Faraday's first dynamo: A retrospective

Science.gov (United States)

Smith, Glenn S.

2013-12-01

In the early 1830s, Michael Faraday performed his seminal experimental research on electromagnetic induction, in which he created the first electric dynamo—a machine for continuously converting rotational mechanical energy into electrical energy. His machine was a conducting disc, rotating between the poles of a permanent magnet, with the voltage/current obtained from brushes contacting the disc. In his first dynamo, the magnetic field was asymmetric with respect to the axis of the disc. This is to be contrasted with some of his later symmetric designs, which are the ones almost invariably discussed in textbooks on electromagnetism. In this paper, a theoretical analysis is developed for Faraday's first dynamo. From this analysis, the eddy currents in the disc and the open-circuit voltage for arbitrary positioning of the brushes are determined. The approximate analysis is verified by comparing theoretical results with measurements made on an experimental recreation of the dynamo. Quantitative results from the analysis are used to elucidate Faraday's qualitative observations, from which he learned so much about electromagnetic induction. For the asymmetric design, the eddy currents in the disc dissipate energy that makes the dynamo inefficient, prohibiting its use as a practical generator of electric power. Faraday's experiments with his first dynamo provided valuable insight into electromagnetic induction, and this insight was quickly used by others to design practical generators.

The Global Solar Dynamo

Science.gov (United States)

Cameron, R. H.; Dikpati, M.; Brandenburg, A.

2017-09-01

A brief summary of the various observations and constraints that underlie solar dynamo research are presented. The arguments that indicate that the solar dynamo is an alpha-omega dynamo of the Babcock-Leighton type are then shortly reviewed. The main open questions that remain are concerned with the subsurface dynamics, including why sunspots emerge at preferred latitudes as seen in the familiar butterfly wings, why the cycle is about 11 years long, and why the sunspot groups emerge tilted with respect to the equator (Joy's law). Next, we turn to magnetic helicity, whose conservation property has been identified with the decline of large-scale magnetic fields found in direct numerical simulations at large magnetic Reynolds numbers. However, magnetic helicity fluxes through the solar surface can alleviate this problem and connect theory with observations, as will be discussed.

Waldmeier's Rules in the Solar and Stellar Dynamos

Science.gov (United States)

Pipin, Valery; Kosovichev, Alexander

2015-08-01

The Waldmeier's rules [1] establish important empirical relations between the general parameters of magnetic cycles (such as the amplitude, period, growth rate and time profile) on the Sun and solar-type stars [2]. Variations of the magnetic cycle parameters depend on properties of the global dynamo processes operating in the stellar convection zones. We employ nonlinear mean-field axisymmetric dynamo models [3] and calculate of the magnetic cycle parameters, such as the dynamo cycle period, total magnetic and Poynting fluxes for the Sun and solar-type stars with rotational periods from 15 to 30 days. We consider two types of the dynamo models: 1) distributed (D-type) models employing the standard α - effect distributed in the whole convection zone, and 2) Babcock-Leighton (BL-type) models with a non-local α - effect. The dynamo models take into account the principal mechanisms of the nonlinear dynamo generation and saturation, including the magnetic helicity conservation, magnetic buoyancy effects, and the feedback on the angular momentum balance inside the convection zones. Both types of models show that the dynamo generated magnetic flux increases with the increase of the rotation rate. This corresponds to stronger brightness variations. The distributed dynamo model reproduces the observed dependence of the cycle period on the rotation rate for the Sun analogs better than the BL-type model. For the solar-type stars rotating more rapidly than the Sun we find dynamo regimes with multiple periods. Such stars with multiple cycles form a separate branch in the variability-rotation diagram.1. Waldmeier, M., Prognose für das nächste Sonnenfleckenmaximum, 1936, Astron. Nachrichten, 259,262. Soon,W.H., Baliunas,S.L., Zhang,Q.,An interpretation of cycle periods of stellar chromospheric activity, 1993, ApJ, 414,333. Pipin,V.V., Dependence of magnetic cycle parameters on period of rotation in nonlinear solar-type dynamos, 2015, astro-ph: 14125284

A study of the required Rayleigh number to sustain dynamo with various inner core radius

Science.gov (United States)

Nishida, Y.; Katoh, Y.; Matsui, H.; Kumamoto, A.

2017-12-01

It is widely accepted that the geomagnetic field is sustained by thermal and compositional driven convections of a liquid iron alloy in the outer core. The generation process of the geomagnetic field has been studied by a number of MHD dynamo simulations. Recent studies of the ratio of the Earth's core evolution suggest that the inner solid core radius ri to the outer liquid core radius ro changed from ri/ro = 0 to 0.35 during the last one billion years. There are some studies of dynamo in the early Earth with smaller inner core than the present. Heimpel et al. (2005) revealed the Rayleigh number Ra of the onset of dynamo process as a function of ri/ro from simulation, while paleomagnetic observation shows that the geomagnetic field has been sustained for 3.5 billion years. While Heimpel and Evans (2013) studied dynamo processes taking into account the thermal history of the Earth's interior, there were few cases corresponding to the early Earth. Driscoll (2016) performed a series of dynamo based on a thermal evolution model. Despite a number of dynamo simulations, dynamo process occurring in the interior of the early Earth has not been fully understood because the magnetic Prandtl numbers in these simulations are much larger than that for the actual outer core.In the present study, we performed thermally driven dynamo simulations with different aspect ratio ri/ro = 0.15, 0.25 and 0.35 to evaluate the critical Ra for the thermal convection and required Ra to maintain the dynamo. For this purpose, we performed simulations with various Ra and fixed the other control parameters such as the Ekman, Prandtl, and magnetic Prandtl numbers. For the initial condition and boundary conditions, we followed the dynamo benchmark case 1 by Christensen et al. (2001). The results show that the critical Ra increases with the smaller aspect ratio ri/ro. It is confirmed that larger amplitude of buoyancy is required in the smaller inner core to maintain dynamo.

Laminar and Turbulent Dynamos in Chiral Magnetohydrodynamics. II. Simulations

Science.gov (United States)

Schober, Jennifer; Rogachevskii, Igor; Brandenburg, Axel; Boyarsky, Alexey; Fröhlich, Jürg; Ruchayskiy, Oleg; Kleeorin, Nathan

2018-05-01

Using direct numerical simulations (DNS), we study laminar and turbulent dynamos in chiral magnetohydrodynamics with an extended set of equations that accounts for an additional contribution to the electric current due to the chiral magnetic effect (CME). This quantum phenomenon originates from an asymmetry between left- and right-handed relativistic fermions in the presence of a magnetic field and gives rise to a chiral dynamo. We show that the magnetic field evolution proceeds in three stages: (1) a small-scale chiral dynamo instability, (2) production of chiral magnetically driven turbulence and excitation of a large-scale dynamo instability due to a new chiral effect (α μ effect), and (3) saturation of magnetic helicity and magnetic field growth controlled by a conservation law for the total chirality. The α μ effect becomes dominant at large fluid and magnetic Reynolds numbers and is not related to kinetic helicity. The growth rate of the large-scale magnetic field and its characteristic scale measured in the numerical simulations agree well with theoretical predictions based on mean-field theory. The previously discussed two-stage chiral magnetic scenario did not include stage (2), during which the characteristic scale of magnetic field variations can increase by many orders of magnitude. Based on the findings from numerical simulations, the relevance of the CME and the chiral effects revealed in the relativistic plasma of the early universe and of proto-neutron stars are discussed.

Dynamo generated by the centrifugal instability

Science.gov (United States)

Marcotte, Florence; Gissinger, Christophe

2016-10-01

We present a scenario for magnetic field amplification where an electrically conducting fluid is confined in a differentially rotating, spherical shell with thin aspect ratio. When the angular momentum sufficiently decreases outwards, a hydrodynamic instability develops in the equatorial region, characterized by pairs of counter-rotating toroidal vortices similar to those observed in cylindrical Couette flow. These spherical Taylor-Couette vortices generate a subcritical dynamo magnetic field dominated by nonaxisymmetric components. We show that the critical magnetic Reynolds number seems to reach a constant value at large Reynolds number and that the global rotation can strongly decrease the dynamo onset. Our numerical results are understood within the framework of a simple dynamical system, and we propose a low-dimensional model for subcritical dynamo bifurcations. Implications for both laboratory dynamos and astrophysical magnetic fields are finally discussed.

Persistence and origin of the lunar core dynamo

Science.gov (United States)

Suavet, Clément; Weiss, Benjamin P.; Cassata, William S.; Shuster, David L.; Gattacceca, Jérôme; Chan, Lindsey; Garrick-Bethell, Ian; Head, James W.; Grove, Timothy L.; Fuller, Michael D.

2013-01-01

The lifetime of the ancient lunar core dynamo has implications for its power source and the mechanism of field generation. Here, we report analyses of two 3.56-Gy-old mare basalts demonstrating that they were magnetized in a stable and surprisingly intense dynamo magnetic field of at least ∼13 μT. These data extend the known lifetime of the lunar dynamo by ∼160 My and indicate that the field was likely continuously active until well after the final large basin-forming impact. This likely excludes impact-driven changes in rotation rate as the source of the dynamo at this time in lunar history. Rather, our results require a persistent power source like precession of the lunar mantle or a compositional convection dynamo. PMID:23650386

GLOBAL GALACTIC DYNAMO DRIVEN BY COSMIC RAYS AND EXPLODING MAGNETIZED STARS

International Nuclear Information System (INIS)

Hanasz, Michal; Woltanski, Dominik; Kowalik, Kacper

2009-01-01

We report the first results of the first global galactic-scale cosmic ray (CR)-MHD simulations of CR-driven dynamo. We investigate the dynamics of magnetized interstellar medium (ISM), which is dynamically coupled with CR gas. We assume that exploding stars deposit small-scale, randomly oriented, dipolar magnetic fields into the differentially rotating ISM, together with a portion of CRs, accelerated in supernova shocks. We conduct numerical simulations with the aid of a new parallel MHD code PIERNIK. We find that the initial magnetization of galactic disks by exploding magnetized stars forms favorable conditions for the CR-driven dynamo. We demonstrate that dipolar magnetic fields supplied on small supernova remnant scales can be amplified exponentially by the CR-driven dynamo, to the present equipartition values, and transformed simultaneously to large galactic scales. The resulting magnetic field structure in an evolved galaxy appears spiral in the face-on view and reveals the so-called X-shaped structure in the edge-on view.

Numerical models of planetary dynamos

International Nuclear Information System (INIS)

Glatzmaier, G.A.; Roberts, P.H.

1992-01-01

We describe a nonlinear, axisymmetric, spherical-shell model of planetary dynamos. This intermediate-type dynamo model requires a prescribed helicity field (the alpha effect) and a prescribed buoyancy force or thermal wind (the omega effect) and solves for the axisymmetric time-dependent magnetic and velocity fields. Three very different time dependent solutions are obtained from different prescribed sets of alpha and omega fields

Helicity, Reconnection, and Dynamo Effects

International Nuclear Information System (INIS)

Ji, Hantao

1998-01-01

The inter-relationships between magnetic helicity, magnetic reconnection, and dynamo effects are discussed. In laboratory experiments, where two plasmas are driven to merge, the helicity content of each plasma strongly affects the reconnection rate, as well as the shape of the diffusion region. Conversely, magnetic reconnection events also strongly affect the global helicity, resulting in efficient helicity cancellation (but not dissipation) during counter-helicity reconnection and a finite helicity increase or decrease (but less efficiently than dissipation of magnetic energy) during co-helicity reconnection. Close relationships also exist between magnetic helicity and dynamo effects. The turbulent electromotive force along the mean magnetic field (alpha-effect), due to either electrostatic turbulence or the electron diamagnetic effect, transports mean-field helicity across space without dissipation. This has been supported by direct measurements of helicity flux in a laboratory plasma. When the dynamo effect is driven by electromagnetic turbulence, helicity in the turbulent field is converted to mean-field helicity. In all cases, however, dynamo processes conserve total helicity except for a small battery effect, consistent with the observation that the helicity is approximately conserved during magnetic relaxation

Present state of the theory of a MHD-dynamo

Energy Technology Data Exchange (ETDEWEB)

Soward, A M; Roberts, P H

1976-01-01

A review is given of the state of the theory of a MHD-dynamo, that is, the theory of self-excited magnetic fields in homogeneous moving liquids. A description is given of two basic approaches-the turbulent dynamos of Steinbeck, Krause and Redler and the high-conductivity dynamo of Braginski, and a look is also taken at the relation between these dynamos. Finally a look is taken at the results of recent studies of the total problem of a MHD-dynamo, that is, at the results of recent attempts to solve the electro- and hydrodynamic equations and to obtain self-excited fields. 6 figs., 122 ref. (SJR)

The Hottest Hot Jupiters May Host Atmospheric Dynamos

Energy Technology Data Exchange (ETDEWEB)

Rogers, T. M. [Department of Mathematics and Statistics, Newcastle University, Newcastle upon Tyne (United Kingdom); McElwaine, J. N. [Planetary Science Institute, Tucson, AZ 85721 (United States)

2017-06-01

Hot Jupiters have proven themselves to be a rich class of exoplanets that test our theories of planetary evolution and atmospheric dynamics under extreme conditions. Here, we present three-dimensional magnetohydrodynamic simulations and analytic results that demonstrate that a dynamo can be maintained in the thin, stably stratified atmosphere of a hot Jupiter, independent of the presumed deep-seated dynamo. This dynamo is maintained by conductivity variations arising from strong asymmetric heating from the planets’ host star. The presence of a dynamo significantly increases the surface magnetic field strength and alters the overall planetary magnetic field geometry, possibly affecting star–planet magnetic interactions.

Integral equation approach to time-dependent kinematic dynamos in finite domains

International Nuclear Information System (INIS)

Xu Mingtian; Stefani, Frank; Gerbeth, Gunter

2004-01-01

The homogeneous dynamo effect is at the root of cosmic magnetic field generation. With only a very few exceptions, the numerical treatment of homogeneous dynamos is carried out in the framework of the differential equation approach. The present paper tries to facilitate the use of integral equations in dynamo research. Apart from the pedagogical value to illustrate dynamo action within the well-known picture of the Biot-Savart law, the integral equation approach has a number of practical advantages. The first advantage is its proven numerical robustness and stability. The second and perhaps most important advantage is its applicability to dynamos in arbitrary geometries. The third advantage is its intimate connection to inverse problems relevant not only for dynamos but also for technical applications of magnetohydrodynamics. The paper provides the first general formulation and application of the integral equation approach to time-dependent kinematic dynamos, with stationary dynamo sources, in finite domains. The time dependence is restricted to the magnetic field, whereas the velocity or corresponding mean-field sources of dynamo action are supposed to be stationary. For the spherically symmetric α 2 dynamo model it is shown how the general formulation is reduced to a coupled system of two radial integral equations for the defining scalars of the poloidal and toroidal field components. The integral equation formulation for spherical dynamos with general stationary velocity fields is also derived. Two numerical examples - the α 2 dynamo model with radially varying α and the Bullard-Gellman model - illustrate the equivalence of the approach with the usual differential equation method. The main advantage of the method is exemplified by the treatment of an α 2 dynamo in rectangular domains

A two-billion-year history for the lunar dynamo.

Science.gov (United States)

Tikoo, Sonia M; Weiss, Benjamin P; Shuster, David L; Suavet, Clément; Wang, Huapei; Grove, Timothy L

2017-08-01

Magnetic studies of lunar rocks indicate that the Moon generated a core dynamo with surface field intensities of ~20 to 110 μT between at least 4.25 and 3.56 billion years ago (Ga). The field subsequently declined to lunar dynamo by at least 1 billion years. Such a protracted history requires an extraordinarily long-lived power source like core crystallization or precession. No single dynamo mechanism proposed thus far can explain the strong fields inferred for the period before 3.56 Ga while also allowing the dynamo to persist in such a weakened state beyond ~2.5 Ga. Therefore, our results suggest that the dynamo was powered by at least two distinct mechanisms operating during early and late lunar history.

MHD turbulent dynamo in astrophysics: Theory and numerical simulation

Science.gov (United States)

Chou, Hongsong

2001-10-01

This thesis treats the physics of dynamo effects through theoretical modeling of magnetohydrodynamic (MHD) systems and direct numerical simulations of MHD turbulence. After a brief introduction to astrophysical dynamo research in Chapter 1, the following issues in developing dynamic models of dynamo theory are addressed: In Chapter 2, nonlinearity that arises from the back reaction of magnetic field on velocity field is considered in a new model for the dynamo α-effect. The dependence of α-coefficient on magnetic Reynolds number, kinetic Reynolds number, magnetic Prandtl number and statistical properties of MHD turbulence is studied. In Chapter 3, the time-dependence of magnetic helicity dynamics and its influence on dynamo effects are studied with a theoretical model and 3D direct numerical simulations. The applicability of and the connection between different dynamo models are also discussed. In Chapter 4, processes of magnetic field amplification by turbulence are numerically simulated with a 3D Fourier spectral method. The initial seed magnetic field can be a large-scale field, a small-scale magnetic impulse, and a combination of these two. Other issues, such as dynamo processes due to helical Alfvénic waves and the implication and validity of the Zeldovich relation, are also addressed in Appendix B and Chapters 4 & 5, respectively. Main conclusions and future work are presented in Chapter 5. Applications of these studies are intended for astrophysical magnetic field generation through turbulent dynamo processes, especially when nonlinearity plays central role. In studying the physics of MHD turbulent dynamo processes, the following tools are developed: (1)A double Fourier transform in both space and time for the linearized MHD equations (Chapter 2 and Appendices A & B). (2)A Fourier spectral numerical method for direct simulation of 3D incompressible MHD equations (Appendix C).

Planetary Dynamos: Investigations of Saturn and Ancient Mars

Energy Technology Data Exchange (ETDEWEB)

Stanley, Sabine [University of Toronto

2012-04-18

Magnetic field observations by spacecraft missions have provided vital information on planetary dynamos. The four giant planets as well as Earth, Mercury and Ganymede have observable magnetic fields generated by active dynamos. In contrast, Moon and Mars only have remanent crustal fields from dynamo action in their early histories. A variety of magnetic field morphologies and intensities can be found in the solar system. We have found that some of the differences between planetary magnetic fields can be explained as the result of the presence of boundary thermal variations or stably-stratified layers. In this talk, I will discuss how dynamos are affected by these complications and discuss the implications for Mars’ magnetic dichotomy and Saturn’s extremely axisymmetric magnetic field.

Measurement of the dynamo effect in a plasma

International Nuclear Information System (INIS)

Ji, H.; Prager, S.C.; Almagri, A.F.; Sarff, J.S.; Hirano, Y.; Toyama, H.

1995-11-01

A series of the detailed experiments has been conducted in three laboratory plasma devices to measure the dynamo electric field along the equilibrium field line (the α effect) arising from the correlation between the fluctuating flow velocity and magnetic field. The fluctuating flow velocity is obtained from probe measurement of the fluctuating E x B drift and electron diamagnetic drift. The three major findings are (1) the α effect accounts for the dynamo current generation, even in the time dependence through a ''sawtooth'' cycle; (2) at low collisionality the dynamo is explained primarily by the widely studied pressureless Magnetohydrodynamic (MHD) model, i.e., the fluctuating velocity is dominated by the E x B drift; (3) at high collisionality, a new ''electron diamagnetic dynamo'' is observed, in which the fluctuating velocity is dominated by the diamagnetic drift. In addition, direct measurements of the helicity flux indicate that the dynamo activity transports magnetic helicity from one part of the plasma to another, but the total helicity is roughly conserved, verifying J.B. Taylor's conjecture

The effect of collisionality and diamagnetism on the plasma dynamo

International Nuclear Information System (INIS)

Ji, H.; Yagi, Y.; Hattori, K.; Hirano, Y.; Shimada, T.; Maejima, Y.; Hayase, K.; Almagri, A.F.; Prager, S.C.; Sarff, J.S.

1995-01-01

Fluctuation-induced dynamo forces are measured over a wide range of electron collisionality in the edge of TPE-1RM20 Reversed-Field Pinch (RFP). In the collisionless region the Magnetohydrodynamic (MHD) dynamo alone can sustain the parallel current, while in the collisional region a new dynamo mechanism resulting from the fluctuations in the electron diamagnetic drift becomes dominant. A comprehensive picture of the RFP dynamo emerges by combining with earlier results from MST and REPUTE RFPs

Saturn Dynamo Model (Invited)

Science.gov (United States)

Glatzmaier, G. A.

2010-12-01

There has been considerable interest during the past few years about the banded zonal winds and global magnetic field on Saturn (and Jupiter). Questions regarding the depth to which the intense winds extend below the surface and the role they play in maintaining the dynamo continue to be debated. The types of computer models employed to address these questions fall into two main classes: general circulation models (GCMs) based on hydrostatic shallow-water assumptions from the atmospheric and ocean modeling communities and global non-hydrostatic deep convection models from the geodynamo and solar dynamo communities. The latter class can be further divided into Boussinesq models, which do not account for density stratification, and anelastic models, which do. Recent efforts to convert GCMs to deep circulation anelastic models have succeeded in producing fluid flows similar to those obtained from the original deep convection anelastic models. We describe results from one of the original anelastic convective dynamo simulations and compare them to a recent anelastic dynamo benchmark for giant gas planets. This benchmark is based on a polytropic reference state that spans five density scale heights with a radius and rotation rate similar to those of our solar system gas giants. The resulting magnetic Reynolds number is about 3000. Better spatial resolution will be required to produce more realistic predictions that capture the effects of both the density and electrical conductivity stratifications and include enough of the turbulent kinetic energy spectrum. Important additional physics may also be needed in the models. However, the basic models used in all simulation studies of the global dynamics of giant planets will hopefully first be validated by doing these simpler benchmarks.

Turbulent Liquid Metal Dynamo Experiments

International Nuclear Information System (INIS)

Forest, Cary

2007-01-01

The self-generation of magnetic fields in planets and stars--the dynamo effect--is a long-standing problem of magnetohydrodynamics and plasma physics. Until recently, research on the self-excitation process has been primarily theoretical. In this talk, I will begin with a tutorial on how magnetic fields are generated in planets and stars, describing the 'Standard Model' of self-excitation known as the alpha-omega dynamo. In this model, axisymmetric differential rotation can produce the majority of the magnetic field, but some non-axisymmetric, turbulence driven currents are also necessary. Understanding the conversion of turbulent kinetic energy in the fluid motion into electrical currents and thus magnetic fields, is a major challenge for both experiments and theory at this time. I will then report on recent results from a 1 meter diameter, spherical, liquid sodium dynamo experiment at the University of Wisconsin, in which the first clear evidence for these turbulence driven currents has been observed.

Mean-field theory and self-consistent dynamo modeling

International Nuclear Information System (INIS)

Yoshizawa, Akira; Yokoi, Nobumitsu

2001-12-01

Mean-field theory of dynamo is discussed with emphasis on the statistical formulation of turbulence effects on the magnetohydrodynamic equations and the construction of a self-consistent dynamo model. The dynamo mechanism is sought in the combination of the turbulent residual-helicity and cross-helicity effects. On the basis of this mechanism, discussions are made on the generation of planetary magnetic fields such as geomagnetic field and sunspots and on the occurrence of flow by magnetic fields in planetary and fusion phenomena. (author)

Magnetic Helicities and Dynamo Action in Magneto-rotational Turbulence

Energy Technology Data Exchange (ETDEWEB)

Bodo, G.; Rossi, P. [INAF/Osservatorio Astrofisico di Torino, Strada Osservatorio 20, I-10025 Pino Torinese (Italy); Cattaneo, F. [Department of Astronomy and Astrophysics, The University of Chicago, 5640 S. Ellis Avenue, Chicago IL 60637 (United States); Mignone, A., E-mail: bodo@oato.inaf.it [Dipartimento di Fisica, Università degli Studi di Torino, Via Pietro Giuria 1, 10125 Torino (Italy)

2017-07-10

We examine the relationship between magnetic flux generation, taken as an indicator of large-scale dynamo action, and magnetic helicity, computed as an integral over the dynamo volume, in a simple dynamo. We consider dynamo action driven by magneto-rotational turbulence (MRT) within the shearing-box approximation. We consider magnetically open boundary conditions that allow a flux of helicity in or out of the computational domain. We circumvent the problem of the lack of gauge invariance in open domains by choosing a particular gauge—the winding gauge—that provides a natural interpretation in terms of the average winding number of pairwise field lines. We use this gauge precisely to define and measure the helicity and the helicity flux for several realizations of dynamo action. We find in these cases that the system as a whole does not break reflectional symmetry and that the total helicity remains small even in cases when substantial magnetic flux is generated. We find no particular connection between the generation of magnetic flux and the helicity or the helicity flux through the boundaries. We suggest that this result may be due to the essentially nonlinear nature of the dynamo processes in MRT.

Energy transfers in dynamos with small magnetic Prandtl numbers

KAUST Repository

Kumar, Rohit

2015-06-25

We perform numerical simulation of dynamo with magnetic Prandtl number Pm = 0.2 on 10243 grid, and compute the energy fluxes and the shell-to-shell energy transfers. These computations indicate that the magnetic energy growth takes place mainly due to the energy transfers from large-scale velocity field to large-scale magnetic field and that the magnetic energy flux is forward. The steady-state magnetic energy is much smaller than the kinetic energy, rather than equipartition; this is because the magnetic Reynolds number is near the dynamo transition regime. We also contrast our results with those for dynamo with Pm = 20 and decaying dynamo. © 2015 Taylor & Francis.

Transitions in rapidly rotating convection dynamos

Science.gov (United States)

Tilgner, A.

2013-12-01

It is commonly assumed that buoyancy in the fluid core powers the geodynamo. We study here the minimal model of a convection driven dynamo, which is a horizontal plane layer in a gravity field, filled with electrically conducting fluid, heated from below and cooled from above, and rotating about a vertical axis. Such a plane layer may be viewed as a local approximation to the geophysically more relevant spherical geometry. The numerical simulations have been run on graphics processing units with at least 960 cores. If the convection is driven stronger and stronger at fixed rotation rate, the flow behaves at some point as if it was not rotating. This transition shows in the scaling of the heat transport which can be used to distinguish slow from rapid rotation. One expects dynamos to behave differently in these two flow regimes. But even within the convection flows which are rapidly rotating according to this criterion, it will be shown that different types of dynamos exist. In one state, the magnetic field strength obeys a scaling indicative of a magnetostrophic balance, in which the Lorentz force is in equilibrium with the Coriolis force. The flow in this case is helical. A different state exists at higher magnetic Reynolds numbers, in which the magnetic energy obeys a different scaling law and the helicity of the flow is much reduced. As one increases the Rayleigh number, all other parameters kept constant, one may find both types of dynamos separated by an interval of Rayleigh numbers in which there are no dynamos at all. The effect of these transitions on energy dissipation and mean field generation have also been studied.

Differential rotation and the solar dynamo

International Nuclear Information System (INIS)

Stix, M.

1976-01-01

A number of numerical models for the generation of mean magnetic fields is examined and the fields are compared with the mean field of the Sun. In particular, αω-dynamos, which are based on differential rotation and cyclonic turbulence, are studied in the case of cylindrical surfaces of isorotation. Such dynamos have an oscillatory antisymmetric field as the most easily excited mode. Only models with an angular velocity which increases with increasing depth appear to be compatible with observations. A search for oscillatory ω x j-dynamos, where the α-effect is replaced by a different mean electric field perpendicular to the rotation vector ω and the mean current density j is also made. Oscillatory modes do exist for models with radial shear. Their migration is equatorwards for inwards increasing angular velocity. (orig./BJ) [de

Efficiency Measurement Using a Motor-Dynamo Module

Science.gov (United States)

Ng, Pun-hon; Wong, Siu-ling; Mak, Se-yuen

2009-01-01

In this article, we describe a simple method which can be used to measure the efficiency of a low power dc motor, a motor-converted dynamo and a coupled motor-dynamo module as a function of the speed of rotation. The result can also be used to verify Faraday's law of electromagnetic induction. (Contains 1 table and 8 figures.)

Physical conditions for Jupiter-like dynamo models

Science.gov (United States)

Duarte, Lúcia D. V.; Wicht, Johannes; Gastine, Thomas

2018-01-01

The Juno mission will measure Jupiter's magnetic field with unprecedented precision and provide a wealth of additional data that will allow us to constrain the planet's interior structure and dynamics. Here we analyse 66 different numerical simulations in order to explore the sensitivity of the dynamo-generated magnetic field to the planets interior properties. Jupiter field models based on pre-Juno data and up-to-date interior models based on ab initio simulations serve as benchmarks. Our results suggest that Jupiter-like magnetic fields can be found for a number of different models. These complement the steep density gradients in the outer part of the simulated shell with an electrical conductivity profile that mimics the low conductivity in the molecular hydrogen layer and thus renders the dynamo action in this region largely unimportant. We find that whether we assume an ideal gas or use the more realistic interior model based on ab initio simulations makes no difference. However, two other factors are important. A low Rayleigh number leads to a too strong axial dipole contribution while the axial dipole dominance is lost altogether when the convective driving is too strong. The required intermediate range that yields Jupiter-like magnetic fields depends on the other system properties. The second important factor is the convective magnetic Reynolds number radial profile Rmc(r), basically a product of the non-axisymmetric flow velocity and electrical conductivity. We find that the depth where Rmc exceeds about 50 is a good proxy for the top of the dynamo region. When the dynamo region sits too deep, the axial dipole is once more too dominant due to geometric reasons. Extrapolating our results to Jupiter and the result suggests that the Jovian dynamo extends to 95% of the planetary radius. The zonal flow system in our simulations is dominated by an equatorial jet which remains largely confined to the molecular layer. Where the jet reaches down to higher

An Experimental MHD Dynamo

International Nuclear Information System (INIS)

Forest, C. B.

2002-01-01

The project is designed to understand current and magnetic field generation in plasmas and other magnetohydrodynamic systems. The experiments will investigate the generation of a dynamo using liquid Na

A long-lived lunar dynamo driven by continuous mechanical stirring.

Science.gov (United States)

Dwyer, C A; Stevenson, D J; Nimmo, F

2011-11-09

Lunar rocks contain a record of an ancient magnetic field that seems to have persisted for more than 400 million years and which has been attributed to a lunar dynamo. Models of conventional dynamos driven by thermal or compositional convection have had difficulty reproducing the existence and apparently long duration of the lunar dynamo. Here we investigate an alternative mechanism of dynamo generation: continuous mechanical stirring arising from the differential motion, due to Earth-driven precession of the lunar spin axis, between the solid silicate mantle and the liquid core beneath. We show that the fluid motions and the power required to drive a dynamo operating continuously for more than one billion years and generating a magnetic field that had an intensity of more than one microtesla 4.2 billion years ago are readily obtained by mechanical stirring. The magnetic field is predicted to decrease with time and to shut off naturally when the Moon recedes far enough from Earth that the dissipated power is insufficient to drive a dynamo; in our nominal model, this occurred at about 48 Earth radii (2.7 billion years ago). Thus, lunar palaeomagnetic measurements may be able to constrain the poorly known early orbital evolution of the Moon. This mechanism may also be applicable to dynamos in other bodies, such as large asteroids.

THE TURBULENT DYNAMO IN HIGHLY COMPRESSIBLE SUPERSONIC PLASMAS

Energy Technology Data Exchange (ETDEWEB)

Federrath, Christoph [Research School of Astronomy and Astrophysics, The Australian National University, Canberra, ACT 2611 (Australia); Schober, Jennifer [Universität Heidelberg, Zentrum für Astronomie, Institut für Theoretische Astrophysik, Albert-Ueberle-Strasse 2, D-69120 Heidelberg (Germany); Bovino, Stefano; Schleicher, Dominik R. G., E-mail: christoph.federrath@anu.edu.au [Institut für Astrophysik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, D-37077 Göttingen (Germany)

2014-12-20

The turbulent dynamo may explain the origin of cosmic magnetism. While the exponential amplification of magnetic fields has been studied for incompressible gases, little is known about dynamo action in highly compressible, supersonic plasmas, such as the interstellar medium of galaxies and the early universe. Here we perform the first quantitative comparison of theoretical models of the dynamo growth rate and saturation level with three-dimensional magnetohydrodynamical simulations of supersonic turbulence with grid resolutions of up to 1024{sup 3} cells. We obtain numerical convergence and find that dynamo action occurs for both low and high magnetic Prandtl numbers Pm = ν/η = 0.1-10 (the ratio of viscous to magnetic dissipation), which had so far only been seen for Pm ≥ 1 in supersonic turbulence. We measure the critical magnetic Reynolds number, Rm{sub crit}=129{sub −31}{sup +43}, showing that the compressible dynamo is almost as efficient as in incompressible gas. Considering the physical conditions of the present and early universe, we conclude that magnetic fields need to be taken into account during structure formation from the early to the present cosmic ages, because they suppress gas fragmentation and drive powerful jets and outflows, both greatly affecting the initial mass function of stars.

Magnetohydrodynamic dynamos in the presence of fossil magnetic fields

International Nuclear Information System (INIS)

Boyer, D.W.

1982-01-01

A fossil magnetic field embedded in the radiative core of the Sun has been thought possible for some time now. However, such a fossil magnetic field has, a priori, not been considered a visible phenomenon due to the effects of turbulence in the solar convection zone. Since a well developed theory (referred to herein as magnetohydrodynamic dynamo theory) exists for describing the regeneration of magnetic fields in astrophysical objects like the Sun, it is possible to quantitatively evaluate the interaction of a fossil magnetic field with the magnetohydrodynamic dynamo operating in the solar convection zone. In this work, after a brief description of the basic dynamo equations, a spherical model calculation of the solar dynamo is introduced. First, the interaction of a fossil magnetic field with a dynamo in which the regeneration mechanisms of cyclonic convection and large-scale, nonuniform rotation are confined to spherical shells is calculated. It is argued that the amount of amplification or suppression of a fossil magnetic field will be smallest for a uniform distribution of cyclonic convection and nonuniform rotation, as expected in the Sun. Secondly, the interaction of a fossil magnetic field with a dynamo having a uniform distribution of cyclonic convection and large-scale, nonuniform rotation is calculated. It is found that the dipole or quadrupole moments of a fossil magnetic field are suppressed by factors of -0.35 and -0.37, respectively

Magnetic reversals from planetary dynamo waves.

Science.gov (United States)

Sheyko, Andrey; Finlay, Christopher C; Jackson, Andrew

2016-11-24

A striking feature of many natural dynamos is their ability to undergo polarity reversals. The best documented example is Earth's magnetic field, which has reversed hundreds of times during its history. The origin of geomagnetic polarity reversals lies in a magnetohydrodynamic process that takes place in Earth's core, but the precise mechanism is debated. The majority of numerical geodynamo simulations that exhibit reversals operate in a regime in which the viscosity of the fluid remains important, and in which the dynamo mechanism primarily involves stretching and twisting of field lines by columnar convection. Here we present an example of another class of reversing-geodynamo model, which operates in a regime of comparatively low viscosity and high magnetic diffusivity. This class does not fit into the paradigm of reversal regimes that are dictated by the value of the local Rossby number (the ratio of advection to Coriolis force). Instead, stretching of the magnetic field by a strong shear in the east-west flow near the imaginary cylinder just touching the inner core and parallel to the axis of rotation is crucial to the reversal mechanism in our models, which involves a process akin to kinematic dynamo waves. Because our results are relevant in a regime of low viscosity and high magnetic diffusivity, and with geophysically appropriate boundary conditions, this form of dynamo wave may also be involved in geomagnetic reversals.

Bipolar Jets Launched by a Mean-field Accretion Disk Dynamo

Science.gov (United States)

Fendt, Christian; Gaßmann, Dennis

2018-03-01

By applying magnetohydrodynamic simulations, we investigate the launching of jets driven by a disk magnetic field generated by a mean-field disk dynamo. Extending our earlier studies, we explore the bipolar evolution of the disk α 2Ω-dynamo and the outflow. We confirm that a negative dynamo-α leads to a dipolar field geometry, whereas positive values generate quadrupolar fields. The latter remain mainly confined to the disk and cannot launch outflows. We investigate a parameter range for the dynamo-α ranging from a critical value below which field generation is negligible, {α }0,{crit}=-0.0005, to α 0 = ‑1.0. For weak | {α }0| ≤slant 0.07, two magnetic loop structures with opposite polarity may arise, which leads to reconnection and disturbs the field evolution and accretion-ejection process. For a strong dynamo-α, a higher poloidal magnetic energy is reached, roughly scaling with {E}mag}∼ | {α }0| , which also leads to higher accretion and ejection rates. The terminal jet speed is governed by the available magnetic energy and increases with the dynamo-α. We find jet velocities on the order of the inner disk Keplerian velocity. For a strong dynamo-α, oscillating dynamo modes may occur that can lead to a pulsed ejection. This is triggered by an oscillating mode in the toroidal field component. The oscillation period is comparable to the Keplerian timescale in the launching region, thus too short to be associated with the knots in observed jets. We find a hemispherically asymmetric evolution for the jet and counter-jet in the mass flux and field structure.

Systematic parameter study of dynamo bifurcations in geodynamo simulations

Science.gov (United States)

Petitdemange, Ludovic

2018-04-01

We investigate the nature of the dynamo bifurcation in a configuration applicable to the Earth's liquid outer core, i.e. in a rotating spherical shell with thermally driven motions with no-slip boundaries. Unlike in previous studies on dynamo bifurcations, the control parameters have been varied significantly in order to deduce general tendencies. Numerical studies on the stability domain of dipolar magnetic fields found a dichotomy between non-reversing dipole-dominated dynamos and the reversing non-dipole-dominated multipolar solutions. We show that, by considering weak initial fields, the above transition disappears and is replaced by a region of bistability for which dipolar and multipolar dynamos coexist. Such a result was also observed in models with free-slip boundaries in which the geostrophic zonal flow can develop and participate to the dynamo mechanism for non-dipolar fields. We show that a similar process develops in no-slip models when viscous effects are reduced sufficiently. The following three regimes are distinguished: (i) Close to the onset of convection (Rac) with only the most critical convective mode (wave number) being present, dynamos set in supercritically in the Ekman number regime explored here and are dipole-dominated. Larger critical magnetic Reynolds numbers indicate that they are particularly inefficient. (ii) in the range 3 10) , the relative importance of zonal flows increases with Ra in non-magnetic models. The field topology depends on the magnitude of the initial magnetic field. The dipolar branch has a subcritical behavior whereas the multipolar branch has a supercritical behavior. By approaching more realistic parameters, the extension of this bistable regime increases. A hysteretic behavior questions the common interpretation for geomagnetic reversals. Far above the dynamo threshold (by increasing the magnetic Prandtl number), Lorentz forces contribute to the first order force balance, as predicted for planetary dynamos. When

Stable Alfven wave dynamo action in the reversed field pinch

International Nuclear Information System (INIS)

Werley, K.A.

1984-01-01

Recent advances in linear resistive MHD stability analysis are used to calculate the quasi-linear dynamo mean electromotive force of Alfven waves. This emf is incorporated into a one-dimensional transport and mean-field evolution code. The changing equilibrium is then fed back to the stability code to complete a computational framework that self-consistently evaluates a dynamic plasma dynamo. Static quasi-linear Alfven wave calculations have shown that dynamo emfs on the order of eta vector J are possible. This suggested a possible explanation of RFP behavior and a new (externally driven) mechanism for extending operation and controlling field profiles (possibly reducing plasma transport). This thesis demonstrates that the dynamo emf can quickly induce plasma currents whose emf cancels the dynamo effect. This thesis also contains extensive studies of resistive Alfven wave properties. This includes behavior versus spectral location, magnetic Reynolds number and wave number

TIDALLY DRIVEN DYNAMOS IN A ROTATING SPHERE

International Nuclear Information System (INIS)

Cébron, D.; Hollerbach, R.

2014-01-01

Large-scale planetary or stellar magnetic fields generated by a dynamo effect are mostly attributed to flows forced by buoyancy forces in electrically conducting fluid layers. However, these large-scale fields may also be controlled by tides, as previously suggested for the star τ-boo, Mars, or the early Moon. By simulating a small local patch of a rotating fluid, Barker and Lithwick have recently shown that tides can drive small-scale dynamos by exciting a hydrodynamic instability, the so-called elliptical (or tidal) instability. By performing global magnetohydrodynamic simulations of a rotating spherical fluid body, we investigate if this instability can also drive the observed large-scale magnetic fields. We are thus interested in the dynamo threshold and the generated magnetic field in order to test if such a mechanism is relevant for planets and stars. Rather than solving the problem in a geometry deformed by tides, we consider a spherical fluid body and add a body force to mimic the tidal deformation in the bulk of the fluid. This allows us to use an efficient spectral code to solve the magnetohydrodynamic problem. We first compare the hydrodynamic results with theoretical asymptotic results and numerical results obtained in a truly deformed ellipsoid, which confirms the presence of elliptical instability. We then perform magnetohydrodynamic simulations and investigate the dynamo capability of the flow. Kinematic and self-consistent dynamos are finally simulated, showing that the elliptical instability is capable of generating a dipole-dominated large-scale magnetic field in global simulations of a fluid rotating sphere

Mean-field magnetohydrodynamics and dynamo theory

CERN Document Server

Krause, F

2013-01-01

Mean-Field Magnetohydrodynamics and Dynamo Theory provides a systematic introduction to mean-field magnetohydrodynamics and the dynamo theory, along with the results achieved. Topics covered include turbulence and large-scale structures; general properties of the turbulent electromotive force; homogeneity, isotropy, and mirror symmetry of turbulent fields; and turbulent electromotive force in the case of non-vanishing mean flow. The turbulent electromotive force in the case of rotational mean motion is also considered. This book is comprised of 17 chapters and opens with an overview of the gen

Solar and Stellar Dynamos Saas-Fee Advanced Course 39 Swiss Society for Astrophysics and Astronomy

CERN Document Server

2013-01-01

Astrophysical dynamos are at the heart of cosmic magnetic fields of a wide range of scales, from planets and stars to entire galaxies. This book presents a thorough, step-by-step introduction to solar and stellar dynamos. Looking first at the ultimate origin of cosmic seed magnetic fields, the antagonists of field amplification are next considered: resistive decay, flux expulsion, and flows ruled out by anti-dynamo theorems. Two kinematic flows that can act as dynamos are then studied: the Roberts cell and the CP-flow. Mean-field electrodynamics and derivation of the mean-field dynamo equations lead to the alpha Omega-dynamo, the flux transport dynamo, and dynamos based on the Babcock-Leighton mechanism. Alternatives to the mean-field theory are also presented, as are global MHD dynamo simulations. Fluctuations and grand minima in the solar cycle are discussed in terms of dynamo modulations through stochastic forcing and nonlinear effects. The book concludes with an overview of the major challenges in underst...

Magnetorotational Dynamo Action in the Shearing Box

Science.gov (United States)

Walker, Justin; Boldyrev, Stanislav

2017-10-01

Magnetic dynamo action caused by the magnetorotational instability is studied in the shearing-box approximation with no imposed net magnetic flux. Consistent with recent studies, the dynamo action is found to be sensitive to the aspect ratio of the box: it is much easier to obtain in tall boxes (stretched in the direction normal to the disk plane) than in long boxes (stretched in the radial direction). Our direct numerical simulations indicate that the dynamo is possible in both cases, given a large enough magnetic Reynolds number. To explain the relatively larger effort required to obtain the dynamo action in a long box, we propose that the turbulent eddies caused by the instability most efficiently fold and mix the magnetic field lines in the radial direction. As a result, in the long box the scale of the generated strong azimuthal (stream-wise directed) magnetic field is always comparable to the scale of the turbulent eddies. In contrast, in the tall box the azimuthal magnetic flux spreads in the vertical direction over a distance exceeding the scale of the turbulent eddies. As a result, different vertical sections of the tall box are permeated by large-scale nonzero azimuthal magnetic fluxes, facilitating the instability. NSF AGS-1261659, Vilas Associates Award, NSF-Teragrid Project TG-PHY110016.

Energy fluxes in helical magnetohydrodynamics and dynamo action

Indian Academy of Sciences (India)

... large-scale magnetic field arising due to non-helical interactions and (2) inverse energy flux of magnetic energy caused by helical interactions. Based on our flux results, a primitive model for galactic dynamo has been constructed. Our calculations yield dynamo time-scale for a typical galaxy to be of the order of 108 years.

A THREE-DIMENSIONAL BABCOCK-LEIGHTON SOLAR DYNAMO MODEL

International Nuclear Information System (INIS)

Miesch, Mark S.; Dikpati, Mausumi

2014-01-01

We present a three-dimensional (3D) kinematic solar dynamo model in which poloidal field is generated by the emergence and dispersal of tilted sunspot pairs (more generally bipolar magnetic regions, or BMRs). The axisymmetric component of this model functions similarly to previous 2.5 dimensional (2.5D, axisymmetric) Babcock-Leighton (BL) dynamo models that employ a double-ring prescription for poloidal field generation but we generalize this prescription into a 3D flux emergence algorithm that places BMRs on the surface in response to the dynamo-generated toroidal field. In this way, the model can be regarded as a unification of BL dynamo models (2.5D in radius/latitude) and surface flux transport models (2.5D in latitude/longitude) into a more self-consistent framework that builds on the successes of each while capturing the full 3D structure of the evolving magnetic field. The model reproduces some basic features of the solar cycle including an 11 yr periodicity, equatorward migration of toroidal flux in the deep convection zone, and poleward propagation of poloidal flux at the surface. The poleward-propagating surface flux originates as trailing flux in BMRs, migrates poleward in multiple non-axisymmetric streams (made axisymmetric by differential rotation and turbulent diffusion), and eventually reverses the polar field, thus sustaining the dynamo. In this Letter we briefly describe the model, initial results, and future plans

Some consequences of shear on galactic dynamos with helicity fluxes

Science.gov (United States)

Zhou, Hongzhe; Blackman, Eric G.

2017-08-01

Galactic dynamo models sustained by supernova (SN) driven turbulence and differential rotation have revealed that the sustenance of large-scale fields requires a flux of small-scale magnetic helicity to be viable. Here we generalize a minimalist analytic version of such galactic dynamos to explore some heretofore unincluded contributions from shear on the total turbulent energy and turbulent correlation time, with the helicity fluxes maintained by either winds, diffusion or magnetic buoyancy. We construct an analytic framework for modelling the turbulent energy and correlation time as a function of SN rate and shear. We compare our prescription with previous approaches that include only rotation. The solutions depend separately on the rotation period and the eddy turnover time and not just on their ratio (the Rossby number). We consider models in which these two time-scales are allowed to be independent and also a case in which they are mutually dependent on radius when a radial-dependent SN rate model is invoked. For the case of a fixed rotation period (or a fixed radius), we show that the influence of shear is dramatic for low Rossby numbers, reducing the correlation time of the turbulence, which, in turn, strongly reduces the saturation value of the dynamo compared to the case when the shear is ignored. We also show that even in the absence of winds or diffusive fluxes, magnetic buoyancy may be able to sustain sufficient helicity fluxes to avoid quenching.

Dynamos and MHD theory of turbulence suppression

International Nuclear Information System (INIS)

Yoshizawa, Akira; Yokoi, Nobumitsu; Itoh, Sanae-I; Itoh, Kimitaka

2003-12-01

Characteristics of electrically-conducting media are reviewed from the macroscopic viewpoint based on the mean-field magnetohydrodynamics, while being compared with the methodology and knowledge in fluid mechanics. The themes covered in this review range from the generation mechanism of stellar magnetic fields (dynamo) to transport properties in fusion. The primary concern here is to see the characteristics common to these apparently different phenomena, within the framework of the mean-field theory. Owing to the intrinsic limitation of the approach, the present discussions are limited more or less to specific aspects of phenomena. They are supplemented with the reference to theoretical, numerical, and observational approaches intrinsic to each theme. In the description of dynamo phenomena, an emphasis is put on the cross-helicity dynamo. Features common to the stellar magnetic-field generation and the rotational-motion drive in toroidal plasmas are illustrated on this basis. (author)

Energy transfers and magnetic energy growth in small-scale dynamo

KAUST Repository

Kumar, Rohit Raj; Verma, Mahendra K.; Samtaney, Ravi

2013-01-01

In this letter we investigate the dynamics of magnetic energy growth in small-scale dynamo by studying energy transfers, mainly energy fluxes and shell-to-shell energy transfers. We perform dynamo simulations for the magnetic Prandtl number Pm = 20

A Model of the Turbulent Electric Dynamo in Multi-Phase Media

Science.gov (United States)

Dementyeva, Svetlana; Mareev, Evgeny

2016-04-01

Many terrestrial and astrophysical phenomena witness the conversion of kinetic energy into electric energy (the energy of the quasi-stationary electric field) in conducting media, which is natural to treat as manifestations of electric dynamo by analogy with well-known theory of magnetic dynamo. Such phenomena include thunderstorms and lightning in the Earth's atmosphere and atmospheres of other planets, electric activity caused by dust storms in terrestrial and Martian atmospheres, snow storms, electrical discharges occurring in technological setups, connected with intense mixing of aerosol particles like in the milling industry. We have developed a model of the large-scale turbulent electric dynamo in a weakly conducting medium, containing two heavy-particle components. We have distinguished two main classes of charging mechanisms (inductive and non-inductive) in accordance with the dependence or independence of the electric charge, transferred during a particle collision, on the electric field intensity and considered the simplified models which demonstrate the possibility of dynamo realization and its specific peculiarities for these mechanisms. Dynamo (the large-scale electric field growth) appears due to the charge separation between the colliding and rebounding particles. This process is may be greatly intensified by the turbulent mixing of particles with different masses and, consequently, different inertia. The particle charge fluctuations themselves (small-scale dynamo), however, do not automatically mean growth of the large-scale electric field without a large-scale asymmetry. Such an asymmetry arises due to the dependence of the transferred charge magnitude on the electric field intensity in the case of the inductive mechanism of charge separation, or due to the gravity and convection for non-inductive mechanisms. We have found that in the case of the inductive mechanism the large-scale dynamo occurs if the medium conductivity is small enough while the

On self-exciting coupled Faraday disk homopolar dynamos driving series motors

Science.gov (United States)

Moroz, Irene M.; Hide, Raymond; Soward, Andrew M.

