibited on film for DNA Southern blotting analysis in transgenic lanes and non-transgenic lane, respectively, which further confirmed the stable integration of foreign CpTI gene in genome of 2-year-old transgenic poplar.

  13. Recognition and rating of effecting indexes on consumption of different sites poplar wood production in Iran for paper making industries

    Directory of Open Access Journals (Sweden)

    ebrahim lashkarbolouki

    2016-12-01

    Full Text Available Considering the growth in population, the need for wood consumption also increases. The rapid progress of science and technology doubles the wood consumption. Supplying this need at a glance was focused on the forests. Forests for many reasons have faced decrease in production and this extreme need for wood, by planting fast growing trees (poplar, eucalypt, Paulownia … makes it possible. One of industries plenty of the wood is paper industry that needs to huge primary wood material. This industry can continue their production activities by using the wood of poplar. This research was found out with the aim of assessing the practical characteristics of poplar wood by nondestructive test method in paper production industry. Poplar sites were selected in areas of country that poplar trees were planted widely. For locating the production of different site in paper industry found out Analytic Hierarchy Process (AHP in Expert choice 11 software. For field studies of this research, the questionnaires were prepared and sent for expert and university professors with special expertise in this industry. The results showed that: Production of Pulp and paper industry: in this industry among of five main indexes influencing in pulp and paper production, fiber morphology trait recognized as first priority with weighting value (0.435. Production allocations with their weighting value are determined: Sari (0.240, Fouman (0.236, Lashtnasha (0.182, Abhar (0.174 and Zanjan (0.168, respectively.

  14. Using Caffeine as a Water Quality Indicator in the Ambient Monitoring Program for Third Fork Creek Watershed, Durham, North Carolina

    OpenAIRE

    2015-01-01

    Caffeine has been suggested as a chemical indicator for domestic wastewater in freshwater systems, although it is not included in water quality monitoring programs. The Third Fork Creek watershed in Durham, NC, is highly urbanized, with a history of receiving untreated wastewater from leaking and overflowing sanitary sewers. The poor water quality originating in the Third Fork Creek watershed threatens its intended uses and jeopardizes drinking water, aquatic life, and recreational activities...

  15. The RecQ DNA helicase Rqh1 constrains Exonuclease 1-dependent recombination at stalled replication forks.

    Science.gov (United States)

    Osman, Fekret; Ahn, Jong Sook; Lorenz, Alexander; Whitby, Matthew C

    2016-03-09

    DNA double-strand break (DSB) repair by homologous recombination (HR) involves resection of the break to expose a 3' single-stranded DNA tail. In budding yeast, resection occurs in two steps: initial short-range resection, performed by Mre11-Rad50-Xrs2 and Sae2; and long-range resection catalysed by either Exo1 or Sgs1-Dna2. Here we use genetic assays to investigate the importance of Exo1 and the Sgs1 homologue Rqh1 for DNA repair and promotion of direct repeat recombination in the fission yeast Schizosaccharomyces pombe. We find that Exo1 and Rqh1 function in alternative redundant pathways for promoting survival following replication fork breakage. Exo1 promotes replication fork barrier-induced direct repeat recombination but intriguingly limits recombination induced by fork breakage. Direct repeat recombination induced by ultraviolet light depends on either Exo1 or Rqh1. Finally, we show that Rqh1 plays a major role in limiting Exo1-dependent direct repeat recombination induced by replication fork stalling but only a minor role in constraining recombination induced by fork breakage. The implications of our findings are discussed in the context of the benefits that long-range resection may bring to processing perturbed replication forks.

  16. Applications of the quartz tuning fork in classical and superfluid hydrodynamics

    Directory of Open Access Journals (Sweden)

    La Mantia Marco

    2012-04-01

    Full Text Available We present a short review of the multitude of applications of the commercially produced quartz tuning fork in cryogenic fluid dynamics, using cold gaseous, normal liquid and superfluid 4He as working fluids with extraordinary, but well-known and tunable physical properties. While the central focus of this work is the use of the tuning fork as a detector of classical and quantum turbulence, we also report other studies and applications, mainly on cavitation, pressure-, thermo- and viscosimetry. Finally, we mention briefly our recent studies of the acoustic emission due to these high-Q oscillators and its effect on the characteristics of their resonance.

  17. Carbon fibre tips for scanning probe microscopy based on quartz tuning fork force sensors

    Energy Technology Data Exchange (ETDEWEB)

    Castellanos-Gomez, A; Agrait, N; Rubio-Bollinger, G, E-mail: gabino.rubio@uam.es [Departamento de Fisica de la Materia Condensada (C-III), Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid (Spain)

    2010-04-09

    We report the fabrication and the characterization of carbon fibre tips for use in combined scanning tunnelling and force microscopy based on piezoelectric quartz tuning fork force sensors. We find that the use of carbon fibre tips results in a minimum impact on the dynamics of quartz tuning fork force sensors, yielding a high quality factor and, consequently, a high force gradient sensitivity. This high force sensitivity, in combination with high electrical conductivity and oxidation resistance of carbon fibre tips, make them very convenient for combined and simultaneous scanning tunnelling microscopy and atomic force microscopy measurements. Interestingly, these tips are quite robust against occasionally occurring tip crashes. An electrochemical fabrication procedure to etch the tips is presented that produces a sub-100-nm apex radius in a reproducible way which can yield high resolution images.

  18. Turbo Charge CPU Utilization in Fork/Join Using the ManagedBlocker

    CERN Document Server

    CERN. Geneva

    2017-01-01

    Fork/Join is a framework for parallelizing calculations using recursive decomposition, also called divide and conquer. These algorithms occasionally end up duplicating work, especially at the beginning of the run. We can reduce wasted CPU cycles by implementing a reserved caching scheme. Before a task starts its calculation, it tries to reserve an entry in the shared map. If it is successful, it immediately begins. If not, it blocks until the other thread has finished its calculation. Unfortunately this might result in a significant number of blocked threads, decreasing CPU utilization. In this talk we will demonstrate this issue and offer a solution in the form of the ManagedBlocker. Combined with the Fork/Join, it can keep parallelism at the desired level.

  19. Acute MUS81 depletion leads to replication fork slowing and a constitutive DNA damage response

    DEFF Research Database (Denmark)

    Xing, Meichun; Wang, Xiaohui; Palmai-Pallag, Timea;

    2015-01-01

    The MUS81 protein belongs to a conserved family of DNA structure-specific nucleases that play important roles in DNA replication and repair. Inactivation of the Mus81 gene in mice has no major deleterious consequences for embryonic development, although cancer susceptibility has been reported. We...... have investigated the role of MUS81 in human cells by acutely depleting the protein using shRNAs. We found that MUS81 depletion from human fibroblasts leads to accumulation of ssDNA and a constitutive DNA damage response that ultimately activates cellular senescence. Moreover, we show that MUS81...... is required for efficient replication fork progression during an unperturbed S-phase, and for recovery of productive replication following replication stalling. These results demonstrate essential roles for the MUS81 nuclease in maintenance of replication fork integrity....

  20. Z-Axis Micromachined Tuning Fork Gyroscope with Low Air Damping

    Directory of Open Access Journals (Sweden)

    Minh Ngoc Nguyen

    2017-02-01

    Full Text Available This paper reports on the design and fabrication of a z-axis tuning fork gyroscope which has a freestanding architecture. In order to improve the performance of the tuning fork gyroscope by eliminating the influence of the squeeze-film air damping, the driving and sensing parts of the gyroscope were designed to oscillate in-plane. Furthermore, by removing the substrate underneath the device, the slide-film air damping in the gap between the proof masses and the substrate was eliminated. The proposed architecture was analyzed by the finite element method using ANSYS software. The simulated frequencies of the driving and sensing modes were 9.788 and 9.761 kHz, respectively. The gyroscope was fabricated using bulk micromachining technology. The quality factor and sensitivity of the gyroscope operating in atmospheric conditions were measured to be 111.2 and 11.56 mV/°/s, respectively.

  1. QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L. Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.

    Directory of Open Access Journals (Sweden)

    Giorgia Carletti

    Full Text Available The genus Populus represents one of the most economically important groups of forest trees. It is composed by approximately 30 species used for wood and non-wood products, phytoremediation and biomass. Poplar is subjected to several biological and environmental threats although, compared to annual crops, we know far less about the genetic bases of biotic stress resistance. Woolly poplar aphid (Phloeomyzus passerinii is considered a main pest of cultivated poplars in European and American countries. In this work we present two high density linkage maps in poplar obtained by a genotyping by sequencing (GBS approach and the identification of QTLs involved in Ph. passerinii resistance. A total of 5,667 polymorphic markers (5,606 SNPs and 61 SSRs identified on expressed sequences have been used to genotype 131 plants of an F1 population P ×canadensis obtained by an interspecific mate between Populus deltoides (resistant to woolly poplar aphid and Populus nigra (susceptible to woolly poplar aphid. The two linkage maps, obtained following the two-way pseudo-testcross mapping strategy, have been used to investigate the genetic bases of woolly poplar aphid resistance. One major QTL and two QTLs with minor effects (mapped on LGV, LGXVI and LG XIX explaining the 65.8% of the genetic variance observed in the progeny in response to Ph. passerinii attack were found. The high density coverage of functional markers allowed the identification of three genes belonging to disease resistance pathway as putative candidates for P. deltoides resistance to woolly poplar aphid. This work is the first report on genetic of woolly poplar aphid genetic resistance and the resistant loci associated markers identified represent a valuable tool in resistance poplar breeding programs.

  2. The Middle East.

    Science.gov (United States)

    Blouin, Virginia; And Others

    This sixth grade resource unit focuses on Middle East culture as seen through five areas of the social sciences: anthropology-sociology, geography, history, economics, and political science. Among objectives that the student is expected to achieve are the following: 1) given general information on the Middle East through the use of film, visuals,…

  3. Middle East Respiratory Syndrome

    Centers for Disease Control (CDC) Podcasts

    2014-07-07

    This podcast discusses Middle East Respiratory Syndrome, or MERS, a viral respiratory illness caused by Middle East Respiratory Syndrome Coronavirus—MERS-CoV.  Created: 7/7/2014 by National Center for Immunization and Respiratory Diseases (NCIRD).   Date Released: 7/7/2014.

  4. Recovery in the East

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    As robust as the economic recovery in East Asia has been in recent months,attention must now be turned to managing emerging risks challenging macroeconomic stability,said World Bank’s latest East Asia and Pacific Economic Update released on October 19.Edited excerpts follow

  5. Gaussian Random Fields Methods for Fork-Join Network with Synchronization Constraints

    Science.gov (United States)

    2014-12-22

    research papers, under review in Mathematics of Operations Research (minor revision) and Annals of Applied Probability. One paper was on the finalist...2.00 1.00 Hongyuan Lu, Guodong Pang. Heavy Traffic Limits for A Fork-Join Network In the Halfin-Whitt Regime, Annals of Applied Probability (11 2014...fellowships for further studies in science , mathematics, engineering or technology fields: Student Metrics This section only applies to graduating

  6. Nested Fork-Join Queuing Networks and Their Application to Mobility Airfield Operations Analysis.

    Science.gov (United States)

    1997-03-01

    Method. The accuracy of this approximation is similar to that of its single-class counterpart. A similar approach is used by Di Mascolo, Frein , Baynat and...et en Automatique , 1985. [9] Baccelli, F. and Z. Liu. "On the execution of parallel programs on multipro- cessor systems-a queuing theory approach...Le Chesnay, France: Institut National de Recherche en Informatique et en Automatique , 1986. [16] Baccelli, F., and others. "Acyclic fork-join

  7. New species of Triplocania Roesler with forewing M3 forked (Psocodea: 'Psocoptera': Ptiloneuridae), from Brazil.

    Science.gov (United States)

    Da Silva Neto, Alberto Moreira; Rafael, José Albertino; Aldrete, Alfonso N García

    2014-07-16

    Four new Brazilian species of Triplocania with forewing M3 forked are described and illustrated based on male specimens, namely: Triplocania lamasi n.sp. (Mato Grosso: Brazil), Triplocania mariateresae n.sp. (Rio de Janeiro: Brazil), Triplocania newi n.sp. (Tocantins: Brazil) and Triplocania plaumanni n.sp. (Santa Catarina: Brasil). They differ from all the other species in the genus, in which the males are known, by the hypandrium and phallosome structures.