1998-06-01

We present the results of a preliminary analytical and numerical study of one of the simpler members of a hierarchy of N (where N ≥ 1) coupled self-exciting Faraday disk homopolar dynamos, incorporating motors as additional electrical elements driven by the dynamo-generated current, as proposed by Hide (1997). The hierarchy is a generalisation of a single disk dynamo ( N = 1) with just one electric motor in the system, and crucially, incorporating effects due to mechanical friction in both the disk and the motor, as investigated by Hide et al. (1996). This is describable by a set of three coupled autonomous nonlinear ordinary differential equations, which, due to the presence of the motor, has solutions corresponding to co-existing periodic states of increasing complexity, as well as to chaotic dynamics. We consider the case of two such homopolar dynamos ( N = 2) with generally dissimilar characteristics but coupled together magnetically, with the aim of determining the extent to which this coupled system differs in its behaviour from the single disk dynamo with a series motor (Hide et al. 1996). In the case when the units are identical, the behaviour of the double dynamo system (after initial transients have decayed away) is identical to that of the single dynamo system, with solutions (including “synchronised chaos”) locked in both amplitude and phase. When there is no motor in the system and the coefficient of mechanical friction in the disks is small, these transients resemble the well-known ‘non-synchronous’, but structurally unstable Rikitake solution.

Solar Dynamo Driven by Periodic Flow Oscillation

Science.gov (United States)

Mayr, Hans G.; Hartle, Richard E.; Einaudi, Franco (Technical Monitor)

2001-01-01

We have proposed that the periodicity of the solar magnetic cycle is determined by wave mean flow interactions analogous to those driving the Quasi Biennial Oscillation in the Earth's atmosphere. Upward propagating gravity waves would produce oscillating flows near the top of the radiation zone that in turn would drive a kinematic dynamo to generate the 22-year solar magnetic cycle. The dynamo we propose is built on a given time independent magnetic field B, which allows us to estimate the time dependent, oscillating components of the magnetic field, (Delta)B. The toroidal magnetic field (Delta)B(sub phi) is directly driven by zonal flow and is relatively large in the source region, (Delta)(sub phi)/B(sub Theta) much greater than 1. Consistent with observations, this field peaks at low latitudes and has opposite polarities in both hemispheres. The oscillating poloidal magnetic field component, (Delta)B(sub Theta), is driven by the meridional circulation, which is difficult to assess without a numerical model that properly accounts for the solar atmosphere dynamics. Scale-analysis suggests that (Delta)B(sub Theta) is small compared to B(sub Theta) in the dynamo region. Relative to B(sub Theta), however, the oscillating magnetic field perturbations are expected to be transported more rapidly upwards in the convection zone to the solar surface. As a result, (Delta)B(sub Theta) (and (Delta)B(sub phi)) should grow relative to B(sub Theta), so that the magnetic fields reverse at the surface as observed. Since the meridional and zonai flow oscillations are out of phase, the poloidal magnetic field peaks during times when the toroidal field reverses direction, which is observed. With the proposed wave driven flow oscillation, the magnitude of the oscillating poloidal magnetic field increases with the mean rotation rate of the fluid. This is consistent with the Bode-Blackett empirical scaling law, which reveals that in massive astrophysical bodies the magnetic moment tends

Simulation study of dynamo structure in reversed field pinch

International Nuclear Information System (INIS)

Nagata, A.; Sato, K.I.; Ashida, H.; Amano, T.

1992-10-01

The dynamo structure in the reversed field pinch (RFP) is studied through the nonlinear dynamics of single-helicity mode. Simulation is concentrated upon the physical structure of nonlinear interactions of the plasma flow and magnetic fluctuation. The result indicates that when the initial equilibrium profile is deformed by resistive diffusion, the radial flow is driven near the core of the plasma. As this flow forms a vortex structure and magnetic fluctuation grows radially, the dynamo electric field is spirally induced just inside the reversal surface and then the toroidal flux is increased. This dynamo electric field correlates to nonlinear evolution of the kinetic energy of m=1 mode, and the increase of the toroidal flux is originated in the growth process of the magnetic energy of this mode. Consequently, the RFP configuration can be sustained by the single-helicity evolution of m=1 mode alone, and the electric field induced by the interactions of the toroidal velocity and the radial magnetic field is the most dominant source on the dynamo action. (author)

Gravitational dynamos and the low-frequency geomagnetic secular variation.

Science.gov (United States)

Olson, P

2007-12-18

Self-sustaining numerical dynamos are used to infer the sources of low-frequency secular variation of the geomagnetic field. Gravitational dynamo models powered by compositional convection in an electrically conducting, rotating fluid shell exhibit several regimes of magnetic field behavior with an increasing Rayleigh number of the convection, including nearly steady dipoles, chaotic nonreversing dipoles, and chaotic reversing dipoles. The time average dipole strength and dipolarity of the magnetic field decrease, whereas the dipole variability, average dipole tilt angle, and frequency of polarity reversals increase with Rayleigh number. Chaotic gravitational dynamos have large-amplitude dipole secular variation with maximum power at frequencies corresponding to a few cycles per million years on Earth. Their external magnetic field structure, dipole statistics, low-frequency power spectra, and polarity reversal frequency are comparable to the geomagnetic field. The magnetic variability is driven by the Lorentz force and is characterized by an inverse correlation between dynamo magnetic and kinetic energy fluctuations. A constant energy dissipation theory accounts for this inverse energy correlation, which is shown to produce conditions favorable for dipole drift, polarity reversals, and excursions.

3-dimensional simulation of dynamo effect of reversed field pinch

International Nuclear Information System (INIS)

Koide, Shinji.

1990-09-01

A non-linear numerical simulation of the dynamo effect of a reversed field pinch (RFP) with finite beta is presented. It is shown that the m=-1, n=(9,10,11,....,19) modes cause the dynamo effect and sustain the field reversed configuration. The role of the m=0 modes on the dynamo effect is carefully examined. Our simulation shows that the magnetic field fluctuation level scales as S -0.2 or S -0.3 in the range of 10 3 5 , while Nebel, Caramana and Schnack obtained the fluctuation level is independent of S for a pressureless RFP plasma. (author)

Stellar rotation, dynamo, electromagnetic braking, age an lithium burning

International Nuclear Information System (INIS)

Schatzmann, E.

1989-01-01

After an introduction describing the problem and the observational tests of the theory a consistant model of the dynamo mechanism in rotating star is presented. This provides for the electromagnetic braking a law Ω ∼ (1.t/t c har) -3 / 4 , in good agreement with the observations. This rests on the hypothesis that the main contribution to the EM braking is due to the magnetic field present in bipolar magnetic spots at the surface of the stellar disk. The premain sequence EM braking provides an initial angular velocity on arrival on the main sequence which is slightly smaller than the angular velocity when the dynamo turns on. Starting the dynamo takes place when the level at which the (αΩ) dynamo number becomes larger than one drops below the ionization level of hydrogen. Before that time, the surface dynamo mechanism would take place in a region of low ionization, where the magnetic Reynods number is so small that dissipation overtakes the building of the magnetic field. Turbulent mixing with a turbulent diffusion coefficient proportional to Ω 2 provides a consistant picture of the time and mass dependance of the surface abundance of Lithium. When the level of Li-burning is sufficiently far from the bottom of the convective zone an asymptotic value of lithium abundance is reached. This can explain the anomalous Li abundance of pop.II stars. (author). 40 refs

Dynamos driven by poloidal flows in untwisted, curved and flat Riemannian diffusive flux tubes

International Nuclear Information System (INIS)

De Andrade, L.C.G.

2010-01-01

Recently Vishik anti-fast dynamo theorem has been tested against non-stretching flux tubes (Phys. Plasmas, 15 (2008)). In this paper, another anti dynamo theorem, called Cowling's theorem, which states that axisymmetric magnetic fields cannot support dynamo action, is carefully tested against thick tubular and curved Riemannian untwisted flows, as well as thin flux tubes in diffusive and diffusion less media. In the non-diffusive media Cowling's theorem is not violated in thin Riemann-flat untwisted flux tubes, where the Frenet curvature is negative. Nevertheless the diffusion action in the thin flux tube leads to a dynamo action driven by poloidal flows as shown by Love and Gubbins (Geophysical Res., 23 (1996) 857) in the context of geo dynamos. Actually it is shown that a slow dynamo action is obtained. In this case the Frenet and Riemann curvature still vanishes. In the case of magnetic filaments in diffusive media dynamo action is obtained when the Frenet scalar curvature is negative. Since the Riemann curvature tensor can be expressed in terms of the Frenet curvature of the magnetic flux tube axis, this result can be analogous to a recent result obtained by Chicone, Latushkin and Smith, which states that geodesic curvature in compact Riemannian manifolds can drive dynamo action in the manifold. It is also shown that in the absence of diffusion, magnetic energy does not grow but magnetic toroidal magnetic field can be generated by the poloidal field, what is called a plasma dynamo.

Small-scale dynamo at low magnetic Prandtl numbers

Science.gov (United States)

Schober, Jennifer; Schleicher, Dominik; Bovino, Stefano; Klessen, Ralf S.

2012-12-01

The present-day Universe is highly magnetized, even though the first magnetic seed fields were most probably extremely weak. To explain the growth of the magnetic field strength over many orders of magnitude, fast amplification processes need to operate. The most efficient mechanism known today is the small-scale dynamo, which converts turbulent kinetic energy into magnetic energy leading to an exponential growth of the magnetic field. The efficiency of the dynamo depends on the type of turbulence indicated by the slope of the turbulence spectrum v(ℓ)∝ℓϑ, where v(ℓ) is the eddy velocity at a scale ℓ. We explore turbulent spectra ranging from incompressible Kolmogorov turbulence with ϑ=1/3 to highly compressible Burgers turbulence with ϑ=1/2. In this work, we analyze the properties of the small-scale dynamo for low magnetic Prandtl numbers Pm, which denotes the ratio of the magnetic Reynolds number, Rm, to the hydrodynamical one, Re. We solve the Kazantsev equation, which describes the evolution of the small-scale magnetic field, using the WKB approximation. In the limit of low magnetic Prandtl numbers, the growth rate is proportional to Rm(1-ϑ)/(1+ϑ). We furthermore discuss the critical magnetic Reynolds number Rmcrit, which is required for small-scale dynamo action. The value of Rmcrit is roughly 100 for Kolmogorov turbulence and 2700 for Burgers. Furthermore, we discuss that Rmcrit provides a stronger constraint in the limit of low Pm than it does for large Pm. We conclude that the small-scale dynamo can operate in the regime of low magnetic Prandtl numbers if the magnetic Reynolds number is large enough. Thus, the magnetic field amplification on small scales can take place in a broad range of physical environments and amplify week magnetic seed fields on short time scales.

Small-scale dynamo at low magnetic Prandtl numbers.

Science.gov (United States)

Schober, Jennifer; Schleicher, Dominik; Bovino, Stefano; Klessen, Ralf S

2012-12-01

The present-day Universe is highly magnetized, even though the first magnetic seed fields were most probably extremely weak. To explain the growth of the magnetic field strength over many orders of magnitude, fast amplification processes need to operate. The most efficient mechanism known today is the small-scale dynamo, which converts turbulent kinetic energy into magnetic energy leading to an exponential growth of the magnetic field. The efficiency of the dynamo depends on the type of turbulence indicated by the slope of the turbulence spectrum v(ℓ)∝ℓ^{ϑ}, where v(ℓ) is the eddy velocity at a scale ℓ. We explore turbulent spectra ranging from incompressible Kolmogorov turbulence with ϑ=1/3 to highly compressible Burgers turbulence with ϑ=1/2. In this work, we analyze the properties of the small-scale dynamo for low magnetic Prandtl numbers Pm, which denotes the ratio of the magnetic Reynolds number, Rm, to the hydrodynamical one, Re. We solve the Kazantsev equation, which describes the evolution of the small-scale magnetic field, using the WKB approximation. In the limit of low magnetic Prandtl numbers, the growth rate is proportional to Rm^{(1-ϑ)/(1+ϑ)}. We furthermore discuss the critical magnetic Reynolds number Rm_{crit}, which is required for small-scale dynamo action. The value of Rm_{crit} is roughly 100 for Kolmogorov turbulence and 2700 for Burgers. Furthermore, we discuss that Rm_{crit} provides a stronger constraint in the limit of low Pm than it does for large Pm. We conclude that the small-scale dynamo can operate in the regime of low magnetic Prandtl numbers if the magnetic Reynolds number is large enough. Thus, the magnetic field amplification on small scales can take place in a broad range of physical environments and amplify week magnetic seed fields on short time scales.

A spherical Taylor-Couette dynamo

Science.gov (United States)

Marcotte, Florence; Gissinger, Christophe

2016-04-01

We present a new scenario for magnetic field amplification in the planetary interiors where an electrically conducting fluid is confined in a differentially rotating, spherical shell (spherical Couette flow) with thin aspect-ratio. When the angular momentum sufficiently decreases outwards, a primary hydrodynamic instability is widely known to develop in the equatorial region, characterized by pairs of counter-rotating, axisymmetric toroidal vortices (Taylor vortices) similar to those observed in cylindrical Couette flow. We characterize the subcritical dynamo bifurcation due to this spherical Taylor-Couette flow and study its evolution as the flow successively breaks into wavy and turbulent Taylor vortices for increasing Reynolds number. We show that the critical magnetic Reynolds number seems to reach a constant value as the Reynolds number is gradually increased. The role of global rotation on the dynamo threshold and the implications for planetary interiors are finally discussed.

Towards the geophysical regime in numerical dynamo models: studies of rapidly-rotating convection driven dynamos with low Pm and constant heat flux boundary conditions

DEFF Research Database (Denmark)

Sheyko, A.A.; Finlay, Chris; Marti, P.

We present a set of numerical dynamo models with the convection strength varied by a factor of 30 and the ratio of magnetic to viscous diffusivities by a factor of 20 at rapid rotation rates (E =nu/(2 Omega d^2 ) = 10-6 and 10-7 ) using a heat flux outer BC. This regime has been little explored...... on the structure of the dynamos and how this changes in relation to the selection of control parameters, a comparison with the proposed rotating convection and dynamo scaling laws, energy spectra of steady solutions and inner core rotation rates. Magnetic field on the CMB. E=2.959*10-7, Ra=6591.0, Pm=0.05, Pr=1....

Magnetic field saturation in the Riga dynamo experiment.

Science.gov (United States)

Gailitis, A; Lielausis, O; Platacis, E; Dement'ev, S; Cifersons, A; Gerbeth, G; Gundrum, T; Stefani, F; Christen, M; Will, G

2001-04-02

After the dynamo experiment in November 1999 [A. Gailitis et al., Phys. Rev. Lett. 84, 4365 (2000)] had shown magnetic field self-excitation in a spiraling liquid metal flow, in a second series of experiments emphasis was placed on the magnetic field saturation regime as the next principal step in the dynamo process. The dependence of the strength of the magnetic field on the rotation rate is studied. Various features of the saturated magnetic field are outlined and possible saturation mechanisms are discussed.

Stable Alfven-wave dynamo action in the reversed-field pinch

International Nuclear Information System (INIS)

Werley, K.A.

1984-01-01

Previous theoretical work has suggested that Alfven waves may be related to the anomalous toroidal magnetic flux generation and extended (over classical expectations) discharge times observed in the reversed-field pinch. This thesis examines the dynamo action of stable Alfven waves as a means of generating toroidal flux. Recent advances in linear resistive MHD stability analysis are used to calculate the quasi-linear dynamo mean electromotive force of Alfven waves. This emf is incorporated into a one-dimensional transport and mean-field evolution code. The changing equilibrium is then fed back to the stability code to complete a computational framework that self-consistently evaluates a dynamic plasma dynamo. This technique is readily extendable to other plasmas in which dynamic stable model action is of interest. Such plasmas include Alfven wave current-drive and plasma heating for fusion devices, as well as astrophysical and geophysical dynamo systems. This study also contains extensive studies of resistive Alfven wave properties. This includes behavior versus spectral location, magnetic Reynolds number and wave number

A wet, heterogeneous lunar interior: Lower mantle and core dynamo evolution

Science.gov (United States)

Evans, A. J.; Zuber, M. T.; Weiss, B. P.; Tikoo, S. M.

2014-05-01

While recent analyses of lunar samples indicate the Moon had a core dynamo from at least 4.2-3.56 Ga, mantle convection models of the Moon yield inadequate heat flux at the core-mantle boundary to sustain thermal core convection for such a long time. Past investigations of lunar dynamos have focused on a generally homogeneous, relatively dry Moon, while an initial compositionally stratified mantle is the expected consequence of a postaccretionary lunar magma ocean. Furthermore, recent re-examination of Apollo samples and geophysical data suggests that the Moon contains at least some regions with high water content. Using a finite element model, we investigate the possible consequences of a heterogeneously wet, compositionally stratified interior for the evolution of the Moon. We find that a postoverturn model of mantle cumulates could result in a core heat flux sufficiently high to sustain a dynamo through 2.5 Ga and a maximum surface, dipolar magnetic field strength of less than 1 μT for a 350-km core and near ˜2 μT for a 450-km core. We find that if water was transported or retained preferentially in the deep interior, it would have played a significant role in transporting heat out of the deep interior and reducing the lower mantle temperature. Thus, water, if enriched in the lower mantle, could have influenced core dynamo timing by over 1.0 Gyr and enhanced the vigor of a lunar core dynamo. Our results demonstrate the plausibility of a convective lunar core dynamo even beyond the period currently indicated by the Apollo samples.

Feasible homopolar dynamo with sliding liquid-metal contacts

OpenAIRE

Priede, Jānis; Avalos-Zúñiga, Raúl

2013-01-01

We present a feasible homopolar dynamo design consisting of a flat, multi-arm spiral coil, which is placed above a fast-spinning metal ring and connected to the latter by sliding liquid-metal electrical contacts. Using a simple, analytically solvable axisymmetric model, we determine the optimal design of such a setup. For small contact resistance, the lowest magnetic Reynolds number, Rm~34.6, at which the dynamo can work, is attained at the optimal ratio of the outer and inner radii of the ri...

A simple stochastic model for dipole moment fluctuations in numerical dynamo simulations

Directory of Open Access Journals (Sweden)

Domenico G. eMeduri

2016-04-01

Full Text Available Earth's axial dipole field changes in a complex fashion on many differenttime scales ranging from less than a year to tens of million years.Documenting, analysing, and replicating this intricate signalis a challenge for data acquisition, theoretical interpretation,and dynamo modelling alike. Here we explore whether axial dipole variationscan be described by the superposition of a slow deterministic driftand fast stochastic fluctuations, i.e. by a Langevin-type system.The drift term describes the time averaged behaviour of the axial dipole variations,whereas the stochastic part mimics complex flow interactions over convective time scales.The statistical behaviour of the system is described by a Fokker-Planck equation whichallows useful predictions, including the average rates of dipole reversals and excursions.We analyse several numerical dynamo simulations, most of which havebeen integrated particularly long in time, and also the palaeomagneticmodel PADM2M which covers the past 2 Myr.The results show that the Langevin description provides a viable statistical modelof the axial dipole variations on time scales longer than about 1 kyr.For example, the axial dipole probability distribution and the average reversalrate are successfully predicted.The exception is PADM2M where the stochastic model reversal rate seems too low.The dependence of the drift on the axial dipolemoment reveals the nonlinear interactions that establish thedynamo balance. A separate analysis of inductive and diffusive magnetic effectsin three dynamo simulations suggests that the classical quadraticquenching of induction predicted by mean-field theory seems at work.

Dynamical Regimes and the Dynamo Bifurcation in Geodynamo Simulations

Science.gov (United States)

Petitdemange, L.

2017-12-01

We investigate the nature of the dynamo bifurcation in a configuration applicable to the Earth's liquid outer core : in a rotating spherical shell with thermally driven motions with no-slip boundaries. Unlike previous studies on dynamo bifurcations, the control parameters have been varied significantly in order to deduce general tendencies. Numerical studies on the stability domain of dipolar magnetic fields found a dichotomy between non-reversing dipole-dominated dynamos and the reversing non-dipole-dominated multipolar solutions. We show that, by considering weak initial fields, the above transition is replaced by a region of bistability for which dipolar and multipolar dynamos coexist. Such a result was also observed in models with free-slip boundaries in which the strong shear of geostrophic zonal flows can develop and gives rise to non-dipolar fields. We show that a similar process develops in no-slip models when viscous effects are reduced sufficiently.Close to the onset of convection (Rac), the axial dipole grows exponentially in the kinematic phase and saturation occurs by marginally changing the flow structure close to the dynamo threshold Rmc. The resulting bifurcation is then supercritical.In the range 3RacIf (Ra/Ra_c>10), important zonal flows develop in non-magnetic models with low viscosity. The field topology depends on the initial magnetic field. The dipolar branch has a subcritical behaviour whereas the multipolar branch is supercritical. By approaching more realistic parameters, the extension of this bistable regime increases (lower Rossby numbers). An hysteretic behaviour questions the common interpretation for geomagnetic reversals. Far above Rm_c$, the Lorentz force becomes dominant, as it is expected in planetary cores.

Spectral gaps, inertial manifolds and kinematic dynamos

Energy Technology Data Exchange (ETDEWEB)

Nunez, Manuel [Departamento de Analisis Matematico, Universidad de Valladolid, 47005 Valladolid (Spain)]. E-mail: mnjmhd@am.uva.es

2005-10-17

Inertial manifolds are desirable objects when ones wishes a dynamical process to behave asymptotically as a finite-dimensional ones. Recently [Physica D 194 (2004) 297] these manifolds are constructed for the kinematic dynamo problem with time-periodic velocity. It turns out, however, that the conditions imposed on the fluid velocity to guarantee the existence of inertial manifolds are too demanding, in the sense that they imply that all the solutions tend exponentially to zero. The inertial manifolds are meaningful because they represent different decay rates, but the classical dynamos where the magnetic field is maintained or grows are not covered by this approach, at least until more refined estimates are found.

New Mexico Liquid Metal αω -dynamo experiment: Most Recent Progress

Science.gov (United States)

Si, Jiahe; Sonnenfeld, Richard; Colgate, Art; Li, Hui

2017-10-01

The goal of the New Mexico Liquid Metal αω -dynamo experiment is to demonstrate a galactic dynamo can be generated through two phases, the ω-phase and α-phase by two semi-coherent flows in laboratory. We have demonstrated an 8-fold poloidal-to-toroidal flux amplification from differential rotation (the ω-effect) by minimizing turbulence in our apparatus. To demonstrate the α-effect, major upgrades are needed. The upgrades include building a helicity injection facility, mounting new 100hp motors and new sensors, designing a new data acquisition system capable of transmitting data from about 80 sensors in a high speed rotating frame with an overall 200kS/sec sampling rate. We hope the upgrade can be utilized to answer the question of whether a self-sustaining αω -dynamo can be implemented with a realistic lab fluid flow field, as well as to obtain more details to understand dynamo action in highly turbulent Couette flow.

Energy transfers and magnetic energy growth in small-scale dynamo

KAUST Repository

Kumar, Rohit Raj

2013-12-01

In this letter we investigate the dynamics of magnetic energy growth in small-scale dynamo by studying energy transfers, mainly energy fluxes and shell-to-shell energy transfers. We perform dynamo simulations for the magnetic Prandtl number Pm = 20 on 10243 grid using the pseudospectral method. We demonstrate that the magnetic energy growth is caused by nonlocal energy transfers from the large-scale or forcing-scale velocity field to small-scale magnetic field. The peak of these energy transfers moves towards lower wave numbers as dynamo evolves, which is the reason why the integral scale of the magnetic field increases with time. The energy transfers U2U (velocity to velocity) and B2B (magnetic to magnetic) are forward and local. Copyright © EPLA, 2013.

Nonlinear dynamo in the intracluster medium

Science.gov (United States)

Beresnyak, Andrey; Miniati, Francesco

2018-05-01

Hot plasma in galaxy clusters, the intracluster medium is observed to be magnetized with magnetic fields of around a μG and the correlation scales of tens of kiloparsecs, the largest scales of the magnetic field so far observed in the Universe. Can this magnetic field be used as a test of the primordial magnetic field in the early Universe? In this paper, we argue that if the cluster field was created by the nonlinear dynamo, the process would be insensitive to the value of the initial field. Our model combines state of the art hydrodynamic simulations of galaxy cluster formation in a fully cosmological context with nonlinear dynamo theory. Initial field is not a parameter in this model, yet it predicts magnetic scale and strength compatible with observations.

Turbulent transport coefficients in spherical wedge dynamo simulations of solar-like stars

Science.gov (United States)

Warnecke, J.; Rheinhardt, M.; Tuomisto, S.; Käpylä, P. J.; Käpylä, M. J.; Brandenburg, A.

2018-01-01

Aims: We investigate dynamo action in global compressible solar-like convective dynamos in the framework of mean-field theory. Methods: We simulate a solar-type star in a wedge-shaped spherical shell, where the interplay between convection and rotation self-consistently drives a large-scale dynamo. To analyze the dynamo mechanism we apply the test-field method for azimuthally (φ) averaged fields to determine the 27 turbulent transport coefficients of the electromotive force, of which six are related to the α tensor. This method has previously been used either in simulations in Cartesian coordinates or in the geodynamo context and is applied here for the first time to fully compressible simulations of solar-like dynamos. Results: We find that the φφ-component of the α tensor does not follow the profile expected from that of kinetic helicity. The turbulent pumping velocities significantly alter the effective mean flows acting on the magnetic field and therefore challenge the flux transport dynamo concept. All coefficients are significantly affected by dynamically important magnetic fields. Quenching as well as enhancement are being observed. This leads to a modulation of the coefficients with the activity cycle. The temporal variations are found to be comparable to the time-averaged values and seem to be responsible for a nonlinear feedback on the magnetic field generation. Furthermore, we quantify the validity of the Parker-Yoshimura rule for the equatorward propagation of the mean magnetic field in the present case.

Effects of anisotropies in turbulent magnetic diffusion in mean-field solar dynamo models

Energy Technology Data Exchange (ETDEWEB)

Pipin, V. V. [Institute of Solar-Terrestrial Physics, Russian Academy of Sciences, Irkutsk 664033 (Russian Federation); Kosovichev, A. G. [Hansen Experimental Physics Laboratory, Stanford University, Stanford, CA 94305 (United States)

2014-04-10

We study how anisotropies of turbulent diffusion affect the evolution of large-scale magnetic fields and the dynamo process on the Sun. The effect of anisotropy is calculated in a mean-field magnetohydrodynamics framework assuming that triple correlations provide relaxation to the turbulent electromotive force (so-called the 'minimal τ-approximation'). We examine two types of mean-field dynamo models: the well-known benchmark flux-transport model and a distributed-dynamo model with a subsurface rotational shear layer. For both models, we investigate effects of the double- and triple-cell meridional circulation, recently suggested by helioseismology and numerical simulations. To characterize the anisotropy effects, we introduce a parameter of anisotropy as a ratio of the radial and horizontal intensities of turbulent mixing. It is found that the anisotropy affects the distribution of magnetic fields inside the convection zone. The concentration of the magnetic flux near the bottom and top boundaries of the convection zone is greater when the anisotropy is stronger. It is shown that the critical dynamo number and the dynamo period approach to constant values for large values of the anisotropy parameter. The anisotropy reduces the overlap of toroidal magnetic fields generated in subsequent dynamo cycles, in the time-latitude 'butterfly' diagram. If we assume that sunspots are formed in the vicinity of the subsurface shear layer, then the distributed dynamo model with the anisotropic diffusivity satisfies the observational constraints from helioseismology and is consistent with the value of effective turbulent diffusion estimated from the dynamics of surface magnetic fields.

Identification of vortexes obstructing the dynamo mechanism in laboratory experiments

Science.gov (United States)

Limone, A.; Hatch, D. R.; Forest, C. B.; Jenko, F.

2013-06-01

The magnetohydrodynamic dynamo effect explains the generation of self-sustained magnetic fields in electrically conducting flows, especially in geo- and astrophysical environments. Yet the details of this mechanism are still unknown, e.g., how and to which extent the geometry, the fluid topology, the forcing mechanism, and the turbulence can have a negative effect on this process. We report on numerical simulations carried out in spherical geometry, analyzing the predicted velocity flow with the so-called singular value decomposition, a powerful technique that allows us to precisely identify vortexes in the flow which would be difficult to characterize with conventional spectral methods. We then quantify the contribution of these vortexes to the growth rate of the magnetic energy in the system. We identify an axisymmetric vortex, whose rotational direction changes periodically in time, and whose dynamics are decoupled from those of the large scale background flow, that is detrimental for the dynamo effect. A comparison with experiments is carried out, showing that similar dynamics were observed in cylindrical geometry. These previously unexpected eddies, which impede the dynamo effect, offer an explanation for the experimental difficulties in attaining a dynamo in spherical geometry.

DYNAMO-HIA--a Dynamic Modeling tool for generic Health Impact Assessments.

Directory of Open Access Journals (Sweden)

Stefan K Lhachimi

Full Text Available BACKGROUND: Currently, no standard tool is publicly available that allows researchers or policy-makers to quantify the impact of policies using epidemiological evidence within the causal framework of Health Impact Assessment (HIA. A standard tool should comply with three technical criteria (real-life population, dynamic projection, explicit risk-factor states and three usability criteria (modest data requirements, rich model output, generally accessible to be useful in the applied setting of HIA. With DYNAMO-HIA (Dynamic Modeling for Health Impact Assessment, we introduce such a generic software tool specifically designed to facilitate quantification in the assessment of the health impacts of policies. METHODS AND RESULTS: DYNAMO-HIA quantifies the impact of user-specified risk-factor changes on multiple diseases and in turn on overall population health, comparing one reference scenario with one or more intervention scenarios. The Markov-based modeling approach allows for explicit risk-factor states and simulation of a real-life population. A built-in parameter estimation module ensures that only standard population-level epidemiological evidence is required, i.e. data on incidence, prevalence, relative risks, and mortality. DYNAMO-HIA provides a rich output of summary measures--e.g. life expectancy and disease-free life expectancy--and detailed data--e.g. prevalences and mortality/survival rates--by age, sex, and risk-factor status over time. DYNAMO-HIA is controlled via a graphical user interface and is publicly available from the internet, ensuring general accessibility. We illustrate the use of DYNAMO-HIA with two example applications: a policy causing an overall increase in alcohol consumption and quantifying the disease-burden of smoking. CONCLUSION: By combining modest data needs with general accessibility and user friendliness within the causal framework of HIA, DYNAMO-HIA is a potential standard tool for health impact assessment based

When did the lunar core dynamo cease?

Science.gov (United States)

Tikoo, S. M.; Weiss, B. P.; Shuster, D. L.; Fuller, M.

2013-12-01

Remanent magnetization in the lunar crust and in returned Apollo samples has long suggested that the Moon formed a metallic core and an ancient dynamo magnetic field. Recent paleomagnetic investigations of lunar samples demonstrate that the Moon had a core dynamo which produced ~30-110 μT surface fields between at least 4.2 and 3.56 billion years ago (Ga). Tikoo et al. (1) recently found that the field declined to below several μT by 3.19 Ga. However, given that even values of a few μT are at the upper end of the intensities predicted by dynamo theory for this late in lunar history, it remains uncertain when the lunar dynamo actually ceased completely. Determining this requires a young lunar rock with extraordinarily high magnetic recording fidelity. With this goal, we are conducting a new analysis of young regolith breccia 15498. Although the breccia's age is currently uncertain, the presence of Apollo 15-type mare basalt clasts provides an upper limit constraint of ~3.3 Ga, while trapped Ar data suggest a lithification age of ~1.3 Ga. In stark contrast to the multidomain character of virtually all lunar crystalline rocks, the magnetic carriers in 15498 are on average pseudo-single domain to superparamagnetic, indicating that the sample should provide high-fidelity paleointensity records. A previous alternating field (AF) and thermal demagnetization study of 15498 by Gose et al. (2) observed that the sample carries stable remanent magnetization which persists to unblocking temperatures of at least 650°C. Using a modified Thellier technique, they reported a paleointensity of 2 μT. Although this value may have been influenced by spurious remanence acquired during pretreatment with AF demagnetization, our results confirm the presence of an extremely stable (blocked to coercivities >290 mT) magnetization in the glassy matrix. We also found that this magnetization is largely unidirectional across mutually oriented subsamples. The cooling timescale of this rock (~1

Energy transfers in large-scale and small-scale dynamos

Science.gov (United States)

Samtaney, Ravi; Kumar, Rohit; Verma, Mahendra

2015-11-01

We present the energy transfers, mainly energy fluxes and shell-to-shell energy transfers in small-scale dynamo (SSD) and large-scale dynamo (LSD) using numerical simulations of MHD turbulence for Pm = 20 (SSD) and for Pm = 0.2 on 10243 grid. For SSD, we demonstrate that the magnetic energy growth is caused by nonlocal energy transfers from the large-scale or forcing-scale velocity field to small-scale magnetic field. The peak of these energy transfers move towards lower wavenumbers as dynamo evolves, which is the reason for the growth of the magnetic fields at the large scales. The energy transfers U2U (velocity to velocity) and B2B (magnetic to magnetic) are forward and local. For LSD, we show that the magnetic energy growth takes place via energy transfers from large-scale velocity field to large-scale magnetic field. We observe forward U2U and B2B energy flux, similar to SSD.

Impact of Convection on Surface Fluxes Observed During LASP/DYNAMO 2011

Science.gov (United States)

2014-12-01

20  Figure 8.  FFM maneuver used in the LASP/DYNAMO experiment (from Wang et al. 2013...Atmosphere Response Experiment DYNAMO Dynamics of Madden-Julian Oscillation EM electro-magnetic EO electro-optical FFM flight-level flux mapping FVS...level flux mapping ( FFM ) modules. Convection modules consisted of dropsonde cloud survey or radar convective element maneuver. Dropsonde modules

A Single Mode Study of a Quasi-Geostrophic Convection-Driven Dynamo Model

Science.gov (United States)

Plumley, M.; Calkins, M. A.; Julien, K. A.; Tobias, S.

2017-12-01

Planetary magnetic fields are thought to be the product of hydromagnetic dynamo action. For Earth, this process occurs within the convecting, turbulent and rapidly rotating outer core, where the dynamics are characterized by low Rossby, low magnetic Prandtl and high Rayleigh numbers. Progress in studying dynamos has been limited by current computing capabilities and the difficulties in replicating the extreme values that define this setting. Asymptotic models that embrace these extreme parameter values and enforce the dominant balance of geostrophy provide an option for the study of convective flows with actual relevance to geophysics. The quasi-geostrophic dynamo model (QGDM) is a multiscale, fully-nonlinear Cartesian dynamo model that is valid in the asymptotic limit of low Rossby number. We investigate the QGDM using a simplified class of solutions that consist of a single horizontal wavenumber which enforces a horizontal structure on the solutions. This single mode study is used to explore multiscale time stepping techniques and analyze the influence of the magnetic field on convection.

A basal magma ocean dynamo to explain the early lunar magnetic field

Science.gov (United States)

Scheinberg, Aaron L.; Soderlund, Krista M.; Elkins-Tanton, Linda T.

2018-06-01

The source of the ancient lunar magnetic field is an unsolved problem in the Moon's evolution. Theoretical work invoking a core dynamo has been unable to explain the magnitude of the observed field, falling instead one to two orders of magnitude below it. Since surface magnetic field strength is highly sensitive to the depth and size of the dynamo region, we instead hypothesize that the early lunar dynamo was driven by convection in a basal magma ocean formed from the final stages of an early lunar magma ocean; this material is expected to be dense, radioactive, and metalliferous. Here we use numerical convection models to predict the longevity and heat flow of such a basal magma ocean and use scaling laws to estimate the resulting magnetic field strength. We show that, if sufficiently electrically conducting, a magma ocean could have produced an early dynamo with surface fields consistent with the paleomagnetic observations.

MHD dynamo action in space plasmas

International Nuclear Information System (INIS)

Faelthammar, C.G.

1984-05-01

Electric currents are now recognized to play a major role in the physical process of the Earths magnetosphere as well as in distant astrophysical plasmas. In driving these currents MHD dynamos as well as generators of a thermoelectric nature are important. The primary source of power for the Earths magnetospheric process is the solar wind, which supplies a voltage of the order of 200 kV across the magnetosphere. The direction of the large-scale solar wind electric field varies of many different time scales. The power input to the magnetosphere is closely correlated with the direction of the large-scale solar wind electric field in such a fashion as to mimick the response of a half-wave rectifier with a down-to-dusk conduction direction. Behind this apparently simple response there are complex plasma physical processes that are still very incompletely understood. They are intimately related to auroras, magnetic storms, radiation belts and changes in magnetospheric plasma populations. Similar dynamo actions should occur at other planets having magnetospheres. Recent observations seem to indicate that part of the power input to the Earths magnetosphere comes through MHD dynamo action of a forced plasma flow inside the flanks of the magnetopause and may play a role in other parts of the magnetosphere, too. An example of a cosmical MHD connected to a solid load is the corotating plasma of Jupiters inner magnetosphere, sweeping past the plants inner satelites. In particular the electric currents thereby driven to and from the satellite Io have attracted considerable interest.(author)

Large-scale dynamo action due to α fluctuations in a linear shear flow

Science.gov (United States)

Sridhar, S.; Singh, Nishant K.

2014-12-01

We present a model of large-scale dynamo action in a shear flow that has stochastic, zero-mean fluctuations of the α parameter. This is based on a minimal extension of the Kraichnan-Moffatt model, to include a background linear shear and Galilean-invariant α-statistics. Using the first-order smoothing approximation we derive a linear integro-differential equation for the large-scale magnetic field, which is non-perturbative in the shearing rate S , and the α-correlation time τα . The white-noise case, τα = 0 , is solved exactly, and it is concluded that the necessary condition for dynamo action is identical to the Kraichnan-Moffatt model without shear; this is because white-noise does not allow for memory effects, whereas shear needs time to act. To explore memory effects we reduce the integro-differential equation to a partial differential equation, valid for slowly varying fields when τα is small but non-zero. Seeking exponential modal solutions, we solve the modal dispersion relation and obtain an explicit expression for the growth rate as a function of the six independent parameters of the problem. A non-zero τα gives rise to new physical scales, and dynamo action is completely different from the white-noise case; e.g. even weak α fluctuations can give rise to a dynamo. We argue that, at any wavenumber, both Moffatt drift and Shear always contribute to increasing the growth rate. Two examples are presented: (a) a Moffatt drift dynamo in the absence of shear and (b) a Shear dynamo in the absence of Moffatt drift.

Magnetic field dynamos and magnetically triggered flow instabilities

Science.gov (United States)

Stefani, F.; Albrecht, T.; Arlt, R.; Christen, M.; Gailitis, A.; Gellert, M.; Giesecke, A.; Goepfert, O.; Herault, J.; Kirillov, O. N.; Mamatsashvili, G.; Priede, J.; Rüdiger, G.; Seilmayer, M.; Tilgner, A.; Vogt, T.

2017-07-01

The project A2 of the LIMTECH Alliance aimed at a better understanding of those magnetohydrodynamic instabilities that are relevant for the generation and the action of cosmic magnetic fields. These comprise the hydromagnetic dynamo effect and various magnetically triggered flow instabilities, such as the magnetorotational instability and the Tayler instability. The project was intended to support the experimental capabilities to become available in the framework of the DREsden Sodium facility for DYNamo and thermohydraulic studies (DRESDYN). An associated starting grant was focused on the dimensioning of a liquid metal experiment on the newly found magnetic destabilization of rotating flows with positive shear. In this survey paper, the main results of these two projects are summarized.

Non-linear dynamo waves in an incompressible medium when the turbulence dissipative coefficients depend on temperature

Directory of Open Access Journals (Sweden)

A. D. Pataraya

1997-01-01

Full Text Available Non-linear α-ω; dynamo waves existing in an incompressible medium with the turbulence dissipative coefficients depending on temperature are studied in this paper. We investigate of α-ω solar non-linear dynamo waves when only the first harmonics of magnetic induction components are included. If we ignore the second harmonics in the non-linear equation, the turbulent magnetic diffusion coefficient increases together with the temperature, the coefficient of turbulent viscosity decreases, and for an interval of time the value of dynamo number is greater than 1. In these conditions a stationary solution of the non-linear equation for the dynamo wave's amplitude exists; meaning that the magnetic field is sufficiently excited. The amplitude of the dynamo waves oscillates and becomes stationary. Using these results we can explain the existence of Maunder's minimum.

A comprehensive view of solar-terrestrial relationships in terms of a chain of four dynamo-powered plasma acceleration processes

International Nuclear Information System (INIS)

Akasofu, S.-I.

1983-01-01

This paper emphasizes an effort to link processes which relate solar activity and magnetospheric disturbances in terms of energy transfer through a chain of four elements. In this view, each element is explicitly thought to be powered by a dynamo, namely the solar wind generation dynamo, the solar flare dynamo, the solar wind-magnetosphere dynamo and the aurora dynamo, respectively. Each dynamo powers a plasma acceleration process by the Lorentz force and the plasma flows thus generated are the solar wind, the flare-generated solar wind disturbance, the magnetospheric plasma convection and the ionospheric convection, respectively. Each plasma flow conveys the energy from one element to the next in the chain. Some of the kinetic energy of the photospheric plasma is eventually deposited in the polar ionosphere as heat energy. (author)

Is a deep one-cell meridional circulation essential for the flux transport solar dynamo?

International Nuclear Information System (INIS)

Hazra, Gopal; Karak, Bidya Binay; Choudhuri, Arnab Rai

2014-01-01

The solar activity cycle is successfully modeled by the flux transport dynamo, in which the meridional circulation of the Sun plays an important role. Most of the kinematic dynamo simulations assume a one-cell structure of the meridional circulation within the convection zone, with the equatorward return flow at its bottom. In view of the recent claims that the return flow occurs at a much shallower depth, we explore whether a meridional circulation with such a shallow return flow can still retain the attractive features of the flux transport dynamo (such as a proper butterfly diagram, the proper phase relation between the toroidal and poloidal fields). We consider additional cells of the meridional circulation below the shallow return flow—both the case of multiple cells radially stacked above one another and the case of more complicated cell patterns. As long as there is an equatorward flow in low latitudes at the bottom of the convection zone, we find that the solar behavior is approximately reproduced. However, if there is either no flow or a poleward flow at the bottom of the convection zone, then we cannot reproduce solar behavior. On making the turbulent diffusivity low, we still find periodic behavior, although the period of the cycle becomes unrealistically large. In addition, with a low diffusivity, we do not get the observed correlation between the polar field at the sunspot minimum and the strength of the next cycle, which is reproduced when diffusivity is high. On introducing radially downward pumping, we get a more reasonable period and more solar-like behavior even with low diffusivity.

Is a deep one-cell meridional circulation essential for the flux transport solar dynamo?

Energy Technology Data Exchange (ETDEWEB)

Hazra, Gopal; Karak, Bidya Binay; Choudhuri, Arnab Rai, E-mail: ghazra@physics.iisc.ernet.in [Department of Physics, Indian Institute of Science, Bangalore 560012 (India)

2014-02-20

The solar activity cycle is successfully modeled by the flux transport dynamo, in which the meridional circulation of the Sun plays an important role. Most of the kinematic dynamo simulations assume a one-cell structure of the meridional circulation within the convection zone, with the equatorward return flow at its bottom. In view of the recent claims that the return flow occurs at a much shallower depth, we explore whether a meridional circulation with such a shallow return flow can still retain the attractive features of the flux transport dynamo (such as a proper butterfly diagram, the proper phase relation between the toroidal and poloidal fields). We consider additional cells of the meridional circulation below the shallow return flow—both the case of multiple cells radially stacked above one another and the case of more complicated cell patterns. As long as there is an equatorward flow in low latitudes at the bottom of the convection zone, we find that the solar behavior is approximately reproduced. However, if there is either no flow or a poleward flow at the bottom of the convection zone, then we cannot reproduce solar behavior. On making the turbulent diffusivity low, we still find periodic behavior, although the period of the cycle becomes unrealistically large. In addition, with a low diffusivity, we do not get the observed correlation between the polar field at the sunspot minimum and the strength of the next cycle, which is reproduced when diffusivity is high. On introducing radially downward pumping, we get a more reasonable period and more solar-like behavior even with low diffusivity.

Instrumental Implementation of an Experiment to Demonstrate αω -dynamos in Accretion Disks

Science.gov (United States)

Si, Jiahe; Sonnenfeld, Richard; Colgate, Art; Li, Hui; Nornberg, Mark

2016-10-01

The New Mexico Liquid Metal αω -dynamo experiment is aimed to demonstrate a galactic dynamo. Our goal is to generate the ω-effect and α-effect by two semi-coherent flows in laboratory. Two coaxial cylinders are used to generate Taylor-Couette flows to simulate the differential rotation of accretion disks. Plumes induced by jets injected into the Couette flows are expected to produce helicities necessary for the α-effect. We have demonstrated an 8-fold poloidal-to-toroidal flux amplification from differential rotation (the ω-effect) by minimizing turbulence in our apparatus. To demonstrate the α-effect, the experimental apparatus is undergoing significant upgrade. We have constructed a helicity injection facility, and are also designing and testing a new data acquisition system capable of transmitting data in a high speed rotating frame. Additional magnetic field diagnostics will also be included. The upgrade is intended to answer the question of whether a self-sustaining αω -dynamo can be constructed with a realistic fluid flow field, as well as to obtain more details to understand dynamo action in highly turbulent Couette flow.

Simulations of Dynamo and Magnetorotational Instability in Madison Plasma Experiments and Astrophysical Disks

Energy Technology Data Exchange (ETDEWEB)

Ebrahimi, Fatima [Princeton Univ., NJ (United States). Dept. of Astrophysical Sciences

2018-02-22

Magnetic fields are observed to exist on all scales in many astrophysical sources such as stars, galaxies, and accretion discs. Understanding the origin of large scale magnetic fields, whereby the field emerges on spatial scales large compared to the fluctuations, has been a particularly long standing challenge. Our physics objective are: 1) what are the minimum ingredients for large-scale dynamo growth? 2) could a large-scale magnetic field grow out of turbulence and sustained despite the presence of dissipation? These questions are fundamental for understanding the large-scale dynamo in both laboratory and astrophysical plasmas. Here, we report major new findings in the area of Large-Scale Dynamo (magnetic field generation).

Laminar and Turbulent Dynamos in Chiral Magnetohydrodynamics. I. Theory

Energy Technology Data Exchange (ETDEWEB)

Rogachevskii, Igor; Kleeorin, Nathan [Department of Mechanical Engineering, Ben-Gurion University of the Negev, P.O. Box 653, Beer-Sheva 84105 (Israel); Ruchayskiy, Oleg [Discovery Center, Niels Bohr Institute, Blegdamsvej 17, DK-2100 Copenhagen (Denmark); Boyarsky, Alexey [Instituut-Lorentz for Theoretical Physics, Universiteit Leiden, Niels Bohrweg 2, 2333 CA Leiden (Netherlands); Fröhlich, Jürg [Institute of Theoretical Physics, ETH Hönggerberg, CH-8093 Zurich (Switzerland); Brandenburg, Axel; Schober, Jennifer, E-mail: gary@bgu.ac.il [Nordita, KTH Royal Institute of Technology and Stockholm University, Roslagstullsbacken 23, SE-10691 Stockholm (Sweden)

2017-09-10

The magnetohydrodynamic (MHD) description of plasmas with relativistic particles necessarily includes an additional new field, the chiral chemical potential associated with the axial charge (i.e., the number difference between right- and left-handed relativistic fermions). This chiral chemical potential gives rise to a contribution to the electric current density of the plasma ( chiral magnetic effect ). We present a self-consistent treatment of the chiral MHD equations , which include the back-reaction of the magnetic field on a chiral chemical potential and its interaction with the plasma velocity field. A number of novel phenomena are exhibited. First, we show that the chiral magnetic effect decreases the frequency of the Alfvén wave for incompressible flows, increases the frequencies of the Alfvén wave and of the fast magnetosonic wave for compressible flows, and decreases the frequency of the slow magnetosonic wave. Second, we show that, in addition to the well-known laminar chiral dynamo effect, which is not related to fluid motions, there is a dynamo caused by the joint action of velocity shear and chiral magnetic effect. In the presence of turbulence with vanishing mean kinetic helicity, the derived mean-field chiral MHD equations describe turbulent large-scale dynamos caused by the chiral alpha effect, which is dominant for large fluid and magnetic Reynolds numbers. The chiral alpha effect is due to an interaction of the chiral magnetic effect and fluctuations of the small-scale current produced by tangling magnetic fluctuations (which are generated by tangling of the large-scale magnetic field by sheared velocity fluctuations). These dynamo effects may have interesting consequences in the dynamics of the early universe, neutron stars, and the quark–gluon plasma.

Laminar and Turbulent Dynamos in Chiral Magnetohydrodynamics. I. Theory

International Nuclear Information System (INIS)

Rogachevskii, Igor; Kleeorin, Nathan; Ruchayskiy, Oleg; Boyarsky, Alexey; Fröhlich, Jürg; Brandenburg, Axel; Schober, Jennifer

2017-01-01

The magnetohydrodynamic (MHD) description of plasmas with relativistic particles necessarily includes an additional new field, the chiral chemical potential associated with the axial charge (i.e., the number difference between right- and left-handed relativistic fermions). This chiral chemical potential gives rise to a contribution to the electric current density of the plasma ( chiral magnetic effect ). We present a self-consistent treatment of the chiral MHD equations , which include the back-reaction of the magnetic field on a chiral chemical potential and its interaction with the plasma velocity field. A number of novel phenomena are exhibited. First, we show that the chiral magnetic effect decreases the frequency of the Alfvén wave for incompressible flows, increases the frequencies of the Alfvén wave and of the fast magnetosonic wave for compressible flows, and decreases the frequency of the slow magnetosonic wave. Second, we show that, in addition to the well-known laminar chiral dynamo effect, which is not related to fluid motions, there is a dynamo caused by the joint action of velocity shear and chiral magnetic effect. In the presence of turbulence with vanishing mean kinetic helicity, the derived mean-field chiral MHD equations describe turbulent large-scale dynamos caused by the chiral alpha effect, which is dominant for large fluid and magnetic Reynolds numbers. The chiral alpha effect is due to an interaction of the chiral magnetic effect and fluctuations of the small-scale current produced by tangling magnetic fluctuations (which are generated by tangling of the large-scale magnetic field by sheared velocity fluctuations). These dynamo effects may have interesting consequences in the dynamics of the early universe, neutron stars, and the quark–gluon plasma.

Sustainment dynamo reexamined: nonlocal electrical conductivity of plasma in a stochastic magnetic field

International Nuclear Information System (INIS)

Jacobson, A.R.; Moses, R.W.

1984-01-01

The plasma dynamo is both an intriguing and a practical concept. The intrigue derives from attempting to explain naturally occurring and man-made plasmas whose strong field-aligned currents j/sub parallel/ apparently disobey the most naive Ohm's law j/sub parallel/ = sigma/sub parallel/E/sub parallel/. The practical importance derives from the dynamo's role both in formation and in sustainment of reversed-field pinch (RFP) and Spheromak fusion plasmas. We will examine certain features of the documented quasi-steady discharges on ZT-40M, and RFP in apparent need of a sustainment dynamo. We will show that the tail electrons (which carry j/sub parallel/) are probably wandering (along stochastic B Vector-field lines) over much of the minor radius in one mean-free-path

Energy fluxes in helical magnetohydrodynamics and dynamo action

Indian Academy of Sciences (India)

Kinetic and magnetic helicities do not affect the renormalized parameters, ... Generation of magnetic field in plasma, usually referred to as 'dynamo', is one of the ..... energy fluxes for the inertial-range wave numbers where the same power.

The metastable dynamo model of stellar rotational evolution

International Nuclear Information System (INIS)

Brown, Timothy M.

2014-01-01

This paper introduces a new empirical model for the rotational evolution of Sun-like stars—those with surface convection zones and non-convective interior regions. Previous models do not match the morphology of observed (rotation period)-color diagrams, notably the existence of a relatively long-lived 'C-sequence' of fast rotators first identified by Barnes. This failure motivates the Metastable Dynamo Model (MDM) described here. The MDM posits that stars are born with their magnetic dynamos operating in a mode that couples very weakly to the stellar wind, so their (initially very short) rotation periods at first change little with time. At some point, this mode spontaneously and randomly changes to a strongly coupled mode, the transition occurring with a mass-dependent lifetime that is of the order of 100 Myr. I show that with this assumption, one can obtain good fits to observations of young clusters, particularly for ages of 150-200 Myr. Previous models and the MDM both give qualitative agreement with the morphology of the slower-rotating 'I-sequence' stars, but none of them have been shown to accurately reproduce the stellar-mass-dependent evolution of the I-sequence stars, especially for clusters older than a few hundred million years. I discuss observational experiments that can test aspects of the MDM, and speculate that the physics underlying the MDM may be related to other situations described in the literature, in which stellar dynamos may have a multi-modal character.

Feasible homopolar dynamo with sliding liquid-metal contacts

International Nuclear Information System (INIS)

Priede, Jānis; Avalos-Zúñiga, Raúl

2013-01-01

We present a feasible homopolar dynamo design consisting of a flat, multi-arm spiral coil, which is placed above a fast-spinning metal ring and connected to the latter by sliding liquid-metal electrical contacts. Using a simple, analytically solvable axisymmetric model, we determine the optimal design of such a setup. For small contact resistance, the lowest magnetic Reynolds number, Rm≈34.6, at which the dynamo can work, is attained at the optimal ratio of the outer and inner radii of the rings R i /R o ≈0.36 and the spiral pitch angle 54.7°. In a setup of two copper rings with the thickness of 3 cm, R i =10 cm and R o =30 cm, self-excitation of the magnetic field is expected at a critical rotation frequency around 10 Hz

A Study of Stochastic Resonance in the Periodically Forced Rikitake Dynamo

Directory of Open Access Journals (Sweden)

Chien-Chih Chen Chih-Yuan Tseng

2007-01-01

Full Text Available The geodynamo has widely been thought to be an intuitive and selfsustained model of the Earth¡¦s magnetic field. In this paper, we elucidate how a periodic signal could be embedded in the geomagnetic filed via the mechanism of stochastic resonance in a forced Rikitake dynamo. Based on the stochastic resonance observed in the periodically forced Rikitake dynamo, we thus suggest a common triggering for geomagnetic reversal and glacial events. Both kinds of catastrophes may result from the cyclic variation of the Earth¡¦s orbital eccentricity.

EFFECTS OF FOSSIL MAGNETIC FIELDS ON CONVECTIVE CORE DYNAMOS IN A-TYPE STARS

International Nuclear Information System (INIS)

Featherstone, Nicholas A.; Toomre, Juri; Browning, Matthew K.; Brun, Allan Sacha

2009-01-01

The vigorous magnetic dynamo action achieved within the convective cores of A-type stars may be influenced by fossil magnetic fields within their radiative envelopes. We study such effects through three-dimensional simulations that model the inner 30% by radius of a 2 M sun A-type star, capturing the convective core and a portion of the overlying radiative envelope within our computational domain. We employ the three-dimensional anelastic spherical harmonic code to model turbulent dynamics within a deep rotating spherical shell. The interaction between a fossil field and the core dynamo is examined by introducing a large-scale magnetic field into the radiative envelope of a mature A star dynamo simulation. We find that the inclusion of a twisted toroidal fossil field can lead to a remarkable transition in the core dynamo behavior. Namely, a super-equipartition state can be realized in which the magnetic energy built by dynamo action is 10-fold greater than the kinetic energy of the convection itself. Such strong-field states may suggest that the resulting Lorentz forces should seek to quench the flows, yet we have achieved super-equipartition dynamo action that persists for multiple diffusion times. This is achieved by the relative co-alignment of the flows and magnetic fields in much of the domain, along with some lateral displacements of the fastest flows from the strongest fields. Convection in the presence of such strong magnetic fields typically manifests as 4-6 cylindrical rolls aligned with the rotation axis, each possessing central axial flows that imbue the rolls with a helical nature. The roll system also possesses core-crossing flows that couple distant regions of the core. We find that the magnetic fields exhibit a comparable global topology with broad, continuous swathes of magnetic field linking opposite sides of the convective core. We have explored several poloidal and toroidal fossil field geometries, finding that a poloidal component is essential

Effect of metallic walls on dynamos generated by laminar boundary-driven flow in a spherical domain.

Science.gov (United States)

Guervilly, Céline; Wood, Toby S; Brummell, Nicholas H

2013-11-01

We present a numerical study of dynamo action in a conducting fluid encased in a metallic spherical shell. Motions in the fluid are driven by differential rotation of the outer metallic shell, which we refer to as "the wall." The two hemispheres of the wall are held in counter-rotation, producing a steady, axisymmetric interior flow consisting of differential rotation and a two-cell meridional circulation with radial inflow in the equatorial plane. From previous studies, this type of flow is known to maintain a stationary equatorial dipole by dynamo action if the magnetic Reynolds number is larger than about 300 and if the outer boundary is electrically insulating. We vary independently the thickness, electrical conductivity, and magnetic permeability of the wall to determine their effect on the dynamo action. The main results are the following: (a) Increasing the conductivity of the wall hinders the dynamo by allowing eddy currents within the wall, which are induced by the relative motion of the equatorial dipole field and the wall. This processes can be viewed as a skin effect or, equivalently, as the tearing apart of the dipole by the differential rotation of the wall, to which the field lines are anchored by high conductivity. (b) Increasing the magnetic permeability of the wall favors dynamo action by constraining the magnetic field lines in the fluid to be normal to the wall, thereby decoupling the fluid from any induction in the wall. (c) Decreasing the wall thickness limits the amplitude of the eddy currents, and is therefore favorable for dynamo action, provided that the wall is thinner than the skin depth. We explicitly demonstrate these effects of the wall properties on the dynamo field by deriving an effective boundary condition in the limit of vanishing wall thickness.

Anelastic spherical dynamos with radially variable electrical conductivity

Science.gov (United States)

Dietrich, W.; Jones, C. A.

2018-05-01

A series of numerical simulations of the dynamo process operating inside gas giant planets has been performed. We use an anelastic, fully nonlinear, three-dimensional, benchmarked MHD code to evolve the flow, entropy and magnetic field. Our models take into account the varying electrical conductivity, high in the ionised metallic hydrogen region, low in the molecular outer region. Our suite of electrical conductivity profiles ranges from Jupiter-like, where the outer hydrodynamic region is quite thin, to Saturn-like, where there is a thick non-conducting shell. The rapid rotation leads to the formation of two distinct dynamical regimes which are separated by a magnetic tangent cylinder - mTC. Outside the mTC there are strong zonal flows, where Reynolds stress balances turbulent viscosity, but inside the mTC Lorentz force reduces the zonal flow. The dynamic interaction between both regions induces meridional circulation. We find a rich diversity of magnetic field morphologies. There are Jupiter-like steady dipolar fields, and a belt of quadrupolar dominated dynamos spanning the range of models between Jupiter-like and Saturn-like conductivity profiles. This diversity may be linked to the appearance of reversed sign helicity in the metallic regions of our dynamos. With Saturn-like conductivity profiles we find models with dipolar magnetic fields, whose axisymmetric components resemble those of Saturn, and which oscillate on a very long time-scale. However, the non-axisymmetric field components of our models are at least ten times larger than those of Saturn, possibly due to the absence of any stably stratified layer.

Ion heating and MHD dynamo fluctuations in the reversed field pinch

International Nuclear Information System (INIS)

Scime, E.; Hokin, S.; Watts, C.; Mattor, N.

1992-01-01

Ion temperature measurements, time resolved to 10 μs, have been made in the Madison Symmetric Torus reversed-field pinch with a five channel charge exchange analyzer. The ion temperature, T i ∼ 200 eV for I = 350 kA, increases by as much as 100% during discrete dynamo bursts in MST discharges. Magnetic field fluctuations in the range 0.5--5 MHz were also measured. Structure in the fluctuation frequency spectrum at the ion cyclotron frequency appears as the bursts terminate, suggesting that the mechanism of ion heating involves the dissipation of dynamo fluctuations at ion gyro-orbit scales

IMPACT OF A REALISTIC DENSITY STRATIFICATION ON A SIMPLE SOLAR DYNAMO CALCULATION

Energy Technology Data Exchange (ETDEWEB)

Cardoso, Elisa; Lopes, Ilidio, E-mail: ilidio.lopes@ist.utl.pt [Centro Multidisciplinar de Astrofisica, Instituto Superior Tecnico, Av. Rovisco Pais, 1049-001 Lisboa (Portugal)

2012-09-20

In our Sun, the magnetic cycle is driven by the dynamo action occurring inside the convection zone, beneath the surface. Rotation couples with plasma turbulent motions to produce organized magnetic fields that erupt at the surface and undergo relatively regular cycles of polarity reversal. Among others, the axisymmetric dynamo models have been proved to be a quite useful tool to understand the dynamical processes responsible for the evolution of the solar magnetic cycle and the formation of the sunspots. Here, we discuss the role played by the radial density stratification on the critical layers of the Sun on the solar dynamo. The current view is that a polytropic description of the density stratification from beneath the tachocline region up to the Sun's surface is sufficient for the current precision of axisymmetric dynamo models. In this work, by using an up-to-date density profile obtained from a standard solar model, which is itself consistent with helioseismic data, we show that the detailed peculiarities of the density in critical regions of the Sun's interior, such as the tachocline, the base of the convection zone, the layers of partial ionization of hydrogen and helium, and the super-adiabatic layer, play a non-negligible role on the evolution of the solar magnetic cycle. Furthermore, we found that the chemical composition of the solar model plays a minor role in the formation and evolution of the solar magnetic cycle.

IMPACT OF A REALISTIC DENSITY STRATIFICATION ON A SIMPLE SOLAR DYNAMO CALCULATION

International Nuclear Information System (INIS)

Cardoso, Elisa; Lopes, Ilídio

2012-01-01

In our Sun, the magnetic cycle is driven by the dynamo action occurring inside the convection zone, beneath the surface. Rotation couples with plasma turbulent motions to produce organized magnetic fields that erupt at the surface and undergo relatively regular cycles of polarity reversal. Among others, the axisymmetric dynamo models have been proved to be a quite useful tool to understand the dynamical processes responsible for the evolution of the solar magnetic cycle and the formation of the sunspots. Here, we discuss the role played by the radial density stratification on the critical layers of the Sun on the solar dynamo. The current view is that a polytropic description of the density stratification from beneath the tachocline region up to the Sun's surface is sufficient for the current precision of axisymmetric dynamo models. In this work, by using an up-to-date density profile obtained from a standard solar model, which is itself consistent with helioseismic data, we show that the detailed peculiarities of the density in critical regions of the Sun's interior, such as the tachocline, the base of the convection zone, the layers of partial ionization of hydrogen and helium, and the super-adiabatic layer, play a non-negligible role on the evolution of the solar magnetic cycle. Furthermore, we found that the chemical composition of the solar model plays a minor role in the formation and evolution of the solar magnetic cycle.

Steady-state dynamo and current drive in a nonuniform bounded plasma

International Nuclear Information System (INIS)

Mett, R.R.; Taylor, J.B.

1991-03-01

Current drive due to helicity injection and dynamo effect are examined in an inhomogeneous bounded plasma. Averaged over a magnetic surface, there is in general no dynamo effect independent of resistivity -- contrary to the results found previously for an unbounded plasma. The dynamo field is calculated explicitly for an incompressible visco-resistive fluid in the plane-slab model. In accord with our general conclusion, outside the Alfven resonant layer it is proportional to the resistivity. Within the resonant layer there is a contribution which is enhanced, relative to its value outside the layer, by a factor (ωa 2 /(η + ν)), where ω is the wave frequency, a the plasma radius, η the magnetic diffusivity, and ν the kinematic viscosity. However, this contribution vanishes when integrated across the layer. The average field in the layer is enhanced by factor (ωa 2 /(η + ν)) 2/3 and is proportional to the shear in the magnetic field and the cube root of the gradient of the Alfven speed. These results are interpreted in terms of helicity balance, and reconciled with the infinite medium calculations. 15 refs

BABCOCK–LEIGHTON SOLAR DYNAMO: THE ROLE OF DOWNWARD PUMPING AND THE EQUATORWARD PROPAGATION OF ACTIVITY

International Nuclear Information System (INIS)

Karak, Bidya Binay; Cameron, Robert

2016-01-01

The key elements of the Babcock–Leighton dynamos are the generation of poloidal field through decay and the dispersal of tilted bipolar active regions and the generation of toroidal field through the observed differential rotation. These models are traditionally known as flux transport dynamo models as the equatorward propagations of the butterfly wings in these models are produced due to an equatorward flow at the bottom of the convection zone. Here we investigate the role of downward magnetic pumping near the surface using a kinematic Babcock–Leighton model. We find that the pumping causes the poloidal field to become predominately radial in the near-surface shear layer, which allows the negative radial shear to effectively act on the radial field to produce a toroidal field. We observe a clear equatorward migration of the toroidal field at low latitudes as a consequence of the dynamo wave even when there is no meridional flow in the deep convection zone. Both the dynamo wave and the flux transport type solutions are thus able to reproduce some of the observed features of the solar cycle including the 11-year periodicity. The main difference between the two types of solutions is the strength of the Babcock–Leighton source required to produce the dynamo action. A second consequence of the magnetic pumping is that it suppresses the diffusion of fields through the surface, which helps to allow an 11-year cycle at (moderately) larger values of magnetic diffusivity than have previously been used.

BABCOCK–LEIGHTON SOLAR DYNAMO: THE ROLE OF DOWNWARD PUMPING AND THE EQUATORWARD PROPAGATION OF ACTIVITY

Energy Technology Data Exchange (ETDEWEB)

Karak, Bidya Binay; Cameron, Robert, E-mail: bkarak@ucar.edu [Max-Planck-Institut für Sonnensystemforschung, Justus-von-Liebig-Weg 3, D-37077 Göttingen (Germany)

2016-11-20

The key elements of the Babcock–Leighton dynamos are the generation of poloidal field through decay and the dispersal of tilted bipolar active regions and the generation of toroidal field through the observed differential rotation. These models are traditionally known as flux transport dynamo models as the equatorward propagations of the butterfly wings in these models are produced due to an equatorward flow at the bottom of the convection zone. Here we investigate the role of downward magnetic pumping near the surface using a kinematic Babcock–Leighton model. We find that the pumping causes the poloidal field to become predominately radial in the near-surface shear layer, which allows the negative radial shear to effectively act on the radial field to produce a toroidal field. We observe a clear equatorward migration of the toroidal field at low latitudes as a consequence of the dynamo wave even when there is no meridional flow in the deep convection zone. Both the dynamo wave and the flux transport type solutions are thus able to reproduce some of the observed features of the solar cycle including the 11-year periodicity. The main difference between the two types of solutions is the strength of the Babcock–Leighton source required to produce the dynamo action. A second consequence of the magnetic pumping is that it suppresses the diffusion of fields through the surface, which helps to allow an 11-year cycle at (moderately) larger values of magnetic diffusivity than have previously been used.

Energy transfers in dynamos with small magnetic Prandtl numbers

KAUST Repository

Kumar, Rohit; Verma, Mahendra K.; Samtaney, Ravi

2015-01-01

We perform numerical simulation of dynamo with magnetic Prandtl number Pm = 0.2 on 10243 grid, and compute the energy fluxes and the shell-to-shell energy transfers. These computations indicate that the magnetic energy growth takes place mainly due

Dynamo Scaling Laws for Uranus and Neptune: The Role of Convective Shell Thickness on Dipolarity

Science.gov (United States)

Stanley, Sabine; Yunsheng Tian, Bob

2017-10-01

Previous dynamo scaling law studies (Christensen and Aubert, 2006) have demonstrated that the morphology of a planet’s magnetic field is determined by the local Rossby number (Ro_l): a non-dimensional diagnostic variable that quantifies the ratio of inertial forces to Coriolis forces on the average length scale of the flow. Dynamos with Ro_l ~ 0.1 produce multipolar magnetic fields. Scaling studies have also determined the dependence of the local Rossby number on non-dimensional parameters governing the system - specifically the Ekman, Prandtl, magnetic Prandtl and flux-based Rayleigh numbers (Olson and Christensen, 2006). When these scaling laws are applied to the planets, it appears that Uranus and Neptune should have dipole-dominated fields, contrary to observations. However, those scaling laws were derived using the specific convective shell thickness of the Earth’s core. Here we investigate the role of convective shell thickness on dynamo scaling laws. We find that the local Rossby number depends exponentially on the convective shell thickness. Including this new dependence on convective shell thickness, we find that the dynamo scaling laws now predict that Uranus and Neptune reside deeply in the multipolar regime, thereby resolving the previous contradiction with observations.

MAGNETIC QUENCHING OF TURBULENT DIFFUSIVITY: RECONCILING MIXING-LENGTH THEORY ESTIMATES WITH KINEMATIC DYNAMO MODELS OF THE SOLAR CYCLE

International Nuclear Information System (INIS)

Munoz-Jaramillo, Andres; Martens, Petrus C. H.; Nandy, Dibyendu

2011-01-01

The turbulent magnetic diffusivity in the solar convection zone is one of the most poorly constrained ingredients of mean-field dynamo models. This lack of constraint has previously led to controversy regarding the most appropriate set of parameters, as different assumptions on the value of turbulent diffusivity lead to radically different solar cycle predictions. Typically, the dynamo community uses double-step diffusivity profiles characterized by low values of diffusivity in the bulk of the convection zone. However, these low diffusivity values are not consistent with theoretical estimates based on mixing-length theory, which suggest much higher values for turbulent diffusivity. To make matters worse, kinematic dynamo simulations cannot yield sustainable magnetic cycles using these theoretical estimates. In this work, we show that magnetic cycles become viable if we combine the theoretically estimated diffusivity profile with magnetic quenching of the diffusivity. Furthermore, we find that the main features of this solution can be reproduced by a dynamo simulation using a prescribed (kinematic) diffusivity profile that is based on the spatiotemporal geometric average of the dynamically quenched diffusivity. This bridges the gap between dynamically quenched and kinematic dynamo models, supporting their usage as viable tools for understanding the solar magnetic cycle.

Boundary effects on the MHD dynamo in laboratory plasmas

International Nuclear Information System (INIS)

Ho, Y.L.; Prager, S.C.

1989-07-01

In recent laboratory experiments, a dynamo-like mechanism has been demonstrated in which a portion of the axisymmetric component of the magnetic field is believed to be sustained by 3D spatial fluctuations in the field and flow. With a conducting shell at the plasma surface, past MHD computation shows that sustainment arises from fluctuations which cause magnetic reconnection. If the conducting wall is retracted from the plasma surface, the fluctuations are amplified and the dynamo sustainment is still active for the times studied, but an increased energy input to the plasma is required through the applied electric field. The retraction of the conducting wall enhances the helicity dissipation rate by the intersection of the fields with the resistive surface which bounds the plasma. This enhanced helicity dissipation is balanced by the helicity injection that accompanies the increased applied electric field. 17 refs., 7 figs., 1 tab

Time-resolved observation of discrete and continuous MHD dynamo in the reversed-field pinch edge

International Nuclear Information System (INIS)

Ji, H.; Almagri, A.F.; Prager, S.C.; Sarff, J.S.

1994-01-01

We report the first experimental verification of the MHD dynamo in the RFP. A burst of magnetohydrodynamic (MHD) dynamo electric field is observed during the sawtooth crash, followed by an increase in the local parallel current in the MST RFP edge. By measuring each term, the parallel MHD mean-field Ohm's law is observed to hold within experimental error bars both between and during sawtooth crashes

Sleuthing the Dynamo: the Final Frontier

Science.gov (United States)

Ayres, Thomas

1996-07-01

Innovative technologies are opening new windows into the Sun;from its hidden interior to the far reaches of its turbulentouter envelope: rare-earth detectors for solar neutrinos; theGONG project for helioseismology; SOHO for high-resolutionXUV spectroscopy, and YOHKOH for coronal X-ray imaging. Atthe same time, a fleet of space observatories--ROSAT, EUVE,ASCA, and HST itself--are providing unprecedented views ofthe vacuum-UV and X-ray emissions of stars in our Galacticneighborhood. These seemingly unrelated developments are infact deeply connected. A central issue of solar-stellarphysics is the nature and origin of magnetic activity: thelink between the interior dynamics of a late-type star and theviolent state of its outermost coronal layers. As solarphysicists are unlocking the secrets of the hydromagneticDynamo deep inside the Sun, we and others have beendocumenting the early evolution of the Dynamo and itsassociated external gas-dynamic activity. In particular, wehave obtained HST/FOS spectra of ten young solar-type starsin three nearby open clusters--the Hyades, Pleiades, andAlpha Persei--ranging in age from 50 Myr to 600 Myr. We havesupplemented the HST spectroscopy with deep ROSAT pointings, and ground-based studies. Here, we will continue the HSTside of our project by obtaining FUV spectra of two AlphaPerseids from our original program (but not yet observed),and high-S/N follow-up measurements of the hyperactive PleiadH II 314.

Saturation of the turbulent dynamo.

Science.gov (United States)

Schober, J; Schleicher, D R G; Federrath, C; Bovino, S; Klessen, R S

2015-08-01

The origin of strong magnetic fields in the Universe can be explained by amplifying weak seed fields via turbulent motions on small spatial scales and subsequently transporting the magnetic energy to larger scales. This process is known as the turbulent dynamo and depends on the properties of turbulence, i.e., on the hydrodynamical Reynolds number and the compressibility of the gas, and on the magnetic diffusivity. While we know the growth rate of the magnetic energy in the linear regime, the saturation level, i.e., the ratio of magnetic energy to turbulent kinetic energy that can be reached, is not known from analytical calculations. In this paper we present a scale-dependent saturation model based on an effective turbulent resistivity which is determined by the turnover time scale of turbulent eddies and the magnetic energy density. The magnetic resistivity increases compared to the Spitzer value and the effective scale on which the magnetic energy spectrum is at its maximum moves to larger spatial scales. This process ends when the peak reaches a characteristic wave number k☆ which is determined by the critical magnetic Reynolds number. The saturation level of the dynamo also depends on the type of turbulence and differs for the limits of large and small magnetic Prandtl numbers Pm. With our model we find saturation levels between 43.8% and 1.3% for Pm≫1 and between 2.43% and 0.135% for Pm≪1, where the higher values refer to incompressible turbulence and the lower ones to highly compressible turbulence.

Magnetic fluctuation induced transport and edge dynamo measurements in the MST reversed-field pinch

International Nuclear Information System (INIS)

Hokin, S.; Fiksel, G.; Ji, H.

1994-09-01

Probe measurements in MST indicate that RFP particle and energy loss is governed by magnetic fluctuations inside r/a = 0.8, with energy carried out convectively by superthermal electrons. The radial loss rate is lower than the Rechester-Rosenbluth level, presumably due to the establishment of a restraining ambipolar potential. Several aspects of these measurements contradict the Kinetic Dynamo Theory, while the MHD dynamo EMF is measured to be large enough to drive the edge current carried by these superthermal electrons

Large-scale dynamo of accretion disks around supermassive nonrotating black holes

Directory of Open Access Journals (Sweden)

Poplavsky A.L.

2006-01-01

Full Text Available In this paper one presents an analytical model of accretion disk magnetosphere dynamics around supermassive nonrotating black holes in the centers of active galactic nuclei. Based on general relativistic equations of magneto hydrodynamics, the nonstationary solutions for time-dependent dynamo action in the accretion disks, spatial and temporal distribution of magnetic field are found. It is shown that there are two distinct stages of dynamo process: the transient and the steady-state regimes, the induction of magnetic field at t > 6:6665 x 1011GM/c3 s becomes stationary, magnetic field is located near the innermost stable circular orbit, and its value rises up to ~ 105 G. Applications of such systems with nonrotating black holes in real active galactic nuclei are discussed.

Magnetic and velocity fields in a dynamo operating at extremely small Ekman and magnetic Prandtl numbers

Science.gov (United States)

Šimkanin, Ján; Kyselica, Juraj

2017-12-01

Numerical simulations of the geodynamo are becoming more realistic because of advances in computer technology. Here, the geodynamo model is investigated numerically at the extremely low Ekman and magnetic Prandtl numbers using the PARODY dynamo code. These parameters are more realistic than those used in previous numerical studies of the geodynamo. Our model is based on the Boussinesq approximation and the temperature gradient between upper and lower boundaries is a source of convection. This study attempts to answer the question how realistic the geodynamo models are. Numerical results show that our dynamo belongs to the strong-field dynamos. The generated magnetic field is dipolar and large-scale while convection is small-scale and sheet-like flows (plumes) are preferred to a columnar convection. Scales of magnetic and velocity fields are separated, which enables hydromagnetic dynamos to maintain the magnetic field at the low magnetic Prandtl numbers. The inner core rotation rate is lower than that in previous geodynamo models. On the other hand, dimensional magnitudes of velocity and magnetic fields and those of the magnetic and viscous dissipation are larger than those expected in the Earth's core due to our parameter range chosen.

A NEW SIMPLE DYNAMO MODEL FOR STELLAR ACTIVITY CYCLE

Energy Technology Data Exchange (ETDEWEB)

Yokoi, N.; Hamba, F. [Institute of Industrial Science, University of Tokyo, Tokyo 153-8505 (Japan); Schmitt, D. [Max-Planck Institut für Sonnensystemforschung, Göttingen D-37077 (Germany); Pipin, V., E-mail: nobyokoi@iis.u-tokyo.ac.jp [Institute of Solar–Terrestrial Physics, Russian Academy of Science, Irkutsk 664033 (Russian Federation)

2016-06-20

A new simple dynamo model for stellar activity cycle is proposed. By considering an inhomogeneous flow effect on turbulence, it is shown that turbulent cross helicity (velocity–magnetic-field correlation) enters the expression of turbulent electromotive force as the coupling coefficient for the mean absolute vorticity. This makes the present model different from the current α –Ω-type models in two main ways. First, in addition to the usual helicity ( α ) and turbulent magnetic diffusivity ( β ) effects, we consider the cross-helicity effect as a key ingredient of the dynamo process. Second, the spatiotemporal evolution of cross helicity is solved simultaneously with the mean magnetic fields. The basic scenario is as follows. In the presence of turbulent cross helicity, the toroidal field is induced by the toroidal rotation. Then, as in usual models, the α effect generates the poloidal field from the toroidal one. This induced poloidal field produces a turbulent cross helicity whose sign is opposite to the original one (negative production). With this cross helicity of the reversed sign, a reversal in field configuration starts. Eigenvalue analyses of the simplest possible model give a butterfly diagram, which confirms the above scenario and the equatorward migrations, the phase relationship between the cross helicity and magnetic fields. These results suggest that the oscillation of the turbulent cross helicity is a key for the activity cycle. The reversal of the cross helicity is not the result of the magnetic-field reversal, but the cause of the latter. This new model is expected to open up the possibility of the mean-field or turbulence closure dynamo approaches.

Latitudinal profile of the ionospheric disturbance dynamo magnetic signature: comparison with the DP2 magnetic disturbance

Directory of Open Access Journals (Sweden)

K. Z. Zaka

2009-09-01

Full Text Available During magnetic storms, the auroral electrojets intensification affects the thermospheric circulation on a global scale. This process which leads to electric field and current disturbance at middle and low latitudes, on the quiet day after the end of a storm, has been attributed to the ionospheric disturbance dynamo (Ddyn. The magnetic field disturbance observed as a result of this process is the reduction of the H component amplitude in the equatorial region which constitutes the main characteristic of the ionospheric disturbance dynamo process, associated with a westward electric current flow. The latitudinal profile of the Ddyn disturbance dynamo magnetic signature exhibits an eastward current at mid latitudes and a westward one at low latitudes with a substantial amplification at the magnetic equator. Such current flow reveals an "anti-Sq" system established between the mid latitudes and the equatorial region and opposes the normal Sq current vortex. However, the localization of the eastward current and consequently the position and the extent of the "anti-Sq" current vortex changes from one storm to another. Indeed, for a strong magnetic storm, the eastward current is well established at mid latitudes about 45° N and for a weak magnetic storm, the eastward current is established toward the high latitudes (about 60° N, near the Joule heating region, resulting in a large "anti-Sq" current cell. The latitudinal profile of the Ddyn disturbance as well as the magnetic disturbance DP2 generated by the mechanism of prompt penetration of the magnetospheric convection electric field in general, show a weak disturbance at the low latitudes with a substantial amplification at the magnetic equator. Due to the intensity of the storm, the magnitude of the DP2 appears higher than the Ddyn over the American and Asian sector contrary to the African sector.

Nonlinear quenching of current fluctuations in a self-exciting homopolar dynamo

Science.gov (United States)

Hide, R.

In the interpretation of geomagnetic polarity reversals with their highly variable frequency over geological time it is necessary, as with other irregularly fluctuating geophysical phenomena, to consider the relative importance of forced contributions associated with changing boundary conditions and of free contributions characteristic of the behaviour of nonlinear systems operating under fixed boundary conditions. New evidence -albeit indirect- in favour of the likely predominance of forced contributions is provided by the discovery reported here of the possibility of complete quenching by nonlineax effects of current fluctuations in a self-exciting homopolar dynamo with its single Faraday disk driven into rotation with angular speed y(τ) (where τ denotes time) by a steady applied couple. The armature of an electric motor connected in series with the coil of the dynamo is driven into rotation' with angular speed z(τ) by a torque xf (x) due to Lorentz forces associated with the electric current x(τ) in the system (just as certain parts of the spectrum of eddies within the liquid outer core are generated largely by Lorentz forces associated with currents generated by the self-exciting magnetohydrodynamic (MHD) geodynamo). The discovery is based on bifurcation analysis supported by computational studies of the following (mathematically novel) autonomous set of nonlinear ordinary differential equations: dx/dt = x(y - 1) - βzf(x), dy/dt = α(1 - x²) - κy, dz/dt = xf (x) -λz, where f (x) = 1 - ɛ + ɛσx, in cases when the dimensionless parameters (α, β, κ, λ, σ) are all positive and 0 ≤ ɛ ≤ 1. Within those regions of (α, β, κ, λ, σ) parameter space where the applied couple, as measured by α, is strong enough for persistent dynamo action (i.e. x ≠ 0) to occur at all, there are in general extensive regions where x(τ) exhibits large amplitude regular or irregular (chaotic) fluctuations. But these fluctuating régimes shrink in size as increases

Degenerate Hopf bifurcation in a self-exciting Faraday disc dynamo

Indian Academy of Sciences (India)

Weiquan Pan

2017-05-31

May 31, 2017 ... Recently, self-exciting Faraday disk dynamo is also a topic of con- cern [16–20]. ..... Hopf bifurcation. (a) Projected on the x–z plane and (b) pro- ... Key Lab of Com- plex System Optimization and Big Data Processing. (No.

Solar Internal Rotation and Dynamo Waves: A Two Dimensional ...

Indian Academy of Sciences (India)

tribpo

Solar Internal Rotation and Dynamo Waves: A Two Dimensional. Asymptotic Solution in the Convection Zone ... We calculate here a spatial 2 D structure of the mean magnetic field, adopting real profiles of the solar internal ... of the asymptotic solution in low (middle) and high (right panel) latitudes. field is shifted towards the ...

An update of Leighton's solar dynamo model

Science.gov (United States)

Cameron, R. H.; Schüssler, M.

2017-03-01

In 1969, Leighton developed a quasi-1D mathematical model of the solar dynamo, building upon the phenomenological scenario of Babcock published in 1961. Here we present a modification and extension of Leighton's model. Using the axisymmetric component (longitudinal average) of the magnetic field, we consider the radial field component at the solar surface and the radially integrated toroidal magnetic flux in the convection zone, both as functions of latitude. No assumptions are made with regard to the radial location of the toroidal flux. The model includes the effects of (I) turbulent diffusion at the surface and in the convection zone; (II) poleward meridional flow at the surface and an equatorward return flow affecting the toroidal flux; (III) latitudinal differential rotation and the near-surface layer of radial rotational shear; (iv) downward convective pumping of magnetic flux in the shear layer; and (v) flux emergence in the form of tilted bipolar magnetic regions treated as a source term for the radial surface field. While the parameters relevant for the transport of the surface field are taken from observations, the model condenses the unknown properties of magnetic field and flow in the convection zone into a few free parameters (turbulent diffusivity, effective return flow, amplitude of the source term, and a parameter describing the effective radial shear). Comparison with the results of 2D flux transport dynamo codes shows that the model captures the essential features of these simulations. We make use of the computational efficiency of the model to carry out an extended parameter study. We cover an extended domain of the 4D parameter space and identify the parameter ranges that provide solar-like solutions. Dipole parity is always preferred and solutions with periods around 22 yr and a correct phase difference between flux emergence in low latitudes and the strength of the polar fields are found for a return flow speed around 2 m s-1, turbulent

Helicity--vorticity turbulent pumping of magnetic fields in the solar dynamo

OpenAIRE

Pipin, V. V.

2012-01-01

The interaction of helical convective motions and differential rotation in the solar convection zone results in turbulent drift of a large-scale magnetic field. We discuss the pumping mechanism and its impact on the solar dynamo.

The Dynamo package for tomography and subtomogram averaging: components for MATLAB, GPU computing and EC2 Amazon Web Services.

Science.gov (United States)

Castaño-Díez, Daniel

2017-06-01

Dynamo is a package for the processing of tomographic data. As a tool for subtomogram averaging, it includes different alignment and classification strategies. Furthermore, its data-management module allows experiments to be organized in groups of tomograms, while offering specialized three-dimensional tomographic browsers that facilitate visualization, location of regions of interest, modelling and particle extraction in complex geometries. Here, a technical description of the package is presented, focusing on its diverse strategies for optimizing computing performance. Dynamo is built upon mbtools (middle layer toolbox), a general-purpose MATLAB library for object-oriented scientific programming specifically developed to underpin Dynamo but usable as an independent tool. Its structure intertwines a flexible MATLAB codebase with precompiled C++ functions that carry the burden of numerically intensive operations. The package can be delivered as a precompiled standalone ready for execution without a MATLAB license. Multicore parallelization on a single node is directly inherited from the high-level parallelization engine provided for MATLAB, automatically imparting a balanced workload among the threads in computationally intense tasks such as alignment and classification, but also in logistic-oriented tasks such as tomogram binning and particle extraction. Dynamo supports the use of graphical processing units (GPUs), yielding considerable speedup factors both for native Dynamo procedures (such as the numerically intensive subtomogram alignment) and procedures defined by the user through its MATLAB-based GPU library for three-dimensional operations. Cloud-based virtual computing environments supplied with a pre-installed version of Dynamo can be publicly accessed through the Amazon Elastic Compute Cloud (EC2), enabling users to rent GPU computing time on a pay-as-you-go basis, thus avoiding upfront investments in hardware and longterm software maintenance.

Ion heating and MHD dynamo fluctuations in the reversed field pinch

International Nuclear Information System (INIS)

Scime, E.E.

1992-05-01

Ion temperature measurements, time resolved to 10 μs, have been made in the Madison Symmetric Torus (MST) reversed field pinch (RFP) with a five channel charge exchange analyzer. The characteristic anomalously high ion temperature of RFP discharges has been observed in the MST. The evolution of the ion and electron temperature, as well as density and charge exchange power loss, were measured for a series of reproducible discharges. The ion heating expected from collisional processes with the electrons is calculated and shown too small to explain the measured ion temperatures. The charge exchange determined ion temperature is also compared to measurements of the thermally broadened CV 227.1 nm line. The ion temperature, T i ∼ 250 eV for I = 360 kA, increases by more than 100% during discrete dynamo bursts in MST discharges. Magnetic field fluctuations in the range 0.5 endash 5 MHz were also measured during the dynamo bursts. Structure in the fluctuation frequency spectrum at the ion cyclotron frequency appears as the bursts terminate, suggesting that the mechanism of ion heating involves the dissipation of dynamo fluctuations at ion cyclotron frequencies. Theoretical models for ion heating are reviewed and discussed in light of the experimental results. Similar electron heating mechanisms may be responsible for the discrepancy between measured and expected loop voltages in the RFP. The electrons, as well as the ions, may be heated by turbulent mechanisms, and a RFP energy budget including such phenomena is described

King Lear Reveals the Tragic Pattern of Shakespeare

Directory of Open Access Journals (Sweden)

Salim Eflih Al-Ibia

2017-04-01

Full Text Available Rather than focusing on the obvious traditions of evaluating Shakespearean tragic heroes, this paper presents a groundbreaking approach to unfold the pattern William Shakespeare follows as he designed his unique characters. This pattern applies to most, if not all, Shakespearean tragic heroes. I argue that Shakespeare himself reveals a great portion of this pattern on the tongue of Lear as the latter disowns Goneril and Regan promising to have “such revenges on [them] both” in King Lear. Lear’s threats bestow four unique aspects that apply not only to his character but they also apply to Shakespearean tragic heroes. Lear’s speech tells us that he is determined to have an awful type of revenge on his daughters. However, the very same speech tells us that he seems uncertain about the method through which he should carry out this revenge. Lear does not express any type of remorse as he pursues his vengeful plans nor should he aim at amnesty. He also admits his own madness as he closes his revealing speech. This research develops these facts about Lear to unfold the unique pattern Shakespeare follows as he portrayed his major tragic figures. This pattern is examined, described and analyzed in King Lear, Othello, and Hamlet. We will find out that the pattern suggested in this study helps us better understand Shakespeare’s tragedies and enables us to provide better explanations for some controversial scenes in the tragedies discussed.

New computation results for the solar dynamo

International Nuclear Information System (INIS)

Csada, I.K.

1983-01-01

The analytical solution to the solar dynamo equation leads to a relatively simple algorythm for the computation in terms of kinematic models. The internal and external velocities taken to be in the form of axisymmetric meridional circulation and differential rotation, respectively. Pure radial expanding motions in the corona are also taken into consideration. Numerical results are presented in terms of the velocity parameters for the period of field reversal, decay time, magnitudes and phases of the first four multipoles. (author)

A PROPOSED PARADIGM FOR SOLAR CYCLE DYNAMICS MEDIATED VIA TURBULENT PUMPING OF MAGNETIC FLUX IN BABCOCK–LEIGHTON-TYPE SOLAR DYNAMOS

Energy Technology Data Exchange (ETDEWEB)

Hazra, Soumitra; Nandy, Dibyendu [Department of Physical Sciences, Indian Institute of Science Education and Research, Kolkata (India)

2016-11-20

At present, the Babcock–Leighton flux transport solar dynamo models appear to be the most promising models for explaining diverse observational aspects of the sunspot cycle. The success of these flux transport dynamo models is largely dependent upon a single-cell meridional circulation with a deep equatorward component at the base of the Sun’s convection zone. However, recent observations suggest that the meridional flow may in fact be very shallow (confined to the top 10% of the Sun) and more complex than previously thought. Taken together, these observations raise serious concerns on the validity of the flux transport paradigm. By accounting for the turbulent pumping of magnetic flux, as evidenced in magnetohydrodynamic simulations of solar convection, we demonstrate that flux transport dynamo models can generate solar-like magnetic cycles even if the meridional flow is shallow. Solar-like periodic reversals are recovered even when meridional circulation is altogether absent. However, in this case, the solar surface magnetic field dynamics does not extend all the way to the polar regions. Very importantly, our results demonstrate that the Parker–Yoshimura sign rule for dynamo wave propagation can be circumvented in Babcock–Leighton dynamo models by the latitudinal component of turbulent pumping, which can generate equatorward propagating sunspot belts in the absence of a deep, equatorward meridional flow. We also show that variations in turbulent pumping coefficients can modulate the solar cycle amplitude and periodicity. Our results suggest the viability of an alternate magnetic flux transport paradigm—mediated via turbulent pumping—for sustaining solar-stellar dynamo action.

A PROPOSED PARADIGM FOR SOLAR CYCLE DYNAMICS MEDIATED VIA TURBULENT PUMPING OF MAGNETIC FLUX IN BABCOCK–LEIGHTON-TYPE SOLAR DYNAMOS

International Nuclear Information System (INIS)

Hazra, Soumitra; Nandy, Dibyendu

2016-01-01

At present, the Babcock–Leighton flux transport solar dynamo models appear to be the most promising models for explaining diverse observational aspects of the sunspot cycle. The success of these flux transport dynamo models is largely dependent upon a single-cell meridional circulation with a deep equatorward component at the base of the Sun’s convection zone. However, recent observations suggest that the meridional flow may in fact be very shallow (confined to the top 10% of the Sun) and more complex than previously thought. Taken together, these observations raise serious concerns on the validity of the flux transport paradigm. By accounting for the turbulent pumping of magnetic flux, as evidenced in magnetohydrodynamic simulations of solar convection, we demonstrate that flux transport dynamo models can generate solar-like magnetic cycles even if the meridional flow is shallow. Solar-like periodic reversals are recovered even when meridional circulation is altogether absent. However, in this case, the solar surface magnetic field dynamics does not extend all the way to the polar regions. Very importantly, our results demonstrate that the Parker–Yoshimura sign rule for dynamo wave propagation can be circumvented in Babcock–Leighton dynamo models by the latitudinal component of turbulent pumping, which can generate equatorward propagating sunspot belts in the absence of a deep, equatorward meridional flow. We also show that variations in turbulent pumping coefficients can modulate the solar cycle amplitude and periodicity. Our results suggest the viability of an alternate magnetic flux transport paradigm—mediated via turbulent pumping—for sustaining solar-stellar dynamo action.

A COUPLED 2 × 2D BABCOCK–LEIGHTON SOLAR DYNAMO MODEL. II. REFERENCE DYNAMO SOLUTIONS

International Nuclear Information System (INIS)

Lemerle, Alexandre; Charbonneau, Paul

2017-01-01

In this paper we complete the presentation of a new hybrid 2 × 2D flux transport dynamo (FTD) model of the solar cycle based on the Babcock–Leighton mechanism of poloidal magnetic field regeneration via the surface decay of bipolar magnetic regions (BMRs). This hybrid model is constructed by allowing the surface flux transport (SFT) simulation described in Lemerle et al. to provide the poloidal source term to an axisymmetric FTD simulation defined in a meridional plane, which in turn generates the BMRs required by the SFT. A key aspect of this coupling is the definition of an emergence function describing the probability of BMR emergence as a function of the spatial distribution of the internal axisymmetric magnetic field. We use a genetic algorithm to calibrate this function, together with other model parameters, against observed cycle 21 emergence data. We present a reference dynamo solution reproducing many solar cycle characteristics, including good hemispheric coupling, phase relationship between the surface dipole and the BMR-generating internal field, and correlation between dipole strength at cycle maximum and peak amplitude of the next cycle. The saturation of the cycle amplitude takes place through the quenching of the BMR tilt as a function of the internal field. The observed statistical scatter about the mean BMR tilt, built into the model, acts as a source of stochasticity which dominates amplitude fluctuations. The model thus can produce Dalton-like epochs of strongly suppressed cycle amplitude lasting a few cycles and can even shut off entirely following an unfavorable sequence of emergence events.

A COUPLED 2 × 2D BABCOCK–LEIGHTON SOLAR DYNAMO MODEL. II. REFERENCE DYNAMO SOLUTIONS

Energy Technology Data Exchange (ETDEWEB)

Lemerle, Alexandre; Charbonneau, Paul, E-mail: lemerle@astro.umontreal.ca, E-mail: paulchar@astro.umontreal.ca [Département de physique, Université de Montréal, 2900 Boulevard Édouard-Montpetit, Montréal, QC, H3T 1J4 (Canada)

2017-01-10

In this paper we complete the presentation of a new hybrid 2 × 2D flux transport dynamo (FTD) model of the solar cycle based on the Babcock–Leighton mechanism of poloidal magnetic field regeneration via the surface decay of bipolar magnetic regions (BMRs). This hybrid model is constructed by allowing the surface flux transport (SFT) simulation described in Lemerle et al. to provide the poloidal source term to an axisymmetric FTD simulation defined in a meridional plane, which in turn generates the BMRs required by the SFT. A key aspect of this coupling is the definition of an emergence function describing the probability of BMR emergence as a function of the spatial distribution of the internal axisymmetric magnetic field. We use a genetic algorithm to calibrate this function, together with other model parameters, against observed cycle 21 emergence data. We present a reference dynamo solution reproducing many solar cycle characteristics, including good hemispheric coupling, phase relationship between the surface dipole and the BMR-generating internal field, and correlation between dipole strength at cycle maximum and peak amplitude of the next cycle. The saturation of the cycle amplitude takes place through the quenching of the BMR tilt as a function of the internal field. The observed statistical scatter about the mean BMR tilt, built into the model, acts as a source of stochasticity which dominates amplitude fluctuations. The model thus can produce Dalton-like epochs of strongly suppressed cycle amplitude lasting a few cycles and can even shut off entirely following an unfavorable sequence of emergence events.

Low-latitude plasma drifts from a simulation of the global atmospheric dynamo

International Nuclear Information System (INIS)

Crain, D.J.; Heelis, R.A.; Bailey, G.J.; Richmond, A.D.