  8. Chromatin dynamics at the replication fork: there's more to life than histones.

    Science.gov (United States)

    Whitehouse, Iestyn; Smith, Duncan J

    2013-04-01

    Before each division, eukaryotic cells face the daunting task of completely and accurately replicating a heterogeneous, chromatinized genome and repackaging both resulting daughters. Because replication requires strand separation, interactions between the DNA and its many associated proteins--including histones--must be transiently broken to allow the passage of the replication fork. Here, we will discuss the disruption and re-establishment of chromatin structure during replication, and the consequences of these processes for epigenetic inheritance. Published by Elsevier Ltd.

  9. Slow Replication Fork Velocity of Homologous Recombination-Defective Cells Results from Endogenous Oxidative Stress.

    Science.gov (United States)

    Wilhelm, Therese; Ragu, Sandrine; Magdalou, Indiana; Machon, Christelle; Dardillac, Elodie; Técher, Hervé; Guitton, Jérôme; Debatisse, Michelle; Lopez, Bernard S

    2016-05-01

    Replications forks are routinely hindered by different endogenous stresses. Because homologous recombination plays a pivotal role in the reactivation of arrested replication forks, defects in homologous recombination reveal the initial endogenous stress(es). Homologous recombination-defective cells consistently exhibit a spontaneously reduced replication speed, leading to mitotic extra centrosomes. Here, we identify oxidative stress as a major endogenous source of replication speed deceleration in homologous recombination-defective cells. The treatment of homologous recombination-defective cells with the antioxidant N-acetyl-cysteine or the maintenance of the cells at low O2 levels (3%) rescues both the replication fork speed, as monitored by single-molecule analysis (molecular combing), and the associated mitotic extra centrosome frequency. Reciprocally, the exposure of wild-type cells to H2O2 reduces the replication fork speed and generates mitotic extra centrosomes. Supplying deoxynucleotide precursors to H2O2-exposed cells rescued the replication speed. Remarkably, treatment with N-acetyl-cysteine strongly expanded the nucleotide pool, accounting for the replication speed rescue. Remarkably, homologous recombination-defective cells exhibit a high level of endogenous reactive oxygen species. Consistently, homologous recombination-defective cells accumulate spontaneous γH2AX or XRCC1 foci that are abolished by treatment with N-acetyl-cysteine or maintenance at 3% O2. Finally, oxidative stress stimulated homologous recombination, which is suppressed by supplying deoxynucleotide precursors. Therefore, the cellular redox status strongly impacts genome duplication and transmission. Oxidative stress should generate replication stress through different mechanisms, including DNA damage and nucleotide pool imbalance. These data highlight the intricacy of endogenous replication and oxidative stresses, which are both evoked during tumorigenesis and senescence initiation

  10. Environmental Assessment: Landscape Multiple Areas at Grand Forks Air Force Base

    Science.gov (United States)

    2006-03-01

    and other non- cultivated areas create a prairie-land mosaic of grasses, legumes, and wild herbaceous plants. Included in the grasses and legumes...vegetation species are tall wheat grass, brome grass, Kentucky bluegrass, sweet clover, and alfalfa . Herbaceous plants include little bluestem...Grand Forks County consists primarily of cultivated crops with remaining land used for pasture and hay, urban development, recreation, and wildlife

  11. An Archeological Survey in the Gypsum Breaks on the Elm Fork of the Red River,

    Science.gov (United States)

    1979-01-01

    Hughes (1973). One of the known sites was reported by James Shaeffer in 1960. The Hughes survey was based on an earlier plan to dam Fish Creek, and he...limits. Artifacts recovered include Trinity, Ensor , Darl, Ellis, Gary, Meserve, Frio, and Abasolo projectile points, Clear Fork gouges, burins and...Marcos, Ensor , Palmillas and Trinity. From the material of these four sites an estimated range of dates was proposed at 2000 B.C. to 1000 A.D. Eight

  12. Environmental Assessment: Replace Sanitary Sewer from Building 801 to Lagoons at Grand Forks AFB, North Dakota

    Science.gov (United States)

    2010-09-01

    for Grand Forks AFB include Marsh Milkweed , Bottlebrush Sedge, Prairie Cordgrass, Wooly Sedge, Awl- Fruit Sedge, Baltic Rush, Wool-Grass, Soft-stem...AFB has a humid continental climate that is characterized by frequent and drastic weather changes. The summers are short and humid with frequent...Vegetation is robust at GFAFB wetlands and many are characterized as typical prairie potholes found within the northern plains ecoregion. Wetlands

  13. Nanocharacterization of Soft Biological Samples in Shear Mode with Quartz Tuning Fork Probes

    OpenAIRE

    Manel Puig-Vidal; Laura Gonzalez; Jorge Otero

    2012-01-01

    Quartz tuning forks are extremely good resonators and their use is growing in scanning probe microscopy. Nevertheless, only a few studies on soft biological samples have been reported using these probes. In this work, we present the methodology to develop and use these nanosensors to properly work with biological samples. The working principles, fabrication and experimental setup are presented. The results in the nanocharacterization of different samples in different ambients are presented by...

  14. Noncontact atomic force microscopy in liquid environment with quartz tuning fork and carbon nanotube probe

    DEFF Research Database (Denmark)

    Kageshima, M.; Jensenius, Henriette; Dienwiebel, M.

    2002-01-01

    A force sensor for noncontact atomic force microscopy in liquid environment was developed by combining a multiwalled carbon nanotube (MWNT) probe with a quartz tuning fork. Solvation shells of octamethylcyclotetrasiloxane surface were detected both in the frequency shift and dissipation. Due...... to the high aspect ratio of the CNT probe, the long-range background force was barely detectable in the solvation region. (C) 2002 Elsevier Science B.V. All rights reserved....

  15. Enhanced enzymatic hydrolysis of poplar bark by combined use of gamma ray and dilute acid for bioethanol production

    Science.gov (United States)

    Chung, Byung Yeoup; Lee, Jae Taek; Bai, Hyoung-Woo; Kim, Ung-Jin; Bae, Hyeun-Jong; Gon Wi, Seung; Cho, Jae-Young

    2012-08-01

    Pretreatment of poplar bark with a combination of sulfuric acid (3%, w/w, H2SO4) and gamma irradiation (0-1000 kGy) was performed in an attempt to enhance enzymatic hydrolysis for bioethanol production. The yields of reducing sugar were slightly increased with an increasing irradiation dose, ranging from 35.4% to 51.5%, with a 56.1% reducing sugar yield observed after dilute acid pretreatment. These results clearly showed that soluble sugars were released faster and to a greater extent in dilute acid-pretreated poplar bark than in gamma irradiation-pretreated bark. When combined pretreatment was carried out, a drastic increase in reducing sugar yield (83.1%) was found compared with individual pretreatment, indicating the possibility of increasing the convertibility of poplar bark following combined pretreatment. These findings are likely associated with cellulose crystallinity, lignin modification, and removal of hemicelluloses.

  16. Effect of technological parameters and wood properties on cutting power in plane milling of juvenile poplar wood

    Directory of Open Access Journals (Sweden)

    Barcík Štefan

    2008-10-01

    Full Text Available This paper presents the results of experimental measurements aimed at observing the effect of technological parameters (cutting speed vc and feed speed vf , type of wood (juvenile wood and mature wood andwood species (aspen Populus tremula, L. and hybrid poplar Populus x Euramericana „Serotina“ on cutting power during plane milling of poplar wood. The results showed the reduction of cutting power with the decrease of cutting speed and feed speed. Lower cutting power was also measured in milling hybrid poplar than in milling aspen. The test also confirmed the effect of different anatomical and chemical structure of juvenile wood in relation to mature wood on different physical and mechanical properties of such wood and hence also on the cutting power in processing juvenile wood.

  17. Wastewater and sewage sludge application to willows and poplars grown in lysimeters-Plant response and treatment efficiency

    Energy Technology Data Exchange (ETDEWEB)

    Dimitriou, I.; Aronsson, P. [Department of Crop Production Ecology, Swedish University of Agricultural Sciences (SLU), Ecology building, P.O. Box 7043, SE 750 07 Uppsala (Sweden)

    2011-01-15

    Adding nutrient-rich residues such as municipal wastewater and sludge to willow and poplar short-rotation coppice gives more cost-effective and sustainable cultivation, but leaching to groundwater and disturbance to plant growth must be avoided. The effects of adding municipal wastewater irrigation to willows and poplars and sewage sludge to willows were compared in a two-year experiment. Wastewater irrigation enhanced plant growth. Near-zero nitrate-N concentrations occurred in drainage water when the root system of both species was well-established. The ability to retain N and P was satisfactory when poplars and willows were irrigated with wastewater. Thus relatively high additions of N and P with wastewater will probably not contaminate groundwater, but potential P leaching should not be underestimated. The same applies for sewage sludge applications to willow. (author)

  18. A Field Trial of TCE Phytoremediation by Genetically Modified Poplars Expressing Cytochrome P450 2E1.

    Science.gov (United States)

    Legault, Emily K; James, C Andrew; Stewart, Keith; Muiznieks, Indulis; Doty, Sharon L; Strand, Stuart E

    2017-06-06

    A controlled field study was performed to evaluate the effectiveness of transgenic poplars for phytoremediation. Three hydraulically contained test beds were planted with 12 transgenic poplars, 12 wild type (WT) poplars, or left unplanted, and dosed with equivalent concentrations of trichloroethylene (TCE). Removal of TCE was enhanced in the transgenic tree bed, but not to the extent of the enhanced removal observed in laboratory studies. Total chlorinated ethene removal was 87% in the CYP2E1 bed, 85% in the WT bed, and 34% in the unplanted bed in 2012. Evapotranspiration of TCE from transgenic leaves was reduced by 80% and diffusion of TCE from transgenic stems was reduced by 90% compared to WT. Cis-dichloroethene and vinyl chloride levels were reduced in the transgenic tree bed. Chloride ion accumulated in the planted beds corresponding to the TCE loss, suggesting that contaminant dehalogenation was the primary loss fate.

  19. Continuous hydrologic simulation of runoff for the Middle Fork and South Fork of the Beargrass Creek basin in Jefferson County, Kentucky

    Science.gov (United States)

    Jarrett, G. Lynn; Downs, Aimee C.; Grace-Jarrett, Patricia A.

    1998-01-01

    The Hydrological Simulation Pro-gram-FORTRAN (HSPF) was applied to an urban drainage basin in Jefferson County, Ky to integrate the large amounts of information being collected on water quantity and quality into an analytical framework that could be used as a management and planning tool. Hydrologic response units were developed using geographic data and a K-means analysis to characterize important hydrologic and physical factors in the basin. The Hydrological Simulation Program FORTRAN Expert System (HSPEXP) was used to calibrate the model parameters for the Middle Fork Beargrass Creek Basin for 3 years (June 1, 1991, to May 31, 1994) of 5-minute streamflow and precipitation time series, and 3 years of hourly pan-evaporation time series. The calibrated model parameters were applied to the South Fork Beargrass Creek Basin for confirmation. The model confirmation results indicated that the model simulated the system within acceptable tolerances. The coefficient of determination and coefficient of model-fit efficiency between simulated and observed daily flows were 0.91 and 0.82, respectively, for model calibration and 0.88 and 0.77, respectively, for model confirmation. The model is most sensitive to estimates of the area of effective impervious land in the basin; the spatial distribution of rain-fall; and the lower-zone evapotranspiration, lower-zone nominal storage, and infiltration-capacity parameters during recession and low-flow periods. The error contribution from these sources varies with season and antecedent conditions.

  20. Vibration amplitude of a tip-loaded quartz tuning fork during shear force microscopy scanning

    Science.gov (United States)

    Sandoz, P.; Friedt, J.-M.; Carry, É.

    2008-08-01

    This Note reports on experimental results obtained with a recently published vision method for in-plane vibration measurement [Sandoz et al., Rev. Sci. Instrum. 78, 023706 (2007)]. The latter is applied to a tip-loaded quartz tuning fork frequently used in scanning probe microscopy for shear-force monitoring of the tip-sample distance. The vibration amplitude of the tip-loaded prong is compared to that of the free one and the damping induced by tip-surface interactions is measured. The tuning-fork behavior is characterized during approaches from free space to surface contact. Tip-surface contact is clearly identified by a drastic reduction in the prong vibration amplitude. However, no differences were observed between hydrophilic and hydrophobic surfaces. Experiments reported here show that the vibration amplitude of the quartz tuning fork in free space is a good estimate of the vibration amplitude of the tip interacting with the sample surface during shear force sample-tip feedback. The experimental setup for measuring the amplitude is easily integrated in an inverted microscope setup on which the shear force microscope is installed for simultaneous scanning probe and optical microscopy analysis of the sample.