1993-01-01

The authors work with a dynamo model to address questions about plasma drifts in the E region, primarily at low latitudes. Tidal winds have been known to have a big influence on electric fields in the E region, and magnetic fields and ion drifts in the equatorial F region. Recent work has centered on self consistency in simulations, using realistic wind distributions, 3-D current distributions, and more accurate measures of the currents and conductivities. The wind dynamo in the ionosphere is well accepted as the main source of electric fields in the low and mid latitudes. The authors present a self consistent model of the plasma distribution and the dynamo driven electric potential distribution. Their results are compared with other simulations. A major concern in their model was reproducing ion drift observations in the equatorial region. Their conclusion is that the F region plays a significant role in the low latitude dyanamo effects, much larger than was previously assumed. When they build into their model realistic ionospheric conditions, allow for appropriate wind distributions, and allow a self consistent redistribution of plasma in the night, they find the model simulates measured ion drifts more closely. Their model is normalized against observations at Jicamarca. By allowing E x B drifts in the ionosphere, and F region zonal winds they can reproduce many of the night changes in the ion drifts at Jicamarca

Stochastic disk dynamo as a model of reversals of the Earth's magnetic field

International Nuclear Information System (INIS)

Ito, H.M.

1988-01-01

A stochastic model is given of a system composed of N similar disk dynamos interacting with one another. The time evolution of the system is governed by a master equation of the class introduced by van Kampen as relevant to stochastic macrosystems. In the model, reversals of the Earth's magnetic field are regarded as large deviations caused by a small random force of O(N/sup -1/2/) from one of the field polarities to the other. Reversal processes are studied by simulation, which shows that the model explains well the activities of the paleomagnetic field inclusive of statistical laws of the reversal sequence and the intensity distribution. Comparison are made between the model and dynamical disk dynamo models

Effects due to induced azimuthal eddy currents in a self-exciting Faraday disk homopolar dynamo with a nonlinear series motor. I.. Two special cases

Science.gov (United States)

Hide, Raymond; Moroz, Irene M.

1999-10-01

The elucidation of the behaviour of physically realistic self-exciting Faraday-disk dynamos bears inter alia on attempts by theoretical geophysicists to interpret observations of geomagnetic polarity reversals. Hide [The nonlinear differential equations governing a hierarchy of self-exciting coupled Faraday-disk homopolar dynamos, Phys. Earth Planet. Interiors 103 (1997) 281-291; Nonlinear quenching of current fluctuations in a self-exciting homopolar dynamo, Nonlinear Processes in Geophysics 4 (1998) 201-205] has introduced a novel 4-mode set of nonlinear ordinary differential equations to describe such a dynamo in which a nonlinear electric motor is connected in series with the coil. The applied couple, α, driving the disk is steady and the Lorentz couple driving the motor is a quadratic function, x(1-ɛ)+ɛσx 2, of the dynamo-generated current x, with 0≤ɛ≤1. When there are no additional biasing effects due to background magnetic fields etc., the behaviour of the dynamo is determined by eight independent non-negative control parameters. These include ρ, proportional to the resistance of the disk to azimuthal eddy currents, and β, an inverse measure of the moment of inertia of the armature of the motor. When β=0 (the case when the motor is absent and ɛ and σ are redundant) and ρ -1≠0 , the 4-mode dynamo equations reduce to the 3-mode Lorenz equations, which can behave chaotically [E. Knobloch, Chaos in the segmented disc dynamo, Phys. Lett. A 82 (1981) 439-440]. When β≠0 but ρ -1=0 , the 4-mode set of equations reduces to a 3-mode dynamo [R. Hide (1997), see above], which can also behave chaotically when ɛ=0 [R. Hide, A.C. Skeldon, D.J. Acheson, A study of two novel self-exciting single-disk homopolar dynamos: theory, Proc. R. Soc. Lond. A 452 (1996) 1369-1395] but not when ɛ=1 [R. Hide (1998), see above]. In the latter case, however, all persistent fluctuations are completely quenched [R. Hide (1998), see above]. In this paper we investigate

Nonlinear quenching of current fluctuations in a self-exciting homopolar dynamo

Directory of Open Access Journals (Sweden)

R. Hide

1997-01-01

Full Text Available In the interpretation of geomagnetic polarity reversals with their highly variable frequency over geological time it is necessary, as with other irregularly fluctuating geophysical phenomena, to consider the relative importance of forced contributions associated with changing boundary conditions and of free contributions characteristic of the behaviour of nonlinear systems operating under fixed boundary conditions.  New evidence -albeit indirect- in favour of the likely predominance of forced contributions is provided by the discovery reported here of the possibility of complete quenching by nonlineax effects of current fluctuations in a self-exciting homopolar dynamo with its single Faraday disk driven into rotation with angular speed y(τ (where τ denotes time by a steady applied couple.  The armature of an electric motor connected in series with the coil of the dynamo is driven into rotation' with angular speed z(τ by a torque xf (x due to Lorentz forces associated with the electric current x(τ in the system (just as certain parts of the spectrum of eddies within the liquid outer core are generated largely by Lorentz forces associated with currents generated by the self-exciting magnetohydrodynamic (MHD geodynamo.   The discovery is based on bifurcation analysis supported by computational studies of the following (mathematically novel autonomous set of nonlinear ordinary differential equations: dx/dt = x(y - 1 - βzf(x, dy/dt = α(1 - x² - κy, dz/dt = xf (x -λz,          where f (x = 1 - ε + εσx, in cases when the dimensionless parameters (α, β, κ, λ, σ are all positive and 0 ≤ ε ≤ 1. Within those regions of (α, β, κ, λ, σ parameter space where the applied couple, as measured by α, is strong enough for persistent dynamo action (i.e. x ≠ 0 to occur at all, there are in general extensive regions where x(τ exhibits large amplitude regular or irregular (chaotic fluctuations.  But these fluctuating r

Recovery from Maunder-like Grand Minima in a Babcock–Leighton Solar Dynamo Model

Science.gov (United States)

Karak, Bidya Binay; Miesch, Mark

2018-06-01

The Sun occasionally goes through Maunder-like extended grand minima when its magnetic activity drops considerably from the normal activity level for several decades. Many possible theories have been proposed to explain the origin of these minima. However, how the Sun managed to recover from such inactive phases every time is even more enigmatic. The Babcock–Leighton type dynamos, which are successful in explaining many features of the solar cycle remarkably well, are not expected to operate during grand minima due to the lack of a sufficient number of sunspots. In this Letter, we explore the question of how the Sun could recover from grand minima through the Babcock–Leighton dynamo. In our three-dimensional dynamo model, grand minima are produced spontaneously as a result of random variations in the tilt angle of emerging active regions. We find that the Babcock–Leighton process can still operate during grand minima with only a minimal number of sunspots, and that the model can emerge from such phases without the need for an additional generation mechanism for the poloidal field. The essential ingredient in our model is a downward magnetic pumping, which inhibits the diffusion of the magnetic flux across the solar surface.

MAGNETIC CYCLES IN A DYNAMO SIMULATION OF FULLY CONVECTIVE M-STAR PROXIMA CENTAURI

Energy Technology Data Exchange (ETDEWEB)

Yadav, Rakesh K.; Wolk, Scott J. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Christensen, Ulrich R. [Max-Planck-Institut für Sonnensystemforschung, Justus-von-Liebig-Weg 3, D-37077 Göttingen (Germany); Poppenhaeger, Katja, E-mail: rakesh.yadav@cfa.harvard.edu [Astrophysics Research Center, Queen’s University Belfast, Belfast BT7 1NN (United Kingdom)

2016-12-20

The recent discovery of an Earth-like exoplanet around Proxima Centauri has shined a spot light on slowly rotating fully convective M-stars. When such stars rotate rapidly (period ≲20 days), they are known to generate very high levels of activity that is powered by a magnetic field much stronger than the solar magnetic field. Recent theoretical efforts are beginning to understand the dynamo process that generates such strong magnetic fields. However, the observational and theoretical landscape remains relatively uncharted for fully convective M-stars that rotate slowly. Here, we present an anelastic dynamo simulation designed to mimic some of the physical characteristics of Proxima Centauri, a representative case for slowly rotating fully convective M-stars. The rotating convection spontaneously generates differential rotation in the convection zone that drives coherent magnetic cycles where the axisymmetric magnetic field repeatedly changes polarity at all latitudes as time progress. The typical length of the “activity” cycle in the simulation is about nine years, in good agreement with the recently proposed activity cycle length of about seven years for Proxima Centauri. Comparing our results with earlier work, we hypothesis that the dynamo mechanism undergoes a fundamental change in nature as fully convective stars spin down with age.

A DOUBLE-RING ALGORITHM FOR MODELING SOLAR ACTIVE REGIONS: UNIFYING KINEMATIC DYNAMO MODELS AND SURFACE FLUX-TRANSPORT SIMULATIONS

International Nuclear Information System (INIS)

Munoz-Jaramillo, Andres; Martens, Petrus C. H.; Nandy, Dibyendu; Yeates, Anthony R.

2010-01-01

The emergence of tilted bipolar active regions (ARs) and the dispersal of their flux, mediated via processes such as diffusion, differential rotation, and meridional circulation, is believed to be responsible for the reversal of the Sun's polar field. This process (commonly known as the Babcock-Leighton mechanism) is usually modeled as a near-surface, spatially distributed α-effect in kinematic mean-field dynamo models. However, this formulation leads to a relationship between polar field strength and meridional flow speed which is opposite to that suggested by physical insight and predicted by surface flux-transport simulations. With this in mind, we present an improved double-ring algorithm for modeling the Babcock-Leighton mechanism based on AR eruption, within the framework of an axisymmetric dynamo model. Using surface flux-transport simulations, we first show that an axisymmetric formulation-which is usually invoked in kinematic dynamo models-can reasonably approximate the surface flux dynamics. Finally, we demonstrate that our treatment of the Babcock-Leighton mechanism through double-ring eruption leads to an inverse relationship between polar field strength and meridional flow speed as expected, reconciling the discrepancy between surface flux-transport simulations and kinematic dynamo models.

Dynamos of the Sun, Stars, and Planets - Preface

Science.gov (United States)

Stix, M.

2005-04-01

The conference ``Dynamos of the Sun, Stars, and Planets'' was organized by the Kiepenheuer-Institut für Sonnenphysik Freiburg, and was held at the University of Freiburg from 4th to 6th October 2004. About 50 participants attended the conference, with 8 review lectures, 20 contributed talks, and 6 posters. With only few exceptions, these contributions appear in the present issue of Astronomische Nachrichten. This preface summarizes the discussion of the closing session.

Solar activity simulation and forecast with a flux-transport dynamo

Science.gov (United States)

Macario-Rojas, Alejandro; Smith, Katharine L.; Roberts, Peter C. E.

2018-06-01

We present the assessment of a diffusion-dominated mean field axisymmetric dynamo model in reproducing historical solar activity and forecast for solar cycle 25. Previous studies point to the Sun's polar magnetic field as an important proxy for solar activity prediction. Extended research using this proxy has been impeded by reduced observational data record only available from 1976. However, there is a recognised need for a solar dynamo model with ample verification over various activity scenarios to improve theoretical standards. The present study aims to explore the use of helioseismology data and reconstructed solar polar magnetic field, to foster the development of robust solar activity forecasts. The research is based on observationally inferred differential rotation morphology, as well as observed and reconstructed polar field using artificial neural network methods via the hemispheric sunspot areas record. Results show consistent reproduction of historical solar activity trends with enhanced results by introducing a precursor rise time coefficient. A weak solar cycle 25, with slow rise time and maximum activity -14.4% (±19.5%) with respect to the current cycle 24 is predicted.

SpF: Enabling Petascale Performance for Pseudospectral Dynamo Models

Science.gov (United States)

Jiang, W.; Clune, T.; Vriesema, J.; Gutmann, G.

2013-12-01

Pseudospectral (PS) methods possess a number of characteristics (e.g., efficiency, accuracy, natural boundary conditions) that are extremely desirable for dynamo models. Unfortunately, dynamo models based upon PS methods face a number of daunting challenges, which include exposing additional parallelism, leveraging hardware accelerators, exploiting hybrid parallelism, and improving the scalability of global memory transposes. Although these issues are a concern for most models, solutions for PS methods tend to require far more pervasive changes to underlying data and control structures. Further, improvements in performance in one model are difficult to transfer to other models, resulting in significant duplication of effort across the research community. We have developed an extensible software framework for pseudospectral methods called SpF that is intended to enable extreme scalability and optimal performance. High-level abstractions provided by SpF unburden applications of the responsibility of managing domain decomposition and load balance while reducing the changes in code required to adapt to new computing architectures. The key design concept in SpF is that each phase of the numerical calculation is partitioned into disjoint numerical 'kernels' that can be performed entirely in-processor. The granularity of domain-decomposition provided by SpF is only constrained by the data-locality requirements of these kernels. SpF builds on top of optimized vendor libraries for common numerical operations such as transforms, matrix solvers, etc., but can also be configured to use open source alternatives for portability. SpF includes several alternative schemes for global data redistribution and is expected to serve as an ideal testbed for further research into optimal approaches for different network architectures. In this presentation, we will describe the basic architecture of SpF as well as preliminary performance data and experience with adapting legacy dynamo codes

Non-kinematic Flux-transport Dynamos Including the Effects of Diffusivity Quenching

Energy Technology Data Exchange (ETDEWEB)

Ichimura, Chiaki; Yokoyama, Takaaki [Department of Earth and Planetary Science, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan)

2017-04-10

Turbulent magnetic diffusivity is quenched when strong magnetic fields suppress turbulent motion in a phenomenon known as diffusivity quenching. Diffusivity quenching can provide a mechanism for amplifying magnetic field and influencing global velocity fields through Lorentz force feedback. To investigate this effect, we conducted mean field flux-transport dynamo simulations that included the effects of diffusivity quenching in a non-kinematic regime. We found that toroidal magnetic field strength is amplified by up to approximately 1.5 times in the convection zone as a result of diffusivity quenching. This amplification is much weaker than that in kinematic cases as a result of Lorentz force feedback on the system’s differential rotation. While amplified toroidal fields lead to the suppression of equatorward meridional flow locally near the base of the convection zone, large-scale equatorward transport of magnetic flux via meridional flow, which is the essential process of the flux-transport dynamo, is sustainable in our calculations.

Dynamo action and magnetic buoyancy in convection simulations with vertical shear

Science.gov (United States)

Guerrero, G.; Käpylä, P.

2011-10-01

A hypothesis for sunspot formation is the buoyant emergence of magnetic flux tubes created by the strong radial shear at the tachocline. In this scenario, the magnetic field has to exceed a threshold value before it becomes buoyant and emerges through the whole convection zone. In this work we present the results of direct numerical simulations of compressible turbulent convection that include a vertical shear layer. Like the solar tachocline, the shear is located at the interface between convective and stable layers. We follow the evolution of a random seed magnetic field with the aim of study under what conditions it is possible to excite the dynamo instability and whether the dynamo generated magnetic field becomes buoyantly unstable and emerges to the surface as expected in the flux-tube context. We find that shear and convection are able to amplify the initial magnetic field and form large-scale elongated magnetic structures. The magnetic field strength depends on several parameters such as the shear amplitude, the thickness and location of the shear layer, and the magnetic Reynolds number (Rm). Models with deeper and thicker shear layers allow longer storage and are more favorable for generating a mean magnetic field. Models with higher Rm grow faster but saturate at slightly lower levels. Whenever the toroidal magnetic field reaches amplitudes greater a threshold value which is close to the equipartition value, it becomes buoyant and rises into the convection zone where it expands and forms mushroom shape structures. Some events of emergence, i.e., those with the largest amplitudes of the amplified field, are able to reach the very uppermost layers of the domain. These episodes are able to modify the convective pattern forming either broader convection cells or convective eddies elongated in the direction of the field. However, in none of these events the field preserves its initial structure. The back-reaction of the magnetic field on the fluid is also

Linear astrophysical dynamos in rotating spheres: Differential rotation, anisotropic turbulent magnetic diffusivity, and solar-stellar cycle magnetic parity

International Nuclear Information System (INIS)

Yoshimura, H.; Wang, Z.; Wu, F.

1984-01-01

Differential rotation dependence of the selection mechanism for magnetic parity of solar and stellar cycles is studied by assuming various differential rotation profiles inn the dynamo equation. The parity selection depends on propagation direction of oscillating magnetic fields in the form of dynamo waves which propagate along isorotation surfaces. When there is any radial gradient in the differential rotation, dynamo waves propagate either equatorward or poleward. In the former case, field systems of the two hemispheres approach each other and collide at the equator. Then, odd parity is selected. In the latter case, field systems of the two hemispheres recede from each other and do not collide at the equator, an even parity is selected. Thus the equatorial migration of wings of the butterfly iagram of the solar cycle and its odd parity are intrinsically related. In the case of purely latitudibnal differential rotation, dynamo waves propagate purely radially and growth rates of odd and even modes are nearly the same even when dynamo strength is weak when the parity selection mechanism should work most efficiently. In this case, anisotropy of turbulent diffusivity is a decisive factor to separate odd and even modes. Unlike in the case of radial-gradient-dominated differential rotation in which any difference between diffusivities for poloidal and toroidal fields enhancess the parity selection without changing the parity, the parity selection in the case of latitudinal-gradient-dominated differential rotation depends on the difference of diffusivities for poloidal and toroidal fields. When diffusivity for poloidal fields iss larger than that for toroidal fields, odd parity is selected; and when diffusivity for toroidal fields is larger, even parity is selected

Bounds on the growth of the magnetic energy for the Hall kinematic dynamo equation

Energy Technology Data Exchange (ETDEWEB)

Nunez, Manuel [Departamento de Analisis Matematico Universidad de Valladolid 47005 Valladolid (Spain)

2005-09-09

While the magnetic induction equation in plasmas, governing kinematic dynamos, is a linear one admitting exponential growth of the magnetic energy for certain velocity fields, the addition of the Hall term turns it into a nonlinear parabolic equation. Local existence of solutions may be proved, but in contrast with the magnetohydrodynamics case, for a number of boundary conditions the magnetic energy grows at most linearly in time for stationary velocity fields, and like the square of the time in the general case. It appears that the Hall effect enhances diffusivity in some way to compensate for the positive contribution of the transport of the magnetic field by the flow occurring in fast dynamos.

Generation of a Magnetic Field by Dynamo Action in a Turbulent Flow of Liquid Sodium

International Nuclear Information System (INIS)

Monchaux, R.; Chiffaudel, A.; Daviaud, F.; Dubrulle, B.; Gasquet, C.; Marie, L.; Ravelet, F.; Berhanu, M.; Fauve, S.; Mordant, N.; Petrelis, F.; Bourgoin, M.; Moulin, M.; Odier, Ph.; Pinton, J.-F.; Volk, R.

2007-01-01

We report the observation of dynamo action in the von Karman sodium experiment, i.e., the generation of a magnetic field by a strongly turbulent swirling flow of liquid sodium. Both mean and fluctuating parts of the field are studied. The dynamo threshold corresponds to a magnetic Reynolds number R m ∼30. A mean magnetic field of the order of 40 G is observed 30% above threshold at the flow lateral boundary. The rms fluctuations are larger than the corresponding mean value for two of the components. The scaling of the mean square magnetic field is compared to a prediction previously made for high Reynolds number flows

Dynamo Tests for Stratification Below the Core-Mantle Boundary

Science.gov (United States)

Olson, P.; Landeau, M.

2017-12-01

Evidence from seismology, mineral physics, and core dynamics points to a layer with an overall stable stratification in the Earth's outer core, possibly thermal in origin, extending below the core-mantle boundary (CMB) for several hundred kilometers. In contrast, energetic deep mantle convection with elevated heat flux implies locally unstable thermal stratification below the CMB in places, consistent with interpretations of non-dipole geomagnetic field behavior that favor upwelling flows below the CMB. Here, we model the structure of convection and magnetic fields in the core using numerical dynamos with laterally heterogeneous boundary heat flux in order to rationalize this conflicting evidence. Strongly heterogeneous boundary heat flux generates localized convection beneath the CMB that coexists with an overall stable stratification there. Partially stratified dynamos have distinctive time average magnetic field structures. Without stratification or with stratification confined to a thin layer, the octupole component is small and the CMB magnetic field structure includes polar intensity minima. With more extensive stratification, the octupole component is large and the magnetic field structure includes intense patches or high intensity lobes in the polar regions. Comparisons with the time-averaged geomagnetic field are generally favorable for partial stratification in a thin layer but unfavorable for stratification in a thick layer beneath the CMB.

Accretion disc dynamo activity in local simulations spanning weak-to-strong net vertical magnetic flux regimes

Science.gov (United States)

Salvesen, Greg; Simon, Jacob B.; Armitage, Philip J.; Begelman, Mitchell C.

2016-03-01

Strongly magnetized accretion discs around black holes have attractive features that may explain enigmatic aspects of X-ray binary behaviour. The structure and evolution of these discs are governed by a dynamo-like mechanism, which channels part of the accretion power liberated by the magnetorotational instability (MRI) into an ordered toroidal magnetic field. To study dynamo activity, we performed three-dimensional, stratified, isothermal, ideal magnetohydrodynamic shearing box simulations. The strength of the self-sustained toroidal magnetic field depends on the net vertical magnetic flux, which we vary across almost the entire range over which the MRI is linearly unstable. We quantify disc structure and dynamo properties as a function of the initial ratio of mid-plane gas pressure to vertical magnetic field pressure, β _0^mid = p_gas / p_B. For 10^5 ≥ β _0^mid ≥ 10 the effective α-viscosity parameter scales as a power law. Dynamo activity persists up to and including β _0^mid = 10^2, at which point the entire vertical column of the disc is magnetic pressure dominated. Still stronger fields result in a highly inhomogeneous disc structure, with large density fluctuations. We show that the turbulent steady state βmid in our simulations is well matched by the analytic model of Begelman et al. describing the creation and buoyant escape of toroidal field, while the vertical structure of the disc can be broadly reproduced using this model. Finally, we discuss the implications of our results for observed properties of X-ray binaries.

New solar telescope in Big Bear: evidence for super-diffusivity and small-scale solar dynamos?

International Nuclear Information System (INIS)

Goode, Philip R; Abramenko, Valentyna; Yurchyshyn, Vasyl

2012-01-01

The 1.6 m clear aperture New Solar Telescope (NST) in Big Bear Solar Observatory (BBSO) is now providing the highest resolution solar data ever. These data have revealed surprises about the Sun on small-scales including the observation that bright points (BPs), which can be used as proxies for the intense, compact magnetic elements that are apparent in photospheric intergranular lanes. The BPs are ever more numerous on ever smaller spatial scales as though there were no limit to how small the BPs can be. Here we discuss high resolution NST data on BPs that provide support for the ideas that a turbulent regime of super-diffusivity dominates in the quiet Sun, and there are local dynamos operating near the solar surface. (comment)

Spectroscopic measurement of the MHD dynamo in the MST reversed field pinch

International Nuclear Information System (INIS)

Chapman, J.T.

1998-09-01

The author has directly observed the coupling of ion velocity fluctuations and magnetic field fluctuations to produce an MHD dynamo electric field in the interior of the MST reversed field pinch. Chord averaged ion velocity fluctuations were measured with a fast spectroscopic diagnostic which collects line radiation from intrinsic carbon impurities simultaneously along two lines of sight. The chords employed for the measurements resolved long wavelength velocity fluctuations of several km/s at 8--20 kHz as tiny, fast Doppler shifts in the emitted line profile. During discrete dynamo events the velocity fluctuations, like the magnetic fluctuations, increase dramatically. The toroidal and poloidal chords with impact parameters of 0.3 a and 0.6 a respectively, resolved fluctuation wavenumbers with resonance surfaces near or along the lines of sight indicating a radial velocity fluctuation width for each mode which spans only a fraction of the plasma radius. The phase between the measured toroidal velocity fluctuations and the magnetic fluctuations matches the predictions of resistive MHD while the poloidal velocity fluctuations exhibit a phase consistent with the superposition of MHD effects and the advection of a mean flow gradient past the poloidal line of sight. Radial velocity fluctuations resolved by a chord through the center of the plasma were small compared to the poloidal and toroidal fluctuations and exhibited low coherence with the magnetic fluctuations. The ensembled nonlinear product of the ion velocity fluctuations and fluctuations in the magnetic field indicates a substantial dynamo electric field which peaks during the periods of spontaneous flux generation

Spectroscopic measurement of the MHD dynamo in the MST reversed field pinch

Energy Technology Data Exchange (ETDEWEB)

Chapman, James Tharp [Univ. of Wisconsin, Madison, WI (United States)

1998-09-01

The author has directly observed the coupling of ion velocity fluctuations and magnetic field fluctuations to produce an MHD dynamo electric field in the interior of the MST reversed field pinch. Chord averaged ion velocity fluctuations were measured with a fast spectroscopic diagnostic which collects line radiation from intrinsic carbon impurities simultaneously along two lines of sight. The chords employed for the measurements resolved long wavelength velocity fluctuations of several km/s at 8-20 kHz as tiny, fast Doppler shifts in the emitted line profile. During discrete dynamo events the velocity fluctuations, like the magnetic fluctuations, increase dramatically. The toroidal and poloidal chords with impact parameters of 0.3 a and 0.6 a respectively, resolved fluctuation wavenumbers with resonance surfaces near or along the lines of sight indicating a radial velocity fluctuation width for each mode which spans only a fraction of the plasma radius. The phase between the measured toroidal velocity fluctuations and the magnetic fluctuations matches the predictions of resistive MHD while the poloidal velocity fluctuations exhibit a phase consistent with the superposition of MHD effects and the advection of a mean flow gradient past the poloidal line of sight. Radial velocity fluctuations resolved by a chord through the center of the plasma were small compared to the poloidal and toroidal fluctuations and exhibited low coherence with the magnetic fluctuations. The ensembled nonlinear product of the ion velocity fluctuations and fluctuations in the magnetic field indicates a substantial dynamo electric field which peaks during the periods of spontaneous flux generation.

Lorentz violation bounds from torsion trace fermion sector and galaxy M51 data and chiral dynamos

Energy Technology Data Exchange (ETDEWEB)

Garcia de Andrade, L.C. [IF-UERJ, Departamento de Fisica Teorica, Rio de Janeiro, RJ (Brazil)

2017-06-15

Earlier we have computed a Lorentz violation (LV) bound for torsion terms via galactic dynamos and found bounds similar to the one obtained by Kostelecky et al. (Phys Rev Lett 100:111102, 2008) which is of the order of 10{sup -31} GeV. Their result was found making use of the axial torsion vector in terms of Dirac spinors and minimal torsion coupling in flat space-time of fermions. In this paper, a torsion dynamo equation obtained using the variation of the torsion trace and galaxy M51 data of 500 pc are used to place an upper bound of 10{sup -26} GeV in LV, which agrees with the one by Kostelecky and his group using an astrophysical framework background. Their lowest bound was obtained in earth laboratory using dual masers. One of the purposes of this paper is to apply the Faraday self-induction magnetic equation, recently extended to torsioned space-time, by the author to show that it lends support to physics in Riemann-Cartan space-time, in several distinct physical backgrounds. Backreaction magnetic effects are used to obtain the LV bounds. Previously Bamba et al. (JCAP 10:058, 2012) have used the torsion trace in their teleparallel investigation of the IGMF, with the argument that the torsion trace leads to less weaker effects than the other irreducible components of the torsion tensor. LV is computed in terms of a chiral-torsion-like current in the new dynamo equation analogous to the Dvornikov and Semikoz dynamo equation with chiral magnetic currents. Making use of the chiral-torsion dynamo equation we estimate the LV bounds in the early universe to be of the order of 10{sup -24} GeV, which was the order of the charged-lepton sector. Our main result is that it is possible to obtain more stringent bounds than the ones found in the fermion sector of astrophysics in the new revised 2017 data table for CPT and Lorentz violation by Kostelecky and Mewes. They found in several astrophysical backgrounds, orders of magnitude such as 10{sup -24} and 10{sup -23} Ge

First Numerical Simulations of Turbulent Dynamos Driven by Libration, Precession and Tides in Triaxial Ellipsoids - An Alternative Route for Planetary Magnetism

Science.gov (United States)

Le Bars, M.; Kanuganti, S. R.; Favier, B.

2017-12-01

Most of the time, planetary dynamos are - tacitly or not - associated with thermo-solutal convection. The convective dynamo model has indeed proven successful to explain the current Earth's magnetic field. However, its results are sometimes difficult to reconcile with observational data and its validity can be questioned for several celestial bodies. For instance, the small size of the Moon and Ganymede makes it difficult to maintain a sufficient temperature gradient to sustain convection and to explain their past and present magnetic fields, respectively. The same caveat applies to the growing number of planetesimals shown to have generated magnetic fields in their early history. Finally, the energy budget of the early Earth is difficult to reconcile with a convective dynamo before the onset of inner core growth. Significant effort has thus been put into finding new routes for planetary dynamo. In particular, the rotational dynamics of planets, moons and small bodies, where their average spinning motion is periodically perturbed by the small mechanical forcings of libration, precession and/or tides, is now widely accepted as an efficient source of core turbulence. The underlying mechanism relies on a parametric instability where the inertial waves of the rotating fluid core are resonantly excited by the small forcing, leading to exponential growth and bulk filling intense motions, pumping their energy from the orbital dynamics. Dynamos driven by mechanical forcing have been suggested for the Moon, Mars, Io, the early Earth, etc. However, the real dynamo capacity of the corresponding flows has up-to-now been studied only in very limited cases, with simplified spherical/spheroidal geometries and/or overly viscous fluids. We will present here the first numerical simulations of dynamos driven by libration, precession and tides, in the triaxial ellipsoidal geometry and in the turbulent regime relevant for planetary cores. We will describe the numerical techniques

A model of the solar cycle driven by the dynamo action of the global convection in the solar convection zone

International Nuclear Information System (INIS)

Yoshimura, H.

1975-01-01

The dynamo equation which represents the longitudinally averaged magnetohydrodynamical action of the global convection influenced by the rotation in the solar convection zone is solved numerically to simulate the solar cycle as an initial boundary-value problem. The radial and latitudinal structure of the dynamo action is parametrized in accordance with the structure of the rotation, and of the global convection especially in such a way as to represent the presence of the two cells of the regeneration action in the radial direction in which the action has opposite signs, which is typical of the regeneration action of the global convection. A nonlinear process is included by assuming that part of the magnetic field energy is dissipated when the magnetic field strength exceeds some critical value; the formation of active regions and subsequent dissipations are thus simulated. By adjusting the parameters within a reasonable range, oscillatory solutions are obtained to simulate the solar cycle with the period of the right order of magnitude and with the patterns of evolution of the latitudinal distribution of the toroidal component of the magnetic field similar to the observed Butterfly Diagram of sunspots. The evolution of the latitudinal distribution of the radial component of the magnetic field shows patterns similar to the Butterfly Diagram, but having two branches of different polarity in each hemisphere. The development of the radial structure of the magnetic field associated with the solar cycle is presented. The importance of the poleward migrating branch of the Butterfly Diagram is emphasized in relation to the relative importance of the role of the latitudinal and radial shears of the differential rotation

Core flow inversion tested with numerical dynamo models

Science.gov (United States)

Rau, Steffen; Christensen, Ulrich; Jackson, Andrew; Wicht, Johannes

2000-05-01

We test inversion methods of geomagnetic secular variation data for the pattern of fluid flow near the surface of the core with synthetic data. These are taken from self-consistent 3-D models of convection-driven magnetohydrodynamic dynamos in rotating spherical shells, which generate dipole-dominated magnetic fields with an Earth-like morphology. We find that the frozen-flux approximation, which is fundamental to all inversion schemes, is satisfied to a fair degree in the models. In order to alleviate the non-uniqueness of the inversion, usually a priori conditions are imposed on the flow; for example, it is required to be purely toroidal or geostrophic. Either condition is nearly satisfied by our model flows near the outer surface. However, most of the surface velocity field lies in the nullspace of the inversion problem. Nonetheless, the a priori constraints reduce the nullspace, and by inverting the magnetic data with either one of them we recover a significant part of the flow. With the geostrophic condition the correlation coefficient between the inverted and the true velocity field can reach values of up to 0.65, depending on the choice of the damping parameter. The correlation is significant at the 95 per cent level for most spherical harmonic degrees up to l=26. However, it degrades substantially, even at long wavelengths, when we truncate the magnetic data sets to l currents, similar to those seen in core-flow models derived from geomagnetic data, occur in the equatorial region. However, the true flow does not contain this flow component. The results suggest that some meaningful information on the core-flow pattern can be retrieved from secular variation data, but also that the limited resolution of the magnetic core field could produce serious artefacts.

Ab Initio Simulations of a Supernova-driven Galactic Dynamo in an Isolated Disk Galaxy

Energy Technology Data Exchange (ETDEWEB)

Butsky, Iryna [Astronomy Department, University of Washington, Seattle, WA 98195 (United States); Zrake, Jonathan; Kim, Ji-hoon; Yang, Hung-I; Abel, Tom [Kavli Institute for Particle Astrophysics and Cosmology, Stanford University, Menlo Park, CA 94025 (United States)

2017-07-10

We study the magnetic field evolution of an isolated spiral galaxy, using isolated Milky Way–mass galaxy formation simulations and a novel prescription for magnetohydrodynamic (MHD) supernova feedback. Our main result is that a galactic dynamo can be seeded and driven by supernova explosions, resulting in magnetic fields whose strength and morphology are consistent with observations. In our model, supernovae supply thermal energy and a low-level magnetic field along with their ejecta. The thermal expansion drives turbulence, which serves a dual role by efficiently mixing the magnetic field into the interstellar medium and amplifying it by means of a turbulent dynamo. The computational prescription for MHD supernova feedback has been implemented within the publicly available ENZO code and is fully described in this paper. This improves upon ENZO 's existing modules for hydrodynamic feedback from stars and active galaxies. We find that the field attains microgauss levels over gigayear timescales throughout the disk. The field also develops a large-scale structure, which appears to be correlated with the disk’s spiral arm density structure. We find that seeding of the galactic dynamo by supernova ejecta predicts a persistent correlation between gas metallicity and magnetic field strength. We also generate all-sky maps of the Faraday rotation measure from the simulation-predicted magnetic field, and we present a direct comparison with observations.

The magnetic universe geophysical and astrophysical dynamo theory

CERN Document Server

Rüdiger, Günther

2004-01-01

Magnetism is one of the most pervasive features of the Universe, with planets, stars and entire galaxies all having associated magnetic fields. All of these fields are generated by the motion of electrically conducting fluids, the so-called dynamo effect. The precise details of what drives the motion, and indeed what the fluid consists of, differ widely though. In this work the authors draw upon their expertise in geophysical and astrophysical MHD to explore some of these phenomena, and describe the similarities and differences between different magnetized objects. They also explain why magn

Mean-field dynamos: The old concept and some recent developments. Karl Schwarzschild Award Lecture 2013

Science.gov (United States)

Rädler, K.-H.

This article elucidates the basic ideas of electrodynamics and magnetohydrodynamics of mean fields in turbulently moving conducting fluids. It is stressed that the connection of the mean electromotive force with the mean magnetic field and its first spatial derivatives is in general neither local nor instantaneous and that quite a few claims concerning pretended failures of the mean-field concept result from ignoring this aspect. In addition to the mean-field dynamo mechanisms of α2 and α Ω type several others are considered. Much progress in mean-field electrodynamics and magnetohydrodynamics results from the test-field method for calculating the coefficients that determine the connection of the mean electromotive force with the mean magnetic field. As an important example the memory effect in homogeneous isotropic turbulence is explained. In magnetohydrodynamic turbulence there is the possibility of a mean electromotive force that is primarily independent of the mean magnetic field and labeled as Yoshizawa effect. Despite of many efforts there is so far no convincing comprehensive theory of α quenching, that is, the reduction of the α effect with growing mean magnetic field, and of the saturation of mean-field dynamos. Steps toward such a theory are explained. Finally, some remarks on laboratory experiments with dynamos are made.

Paleomagnetic evidence for dynamo activity driven by inward crystallisation of a metallic asteroid

Science.gov (United States)

Bryson, James F. J.; Weiss, Benjamin P.; Harrison, Richard J.; Herrero-Albillos, Julia; Kronast, Florian

2017-08-01

The direction in which a planetary core solidifies has fundamental implications for the feasibility and nature of dynamo generation. Although Earth's core is outwardly solidifying, the cores of certain smaller planetary bodies have been proposed to inwardly solidify due to their lower central pressures. However, there have been no unambiguous observations of inwardly solidified cores or the relationship between this solidification regime and planetary magnetic activity. To address this gap, we present the results of complimentary paleomagnetic techniques applied to the matrix metal and silicate inclusions within the IVA iron meteorites. This family of meteorites has been suggested to originate from a planetary core that had its overlaying silicate mantle removed by collisions during the early solar system. This process is thought to have produced a molten ball of metal that cooled rapidly and has been proposed to have inwardly solidified. Recent thermal evolution models of such a body predict that it should have generated an intense, multipolar and time-varying dynamo field. This field could have been recorded as a remanent magnetisation in the outer, cool layers of a solid crust on the IVA parent core. We find that the different components in the IVA iron meteorites display a range of paleomagnetic fidelities, depending crucially on the cooling rate of the meteorite. In particular, silicate inclusions in the quickly cooled São João Nepomuceno meteorite are poor paleomagnetic recorders. On the other hand, the matrix metal and some silicate subsamples from the relatively slowly cooled Steinbach meteorite are far better paleomagnetic recorders and provide evidence of an intense (≳100 μT) and directionally varying (exhibiting significant changes on a timescale ≲200 kyr) magnetic field. This is the first demonstration that some iron meteorites record ancient planetary magnetic fields. Furthermore, the observed field intensity, temporal variability and dynamo

Inertial effects on thermochemically driven convection and hydromagnetic dynamos in a spherical shell

Czech Academy of Sciences Publication Activity Database

Šimkanin, Ján; Kyselica, Juraj; Guba, P.

2018-01-01

Roč. 212, č. 3 (2018), s. 2194-2205 ISSN 0956-540X Institutional support: RVO:67985530 Keywords : composition and structure of the core * dynamo * nonlinear differential equations * numerical modelling Subject RIV: DE - Earth Magnetism, Geodesy, Geography Impact factor: 2.414, year: 2016

Turbulent Diffusion of the Geomagnetic Field and Dynamo Theories

OpenAIRE

Filippi, Enrico

2016-01-01

The thesis deals with the Dynamo Theories of the Earth’s Magnetic Field and mainly deepens the turbulence phenomena in the fluid Earth’s core. Indeed, we think that these phenomena are very important to understand the recent decay of the geomagnetic field. The thesis concerns also the dynamics of the outer core and some very rapid changes of the geomagnetic field observed in the Earth’s surface and some aspects regarding the (likely) isotropic turbulence in the Magnetohydrodynamics. These top...

A homopolar disc dynamo experiment with liquid metal contacts

OpenAIRE

Avalos-Zúñiga, R. A.; Priede, J.; Bello-Morales, C. E.

2017-01-01

We present experimental results of a homopolar disc dynamo constructed at CICATA-Quer\\'etaro in Mexico. The device consists of a flat, multi-arm spiral coil which is placed above a fast-spinning metal disc and connected to the latter by sliding liquid-metal electrical contacts. Theoretically, self-excitation of the magnetic field is expected at the critical magnetic Reynolds number Rm~45, which corresponds to a critical rotation rate of about 10 Hz. We measured the magnetic field above the di...

Master stability functions reveal diffusion-driven pattern formation in networks

Science.gov (United States)

Brechtel, Andreas; Gramlich, Philipp; Ritterskamp, Daniel; Drossel, Barbara; Gross, Thilo

2018-03-01

We study diffusion-driven pattern formation in networks of networks, a class of multilayer systems, where different layers have the same topology, but different internal dynamics. Agents are assumed to disperse within a layer by undergoing random walks, while they can be created or destroyed by reactions between or within a layer. We show that the stability of homogeneous steady states can be analyzed with a master stability function approach that reveals a deep analogy between pattern formation in networks and pattern formation in continuous space. For illustration, we consider a generalized model of ecological meta-food webs. This fairly complex model describes the dispersal of many different species across a region consisting of a network of individual habitats while subject to realistic, nonlinear predator-prey interactions. In this example, the method reveals the intricate dependence of the dynamics on the spatial structure. The ability of the proposed approach to deal with this fairly complex system highlights it as a promising tool for ecology and other applications.

Sudden transitions and grand variations in the solar dynamo, past and future

NARCIS (Netherlands)

de Jager, C.; Duhau, S.

2012-01-01

The solar dynamo is the exotic dance of the sun's two major magnetic field components, the poloidal and the toroidal, interacting in anti-phase. On the basis of new data on the geomagnetic aa index, we improve our previous forecast of the properties of the current Schwabe cycle #24. Its maximum will

The aurora and the magnetosphere - The Chapman Memorial Lecture. [dynamo theory development, 1600-present

Science.gov (United States)

Akasofu, S.-I.

1974-01-01

Review of recent progress in magnetospheric physics, in particular, in understanding the magnetospheric substorm. It is shown that a number of magnetospheric phenomena can now be understood by viewing the solar wind-magnetosphere interaction as an MHD dynamo; auroral phenomena are powered by the dynamo. Also, magnetospheric responses to variations of the north-south and east-west components of the interplanetary magnetic field have been identified. The magnetospheric substorm is entirely different from the responses of the magnetosphere to the southward component of the interplanetary magnetic field. It may be associated with the formation of a neutral line within the plasma sheet and with an enhanced reconnection along the line. A number of substorm-associated phenomena can be understood by noting that the new neutral line formation is caused by a short-circuiting of a part of the magnetotail current.

Energy coupling function and solar wind-magnetosphere dynamo

International Nuclear Information System (INIS)

Kan, J.R.; Lee, L.C.

1979-01-01

The power delivered by the solar wind dynamo to the open magnetosphere is calculated based on the concept of field line reconnection, independent of the MHD steady reconnection theories. By recognizing a previously overlooked geometrical relationship between the reconnection electric field and the magnetic field, the calculated power is shown to be approximately proportional to the Akasofu-Perreault energy coupling function for the magnetospheric substorm. In addition to the polar cap potential, field line reconnection also gives rise to parallel electric fields on open field lines in the high-latitude cusp and the polar cap reions

Finite correlation time effects in kinematic dynamo problem

International Nuclear Information System (INIS)

Schekochihin, A.A.; Kulsrud, R.M.

2000-01-01

One-point statistics of the magnetic fluctuations in kinematic regime with large Prandtl number and non delta-correlated in time advecting velocity field are studied. A perturbation expansion in the ratio of the velocity correlation time to the dynamo growth time is constructed in the spirit of the Kliatskin-Tatarskii functional method and carried out to first order. The convergence properties are improved compared to the commonly used van Kampen-Terwiel method. The zeroth-order growth rate of the magnetic energy is estimated to be reduced (in three dimensions) by approximately 40%. This reduction is quite close to existing numerical results

Dynamo dominated accretion and energy flow: The mechanism of active galactic nuclei

Energy Technology Data Exchange (ETDEWEB)

Colgate, S.A.; Li, H.

1998-12-31

An explanation of the magnetic fields of the universe, the central mass concentration of galaxies, the massive black hole of every galaxy, and the AGN phenomena has been an elusive goal. The authors suggest here the outlines of such a theoretical understanding and point out where the physical understanding is missing. They believe there is an imperative to the sequence of mass flow and hence energy flow in the collapse of a galactic mass starting from the first non-linearity appearing in structure formation following decoupling. This first non-linearity of a two to one density fluctuation, the Lyman-{alpha} clouds, ultimately leads to the emission spectra of the phenomenon of AGN, quasars, blazars, etc. The over-arching physical principle is the various mechanisms for the transport of angular momentum. They believe they have now understood the new physics of two of these mechanisms that have previously been illusive and as a consequence they impose strong constraints on the initial conditions of the mechanisms for the subsequent emission of the gravitational binding energy. The new phenomena described are: (1) the Rossby vortex mechanism of the accretion disk {alpha}-viscosity, and (2) the mechanism of the {alpha}-{Omega} dynamo in the accretion disk. The Rossby vortex mechanism leads to a prediction of the black hole mass and rate of energy release and the {alpha}-{Omega} dynamo leads to the generation of the magnetic flux of the galaxy (and the far greater magnetic flux of clusters) and separately explains the primary flux of energy emission as force-free magnetic energy density. This magnetic flux and magnetic energy density separately are the necessary consequence of the saturation of a dynamo created by the accretion disk with a gain greater than unity.

The importance of wind-flux feedbacks during the November CINDY-DYNAMO MJO event

Science.gov (United States)

Riley Dellaripa, Emily; Maloney, Eric; van den Heever, Susan

2015-04-01

High-resolution, large-domain cloud resolving model (CRM) simulations probing the importance of wind-flux feedbacks to Madden-Julian Oscillation (MJO) convection are performed for the November 2011 CINDY-DYNAMO MJO event. The work is motivated by observational analysis from RAMA buoys in the Indian Ocean and TRMM precipitation retrievals that show a positive correlation between MJO precipitation and wind-induced surface fluxes, especially latent heat fluxes, during and beyond the CINDY-DYNAMO time period. Simulations are done using Colorado State University's Regional Atmospheric Modeling System (RAMS). The domain setup is oceanic and spans 1000 km x 1000 km with 1.5 km horizontal resolution and 65 stretched vertical levels centered on the location of Gan Island - one of the major CINDY-DYNAMO observation points. The model is initialized with ECMWF reanalysis and Aqua MODIS sea surface temperatures. Nudging from ECMWF reanalysis is applied at the domain periphery to encourage realistic evolution of MJO convection. The control experiment is run for the entire month of November so both suppressed and active, as well as, transitional phases of the MJO are modeled. In the control experiment, wind-induced surface fluxes are activated through the surface bulk aerodynamic formula and allowed to evolve organically. Sensitivity experiments are done by restarting the control run one week into the simulation and controlling the wind-induced flux feedbacks. In one sensitivity experiment, wind-induced surface flux feedbacks are completely denied, while in another experiment the winds are kept constant at the control simulations mean surface wind speed. The evolution of convection, especially on the mesoscale, is compared between the control and sensitivity simulations.

Chaotic Dynamos Generated by a Turbulent Flow of Liquid Sodium

International Nuclear Information System (INIS)

Ravelet, F.; Monchaux, R.; Aumaitre, S.; Chiffaudel, A.; Daviaud, F.; Dubrulle, B.; Berhanu, M.; Fauve, S.; Mordant, N.; Petrelis, F.; Bourgoin, M.; Odier, Ph.; Plihon, N.; Pinton, J.-F.; Volk, R.

2008-01-01

We report the observation of several dynamical regimes of the magnetic field generated by a turbulent flow of liquid sodium (VKS experiment). Stationary dynamos, transitions to relaxation cycles or to intermittent bursts, and random field reversals occur in a fairly small range of parameters. Large scale dynamics of the magnetic field result from the interactions of a few modes. The low dimensional nature of these dynamics is not smeared out by the very strong turbulent fluctuations of the flow

A mechanism for the dynamo terms to sustain closed-flux current, including helicity balance, by driving current which crosses the magnetic field

Energy Technology Data Exchange (ETDEWEB)

Jarboe, T. R.; Nelson, B. A.; Sutherland, D. A. [University of Washington, Seattle, Washington 98195 (United States)

2015-07-15

An analysis of imposed dynamo current drive (IDCD) [T.R. Jarboe et al., Nucl. Fusion 52 083017 (2012)] reveals: (a) current drive on closed flux surfaces seems possible without relaxation, reconnection, or other flux-surface-breaking large events; (b) the scale size of the key physics may be smaller than is often computationally resolved; (c) helicity can be sustained across closed flux; and (d) IDCD current drive is parallel to the current which crosses the magnetic field to produce the current driving force. In addition to agreeing with spheromak data, IDCD agrees with selected tokamak data.

Dynamo: A Model Transition Framework for Dynamic Stability Control and Body Mass Manipulation

Science.gov (United States)

2011-11-01

driving at high speed, and you turn the steering wheel hard to the right and slam on the brakes, then you will end up in the oversteer regime. At the...sensors (GPS, IMU, LIDAR ) for vehicle control. Figure 17: Dynamo high-speed small UGV hardware platform We will perform experiments to measure the MTC

Turbulent Dynamo Amplification of Magnetic Fields in Laser-Produced Plasmas: Simulations and Experiments

Science.gov (United States)

Tzeferacos, P.; Rigby, A.; Bott, A.; Bell, A.; Bingham, R.; Casner, A.; Cattaneo, F.; Churazov, E.; Forest, C.; Katz, J.; Koenig, M.; Li, C.-K.; Meinecke, J.; Petrasso, R.; Park, H.-S.; Remington, B.; Ross, J.; Ryutov, D.; Ryu, D.; Reville, B.; Miniati, F.; Schekochihin, A.; Froula, D.; Lamb, D.; Gregori, G.