  1. A secure and efficient cryptographic hash function based on NewFORK-256

    Directory of Open Access Journals (Sweden)

    Harshvardhan Tiwari

    2012-11-01

    Full Text Available Cryptographic hash functions serve as a fundamental building block of information security and are used in numerous security applications and protocols such as digital signature schemes, construction of MAC and random number generation, for ensuring data integrity and data origin authentication. Researchers have noticed serious security flaws and vulnerabilities in most widely used MD and SHA family hash functions. As a result hash functions from FORK family with longer digest value were considered as good alternatives for MD5 and SHA-1, but recent attacks against these hash functions have highlighted their weaknesses. In this paper we propose a dedicated hash function MNF-256 based on the design principle of NewFORK-256. It takes 512 bit message blocks and generates 256 bit hash value. A random sequence is added as an additional input to the compression function of MNF-256. Three branch parallel structure and secure compression function make MNF-256 an efficient, fast and secure hash function. Various simulation results indicate that MNF-256 is immune to common cryptanalytic attacks and faster than NewFORK-256.

  2. A tip-attached tuning fork sensor for the control of DNA translocation through a nanopore

    Science.gov (United States)

    Hyun, Changbae; Kaur, Harpreet; Huang, Tao; Li, Jiali

    2017-02-01

    In this work, we demonstrate that a tuning fork can be used as a force detecting sensor for manipulating DNA molecules and for controlling the DNA translocation rate through a nanopore. One prong of a tuning fork is glued with a probe tip which DNA molecules can be attached to. To control the motion and position of the tip, the tuning fork is fixed to a nanopositioning system which has sub-nanometer position control. A fluidic chamber is designed to fulfill many requirements for the experiment: for the access of a DNA-attached tip approaching to a nanopore, for housing a nanopore chip, and for measuring ionic current through a solid-state nanopore with a pair of electrodes. The location of a nanopore is first observed by transmission electron microscopy, and then is determined inside the liquid chambers with an optical microscope combined with local scanning the probe tip on the nanopore surface. When a DNA-immobilized tip approaches a membrane surface near a nanopore, free ends of the immobilized DNA strings can be pulled and trapped into the pore by an applied voltage across the nanopore chip, resulting in an ionic current reduction through the nanopore. The trapped DNA molecules can be lifted up from the nanopore at a user controlled speed. This integrated apparatus allows manipulation of biomolecules (DNA, RNA, and proteins) attached to a probe tip with sub-nanometer precision, and simultaneously allows measurement of the biomolecules by a nanopore device.

  3. On Bandwidth Characteristics of Tuning Fork Micro-Gyroscope with Mechanically Coupled Sense Mode

    Directory of Open Access Journals (Sweden)

    Yunfang Ni

    2014-07-01

    Full Text Available The bandwidth characteristics of a tuning fork micro-gyroscope with mechanically coupled sense mode were investigated in this paper to provide some references for mechanical bandwidth design. The concept of sense mode mechanical coupling is introduced first. Theoretical frequency response analyses were then carried out on the mechanical part of the gyroscope. Equations representing the relationships between the differential output signal and the frequency of the input angular rate were deduced in full frequency range and further simplified in low frequency range. Based on these equations, bandwidth characteristics under ideal and non-ideal conditions are discussed. Analytical results show that under ideal conditions, the bandwidth characteristics of a tuning fork micro-gyroscope are similar to those of a single mass micro-gyroscope, but under non-ideal conditions, especially when sense mass and/or stiffness are asymmetric, the bandwidth characteristics would be quite different because the in-phase mode would participate in the anti-phase vibration response. Experimental verifications were carried out on two micro-gyroscope prototypes designed in our laboratory. The deduced equations and analytical results can be used in guiding the mechanical bandwidth design of tuning fork micro-gyroscopes with mechanically coupled sense mode.

  4. On bandwidth characteristics of tuning fork micro-gyroscope with mechanically coupled sense mode.

    Science.gov (United States)

    Ni, Yunfang; Li, Hongsheng; Huang, Libin; Ding, Xukai; Wang, Haipeng

    2014-01-01

    The bandwidth characteristics of a tuning fork micro-gyroscope with mechanically coupled sense mode were investigated in this paper to provide some references for mechanical bandwidth design. The concept of sense mode mechanical coupling is introduced first. Theoretical frequency response analyses were then carried out on the mechanical part of the gyroscope. Equations representing the relationships between the differential output signal and the frequency of the input angular rate were deduced in full frequency range and further simplified in low frequency range. Based on these equations, bandwidth characteristics under ideal and non-ideal conditions are discussed. Analytical results show that under ideal conditions, the bandwidth characteristics of a tuning fork micro-gyroscope are similar to those of a single mass micro-gyroscope, but under non-ideal conditions, especially when sense mass and/or stiffness are asymmetric, the bandwidth characteristics would be quite different because the in-phase mode would participate in the anti-phase vibration response. Experimental verifications were carried out on two micro-gyroscope prototypes designed in our laboratory. The deduced equations and analytical results can be used in guiding the mechanical bandwidth design of tuning fork micro-gyroscopes with mechanically coupled sense mode.

  5. Land use and wind direction drive hybridization between cultivated poplar and native species in a Mediterranean floodplain environment.

    Science.gov (United States)

    Paffetti, Donatella; Travaglini, Davide; Labriola, Mariaceleste; Buonamici, Anna; Bottalico, Francesca; Materassi, Alessandro; Fasano, Gianni; Nocentini, Susanna; Vettori, Cristina

    2018-01-01

    Deforestation and intensive land use management with plantations of fast-growing tree species, like Populus spp., may endanger native trees not only by eliminating or reducing their habitats, but also by diminishing their species integrity via hybridization and introgression. The genus Populus has persistent natural hybrids because clonal and sexual reproduction is common. The objective of this study was to assess the effect of land use management of poplar plantations on the spatial genetic structure and species composition in poplar stands. Specifically, we studied the potential breeding between natural and cultivated poplar populations in the Mediterranean environment to gain insight into spontaneous hybridization events between exotic and native poplars; we also used a GIS-based model to evaluate the potential threats related to an intensive land use management. Two study areas, both near to poplar plantations (P.×euramericana), were designated in the native mixed stands of P. alba, P. nigra and P.×canescens within protected areas. We found that the spatial genetic structure differed between the two stands and their differences depended on their environmental features. We detected a hybridization event with P.×canescens that was made possible by the synchrony of flowering between the poplar plantation and P.×canescens and facilitated by the wind intensity and direction favoring the spread of pollen. Taken together, our results indicate that natural and artificial barriers are crucial to mitigate the threats, and so they should be explicitly considered in land use planning. For example, our results suggest the importance of conserving rows of trees and shrubs along rivers and in agricultural landscapes. In sum, it is necessary to understand, evaluate, and monitor the spread of exotic species and genetic material to ensure effective land use management and mitigation of their impact on native tree populations. Copyright © 2017 Elsevier B.V. All rights

  6. Root proteome response to growth on tannery waste in three different poplar species with various adaptation abilities

    Directory of Open Access Journals (Sweden)

    Zemleduch-Barylska A.

    2013-04-01

    Full Text Available In our study we compared growth of three poplar clones (Populus tremula ×alba, P. alba ‘Villafranca” and P. nigra on chromium-containing solid tannery waste. Tolerance index of saplings ranged from only 25% for P. nigra up to 80% for P. tremula x alba. Standard morphological, chemical and biochemical analyses also confirmed significant differences in reaction of all tested clones to such growth conditions. Preliminary proteomic study showed an unequal level of changes in protein profiles from roots in different poplars.

  7. Valanginian ammonites in East Greenland

    DEFF Research Database (Denmark)

    Alsen, Peter

    2001-01-01

    ammonites, Boreal, Tethys, bed-by-bed collection, Valanginian, Wollaston Forland, East Greenland......ammonites, Boreal, Tethys, bed-by-bed collection, Valanginian, Wollaston Forland, East Greenland...

  8. Hybrid poplar plantations are suitable habitat for reintroduced forest herbs with conservation status.

    Science.gov (United States)

    Boothroyd-Roberts, Kathleen; Gagnon, Daniel; Truax, Benoit

    2013-01-01

    Plantations of fast-growing tree species may be of use in conservation by accelerating the restoration of forest habitat on abandoned farmland and increasing connectivity in fragmented landscapes. The objective of this study was to determine if hybrid poplar plantations can be suitable habitats for the reintroduction of native forest plant species and, if so, which abiotic factors predict successful reintroduction. Four species of forest herb species (Trillium grandiflorum, Sanguinaria canadensis, Maianthemum racemosum, Asarum canadense), of which three have legal conservation status, were transplanted into experimental plantations of two hybrid poplar clones and nearby second-growth woodlots at six sites in southern Quebec, Canada. The transplanted individuals were protected from deer browsing with exclusion cages. After two years, the plant responses of all four species were stable or increased over two years in both types of hybrid poplar plantations. Sanguinaria showed a better response in the plantations than in the woodlots, preferring the rich post-agricultural soils of the plantations with low C:N ratios. Asarum and Maianthemum showed no significant difference between stand types, while Trillium grew better in the woodlots than in the plantations. Much of the variability in the response of the latter three species was unexplained by the measured environmental variables. These results suggest that certain forest herb species can be reintroduced as juvenile plants into plantations, knowing that their spontaneous recolonization is often limited by dispersal and/or seedling establishment. Plantations could also contribute to the conservation of biodiversity by providing an environment for the cultivation of forest herb species as an alternative to their destructive harvest from natural populations.

  9. Influence of Climate on the Growth of Hybrid Poplar in Michigan

    Directory of Open Access Journals (Sweden)

    Sophan Chhin

    2010-11-01

    Full Text Available This study examined the influence of climate on cumulative and interannual growth patterns of 18 full-sib families of hybrid poplars (Populus × smithii Boivin derived from different geographical locations (state counties of natural stands of aspen parents (trembling aspen (Populus tremuloides Michx. and bigtooth aspen (Populus grandidentata Michx.. The hybrids were subsequently planted in 1982 in southern mid-Michigan at Michigan State University (MSU Sandhill Research Area. Cumulative measures of hybrid poplar productivity (diameter, height, basal area, and stem volume in 2009 (28 years since plantation establishment were related via correlation analysis to geographical distances and climatic variables (temperature and precipitation between parental county locations and between parental locations and the plantation site. Tree-ring analysis methods (dendrochronology were also used to quantify the influence of climate (i.e., mean temperature and total precipitation at monthly and 3-month seasonal scales on interannual basal area growth rates of hybrid poplars. Analyses of cumulative measures of growth indicated a maternal effect: full-sib families had higher productivity if they had a maternal parent originating from a state county that was close to or had higher temperature (annual and summer and summer precipitation than corresponding parameters of the planting site. Principal component analysis indicated that 17 of the 18 full-sib families shared a large amount of common growth variation. Dendrochronological analyses of interannual growth-climate relationships indicated that growth was mainly affected by the degree of late summer to fall moisture stress in both the current and previous growth season, and the degree of winter harshness.

  10. Challenging synergistic activity of poplar-bacteria association for the Cd phytostabilization.

    Science.gov (United States)

    C, Cocozza; D, Trupiano; G, Lustrato; G, Alfano; D, Vitullo; A, Falasca; T, Lomaglio; V, De Felice; G, Lima; G, Ranalli; S, Scippa; R, Tognetti

    2015-12-01

    The synergistic activity between plants and microorganisms may contribute to the implementation of proactive management strategies in the stabilization of contaminated sites, although heavy metals, such as cadmium (Cd), are potentially toxic to them. The aim of this study was to evaluate the degree of tolerance to Cd contamination (supplying twice 40 mg kg(-1) of Cd) in poplar cuttings [clone I-214, P. × euramericana (Dode) Guinier] inoculated or not with two concentrations of Serratia marcescens strain (1 × 10(7) CFU/g and 2 × 10(7) CFU/g of potting mix). The response of the plant-bacteria system to excess Cd was investigated with special reference to the structural traits of plants and the functional efficiency of bacteria. Bacterial colonization and substrate components were previously assessed in order to define the best solution for formulating the experimental plant growth media. The tested plant-bacteria association, especially when bacteria were provided in double concentration, stimulated specific tolerance mechanisms to Cd through the promotion of the poplar growth. Inoculated plants produced larger leaves and increased stem diameter, while roots grew longer and wider in Cd-treated plants. The effect of bacterial inoculum on plant growth traits and metal partitioning in plant organs was assessed in order to define the potential of this poplar clone to be a suitable candidate for phytostabilization of Cd-contaminated soil. The final effect of the inoculation with bacteria, which alleviated the metal load and Cd phytotoxicity due to their bioaccumulation ability, suggests promising phytostabilization potential of these plant-bacteria associations.

  11. Isolation and Identification of Phosphobacteria in Poplar Rhizosphere from Different Regions of China

    Institute of Scientific and Technical Information of China (English)

    LIU Hui; WU Xiao-Qin; REN Jia-Hong; YE Jian-Ren

    2011-01-01

    A few soil microorganisms can convert insoluble forms of phosphorus (P) to an accessible form to increase plant yields. The objectives of this study were to isolate, screen and identify the phosphobacteria, i.e., phosphate-solubilizing bacteria (PSB) and phosphate-mineralizing bacteria (PMB), in some poplar plantations and to select potential microbial inoculants that could increase the P uptake by plants. Seventy four PSB strains and 138 PMB strains were preliminarily screened from 797 colonies isolated from the rhizosphere soil of poplar by the visible decolorization in the National Botanical Research Institute's phosphate growth medium (NBRIP) containing a pH indicator of bromophenol and by the clear/halo zone on yeast malt agar plate, respectively. Then, based on the solubilization of Ca3(PO4)2 in liquid NBRIP medium and the mineralization of lecithin in liquid Menkina medium, 15 PSB strains and 7 PMB strains were further determined for their abilities to solubilize Ca3(PO4)2 and to mineralize lecithin. The results showed that the 15 PSB strains exhibited inorganic P-solubilizing abilities ranging between 376.62 and 669.56 mg L-1 and the 7 PMB strains exhibited organic P-mineralizing abilities varying from 0.32 to 1.56 mg L-1 three days after incubation. Three of PSB strains with the highest P-solubilizing ability, named JW-JS1, JW-JS2 and JW-SX2, were all preliminarily identified as Pseudomonas fluorescens,while two of PMB strains with the highest P-mineralizing ability, named JYZ-SD1 and JYT-JS2, were preliminarily identified as Bacillus cereus and Bacillus subtilis, respectively. All the efficient PSB and PMB strains should be further studied under both pot culture and field conditions to test their beneficial effects on poplar.

  12. Hypoxia Affects Nitrogen Uptake and Distribution in Young Poplar (Populus × canescens Trees.

    Directory of Open Access Journals (Sweden)

    Bin Liu

    Full Text Available The present study with young poplar trees aimed at characterizing the effect of O2 shortage in the soil on net uptake of NO3- and NH4+ and the spatial distribution of the N taken up. Moreover, we assessed biomass increment as well as N status of the trees affected by O2 deficiency. For this purpose, an experiment was conducted in which hydroponically grown young poplar trees were exposed to hypoxic and normoxic (control conditions for 14 days. 15N-labelled NO3- and NH4+ were used to elucidate N uptake and distribution of currently absorbed N and N allocation rates in the plants. Whereas shoot biomass was not affected by soil O2 deficiency, it significantly reduced root biomass and, consequently, the root-to-shoot ratio. Uptake of NO3- but not of NH4+ by the roots of the trees was severely impaired by hypoxia. As a consequence of reduced N uptake, the N content of all poplar tissues was significantly diminished. Under normoxic control conditions, the spatial distribution of currently absorbed N and N allocation rates differed depending on the N source. Whereas NO3- derived N was mainly transported to the younger parts of the shoot, particularly to the developing and young mature leaves, N derived from NH4+ was preferentially allocated to older parts of the shoot, mainly to wood and bark. Soil O2 deficiency enhanced this differential allocation pattern. From these results we assume that NO3- was assimilated in developing tissues and preferentially used to maintain growth and ensure plant survival under hypoxia, whereas NH4+ based N was used for biosynthesis of storage proteins in bark and wood of the trees. Still, further studies are needed to understand the mechanistic basis as well as the eco-physiological advantages of such differential allocation patterns.

  13. Evaluation on Salt Tolerance of 25 Species of Poplar Cuttings in Lab

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The growth and morphological characteristics of 25 species of poplar were investigated. The cuttings were cultivated in Hoagland Nutrient Solution, which was made with sodium chloride (NaCl) solutions of concentration of 1.00, 3.00, 4.00, 5.00, 6.00, and 8.00 g/L, respectively. Under such salt stress, the new branch length and biomass accumulation of cuttings decreased as the salt concentration increased. The root/shoot ratio of most of species showed an escalation and then reduction tendency. Under low con...

  14. Phytoscreening and phytoextraction of heavy metals at Danish polluted sites using willow and poplar trees

    DEFF Research Database (Denmark)

    Nielsen, Mette Algreen; Trapp, Stefan; Rein, Arno

    2014-01-01

    The main purpose of this study was to determine typical concentrations of heavy metals (HM) in wood from willows and poplars, in order to test the feasibility of phytoscreening and phytoextraction of HM. Samples were taken from one strongly, one moderately, and one slightly polluted site and from....... Concentrations in wood from the highly polluted site were significantly elevated, compared to references, in particular for willow. The conclusion from these results is that tree coring could be used successfully to identify strongly heavy metal-polluted soil for Cd, Cu, Ni, Zn, and that willow trees were...

  15. Phasing Variants in Poplar Trees using a Hybrid of Short & Long Read Technologies

    Energy Technology Data Exchange (ETDEWEB)

    Schackwitz, Wendy; Martin, Joel; Lipzen, Anna; Pennacchio, Len; Tuskan, Gerald

    2013-03-26

    Poplar grow throughout the West coast & are adapted to extremely variable conditions. To examine what allows for this wide range of growth conditions, Jerry Tuskan's team has collected 1000 different individuals from British Columbia to California. In 2009, three Common Gardens were established where each individual was cloned in triplicate. Nearly all of these trees have been sequenced using short read technology, revealing a huge degree of variation in genotype. Correlating this genomic variation to phenotype would be greatly be strengthened if the variants could be phased into long haplotype blocks.

  16. Remedial investigation/feasibility study of the Clinch River/Poplar Creek operable unit. Volume 5

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-03-01

    This volume is in support of the findings of an investigation into contamination of the Clinch River and Poplar Creek near the Oak Ridge Reservation (for more than 50 years, various hazardous and radioactive substances have been released to the environment as a result of operations and waste management activities there). It addresses the quality assurance objectives for measuring the data, presents selected historical data, contains data from several discrete water characterization studies, provides data supporting the sediment characterization, and contains data related to several biota characterization studies.

  17. Three-dimensional (3D) structure model and its parameters for poplar shelterbelts

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    The spatial functions of surface area density(vegetative surface area per unit canopy volume) and cubic density(vegetative volume per unit canopy volume) have been used as two three-dimensional(3D) structural descriptors for shelterbelt.The functions were defined by models as a general case.However,sub-models such as surface area,volume,and corresponding distributions were not explicitly defined for poplar trees,which are a dominant woody species in shelterbelts all over China,and this limits applications of the models in China and elsewhere.In order to define and develop these sub-models for shelterbelts,poplar trees were destructively sampled from multiple-row shelterbelts and then were measured for their surface area and volume.Using these measurements,we estimated parameters to define their equations explicitly.Based on the architecture and planting patterns of trees in shelterbelts,the distribution of the surface areas and volumes vertically and across the width for different tree heights were constructed for the three components of trunks,branches and leaves.Incorporating the defined equations into the models,we described the 3D structure of a multiple-row poplar shelterbelt.The results showed that,the spatial change in magnitude of surface area density(0.215-10.131 m2/m3) or cubic density(0.00007-0.04667 m3/m3) in shelterbelts is large and their distributions are not uniform.The assumption for boundary-layer flow modeling efforts that the 3D distribution of shelterbelt structure was uniform is not the case in field.The 3D structure model not only can be used to model the flow field as influenced by each tree component,but also can express the entire aerodynamic characteristics of a shelterbelt.The methodologies and equations that are developed in this study can be applied to estimate the 3D structure of a shelterbelt with a design similar to our studied poplar shelterbelts in terms of species composition and planting patterns.The fitted models can be used to

  18. Biomass yield and fuel characteristics of short-rotation coppice (willow, poplar, empress tree)

    Energy Technology Data Exchange (ETDEWEB)

    Maier, J.; Vetter, R. [Institute for Land Management Compatible to Environmental Requirements, Muellheim (Germany)

    2004-07-01

    In two pedo-climatic different regions in the state of Baden-Wuerttemberg three shortrotation coppices willow, poplar and empress tree were tested with regard to their biomass productivity on arable land and to their properties for energetic use. Between 8 and 13 tons of dry matter per hectare and year could be produced under extensive cultivation conditions, over 15 tons with irrigation. Due to their composition, it can be assumed that their use as solid fuel in a biomass combustor is just as unproblematic as with forest timber. (orig.)

  19. Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs with an emphasis on poplar

    Directory of Open Access Journals (Sweden)

    Duplessis Sébastien

    2011-02-01

    Full Text Available Abstract Background Plant inducible immunity includes the accumulation of a set of defense proteins during infection called pathogenesis-related (PR proteins, which are grouped into families termed PR-1 to PR-17. The PR-5 family is composed of thaumatin-like proteins (TLPs, which are responsive to biotic and abiotic stress and are widely studied in plants. TLPs were also recently discovered in fungi and animals. In the poplar genome, TLPs are over-represented compared with annual species and their transcripts strongly accumulate during stress conditions. Results Our analysis of the poplar TLP family suggests that the expansion of this gene family was followed by diversification, as differences in expression patterns and predicted properties correlate with phylogeny. In particular, we identified a clade of poplar TLPs that cluster to a single 350 kb locus of chromosome I and that are up-regulated by poplar leaf rust infection. A wider phylogenetic analysis of eukaryote TLPs - including plant, animal and fungi sequences - shows that TLP gene content and diversity increased markedly during land plant evolution. Mapping the reported functions of characterized TLPs to the eukaryote phylogenetic tree showed that antifungal or glycan-lytic properties are widespread across eukaryote phylogeny, suggesting that these properties are shared by most TLPs and are likely associated with the presence of a conserved acidic cleft in their 3D structure. Also, we established an exhaustive catalog of TLPs with atypical architectures such as small-TLPs, TLP-kinases and small-TLP-kinases, which have potentially developed alternative functions (such as putative receptor kinases for pathogen sensing and signaling. Conclusion Our study, based on the most recent plant genome sequences, provides evidence for TLP gene family diversification during land plant evolution. We have shown that the diverse functions described for TLPs are not restricted to specific clades but seem

  20. The Werner and Bloom syndrome proteins help resolve replication blockage by converting (regressed) holliday junctions to functional replication forks.

    Science.gov (United States)

    Machwe, Amrita; Karale, Rajashree; Xu, Xioahua; Liu, Yilun; Orren, David K

    2011-08-16

    Cells cope with blockage of replication fork progression in a manner that allows DNA synthesis to be completed and genomic instability minimized. Models for resolution of blocked replication involve fork regression to form Holliday junction structures. The human RecQ helicases WRN and BLM (deficient in Werner and Bloom syndromes, respectively) are critical for maintaining genomic stability and thought to function in accurate resolution of replication blockage. Consistent with this notion, WRN and BLM localize to sites of blocked replication after certain DNA-damaging treatments and exhibit enhanced activity on replication and recombination intermediates. Here we examine the actions of WRN and BLM on a special Holliday junction substrate reflective of a regressed replication fork. Our results demonstrate that, in reactions requiring ATP hydrolysis, both WRN and BLM convert this Holliday junction substrate primarily to a four-stranded replication fork structure, suggesting they target the Holliday junction to initiate branch migration. In agreement, the Holliday junction binding protein RuvA inhibits the WRN- and BLM-mediated conversion reactions. Importantly, this conversion product is suitable for replication with its leading daughter strand readily extended by DNA polymerases. Furthermore, binding to and conversion of this Holliday junction are optimal at low MgCl(2) concentrations, suggesting that WRN and BLM preferentially act on the square planar (open) conformation of Holliday junctions. Our findings suggest that, subsequent to fork regression events, WRN and/or BLM could re-establish functional replication forks to help overcome fork blockage. Such a function is highly consistent with phenotypes associated with WRN- and BLM-deficient cells.