2017-10-01

The universe is permeated by magnetic fields, with strengths ranging from a femtogauss in the voids between the filaments of galaxy clusters to several teragauss in black holes and neutron stars. The standard model for cosmological magnetic fields is the nonlinear amplification of seed fields via turbulent dynamo. We have conceived experiments to demonstrate and study the turbulent dynamo mechanism in the laboratory. Here, we describe the design of these experiments through large-scale 3D FLASH simulations on the Mira supercomputer at ANL, and the laser-driven experiments we conducted with the OMEGA laser at LLE. Our results indicate that turbulence is capable of rapidly amplifying seed fields to near equipartition with the turbulent fluid motions. This work was supported in part from the ERC (FP7/2007-2013, No. 256973 and 247039), and the U.S. DOE, Contract No. B591485 to LLNL, FWP 57789 to ANL, Grant No. DE-NA0002724 and DE-SC0016566 to the University of Chicago, and DE-AC02-06CH11357 to ANL.

RED DWARF DYNAMO RAISES PUZZLE OVER INTERIORS OF LOWEST-MASS STARS

Science.gov (United States)

2002-01-01

NASA's Hubble Space Telescope has uncovered surprising evidence that powerful magnetic fields might exist around the lowest mass stars in the universe, which are near the threshold of stellar burning processes. 'New theories will have to be developed to explain how these strong fields are produced, since conventional models predict that these low mass red dwarfs should have very weak or no magnetic fields,' says Dr. Jeffrey Linsky of the Joint Institute for Laboratory Astrophysics (JILA) in Boulder, Colorado. 'The Hubble observations provide clear evidence that very low mass red dwarf stars must have some form of dynamo to amplify their magnetic fields.' His conclusions are based upon Hubble's detection of a high-temperature outburst, called a flare, on the surface of the extremely small, cool red dwarf star Van Biesbroeck 10 (VB10) also known as Gliese 752B. Stellar flares are caused by intense, twisted magnetic fields that accelerate and contain gasses which are much hotter than a star's surface. Explosive flares are common on the Sun and expected for stars that have internal structures similar to our Sun's. Stars as small as VB10 are predicted to have a simpler internal structure than that of the Sun and so are not expected to generate the electric currents required for magnetic fields that drive flares. Besides leading to a clearer understanding of the interior structure of the smallest red dwarf stars known, these unexpected results might possibly shed light on brown dwarf stars. A brown dwarf is a long-sought class of astronomical object that is too small to shine like a star through nuclear fusion processes, but is too large to be considered a planet. 'Since VB10 is nearly a brown dwarf, it is likely brown dwarfs also have strong magnetic fields,' says Linsky. 'Additional Hubble searches for flares are needed to confirm this prediction.' A QUARTER-MILLION DEGREE TORCH The star VB10 and its companion star Gliese 752A make up a binary system located 19 light

Integration of Environmental Sensors with BIM: case studies using Arduino, Dynamo, and the Revit API

Directory of Open Access Journals (Sweden)

Kensek, K. M.

2014-12-01

Full Text Available This paper investigates the feasibility of connecting environmental sensors such as light, humidity, or CO2 receptors to a building information model (BIM. A base case was created in Rhino; using Grasshopper and Firefly, a simple digital model responded to lighting-levels detected by a photoresistor on an Arduino board. The case study was duplicated using Revit Architecture, a popular BIM software, and Dynamo, a visual programming environment, in an innovative application. Another case study followed a similar procedure by implementing the Revit API directly instead of using Dynamo. Then the process was reversed to demonstrate that not only could data could be sent from sensors to change the 3D model, but changes to parameters of a 3D model could effect a physical model through the use of actuators. It is intended that these virtual/physical prototypes could be used as the basis for testing intelligent façade systems before constructing full size mock-ups.Este estudio investiga la posibilidad de conectar sensores ambientales como de luz, humedad, o dióxido de carbono con un modelo de información de un edificio (siglas BIM en inglés. Un caso base fue creado en Rhino; usando Grasshopper and Firefly, donde un simple modelo digital respondió a niveles de luz detectados por un foto resistor en una tarjeta Arduino. El caso de estudio fue duplicado usando Revit Architecture, una herramienta popular en BIM, y Dynamo, un ambiente de programación gráfica, en una creativa aplicación. Un segundo caso de estudio siguió un procedimiento similar implementando Revit API directamente en vez de usar Dynamo. Entonces el proceso fue revertido para demostrar que no solamente la información podría ser enviada desde sensores para cambiar el modelo tridimensional, pero cambios en los parámetros de un modelo tridimensional podrían afectar un modelo físico mediante el uso de actuadores. Se espera que esos modelos virtuales puedan ser usados como base para

Magnetism, dynamo action and the solar-stellar connection

Directory of Open Access Journals (Sweden)

Allan Sacha Brun

2017-09-01

Full Text Available Abstract The Sun and other stars are magnetic: magnetism pervades their interiors and affects their evolution in a variety of ways. In the Sun, both the fields themselves and their influence on other phenomena can be uncovered in exquisite detail, but these observations sample only a moment in a single star’s life. By turning to observations of other stars, and to theory and simulation, we may infer other aspects of the magnetism—e.g., its dependence on stellar age, mass, or rotation rate—that would be invisible from close study of the Sun alone. Here, we review observations and theory of magnetism in the Sun and other stars, with a partial focus on the “Solar-stellar connection”: i.e., ways in which studies of other stars have influenced our understanding of the Sun and vice versa. We briefly review techniques by which magnetic fields can be measured (or their presence otherwise inferred in stars, and then highlight some key observational findings uncovered by such measurements, focusing (in many cases on those that offer particularly direct constraints on theories of how the fields are built and maintained. We turn then to a discussion of how the fields arise in different objects: first, we summarize some essential elements of convection and dynamo theory, including a very brief discussion of mean-field theory and related concepts. Next we turn to simulations of convection and magnetism in stellar interiors, highlighting both some peculiarities of field generation in different types of stars and some unifying physical processes that likely influence dynamo action in general. We conclude with a brief summary of what we have learned, and a sampling of issues that remain uncertain or unsolved.

Introduction to Plasma Dynamo, Reconnection and Shocks

Energy Technology Data Exchange (ETDEWEB)

Intrator, Thomas P. [Los Alamos National Laboratory

2012-08-30

In our plasma universe, most of what we can observe is composed of ionized gas, or plasma. This plasma is a conducting fluid, which advects magnetic fields when it flows. Magnetic structure occurs from the smallest planetary to the largest cosmic scales. We introduce at a basic level some interesting features of non linear magnetohydrodynamics (MHD). For example, in our plasma universe, dynamo creates magnetic fields from gravitationally driven flow energy in an electrically conducting medium, and conversely magnetic reconnection annihilates magnetic field and accelerates particles. Shocks occur when flows move faster than the local velocity (sonic or Alfven speed) for the propagation of information. Both reconnection and shocks can accelerate particles, perhaps to gigantic energies, for example as observed with 10{sup 20} eV cosmic rays.

Understanding Short-Term Nonmigrating Tidal Variability in the Ionospheric Dynamo Region from SABER Using Information Theory and Bayesian Statistics

Science.gov (United States)

Kumari, K.; Oberheide, J.

2017-12-01

Nonmigrating tidal diagnostics of SABER temperature observations in the ionospheric dynamo region reveal a large amount of variability on time-scales of a few days to weeks. In this paper, we discuss the physical reasons for the observed short-term tidal variability using a novel approach based on Information theory and Bayesian statistics. We diagnose short-term tidal variability as a function of season, QBO, ENSO, and solar cycle and other drivers using time dependent probability density functions, Shannon entropy and Kullback-Leibler divergence. The statistical significance of the approach and its predictive capability is exemplified using SABER tidal diagnostics with emphasis on the responses to the QBO and solar cycle. Implications for F-region plasma density will be discussed.

Evidence favoring an internally generated dynamo in the H chondrite parent planetesimal from the Forest Vale meteorite

Science.gov (United States)

Getzin, B. L.; Bryson, J. F. J.; Weiss, B. P.; Gattacceca, J.

2016-12-01

Chondritic meteorites are traditionally assumed to originate from undifferentiated asteroids due to their unmelted texture and composition. This implies that their parent bodies should not have formed a core or generated a dynamo. However, recent measurements of the H chondrite Portales Valley (Bryson et al., this meeting) observed post-accretional remanent magnetization interpreted as a record of a core dynamo, indicating that some chondrite parent bodies were partially differentiated. However, it has been proposed that the H chondrites may have been magnetized instead by a crustal remanent field. If this crustal magnetization was imparted by an early external source, such as nebular fields or even the solar wind, then the magnetization of H chondrites may not require a core dynamo. To test this hypothesis, we measured the magnetic properties of the Forest Vale H4 ordinary chondrite. Forest Vale cooled quickly (10000 K/My) and so would have acquired magnetization that represents the bulk of the H chondrite parent body's crust during the first 10 My of the solar system. Based on alternating field and pressure demagnetization experiments of natural remanent magnetization (NRM) and anhysteretic remanent magnetization, we conclude that Forest Vale contains no ancient magnetization and, due to its poor intrinsic magnetic recording properties, is unable to acquire a magnetization that is stable against even weak shocks (0.2 GPa). Furthermore, we show that a crust composed of Forest-Vale-like material magnetized by the upper limit field intensities expected for the nebula and solar wind fields (50 μT and 1 μT, respectively) produces an insufficient crustal remanent field (<2.5 μT and <0.045 μT, respectively) to explain the paleointensity recorded by Portales Valley ( 10 μT). Thus, we conclude that the field that magnetization Portales Valley is unlikely to be from a crustal remanence magnetized by early external fields, favoring a partially differentiated asteroid

Generation of dynamo waves by spatially separated sources in the Earth and other celestial bodies

Science.gov (United States)

Popova, E.

2017-12-01

The amplitude and the spatial configuration of the planetary and stellar magnetic field can changing over the years. Celestial bodies can have cyclic, chaotic or unchanging in time magnetic activity which is connected with a dynamo mechanism. This mechanism is based on the consideration of the joint influence of the alpha-effect and differential rotation. Dynamo sources can be located at different depths (active layers) of the celestial body and can have different intensities. Application of this concept allows us to get different forms of solutions and some of which can include wave propagating inside the celestial body. We analytically showed that in the case of spatially separated sources of magnetic field each source generates a wave whose frequency depends on the physical parameters of its source. We estimated parameters of sources required for the generation nondecaying waves. We discus structure of such sources and matter motion (including meridional circulation) in the liquid outer core of the Earth and active layers of other celestial bodies.

TURBULENCE AND DYNAMO IN GALAXY CLUSTER MEDIUM: IMPLICATIONS ON THE ORIGIN OF CLUSTER MAGNETIC FIELDS

International Nuclear Information System (INIS)

Xu Hao; Collins, David C.; Norman, Michael L.; Li Hui; Li Shengtai

2009-01-01

We present self-consistent cosmological magnetohydrodynamic (MHD) simulations that simultaneously follow the formation of a galaxy cluster and the magnetic field ejection by an active galactic nucleus (AGN). We find that the magnetic fields ejected by the AGNs, though initially distributed in relatively small volumes, can be transported throughout the cluster and be further amplified by the intracluster medium (ICM) turbulence during the cluster formation process. The ICM turbulence is shown to be generated and sustained by the frequent mergers of smaller halos. Furthermore, a cluster-wide dynamo process is shown to exist in the ICM and amplify the magnetic field energy and flux. The total magnetic energy in the cluster can reach ∼10 61 erg while micro Gauss (μG) fields can distribute over ∼ Mpc scales throughout the whole cluster. This finding shows that magnetic fields from AGNs, being further amplified by the ICM turbulence through small-scale dynamo processes, can be the origin of cluster-wide magnetic fields.

An analytic interface dynamo over a shear layer of finite depth

OpenAIRE

Petrovay, K.; Kerekes, A.; Erdélyi, R.

2010-01-01

Parker's analytic Cartesian interface dynamo is generalized to the case of a shear layer of finite thickness and low resistivity ("tachocline"), bounded by a perfect conductor ("radiative zone") on the one side, and by a highly diffusive medium ("convective zone") supporting an $\\alpha$-effect on the other side. In the limit of high diffusivity contrast between the shear layer and the diffusive medium, thought to be relevant for the Sun, a pair of exact dispersion relations for the growth rat...

Angular momentum transport and dynamo action in the sun - Implications of recent oscillation measurements

International Nuclear Information System (INIS)

Gilman, P. A.; Morrow, C. A.; Deluca, E. E.

1989-01-01

The implications of a newly proposed picture of the sun's internal rotation (Brown et al., 1989; Morrow, 1988) for the distribution and transport of angular momentum and for the solar dynamo are considered. The new results, derived from an analysis of solar acoustic oscillations, affect understanding of how momentum is cycled in the sun and provide clues as to how and where the solar dynamo is driven. The data imply that the only significant radial gradient of angular velocity exists in a transitional region between the bottom of the convection zone, which is rotating like the solar surface, and the top of the deep interior, which is rotating rigidly at a rate intermediate between the equatorial and polar rates at the surface. Thus the radial gradient must change sign at the latitude where the angular velocity of the surface matches that of the interior. These inferences suggest that the cycle of angular momentum that produces the observed latitudinal differential rotation in the convection zone may be coupled to layers of the interior beneath the convection zone. 35 refs

Solar Cycle Variability Induced by Tilt Angle Scatter in a Babcock-Leighton Solar Dynamo Model

Science.gov (United States)

Karak, Bidya Binay; Miesch, Mark

2017-09-01

We present results from a three-dimensional Babcock-Leighton (BL) dynamo model that is sustained by the emergence and dispersal of bipolar magnetic regions (BMRs). On average, each BMR has a systematic tilt given by Joy’s law. Randomness and nonlinearity in the BMR emergence of our model produce variable magnetic cycles. However, when we allow for a random scatter in the tilt angle to mimic the observed departures from Joy’s law, we find more variability in the magnetic cycles. We find that the observed standard deviation in Joy’s law of {σ }δ =15^\\circ produces a variability comparable to the observed solar cycle variability of ˜32%, as quantified by the sunspot number maxima between 1755 and 2008. We also find that tilt angle scatter can promote grand minima and grand maxima. The time spent in grand minima for {σ }δ =15^\\circ is somewhat less than that inferred for the Sun from cosmogenic isotopes (about 9% compared to 17%). However, when we double the tilt scatter to {σ }δ =30^\\circ , the simulation statistics are comparable to the Sun (˜18% of the time in grand minima and ˜10% in grand maxima). Though the BL mechanism is the only source of poloidal field, we find that our simulations always maintain magnetic cycles even at large fluctuations in the tilt angle. We also demonstrate that tilt quenching is a viable and efficient mechanism for dynamo saturation; a suppression of the tilt by only 1°-2° is sufficient to limit the dynamo growth. Thus, any potential observational signatures of tilt quenching in the Sun may be subtle.

Exact axially symmetric galactic dynamos

Science.gov (United States)

Henriksen, R. N.; Woodfinden, A.; Irwin, J. A.

2018-05-01

We give a selection of exact dynamos in axial symmetry on a galactic scale. These include some steady examples, at least one of which is wholly analytic in terms of simple functions and has been discussed elsewhere. Most solutions are found in terms of special functions, such as associated Lagrange or hypergeometric functions. They may be considered exact in the sense that they are known to any desired accuracy in principle. The new aspect developed here is to present scale-invariant solutions with zero resistivity that are self-similar in time. The time dependence is either a power law or an exponential factor, but since the geometry of the solution is self-similar in time we do not need to fix a time to study it. Several examples are discussed. Our results demonstrate (without the need to invoke any other mechanisms) X-shaped magnetic fields and (axially symmetric) magnetic spiral arms (both of which are well observed and documented) and predict reversing rotation measures in galaxy haloes (now observed in the CHANG-ES sample) as well as the fact that planar magnetic spirals are lifted into the galactic halo.

The nonlinear differential equations governing a hierarchy of self-exciting coupled Faraday-disk homopolar dynamos

Science.gov (United States)

Hide, Raymond

1997-02-01

This paper discusses the derivation of the autonomous sets of dimensionless nonlinear ordinary differential equations (ODE's) that govern the behaviour of a hierarchy of related electro-mechanical self-exciting Faraday-disk homopolar dynamo systems driven by steady mechanical couples. Each system comprises N interacting units which could be arranged in a ring or lattice. Within each unit and connected in parallel or in series with the coil are electric motors driven into motion by the dynamo, all having linear characteristics, so that nonlinearity arises entirely through the coupling between components. By introducing simple extra terms into the equations it is possible to represent biasing effects arising from impressed electromotive forces due to thermoelectric or chemical processes and from the presence of ambient magnetic fields. Dissipation in the system is due not only to ohmic heating but also to mechanical friction in the disk and the motors, with the latter agency, no matter how weak, playing an unexpectedly crucial rôle in the production of régimes of chaotic behaviour. This has already been demonstrated in recent work on a case of a single unit incorporating just one series motor, which is governed by a novel autonomous set of nonlinear ODE's with three time-dependent variables and four control parameters. It will be of mathematical as well as geophysical and astrophysical interest to investigate systematically phase and amplitude locking and other types of behaviour in the more complicated cases that arise when N > 1, which can typically involve up to 6 N dependent variables and 19 N-5 control parameters. Even the simplest members of the hierarchy, with N as low as 1, 2 or 3, could prove useful as physically-realistic low-dimensional models in theoretical studies of fluctuating stellar and planetary magnetic fields. Geomagnetic polarity reversals could be affected by the presence of the Earth's solid metallic inner core, driven like an electric motor

Tidal excitation of elliptical instability in the Martian core: Possible mechanism for generating the core dynamo

Science.gov (United States)

Arkani-Hamed, J.; Seyed-Mahmoud, B.; Aldridge, K. D.; Baker, R. E.

2008-06-01

We propose a causal relationship between the creation of the giant impact basins on Mars by a large asteroid, ruptured when it entered the Roche limit, and the excitation of the Martian core dynamo. Our laboratory experiments indicate that the elliptical instability of the Martian core can be excited if the asteroid continually exerts tidal forces on Mars for ~20,000 years. Our numerical experiments suggest that the growth-time of the instability was 5,000-15,000 years when the asteroid was at a distance of 50,000-75,000 km. We demonstrate the stability of the orbital motion of an asteroid captured by Mars at a distance of 100,000 km in the presence of the Sun and Jupiter. We also present our results for the tidal interaction of the asteroid with Mars. An asteroid captured by Mars in prograde fashion can survive and excite the elliptical instability of the core for only a few million years, whereas a captured retrograde asteroid can excite the elliptical instability for hundreds of millions of years before colliding with Mars. The rate at which tidal energy dissipates in Mars during this period is over two orders of magnitude greater than the rate at which magnetic energy dissipates. If only 1% of the tidal energy dissipation is partitioned to the core, sufficient energy would be available to maintain the core dynamo. Accordingly, a retrograde asteroid is quite capable of exciting an elliptical instability in the Martian core, thus providing a candidate process to drive a core dynamo.

A model of the solar cycle driven by the dynamo action of the global convection in the solar convection zone

International Nuclear Information System (INIS)

Yoshimura, H.

1976-01-01

Extensive numerical studies of the dynamo equations due to the global convection are presented to simulate the solar cycle and to open the way to study general stellar magnetic cycles. The dynamo equations which represent the longitudinally-averaged magnetohydrodynamical action (mean magnetohydrodynamics) of the global convection under the influence of the rotation in the solar convection zone are considered here as an initial boundary-value problem. The latitudinal and radial structure of the dynamo action consisting of a generation action due to the differential rotation and a regeneration action due to the global convection is parameterized in accordance with the structure of the rotation and of the global convection. This is done especially in such a way as to represent the presence of the two cells of the regeneration action in the radial direction in which the action has opposite signs, which is typical of the regeneration action of the global convection. The effects of the dynamics of the global convection (e.g., the effects of the stratification of the physical conditions in the solar convection zone) are presumed to be all included in those parameters used in the model and they are presumed not to alter the results drastically since these effects are only to change the structure of the regeneration action topologically. (Auth.)

Role of asymmetric meridional circulation in producing north-south asymmetry in a solar cycle dynamo model

Energy Technology Data Exchange (ETDEWEB)

Belucz, Bernadett [Eötvös University, Department of Astronomy, 1518 Budapest, Pf. 32 (Hungary); Dikpati, Mausumi [High Altitude Observatory, National Center for Atmospheric Research, 3080 Center Green, Boulder, CO 80307-3000 (United States)

2013-12-10

Solar cycles in the north and south hemispheres differ in cycle length, amplitude, profile, polar fields, and coronal structure. To show what role differences in meridional flow could play in producing these differences, we present the results of three sets of numerical simulations from a flux transport dynamo in which one property of meridional circulation has been changed in the south only. The changes are in amplitude and the presence of a second cell in latitude or in depth. An ascending phase speedup causes weakening of polar and toroidal fields; a speed decrease in a late descending phase does not change amplitudes. A long-duration speed increase leads to lower toroidal field peaks but unchanged polar field peaks. A second high-latitude circulation cell in an ascending phase weakens the next polar and toroidal field peaks, and the ascending phase is lengthened. A second cell in a late descending phase speeds up the cycle. A long-duration second cell leads to a poleward branch of the butterfly diagram and weaker polar fields. A second cell in depth reverses the tilt of the butterfly wing, decreasing polar fields when added during an ascending phase and increasing them during a late descending phase. A long-duration presence of a second cell in radius evolves the butterfly diagram far away from the observed one, with different dynamo periods in low and high latitudes. Thus, a second cell in depth is unlikely to persist more than a few years if the solar dynamo is advection-dominated. Our results show the importance of time variation and north-south asymmetry in meridional circulation in producing differing cycles in the north and south.

Role of asymmetric meridional circulation in producing north-south asymmetry in a solar cycle dynamo model

International Nuclear Information System (INIS)

Belucz, Bernadett; Dikpati, Mausumi

2013-01-01

Solar cycles in the north and south hemispheres differ in cycle length, amplitude, profile, polar fields, and coronal structure. To show what role differences in meridional flow could play in producing these differences, we present the results of three sets of numerical simulations from a flux transport dynamo in which one property of meridional circulation has been changed in the south only. The changes are in amplitude and the presence of a second cell in latitude or in depth. An ascending phase speedup causes weakening of polar and toroidal fields; a speed decrease in a late descending phase does not change amplitudes. A long-duration speed increase leads to lower toroidal field peaks but unchanged polar field peaks. A second high-latitude circulation cell in an ascending phase weakens the next polar and toroidal field peaks, and the ascending phase is lengthened. A second cell in a late descending phase speeds up the cycle. A long-duration second cell leads to a poleward branch of the butterfly diagram and weaker polar fields. A second cell in depth reverses the tilt of the butterfly wing, decreasing polar fields when added during an ascending phase and increasing them during a late descending phase. A long-duration presence of a second cell in radius evolves the butterfly diagram far away from the observed one, with different dynamo periods in low and high latitudes. Thus, a second cell in depth is unlikely to persist more than a few years if the solar dynamo is advection-dominated. Our results show the importance of time variation and north-south asymmetry in meridional circulation in producing differing cycles in the north and south.

Multivariate pattern classification reveals autonomic and experiential representations of discrete emotions.

Science.gov (United States)

Kragel, Philip A; Labar, Kevin S

2013-08-01

Defining the structural organization of emotions is a central unresolved question in affective science. In particular, the extent to which autonomic nervous system activity signifies distinct affective states remains controversial. Most prior research on this topic has used univariate statistical approaches in attempts to classify emotions from psychophysiological data. In the present study, electrodermal, cardiac, respiratory, and gastric activity, as well as self-report measures were taken from healthy subjects during the experience of fear, anger, sadness, surprise, contentment, and amusement in response to film and music clips. Information pertaining to affective states present in these response patterns was analyzed using multivariate pattern classification techniques. Overall accuracy for classifying distinct affective states was 58.0% for autonomic measures and 88.2% for self-report measures, both of which were significantly above chance. Further, examining the error distribution of classifiers revealed that the dimensions of valence and arousal selectively contributed to decoding emotional states from self-report, whereas a categorical configuration of affective space was evident in both self-report and autonomic measures. Taken together, these findings extend recent multivariate approaches to study emotion and indicate that pattern classification tools may improve upon univariate approaches to reveal the underlying structure of emotional experience and physiological expression. PsycINFO Database Record (c) 2013 APA, all rights reserved.

RIEGER-TYPE PERIODICITY DURING SOLAR CYCLES 14–24: ESTIMATION OF DYNAMO MAGNETIC FIELD STRENGTH IN THE SOLAR INTERIOR

Energy Technology Data Exchange (ETDEWEB)

Gurgenashvili, Eka; Zaqarashvili, Teimuraz V.; Kukhianidze, Vasil; Ramishvili, Giorgi; Shergelashvili, Bidzina [Abastumani Astrophysical Observatory at Ilia State University, Tbilisi, Georgia (United States); Oliver, Ramon; Ballester, Jose Luis [Departament de Física, Universitat de les Illes Balears, E-07122, Palma de Mallorca (Spain); Hanslmeier, Arnold [IGAM, Institute of Physics, University of Graz, Universitätsplatz 5, A-8010 Graz (Austria); Poedts, Stefaan, E-mail: teimuraz.zaqarashvili@uni-graz.at [Centre for Mathematical Plasma Astrophysics, Department of Mathematics, KU Leuven, Celestijnenlaan 200B, B-3001, Leuven (Belgium)

2016-07-20

Solar activity undergoes a variation over timescales of several months known as Rieger-type periodicity, which usually occurs near maxima of sunspot cycles. An early analysis showed that the periodicity appears only in some cycles and is absent in other cycles. But the appearance/absence during different cycles has not been explained. We performed a wavelet analysis of sunspot data from the Greenwich Royal Observatory and the Royal Observatory of Belgium during cycles 14–24. We found that the Rieger-type periods occur in all cycles, but they are cycle dependent: shorter periods occur during stronger cycles. Our analysis revealed a periodicity of 185–195 days during the weak cycles 14–15 and 24 and a periodicity of 155–165 days during the stronger cycles 16–23. We derived the dispersion relation of the spherical harmonics of the magnetic Rossby waves in the presence of differential rotation and a toroidal magnetic field in the dynamo layer near the base of the convection zone. This showed that the harmonics of fast Rossby waves with m = 1 and n = 4, where m ( n ) indicates the toroidal (poloidal) wavenumbers, perfectly fit with the observed periodicity. The variation of the toroidal field strength from weaker to stronger cycles may lead to the different periods found in those cycles, which explains the observed enigmatic feature of the Rieger-type periodicity. Finally, we used the observed periodicity to estimate the dynamo field strength during cycles 14–24. Our estimations suggest a field strength of ∼40 kG for the stronger cycles and ∼20 kG for the weaker cycles.

Computer simulation of a magnetohydrodynamic dynamo II

International Nuclear Information System (INIS)

Kageyama, Akira; Sato, Tetsuya.

1994-11-01

We performed a computer simulation of a magnetohydrodynamic dynamo in a rapidly rotating spherical shell. Extensive parameter runs are carried out changing the electrical resistivity. It is found that the total magnetic energy can grow more than ten times larger than the total kinetic energy of the convection motion when the resistivity is sufficiently small. When the resistivity is relatively large and the magnetic energy is comparable or smaller than the kinetic energy, the convection motion maintains its well-organized structure. However, when the resistivity is small and the magnetic energy becomes larger than the kinetic energy, the well-organized convection motion is highly disturbed. The generated magnetic field is organized as a set of flux tubes which can be divided into two categories. The magnetic field component parallel to the rotation axis tends to be confined inside the anticyclonic columnar convection cells. On the other hand, the component perpendicular to the rotation axis is confined outside the convection cells. (author)

Social patterns revealed through random matrix theory

Science.gov (United States)

Sarkar, Camellia; Jalan, Sarika

2014-11-01

Despite the tremendous advancements in the field of network theory, very few studies have taken weights in the interactions into consideration that emerge naturally in all real-world systems. Using random matrix analysis of a weighted social network, we demonstrate the profound impact of weights in interactions on emerging structural properties. The analysis reveals that randomness existing in particular time frame affects the decisions of individuals rendering them more freedom of choice in situations of financial security. While the structural organization of networks remains the same throughout all datasets, random matrix theory provides insight into the interaction pattern of individuals of the society in situations of crisis. It has also been contemplated that individual accountability in terms of weighted interactions remains as a key to success unless segregation of tasks comes into play.

Distribution patterns of firearm discharge residues as revealed by neutron activation analysis

International Nuclear Information System (INIS)

Pillay, K.K.S.; Driscoll, D.C.; Jester, W.A.

1975-01-01

A systematic investigation using a variety of handguns has revealed the existence of distinguisable distribution patterns of firearm discharge residues on surfaces below the flight path of a bullet. The residues are identificable even at distances of 12 meters from the gun using nondestructive neutron activation analysis. The results of these investigations show that the distribution pattern for a gun is reproducible using similar ammunition and that there exist two distinct regions to the patterns developed between the firearm and the target-one with respect to the position of the gun and the other in the vicinity of the target. The judicious applications of these findings could be of significant value in criminal investigations. (T.G.)

Using dynamo theory to predict the sunspot number during solar cycle 21

Science.gov (United States)

Schatten, K. H.; Scherrer, P. H.; Svalgaard, L.; Wilcox, J. M.

1978-01-01

On physical grounds it is suggested that the polar field strength of the sun near a solar minimum is closely related to the solar activity of the following cycle. Four methods of estimating the polar magnetic field strength of the sun near solar minimum are employed to provide an estimate of the yearly mean sunspot number of cycle 21 at solar maximum of 140 + or - 20. This estimate may be considered a first-order attempt to predict the cycle activity using one parameter of physical importance based upon dynamo theory.

A Filtering Method to Reveal Crystalline Patterns from Atom Probe Microscopy Desorption Maps

Science.gov (United States)

2016-03-26

reveal crystalline patterns from atom probe microscopy desorption maps Lan Yao Department of Materials Science and Engineering, University of Michigan, Ann...reveal the crystallographic information present in Atom Probe Microscopy (APM) data is presented. Themethod filters atoms based on the time difference...between their evaporation and the evaporation of the previous atom . Since this time difference correlates with the location and the local structure of

TreeNetViz: revealing patterns of networks over tree structures.

Science.gov (United States)

Gou, Liang; Zhang, Xiaolong Luke

2011-12-01

Network data often contain important attributes from various dimensions such as social affiliations and areas of expertise in a social network. If such attributes exhibit a tree structure, visualizing a compound graph consisting of tree and network structures becomes complicated. How to visually reveal patterns of a network over a tree has not been fully studied. In this paper, we propose a compound graph model, TreeNet, to support visualization and analysis of a network at multiple levels of aggregation over a tree. We also present a visualization design, TreeNetViz, to offer the multiscale and cross-scale exploration and interaction of a TreeNet graph. TreeNetViz uses a Radial, Space-Filling (RSF) visualization to represent the tree structure, a circle layout with novel optimization to show aggregated networks derived from TreeNet, and an edge bundling technique to reduce visual complexity. Our circular layout algorithm reduces both total edge-crossings and edge length and also considers hierarchical structure constraints and edge weight in a TreeNet graph. These experiments illustrate that the algorithm can reduce visual cluttering in TreeNet graphs. Our case study also shows that TreeNetViz has the potential to support the analysis of a compound graph by revealing multiscale and cross-scale network patterns. © 2011 IEEE

NONLINEAR DYNAMO IN A ROTATING ELECTRICALLY CONDUCTING FLUID

Directory of Open Access Journals (Sweden)

M. I. Kopp

2017-05-01

Full Text Available We found a new large-scale instability, which arises in the rotating conductive fluid with small-scale turbulence. Turbulence is generated by small-scale external force with a low Reynolds number. The theory is built simply by the method of multiscale asymptotic expansions. Nonlinear equations for vortex and magnetic perturbations obtained in the third order for small Reynolds number. It is shown that the combined effects of the Coriolis force and the small external forces in a rotating conducting fluid possible large-scale instability. The large-scale increments of the instability, correspond to generation as the vortex and magnetic disturbances. This type of instability is classified as hydrodynamic and MHD alpha-effect. We studied the stationary regimes of nonlinear equations of magneto-vortex dynamo. In the limit of weakly conducting fluid found stationary solutions in the form of helical kinks. In the limit of high conductivity fluid was obtained stationary solutions in the form of nonlinear periodic waves and kinks.

Hidden hyperchaos and electronic circuit application in a 5D self-exciting homopolar disc dynamo

Science.gov (United States)

Wei, Zhouchao; Moroz, Irene; Sprott, J. C.; Akgul, Akif; Zhang, Wei

2017-03-01

We report on the finding of hidden hyperchaos in a 5D extension to a known 3D self-exciting homopolar disc dynamo. The hidden hyperchaos is identified through three positive Lyapunov exponents under the condition that the proposed model has just two stable equilibrium states in certain regions of parameter space. The new 5D hyperchaotic self-exciting homopolar disc dynamo has multiple attractors including point attractors, limit cycles, quasi-periodic dynamics, hidden chaos or hyperchaos, as well as coexisting attractors. We use numerical integrations to create the phase plane trajectories, produce bifurcation diagram, and compute Lyapunov exponents to verify the hidden attractors. Because no unstable equilibria exist in two parameter regions, the system has a multistability and six kinds of complex dynamic behaviors. To the best of our knowledge, this feature has not been previously reported in any other high-dimensional system. Moreover, the 5D hyperchaotic system has been simulated using a specially designed electronic circuit and viewed on an oscilloscope, thereby confirming the results of the numerical integrations. Both Matlab and the oscilloscope outputs produce similar phase portraits. Such implementations in real time represent a new type of hidden attractor with important consequences for engineering applications.

Reducing and measuring fluctuations in the MST RFP: Enhancement of energy confinement and measurement of the MHD dynamo

International Nuclear Information System (INIS)

Den Hartog, D.J.; Almagri, A.F.

1996-09-01

A three- to five-fold enhancement of the energy confinement time in a reversed-field pinch (RFP) has been achieved in the Madison Symmetric Torus (MST) by reducing the amplitude of tearing mode fluctuations responsible for anomalous transport in the core of the RFP. By applying a transient poloidal inductive electric field to flatten the current density profile, the fluctuation amplitude b/B decreases from 1.5% to 0.8%, the electron temperature T e0 increases from 250 eV to 370 eV, the ohmic input power decreases from 4.5 MW to approximately 1.5 MW, the poloidal beta β 0 increases from 6% to 9%, and the energy confinement time τ E increases from 1 ms to ∼5 ms in I φ = 340 kA plasmas with density n = 1 x 10 19 m -3 . Current profile control methods are being developed for the RFP in a program to eliminate transport associated with these current-gradient-driven fluctuations. In addition to controlling the amplitude of the tearing modes, we are vigorously pursuing an understanding of the physics of these fluctuations. In particular, plasma flow, both equilibrium and fluctuating, plays a critical role in a diversity of physical phenomena in MST. The key results: 1) Edge probe measurements show that the MHD dynamo is active in low collisionality plasmas, while at high collisionality a new mechanism, the 'electron diamagnetic dynamo,' is observed. 2) Core spectroscopic measurements show that the toroidal velocity fluctuations of the plasma are coherent with the large-scale magnetic tearing modes; the scalar product of these two fluctuating quantities is similar to that expected for the MHD dynamo electromotive force. 3) Toroidal plasma flow in MST exhibits large radial shear and can be actively controlled, including unlocking locked discharges, by modifying E r with a robust biased probe. 24 refs

The Nature of Grand Minima and Maxima from Fully Nonlinear Flux Transport Dynamos

Energy Technology Data Exchange (ETDEWEB)

Inceoglu, Fadil; Arlt, Rainer [Leibniz-Institute for Astrophysics Potsdam, An der Sternwarte 16, D-14482, Potsdam (Germany); Rempel, Matthias, E-mail: finceoglu@aip.de [High Altitude Observatory, National Center for Atmospheric Research, P.O. Box 3000, Boulder, CO 80307 (United States)

2017-10-20

We aim to investigate the nature and occurrence characteristics of grand solar minimum and maximum periods, which are observed in the solar proxy records such as {sup 10}Be and {sup 14}C, using a fully nonlinear Babcock–Leighton type flux transport dynamo including momentum and entropy equations. The differential rotation and meridional circulation are generated from the effect of turbulent Reynolds stress and are subjected to back-reaction from the magnetic field. To generate grand minimum- and maximum-like periods in our simulations, we used random fluctuations in the angular momentum transport process, namely the Λ-mechanism, and in the Babcock–Leighton mechanism. To characterize the nature and occurrences of the identified grand minima and maxima in our simulations, we used the waiting time distribution analyses, which reflect whether the underlying distribution arises from a random or a memory-bearing process. The results show that, in the majority of the cases, the distributions of grand minima and maxima reveal that the nature of these events originates from memoryless processes. We also found that in our simulations the meridional circulation speed tends to be smaller during grand maximum, while it is faster during grand minimum periods. The radial differential rotation tends to be larger during grand maxima, while it is smaller during grand minima. The latitudinal differential rotation, on the other hand, is found to be larger during grand minima.

Inheritance Patterns in Citation Networks Reveal Scientific Memes

Directory of Open Access Journals (Sweden)

Tobias Kuhn

2014-11-01

Full Text Available Memes are the cultural equivalent of genes that spread across human culture by means of imitation. What makes a meme and what distinguishes it from other forms of information, however, is still poorly understood. Our analysis of memes in the scientific literature reveals that they are governed by a surprisingly simple relationship between frequency of occurrence and the degree to which they propagate along the citation graph. We propose a simple formalization of this pattern and validate it with data from close to 50 million publication records from the Web of Science, PubMed Central, and the American Physical Society. Evaluations relying on human annotators, citation network randomizations, and comparisons with several alternative approaches confirm that our formula is accurate and effective, without a dependence on linguistic or ontological knowledge and without the application of arbitrary thresholds or filters.

Inheritance Patterns in Citation Networks Reveal Scientific Memes

Science.gov (United States)

Kuhn, Tobias; Perc, Matjaž; Helbing, Dirk

2014-10-01

Memes are the cultural equivalent of genes that spread across human culture by means of imitation. What makes a meme and what distinguishes it from other forms of information, however, is still poorly understood. Our analysis of memes in the scientific literature reveals that they are governed by a surprisingly simple relationship between frequency of occurrence and the degree to which they propagate along the citation graph. We propose a simple formalization of this pattern and validate it with data from close to 50 million publication records from the Web of Science, PubMed Central, and the American Physical Society. Evaluations relying on human annotators, citation network randomizations, and comparisons with several alternative approaches confirm that our formula is accurate and effective, without a dependence on linguistic or ontological knowledge and without the application of arbitrary thresholds or filters.

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

Directory of Open Access Journals (Sweden)

Paules Richard S

2007-11-01

Full Text Available Abstract Background A common observation in the analysis of gene expression data is that many genes display similarity in their expression patterns and therefore appear to be co-regulated. However, the variation associated with microarray data and the complexity of the experimental designs make the acquisition of co-expressed genes a challenge. We developed a novel method for Extracting microarray gene expression Patterns and Identifying co-expressed Genes, designated as EPIG. The approach utilizes the underlying structure of gene expression data to extract patterns and identify co-expressed genes that are responsive to experimental conditions. Results Through evaluation of the correlations among profiles, the magnitude of variation in gene expression profiles, and profile signal-to-noise ratio's, EPIG extracts a set of patterns representing co-expressed genes. The method is shown to work well with a simulated data set and microarray data obtained from time-series studies of dauer recovery and L1 starvation in C. elegans and after ultraviolet (UV or ionizing radiation (IR-induced DNA damage in diploid human fibroblasts. With the simulated data set, EPIG extracted the appropriate number of patterns which were more stable and homogeneous than the set of patterns that were determined using the CLICK or CAST clustering algorithms. However, CLICK performed better than EPIG and CAST with respect to the average correlation between clusters/patterns of the simulated data. With real biological data, EPIG extracted more dauer-specific patterns than CLICK. Furthermore, analysis of the IR/UV data revealed 18 unique patterns and 2661 genes out of approximately 17,000 that were identified as significantly expressed and categorized to the patterns by EPIG. The time-dependent patterns displayed similar and dissimilar responses between IR and UV treatments. Gene Ontology analysis applied to each pattern-related subset of co-expressed genes revealed underlying

A Coupled 2 × 2D Babcock-Leighton Solar Dynamo Model. I. Surface Magnetic Flux Evolution

Science.gov (United States)

Lemerle, Alexandre; Charbonneau, Paul; Carignan-Dugas, Arnaud

2015-09-01

The need for reliable predictions of the solar activity cycle motivates the development of dynamo models incorporating a representation of surface processes sufficiently detailed to allow assimilation of magnetographic data. In this series of papers we present one such dynamo model, and document its behavior and properties. This first paper focuses on one of the model’s key components, namely surface magnetic flux evolution. Using a genetic algorithm, we obtain best-fit parameters of the transport model by least-squares minimization of the differences between the associated synthetic synoptic magnetogram and real magnetographic data for activity cycle 21. Our fitting procedure also returns Monte Carlo-like error estimates. We show that the range of acceptable surface meridional flow profiles is in good agreement with Doppler measurements, even though the latter are not used in the fitting process. Using a synthetic database of bipolar magnetic region (BMR) emergences reproducing the statistical properties of observed emergences, we also ascertain the sensitivity of global cycle properties, such as the strength of the dipole moment and timing of polarity reversal, to distinct realizations of BMR emergence, and on this basis argue that this stochasticity represents a primary source of uncertainty for predicting solar cycle characteristics.

A COUPLED 2 × 2D BABCOCK–LEIGHTON SOLAR DYNAMO MODEL. I. SURFACE MAGNETIC FLUX EVOLUTION

International Nuclear Information System (INIS)

Lemerle, Alexandre; Charbonneau, Paul; Carignan-Dugas, Arnaud

2015-01-01

The need for reliable predictions of the solar activity cycle motivates the development of dynamo models incorporating a representation of surface processes sufficiently detailed to allow assimilation of magnetographic data. In this series of papers we present one such dynamo model, and document its behavior and properties. This first paper focuses on one of the model’s key components, namely surface magnetic flux evolution. Using a genetic algorithm, we obtain best-fit parameters of the transport model by least-squares minimization of the differences between the associated synthetic synoptic magnetogram and real magnetographic data for activity cycle 21. Our fitting procedure also returns Monte Carlo-like error estimates. We show that the range of acceptable surface meridional flow profiles is in good agreement with Doppler measurements, even though the latter are not used in the fitting process. Using a synthetic database of bipolar magnetic region (BMR) emergences reproducing the statistical properties of observed emergences, we also ascertain the sensitivity of global cycle properties, such as the strength of the dipole moment and timing of polarity reversal, to distinct realizations of BMR emergence, and on this basis argue that this stochasticity represents a primary source of uncertainty for predicting solar cycle characteristics

A COUPLED 2 × 2D BABCOCK–LEIGHTON SOLAR DYNAMO MODEL. I. SURFACE MAGNETIC FLUX EVOLUTION

Energy Technology Data Exchange (ETDEWEB)

Lemerle, Alexandre; Charbonneau, Paul; Carignan-Dugas, Arnaud, E-mail: lemerle@astro.umontreal.ca, E-mail: paulchar@astro.umontreal.ca [Département de physique, Université de Montréal, 2900 boul. Édouard-Montpetit, Montréal, QC, H3T 1J4 (Canada)

2015-09-01

The need for reliable predictions of the solar activity cycle motivates the development of dynamo models incorporating a representation of surface processes sufficiently detailed to allow assimilation of magnetographic data. In this series of papers we present one such dynamo model, and document its behavior and properties. This first paper focuses on one of the model’s key components, namely surface magnetic flux evolution. Using a genetic algorithm, we obtain best-fit parameters of the transport model by least-squares minimization of the differences between the associated synthetic synoptic magnetogram and real magnetographic data for activity cycle 21. Our fitting procedure also returns Monte Carlo-like error estimates. We show that the range of acceptable surface meridional flow profiles is in good agreement with Doppler measurements, even though the latter are not used in the fitting process. Using a synthetic database of bipolar magnetic region (BMR) emergences reproducing the statistical properties of observed emergences, we also ascertain the sensitivity of global cycle properties, such as the strength of the dipole moment and timing of polarity reversal, to distinct realizations of BMR emergence, and on this basis argue that this stochasticity represents a primary source of uncertainty for predicting solar cycle characteristics.

Instantaneous, Simple, and Reversible Revealing of Invisible Patterns Encrypted in Robust Hollow Sphere Colloidal Photonic Crystals.

Science.gov (United States)

Zhong, Kuo; Li, Jiaqi; Liu, Liwang; Van Cleuvenbergen, Stijn; Song, Kai; Clays, Koen

2018-05-04

The colors of photonic crystals are based on their periodic crystalline structure. They show clear advantages over conventional chromophores for many applications, mainly due to their anti-photobleaching and responsiveness to stimuli. More specifically, combining colloidal photonic crystals and invisible patterns is important in steganography and watermarking for anticounterfeiting applications. Here a convenient way to imprint robust invisible patterns in colloidal crystals of hollow silica spheres is presented. While these patterns remain invisible under static environmental humidity, even up to near 100% relative humidity, they are unveiled immediately (≈100 ms) and fully reversibly by dynamic humid flow, e.g., human breath. They reveal themselves due to the extreme wettability of the patterned (etched) regions, as confirmed by contact angle measurements. The liquid surface tension threshold to induce wetting (revealing the imprinted invisible images) is evaluated by thermodynamic predictions and subsequently verified by exposure to various vapors with different surface tension. The color of the patterned regions is furthermore independently tuned by vapors with different refractive indices. Such a system can play a key role in applications such as anticounterfeiting, identification, and vapor sensing. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

DYNAMO: Distributed Leisure Yacht-Carried Sensor-Network for Atmosphere and Marine Data Crowdsourcing Applications

DEFF Research Database (Denmark)

Montella, Raffaele; Kosta, S.; Foster, I.

2018-01-01

Data crowdsourcing is a increasingly pervasive and lifestyle-changing technology, due to the flywheel effect that results from the interaction between the internet of things and cloud computing. In smart cities, for example, many initiatives harvest valuable data from citizen sensors. However, th...... weather and marine predictions via the use of data assimilation methods. We show our preliminary results about the DYNAMO Daemon, a SignalK server we embedded in the native level of the Android operating system enabling the data gathering and transfer from vessels to the cloud....

Working in Separate Silos? What Citation Patterns Reveal about Higher Education Research Internationally

Science.gov (United States)

Tight, Malcolm

2014-01-01

Higher education research is a growing, inter-disciplinary and increasingly international field of study. This article examines the citation patterns of articles published in six leading higher education journals--three published in the United States and three published elsewhere in the world--for what they reveal about the development of this…

Solar Physics at Evergreen: Solar Dynamo and Chromospheric MHD

Science.gov (United States)

Zita, E. J.; Maxwell, J.; Song, N.; Dikpati, M.

2006-12-01

We describe our five year old solar physics research program at The Evergreen State College. Famed for its cloudy skies, the Pacific Northwest is an ideal location for theoretical and remote solar physics research activities. Why does the Sun's magnetic field flip polarity every 11 years or so? How does this contribute to the magnetic storms Earth experiences when the Sun's field reverses? Why is the temperature in the Sun's upper atmosphere millions of degrees higher than the Sun's surface temperature? How do magnetic waves transport energy in the Sun’s chromosphere and the Earth’s atmosphere? How does solar variability affect climate change? Faculty and undergraduates investigate questions such as these in collaboration with the High Altitude Observatory (HAO) at the National Center for Atmospheric Research (NCAR) in Boulder. We will describe successful student research projects, logistics of remote computing, and our current physics investigations into (1) the solar dynamo and (2) chromospheric magnetohydrodynamics.

Complex evolutionary patterns revealed by mitochondrial genomes of the domestic horse.

Science.gov (United States)

Ning, T; Li, J; Lin, K; Xiao, H; Wylie, S; Hua, S; Li, H; Zhang, Y-P

2014-01-01

The domestic horse is the most widely used and important stock and recreational animal, valued for its strength and endurance. The energy required by the domestic horse is mainly supplied by mitochondria via oxidative phosphorylation. Thus, selection may have played an essential role in the evolution of the horse mitochondria. Besides, demographic events also affect the DNA polymorphic pattern on mitochondria. To understand the evolutionary patterns of the mitochondria of the domestic horse, we used a deep sequencing approach to obtain the complete sequences of 15 mitochondrial genomes, and four mitochondrial gene sequences, ND6, ATP8, ATP6 and CYTB, collected from 509, 363, 363 and 409 domestic horses, respectively. Evidence of strong substitution rate heterogeneity was found at nonsynonymous sites across the genomes. Signatures of recent positive selection on mtDNA of domestic horse were detected. Specifically, five amino acids in the four mitochondrial genes were identified as the targets of positive selection. Coalescentbased simulations imply that recent population expansion is the most probable explanation for the matrilineal population history for domestic horse. Our findings reveal a complex pattern of non-neutral evolution of the mitochondrial genome in the domestic horses.

Multivoxel Patterns Reveal Functionally Differentiated Networks Underlying Auditory Feedback Processing of Speech

DEFF Research Database (Denmark)

Zheng, Zane Z.; Vicente-Grabovetsky, Alejandro; MacDonald, Ewen N.