  1. An Optimal Scheduling Algorithm for Fork-Join Task Graphs%一个调度Fork-Join任务图的最优算法

    Institute of Scientific and Technical Information of China (English)

    李庆华; 阮幼林; 刘干; 蒋盛益; 杨世达

    2005-01-01

    The Fork-Join structure is one of the basic modeling structures for parallel processing. Although some algorithms are able to find an optimal schedule under certain conditions, they ignore to economize processors and minimize the total completion time. This paper presents a Task Duplication based Balance Scheduling(TDBS)algorithm which can generate an optimal schedule for fork-join task graph with a complexity of O(vq+vlogv), where v and q are the number of tasks and processors respectively. By considering workload and idle time slots of the used processors, TDBS algorithm tries to assign tasks to scheduled processors and maximize their utilization. Simulation results show that TDBS algorithm has better speedup and efficiency than other compared algorithms. Therefore,TDBS algorithm is a viable option for practical high performance applications.%Fork-Join任务图是一种并行处理的基本结构.虽然许多算法在任务满足某些条件时能产生最优调度,但往往没有考虑节省处理器个数和减少任务集的总完成时间,从而降低算法的加速比和效率.因此,提出一种基于任务复制的平衡调度算法,其时间复杂度为O(vq+vlogv),v和q分别表示任务集中任务的个数和使用的处理器个数.通过分析已用处理器的负载和空闲时间段,把任务尽量分配到已用的处理器上以均衡负载,从而提高其利用率.实验结果表明,该算法的加速比和总体效率优于其他算法.因此,该算法对于高性能应用程序的调度是一个较好的选择.

  2. Development of SMD 32.768 kHz tuning fork-type crystals using photolithography and selective etching process. Pt. I. Selective etching of an array of quartz tuning fork resonators

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S. [Samsung Electro-Mechanics Co., Ltd., Suwon City (Korea); Kang, K.M. [National Univ. of Technology, Seoul (Korea). Dept. of Materials Engineering

    2001-05-01

    Negative photoresist photolithography was found superior to previously used positive photoresist photolithography to etch array of quartz tuning forks for use in Qualcomm trademark mobile station modem (MSM), 3000{sup TM} central processing unit (CPU), chips of code division multiple access (CDMA), personal communication system (PCS), and global system for mobile communication (GSM) units. Optimum processing condition was devised for reproducible precision etching of Z-cut quartz wafer into array of tuning forks. Tuning fork pattern was transferred via ordinary photolithographical chromium/quartz glass template using a standard single-sided aligner and subsequent negative photoresist development. A tightly adhering and pinhole-free 600/2000 A chromium/gold mask is coated over the developed photoresist pattern which was subsequently stripped in acetone. This procedure was repeated on the backside of the wafer. With protective metallization area of tuning fork geometry thus formed, etching through quartz wafer was done at 80 C in a {+-} 1.5 C controlled bath containing concentrated solution of ammonium bifluoride to remove unwanted area of the quartz wafer. The quality of quartz wafer surface finish after quartz etching depended primarily on the surface finish of quartz wafer prior to etching and the quality of quartz crystals used. At 80 C, selective etching of 100 {mu}m quartz wafer could be effected within 90 min. Reproducible precision selective etching method has thus been established and enables mass production of miniature tuning fork resonators with electrode patterns on them photolithographically. (orig.)

  3. Differential expression profiles of poplar MAP kinase kinases in response to abiotic stresses and plant hormones, and overexpression of PtMKK4 improves the drought tolerance of poplar.

    Science.gov (United States)

    Wang, Lei; Su, Hongyan; Han, Liya; Wang, Chuanqi; Sun, Yanlin; Liu, Fenghong

    2014-07-15

    Mitogen-activated protein kinase (MAPK) cascades are universal signal transduction modules that play essential roles in plant growth, development and stress response. MAPK kinases (MAPKKs), which link MAPKs and MAPKK kinases (MAPKKKs), are integral in mediating various stress responses in plants. However, to date few data about the roles of poplar MAPKKs in stress signal transduction are available. In this study, we performed a systemic analysis of poplar MAPKK gene family expression profiles in response to several abiotic stresses and stress-associated hormones. Furthermore, Populus trichocarpa MAPKK4 (PtMKK4) was chosen for functional characterization. Transgenic analysis showed that overexpression of the PtMKK4 gene remarkably enhanced drought stress tolerance in the transgenic poplar plants. The PtMKK4-overexpressing plants also exhibited much lower levels of H2O2 and higher antioxidant enzyme activity after exposure to drought stress compared to the wide type lines. Besides, some drought marker genes including PtP5CS, PtSUS3, PtLTP3 and PtDREB8 exhibited higher expression levels in the transgenic lines than in the wide type under drought conditions. This study provided valuable information for understanding the putative functions of poplar MAPKKs involved in important signaling pathways under different stress conditions.

  4. The influence of silane coupling agent and poplar particles on the wet-tability, surface roughness, and hardness of UF-bonded wheat straw (Triticum aestivum L.)/poplar wood particleboard

    Institute of Scientific and Technical Information of China (English)

    Seyedeh Masoumeh Hafezi; Kazem Doosthoseini

    2014-01-01

    We used silane coupling agents to improve the bonding ability between wheat straw particles and UF resin, and investigated surface properties (wettability and surface roughness) and hardness of parti-cleboard made from UF-bonded wheat straw (Triticum aestivum L.) combined with poplar wood as affected by silane coupling agent content and straw/poplar wood particle ratios. We manufactured one-layered particleboard panels at four different ratios of straw to poplar wood par-ticles (0%, 15%, 30% and 45% wheat straw) and silane coupling agent content at three levels of 0, 5% and 10%. Roughness measurements, average roughness (Ra), mean peak-to-valley height (Rz), and root mean square roughness (Rq) were measured on unsanded samples by using a fine stylus tracing technique. We obtained contact angle measurements by using a goniometer connected to a digital camera and computer sys-tem. Boards containing greater amounts of poplar particles had superior hardness compared to control samples and had lower wettability. Panels made with higher amounts of silane had lower Rq values.

  5. Fluxus East / Petra Stegmann

    Index Scriptorium Estoniae

    Stegmann, Petra

    2008-01-01

    Näitusest "Fluxus East" Kumu Kunstimuuseumis. Fluxuse liikumisest leedu kunstniku George Maciunase (1931-1978) eestvedamisel. Liikumise ilmingutest Eestis (happeningid, muusikaaktsioonid, visuaalne poeesia, mail art). Kuraator Petra Stegmann, kujundaja Andrea Pichl

  6. East- African Medical Journal

    African Journals Online (AJOL)

    East African Medical Journal Vol 83 No. 8 August 2006 ... urology, ENT and orthopaedic groups and these ... no significant difference in orthopaedic patients mortality' with standard; we .... applying TRISS analysis to pediatric blunt trauma.

  7. EAST AFRICAN MEDICAL JOURNAL

    African Journals Online (AJOL)

    2001-12-01

    Dec 1, 2001 ... DIETARY PATTERNS AND DENTAL CARIES IN NURSERY SCHOOL CHILDREN IN NAIROBI ..... bottle act as a bacterial substrate and especially when the ... children for their co-operation, Colgate Palmolive (East Africa) for.

  8. Hydrology of the North Fork of the Right Fork of Miller Creek, Carbon County, Utah, before, during, and after underground coal mining

    Science.gov (United States)

    Slaughter, C.B.; Freethey, G.W.; Spangler, L.E.

    1995-01-01

    From 1988-92 the U.S. Geological Survey, in cooperation with the Utah Division of Oil, Gas, and Mining, studied the effects of underground coal mining and the resulting subsidence on the hydrologic system near the North Fork of the Right Fork of Miller Creek, Carbon County, Utah. The subsidence caused open fractures at land surface, debris slides, and rockfalls in the canyon above the mined area. Land surface subsided and moved several feet horizontally. The perennial stream and a tributary upstream from the mined area were diverted below the ground by surface fractures where the overburden thickness above the Wattis coal seam is 300 to 500 feet. The reach downstream was dry but flow resumed where the channel traversed the Star Point Sandstone, which forms the aquifer below the coal seams where ground-water discharge provides new base flow. Concentrations of dissolved constituents in the stream water sampled just downstream from the mined area increased from about 300 mg/L (milligrams per liter) to more than 1,500 mg/L, and the water changed from primarily a magnesium calcium bicarbonate to primarily a magnesium sulfate type. Monitored water levels in two wells completed in the perched aquifer(s) above the mine indicate that fractures from subsidence- related deformation drained the perched aquifer in the Blackhawk Formation. The deformation also could have contributed to the decrease in discharge of three springs above the mined area, but discharge from other springs in the area did not change ubstantially; thus, the relation between subsidence and spring discharge, if any, is not clear. No significant changes in the chemical character of water discharging from springs were detected, but the dissolved-solids concentration in water collected from a perched sandstone aquifer overlying the mined coal seams increased during mining activity.

  9. Calibration of quartz tuning fork spring constants for non-contact atomic force microscopy: direct mechanical measurements and simulations

    Directory of Open Access Journals (Sweden)

    Jens Falter

    2014-04-01

    Full Text Available Quartz tuning forks are being increasingly employed as sensors in non-contact atomic force microscopy especially in the “qPlus” design. In this study a new and easily applicable setup has been used to determine the static spring constant at several positions along the prong of the tuning fork. The results show a significant deviation from values calculated with the beam formula. In order to understand this discrepancy the complete sensor set-up has been digitally rebuilt and analyzed by using finite element method simulations. These simulations provide a detailed view of the strain/stress distribution inside the tuning fork. The simulations show quantitative agreement with the beam formula if the beam origin is shifted to the position of zero stress onset inside the tuning fork base and torsional effects are also included. We further found significant discrepancies between experimental calibration values and predictions from the shifted beam formula, which are related to a large variance in tip misalignment during the tuning fork assembling process.

  10. Replication fork progression is paused in two large chromosomal zones flanking the DNA replication origin in Escherichia coli.

    Science.gov (United States)

    Akiyama, Masahiro Tatsumi; Oshima, Taku; Chumsakul, Onuma; Ishikawa, Shu; Maki, Hisaji

    2016-08-01

    Although the speed of nascent DNA synthesis at individual replication forks is relatively uniform in bacterial cells, the dynamics of replication fork progression on the chromosome are hampered by a variety of natural impediments. Genome replication dynamics can be directly measured from an exponentially growing cell population by sequencing newly synthesized DNA strands that were specifically pulse-labeled with the thymidine analogue 5-bromo-2'-deoxyuridine (BrdU). However, a short pulse labeling with BrdU is impracticable for bacteria because of poor incorporation of BrdU into the cells, and thus, the genomewide dynamics of bacterial DNA replication remain undetermined. Using a new thymidine-requiring Escherichia coli strain, eCOMB, and high-throughput sequencing, we succeeded in determining the genomewide replication profile in bacterial cells. We also found that fork progression is paused in two ~200-kb chromosomal zones that flank the replication origin in the growing cells. This origin-proximal obstruction to fork progression was overcome by an increased thymidine concentration in the culture medium and enhanced by inhibition of transcription. These indicate that DNA replication near the origin is sensitive to the impediments to fork progression, namely a scarcity of the DNA precursor deoxythymidine triphosphate and probable conflicts between replication and transcription machineries.

  11. Silicon carbide resonant tuning fork for microsensing applications in high-temperature and high G-shock environments

    Institute of Scientific and Technical Information of China (English)

    David R Myers; Kan Bun Cheng; Babak Jamshidi; Robert G Azevedo; Debbie G Senesky; Li Chen; Mehran Mehregany; Muthu B J Wijesundara; Albert P Pisano

    2012-01-01

    We present the fabrication and testing of a silicon carbide (SiC) balanced mass doublended tuning fork that survives harsh environments without compromising the device strain sensitivity and resolution bandwidth. The device features a material stack that survives corrosive environments and enables high-temperature operation. To perform hightemperature testing, a specialized setup was constructed that allows the tuning fork to be characterized using traditional silicon electronics. The tuning fork has been operated at 600°C in the presence of dry steam for short durations. This tuning fork has also been tested to 64 000 G using a hard-launch, soft-catch shock implemented with a light gas gun. However, the device still has a strain sensitivity of 66 Hz/μe and strain resolution of 0. 045 μe in a 10 kHz bandwidth. As such, this balanced-mass double-ended tuning fork can be used to create a variety of different sensors including strain gauges, accelerometers, gyroscopes, and pressure transducers. Given the adaptable fabrication process flow, this device could be useful to micro-electro-mechanical systems (MEMS) designers creating sensors for a variety of different applications.

  12. Human ribonuclease H1 resolves R-loops and thereby enables progression of the DNA replication fork.

    Science.gov (United States)

    Parajuli, Shankar; Teasley, Daniel C; Murali, Bhavna; Jackson, Jessica; Vindigni, Alessandro; Stewart, Sheila A

    2017-09-15

    Faithful DNA replication is essential for genome stability. To ensure accurate replication, numerous complex and redundant replication and repair mechanisms function in tandem with the core replication proteins to ensure DNA replication continues even when replication challenges are present that could impede progression of the replication fork. A unique topological challenge to the replication machinery is posed by RNA-DNA hybrids, commonly referred to as R-loops. Although R-loops play important roles in gene expression and recombination at immunoglobulin sites, their persistence is thought to interfere with DNA replication by slowing or impeding replication fork progression. Therefore, it is of interest to identify DNA-associated enzymes that help resolve replication-impeding R-loops. Here, using DNA fiber analysis, we demonstrate that human ribonuclease H1 (RNH1) plays an important role in replication fork movement in the mammalian nucleus by resolving R-loops. We found that RNH1 depletion results in accumulation of RNA-DNA hybrids, slowing of replication forks, and increased DNA damage. Our data uncovered a role for RNH1 in global DNA replication in the mammalian nucleus. Because accumulation of RNA-DNA hybrids is linked to various human cancers and neurodegenerative disorders, our study raises the possibility that replication fork progression might be impeded, adding to increased genomic instability and contributing to disease. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  13. EVALUATION AND IDENTIFICATION OF WALNUT HEARTWOOD EXTRACTIVES FOR PROTECTION OF POPLAR WOOD

    Directory of Open Access Journals (Sweden)

    Seyyed Khalil Hosseini Hashemi

    2011-02-01

    Full Text Available Walnut (Juglans regia L. heartwood extractives were identified and their potential for protection of poplar wood was evaluated. Test specimens were prepared from poplar wood (Populus nigra L. to meet BS 838:1961 requirements. Samples were impregnated with heartwood extractive solution (1.5, 2.5, and 3.5% w/w in ethanol-toluene, followed by 5 hours vacuum desiccator technique to reach complete saturation. Impregnated specimens were exposed to white-rot fungus (Trametes versicolor for 14 weeks according to BS 838:1961 applying the kolle-flask method. The weight loss of samples was determined after exposure to white-rot fungus. The highest weight loss (36.96% was observed for untreated control samples and the lowest weight loss (30.40% was measured in samples treated with 1.5% extractives solution. The analyses of the extracts using GC/MS indicated that major constituents are benzoic acid,3,4,5-tri(hydroxyl and gallic acid (44.57 %. The two toxic components in the heartwood are juglone (5.15 % and 2,7-dimethylphenantheren (5.81 %.

  14. A model of supplying poplar wood for Iranian paper & wood factories

    Institute of Scientific and Technical Information of China (English)

    Majid Azizi

    2008-01-01

    The objective of this research is to design a method for an appropriate alternative to supply poplar wood as raw material for wood and paper factories in Iran.Due to the destruction of the forests and lack of proper plantation,replacement of the forest wood by the fast growing wood is vital to satisfy all requirements of these factories.A hierarchy was used to prioritize benefits,opportunities,costs and risks (BOCR) using the Analytic Hierarchy Process (AHP) ratings approach.To evaluate the "control criteria" of the system,a control hierarchy was also created and prioritized by applying the Analytic Network Process (ANP).A total of four major control criteria in the system are prioritized where each one controls a network structure evaluated by using ANP.The final synthesis results of the system showed that internal poplar tree farming supplied by the forest product factories was the best choice among three potential alternatives (factory procurement,external procurement and mix procurement).

  15. Mycorrhizal Fungal Community of Poplars Growing on Pyrite Tailings Contaminated Site near the River Timok

    Directory of Open Access Journals (Sweden)

    Marina Katanić

    2015-06-01

    Full Text Available Background and Purpose: Mycorrhizal fungi are of high importance for functioning of forest ecosystems and they could be used as indicators of environmental stress. The aim of this research was to analyze ectomycorrhizal community structure and to determine root colonization rate with ectomycorrhizal, arbuscular mycorrhizal and endophytic fungi of poplars growing on pyrite tailings contaminated site near the river Timok (Eastern Serbia. Materials and Methods: Identification of ectomycorrhizal types was performed by combining morphological and anatomical characterization of ectomycorrhizae with molecular identification approach, based on sequencing of the nuclear ITS rRNA region. Also, colonization of poplar roots with ectomycorrhizal, arbuscular mycorrhizal and dark septated endophytic fungi were analysed with intersection method. Results and Conclusions: Physico-chemical analyses of soil from studied site showed unfavourable water properties of soil, relatively low pH and high content of heavy metals (copper and zinc. In investigated samples only four different ectomycorrhizal fungi were found. To the species level were identified Thelephora terrestris and Tomentella ellisi, while two types remained unidentified. Type Thelephora terrestris made up 89% of all ectomycorrhizal roots on studied site. Consequently total values of Species richness index and Shannon-Weaver diversity index were 0.80 and 0.43, respectively. No structures of arbuscular mycorrhizal fungi were recorded. Unfavourable environmental conditions prevailing on investigated site caused decrease of ectomycorrhizal types diversity. Our findings point out that mycorrhyzal fungal community could be used as an appropriate indicator of environmental changes.

  16. Insect-resistant mechanism of transgenic triploid of Chinese white poplar

    Institute of Scientific and Technical Information of China (English)

    Yuan Shengliang; Gao Baojia; Zhang Na

    2006-01-01

    The activities of antidotal enzymes and digestive enzymes of Clostera anachoreta (Fabricius) instar larvae,feeding on leaves of three kinds of insect-resistant clones of transgenic triploid of Chinese white poplar,after 4,12,24,48,72 and 96 h,were investigated.The results showed that,feeding on clone 7,the activity of esterase,carboxylesterase,and mixed-function oxidases in the midgut of the larvae was very much decreased.Feeding on clone 10,those results were less than those of clone 7 and there were few changes on the larvae,which fed on clone 26.The changes of the amylase in the midgut of larvae were the same as those described above.However,the activities of glutathione S-transferase and proteinase were complex,increased markedly after 24 h feeding on clone 7,and then declined rapidly.The same changes were taking place on the larvae feeding on clone 10.There were many slight changes in glutathione S-transferase of the larvae,feeding on clone 26;no changes occurred in the proteinases of the midgut.Thus,the antidotal enzymes and digestive enzymes in the midgut of the larvae were inhibited.This may be the main mechanism of the transgenic triploid of Chinese white poplar.

  17. Effect of Thermal Treatment of Veneer on Formaldehyde Emission of Poplar Plywood

    Directory of Open Access Journals (Sweden)

    Takato Nakano

    2013-01-01

    Full Text Available A large amount of poplar plywood is now being imported into Japan from China, and as a result, formaldehyde emitted from this plywood represents an undesirable chemical that must be controlled using a chemical catching agent. The aim of this study is to find an approach to reduce the formaldehyde emission of poplar plywood using thermal treatment without employing any chemicals. The experimental results obtained show that heating veneer sheets in the temperature range of 150 °C to 170 °C effectively reduced the formaldehyde emission of plywood, without diminishing the mechanical properties of the veneer. By applying Langmuir’s theory and Hailwood-Horrobin theory to the adsorption isotherm obtained in this study, the relationship between the formaldehyde emission of plywood and the adsorption properties of veneer as a material is discussed. When veneer sheets were heated in the temperature range of 150 °C to 170 °C, the amount of hydrated water (monomolecular layer decreased slightly and that of dissolved water (polymolecular layer did not change. It is hypothesized that the formaldehyde emission of plywood is related to the condition of the adsorption site of the wood.

  18. Chemical Profiles of Wood Components of Poplar Clones for Their Energy Utilization

    Directory of Open Access Journals (Sweden)

    Danica Kačíková

    2012-12-01

    Full Text Available Selected and tested poplar clones are very suitable biomass resources for various applications such as biofuels, the pulp and paper industry as well as chemicals production. In this study, we determined the content of lignin, cellulose, holocellulose, and extractives, syringyl to guaiacyl (S/G ratio in lignin, and also calculated higher heating values (HHV among eight examined clones of Populus grown on three different experimental sites. The highest lignin content for all the examined sites was determined in ‘I-214’ and ‘Baka 5’ clones, whereas the highest content of extractives was found in ‘Villafranca’ and ‘Baka 5’ clones. The highest S/G ratio for all the examined sites was determined in ‘Villafranca’ and ‘Agathe F’ clones. The chemical profiles of main wood components, extractives, and the S/G ratio in lignin were also influenced by both the experimental site and the clone × site interaction. Higher heating values, derived from calculations based on the contents of lignin and extractives (or lignin only, were in close agreement with the previously published data. The highest heating values were found for ‘Baka 5’ and ‘I-214’ clones. The optimal method of poplar biomass utilization can be chosen on basis of the lignocellulosics chemical composition and the S/G ratio in lignin.

  19. S-nitroso-proteome in poplar leaves in response to acute ozone stress.

    Directory of Open Access Journals (Sweden)

    Elisa Vanzo

    Full Text Available Protein S-nitrosylation, the covalent binding of nitric oxide (NO to protein cysteine residues, is one of the main mechanisms of NO signaling in plant and animal cells. Using a combination of the biotin switch assay and label-free LC-MS/MS analysis, we revealed the S-nitroso-proteome of the woody model plant Populus x canescens. Under normal conditions, constitutively S-nitrosylated proteins in poplar leaves and calli comprise all aspects of primary and secondary metabolism. Acute ozone fumigation was applied to elicit ROS-mediated changes of the S-nitroso-proteome. This treatment changed the total nitrite and nitrosothiol contents of poplar leaves and affected the homeostasis of 32 S-nitrosylated proteins. Multivariate data analysis revealed that ozone exposure negatively affected the S-nitrosylation status of leaf proteins: 23 proteins were de-nitrosylated and 9 proteins had increased S-nitrosylation content compared to the control. Phenylalanine ammonia-lyase 2 (log2[ozone/control] = -3.6 and caffeic acid O-methyltransferase (-3.4, key enzymes catalyzing important steps in the phenylpropanoid and subsequent lignin biosynthetic pathways, respectively, were de-nitrosylated upon ozone stress. Measuring the in vivo and in vitro phenylalanine ammonia-lyase activity indicated that the increase of the phenylalanine ammonia-lyase activity in response to acute ozone is partly regulated by de-nitrosylation, which might favor a higher metabolic flux through the phenylpropanoid pathway within minutes after ozone exposure.

  20. Drought-induced xylem pit membrane damage in aspen and balsam poplar.

    Science.gov (United States)

    Hillabrand, Rachel M; Hacke, Uwe G; Lieffers, Victor J

    2016-10-01

    Drought induces an increase in a tree's vulnerability to a loss of its hydraulic conductivity in many tree species, including two common in western Canada, trembling aspen (Populus tremuloides) and balsam poplar (Populus balsamifera). Termed 'cavitation fatigue' or 'air-seeding fatigue', the mechanism of this phenomenon is not well understood, but hypothesized to be a result of damage to xylem pit membranes. To examine the validity of this hypothesis, the effect of drought on the porosity of pit membranes in aspen and balsam poplar was investigated. Controlled drought and bench dehydration treatments were used to induce fatigue and scanning electron microscopy (SEM) was used to image pit membranes for relative porosity evaluations from air-dried samples after ethanol dehydration. A significant increase in the diameter of the largest pore was found in the drought and dehydration treatments of aspen, while an increase in the percentage of porous pit membranes was found in the dehydration treatments of both species. Additionally, the location of the largest pore per pit membrane was observed to tend toward the periphery of the membrane.