2013-01-01

The everyday act of speaking involves the complex processes of speech motor control. An important component of control is monitoring, detection, and processing of errors when auditory feedback does not correspond to the intended motor gesture. Here we show, using fMRI and converging operations...... within a multivoxel pattern analysis framework, that this sensorimotor process is supported by functionally differentiated brain networks. During scanning, a real-time speech-tracking system was used to deliver two acoustically different types of distorted auditory feedback or unaltered feedback while...... human participants were vocalizing monosyllabic words, and to present the same auditory stimuli while participants were passively listening. Whole-brain analysis of neural-pattern similarity revealed three functional networks that were differentially sensitive to distorted auditory feedback during...

Energetic Approach to Investigation of Chaotic Behavior of Low-Dimensional Dynamic Systems and its Illustration on a Two-Disc Rikitake Dynamo

Czech Academy of Sciences Publication Activity Database

Pánek, D.; Hrušák, J.; Doležel, Ivo

2007-01-01

Roč. 43, č. 596 (2007), s. 46-51 ISSN 0321-0499 R&D Projects: GA ČR(CZ) GA102/07/0496 Institutional research plan: CEZ:AV0Z20570509 Keywords : chaotic behavior * low-dimensional chaotic systems * Rikitake dynamo Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering

The pattern of convection in the Sun

International Nuclear Information System (INIS)

Weiss, N.O.

1976-01-01

The structure of solar magnetic fields is dominated by the effects of convection, which should be incorporated in any model of the solar cycle. Although mixing length theory is adequate for calculating the structure of main sequence stars, a better description of convection is needed for any detailed dynamo model. Recent work on nonlinear convection at low Prandt numbers is reviewed. There has been some progress towards a theory of compressible convection, though there is still no firm theoretical evidence for cells with scales less than the depth of the convecting layer. However, it remains likely that the pattern of solar convection is dominated by granules, supergranules and giant cells. The effects of rotation on these cells are briefly considered. (Auth.)

Kinematic Dynamo Action in the Presence of a Large Scale Velocity

Science.gov (United States)

Carvalho, J. C.

1990-11-01

RESUMEN. Se investiga la influencia de Un campo de velocidades de ran escala sobre la acci6n del tur bulento. Usando Un proceso de expansi6n, las soluciones se encuentran en el del movimiento lobal y de cizalla pequeflo y para randes de Reynolds. Se calcula la re jeneraci6n tica hasta un orden en el de expansi6n usando convectivas ciclotr6nicas para el campo turbulento de velocidad. ABSTRACT. The influence a scale velocity field upon the kinernatic turbulent dynamo action is . Usinj an expansion process, the solutions are found in the limit of small bulk motion and shear, and for Reynolds number. The majnetic is calculated up to second order in the expansion parameter usin cyclonic convective cells for the turbulent velocity field. Key o'td : HYDROMAGNETICS

Dynamo generation of magnetic fields in three-dimensional space: Solar cycle main flux tube formation and reversals

International Nuclear Information System (INIS)

Yoshimura, H.

1983-01-01

Dynamo processes as a magnetic field generation mechanism in astrophysics can be described essentially by movement and deformation of magnetic field lines due to plasma fluid motions. A basic element of the processes is a kinematic problem. As an important prototype of these processes, we investigate the case of the solar magnetic cycle. To follow the movement and deformation, we solve magnetohydrodynamic (MHD) equations by a numerical method with a prescribed velocity field. A simple combination of differential rotation and global convection, given by a linear analysis of fluid dynamics in a rotating sphere, can perpetually create and reverse great magnetic flux tubes encircling the Sun. We call them the main flux tubes of the solar cycle. They are progenitors of small-scale flux ropes of the solar activity. This shows that magnetic field generation by fluid motions is, in fact, possible and that MHD equations have a new type of oscillatory solution. The solar cycle can be identified with one of such oscillatory solutions. This means that we can follow detailed stages of the field generation and reversal processes of the dynamo by continuously observing the Sun. It is proposed that the magnetic flux tube formation by streaming plasma flows exemplified here could be a universal mechanism of flux tube formation in astrophysics

Non-linear quenching of current fluctuations in a self-exciting homopolar dynamo, proved by feedback system theory

OpenAIRE

A. M. de Paor

1998-01-01

International audience; Hide (Nonlinear Processes in Geophysics, 1998) has produced a new mathematical model of a self-exciting homopolar dynamo driving a series- wound motor, as a continuing contribution to the theory of the geomagnetic field. By a process of exact perturbation analysis, followed by combination and partial solution of differential equations, the complete nonlinear quenching of current fluctuations reported by Hide in the case that a parameter ? has the value 1 is proved via ...

Integración de sensores medioambientales con BIM: casos de estudio usando Arduino, Dynamo, y Revit API

OpenAIRE

Kensek, K. M.

2014-01-01

This paper investigates the feasibility of connecting environmental sensors such as light, humidity, or CO2 receptors to a building information model (BIM). A base case was created in Rhino; using Grasshopper and Firefly, a simple digital model responded to lighting-levels detected by a photoresistor on an Arduino board. The case study was duplicated using Revit Architecture, a popular BIM software, and Dynamo, a visual programming environment, in an innovative application. Another case study...

UNDERSTANDING SOLAR TORSIONAL OSCILLATIONS FROM GLOBAL DYNAMO MODELS

International Nuclear Information System (INIS)

Guerrero, G.; Smolarkiewicz, P. K.; Pino, E. M. de Gouveia Dal; Kosovichev, A. G.; Mansour, N. N.

2016-01-01

The phenomenon of solar “torsional oscillations” (TO) represents migratory zonal flows associated with the solar cycle. These flows are observed on the solar surface and, according to helioseismology, extend through the convection zone. We study the origin of the TO using results from a global MHD simulation of the solar interior that reproduces several of the observed characteristics of the mean-flows and magnetic fields. Our results indicate that the magnetic tension (MT) in the tachocline region is a key factor for the periodic changes in the angular momentum transport that causes the TO. The torque induced by the MT at the base of the convection zone is positive at the poles and negative at the equator. A rising MT torque at higher latitudes causes the poles to speed up, whereas a declining negative MT torque at the lower latitudes causes the equator to slow-down. These changes in the zonal flows propagate through the convection zone up to the surface. Additionally, our results suggest that it is the magnetic field at the tachocline that modulates the amplitude of the surface meridional flow rather than the opposite as assumed by flux-transport dynamo models of the solar cycle.

Evolution of pulsarmagnetism by virtue of a Faraday dynamo mechanism

International Nuclear Information System (INIS)

Heintzmann, H.; Novello, M.

1983-01-01

The evidence that radio-pulsars are slowed-down and Roentgen - pulsars accelerated predominantly by magnetic torques is now very strong. Angular momentum is transferred away from the neutron star to the velocity-of-light cylinder or from the Alfven - cylinder down to the neutron star by means of a magnetic spring the physical origin of which is an appropriate current flowing along the magnetic field lines. As this current must be closed at the neutron star's surface and no Hall-Field can be built-up a Faraday dynamo mechanism is set up. It is pointed out that this mechanism could switch -off a radio pulsar or turn-on a Roentgen pulsar. Many disconcerting pulsar observations could thus be explained, if radio pulsars can be reactivated in the galactic plane by means of accretion of matter in dense clouds and if Roentgenpulsars must first create a sufficiently strong magnetic field to function as a regularly pulsed emitter. (Author) [pt

Data acquisition in a high-speed rotating frame for New Mexico Institute of Mining and Technology liquid sodium αω dynamo experiment.

Science.gov (United States)

Si, Jiahe; Colgate, Stirling A; Li, Hui; Martinic, Joe; Westpfahl, David

2013-10-01

New Mexico Institute of Mining and Technology liquid sodium αω-dynamo experiment models the magnetic field generation in the universe as discussed in detail by Colgate, Li, and Pariev [Phys. Plasmas 8, 2425 (2001)]. To obtain a quasi-laminar flow with magnetic Reynolds number R(m) ~ 120, the dynamo experiment consists of two co-axial cylinders of 30.5 cm and 61 cm in diameter spinning up to 70 Hz and 17.5 Hz, respectively. During the experiment, the temperature of the cylinders must be maintained to 110 °C to ensure that the sodium remains fluid. This presents a challenge to implement a data acquisition (DAQ) system in such high temperature, high-speed rotating frame, in which the sensors (including 18 Hall sensors, 5 pressure sensors, and 5 temperature sensors, etc.) are under the centrifugal acceleration up to 376g. In addition, the data must be transmitted and stored in a computer 100 ft away for safety. The analog signals are digitized, converted to serial signals by an analog-to-digital converter and a field-programmable gate array. Power is provided through brush/ring sets. The serial signals are sent through ring/shoe sets capacitively, then reshaped with cross-talk noises removed. A microcontroller-based interface circuit is used to decode the serial signals and communicate with the data acquisition computer. The DAQ accommodates pressure up to 1000 psi, temperature up to more than 130 °C, and magnetic field up to 1000 G. First physics results have been analyzed and published. The next stage of the αω-dynamo experiment includes the DAQ system upgrade.

ESTIMATING THE DEEP SOLAR MERIDIONAL CIRCULATION USING MAGNETIC OBSERVATIONS AND A DYNAMO MODEL: A VARIATIONAL APPROACH

Energy Technology Data Exchange (ETDEWEB)

Hung, Ching Pui; Jouve, Laurène; Brun, Allan Sacha [Laboratoire AIM Paris-Saclay, CEA/IRFU Université Paris-Diderot CNRS/INSU, F-91191 Gif-Sur-Yvette (France); Fournier, Alexandre [Institut de Physique du Globe de Paris, Sorbonne Paris Cité, Université Paris Diderot UMR 7154 CNRS, F-75005 Paris (France); Talagrand, Olivier [Laboratoire de météorologie dynamique, UMR 8539, Ecole Normale Supérieure, Paris Cedex 05 (France)

2015-12-01

We show how magnetic observations of the Sun can be used in conjunction with an axisymmetric flux-transport solar dynamo model in order to estimate the large-scale meridional circulation throughout the convection zone. Our innovative approach rests on variational data assimilation, whereby the distance between predictions and observations (measured by an objective function) is iteratively minimized by means of an optimization algorithm seeking the meridional flow that best accounts for the data. The minimization is performed using a quasi-Newton technique, which requires knowledge of the sensitivity of the objective function to the meridional flow. That sensitivity is efficiently computed via the integration of the adjoint flux-transport dynamo model. Closed-loop (also known as twin) experiments using synthetic data demonstrate the validity and accuracy of this technique for a variety of meridional flow configurations, ranging from unicellular and equatorially symmetric to multicellular and equatorially asymmetric. In this well-controlled synthetic context, we perform a systematic study of the behavior of our variational approach under different observational configurations by varying their spatial density, temporal density, and noise level, as well as the width of the assimilation window. We find that the method is remarkably robust, leading in most cases to a recovery of the true meridional flow to within better than 1%. These encouraging results are a first step toward using this technique to (i) better constrain the physical processes occurring inside the Sun and (ii) better predict solar activity on decadal timescales.

ESTIMATING THE DEEP SOLAR MERIDIONAL CIRCULATION USING MAGNETIC OBSERVATIONS AND A DYNAMO MODEL: A VARIATIONAL APPROACH

International Nuclear Information System (INIS)

Hung, Ching Pui; Jouve, Laurène; Brun, Allan Sacha; Fournier, Alexandre; Talagrand, Olivier

2015-01-01

We show how magnetic observations of the Sun can be used in conjunction with an axisymmetric flux-transport solar dynamo model in order to estimate the large-scale meridional circulation throughout the convection zone. Our innovative approach rests on variational data assimilation, whereby the distance between predictions and observations (measured by an objective function) is iteratively minimized by means of an optimization algorithm seeking the meridional flow that best accounts for the data. The minimization is performed using a quasi-Newton technique, which requires knowledge of the sensitivity of the objective function to the meridional flow. That sensitivity is efficiently computed via the integration of the adjoint flux-transport dynamo model. Closed-loop (also known as twin) experiments using synthetic data demonstrate the validity and accuracy of this technique for a variety of meridional flow configurations, ranging from unicellular and equatorially symmetric to multicellular and equatorially asymmetric. In this well-controlled synthetic context, we perform a systematic study of the behavior of our variational approach under different observational configurations by varying their spatial density, temporal density, and noise level, as well as the width of the assimilation window. We find that the method is remarkably robust, leading in most cases to a recovery of the true meridional flow to within better than 1%. These encouraging results are a first step toward using this technique to (i) better constrain the physical processes occurring inside the Sun and (ii) better predict solar activity on decadal timescales

Non-linear quenching of current fluctuations in a self-exciting homopolar dynamo, proved by feedback system theory

Science.gov (United States)

de Paor, A. M.

Hide (Nonlinear Processes in Geophysics, 1998) has produced a new mathematical model of a self-exciting homopolar dynamo driving a series- wound motor, as a continuing contribution to the theory of the geomagnetic field. By a process of exact perturbation analysis, followed by combination and partial solution of differential equations, the complete nonlinear quenching of current fluctuations reported by Hide in the case that a parameter ɛ has the value 1 is proved via the Popov theorem from feedback system stability theory.

Measurements of the large-scale direct-current Earth potential and possible implications for the geomagnetic dynamo.

Science.gov (United States)

1985-07-05

The magnitude of the large-scale direct-current earth potential was measured on a section of a recently laid transatlantic telecommunications cable. Analysis of the data acquired on the 4476-kilometer cable yielded a mean direct-current potential drop of less than about 0.072 +/- 0.050 millivolts per kilometer. Interpreted in terms of a generation of the potential by the earth's geodynamo, such a small value of the mean potential implies that the toroidal and poloidal magnetic fields of the dynamo are approximately equal at the core-mantle boundary.

Emergence of Magnetic Flux Generated in a Solar Convective Dynamo. I. The Formation of Sunspots and Active Regions, and The Origin of Their Asymmetries

Energy Technology Data Exchange (ETDEWEB)

Chen, Feng; Rempel, Matthias; Fan, Yuhong, E-mail: chenfeng@ucar.edu [High Altitude Observatory, NCAR, P.O. Box 3000, Boulder, CO, 80307 (United States)

2017-09-10

We present a realistic numerical model of sunspot and active region formation based on the emergence of flux bundles generated in a solar convective dynamo. To this end, we use the magnetic and velocity fields in a horizontal layer near the top boundary of the solar convective dynamo simulation to drive realistic radiative-magnetohydrodynamic simulations of the uppermost layers of the convection zone. The main results are as follows. (1) The emerging flux bundles rise with the mean speed of convective upflows and fragment into small-scale magnetic elements that further rise to the photosphere, where bipolar sunspot pairs are formed through the coalescence of the small-scale magnetic elements. (2) Filamentary penumbral structures form when the sunspot is still growing through ongoing flux emergence. In contrast to the classical Evershed effect, the inflow seems to prevail over the outflow in a large part of the penumbra. (3) A well-formed sunspot is a mostly monolithic magnetic structure that is anchored in a persistent deep-seated downdraft lane. The flow field outside the spot shows a giant vortex ring that comprises an inflow below 15 Mm depth and an outflow above 15 Mm depth. (4) The sunspots successfully reproduce the fundamental properties of the observed solar active regions, including the more coherent leading spots with a stronger field strength, and the correct tilts of bipolar sunspot pairs. These asymmetries can be linked to the intrinsic asymmetries in the magnetic and flow fields adapted from the convective dynamo simulation.

Non-linear quenching of current fluctuations in a self-exciting homopolar dynamo, proved by feedback system theory

Directory of Open Access Journals (Sweden)

A. M. de Paor

1998-01-01

Full Text Available Hide (Nonlinear Processes in Geophysics, 1998 has produced a new mathematical model of a self-exciting homopolar dynamo driving a series- wound motor, as a continuing contribution to the theory of the geomagnetic field. By a process of exact perturbation analysis, followed by combination and partial solution of differential equations, the complete nonlinear quenching of current fluctuations reported by Hide in the case that a parameter ε has the value 1 is proved via the Popov theorem from feedback system stability theory.

Geometric Mechanics Reveals Optimal Complex Terrestrial Undulation Patterns

Science.gov (United States)

Gong, Chaohui; Astley, Henry; Schiebel, Perrin; Dai, Jin; Travers, Matthew; Goldman, Daniel; Choset, Howie; CMU Team; GT Team

Geometric mechanics offers useful tools for intuitively analyzing biological and robotic locomotion. However, utility of these tools were previously restricted to systems that have only two internal degrees of freedom and in uniform media. We show kinematics of complex locomotors that make intermittent contacts with substrates can be approximated as a linear combination of two shape bases, and can be represented using two variables. Therefore, the tools of geometric mechanics can be used to analyze motions of locomotors with many degrees of freedom. To demonstrate the proposed technique, we present studies on two different types of snake gaits which utilize combinations of waves in the horizontal and vertical planes: sidewinding (in the sidewinder rattlesnake C. cerastes) and lateral undulation (in the desert specialist snake C. occipitalis). C. cerastes moves by generating posteriorly traveling body waves in the horizontal and vertical directions, with a relative phase offset equal to +/-π/2 while C. occipitalismaintains a π/2 offset of a frequency doubled vertical wave. Geometric analysis reveals these coordination patterns enable optimal movement in the two different styles of undulatory terrestrial locomotion. More broadly, these examples demonstrate the utility of geometric mechanics in analyzing realistic biological and robotic locomotion.

STELLAR EVIDENCE THAT THE SOLAR DYNAMO MAY BE IN TRANSITION

International Nuclear Information System (INIS)

Metcalfe, Travis S.; Egeland, Ricky; Van Saders, Jennifer

2016-01-01

Precise photometry from the Kepler space telescope allows not only the measurement of rotation in solar-type field stars, but also the determination of reliable masses and ages from asteroseismology. These critical data have recently provided the first opportunity to calibrate rotation–age relations for stars older than the Sun. The evolutionary picture that emerges is surprising: beyond middle-age the efficiency of magnetic braking is dramatically reduced, implying a fundamental change in angular momentum loss beyond a critical Rossby number (Ro ∼ 2). We compile published chromospheric activity measurements for the sample of Kepler asteroseismic targets that were used to establish the new rotation–age relations. We use these data along with a sample of well-characterized solar analogs from the Mount Wilson HK survey to develop a qualitative scenario connecting the evolution of chromospheric activity to a fundamental shift in the character of differential rotation. We conclude that the Sun may be in a transitional evolutionary phase, and that its magnetic cycle might represent a special case of stellar dynamo theory.

STELLAR EVIDENCE THAT THE SOLAR DYNAMO MAY BE IN TRANSITION

Energy Technology Data Exchange (ETDEWEB)

Metcalfe, Travis S. [Space Science Institute, 4750 Walnut Street, Suite 205, Boulder CO 80301 (United States); Egeland, Ricky [High Altitude Observatory, National Center for Atmospheric Research, P.O. Box 3000, Boulder CO 80307 (United States); Van Saders, Jennifer [Carnegie Observatories, 813 Santa Barbara Street, Pasadena CA 91101 (United States)

2016-07-20

Precise photometry from the Kepler space telescope allows not only the measurement of rotation in solar-type field stars, but also the determination of reliable masses and ages from asteroseismology. These critical data have recently provided the first opportunity to calibrate rotation–age relations for stars older than the Sun. The evolutionary picture that emerges is surprising: beyond middle-age the efficiency of magnetic braking is dramatically reduced, implying a fundamental change in angular momentum loss beyond a critical Rossby number (Ro ∼ 2). We compile published chromospheric activity measurements for the sample of Kepler asteroseismic targets that were used to establish the new rotation–age relations. We use these data along with a sample of well-characterized solar analogs from the Mount Wilson HK survey to develop a qualitative scenario connecting the evolution of chromospheric activity to a fundamental shift in the character of differential rotation. We conclude that the Sun may be in a transitional evolutionary phase, and that its magnetic cycle might represent a special case of stellar dynamo theory.

Magnetorotational instability and dynamo action in gravito-turbulent astrophysical discs

Science.gov (United States)

Riols, A.; Latter, H.

2018-02-01

Though usually treated in isolation, the magnetorotational and gravitational instabilities (MRI and GI) may coincide at certain radii and evolutionary stages of protoplanetary discs and active galactic nuclei. Their mutual interactions could profoundly influence several important processes, such as accretion variability and outbursts, fragmentation and disc truncation, or large-scale magnetic field production. Direct numerical simulations of both instabilities are computationally challenging and remain relatively unexplored. In this paper, we aim to redress this neglect via a set of 3D vertically stratified shearing-box simulations, combining self-gravity and magnetic fields. We show that gravito-turbulence greatly weakens the zero-net-flux MRI. In the limit of efficient cooling (and thus enhanced GI), the MRI is completely suppressed, and yet strong magnetic fields are sustained by the gravito-turbulence. This turbulent `spiral wave' dynamo may have widespread application, especially in galactic discs. Finally, we present preliminary work showing that a strong net-vertical-flux revives the MRI and supports a magnetically dominated state in which the GI is secondary.

Long-term acoustical observations of the mesopelagic fish Maurolicus muelleri reveal novel and varied vertical migration patterns

KAUST Repository

Staby, A; Rø stad, Anders; Kaartvedt, Stein

2011-01-01

. The data revealed known patterns as normal diel vertical migration (DVM), midnight sinking between dusk and dawn, and periods without migrations, as well as novel behaviours consisting of early morning ascents, reverse diel vertical migrations

Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation

Directory of Open Access Journals (Sweden)

Hines Heather M

2012-06-01

Full Text Available Abstract Background Heliconius butterfly wing pattern diversity offers a unique opportunity to investigate how natural genetic variation can drive the evolution of complex adaptive phenotypes. Positional cloning and candidate gene studies have identified a handful of regulatory and pigmentation genes implicated in Heliconius wing pattern variation, but little is known about the greater developmental networks within which these genes interact to pattern a wing. Here we took a large-scale transcriptomic approach to identify the network of genes involved in Heliconius wing pattern development and variation. This included applying over 140 transcriptome microarrays to assay gene expression in dissected wing pattern elements across a range of developmental stages and wing pattern morphs of Heliconius erato. Results We identified a number of putative early prepattern genes with color-pattern related expression domains. We also identified 51 genes differentially expressed in association with natural color pattern variation. Of these, the previously identified color pattern “switch gene” optix was recovered as the first transcript to show color-specific differential expression. Most differentially expressed genes were transcribed late in pupal development and have roles in cuticle formation or pigment synthesis. These include previously undescribed transporter genes associated with ommochrome pigmentation. Furthermore, we observed upregulation of melanin-repressing genes such as ebony and Dat1 in non-melanic patterns. Conclusions This study identifies many new genes implicated in butterfly wing pattern development and provides a glimpse into the number and types of genes affected by variation in genes that drive color pattern evolution.

How They Move Reveals What Is Happening: Understanding the Dynamics of Big Events from Human Mobility Pattern

Directory of Open Access Journals (Sweden)

Jean Damascène Mazimpaka

2017-01-01

Full Text Available The context in which a moving object moves contributes to the movement pattern observed. Likewise, the movement pattern reflects the properties of the movement context. In particular, big events influence human mobility depending on the dynamics of the events. However, this influence has not been explored to understand big events. In this paper, we propose a methodology for learning about big events from human mobility pattern. The methodology involves extracting and analysing the stopping, approaching, and moving-away interactions between public transportation vehicles and the geographic context. The analysis is carried out at two different temporal granularity levels to discover global and local patterns. The results of evaluating this methodology on bus trajectories demonstrate that it can discover occurrences of big events from mobility patterns, roughly estimate the event start and end time, and reveal the temporal patterns of arrival and departure of event attendees. This knowledge can be usefully applied in transportation and event planning and management.

Movement patterns and dispersal potential of Pecos bluntnose shiner (Notropis simus pecosensis) revealed using otolith microchemistry

Science.gov (United States)

Chase, Nathan M.; Caldwell, Colleen A.; Carleton, Scott A.; Gould, William R.; Hobbs, James A.

2015-01-01

Natal origin and dispersal potential of the federally threatened Pecos bluntnose shiner (Notropis simus pecosensis) were successfully characterized using otolith microchemistry and swimming performance trials. Strontium isotope ratios (87Sr:86Sr) of otoliths within the resident plains killifish (Fundulus zebrinus) were successfully used as a surrogate for strontium isotope ratios in water and revealed three isotopically distinct reaches throughout 297 km of the Pecos River, New Mexico, USA. Two different life history movement patterns were revealed in Pecos bluntnose shiner. Eggs and fry were either retained in upper river reaches or passively dispersed downriver followed by upriver movement during the first year of life, with some fish achieving a minimum movement of 56 km. Swimming ability of Pecos bluntnose shiner confirmed upper critical swimming speeds (Ucrit) as high as 43.8 cm·s−1 and 20.6 body lengths·s−1 in 30 days posthatch fish. Strong swimming ability early in life supports our observations of upriver movement using otolith microchemistry and confirms movement patterns that were previously unknown for the species. Understanding patterns of dispersal of this and other small-bodied fishes using otolith microchemistry may help redirect conservation and management efforts for Great Plains fishes.

Multiple oxygen tension environments reveal diverse patterns of transcriptional regulation in primary astrocytes.

Directory of Open Access Journals (Sweden)

Wayne Chadwick

Full Text Available The central nervous system normally functions at O(2 levels which would be regarded as hypoxic by most other tissues. However, most in vitro studies of neurons and astrocytes are conducted under hyperoxic conditions without consideration of O(2-dependent cellular adaptation. We analyzed the reactivity of astrocytes to 1, 4 and 9% O(2 tensions compared to the cell culture standard of 20% O(2, to investigate their ability to sense and translate this O(2 information to transcriptional activity. Variance of ambient O(2 tension for rat astrocytes resulted in profound changes in ribosomal activity, cytoskeletal and energy-regulatory mechanisms and cytokine-related signaling. Clustering of transcriptional regulation patterns revealed four distinct response pattern groups that directionally pivoted around the 4% O(2 tension, or demonstrated coherent ascending/decreasing gene expression patterns in response to diverse oxygen tensions. Immune response and cell cycle/cancer-related signaling pathway transcriptomic subsets were significantly activated with increasing hypoxia, whilst hemostatic and cardiovascular signaling mechanisms were attenuated with increasing hypoxia. Our data indicate that variant O(2 tensions induce specific and physiologically-focused transcript regulation patterns that may underpin important physiological mechanisms that connect higher neurological activity to astrocytic function and ambient oxygen environments. These strongly defined patterns demonstrate a strong bias for physiological transcript programs to pivot around the 4% O(2 tension, while uni-modal programs that do not, appear more related to pathological actions. The functional interaction of these transcriptional 'programs' may serve to regulate the dynamic vascular responsivity of the central nervous system during periods of stress or heightened activity.

DYNAMO: a Mars upper atmosphere package for investigating solar wind interaction and escape processes, and mapping Martian fields

DEFF Research Database (Denmark)

Chassefiere, E.; Nagy, A.; Mandea, M.

2004-01-01

DYNAMO is a small multi-instrument payload aimed at characterizing current atmospheric escape, which is still poorly constrained, and improving gravity and magnetic field representations, in order to better understand the magnetic, geologic and thermal history of Mars. The internal structure...... of periapsis 170 km), and in a lesser extent 2a, offers an unprecedented opportunity to investigate by in situ probing the chemical and dynamical properties of the deep ionosphere, thermosphere, and the interaction between the atmosphere and the solar wind, and therefore the present atmospheric escape rate...

SMALL-SCALE AND GLOBAL DYNAMOS AND THE AREA AND FLUX DISTRIBUTIONS OF ACTIVE REGIONS, SUNSPOT GROUPS, AND SUNSPOTS: A MULTI-DATABASE STUDY

Energy Technology Data Exchange (ETDEWEB)

Muñoz-Jaramillo, Andrés; Windmueller, John C.; Amouzou, Ernest C.; Longcope, Dana W. [Department of Physics, Montana State University, Bozeman, MT 59717 (United States); Senkpeil, Ryan R. [Department of Physics, Purdue University, West Lafayette, IN 47907 (United States); Tlatov, Andrey G. [Kislovodsk Mountain Astronomical Station of the Pulkovo Observatory, Kislovodsk 357700 (Russian Federation); Nagovitsyn, Yury A. [Pulkovo Astronomical Observatory, Russian Academy of Sciences, St. Petersburg 196140 (Russian Federation); Pevtsov, Alexei A. [National Solar Observatory, Sunspot, NM 88349 (United States); Chapman, Gary A.; Cookson, Angela M. [San Fernando Observatory, Department of Physics and Astronomy, California State University Northridge, Northridge, CA 91330 (United States); Yeates, Anthony R. [Department of Mathematical Sciences, Durham University, South Road, Durham DH1 3LE (United Kingdom); Watson, Fraser T. [National Solar Observatory, Tucson, AZ 85719 (United States); Balmaceda, Laura A. [Institute for Astronomical, Terrestrial and Space Sciences (ICATE-CONICET), San Juan (Argentina); DeLuca, Edward E. [Harvard-Smithsonian Center for Astrophysics, Cambridge, MA 02138 (United States); Martens, Petrus C. H., E-mail: munoz@solar.physics.montana.edu [Department of Physics and Astronomy, Georgia State University, Atlanta, GA 30303 (United States)

2015-02-10

In this work, we take advantage of 11 different sunspot group, sunspot, and active region databases to characterize the area and flux distributions of photospheric magnetic structures. We find that, when taken separately, different databases are better fitted by different distributions (as has been reported previously in the literature). However, we find that all our databases can be reconciled by the simple application of a proportionality constant, and that, in reality, different databases are sampling different parts of a composite distribution. This composite distribution is made up by linear combination of Weibull and log-normal distributions—where a pure Weibull (log-normal) characterizes the distribution of structures with fluxes below (above) 10{sup 21}Mx (10{sup 22}Mx). Additionally, we demonstrate that the Weibull distribution shows the expected linear behavior of a power-law distribution (when extended to smaller fluxes), making our results compatible with the results of Parnell et al. We propose that this is evidence of two separate mechanisms giving rise to visible structures on the photosphere: one directly connected to the global component of the dynamo (and the generation of bipolar active regions), and the other with the small-scale component of the dynamo (and the fragmentation of magnetic structures due to their interaction with turbulent convection)

Patterned biofilm formation reveals a mechanism for structural heterogeneity in bacterial biofilms.

Science.gov (United States)

Gu, Huan; Hou, Shuyu; Yongyat, Chanokpon; De Tore, Suzanne; Ren, Dacheng

2013-09-03

Bacterial biofilms are ubiquitous and are the major cause of chronic infections in humans and persistent biofouling in industry. Despite the significance of bacterial biofilms, the mechanism of biofilm formation and associated drug tolerance is still not fully understood. A major challenge in biofilm research is the intrinsic heterogeneity in the biofilm structure, which leads to temporal and spatial variation in cell density and gene expression. To understand and control such structural heterogeneity, surfaces with patterned functional alkanthiols were used in this study to obtain Escherichia coli cell clusters with systematically varied cluster size and distance between clusters. The results from quantitative imaging analysis revealed an interesting phenomenon in which multicellular connections can be formed between cell clusters depending on the size of interacting clusters and the distance between them. In addition, significant differences in patterned biofilm formation were observed between wild-type E. coli RP437 and some of its isogenic mutants, indicating that certain cellular and genetic factors are involved in interactions among cell clusters. In particular, autoinducer-2-mediated quorum sensing was found to be important. Collectively, these results provide missing information that links cell-to-cell signaling and interaction among cell clusters to the structural organization of bacterial biofilms.

Network based approaches reveal clustering in protein point patterns

Science.gov (United States)

Parker, Joshua; Barr, Valarie; Aldridge, Joshua; Samelson, Lawrence E.; Losert, Wolfgang

2014-03-01

Recent advances in super-resolution imaging have allowed for the sub-diffraction measurement of the spatial location of proteins on the surfaces of T-cells. The challenge is to connect these complex point patterns to the internal processes and interactions, both protein-protein and protein-membrane. We begin analyzing these patterns by forming a geometric network amongst the proteins and looking at network measures, such the degree distribution. This allows us to compare experimentally observed patterns to models. Specifically, we find that the experimental patterns differ from heterogeneous Poisson processes, highlighting an internal clustering structure. Further work will be to compare our results to simulated protein-protein interactions to determine clustering mechanisms.

Measurement of core velocity fluctuations and the dynamo in a reversed-field pinch

International Nuclear Information System (INIS)

Den Hartog, D.J.; Craig, D.; Fiksel, G.; Fontana, P.W.; Prager, S.C.; Sarff, J.S.; Chapman, J.T.

1998-01-01

Plasma flow velocity fluctuations have been directly measured in the high temperature magnetically confined plasma in the Madison Symmetric Torus (MST) Reversed-Field Pinch (RFP). These measurements show that the flow velocity fluctuations are correlated with magnetic field fluctuations. This initial measurement is subject to limitations of spatial localization and other uncertainties, but is evidence for sustainment of the RFP magnetic field configuration by the magnetohydrodynamic (MHD) dynamo. Both the flow velocity and magnetic field fluctuations are the result of global resistive MHD modes of helicity m = 1, n = 5--10 in the core of MST. Chord-averaged flow velocity fluctuations are measured in the core of MST by recording the Doppler shift of impurity line emission with a specialized high resolution and throughput grating spectrometer. Magnetic field fluctuations are recorded with a large array of small edge pickup coils, which allows spectral decomposition into discrete modes and subsequent correlation with the velocity fluctuation data

A Network Based Methodology to Reveal Patterns in Knowledge Transfer

Directory of Open Access Journals (Sweden)

Orlando López-Cruz

2015-12-01

Full Text Available This paper motivates, presents and demonstrates in use a methodology based in complex network analysis to support research aimed at identification of sources in the process of knowledge transfer at the interorganizational level. The importance of this methodology is that it states a unified model to reveal knowledge sharing patterns and to compare results from multiple researches on data from different periods of time and different sectors of the economy. This methodology does not address the underlying statistical processes. To do this, national statistics departments (NSD provide documents and tools at their websites. But this proposal provides a guide to model information inferences gathered from data processing revealing links between sources and recipients of knowledge being transferred and that the recipient detects as main source to new knowledge creation. Some national statistics departments set as objective for these surveys the characterization of innovation dynamics in firms and to analyze the use of public support instruments. From this characterization scholars conduct different researches. Measures of dimensions of the network composed by manufacturing firms and other organizations conform the base to inquiry the structure that emerges from taking ideas from other organizations to incept innovations. These two sets of data are actors of a two- mode-network. The link between two actors (network nodes, one acting as the source of the idea. The second one acting as the destination comes from organizations or events organized by organizations that “provide” ideas to other group of firms. The resulting demonstrated design satisfies the objective of being a methodological model to identify sources in knowledge transfer of knowledge effectively used in innovation.

Large-area imaging reveals biologically driven non-random spatial patterns of corals at a remote reef

Science.gov (United States)

Edwards, Clinton B.; Eynaud, Yoan; Williams, Gareth J.; Pedersen, Nicole E.; Zgliczynski, Brian J.; Gleason, Arthur C. R.; Smith, Jennifer E.; Sandin, Stuart A.

2017-12-01

For sessile organisms such as reef-building corals, differences in the degree of dispersion of individuals across a landscape may result from important differences in life-history strategies or may reflect patterns of habitat availability. Descriptions of spatial patterns can thus be useful not only for the identification of key biological and physical mechanisms structuring an ecosystem, but also by providing the data necessary to generate and test ecological theory. Here, we used an in situ imaging technique to create large-area photomosaics of 16 plots at Palmyra Atoll, central Pacific, each covering 100 m2 of benthic habitat. We mapped the location of 44,008 coral colonies and identified each to the lowest taxonomic level possible. Using metrics of spatial dispersion, we tested for departures from spatial randomness. We also used targeted model fitting to explore candidate processes leading to differences in spatial patterns among taxa. Most taxa were clustered and the degree of clustering varied by taxon. A small number of taxa did not significantly depart from randomness and none revealed evidence of spatial uniformity. Importantly, taxa that readily fragment or tolerate stress through partial mortality were more clustered. With little exception, clustering patterns were consistent with models of fragmentation and dispersal limitation. In some taxa, dispersion was linearly related to abundance, suggesting density dependence of spatial patterning. The spatial patterns of stony corals are non-random and reflect fundamental life-history characteristics of the taxa, suggesting that the reef landscape may, in many cases, have important elements of spatial predictability.

Comparative Analysis of WUSCHEL-Related Homeobox Genes Revealed Their Parent-of-Origin and Cell Type-Specific Expression Pattern During Early Embryogenesis in Tobacco

Directory of Open Access Journals (Sweden)

Xuemei Zhou

2018-03-01

Full Text Available WUSCHEL-related homeobox (WOX gene is a plant-specific clade of homeobox transcription factors. Increasing evidences reveal that WOXs play critical roles in early embryogenesis, which involves zygote development, initiation of zygote division, and apical or basal cell lineage establishment. However, how WOXs regulate these developmental events remains largely unknown, and even detailed expression pattern in gametes and early proembryos is not yet available. Here, 13 WOX family genes were identified in Nicotiana tabacum genome. Comparative analysis of 13 WOX family genes with their homologs in Arabidopsis thaliana reveals relatively conserved expression pattern of WUS and WOX5 in shoot/root apical meristem. Whereas variations were also found, e.g., lacking homolog of WOX8 (a marker for suspensor cell in tobacco genome and the expression of WOX2/WOX9 in both apical cell and basal cell. Transient transcriptional activity analysis revealed that WOXs in WUS clade have repressive activities for their target's transcription, whereas WOXs in ancient and intermediate clade have activation activities, giving a molecular basis for the phylogenetic classification of tobacco WOXs into three major clades. Expression pattern analysis revealed that some WOXs (e.g., WOX 13a expressed in both male and female gametes and some WOXs (e.g., WOX 11 and WOX 13b displayed the characteristics of parent-of-origin genes. Interestingly, some WOXs (e.g., WOX2 and WOX9, which are essential for early embryo patterning, were de novo transcribed in zygote, indicating relevant mechanism for embryo pattern formation is only established in zygote right after fertilization and not carried in by gametes. We also found that most WOXs displayed a stage-specific and cell type-specific expression pattern. Taken together, this work provides a detailed landscape of WOXs in tobacco during fertilization and early embryogenesis, which will facilitate the understanding of their specific roles

Visual guidance of forward flight in hummingbirds reveals control based on image features instead of pattern velocity.

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Dakin, Roslyn; Fellows, Tyee K; Altshuler, Douglas L

2016-08-02

Information about self-motion and obstacles in the environment is encoded by optic flow, the movement of images on the eye. Decades of research have revealed that flying insects control speed, altitude, and trajectory by a simple strategy of maintaining or balancing the translational velocity of images on the eyes, known as pattern velocity. It has been proposed that birds may use a similar algorithm but this hypothesis has not been tested directly. We examined the influence of pattern velocity on avian flight by manipulating the motion of patterns on the walls of a tunnel traversed by Anna's hummingbirds. Contrary to prediction, we found that lateral course control is not based on regulating nasal-to-temporal pattern velocity. Instead, birds closely monitored feature height in the vertical axis, and steered away from taller features even in the absence of nasal-to-temporal pattern velocity cues. For vertical course control, we observed that birds adjusted their flight altitude in response to upward motion of the horizontal plane, which simulates vertical descent. Collectively, our results suggest that birds avoid collisions using visual cues in the vertical axis. Specifically, we propose that birds monitor the vertical extent of features in the lateral visual field to assess distances to the side, and vertical pattern velocity to avoid collisions with the ground. These distinct strategies may derive from greater need to avoid collisions in birds, compared with small insects.

Complex (Nonstandard) Six-Layer Polytypes of Lizardite Revealed from Oblique-Texture Electron Diffraction Patterns

International Nuclear Information System (INIS)

Zhukhlistov, A.P.; Zinchuk, N.N.; Kotel'nikov, D.D.

2004-01-01

Association of simple (1T and 3R) and two complex (nonstandard) orthogonal polytypes of the serpentine mineral lizardite from the Catoca kimberlite pipe (West Africa) association is revealed from oblique-texture electron diffraction patterns. A six-layer polytype with an ordered superposition of equally oriented layers (notation 3 2 3 2 3 4 3 4 3 6 3 6 or ++ - -00) belonging to the structural group A and a three-layer (336 or I,I,II) or a six-layer (336366 or I,I,II,I,II,II) polytype with alternating oppositely oriented layers and semi-disordered structure are identified using polytype analysis

A dynamo theory prediction for solar cycle 22: Sunspot number, radio flux, exospheric temperature, and total density at 400 km

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Schatten, K. H.; Hedin, A. E.

1986-01-01

Using the dynamo theory method to predict solar activity, a value for the smoothed sunspot number of 109 + or - 20 is obtained for solar cycle 22. The predicted cycle is expected to peak near December, 1990 + or - 1 year. Concommitantly, F(10.7) radio flux is expected to reach a smoothed value of 158 + or - 18 flux units. Global mean exospheric temperature is expected to reach 1060 + or - 50 K and global total average total thermospheric density at 400 km is expected to reach 4.3 x 10 to the -15th gm/cu cm + or - 25 percent.

A dynamo theory prediction for solar cycle 22 - Sunspot number, radio flux, exospheric temperature, and total density at 400 km

Science.gov (United States)

Schatten, K. H.; Hedin, A. E.

1984-01-01

Using the 'dynamo theory' method to predict solar activity, a value for the smoothed sunspot number of 109 + or - 20 is obtained for solar cycle 22. The predicted cycle is expected to peak near December, 1990 + or - 1 year. Concommitantly, F(10.7) radio flux is expected to reach a smoothed value of 158 + or - 18 flux units. Global mean exospheric temperature is expected to reach 1060 + or - 50 K and global total average total thermospheric density at 400 km is expected to reach 4.3 x 10 to the -15th gm/cu cm + or - 25 percent.

Clustering Patterns of Engagement in Massive Open Online Courses (MOOCs): The Use of Learning Analytics to Reveal Student Categories

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Khalil, Mohammad; Ebner, Martin

2017-01-01

Massive Open Online Courses (MOOCs) are remote courses that excel in their students' heterogeneity and quantity. Due to the peculiarity of being massiveness, the large datasets generated by MOOC platforms require advanced tools and techniques to reveal hidden patterns for purposes of enhancing learning and educational behaviors. This publication…

High Magnetic Shear Gain in a Liquid Sodium Stable Couette Flow Experiment: A Prelude to an α-Ω Dynamo

International Nuclear Information System (INIS)

Colgate, Stirling A.; Beckley, Howard; Si, Jiahe; Martinic, Joe; Westpfahl, David; Slutz, James; Westrom, Cebastian; Klein, Brianna; Schendel, Paul; Scharle, Cletus; McKinney, Travis; Ginanni, Rocky; Bentley, Ian; Mickey, Timothy; Ferrel, Regnar; Li, Hui; Pariev, Vladimir; Finn, John

2011-01-01

The Ω phase of the liquid sodium α-Ω dynamo experiment at New Mexico Institute of Mining and Technology in cooperation with Los Alamos National Laboratory has demonstrated a high toroidal field B φ that is ≅8xB r , where B r is the radial component of an applied poloidal magnetic field. This enhanced toroidal field is produced by the rotational shear in stable Couette flow within liquid sodium at a magnetic Reynolds number Rm≅120. Small turbulence in stable Taylor-Couette flow is caused by Ekman flow at the end walls, which causes an estimated turbulence energy fraction of (δv/v) 2 ∼10 -3 .

Trace metal depositional patterns from an open pit mining activity as revealed by archived avian gizzard contents

Energy Technology Data Exchange (ETDEWEB)

Bendell, L.I., E-mail: bendell@sfu.ca

2011-02-15

Archived samples of blue grouse (Dendragapus obscurus) gizzard contents, inclusive of grit, collected yearly between 1959 and 1970 were analyzed for cadmium, lead, zinc, and copper content. Approximately halfway through the 12-year sampling period, an open-pit copper mine began activities, then ceased operations 2 years later. Thus the archived samples provided a unique opportunity to determine if avian gizzard contents, inclusive of grit, could reveal patterns in the anthropogenic deposition of trace metals associated with mining activities. Gizzard concentrations of cadmium and copper strongly coincided with the onset of opening and the closing of the pit mining activity. Gizzard zinc and lead demonstrated significant among year variation; however, maximum concentrations did not correlate to mining activity. The archived gizzard contents did provide a useful tool for documenting trends in metal depositional patterns related to an anthropogenic activity. Further, blue grouse ingesting grit particles during the time of active mining activity would have been exposed to toxicologically significant levels of cadmium. Gizzard lead concentrations were also of toxicological significance but not related to mining activity. This type of 'pulse' toxic metal exposure as a consequence of open-pit mining activity would not necessarily have been revealed through a 'snap-shot' of soil, plant or avian tissue trace metal analysis post-mining activity. - Research Highlights: {yields} Archived gizzard samples reveals mining history. {yields} Grit ingestion exposes grouse to cadmium and lead. {yields} Grit selection includes particles enriched in cadmium. {yields} Cadmium enriched particles are of toxicological significance.

Angiogenesis interactome and time course microarray data reveal the distinct activation patterns in endothelial cells.

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Liang-Hui Chu

Full Text Available Angiogenesis involves stimulation of endothelial cells (EC by various cytokines and growth factors, but the signaling mechanisms are not completely understood. Combining dynamic gene expression time-course data for stimulated EC with protein-protein interactions associated with angiogenesis (the "angiome" could reveal how different stimuli result in different patterns of network activation and could implicate signaling intermediates as points for control or intervention. We constructed the protein-protein interaction networks of positive and negative regulation of angiogenesis comprising 367 and 245 proteins, respectively. We used five published gene expression datasets derived from in vitro assays using different types of blood endothelial cells stimulated by VEGFA (vascular endothelial growth factor A. We used the Short Time-series Expression Miner (STEM to identify significant temporal gene expression profiles. The statistically significant patterns between 2D fibronectin and 3D type I collagen substrates for telomerase-immortalized EC (TIME show that different substrates could influence the temporal gene activation patterns in the same cell line. We investigated the different activation patterns among 18 transmembrane tyrosine kinase receptors, and experimentally measured the protein level of the tyrosine-kinase receptors VEGFR1, VEGFR2 and VEGFR3 in human umbilical vein EC (HUVEC and human microvascular EC (MEC. The results show that VEGFR1-VEGFR2 levels are more closely coupled than VEGFR1-VEGFR3 or VEGFR2-VEGFR3 in HUVEC and MEC. This computational methodology can be extended to investigate other molecules or biological processes such as cell cycle.

Spectro-temporal modulation masking patterns reveal frequency selectivity.

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Oetjen, Arne; Verhey, Jesko L

2015-02-01

The present study investigated the possibility that the human auditory system demonstrates frequency selectivity to spectro-temporal amplitude modulations. Threshold modulation depth for detecting sinusoidal spectro-temporal modulations was measured using a generalized masked threshold pattern paradigm with narrowband masker modulations. Four target spectro-temporal modulations were examined, differing in their temporal and spectral modulation frequencies: a temporal modulation of -8, 8, or 16 Hz combined with a spectral modulation of 1 cycle/octave and a temporal modulation of 4 Hz combined with a spectral modulation of 0.5 cycles/octave. The temporal center frequencies of the masker modulation ranged from 0.25 to 4 times the target temporal modulation. The spectral masker-modulation center-frequencies were 0, 0.5, 1, 1.5, and 2 times the target spectral modulation. For all target modulations, the pattern of average thresholds for the eight normal-hearing listeners was consistent with the hypothesis of a spectro-temporal modulation filter. Such a pattern of modulation-frequency sensitivity was predicted on the basis of psychoacoustical data for purely temporal amplitude modulations and purely spectral amplitude modulations. An analysis of separability indicates that, for the present data set, selectivity in the spectro-temporal modulation domain can be described by a combination of a purely spectral and a purely temporal modulation filter function.

Potential for tree rings to reveal spatial patterns of past drought variability across western Australia

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O'Donnell, Alison J.; Cook, Edward R.; Palmer, Jonathan G.; Turney, Chris S. M.; Grierson, Pauline F.

2018-02-01

Proxy records have provided major insights into the variability of past climates over long timescales. However, for much of the Southern Hemisphere, the ability to identify spatial patterns of past climatic variability is constrained by the sparse distribution of proxy records. This is particularly true for mainland Australia, where relatively few proxy records are located. Here, we (1) assess the potential to use existing proxy records in the Australasian region—starting with the only two multi-century tree-ring proxies from mainland Australia—to reveal spatial patterns of past hydroclimatic variability across the western third of the continent, and (2) identify strategic locations to target for the development of new proxy records. We show that the two existing tree-ring records allow robust reconstructions of past hydroclimatic variability over spatially broad areas (i.e. > 3° × 3°) in inland north- and south-western Australia. Our results reveal synchronous periods of drought and wet conditions between the inland northern and southern regions of western Australia as well as a generally anti-phase relationship with hydroclimate in eastern Australia over the last two centuries. The inclusion of 174 tree-ring proxy records from Tasmania, New Zealand and Indonesia and a coral record from Queensland did not improve the reconstruction potential over western Australia. However, our findings suggest that the addition of relatively few new proxy records from key locations in western Australia that currently have low reconstruction skill will enable the development of a comprehensive drought atlas for the region, and provide a critical link to the drought atlases of monsoonal Asia and eastern Australia and New Zealand.