  1. Estimation of the yield of poplars in plantations of fast-growing species within current results

    Directory of Open Access Journals (Sweden)

    Martin Fajman

    2009-01-01

    Full Text Available Current results are presented of allometric yield estimates of the poplar short rotation coppice. According to a literature review it is obvious that yield estimates, based on measurable quantities of a growing stand, depend not only on the selected tree specie or its clone, but also on the site location. The Jap-105 poplar clone (P. nigra x P. maximowiczii allometric relations were analyzed by regression methods aimed at the creation of the yield estimation methodology at a testing site in Domanínek. Altogether, the twelve polynomial dependences of particular measured quantities approved the high empirical data conformity with the tested regression model (correlation index from 0.9033 to 0.9967. Within the forward stepwise regression, factors were selected, which explain best examined estimates of the total biomass DM; i.e. d.b.h. and stem height. Furthermore, the KESTEMONT’s (1971 mo­del was verified with a satisfying conformity as well. Approving presented yield estimation methods, the presented models will be checked in a large-scale field trial.

  2. Computer Simulation of Fiber Length and Width Distribution for Two Poplar Woods

    Institute of Scientific and Technical Information of China (English)

    ZHANGDongmei; HOUZhuqiang; GUANNing

    2004-01-01

    Computer simulation was carried out on fiber length and width for plantation-grown Chinese white poplar (Populus tomentosa Cart. clone) and plantation-grown poplar 1-72 (P. x eurumericana (Dode) Guiner cv.). Skewness and kurtosis of measured results exhibited that distributions of the fiber length and width departured from normal distribution. Three-parameter Weibull density function was used in this investigation and the corresponding program was written with Turbo C. The results showed that profiles of simulated length and width histograms were similar to ones of measured histograms, and that there was a pretty good agreement between simulated and measured means of fiber length and width. There was a little influence on the simulated means from seed used in random number generator and number of simulated variables. That indicated that the simulation was steady when the seed and the number were altered. Different histograms can be obtained with different values of the location, the shape, and the scale parameter corresponding to different values of the minimum, the mean, and the standard deviation for fiber length and width. The simulation presented here can be used as a tool for the studies on the variations in fiber morphology.

  3. Tulip-poplar leaf diffusion resistance calculated from stomatal dimensions and varying environmental parameters

    Energy Technology Data Exchange (ETDEWEB)

    McConathy, R.K.

    1983-03-01

    The study describes the gradients of stomatal size and density in the crown of a mature forest-grown tulip-poplar (Liriodendron tulipifera L.) in eastern Tennessee. These data are used to predict leaf resistance to vapor diffusion in relation to stomatal width and boundary layer resistance. Stomatal density on individual leaves did not vary, but density increased with increasing crown height. Stomatal size decreased with increasing height of leaves within the crown. Stomatal size and density variations interacted to result in a constant number of stomata per leaf at all crown heights. Stomatal diffusive resistance values calculated from stomatal measurements and varying environmental parameters indicated that stomatal resistance controlled transpiration water losses only at small apertures (<0.6 ..mu..m). Boundary layer resistance was controlling at large stomatal apertures (>0.6 ..mu..m) and at low wind speeds (approx.100 cm/s). Under normal forest conditions tulip-poplar stomatal resistance exercised more control over transpiration than did boundary layer resistance.

  4. Nonmicrobial aerobic methane emission from poplar shoot cultures under low-light conditions.

    Science.gov (United States)

    Brüggemann, Nicolas; Meier, Rudolf; Steigner, Dominik; Zimmer, Ina; Louis, Sandrine; Schnitzler, Jörg-Peter

    2009-06-01

    The aerobic formation of methane in plants has been reported previously, but has been questioned by a number of researchers. Recently, isotopic evidence demonstrated that ultraviolet irradiation and heating lead to photochemical or thermal aerobic methane formation mainly from plant pectin in the absence of microbial methane production. However, the origin of aerobic methane formation from plant material observed under low temperature and low-light/dark conditions is still unclear. Here we show that Grey poplar (Populus × canescens, syn. Populus tremula × Populus alba) plants derived from cell cultures under sterile conditions released 13C-labeled methane under low-light conditions after feeding the plants with 13CO2. Molecular biological analysis proved the absence of any microbial contamination with known methanogenic microorganisms and ruled out the possibility that methane emission from our poplar shoot cultures under aerobic low-light/dark and ambient temperature conditions could be of microbial origin. The CH4 release rates in our experiment were in the range of 0.16-0.7 ng g-1 DW h-1, adding evidence to the growing opinion that the quantitative role of aerobic methane emissions from plants in the global methane budget, at least from cold temperate or boreal regions, is only of minor importance.

  5. Physical and chemical characteristics of products from the torrefaction of yellow poplar (Liriodendron tulipifera).

    Science.gov (United States)

    Kim, Young-Hun; Lee, Soo-Min; Lee, Hyoung-Woo; Lee, Jae-Won

    2012-07-01

    We investigated the characteristics of torrefied yellow poplar (Liriodendron tulipifera) depending on reaction time (30 min) and temperature (240-280 °C). The thermogravimetric, grindability and calorific value of torrefied biomass were analyzed. As the torrefaction temperature increased, the carbon content of torrefied biomass increased from 49.50% to 54.42%, while the hydrogen and oxygen contents decreased from 6.09% to 5.65% and 28.71% to 26.61%, respectively. The highest calorific value was 1233 kJ/kg when torrefaction was performed at 280 °C for 30 min. An overall increase in energy density and decrease in mass and energy yield was observed with the increase in torrefaction temperature. The analysis of thermal decomposition demonstrated that the hemicelluloses contained in torrefied biomass decreased with increasing torrefaction temperature, whereas cellulose and lignin were only slightly affected. The grindability of torrefied biomass was significantly improved when torrefaction was performed at high temperature. Torrefaction of yellow poplar improved the chemical and physical fuel properties of the biomass.

  6. Genome-Wide Identification and in Silico Analysis of Poplar Peptide Deformylases

    Directory of Open Access Journals (Sweden)

    Chuan-Ping Yang

    2012-04-01

    Full Text Available Peptide deformylases (PDF behave as monomeric metal cation hydrolases for the removal of the N-formyl group (Fo. This is an essential step in the N-terminal Met excision (NME that occurs in these proteins from eukaryotic mitochondria or chloroplasts. Although PDFs have been identified and their structure and function have been characterized in several herbaceous species, it remains as yet unexplored in poplar. Here, we report on the first identification of two genes (PtrPDF1A and PtrPDF1B respectively encoding two putative PDF polypeptides in Populus trichocarpa by genome-wide investigation. One of them (XP_002300047.1 encoded by PtrPDF1B (XM_002300011.1 was truncated, and then revised into a complete sequence based on its ESTs support with high confidence. We document that the two PDF1s of Populus are evolutionarily divergent, likely as a result of independent duplicated events. Furthermore, in silico simulations demonstrated that PtrPDF1A and PtrPDF1B should act as similar PDF catalytic activities to their corresponding PDF orthologs in Arabidopsis. This result would be value of for further assessment of their biological activities in poplar, and further experiments are now required to confirm them.

  7. SUITABILITY OF THREE HYBRID POPLAR CLONES FOR LAMINATED VENEER LUMBER MANUFACTURING USING MELAMINE UREA FORMALDEHYDE ADHESIVE

    Directory of Open Access Journals (Sweden)

    Ramazan Kurt

    2010-07-01

    Full Text Available Experimental laminated veneer lumbers (LVLs from rotary peeled I-214 (Populus x Euramericana and two Populus deltoides I-77/51 and S.307-26 fast growing hybrid poplar clones were manufactured with a melamine urea formaldehyde (MUF adhesive successfully. Two Populus deltoides clones that are grown in Turkey were used for the first time in LVLs manufacturing. The results showed that clone types affected physical and mechanical properties of LVLs. Populus deltoides clones had better physical and mechanical properties compared to Populus x Euramericana clone due to their higher density and fiber length values. S.307-26 clone had the highest and I-214 had the lowest properties among three hybrid poplar clones. The physical and mechanical properties of LVLs were higher than those of solid woods. This increase may be due to compaction factor (densification, manufacturing techniques, and the use of adhesives. The degree of contribution of solid wood properties to the LVLs’ properties was explained by using a contribution factor. Two Populus deltoides clones were found to be more suitable for LVLs manufacturing compared to Populus x Euramericana clone.

  8. Herbivore-induced volatile emission in black poplar: regulation and role in attracting herbivore enemies.

    Science.gov (United States)

    Clavijo McCormick, Andrea; Irmisch, Sandra; Reinecke, Andreas; Boeckler, G Andreas; Veit, Daniel; Reichelt, Michael; Hansson, Bill S; Gershenzon, Jonathan; Köllner, Tobias G; Unsicker, Sybille B

    2014-08-01

    After herbivory, plants release volatile organic compounds from damaged foliage as well as from nearby undamaged leaves that attract herbivore enemies. Little is known about what controls the volatile emission differences between damaged and undamaged tissues and how these affect the orientation of herbivore enemies. We investigated volatile emission from damaged and adjacent undamaged foliage of black poplar (Populus nigra) after herbivory by gypsy moth (Lymantria dispar) caterpillars and determined the compounds mediating the attraction of the gypsy moth parasitoid Glyptapanteles liparidis (Braconidae). Female parasitoids were more attracted to gypsy moth-damaged leaves than to adjacent non-damaged leaves. The most characteristic volatiles of damaged versus neighbouring undamaged leaves included terpenes, green leaf volatiles and nitrogen-containing compounds, such as aldoximes and nitriles. Electrophysiological recordings and olfactometer bioassays demonstrated the importance of nitrogenous volatiles. Under field conditions, parasitic Hymenoptera were more attracted to traps baited with these substances than most other compounds. The differences in volatile emission profiles between damaged and undamaged foliage appear to be regulated by jasmonate signalling and the local activation of volatile biosynthesis. We conclude that characteristic volatiles from damaged black poplar foliage are essential cues enabling parasitoids to find their hosts.

  9. Effects of poplar buds as an alternative to propolis on postharvest diseases control of strawberry fruits.

    Science.gov (United States)

    Yang, Shuzhen; Zhou, Yefeng; Ye, Junli; Fan, Gang; Peng, Litao; Pan, Siyi

    2016-04-01

    Botrytis cinerea and Rhizopus stolonifer, two main postharvest pathogens, cause great loss of strawberry fruits. Here, the effects of poplar buds extracts, a main plant source for Chinese propolis, on disease control were investigated in vitro and in vivo. The HPLC profile of poplar buds ethanol extract (PBEE) was almost identical to that of propolis ethanol extract (PEE), with the active flavonoids identified as pinocembrin, chrysin and galangin. PBEE exhibited similar inhibitory activities on spore germination of both pathogens compared with PEE, and PBEE also strongly inhibited the mycelial growth of the pathogens. In vivo, PBEE could effectively reduce decay of strawberry fruits stored at 13 °C. Although the weight loss was slightly increased, the contents of total soluble solid, titritable acid, vitamin C and total anthocyanins were significantly higher in PBEE treated fruits than those of the control. PBEE had the similar antifungal activity with propolis and had great potential as an alternative to propolis to control strawberry fruits diseases. © 2015 Society of Chemical Industry.

  10. Superior supercapacitive performance of hollow activated carbon nanomesh with hierarchical structure derived from poplar catkins

    Science.gov (United States)

    Su, Xiao-Li; Cheng, Ming-Yu; Fu, Lin; Yang, Jing-He; Zheng, Xiu-Cheng; Guan, Xin-Xin

    2017-09-01

    The hollow activated carbon nanomesh (PCACM) with a hierarchical porous structure is derived from biowaste-poplar catkins by in-situ calcination etching with Ni(NO3)2·6H2O and KOH in N2 flow combined with an acid dissolution technique. This procedure not only inherits the natural tube morphology of poplar catkins, but also generates a fascinating nanomesh structure on the walls. PCACM possesses a large specific surface area (SBET = 1893.0 m2 g-1) and high total pore volume (Vp = 1.495 cm3 g-1), and displays an exciting meso-macoporous structure with a concentrated pore size distribution of 4.53 nm. The specific capacitance of PCACM is as high as 314.6 F g-1 at 1.0 A g-1 when used as the electrode materials for supercapacitor. Furthermore, the symmetric supercapacitor of PCACM with 1.0 M Na2SO4 solution as the electrolyte displays a high energy density of 20.86 Wh kg-1 at a power density of 180.13 W kg-1 within a wide voltage rage of 0-1.8 V, which is comparable or even obviously higher than those of other biomass derived carbon reported. It is noteworthy that PCACM also exhibits superior cycling stability and coulombic efficiency. The excellent electrochemical behaviors enable PCACM to be a promising electrode material for supercapacitors.