Finite-correlation-time effects in the kinematic dynamo problem

International Nuclear Information System (INIS)

Schekochihin, Alexander A.; Kulsrud, Russell M.

2001-01-01

Most of the theoretical results on the kinematic amplification of small-scale magnetic fluctuations by turbulence have been confined to the model of white-noise-like (δ-correlated in time) advecting turbulent velocity field. In this work, the statistics of the passive magnetic field in the diffusion-free regime are considered for the case when the advecting flow is finite-time correlated. A new method is developed that allows one to systematically construct the correlation-time expansion for statistical characteristics of the field such as its probability density function or the complete set of its moments. The expansion is valid provided the velocity correlation time is smaller than the characteristic growth time of the magnetic fluctuations. This expansion is carried out up to first order in the general case of a d-dimensional arbitrarily compressible advecting flow. The growth rates for all moments of the magnetic-field strength are derived. The effect of the first-order corrections due to the finite correlation time is to reduce these growth rates. It is shown that introducing a finite correlation time leads to the loss of the small-scale statistical universality, which was present in the limit of the δ-correlated velocity field. Namely, the shape of the velocity time-correlation profile and the large-scale spatial structure of the flow become important. The latter is a new effect, that implies, in particular, that the approximation of a locally-linear shear flow does not fully capture the effect of nonvanishing correlation time. Physical applications of this theory include the small-scale kinematic dynamo in the interstellar medium and protogalactic plasmas

Trace metal depositional patterns from an open pit mining activity as revealed by archived avian gizzard contents.

Science.gov (United States)

Bendell, L I

2011-02-15

Archived samples of blue grouse (Dendragapus obscurus) gizzard contents, inclusive of grit, collected yearly between 1959 and 1970 were analyzed for cadmium, lead, zinc, and copper content. Approximately halfway through the 12-year sampling period, an open-pit copper mine began activities, then ceased operations 2 years later. Thus the archived samples provided a unique opportunity to determine if avian gizzard contents, inclusive of grit, could reveal patterns in the anthropogenic deposition of trace metals associated with mining activities. Gizzard concentrations of cadmium and copper strongly coincided with the onset of opening and the closing of the pit mining activity. Gizzard zinc and lead demonstrated significant among year variation; however, maximum concentrations did not correlate to mining activity. The archived gizzard contents did provide a useful tool for documenting trends in metal depositional patterns related to an anthropogenic activity. Further, blue grouse ingesting grit particles during the time of active mining activity would have been exposed to toxicologically significant levels of cadmium. Gizzard lead concentrations were also of toxicological significance but not related to mining activity. This type of "pulse" toxic metal exposure as a consequence of open-pit mining activity would not necessarily have been revealed through a "snap-shot" of soil, plant or avian tissue trace metal analysis post-mining activity. Copyright © 2010 Elsevier B.V. All rights reserved.

A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets.

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Ritchie, Scott C; Watts, Stephen; Fearnley, Liam G; Holt, Kathryn E; Abraham, Gad; Inouye, Michael

2016-07-01

Network modules-topologically distinct groups of edges and nodes-that are preserved across datasets can reveal common features of organisms, tissues, cell types, and molecules. Many statistics to identify such modules have been developed, but testing their significance requires heuristics. Here, we demonstrate that current methods for assessing module preservation are systematically biased and produce skewed p values. We introduce NetRep, a rapid and computationally efficient method that uses a permutation approach to score module preservation without assuming data are normally distributed. NetRep produces unbiased p values and can distinguish between true and false positives during multiple hypothesis testing. We use NetRep to quantify preservation of gene coexpression modules across murine brain, liver, adipose, and muscle tissues. Complex patterns of multi-tissue preservation were revealed, including a liver-derived housekeeping module that displayed adipose- and muscle-specific association with body weight. Finally, we demonstrate the broader applicability of NetRep by quantifying preservation of bacterial networks in gut microbiota between men and women. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

Patterns of hybrid loss of imprinting reveal tissue- and cluster-specific regulation.

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Christopher D Wiley

Full Text Available Crosses between natural populations of two species of deer mice, Peromyscus maniculatus (BW, and P. polionotus (PO, produce parent-of-origin effects on growth and development. BW females mated to PO males (bwxpo produce growth-retarded but otherwise healthy offspring. In contrast, PO females mated to BW males (POxBW produce overgrown and severely defective offspring. The hybrid phenotypes are pronounced in the placenta and include POxBW conceptuses which lack embryonic structures. Evidence to date links variation in control of genomic imprinting with the hybrid defects, particularly in the POxBW offspring. Establishment of genomic imprinting is typically mediated by gametic DNA methylation at sites known as gDMRs. However, imprinted gene clusters vary in their regulation by gDMR sequences.Here we further assess imprinted gene expression and DNA methylation at different cluster types in order to discern patterns. These data reveal POxBW misexpression at the Kcnq1ot1 and Peg3 clusters, both of which lose ICR methylation in placental tissues. In contrast, some embryonic transcripts (Peg10, Kcnq1ot1 reactivated the silenced allele with little or no loss of DNA methylation. Hybrid brains also display different patterns of imprinting perturbations. Several cluster pairs thought to use analogous regulatory mechanisms are differentially affected in the hybrids.These data reinforce the hypothesis that placental and somatic gene regulation differs significantly, as does that between imprinted gene clusters and between species. That such epigenetic regulatory variation exists in recently diverged species suggests a role in reproductive isolation, and that this variation is likely to be adaptive.

Label-free proteome profiling reveals developmental-dependent patterns in young barley grains.

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Kaspar-Schoenefeld, Stephanie; Merx, Kathleen; Jozefowicz, Anna Maria; Hartmann, Anja; Seiffert, Udo; Weschke, Winfriede; Matros, Andrea; Mock, Hans-Peter

2016-06-30

Due to its importance as a cereal crop worldwide, high interest in the determination of factors influencing barley grain quality exists. This study focusses on the elucidation of protein networks affecting early grain developmental processes. NanoLC-based separation coupled to label-free MS detection was applied to gain insights into biochemical processes during five different grain developmental phases (pre-storage until storage phase, 3days to 16days after flowering). Multivariate statistics revealed two distinct developmental patterns during the analysed grain developmental phases: proteins showed either highest abundance in the middle phase of development - in the transition phase - or at later developmental stages - within the storage phase. Verification of developmental patterns observed by proteomic analysis was done by applying hypothesis-driven approaches, namely Western Blot analysis and enzyme assays. High general metabolic activity of the grain with regard to protein synthesis, cell cycle regulation, defence against oxidative stress, and energy production via photosynthesis was observed in the transition phase. Proteins upregulated in the storage phase are related towards storage protein accumulation, and interestingly to the defence of storage reserves against pathogens. A mixed regulatory pattern for most enzymes detected in our study points to regulatory mechanisms at the level of protein isoforms. In-depth understanding of early grain developmental processes of cereal caryopses is of high importance as they influence final grain weight and quality. Our knowledge about these processes is still limited, especially on proteome level. To identify key mechanisms in early barley grain development, a label-free data-independent proteomics acquisition approach has been applied. Our data clearly show, that proteins either exhibit highest expression during cellularization and the switch to the storage phase (transition phase, 5-7 DAF), or during storage

A second life for old data: Global patterns in pollution ecology revealed from published observational studies

Energy Technology Data Exchange (ETDEWEB)

Kozlov, Mikhail V., E-mail: mikoz@utu.fi [Section of Ecology, University of Turku, 20014 Turku (Finland); Zvereva, Elena L. [Section of Ecology, University of Turku, 20014 Turku (Finland)

2011-05-15

A synthesis of research on the responses of terrestrial biota (1095 effect sizes) to industrial pollution (206 point emission sources) was conducted to reveal regional and global patterns from small-scale observational studies. A meta-analysis, in combination with other statistical methods, showed that the effects of pollution depend on characteristics of the specific polluter (type, amount of emission, duration of impact on biota), the affected organism (trophic group, life history), the level at which the response was measured (organism, population, community), and the environment (biome, climate). In spite of high heterogeneity in responses, we have detected several general patterns. We suggest that the development of evolutionary adaptations to pollution is a common phenomenon and that the harmful effects of pollution on terrestrial ecosystems are likely to increase as the climate warms. We argue that community- and ecosystem-level responses to pollution should be explored directly, rather than deduced from organism-level studies. - Research synthesis demonstrated that the harmful effects of pollution on terrestrial ecosystems are likely to increase as the climate warms.

A second life for old data: Global patterns in pollution ecology revealed from published observational studies

International Nuclear Information System (INIS)

Kozlov, Mikhail V.; Zvereva, Elena L.

2011-01-01

A synthesis of research on the responses of terrestrial biota (1095 effect sizes) to industrial pollution (206 point emission sources) was conducted to reveal regional and global patterns from small-scale observational studies. A meta-analysis, in combination with other statistical methods, showed that the effects of pollution depend on characteristics of the specific polluter (type, amount of emission, duration of impact on biota), the affected organism (trophic group, life history), the level at which the response was measured (organism, population, community), and the environment (biome, climate). In spite of high heterogeneity in responses, we have detected several general patterns. We suggest that the development of evolutionary adaptations to pollution is a common phenomenon and that the harmful effects of pollution on terrestrial ecosystems are likely to increase as the climate warms. We argue that community- and ecosystem-level responses to pollution should be explored directly, rather than deduced from organism-level studies. - Research synthesis demonstrated that the harmful effects of pollution on terrestrial ecosystems are likely to increase as the climate warms.

Quantifying relief on alluvial fans using airborne lidar to reveal patterns of sediment accumulation

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Morelan, A. E., III; Oskin, M. E.

2017-12-01

We present a method of quantifying detailed surface relief on alluvial fans from high-resolution topography. Average slope and curvature of the fan are used together to empirically derive an idealized, radially symmetric fan surface, from which we compute residual topography. Maps produced using this technique highlight spatial patterns of fan deposition and avulsion. Regions of high residual topography reveal active and abandoned sediment lobes accumulated from recent depositional events, often with well-defined channels at their apex. Preliminary observations suggest that surface relief is uniform across a collection of fans in a given region and source lithology. Alluvial fans with granitic catchment lithologies in eastern California (n=12), each with varying source catchment size and mean fan slope, all show relief of around 4 meters. A collection of fans from the Carrizo Plain in central California (n=12), with source catchments set within Miocene marine and nonmarine sedimentary rocks, show significantly lower relief values around 2 meters. We hypothesize that particle grain size determines this contrasting relief through its control on the thickness of fan-building debris flows. In both settings we find that sediment lobes tend to extend toward the fan toe. This pattern supports a process, observed in analog experiments, of fan deposition dominated by back-filling and overtopping of distributary channels by debris-flows.

Planetary Magnetism

International Nuclear Information System (INIS)

Russell, C.T.

1980-01-01

Planetary spacecraft have now probed the magnetic fields of all the terrestrial planets, the moon, Jupiter, and Saturn. These measurements reveal that dynamos are active in at least four of the planets, Mercury, the earth, Jupiter, and Saturn but that Venus and Mars appear to have at most only very weak planetary magnetic fields. The moon may have once possessed an internal dynamo, for the surface rocks are magnetized. The large satellites of the outer solar system are candidates for dynamo action in addition to the large planets themselves. Of these satellites the one most likely to generate its own internal magnetic field is Io

Correlations between human mobility and social interaction reveal general activity patterns.

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Mollgaard, Anders; Lehmann, Sune; Mathiesen, Joachim

2017-01-01

A day in the life of a person involves a broad range of activities which are common across many people. Going beyond diurnal cycles, a central question is: to what extent do individuals act according to patterns shared across an entire population? Here we investigate the interplay between different activity types, namely communication, motion, and physical proximity by analyzing data collected from smartphones distributed among 638 individuals. We explore two central questions: Which underlying principles govern the formation of the activity patterns? Are the patterns specific to each individual or shared across the entire population? We find that statistics of the entire population allows us to successfully predict 71% of the activity and 85% of the inactivity involved in communication, mobility, and physical proximity. Surprisingly, individual level statistics only result in marginally better predictions, indicating that a majority of activity patterns are shared across our sample population. Finally, we predict short-term activity patterns using a generalized linear model, which suggests that a simple linear description might be sufficient to explain a wide range of actions, whether they be of social or of physical character.

Evolution of Precipitation Structure During the November DYNAMO MJO Event: Cloud-Resolving Model Intercomparison and Cross Validation Using Radar Observations

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Li, Xiaowen; Janiga, Matthew A.; Wang, Shuguang; Tao, Wei-Kuo; Rowe, Angela; Xu, Weixin; Liu, Chuntao; Matsui, Toshihisa; Zhang, Chidong

2018-04-01

Evolution of precipitation structures are simulated and compared with radar observations for the November Madden-Julian Oscillation (MJO) event during the DYNAmics of the MJO (DYNAMO) field campaign. Three ground-based, ship-borne, and spaceborne precipitation radars and three cloud-resolving models (CRMs) driven by observed large-scale forcing are used to study precipitation structures at different locations over the central equatorial Indian Ocean. Convective strength is represented by 0-dBZ echo-top heights, and convective organization by contiguous 17-dBZ areas. The multi-radar and multi-model framework allows for more stringent model validations. The emphasis is on testing models' ability to simulate subtle differences observed at different radar sites when the MJO event passed through. The results show that CRMs forced by site-specific large-scale forcing can reproduce not only common features in cloud populations but also subtle variations observed by different radars. The comparisons also revealed common deficiencies in CRM simulations where they underestimate radar echo-top heights for the strongest convection within large, organized precipitation features. Cross validations with multiple radars and models also enable quantitative comparisons in CRM sensitivity studies using different large-scale forcing, microphysical schemes and parameters, resolutions, and domain sizes. In terms of radar echo-top height temporal variations, many model sensitivity tests have better correlations than radar/model comparisons, indicating robustness in model performance on this aspect. It is further shown that well-validated model simulations could be used to constrain uncertainties in observed echo-top heights when the low-resolution surveillance scanning strategy is used.

Sudden transitions and grand variations in the solar dynamo, past and future☆

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De Jager Cornelis

2012-06-01

Full Text Available The solar dynamo is the exotic dance of the sun’s two major magnetic field components, the poloidal and the toroidal, interacting in anti-phase. On the basis of new data on the geomagnetic aa index, we improve our previous forecast of the properties of the current Schwabe cycle #24. Its maximum will occur in 2013.5 and the maximum sunspot number Rmax will then be 62 ± 12, which is within the bounds of our earlier forecasts. The subsequent analysis, based on a phase diagram, which is a diagram showing the relation between maximum sunspot numbers and minimum geomagnetic aa index values leads to the conclusion that a new Grand Episode in solar activity has started in 2008. From the study of the natural oscillations in the sunspot number time series, as found by an analysis based on suitable wavelet base functions, we predict that this Grand Episode will be of the Regular Oscillations type, which is the kind of oscillations that also occurred between 1724 and 1924. Previous expectations of a Grand (Maunder-type Minimum of solar activity cannot be supported. We stress the significance of the Hallstatt periodicity for determining the character of the forthcoming Grand Episodes. No Grand Minimum is expected to occur during the millennium that has just started.

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea.

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Parsons, Rachel J; Breitbart, Mya; Lomas, Michael W; Carlson, Craig A

2012-02-01

There are an estimated 10(30) virioplankton in the world oceans, the majority of which are phages (viruses that infect bacteria). Marine phages encompass enormous genetic diversity, affect biogeochemical cycling of elements, and partially control aspects of prokaryotic production and diversity. Despite their importance, there is a paucity of data describing virioplankton distributions over time and depth in oceanic systems. A decade of high-resolution time-series data collected from the upper 300 m in the northwestern Sargasso Sea revealed recurring temporal and vertical patterns of virioplankton abundance in unprecedented detail. An annual virioplankton maximum developed between 60 and 100 m during periods of summer stratification and eroded during winter convective mixing. The timing and vertical positioning of this seasonal pattern was related to variability in water column stability and the dynamics of specific picophytoplankton and heterotrophic bacterioplankton lineages. Between 60 and 100 m, virioplankton abundance was negatively correlated to the dominant heterotrophic bacterioplankton lineage SAR11, as well as the less abundant picophytoplankton, Synechococcus. In contrast, virioplankton abundance was positively correlated to the dominant picophytoplankton lineage Prochlorococcus, and the less abundant alpha-proteobacteria, Rhodobacteraceae. Seasonally, virioplankton abundances were highly synchronous with Prochlorococcus distributions and the virioplankton to Prochlorococcus ratio remained remarkably constant during periods of water column stratification. The data suggest that a significant fraction of viruses in the mid-euphotic zone of the subtropical gyres may be cyanophages and patterns in their abundance are largely determined by Prochlorococcus dynamics in response to water column stability. This high-resolution, decadal survey of virioplankton abundance provides insight into the possible controls of virioplankton dynamics in the open ocean.

CO I barcoding reveals new clades and radiation patterns of Indo-Pacific sponges of the family Irciniidae (Demospongiae: Dictyoceratida.

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Judith Pöppe

2010-04-01

Full Text Available DNA barcoding is a promising tool to facilitate a rapid and unambiguous identification of sponge species. Demosponges of the order Dictyoceratida are particularly challenging to identify, but are of ecological as well as biochemical importance.Here we apply DNA barcoding with the standard CO1-barcoding marker on selected Indo-Pacific specimens of two genera, Ircinia and Psammocinia of the family Irciniidae. We show that the CO1 marker identifies several species new to science, reveals separate radiation patterns of deep-sea Ircinia sponges and indicates dispersal patterns of Psammocinia species. However, some species cannot be unambiguously barcoded by solely this marker due to low evolutionary rates.We support previous suggestions for a combination of the standard CO1 fragment with an additional fragment for sponge DNA barcoding.

Statistical Mechanics of Turbulent Dynamos

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Shebalin, John V.

2014-01-01

Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much

Descriptive parameters for revealing substitution patterns of sugar beet pectins using pectolytic enzymes.

Science.gov (United States)

Remoroza, C; Buchholt, H C; Gruppen, H; Schols, H A

2014-01-30

Enzymatic fingerprinting was applied to sugar beet pectins (SBPs) modified by either plant or fungal pectin methyl esterases and alkali catalyzed de-esterification to reveal the ester distributions over the pectin backbone. A simultaneous pectin lyase (PL) treatment to the commonly used endo-polygalacturonase (endo-PG) degradation showed to be effective in degrading both high and low methylesterified and/or acetylated homogalaturonan regions of SBP simultaneously. Using LC-HILIC-MS/ELSD, we studied in detail all the diagnostic oligomers present, enabling us to discriminate between differently prepared sugar beet pectins having various levels of methylesterification and acetylation. Furthermore, distinction between commercially extracted and de-esterified sugar beet pectin having different patterns of substitution was achieved by using novel descriptive pectin parameters. In addition to DBabs approach for nonmethylesterified sequences degradable by endo-PG, the "degree of hydrolysis" (DHPG) representing all partially saturated methylesterified and/or acetylated galacturonic acid (GalA) moieties was introduced as a new parameter. Consequently, the description DHPL has been introduced to quantify all esterified unsaturated GalA oligomers. Copyright © 2013 Elsevier Ltd. All rights reserved.

A small-scale dynamo in feedback-dominated galaxies - III. Cosmological simulations

Science.gov (United States)

Rieder, Michael; Teyssier, Romain

2017-12-01

Magnetic fields are widely observed in the Universe in virtually all astrophysical objects, from individual stars to entire galaxies, even in the intergalactic medium, but their specific genesis has long been debated. Due to the development of more realistic models of galaxy formation, viable scenarios are emerging to explain cosmic magnetism, thanks to both deeper observations and more efficient and accurate computer simulations. We present here a new cosmological high-resolution zoom-in magnetohydrodynamic (MHD) simulation, using the adaptive mesh refinement technique, of a dwarf galaxy with an initially weak and uniform magnetic seed field that is amplified by a small-scale dynamo (SSD) driven by supernova-induced turbulence. As first structures form from the gravitational collapse of small density fluctuations, the frozen-in magnetic field separates from the cosmic expansion and grows through compression. In a second step, star formation sets in and establishes a strong galactic fountain, self-regulated by supernova explosions. Inside the galaxy, the interstellar medium becomes highly turbulent, dominated by strong supersonic shocks, as demonstrated by the spectral analysis of the gas kinetic energy. In this turbulent environment, the magnetic field is quickly amplified via a SSD process and is finally carried out into the circumgalactic medium by a galactic wind. This realistic cosmological simulation explains how initially weak magnetic seed fields can be amplified quickly in early, feedback-dominated galaxies, and predicts, as a consequence of the SSD process, that high-redshift magnetic fields are likely to be dominated by their small-scale components.

Patterns of Storage, Synthesis and Changing Light Levels Revealed by Carbon Isotope Microsampling within Eocene Metasequoia Tree Rings

Science.gov (United States)

Jahren, H.; Sternberg, L.

2005-12-01

Fossil tree rings from Axel Heiberg Island were microanalyzed for δ13C value in order to assess patterns of tree growth and carbon storage within the Middle Eocene (~45 Ma) Arctic paleoenvironment. Wood from four Metasequoia-type individuals was subsampled for analysis: each individual fossil consisted of between 4 and 10 large (~1 cm thick) consecutive tree rings. One of the fossils displayed an obvious concentric pattern, allowing for the determination of the direction of growth with isotopic pattern. Each ring was divided into ~1 mm thick subsamples, resulting in 5-10 δ13C value determinations per period of ring growth (i.e., growing season). All rings revealed a distinct pattern that was characteristic across growing seasons and across individual fossils. Early in the season, δ13C was at its highest value but descended systematically and sharply to its lowest value at the end of the growing season. Total decrease ranged between 3 and 5 ‰ over the course of each growing season. Identical patterns were observed in the δ13C value of alpha-cellulose isolated from each subsample, indicating that the trends observed did not represent changing levels of secondary metabolites, but rather a seasonal adjustment in the bulk source of carbon used during biosynthesis. Our results are consistent with the following annual pattern of wood synthesis 1.) complete dependence on the mobilization of stored carbon compounds early in the growing season; 2.) systematically increasing use of actively-acquired photosynthate during the growing season; 3.) complete reliance on active photosynthate by the end of the growing season. An additional and significant source of 13C discrimination is declining light levels late in the growing season, and likely contributes to the extreme pattern of δ13C decrease seen across each ring. Our results mimic those seen from modern broadleaf deciduous trees (Helle & Schlesser 2004), but differ from those seen in modern conifers (Barbour et al 2002

Dynamos in asymptotic-giant-branch stars as the origin of magnetic fields shaping planetary nebulae.

Science.gov (United States)

Blackman, E G; Frank, A; Markiel, J A; Thomas, J H; Van Horn, H M

2001-01-25

Planetary nebulae are thought to be formed when a slow wind from the progenitor giant star is overtaken by a subsequent fast wind generated as the star enters its white dwarf stage. A shock forms near the boundary between the winds, creating the relatively dense shell characteristic of a planetary nebula. A spherically symmetric wind will produce a spherically symmetric shell, yet over half of known planetary nebulae are not spherical; rather, they are elliptical or bipolar in shape. A magnetic field could launch and collimate a bipolar outflow, but the origin of such a field has hitherto been unclear, and some previous work has even suggested that a field could not be generated. Here we show that an asymptotic-giant-branch (AGB) star can indeed generate a strong magnetic field, having as its origin a dynamo at the interface between the rapidly rotating core and the more slowly rotating envelope of the star. The fields are strong enough to shape the bipolar outflows that produce the observed bipolar planetary nebulae. Magnetic braking of the stellar core during this process may also explain the puzzlingly slow rotation of most white dwarf stars.

Comparison of Large eddy dynamo simulation using dynamic sub-grid scale (SGS) model with a fully resolved direct simulation in a rotating spherical shell

Science.gov (United States)

Matsui, H.; Buffett, B. A.

2017-12-01

The flow in the Earth's outer core is expected to have vast length scale from the geometry of the outer core to the thickness of the boundary layer. Because of the limitation of the spatial resolution in the numerical simulations, sub-grid scale (SGS) modeling is required to model the effects of the unresolved field on the large-scale fields. We model the effects of sub-grid scale flow and magnetic field using a dynamic scale similarity model. Four terms are introduced for the momentum flux, heat flux, Lorentz force and magnetic induction. The model was previously used in the convection-driven dynamo in a rotating plane layer and spherical shell using the Finite Element Methods. In the present study, we perform large eddy simulations (LES) using the dynamic scale similarity model. The scale similarity model is implement in Calypso, which is a numerical dynamo model using spherical harmonics expansion. To obtain the SGS terms, the spatial filtering in the horizontal directions is done by taking the convolution of a Gaussian filter expressed in terms of a spherical harmonic expansion, following Jekeli (1981). A Gaussian field is also applied in the radial direction. To verify the present model, we perform a fully resolved direct numerical simulation (DNS) with the truncation of the spherical harmonics L = 255 as a reference. And, we perform unresolved DNS and LES with SGS model on coarser resolution (L= 127, 84, and 63) using the same control parameter as the resolved DNS. We will discuss the verification results by comparison among these simulations and role of small scale fields to large scale fields through the role of the SGS terms in LES.

Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority

KAUST Repository

Pearman, John K.

2018-05-18

Coral reefs harbor diverse assemblages of organisms yet the majority of this diversity is hidden within the three dimensional structure of the reef and neglected using standard visual surveys. This study uses Autonomous Reef Monitoring Structures (ARMS) and amplicon sequencing methodologies, targeting mitochondrial cytochrome oxidase I and 18S rRNA genes, to investigate changes in the cryptic reef biodiversity. ARMS, deployed at 11 sites across a near- to off-shore gradient in the Red Sea were dominated by Porifera (sessile fraction), Arthropoda and Annelida (mobile fractions). The two primer sets detected different taxa lists, but patterns in community composition and structure were similar. While the microhabitat of the ARMS deployment affected the community structure, a clear cross-shelf gradient was observed for all fractions investigated. The partitioning of beta-diversity revealed that replacement (i.e. the substitution of species) made the highest contribution with richness playing a smaller role. Hence, different reef habitats across the shelf are relevant to regional diversity, as they harbor different communities, a result with clear implications for the design of Marine Protected Areas. ARMS can be vital tools to assess biodiversity patterns in the generally neglected but species-rich cryptic benthos, providing invaluable information for the management and conservation of hard-bottomed habitats over local and global scales.

A global analysis of bird plumage patterns reveals no association between habitat and camouflage

Directory of Open Access Journals (Sweden)

Marius Somveille

2016-11-01

Full Text Available Evidence suggests that animal patterns (motifs function in camouflage. Irregular mottled patterns can facilitate concealment when stationary in cluttered habitats, whereas regular patterns typically prevent capture during movement in open habitats. Bird plumage patterns have predominantly converged on just four types—mottled (irregular, scales, bars and spots (regular—and habitat could be driving convergent evolution in avian patterning. Based on sensory ecology, we therefore predict that irregular patterns would be associated with visually noisy closed habitats and that regular patterns would be associated with open habitats. Regular patterns have also been shown to function in communication for sexually competing males to stand-out and attract females, so we predict that male breeding plumage patterns evolved in both open and closed habitats. Here, taking phylogenetic relatedness into account, we investigate ecological selection for bird plumage patterns across the class Aves. We surveyed plumage patterns in 80% of all avian species worldwide. Of these, 2,756 bird species have regular and irregular plumage patterns as well as habitat information. In this subset, we tested whether adult breeding/non-breeding plumages in each sex, and juvenile plumages, were associated with the habitat types found within the species’ geographical distributions. We found no evidence for an association between habitat and plumage patterns across the world’s birds and little phylogenetic signal. We also found that species with regular and irregular plumage patterns were distributed randomly across the world’s eco-regions without being affected by habitat type. These results indicate that at the global spatial and taxonomic scale, habitat does not predict convergent evolution in bird plumage patterns, contrary to the camouflage hypothesis.

A global analysis of bird plumage patterns reveals no association between habitat and camouflage.

Science.gov (United States)

Somveille, Marius; Marshall, Kate L A; Gluckman, Thanh-Lan

2016-01-01

Evidence suggests that animal patterns (motifs) function in camouflage. Irregular mottled patterns can facilitate concealment when stationary in cluttered habitats, whereas regular patterns typically prevent capture during movement in open habitats. Bird plumage patterns have predominantly converged on just four types-mottled (irregular), scales, bars and spots (regular)-and habitat could be driving convergent evolution in avian patterning. Based on sensory ecology, we therefore predict that irregular patterns would be associated with visually noisy closed habitats and that regular patterns would be associated with open habitats. Regular patterns have also been shown to function in communication for sexually competing males to stand-out and attract females, so we predict that male breeding plumage patterns evolved in both open and closed habitats. Here, taking phylogenetic relatedness into account, we investigate ecological selection for bird plumage patterns across the class Aves. We surveyed plumage patterns in 80% of all avian species worldwide. Of these, 2,756 bird species have regular and irregular plumage patterns as well as habitat information. In this subset, we tested whether adult breeding/non-breeding plumages in each sex, and juvenile plumages, were associated with the habitat types found within the species' geographical distributions. We found no evidence for an association between habitat and plumage patterns across the world's birds and little phylogenetic signal. We also found that species with regular and irregular plumage patterns were distributed randomly across the world's eco-regions without being affected by habitat type. These results indicate that at the global spatial and taxonomic scale, habitat does not predict convergent evolution in bird plumage patterns, contrary to the camouflage hypothesis.

Activity patterns of free-ranging koalas (Phascolarctos cinereus revealed by accelerometry.

Directory of Open Access Journals (Sweden)

Michelle A Ryan

Full Text Available An understanding of koala activity patterns is important for measuring the behavioral response of this species to environmental change, but to date has been limited by the logistical challenges of traditional field methodologies. We addressed this knowledge gap by using tri-axial accelerometer data loggers attached to VHF radio collars to examine activity patterns of adult male and female koalas in a high-density population at Cape Otway, Victoria, Australia. Data were obtained from 27 adult koalas over two 7-d periods during the breeding season: 12 in the early-breeding season in November 2010, and 15 in the late-breeding season in January 2011. Multiple 15 minute observation blocks on each animal were used for validation of activity patterns determined from the accelerometer data loggers. Accelerometry was effective in distinguishing between inactive (sleeping, resting and active (grooming, feeding and moving behaviors. Koalas were more active during the early-breeding season with a higher index of movement (overall dynamic body acceleration [ODBA] for both males and females. Koalas showed a distinct temporal pattern of behavior, with most activity occurring from mid-afternoon to early morning. Accelerometry has potential for examining fine-scale behavior of a wide range of arboreal and terrestrial species.

Activity patterns of free-ranging koalas (Phascolarctos cinereus) revealed by accelerometry.

Science.gov (United States)

Ryan, Michelle A; Whisson, Desley A; Holland, Greg J; Arnould, John P Y

2013-01-01

An understanding of koala activity patterns is important for measuring the behavioral response of this species to environmental change, but to date has been limited by the logistical challenges of traditional field methodologies. We addressed this knowledge gap by using tri-axial accelerometer data loggers attached to VHF radio collars to examine activity patterns of adult male and female koalas in a high-density population at Cape Otway, Victoria, Australia. Data were obtained from 27 adult koalas over two 7-d periods during the breeding season: 12 in the early-breeding season in November 2010, and 15 in the late-breeding season in January 2011. Multiple 15 minute observation blocks on each animal were used for validation of activity patterns determined from the accelerometer data loggers. Accelerometry was effective in distinguishing between inactive (sleeping, resting) and active (grooming, feeding and moving) behaviors. Koalas were more active during the early-breeding season with a higher index of movement (overall dynamic body acceleration [ODBA]) for both males and females. Koalas showed a distinct temporal pattern of behavior, with most activity occurring from mid-afternoon to early morning. Accelerometry has potential for examining fine-scale behavior of a wide range of arboreal and terrestrial species.

Comparative Phylogeography Reveals Cryptic Diversity and Repeated Patterns of Cladogenesis for Amphibians and Reptiles in Northwestern Ecuador.

Science.gov (United States)

Arteaga, Alejandro; Pyron, R Alexander; Peñafiel, Nicolás; Romero-Barreto, Paulina; Culebras, Jaime; Bustamante, Lucas; Yánez-Muñoz, Mario H; Guayasamin, Juan M

2016-01-01

Comparative phylogeography allow us to understand how shared historical circumstances have shaped the formation of lineages, by examining a broad spectrum of co-distributed populations of different taxa. However, these types of studies are scarce in the Neotropics, a region that is characterized by high diversity, complex geology, and poorly understood biogeography. Here, we investigate the diversification patterns of five lineages of amphibians and reptiles, co-distributed across the Choco and Andes ecoregions in northwestern Ecuador. Mitochondrial DNA and occurrence records were used to determine the degree of geographic genetic divergence within species. Our results highlight congruent patterns of parapatric speciation and common geographical barriers for distantly related taxa. These comparisons indicate similar biological and demographic characteristics for the included clades, and reveal the existence of two new species of Pristimantis previously subsumed under P. walkeri, which we describe herein. Our data supports the hypothesis that widely distributed Chocoan taxa may generally experience their greatest opportunities for isolation and parapatric speciation across thermal elevational gradients. Finally, our study provides critical information to predict which unstudied lineages may harbor cryptic diversity, and how geology and climate are likely to have shaped their evolutionary history.

Comparative Phylogeography Reveals Cryptic Diversity and Repeated Patterns of Cladogenesis for Amphibians and Reptiles in Northwestern Ecuador

Science.gov (United States)

Pyron, R. Alexander; Peñafiel, Nicolás; Romero-Barreto, Paulina; Culebras, Jaime; Bustamante, Lucas; Yánez-Muñoz, Mario H.; Guayasamin, Juan M.

2016-01-01

Comparative phylogeography allow us to understand how shared historical circumstances have shaped the formation of lineages, by examining a broad spectrum of co-distributed populations of different taxa. However, these types of studies are scarce in the Neotropics, a region that is characterized by high diversity, complex geology, and poorly understood biogeography. Here, we investigate the diversification patterns of five lineages of amphibians and reptiles, co-distributed across the Choco and Andes ecoregions in northwestern Ecuador. Mitochondrial DNA and occurrence records were used to determine the degree of geographic genetic divergence within species. Our results highlight congruent patterns of parapatric speciation and common geographical barriers for distantly related taxa. These comparisons indicate similar biological and demographic characteristics for the included clades, and reveal the existence of two new species of Pristimantis previously subsumed under P. walkeri, which we describe herein. Our data supports the hypothesis that widely distributed Chocoan taxa may generally experience their greatest opportunities for isolation and parapatric speciation across thermal elevational gradients. Finally, our study provides critical information to predict which unstudied lineages may harbor cryptic diversity, and how geology and climate are likely to have shaped their evolutionary history. PMID:27120100

The Slow:Fast substitution ratio reveals changing patterns of natural selection in gamma-proteobacterial genomes

Energy Technology Data Exchange (ETDEWEB)

Alm, Eric; Shapiro, B. Jesse

2009-04-15

Different microbial species are thought to occupy distinct ecological niches, subjecting each species to unique selective constraints, which may leave a recognizable signal in their genomes. Thus, it may be possible to extract insight into the genetic basis of ecological differences among lineages by identifying unusual patterns of substitutions in orthologous gene or protein sequences. We use the ratio of substitutions in slow versus fast-evolving sites (nucleotides in DNA, or amino acids in protein sequence) to quantify deviations from the typical pattern of selective constraint observed across bacterial lineages. We propose that elevated S:F in one branch (an excess of slow-site substitutions) can indicate a functionally-relevant change, due to either positive selection or relaxed evolutionary constraint. In a genome-wide comparative study of gamma-proteobacterial proteins, we find that cell-surface proteins involved with motility and secretion functions often have high S:F ratios, while information-processing genes do not. Change in evolutionary constraints in some species is evidenced by increased S:F ratios within functionally-related sets of genes (e.g., energy production in Pseudomonas fluorescens), while other species apparently evolve mostly by drift (e.g., uniformly elevated S:F across most genes in Buchnera spp.). Overall, S:F reveals several species-specific, protein-level changes with potential functional/ecological importance. As microbial genome projects yield more species-rich gene-trees, the S:F ratio will become an increasingly powerful tool for uncovering functional genetic differences among species.

Abnormal patterns of cerebral lateralisation as revealed by the Universal Chimeric Faces Task in individuals with autistic disorder.

Science.gov (United States)

Taylor, Sandie; Workman, Lance; Yeomans, Heather

2012-01-01

A previous study by Workman, Chilvers, Yeomans, and Taylor (2006), using the "Universal" Chimeric Faces Task (UCFT) for six emotional expressions, demonstrated that an overall left hemispatial/right hemisphere (RH) advantage has begun to develop by the age of 7-8. Moreover, the development of this left hemispatial advantage was observed to correlate positively with the ability to read emotions in the faces of others. Adopting the UCFT, the current study compared autistic children (11-15) with unimpaired children of two age groups (5-6 and 7-8) from this previous study. The autistic children showed a left hemispatial/RH advantage only for the two emotional expressions of "happiness" and "anger". Results for the autistic children revealed a similar overall pattern of lateralisation to the 5-6-year-olds and one that is less lateralised than the pattern for the 7-8-year-olds. Autistic children appear to show a developmental deficit for left hemispatial/RH advantage for emotional expression with the exception of "happiness" and "anger." The findings are discussed in terms of role hemisphericity and an approach-avoidance model.

Functional redundancy patterns reveal non-random assembly rules in a species-rich marine assemblage.

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Nicolas Guillemot

Full Text Available The relationship between species and the functional diversity of assemblages is fundamental in ecology because it contains key information on functional redundancy, and functionally redundant ecosystems are thought to be more resilient, resistant and stable. However, this relationship is poorly understood and undocumented for species-rich coastal marine ecosystems. Here, we used underwater visual censuses to examine the patterns of functional redundancy for one of the most diverse vertebrate assemblages, the coral reef fishes of New Caledonia, South Pacific. First, we found that the relationship between functional and species diversity displayed a non-asymptotic power-shaped curve, implying that rare functions and species mainly occur in highly diverse assemblages. Second, we showed that the distribution of species amongst possible functions was significantly different from a random distribution up to a threshold of ∼90 species/transect. Redundancy patterns for each function further revealed that some functions displayed fast rates of increase in redundancy at low species diversity, whereas others were only becoming redundant past a certain threshold. This suggested non-random assembly rules and the existence of some primordial functions that would need to be fulfilled in priority so that coral reef fish assemblages can gain a basic ecological structure. Last, we found little effect of habitat on the shape of the functional-species diversity relationship and on the redundancy of functions, although habitat is known to largely determine assemblage characteristics such as species composition, biomass, and abundance. Our study shows that low functional redundancy is characteristic of this highly diverse fish assemblage, and, therefore, that even species-rich ecosystems such as coral reefs may be vulnerable to the removal of a few keystone species.

Diurnal Cycle of ITCZ Convection during the MJO Suppressed Phase in DYNAMO

Science.gov (United States)

Ciesielski, P. E.; Johnson, R. H.; Schubert, W. H.

2017-12-01

During the special observing period of the Dynamics of the MJO (DYNAMO) experiment, conducted over the Indian Ocean from 1 October to 30 November 2011, two sounding arrays - one north and one south of the equator, referred to here as the NSA and SSA, respectively - took 4-8 soundings/day. We augment this 3-h dataset with observations of radiation and rainfall to investigate the diurnal cycle of convection during the suppressed phase of the October MJO. During this 14-day period when convection was suppressed over the NSA but prominent over the SSA, the circulation over the sounding arrays could be characterized as a local Hadley cell embedded within a monsoonal flow. Strong rising motion was present within the ITCZ and compensating subsidence over the NSA. A prominent diurnal pulsing of this cell was observed, impacting conditions on both sides of the equator, with the cell running strongest in the early morning hours (05-08 LT) and notably weakening later in the day (17-20LT). The reduction in evening subsidence over the NSA may have assisted the moistening of the low to mid-troposphere there during the pre-onset stage of the MJO. Apparent heating Q1 within the ITCZ exhibits a diurnal evolution from early morning bottom-heavy profiles to weaker daytime top-heavy profiles. Making use of the weak temperature gradient approximation, results suggest that direct radiative effects played a dominant role in controlling diurnal variations of vertical motion and convection within the ITCZ while non-radiative processes were more prominent over the NSA.

Correlations between human mobility and social interaction reveal general activity patterns

DEFF Research Database (Denmark)

Mollgaard, Anders; Jørgensen, Sune Lehmann; Mathiesen, Joachim

2017-01-01

activity types, namely communication, motion, and physical proximity by analyzing data collected from smartphones distributed among 638 individuals. We explore two central questions: Which underlying principles govern the formation of the activity patterns? Are the patterns specific to each individual...... or shared across the entire population? We find that statistics of the entire population allows us to successfully predict 71% of the activity and 85% of the inactivity involved in communication, mobility, and physical proximity. Surprisingly, individual level statistics only result in marginally better...... they be of social or of physical character....

Proteomic Analysis of Lysine Acetylation Sites in Rat Tissues Reveals Organ Specificity and Subcellular Patterns

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Alicia Lundby

2012-08-01

Full Text Available Lysine acetylation is a major posttranslational modification involved in a broad array of physiological functions. Here, we provide an organ-wide map of lysine acetylation sites from 16 rat tissues analyzed by high-resolution tandem mass spectrometry. We quantify 15,474 modification sites on 4,541 proteins and provide the data set as a web-based database. We demonstrate that lysine acetylation displays site-specific sequence motifs that diverge between cellular compartments, with a significant fraction of nuclear sites conforming to the consensus motifs G-AcK and AcK-P. Our data set reveals that the subcellular acetylation distribution is tissue-type dependent and that acetylation targets tissue-specific pathways involved in fundamental physiological processes. We compare lysine acetylation patterns for rat as well as human skeletal muscle biopsies and demonstrate its general involvement in muscle contraction. Furthermore, we illustrate that acetylation of fructose-bisphosphate aldolase and glycerol-3-phosphate dehydrogenase serves as a cellular mechanism to switch off enzymatic activity.

Biological invasion hotspots: a trait-based perspective reveals new sub-continental patterns

Science.gov (United States)

Basil V. Iannone III; Kevin M. Potter; Qinfeng Guo; Andrew M. Liebhold; Bryan C. Pijanowski; Christopher M. Oswalt; Songlin Fei

2015-01-01

Invader traits (including plant growth form) may play an important, and perhaps overlooked, role in determining macroscale patterns of biological invasions and therefore warrant greater consideration in future investigations aimed at understanding these patterns. To assess this need, we used empirical data from a national-level survey of forest in the contiguous 48...

Machine learning methods reveal the temporal pattern of dengue incidence using meteorological factors in metropolitan Manila, Philippines.

Science.gov (United States)

Carvajal, Thaddeus M; Viacrusis, Katherine M; Hernandez, Lara Fides T; Ho, Howell T; Amalin, Divina M; Watanabe, Kozo

2018-04-17

Several studies have applied ecological factors such as meteorological variables to develop models and accurately predict the temporal pattern of dengue incidence or occurrence. With the vast amount of studies that investigated this premise, the modeling approaches differ from each study and only use a single statistical technique. It raises the question of whether which technique would be robust and reliable. Hence, our study aims to compare the predictive accuracy of the temporal pattern of Dengue incidence in Metropolitan Manila as influenced by meteorological factors from four modeling techniques, (a) General Additive Modeling, (b) Seasonal Autoregressive Integrated Moving Average with exogenous variables (c) Random Forest and (d) Gradient Boosting. Dengue incidence and meteorological data (flood, precipitation, temperature, southern oscillation index, relative humidity, wind speed and direction) of Metropolitan Manila from January 1, 2009 - December 31, 2013 were obtained from respective government agencies. Two types of datasets were used in the analysis; observed meteorological factors (MF) and its corresponding delayed or lagged effect (LG). After which, these datasets were subjected to the four modeling techniques. The predictive accuracy and variable importance of each modeling technique were calculated and evaluated. Among the statistical modeling techniques, Random Forest showed the best predictive accuracy. Moreover, the delayed or lag effects of the meteorological variables was shown to be the best dataset to use for such purpose. Thus, the model of Random Forest with delayed meteorological effects (RF-LG) was deemed the best among all assessed models. Relative humidity was shown to be the top-most important meteorological factor in the best model. The study exhibited that there are indeed different predictive outcomes generated from each statistical modeling technique and it further revealed that the Random forest model with delayed meteorological

Large-scale flows, sheet plumes and strong magnetic fields in a rapidly rotating spherical dynamo

Science.gov (United States)

Takahashi, F.

2011-12-01

Mechanisms of magnetic field intensification by flows of an electrically conducting fluid in a rapidly rotating spherical shell is investigated. Bearing dynamos of the Eartn and planets in mind, the Ekman number is set at 10-5. A strong dipolar solution with magnetic energy 55 times larger than the kinetic energy of thermal convection is obtained. In a regime of small viscosity and inertia with the strong magnetic field, convection structure consists of a few large-scale retrograde flows in the azimuthal direction and sporadic thin sheet-like plumes. The magnetic field is amplified through stretching of magnetic lines, which occurs typically through three types of flow: the retrograde azimuthal flow near the outer boundary, the downwelling flow of the sheet plume, and the prograde azimuthal flow near the rim of the tangent cylinder induced by the downwelling flow. It is found that either structure of current loops or current sheets is accompanied in each flow structure. Current loops emerge as a result of stretching the magnetic lines along the magnetic field, wheres the current sheets are formed to counterbalance the Coriolis force. Convection structure and processes of magnetic field generation found in the present model are distinct from those in models at larger/smaller Ekman number.

Three-dimensional dynamo-thermo-elastic analysis of a functionally graded cylindrical shell with piezoelectric layers by DQ-FD coupled

International Nuclear Information System (INIS)

Akbari Alashti, R.; Khorsand, M.

2012-01-01

Three-dimensional elastic analysis is carried out for functionally graded cylindrical shells bonded with piezoelectric layers subjected to dynamic and thermal loads. Material properties are assumed to be graded in the radial direction obeying a simple power law with constant Poisson's ratio. Two versions of differential quadrature (DQ) method coupled with the finite difference (FD) method are employed to discretize the governing differential equations in space and time domains. The convergence is studied and results of the axisymmetric loadings are verified with reported results. Effects of the grading index of material properties, thermal gradient, boundary conditions, thickness of piezoelectric layers and electric excitation on stress, displacement, electric and temperature fields are presented. Highlights: ► Dynamo-thermo-elastic analysis of an FGM shell with piezoelectric layer is carried out. ► Governing equations are solved by DQ-FD coupled. ► Effects of grading index, temperature difference and piezoelectric thickness are presented.

Использование продукции Autodesk и Dynamo в тоннелестроении

OpenAIRE

Мусиенко, Ю. А.

2017-01-01

In this article the speech about expediency of application of BIM of modeling will go to tunneling. We will review a concrete example of modeling of a tunnel with application of a linking of Revit and Dynamo. I will tell you about benefits on economic indicators and you will be pleasantly surprised.

Magnetic spiral arms in galaxy haloes

Science.gov (United States)

Henriksen, R. N.

2017-08-01

We seek the conditions for a steady mean field galactic dynamo. The parameter set is reduced to those appearing in the α2 and α/ω dynamo, namely velocity amplitudes, and the ratio of sub-scale helicity to diffusivity. The parameters can be allowed to vary on conical spirals. We analyse the mean field dynamo equations in terms of scale invariant logarithmic spiral modes and special exact solutions. Compatible scale invariant gravitational spiral arms are introduced and illustrated in an appendix, but the detailed dynamical interaction with the magnetic field is left for another work. As a result of planar magnetic spirals `lifting' into the halo, multiple sign changes in average rotation measures forming a regular pattern on each side of the galactic minor axis, are predicted. Such changes have recently been detected in the Continuum Halos in Nearby Galaxies-an EVLA Survey (CHANG-ES) survey.

Convective Cold Pool Structure and Boundary Layer Recovery in DYNAMO

Science.gov (United States)

Savarin, A.; Chen, S. S.; Kerns, B. W.; Lee, C.; Jorgensen, D. P.

2012-12-01

One of the key factors controlling convective cloud systems in the Madden-Julian Oscillation (MJO) over the tropical Indian Ocean is the property of the atmospheric boundary layer. Convective downdrafts and precipitation from the cloud systems produce cold pools in the boundary layer, which can inhibit subsequent development of convection. The recovery time is the time it takes for the boundary layer to return to pre convective conditions. It may affect the variability of the convection on various time scales during the initiation of MJO. This study examines the convective cold pool structure and boundary layer recovery using the NOAA WP-3D aircraft observations, include the flight-level, Doppler radar, and GPS dropsonde data, collected during the Dynamics of MJO (DYNAMO) field campaign from November-December 2011. The depth and strength of convective cold pools are defined by the negative buoyancy, which can be computed from the dropsonde data. Convective downdraft can be affected by environmental water vapor due to entrainment. Mid-level dry air observed during the convectively suppressed phase of MJO seems to enhance convective downdraft, making the cold pools stronger and deeper. Recovery of the cold pools in the boundary layer is determined by the strength and depth of the cold pools and also the air-sea heat and moisture fluxes. Given that the water vapor and surface winds are distinct for the convectively active and suppressed phases of MJO over the Indian Ocean, the aircraft data are stratified by the two different large-scale regimes of MJO. Preliminary results show that the strength and depth of the cold pools are inversely correlated with the surrounding mid-level moisture. During the convectively suppressed phase, the recovery time is ~5-20 hours in relative weak wind condition with small air-sea fluxes. The recovery time is generally less than 6 hours during the active phase of MJO with moist mid-levels and stronger surface wind and air-sea fluxes.