  11. Anaerobic digestion of poplar processing residues for methane production after alkaline treatment.

    Science.gov (United States)

    Yao, Yiqing; He, Mulan; Ren, Yubing; Ma, Liying; Luo, Yang; Sheng, Hongmei; Xiang, Yun; Zhang, Hua; Li, Qien; An, Lizhe

    2013-04-01

    Poplar processing residues were used for methane production by anaerobic digestion after alkaline treatment and methane production was measured. The highest methane production of 271.9 L/kg volatile solid (VS) was obtained at conditions of 35 g/L and 5.0% NaOH, which was 113.8% higher than non-alkaline treated samples, and 28.9% higher than that of corn straw, which is the conventional anaerobic digestion material in China. The maximal enhancement of 275.5% obtained at conditions of 50 g/L and 7.0% NaOH. Degradation of cellulose, hemicellulose and lignin after treatment increased by 4.0-9.0%, 3.3-6.2%, and 11.1-20.5%, respectively, with NaOH dose ranged from 3.0% to 7.0%. Scanning electron microscopy (SEM), FTIR spectra and Crystallinity measurements showed that the lignocellulosic structures were disrupted by NaOH. The results indicate poplar processing residues might be an efficient substrate for methane production after alkaline treatment.

  12. Effects of apical meristem loss on sylleptic branching and growth of hybrid poplar

    Energy Technology Data Exchange (ETDEWEB)

    Zeleznik, Joseph D. [North Dakota State University, Fargo, ND (United States). Plant Sciences Department

    2007-07-15

    The effects of apical meristem loss on the growth and development of hybrid poplar trees was investigated. This was done by clipping back either the apical meristem alone (dividing cells), or the apical meristem plus a small amount of additional stem tissue (expanding cells, <1 cm), at various times during the first growing season. Two clones (NM6-nonsylleptic habit, and DN34-slightly sylleptic habit) were tested at close spacing (0.6 m) in the nursery. Clipping generally increased the number of sylleptic branches formed. Clipping 69 days after planting resulted in the largest number of sylleptic branches while clipping 4 weeks later gave no increase in syllepsis. Clipping temporarily reduced height growth of both clones but total height at the end of the first growing season was not affected by any treatment. There were some slight differences in growth during the second growing season; despite these differences, total stem biomass and total tree biomass after 2 years were not affected by temporary loss of the apical meristem in the first growing season. Results suggest that death or removal of hybrid poplar apical meristems by tip borers or ungulates has no long-term effects on aboveground growth as measured by height or biomass. (author)

  13. Assessment of the effect of quality factors on the assortment structure in poplar plantations

    Directory of Open Access Journals (Sweden)

    Danilović Milorad

    2008-01-01

    Full Text Available Quality factors affecting the assortment quality structure in poplar plantations were researched on nine temporary sample plots in the period 1997-2004, from the aspect of the implementation of roundwood standards. Sample plots were selected depending on the factors, the effect of which was studied. The following factors were researched: clonal species, planting pattern, flood risk, pruning of branches, plantation position and age. The study was performed by the original methodology. Based on the study results, it is concluded that knots have the highest effect on the assortment quality structure in poplar plantations, regardless of the site and stand conditions. Their effect rises significantly with the increase of tree diameter. Also, the analyses show that the number of large and rotten knots on the tree trunk increases considerably with the older age. In the flooded area, the sweep of the lower part of the stem is more intensive and multiple curvatures are frequent on the trees growing immediately along the river, whereas curvature decreases with the distance from the river bank. Based on the study results, it is concluded that the percentage of best quality assortments is considerably reduced by the above wood defects.

  14. Non-destructive Analysis Chlorophyll Content of Different Genotypes of Poplars Based on Hyperspectral Reflectance Data

    Science.gov (United States)

    Jin, S.; Dian, Y.; Wang, R.; Peng, L.; Liu, X.; Zhou, Z.; Zhong, S.; Wang, Y.

    2016-11-01

    Leaf Chlorophyll content (Ct) indicates plant physiological status and can be detected by hyperspectral measurements. However, it is difficult to conclude that different genotypes of same species have the same relationship with the hyperspectral data. The aim of this paper was to test that whether the different genotypes of same species have the similar relationship with hyperspectral reflectance. First of all, spectral reflectance of populus simonii (Populus simonii Carr) and I-72 poplar (Populus euramericana cv. ‘San Martino I-72/58’) were collected by spectrometric meter, and then extract chlorophyll index (CI) and other 11 types of vegetation indices from the hyperspectral reflectance data. At last, relationships between different vegetation indices and Ct of the two genotypes of poplar were compared. Results show that (1) the relationships between SPAD value and Ct are different in the low and high Ct level, we can choose proper vegetation index, REPIG, mSR705 and SDr/SDb et al to predict the Ct value. (2) Meanwhile, we can use PSSRb and PRI to distinguish fine difference between different genotypes.

  15. Interaction of drought and ozone exposure on isoprene emission from extensively cultivated poplar.

    Science.gov (United States)

    Yuan, Xiangyang; Calatayud, Vicent; Gao, Feng; Fares, Silvano; Paoletti, Elena; Tian, Yuan; Feng, Zhaozhong

    2016-10-01

    The combined effects of ozone (O3 ) and drought on isoprene emission were studied for the first time. Young hybrid poplars (clone 546, Populus deltoides cv. 55/56 x P. deltoides cv. Imperial) were exposed to O3 (charcoal-filtered air, CF, and non-filtered air +40 ppb, E-O3 ) and soil water stress (well-watered, WW, and mild drought, MD, one-third irrigation) for 96 days. Consistent with light-saturated photosynthesis (Asat ), intercellular CO2 concentration (Ci ) and chlorophyll content, isoprene emission depended on drought, O3 , leaf position and sampling time. Drought stimulated emission (+38.4%), and O3 decreased it (-40.4%). Ozone increased the carbon cost per unit of isoprene emission. Ozone and drought effects were stronger in middle leaves (13th-15th from the apex) than in upper leaves (6th-8th). Only Asat showed a significant interaction between O3 and drought. When the responses were up-scaled to the entire-plant level, however, drought effects on total leaf area translated into around twice higher emission from WW plants in clean air than in E-O3 . Our results suggest that direct effects on plant emission rates and changes in total leaf area may affect isoprene emission from intensively cultivated hybrid poplar under combined MD and O3 exposure, with important feedbacks for air quality.

  16. Research on Poplar Leaf Rust%杨树叶锈病研究

    Institute of Scientific and Technical Information of China (English)

    肖婷; 邝海菊; 何香; 兰晓君; 艾尔肯·热合曼; 古丽斯玛依·艾拜都拉

    2009-01-01

    Leaf rust caused by Melampsora larici-populina was the most widespread and serious disease of poplars,led to timber volume loss and wood quality reduction,and badly restricted the development of commodity and ecology forest.Researching on Melampsora larici-populina was introduced in this paper from aspects of distribution and host varieties of plant pathogenic fungi,physiological differentiation,host poplar resistance and molecular markers,control measures and so on.%松杨栅锈菌(Melampsora larici-populina)导致的杨树叶锈病是杨树病害中分布最广、危害最大的一种病害,它造成杨树林的材积损失和材质下降,严重制约着杨树商品林和生态林的发展.该文从病原菌的分布和寄主种类、病原菌生理分化、寄主抗锈性及分子标记、防治措施等几方面介绍了杨树叶锈病的研究.

  17. Phytoscreening and phytoextraction of heavy metals at Danish polluted sites using willow and poplar trees.

    Science.gov (United States)

    Algreen, Mette; Trapp, Stefan; Rein, Arno

    2014-01-01

    The main purpose of this study was to determine typical concentrations of heavy metals (HM) in wood from willows and poplars, in order to test the feasibility of phytoscreening and phytoextraction of HM. Samples were taken from one strongly, one moderately, and one slightly polluted site and from three reference sites. Wood from both tree species had similar background concentrations at 0.5 mg kg(-1) for cadmium (Cd), 1.6 mg kg(-1) for copper (Cu), 0.3 mg kg(-1) for nickel (Ni), and 25 mg kg(-1) for zinc (Zn). Concentrations of chromium (Cr) and lead (Pb) were below or close to detection limit. Concentrations in wood from the highly polluted site were significantly elevated, compared to references, in particular for willow. The conclusion from these results is that tree coring could be used successfully to identify strongly heavy metal-polluted soil for Cd, Cu, Ni, Zn, and that willow trees were superior to poplars, except when screening for Ni. Phytoextraction of HMs was quantified from measured concentration in wood at the most polluted site. Extraction efficiencies were best for willows and Cd, but below 0.5% over 10 years, and below 1‰ in 10 years for all other HMs.

  18. Variation of microfibril angle and its correlation to wood properties in poplars

    Institute of Scientific and Technical Information of China (English)

    FANGSheng-zuo; YANGWen-zhong; FUXiang-xiang

    2004-01-01

    The microfibril angle of seven poplar clones was determined by using X-ray diffraction technique. Microfibril angle,wood basic density, fiber length, fiber width and cellulose content were assessed for every growth ring at breast height for all sample trees. Significant variation in microfibril angle was observed among growth rings. Mean microfibril angle (MFA) at breast height varied from 7.8°to 28° between growth rings with cambial age and showed a consistent pith-to-bark trend of decline angles. Analysis of variance also indicated that there were significant differences in wood basic density, fiber length, fiber width and cellulose content between the growth rings, which had an increasing tendency from pith to bark. Correlations between MFA and examined wood properties were predominantly large and significant negative (α=0.01), and the coefficients were -0.660 for cellulose content, -0.586 for fiber length, -0.516 for fiber width and -0.450 for wood basic density, respectively. Regression analysis with linear and curve estimation indicated that a quadratic function showed the largest R2 and the least standard error for describing the relationships between microfibril angle and measured wood properties, and the correlation coefficients were over -0.45 (n=125). The results from this study suggested that microfibril angle would be a good characteristic for improvement in the future breeding program of poplars.

  19. Interclonal and within-tree variation in wood properties of poplar clones

    Institute of Scientific and Technical Information of China (English)

    FANGSheng-zuo; YANGWen-zhong

    2003-01-01

    The wood basic density, cellulose content and fiber form were investigated for all sample trees at breast height (1.3m) in seven poplar clones, and at 0 (butt), 5.6, 9.6, 13.6, 17.6, 19.6 and 21.6 m for clone Nanlin-95 and Nanlin-895, respectively,for providing information on variation patterns of wood density, fiber characteristics and holocellulose content within trees and among clones. The results showed that significant variations about wood density, cellulose content, fiber diameter and the ratio of fiber length to diameter existed among poplar clones examined. Variance analysis indicated that there were significant differences in wood basic density, fiber length, fiber diameter and cellulose content among the growth rings, which had an increasing tendency along the direction from pith to bark. The significant differences also existed in wood basic density, fiber length and fiber diameter at different tree height. The mean wood basic density had a general increase trend with increasing height of trees and the lowest was found at the base, while fiber length and fiber diameter had a general decline pattern with increasing height of trees and the biggest value was observed at the height of 5.6 m. Regression analysis indicated that the relationship between examined wood properties and growth ring number (cambial age), and the relationship between examined wood properties and tree height can be described by polynomial functions.

  20. Immunolocalization of phenylalanine ammonia-lyase and cinnamate-4-hydroxylase in differentiating xylem of poplar.

    Science.gov (United States)

    Sato, Takahiko; Takabe, Keiji; Fujita, Minoru

    2004-01-01

    Phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) and cinnamate-4-hydroxylase (C4H; EC 1.14.13.11) are pivotal enzymes involved in lignification. We synthesized peptides as the epitopes according to the amino acid sequences of these enzymes, coupled them with hemocyanin, and injected them into mice. The antiserums against peptides of PAL and C4H specifically detected PAL and C4H in the crude enzymes extracted from differentiating xylem of poplar, respectively. PAL and C4H were localized in differentiating xylem of poplar. PAL labeling was mainly localized in the cytosol, and somewhat localized on the rough-endoplasmic reticulum (r-ER) and the Golgi apparatus. In contrast, C4H was mainly observed on r-ER and the Golgi apparatus. These findings suggest that conversion of phenylalanine to cinnamic acid occurs in the cytosol and the following reaction occurs near the membrane of r-ER and the Golgi apparatus. The possibility of coordinated localization of PAL and C4H is discussed.