Revealing the surface pattern of medieval pattern welded iron objects - etching tests conducted on reconstructed composites

Czech Academy of Sciences Publication Activity Database

Thiele, Á.; Hošek, Jiří; Haramza, M.; Török, B.

2014-01-01

Roč. 25, č. 1 (2014), s. 18-24 ISSN 1805-7241 R&D Projects: GA ČR GAP405/12/2289 Institutional support: RVO:67985912 Keywords : etching * pattern welding * phosphoric iron * archaeometallurgy Subject RIV: AC - Archeology, Anthropology, Ethnology

Magnetic resonance imaging-based cerebral tissue classification reveals distinct spatiotemporal patterns of changes after stroke in non-human primates.

Science.gov (United States)

Bouts, Mark J R J; Westmoreland, Susan V; de Crespigny, Alex J; Liu, Yutong; Vangel, Mark; Dijkhuizen, Rick M; Wu, Ona; D'Arceuil, Helen E

2015-12-15

Spatial and temporal changes in brain tissue after acute ischemic stroke are still poorly understood. Aims of this study were three-fold: (1) to determine unique temporal magnetic resonance imaging (MRI) patterns at the acute, subacute and chronic stages after stroke in macaques by combining quantitative T2 and diffusion MRI indices into MRI 'tissue signatures', (2) to evaluate temporal differences in these signatures between transient (n = 2) and permanent (n = 2) middle cerebral artery occlusion, and (3) to correlate histopathology findings in the chronic stroke period to the acute and subacute MRI derived tissue signatures. An improved iterative self-organizing data analysis algorithm was used to combine T2, apparent diffusion coefficient (ADC), and fractional anisotropy (FA) maps across seven successive timepoints (1, 2, 3, 24, 72, 144, 240 h) which revealed five temporal MRI signatures, that were different from the normal tissue pattern (P MRI signatures associated with specific tissue fates may further aid in assessing and monitoring the efficacy of novel pharmaceutical treatments for stroke in a pre-clinical and clinical setting.

Where Do Data Go When They Die? Attaining Data Salvation Through the Establishment of a Solar Dynamo Dataverse

Science.gov (United States)

Munoz-Jaramillo, Andres

2016-05-01

The arrival of a highly interconnected digital age with practically limitless data storage capacity has brought with it a significant shift in which scientific data is stored and distributed (i.e. from being in the hands of a small group of scientists to being openly and freely distributed for anyone to use). However, the vertiginous speed at which hardware, software, and the nature of the internet changes has also sped up the rate at which data is lost due to formatting obsolescence and loss of access.This poster is meant to advertise the creation of a highly permanent data repository (within the context of Harvard's Dataverse), curated to contain datasets of high relevance for the study, and prediction of the solar dynamo, solar cycle, and long-term solar variability. This repository has many advantages over traditional data storage like the assignment of unique DOI identifiers for each database (making it easier for scientist to directly cite them), and the automatic versioning of each database so that all data are able to attain salvation.

Growth patterns of an intertidal gastropod as revealed by oxygen isotope analysis

Science.gov (United States)

Bean, J. R.; Hill, T. M.; Guerra, C.

2007-12-01

The size and morphology of mollusk shells are affected by environmental conditions. As a result, it is difficult to assess growth rate, population age structure, shell morphologies associated with ontogenetic stages, and to compare life history patterns across various environments. Oxygen isotope analysis is a useful tool for estimating minimum ages and growth rates of calcium carbonate secreting organisms. Calcite shell material from members of two northern California populations of the intertidal muricid gastropod Acanthinucella spirata was sampled for isotopic analysis. Individual shells were sampled from apex to margin, thus providing a sequential record of juvenile and adult growth. A. spirata were collected from a sheltered habitat in Tomales Bay and from an exposed reef in Bolinas. Abiotic factors, such as temperature, wave exposure, and substrate consistency, and biotic composition differ significantly between these sites, possibly resulting in local adaptations and variation in life history and growth patterns. Shell morphology of A. spirata changes with age as internal shell margin thickenings of denticle rows associated with external growth bands are irregularly accreted. It is not known when, either seasonally and/or ontogentically, these thickenings and bands form or whether inter or intra-populational variation exists. Preliminary results demonstrate the seasonal oxygen isotopic variability present at the two coastal sites, indicating 5-6 degC changes from winter to summertime temperatures; these data are consistent with local intertidal temperature records. Analysis of the seasonal patterns indicate that: 1) differences in growth rate and seasonal growth patterns at different ontogenetic stages within populations, and 2) differences in growth patterns and possibly age structure between the two A. spirata populations. These findings indicate that isotopic analyses, in addition to field observations and morphological measurements, are necessary to

An ancestral stomatal patterning module revealed in the non-vascular land plant Physcomitrella patens

Science.gov (United States)

Chater, Caspar C.; Kamisugi, Yasuko

2016-01-01

The patterning of stomata plays a vital role in plant development and has emerged as a paradigm for the role of peptide signals in the spatial control of cellular differentiation. Research in Arabidopsis has identified a series of epidermal patterning factors (EPFs), which interact with an array of membrane-localised receptors and associated proteins (encoded by ERECTA and TMM genes) to control stomatal density and distribution. However, although it is well-established that stomata arose very early in the evolution of land plants, until now it has been unclear whether the established angiosperm stomatal patterning system represented by the EPF/TMM/ERECTA module reflects a conserved, universal mechanism in the plant kingdom. Here, we use molecular genetics to show that the moss Physcomitrella patens has conserved homologues of angiosperm EPF, TMM and at least one ERECTA gene that function together to permit the correct patterning of stomata and that, moreover, elements of the module retain function when transferred to Arabidopsis. Our data characterise the stomatal patterning system in an evolutionarily distinct branch of plants and support the hypothesis that the EPF/TMM/ERECTA module represents an ancient patterning system. PMID:27407102

Self-similar hierarchical energetics in the ICM of massive galaxy clusters

Science.gov (United States)

Miniati, Francesco; Beresnyak, Andrey

Massive galaxy clusters (GC) are filled with a hot, turbulent and magnetised intra-cluster medium (ICM). They are still forming under the action of gravitational instability, which drives supersonic mass accretion flows. These partially dissipate into heat through a complex network of large scale shocks, and partly excite giant turbulent eddies and cascade. Turbulence dissipation not only contributes to heating of the ICM but also amplifies magnetic energy by way of dynamo action. The pattern of gravitational energy turning into kinetic, thermal, turbulent and magnetic is a fundamental feature of GC hydrodynamics but quantitative modelling has remained a challenge. In this contribution we present results from a recent high resolution, fully cosmological numerical simulation of a massive Coma-like galaxy cluster in which the time dependent turbulent motions of the ICM are resolved (Miniati 2014) and their statistical properties are quantified for the first time (Miniati 2015, Beresnyak & Miniati 2015). We combine these results with independent state-of-the art numerical simulations of MHD turbulence (Beresnyak 2012), which shows that in the nonlinear regime of turbulent dynamo (for magnetic Prandtl numbers>~ 1) the growth rate of the magnetic energy corresponds to a fraction CE ~= 4 - 5 × 10-2 of the turbulent dissipation rate. We thus determine without adjustable parameters the thermal, turbulent and magnetic history of giant GC (Miniati & Beresnyak 2015). We find that the energy components of the ICM are ordered according to a permanent hierarchy, in which the sonic Mach number at the turbulent injection scale is of order unity, the beta of the plasma of order forty and the ratio of turbulent injection scale to Alfvén scale is of order one hundred. These dimensionless numbers remain virtually unaltered throughout the cluster's history, despite evolution of each individual component and the drive towards equipartition of the turbulent dynamo, thus revealing a new

Roles for SH2 and SH3 domains in Lyn kinase association with activated FcepsilonRI in RBL mast cells revealed by patterned surface analysis.

Science.gov (United States)

Hammond, Stephanie; Wagenknecht-Wiesner, Alice; Veatch, Sarah L; Holowka, David; Baird, Barbara

2009-10-01

In mast cells, antigen-mediated cross-linking of IgE bound to its high-affinity surface receptor, FcepsilonRI, initiates a signaling cascade that culminates in degranulation and release of allergic mediators. Antigen-patterned surfaces, in which the antigen is deposited in micron-sized features on a silicon substrate, were used to examine the spatial relationship between clustered IgE-FcepsilonRI complexes and Lyn, the signal-initiating tyrosine kinase. RBL mast cells expressing wild-type Lyn-EGFP showed co-redistribution of this protein with clustered IgE receptors on antigen-patterned surfaces, whereas Lyn-EGFP containing an inhibitory point mutation in its SH2 domain did not significantly accumulate with the patterned antigen, and Lyn-EGFP with an inhibitory point mutation in its SH3 domain exhibited reduced interactions. Our results using antigen-patterned surfaces and quantitative cross-correlation image analysis reveal that both the SH2 and SH3 domains contribute to interactions between Lyn kinase and cross-linked IgE receptors in stimulated mast cells.

Generalised power graph compression reveals dominant relationship patterns in complex networks.

Science.gov (United States)

Ahnert, Sebastian E

2014-03-25

We introduce a framework for the discovery of dominant relationship patterns in complex networks, by compressing the networks into power graphs with overlapping power nodes. When paired with enrichment analysis of node classification terms, the most compressible sets of edges provide a highly informative sketch of the dominant relationship patterns that define the network. In addition, this procedure also gives rise to a novel, link-based definition of overlapping node communities in which nodes are defined by their relationships with sets of other nodes, rather than through connections within the community. We show that this completely general approach can be applied to undirected, directed, and bipartite networks, yielding valuable insights into the large-scale structure of real-world networks, including social networks and food webs. Our approach therefore provides a novel way in which network architecture can be studied, defined and classified.

Costochondral ossification pattern. Analysis by 3-dimensional CT image

International Nuclear Information System (INIS)

Ma, Hailong; Nakatani, Kimiko

2005-01-01

We reviewed about an ossification pattern of costal cartilage with using three dimensional images made from computed tomography. We analyzed ossification of 16 costal cartilages in each case. We classified ossification pattern into eight groups by its configuration in one hundred cases. The sexual specificity of ossification pattern was revealed, and we can determinate sex in 82%. It was also revealed that ossification grows with increasing age. Finally, the knowledge of costochondral ossification pattern must help in case of reading chest radiographs. (author)

Different localization patterns of anthocyanin species in the pericarp of black rice revealed by imaging mass spectrometry.

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Yukihiro Yoshimura

Full Text Available Black rice (Oryza sativa L. Japonica contains high levels of anthocyanins in the pericarp and is considered an effective health-promoting food. Several studies have identified the molecular species of anthocyanins in black rice, but information about the localization of each anthocyanin species is limited because methodologies for investigating the localization such as determining specific antibodies to anthocyanin, have not yet been developed Matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI-IMS is a suitable tool for investigating the localization of metabolites. In this study, we identified 7 species of anthocyanin monoglycosides and 2 species of anthocyanin diglycosides in crude extracts from black rice by matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS analysis. We also analyzed black rice sections by MALDI-IMS and found 2 additional species of anthocyanin pentosides and revealed different localization patterns of anthocyanin species composed of different sugar moieties. Anthocyanin species composed of a pentose moiety (cyanidin-3-O-pentoside and petunidin-3-O-pentoside were localized in the entire pericarp, whereas anthocyanin species composed of a hexose moiety (cyanidin-3-O-hexoside and peonidin-3-O-hexoside were focally localized in the dorsal pericarp. These results indicate that anthocyanin species composed of different sugar moieties exhibit different localization patterns in the pericarp of black rice. This is the first detailed investigation into the localization of molecular species of anthocyanins by MALDI-IMS.

Phylogeny and patterns of diversity of goat mtDNA haplogroup A revealed by resequencing complete mitogenomes.

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Maria Grazia Doro

Full Text Available We sequenced to near completion the entire mtDNA of 28 Sardinian goats, selected to represent the widest possible diversity of the most widespread mitochondrial evolutionary lineage, haplogroup (Hg A. These specimens were reporters of the diversity in the island but also elsewhere, as inferred from their affiliation to each of 11 clades defined by D-loop variation. Two reference sequences completed the dataset. Overall, 206 variations were found in the full set of 30 sequences, of which 23 were protein-coding non-synonymous single nucleotide substitutions. Many polymorphic sites within Hg A were informative for the reconstruction of its internal phylogeny. Bayesian and network clustering revealed a general similarity over the entire molecule of sequences previously assigned to the same D-loop clade, indicating evolutionarily meaningful lineages. Two major sister groupings emerged within Hg A, which parallel distinct geographical distributions of D-loop clades in extant stocks. The pattern of variation in protein-coding genes revealed an overwhelming role of purifying selection, with the quota of surviving variants approaching neutrality. However, a simple model of relaxation of selection for the bulk of variants here reported should be rejected. Non-synonymous diversity of Hg's A, B and C denoted that a proportion of variants not greater than that allowed in the wild was given the opportunity to spread into domesticated stocks. Our results also confirmed that a remarkable proportion of pre-existing Hg A diversity became incorporated into domestic stocks. Our results confirm clade A11 as a well differentiated and ancient lineage peculiar of Sardinia.

The dynomak: An advanced spheromak reactor concept with imposed-dynamo current drive and next-generation nuclear power technologies

Energy Technology Data Exchange (ETDEWEB)

Sutherland, D.A., E-mail: das1990@uw.edu; Jarboe, T.R.; Morgan, K.D.; Pfaff, M.; Lavine, E.S.; Kamikawa, Y.; Hughes, M.; Andrist, P.; Marklin, G.; Nelson, B.A.

2014-04-15

A high-β spheromak reactor concept has been formulated with an estimated overnight capital cost that is competitive with conventional power sources. This reactor concept utilizes recently discovered imposed-dynamo current drive (IDCD) and a molten salt (FLiBe) blanket system for first wall cooling, neutron moderation and tritium breeding. Currently available materials and ITER-developed cryogenic pumping systems were implemented in this concept from the basis of technological feasibility. A tritium breeding ratio (TBR) of greater than 1.1 has been calculated using a Monte Carlo N-Particle (MCNP5) neutron transport simulation. High temperature superconducting tapes (YBCO) were used for the equilibrium coil set, substantially reducing the recirculating power fraction when compared to previous spheromak reactor studies. Using zirconium hydride for neutron shielding, a limiting equilibrium coil lifetime of at least thirty full-power years has been achieved. The primary FLiBe loop was coupled to a supercritical carbon dioxide Brayton cycle due to attractive economics and high thermal efficiencies. With these advancements, an electrical output of 1000 MW from a thermal output of 2486 MW was achieved, yielding an overall plant efficiency of approximately 40%.

Multivariate pattern analysis reveals anatomical connectivity differences between the left and right mesial temporal lobe epilepsy.

Science.gov (United States)

Fang, Peng; An, Jie; Zeng, Ling-Li; Shen, Hui; Chen, Fanglin; Wang, Wensheng; Qiu, Shijun; Hu, Dewen

2015-01-01

Previous studies have demonstrated differences of clinical signs and functional brain network organizations between the left and right mesial temporal lobe epilepsy (mTLE), but the anatomical connectivity differences underlying functional variance between the left and right mTLE remain uncharacterized. We examined 43 (22 left, 21 right) mTLE patients with hippocampal sclerosis and 39 healthy controls using diffusion tensor imaging. After the whole-brain anatomical networks were constructed for each subject, multivariate pattern analysis was applied to classify the left mTLE from the right mTLE and extract the anatomical connectivity differences between the left and right mTLE patients. The classification results reveal 93.0% accuracy for the left mTLE versus the right mTLE, 93.4% accuracy for the left mTLE versus controls and 90.0% accuracy for the right mTLE versus controls. Compared with the right mTLE, the left mTLE exhibited a different connectivity pattern in the cortical-limbic network and cerebellum. The majority of the most discriminating anatomical connections were located within or across the cortical-limbic network and cerebellum, thereby indicating that these disease-related anatomical network alterations may give rise to a portion of the complex of emotional and memory deficit between the left and right mTLE. Moreover, the orbitofrontal gyrus, cingulate cortex, hippocampus and parahippocampal gyrus, which exhibit high discriminative power in classification, may play critical roles in the pathophysiology of mTLE. The current study demonstrated that anatomical connectivity differences between the left mTLE and the right mTLE may have the potential to serve as a neuroimaging biomarker to guide personalized diagnosis of the left and right mTLE.

Segment polarity gene expression in a myriapod reveals conserved and diverged aspects of early head patterning in arthropods.

Science.gov (United States)

Janssen, Ralf

2012-09-01

Arthropods show two kinds of developmental mode. In the so-called long germ developmental mode (as exemplified by the fly Drosophila), all segments are formed almost simultaneously from a preexisting field of cells. In contrast, in the so-called short germ developmental mode (as exemplified by the vast majority of arthropods), only the anterior segments are patterned similarly as in Drosophila, and posterior segments are added in a single or double segmental periodicity from a posterior segment addition zone (SAZ). The addition of segments from the SAZ is controlled by dynamic waves of gene activity. Recent studies on a spider have revealed that a similar dynamic process, involving expression of the segment polarity gene (SPG) hedgehog (hh), is involved in the formation of the anterior head segments. The present study shows that in the myriapod Glomeris marginata the early expression of hh is also in a broad anterior domain, but this domain corresponds only to the ocular and antennal segment. It does not, like in spiders, represent expression in the posterior adjacent segment. In contrast, the anterior hh pattern is conserved in Glomeris and insects. All investigated myriapod SPGs and associated factors are expressed with delay in the premandibular (tritocerebral) segment. This delay is exclusively found in insects and myriapods, but not in chelicerates, crustaceans and onychophorans. Therefore, it may represent a synapomorphy uniting insects and myriapods (Atelocerata hypothesis), contradicting the leading opinion that suggests a sister relationship of crustaceans and insects (Pancrustacea hypothesis). In Glomeris embryos, the SPG engrailed is first expressed in the mandibular segment. This feature is conserved in representatives of all arthropod classes suggesting that the mandibular segment may have a special function in anterior patterning.

Chronic malaria revealed by a new fluorescence pattern on the antinuclear autoantibodies test.

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Benjamin Hommel

Full Text Available BACKGROUND: Several clinical forms of malaria such as chronic carriage, gestational malaria or hyper-reactive malarial splenomegaly may follow a cryptic evolution with afebrile chronic fatigue sometimes accompanied by anemia and/or splenomegaly. Conventional parasitological tests are often negative or not performed, and severe complications may occur. Extensive explorations of these conditions often include the search for antinuclear autoantibodies (ANA. METHODS: We analysed fluorescence patterns in the ANA test in patients with either chronic cryptic or acute symptomatic malaria, then conducted a one-year prospective study at a single hospital on all available sera drawn for ANA detections. We then identified autoantibodies differentially expressed in malaria patients and in controls using human protein microarray. RESULTS: We uncovered and defined a new, malaria-related, nucleo-cytoplasmic ANA pattern displaying the specific association of a nuclear speckled pattern with diffuse cytoplasmic perinuclearly-enhanced fluorescence. In the one-year prospective analysis, 79% of sera displaying this new nucleo-cytoplasmic fluorescence were from patients with malaria. This specific pattern, not seen in other parasitic diseases, allowed a timely reorientation of the diagnosis toward malaria. To assess if the autoantibody immune response was due to autoreactivity or molecular mimicry we isolated 42 autoantigens, targets of malarial autoantibodies. BLAST analysis indicated that 23 of recognized autoantigens were homologous to plasmodial proteins suggesting autoimmune responses directly driven by the plasmodial infection. CONCLUSION: In patients with malaria in whom parasitological tests have not been performed recognition of this new, malaria-related fluorescence pattern on the ANA test is highly suggestive of the diagnosis and triggers immediate, easy confirmation and adapted therapy.

Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences

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De Marzo Angelo M

2011-06-01

Full Text Available Abstract Background DNA methylation has been linked to genome regulation and dysregulation in health and disease respectively, and methods for characterizing genomic DNA methylation patterns are rapidly emerging. We have developed/refined methods for enrichment of methylated genomic fragments using the methyl-binding domain of the human MBD2 protein (MBD2-MBD followed by analysis with high-density tiling microarrays. This MBD-chip approach was used to characterize DNA methylation patterns across all non-repetitive sequences of human chromosomes 21 and 22 at high-resolution in normal and malignant prostate cells. Results Examining this data using computational methods that were designed specifically for DNA methylation tiling array data revealed widespread methylation of both gene promoter and non-promoter regions in cancer and normal cells. In addition to identifying several novel cancer hypermethylated 5' gene upstream regions that mediated epigenetic gene silencing, we also found several hypermethylated 3' gene downstream, intragenic and intergenic regions. The hypermethylated intragenic regions were highly enriched for overlap with intron-exon boundaries, suggesting a possible role in regulation of alternative transcriptional start sites, exon usage and/or splicing. The hypermethylated intergenic regions showed significant enrichment for conservation across vertebrate species. A sampling of these newly identified promoter (ADAMTS1 and SCARF2 genes and non-promoter (downstream or within DSCR9, C21orf57 and HLCS genes hypermethylated regions were effective in distinguishing malignant from normal prostate tissues and/or cell lines. Conclusions Comparison of chromosome-wide DNA methylation patterns in normal and malignant prostate cells revealed significant methylation of gene-proximal and conserved intergenic sequences. Such analyses can be easily extended for genome-wide methylation analysis in health and disease.

Transcriptomics reveal several gene expression patterns in the piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure.

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Amira Amrani

Full Text Available RNA-seq was used to study the response of Desulfovibrio hydrothermalis, isolated from a deep-sea hydrothermal chimney on the East-Pacific Rise at a depth of 2,600 m, to various hydrostatic pressure growth conditions. The transcriptomic datasets obtained after growth at 26, 10 and 0.1 MPa identified only 65 differentially expressed genes that were distributed among four main categories: aromatic amino acid and glutamate metabolisms, energy metabolism, signal transduction, and unknown function. The gene expression patterns suggest that D. hydrothermalis uses at least three different adaptation mechanisms, according to a hydrostatic pressure threshold (HPt that was estimated to be above 10 MPa. Both glutamate and energy metabolism were found to play crucial roles in these mechanisms. Quantitation of the glutamate levels in cells revealed its accumulation at high hydrostatic pressure, suggesting its role as a piezolyte. ATP measurements showed that the energy metabolism of this bacterium is optimized for deep-sea life conditions. This study provides new insights into the molecular mechanisms linked to hydrostatic pressure adaptation in sulfate-reducing bacteria.

Transcriptomics Reveal Several Gene Expression Patterns in the Piezophile Desulfovibrio hydrothermalis in Response to Hydrostatic Pressure

Science.gov (United States)

Amrani, Amira; Bergon, Aurélie; Holota, Hélène; Tamburini, Christian; Garel, Marc; Ollivier, Bernard; Imbert, Jean; Dolla, Alain; Pradel, Nathalie

2014-01-01

RNA-seq was used to study the response of Desulfovibrio hydrothermalis, isolated from a deep-sea hydrothermal chimney on the East-Pacific Rise at a depth of 2,600 m, to various hydrostatic pressure growth conditions. The transcriptomic datasets obtained after growth at 26, 10 and 0.1 MPa identified only 65 differentially expressed genes that were distributed among four main categories: aromatic amino acid and glutamate metabolisms, energy metabolism, signal transduction, and unknown function. The gene expression patterns suggest that D. hydrothermalis uses at least three different adaptation mechanisms, according to a hydrostatic pressure threshold (HPt) that was estimated to be above 10 MPa. Both glutamate and energy metabolism were found to play crucial roles in these mechanisms. Quantitation of the glutamate levels in cells revealed its accumulation at high hydrostatic pressure, suggesting its role as a piezolyte. ATP measurements showed that the energy metabolism of this bacterium is optimized for deep-sea life conditions. This study provides new insights into the molecular mechanisms linked to hydrostatic pressure adaptation in sulfate-reducing bacteria. PMID:25215865

Plasma response to sustainment with imposed-dynamo current drive in HIT-SI and HIT-SI3

Science.gov (United States)

Hossack, A. C.; Jarboe, T. R.; Chandra, R. N.; Morgan, K. D.; Sutherland, D. A.; Penna, J. M.; Everson, C. J.; Nelson, B. A.

2017-07-01

The helicity injected torus—steady inductive (HIT-SI) program studies efficient, steady-state current drive for magnetic confinement plasmas using a novel experimental method. Stable, high-beta spheromaks have been sustained using steady, inductive current drive. Externally induced loop voltage and magnetic flux are oscillated together so that helicity and power injection are always positive, sustaining the edge plasma current indefinitely. Imposed-dynamo current drive (IDCD) theory further shows that the entire plasma current is sustained. The method is ideal for low aspect ratio, toroidal geometries with closed flux surfaces. Experimental studies of spheromak plasmas sustained with IDCD have shown stable magnetic profiles with evidence of pressure confinement. New measurements show coherent motion of a stable spheromak in response to the imposed perturbations. On the original device two helicity injectors were mounted on either side of the spheromak and the injected mode spectrum was predominantly n  =  1. Coherent, rigid motion indicates that the spheromak is stable and a lack of plasma-generated n  =  1 energy indicates that the maximum q is maintained below 1 during sustainment. Results from the HIT-SI3 device are also presented. Three inductive helicity injectors are mounted on one side of the spheromak flux conserver. Varying the relative injector phasing changes the injected mode spectrum which includes n  =  2, 3, and higher modes.

Evapotranspiration patterns in complex upland forests reveal contrasting topographic thresholds of non-linearity

Science.gov (United States)

Metzen, D.; Sheridan, G. J.; Benyon, R. G.; Bolstad, P. V.; Nyman, P.; Lane, P. N. J.

2017-12-01

Large areas of forest are often treated as being homogeneous just because they fall in a single climate category. However, we observe strong vegetation patterns in relation to topography in SE Australian forests and thus hypothesise that ET will vary spatially as well. Spatial heterogeneity evolves over different temporal scales in response to climatic forcing with increasing time lag from soil moisture (sub-yearly), to vegetation (10s -100s of years) to soil properties and topography (>100s of years). Most importantly, these processes and time scales are not independent, creating feedbacks that result in "co-evolved stable states" which yield the current spatial terrain, vegetation and ET patterns. We used up-scaled sap flux and understory ET measurements from water-balance plots, as well as LiDAR derived terrain and vegetation information, to infer links between spatio-temporal energy and water fluxes, topography and vegetation patterns at small catchment scale. Topography caused variations in aridity index between polar and equatorial-facing slopes (1.3 vs 1.8), which in turn manifested in significant differences in sapwood area index (6.9 vs 5.8), overstory LAI (3.0 vs 2.3), understory LAI (0.5 vs 0.4), sub-canopy radiation load (4.6 vs 6.8 MJ m-2 d-1), overstory transpiration (501 vs 347 mm a-1) and understory ET (79 vs 155 mm a-1). Large spatial variation in overstory transpiration (195 to 891 mm a-1) was observed over very short distances (100s m); a range representative of diverse forests such as arid open woodlands and wet mountain ash forests. Contrasting, non-linear overstory and understory ET patterns were unveiled between aspects, and topographic thresholds were lower for overstory than understory ET. While ET partitioning remained stable on polar-facing slopes regardless of slope position, overstory contribution gradually decreased with increasing slope inclination on equatorial aspects. Further, we show that ET patterns and controls underlie strong

Reliable and rapid characterization of functional FCN2 gene variants reveals diverse geographical patterns

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Ojurongbe Olusola

2012-05-01

Full Text Available Abstract Background Ficolin-2 coded by FCN2 gene is a soluble serum protein and an innate immune recognition element of the complement system. FCN2 gene polymorphisms reveal distinct geographical patterns and are documented to alter serum ficolin levels and modulate disease susceptibility. Methods We employed a real-time PCR based on Fluorescence Resonance Energy Transfer (FRET method to genotype four functional SNPs including -986 G > A (#rs3124952, -602 G > A (#rs3124953, -4A > G (#rs17514136 and +6424 G > T (#rs7851696 in the ficolin-2 (FCN2 gene. We characterized the FCN2 variants in individuals representing Brazilian (n = 176, Nigerian (n = 180, Vietnamese (n = 172 and European Caucasian ethnicity (n = 165. Results We observed that the genotype distribution of three functional SNP variants (−986 G > A, -602 G > A and -4A > G differ significantly between the populations investigated (p p  Conclusions The observed distribution of the FCN2 functional SNP variants may likely contribute to altered serum ficolin levels and this may depend on the different disease settings in world populations. To conclude, the use of FRET based real-time PCR especially for FCN2 gene will benefit a larger scientific community who extensively depend on rapid, reliable method for FCN2 genotyping.

A theory of the Earth's magnetic field and of sunspots, based on a self-excited dynamo incorporating the Hall effect

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A. de Paor

2001-01-01

Full Text Available A new viewpoint on the generation and maintenance of the Earth's magnetic field is put forward, which integrates self-exciting dynamo theory with the possibility of energy coupling along orthogonal axes provided by the Hall effect. A nonlinear third-order system is derived, with a fourth equation serving as an observer of unspecified geophysical processes which could result in field reversal. Lyapunov analysis proves that chaos is not intrinsic to this system. Relative constancy of one of the variables produces pseudo equilibrium in a second order subsystem and allows for self-excitation of the geomagnetic field. Electromagnetic analysis yields expressions for key parameters. Models for secular variations recorded at London, Palermo and at the Cape of Good Hope over the past four hundred years are offered. Offset of the Earth's magnetic axis from the geographic axis is central to time-varying declination, but its causes have not yet been established. Applicability of the model to the explanation of sunspot activity is outlined. A corroborating experiment published by Peter Barlow in 1831 is appended.

Cell patterning on poly(sodium 4-styrenesulfonate)-patterned fluoropolymer substrate

Energy Technology Data Exchange (ETDEWEB)

Kim, Wan-Joong [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Department of Polymer Science and Engineering, Chungnam National University, Yuseong-gu, Daejeon 305-764 (Korea, Republic of); Jung, Chang-Hee; Hwang, In-Tae [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Jung, Chan-Hee, E-mail: jch@kaeri.re.kr [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Choi, Jae-Hak, E-mail: jaehakchoi@cnu.ac.kr [Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup-si, Jeollabuk-do 580-185 (Korea, Republic of); Department of Polymer Science and Engineering, Chungnam National University, Yuseong-gu, Daejeon 305-764 (Korea, Republic of); Hong, Sung-Kwon [Department of Polymer Science and Engineering, Chungnam National University, Yuseong-gu, Daejeon 305-764 (Korea, Republic of)

2013-10-15

Highlights: •PFA films were functionalized by ion-beam induced surface graft polymerization. •Poly(sodium 4-styrenesulfonate) (PSS)-patterned PFA films were prepared. •Well-organized cell patterns were obtained on PSS-patterned PFA films. •This method is useful to fabricate bio-platforms for cell-based biodevices. -- Abstract: The surface functionalization of bio-inert fluoropolymer films through ion beam-induced surface graft polymerization was investigated to control the cellular behavior. The surface of poly(tetrafluoroethylene-co-perfluoropropl vinyl ether) (PFA) films was selectively activated by 150 keV H{sup +} ion implantation in the presence of a pattern mask and sodium 4-styrenesulfonate (SS) was then graft polymerized onto the implanted PFA films to form hydrophilic poly(sodium 4-styrenesulfonate) (PSS)-patterned PFA films. The surface of the resulting PSS-patterned PFA films was investigated in terms of the degree of graft polymerization, chemical structure, chemical composition, wettability, and morphology. The analytical results revealed that PSS was selectively grafted onto the implanted regions of the PFA films. Furthermore, in vitro cell culture on the PSS-patterned PFA films exhibited a preferential adhesion and growth of cells onto the PSS-grafted regions, resulting in well-organized 100 μm cell patterns.

Cell patterning on poly(sodium 4-styrenesulfonate)-patterned fluoropolymer substrate

International Nuclear Information System (INIS)

Kim, Wan-Joong; Jung, Chang-Hee; Hwang, In-Tae; Jung, Chan-Hee; Choi, Jae-Hak; Hong, Sung-Kwon

2013-01-01

Highlights: •PFA films were functionalized by ion-beam induced surface graft polymerization. •Poly(sodium 4-styrenesulfonate) (PSS)-patterned PFA films were prepared. •Well-organized cell patterns were obtained on PSS-patterned PFA films. •This method is useful to fabricate bio-platforms for cell-based biodevices. -- Abstract: The surface functionalization of bio-inert fluoropolymer films through ion beam-induced surface graft polymerization was investigated to control the cellular behavior. The surface of poly(tetrafluoroethylene-co-perfluoropropl vinyl ether) (PFA) films was selectively activated by 150 keV H + ion implantation in the presence of a pattern mask and sodium 4-styrenesulfonate (SS) was then graft polymerized onto the implanted PFA films to form hydrophilic poly(sodium 4-styrenesulfonate) (PSS)-patterned PFA films. The surface of the resulting PSS-patterned PFA films was investigated in terms of the degree of graft polymerization, chemical structure, chemical composition, wettability, and morphology. The analytical results revealed that PSS was selectively grafted onto the implanted regions of the PFA films. Furthermore, in vitro cell culture on the PSS-patterned PFA films exhibited a preferential adhesion and growth of cells onto the PSS-grafted regions, resulting in well-organized 100 μm cell patterns

Multivariate pattern analysis reveals anatomical connectivity differences between the left and right mesial temporal lobe epilepsy

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Peng Fang

2015-01-01

Full Text Available Previous studies have demonstrated differences of clinical signs and functional brain network organizations between the left and right mesial temporal lobe epilepsy (mTLE, but the anatomical connectivity differences underlying functional variance between the left and right mTLE remain uncharacterized. We examined 43 (22 left, 21 right mTLE patients with hippocampal sclerosis and 39 healthy controls using diffusion tensor imaging. After the whole-brain anatomical networks were constructed for each subject, multivariate pattern analysis was applied to classify the left mTLE from the right mTLE and extract the anatomical connectivity differences between the left and right mTLE patients. The classification results reveal 93.0% accuracy for the left mTLE versus the right mTLE, 93.4% accuracy for the left mTLE versus controls and 90.0% accuracy for the right mTLE versus controls. Compared with the right mTLE, the left mTLE exhibited a different connectivity pattern in the cortical-limbic network and cerebellum. The majority of the most discriminating anatomical connections were located within or across the cortical-limbic network and cerebellum, thereby indicating that these disease-related anatomical network alterations may give rise to a portion of the complex of emotional and memory deficit between the left and right mTLE. Moreover, the orbitofrontal gyrus, cingulate cortex, hippocampus and parahippocampal gyrus, which exhibit high discriminative power in classification, may play critical roles in the pathophysiology of mTLE. The current study demonstrated that anatomical connectivity differences between the left mTLE and the right mTLE may have the potential to serve as a neuroimaging biomarker to guide personalized diagnosis of the left and right mTLE.

Correlations between human mobility and social interaction reveal general activity patterns

DEFF Research Database (Denmark)

Mollgaard, Anders; Jørgensen, Sune Lehmann; Mathiesen, Joachim

2017-01-01

A day in the life of a person involves a broad range of activities which are common across many people. Going beyond diurnal cycles, a central question is: to what extent do individuals act according to patterns shared across an entire population? Here we investigate the interplay between differe...... they be of social or of physical character....

Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data

Directory of Open Access Journals (Sweden)

Zhou Sun

2012-05-01

or filtered by AFST. Conclusions cDNA terminal pattern analysis, as implemented in the AFST software tool, can be utilized to reveal wet-lab errors such as restriction enzyme cutting abnormities and chimeric EST sequences, detect various data abnormalities embedded in existing Sanger EST datasets, improve the accuracy of identifying and extracting bona fide cDNA inserts from raw ESTs, and therefore greatly benefit downstream EST-based applications.

Concordant patterns of mtDNA and nuclear phylogeographic structure reveal Pleistocene vicariant event in the green crab Carcinus aestuarii across the Siculo-Tunisian Strait

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T. DELI

2016-07-01

Full Text Available This study focuses on the population genetic structure of the green crab Carcinus aestuarii along part of the African Mediterranean coast, with the main target to confirm genetic subdivision across the well documented genetic boundary of the Siculo-Tunisian Strait. For this purpose, the mitochondrial COI (cytochrome oxidase I gene and five polymorphic microsatellite loci were analysed in 144 and 120 specimens, respectively. Our results show the existence of two distinct haplogroups, separated by 16 mutational steps and revealed a non random distribution of the genetic variation along the African Mediterranean coast. Dating analyses, based on the use of different molecular clock models and rates, placed the divergence among both haplogroups at 1.91 Myr (95% HPD: 1.11–2.68 Myr to 0.69 Myr (95% HPD: 0.44–0.98 Myr. This range of divergence time estimation corresponds to the Early Pleistocene. The particular pattern of genetic divergence among Eastern and Western African Mediterranean populations of C. aestuarii, detected by 2-level AMOVA at the mitochondrial level, was consistent with that inferred from microsatellite analysis and suggests a vicariant event in C. aestuarii. Demographic reconstruction, inferred from mismatch distribution and BSP analyses, yielded different patterns of demographic history between both African Mediterranean groups. The distribution pattern of the two haplogroups across the African Mediterranean coast, along with results of Bayesian analysis of genetic structure revealing an intermediate geographic group between the two divergent groups of the African coast, support the hypothesis of a secondary contact between two historically isolated groups. Although this hypothetical contact zone, thought to be located near the Siculo-Tunisian Strait, still needs to be verified, the asymmetric gene flow from Western to Eastern African Mediterranean, as inferred by the results of a MIGRATE analysis, reinforces the previously

Rhythmic Patterns in Ragtime and Jazz

NARCIS (Netherlands)

Odekerken, Daphne; Volk, A.; Koops, Hendrik Vincent

2017-01-01

This paper presents a corpus-based study on rhythmic patterns in ragtime and jazz. Ragtime and jazz are related genres, but there are open questions on what specifies the two genres. Earlier studies revealed that variations of a particular syncopation pattern, referred to as 121, are among the most

Migration history of air-breathing fishes reveals Neogene atmospheric circulation patterns

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Böhme, M.

2004-05-01

The migration history of an air-breathing fish group (Channidae; snakehead fishes) is used for reconstructing Neogene Eurasian precipitation and atmospheric circulation patterns. The study shows that snakeheads are sensitive indicators of summer precipitation maxima in subtropical and temperate regions, and are present regularly if the wettest month exceeds 150 mm precipitation and 20 °C mean temperature. The analysis of 515 fossil freshwater fish deposits of the past 50 m.y. from Africa and Eurasia shows two continental-scale migration events from the snakeheads' center of origin in the south Himalayan region, events that can be related to changes in the Northern Hemisphere circulation pattern. The first migration, ca. 17.5 Ma, into western and central Eurasia may have been caused by a northward shift of the Intertropical Convergence Zone that brought western Eurasia under the influence of trade winds that produced a zonal and meridional precipitation gradient in Europe. During the second migration, between 8 and 4 Ma, into Africa and East Asia, snakeheads reached their present-day distribution. This migration could have been related to the intensification of the Asian monsoon that brought summer precipitation to their migratory pathways in East Africa Arabia and East Asia.

"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

Science.gov (United States)

Eveno, Emmanuelle; Collada, Carmen; Guevara, M Angeles; Léger, Valérie; Soto, Alvaro; Díaz, Luis; Léger, Patrick; González-Martínez, Santiago C; Cervera, M Teresa; Plomion, Christophe; Garnier-Géré, Pauline H

2008-02-01

The importance of natural selection for shaping adaptive trait differentiation among natural populations of allogamous tree species has long been recognized. Determining the molecular basis of local adaptation remains largely unresolved, and the respective roles of selection and demography in shaping population structure are actively debated. Using a multilocus scan that aims to detect outliers from simulated neutral expectations, we analyzed patterns of nucleotide diversity and genetic differentiation at 11 polymorphic candidate genes for drought stress tolerance in phenotypically contrasted Pinus pinaster Ait. populations across its geographical range. We compared 3 coalescent-based methods: 2 frequentist-like, including 1 approach specifically developed for biallelic single nucleotide polymorphisms (SNPs) here and 1 Bayesian. Five genes showed outlier patterns that were robust across methods at the haplotype level for 2 of them. Two genes presented higher F(ST) values than expected (PR-AGP4 and erd3), suggesting that they could have been affected by the action of diversifying selection among populations. In contrast, 3 genes presented lower F(ST) values than expected (dhn-1, dhn2, and lp3-1), which could represent signatures of homogenizing selection among populations. A smaller proportion of outliers were detected at the SNP level suggesting the potential functional significance of particular combinations of sites in drought-response candidate genes. The Bayesian method appeared robust to low sample sizes, flexible to assumptions regarding migration rates, and powerful for detecting selection at the haplotype level, but the frequentist-like method adapted to SNPs was more efficient for the identification of outlier SNPs showing low differentiation. Population-specific effects estimated in the Bayesian method also revealed populations with lower immigration rates, which could have led to favorable situations for local adaptation. Outlier patterns are discussed

Convection and magnetic field generation in the interior of planets (August Love Medal Lecture)

Science.gov (United States)

Christensen, U. R.

2009-04-01

Thermal convection driven by internal energy plays a role of paramount importance in planetary bodies. Its numerical modeling has been an essential tool for understanding how the internal engine of a planet works. Solid state convection in the silicate or icy mantles is the cause of endogenic tectonic activity, volcanism and, in the case of Earth, of plate motion. It also regulates the energy budget of the entire planet, including that of its core, and controls the presence or absence of a dynamo. The complex rheology of solid minerals, effects of phase transitions, and chemical heterogeneity are important issues in mantle convection. Examples discussed here are the convection pattern in Mars and the complex morphology of subducted slabs that are observed by seismic tomography in the Earth's mantle. Internally driven convection in the deep gas envelopes of the giant planets is possibly the cause for the strong jet streams at the surfaces that give rise to their banded appearance. Modeling of the magnetohydrodynamic flow in the conducting liquid core of the Earth has been remarkably successful in reproducing the primary properties of the geomagnetic field. As an examplefor attempts to explain also secondary properties, I will discuss dynamo models that account for the thermal coupling to the mantle. The understanding of the somewhat enigmatic magnetic fields of some other planets is less advanced. Here I will show that dynamos that operate below a stable conducting layer in the upper part of the planetary core can explain the unusual magnetic field properties of Mercury and Saturn. The question what determines the strength of a dynamo-generated magnetic field has been a matter of debate. From a large set of numerical dynamo simulations that cover a fair range of control parameters, we find a rule that relates magnetic field strength to the part of the energy flux that is thermodynamically available to be transformed into other forms of energy. This rules predicts

Characterization of WRKY transcription factors in Solanum lycopersicum reveals collinearity and their expression patterns under cold treatment.

Science.gov (United States)

Chen, Lin; Yang, Yang; Liu, Can; Zheng, Yanyan; Xu, Mingshuang; Wu, Na; Sheng, Jiping; Shen, Lin

2015-08-28

WRKY transcription factors play an important role in cold defense of plants. However, little information is available about the cold-responsive WRKYs in tomato (Solanum lycopersicum). In the present study, a complete characterization of this gene family was described. Eighty WRKY genes in the tomato genome were identified. Almost all WRKY genes contain putative stress-responsive cis-elements in their promoter regions. Segmental duplications contributed significantly to the expansion of the SlWRKY gene family. Transcriptional analysis revealed notable differential expression in tomato tissues and expression patterns under cold stress, which indicated wide functional divergence in this family. Ten WRKYs in tomato were strongly induced more than 2-fold during cold stress. These genes represented candidate genes for future functional analysis of WRKYs involved in the cold-related signal pathways. Our data provide valuable information about tomato WRKY proteins and form a foundation for future studies of these proteins, especially for those that play an important role in response to cold stress. Copyright © 2015 Elsevier Inc. All rights reserved.

Influence of large-scale zonal flows on the evolution of stellar and planetary magnetic fields

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Petitdemange, Ludovic; Schrinner, Martin; Dormy, Emmanuel; ENS Collaboration

2011-10-01

Zonal flows and magnetic field are present in various objects as accretion discs, stars and planets. Observations show a huge variety of stellar and planetary magnetic fields. Of particular interest is the understanding of cyclic field variations, as known from the sun. They are often explained by an important Ω-effect, i.e., by the stretching of field lines because of strong differential rotation. We computed the dynamo coefficients for an oscillatory dynamo model with the help of the test-field method. We argue that this model is of α2 Ω -type and here the Ω-effect alone is not responsible for its cyclic time variation. More general conditions which lead to dynamo waves in global direct numerical simulations are presented. Zonal flows driven by convection in planetary interiors may lead to secondary instabilities. We showed that a simple, modified version of the MagnetoRotational Instability, i.e., the MS-MRI can develop in planteray interiors. The weak shear yields an instability by its constructive interaction with the much larger rotation rate of planets. We present results from 3D simulations and show that 3D MS-MRI modes can generate wave pattern at the surface of the spherical numerical domain. Zonal flows and magnetic field are present in various objects as accretion discs, stars and planets. Observations show a huge variety of stellar and planetary magnetic fields. Of particular interest is the understanding of cyclic field variations, as known from the sun. They are often explained by an important Ω-effect, i.e., by the stretching of field lines because of strong differential rotation. We computed the dynamo coefficients for an oscillatory dynamo model with the help of the test-field method. We argue that this model is of α2 Ω -type and here the Ω-effect alone is not responsible for its cyclic time variation. More general conditions which lead to dynamo waves in global direct numerical simulations are presented. Zonal flows driven by convection

Revealing patterns of cultural transmission from frequency data: equilibrium and non-equilibrium assumptions

Science.gov (United States)

Crema, Enrico R.; Kandler, Anne; Shennan, Stephen

2016-12-01

A long tradition of cultural evolutionary studies has developed a rich repertoire of mathematical models of social learning. Early studies have laid the foundation of more recent endeavours to infer patterns of cultural transmission from observed frequencies of a variety of cultural data, from decorative motifs on potsherds to baby names and musical preferences. While this wide range of applications provides an opportunity for the development of generalisable analytical workflows, archaeological data present new questions and challenges that require further methodological and theoretical discussion. Here we examine the decorative motifs of Neolithic pottery from an archaeological assemblage in Western Germany, and argue that the widely used (and relatively undiscussed) assumption that observed frequencies are the result of a system in equilibrium conditions is unwarranted, and can lead to incorrect conclusions. We analyse our data with a simulation-based inferential framework that can overcome some of the intrinsic limitations in archaeological data, as well as handle both equilibrium conditions and instances where the mode of cultural transmission is time-variant. Results suggest that none of the models examined can produce the observed pattern under equilibrium conditions, and suggest. instead temporal shifts in the patterns of cultural transmission.

A bio-inspired spatial patterning circuit.

Science.gov (United States)

Chen, Kai-Yuan; Joe, Danial J; Shealy, James B; Land, Bruce R; Shen, Xiling

2014-01-01

Lateral Inhibition (LI) is a widely conserved patterning mechanism in biological systems across species. Distinct from better-known Turing patterns, LI depend on cell-cell contact rather than diffusion. We built an in silico genetic circuit model to analyze the dynamic properties of LI. The model revealed that LI amplifies differences between neighboring cells to push them into opposite states, hence forming stable 2-D patterns. Inspired by this insight, we designed and implemented an electronic circuit that recapitulates LI patterning dynamics. This biomimetic system serve as a physical model to elucidate the design principle of generating robust patterning through spatial feedback, regardless of the underlying devices being biological or electrical.

Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera.

Science.gov (United States)

Whittington, Emma; Forsythe, Desiree; Borziak, Kirill; Karr, Timothy L; Walters, James R; Dorus, Steve

2017-12-02

Rapid evolution is a hallmark of reproductive genetic systems and arises through the combined processes of sequence divergence, gene gain and loss, and changes in gene and protein expression. While studies aiming to disentangle the molecular ramifications of these processes are progressing, we still know little about the genetic basis of evolutionary transitions in reproductive systems. Here we conduct the first comparative analysis of sperm proteomes in Lepidoptera, a group that exhibits dichotomous spermatogenesis, in which males produce a functional fertilization-competent sperm (eupyrene) and an incompetent sperm morph lacking nuclear DNA (apyrene). Through the integrated application of evolutionary proteomics and genomics, we characterize the genomic patterns potentially associated with the origination and evolution of this unique spermatogenic process and assess the importance of genetic novelty in Lepidopteran sperm biology. Comparison of the newly characterized Monarch butterfly (Danaus plexippus) sperm proteome to those of the Carolina sphinx moth (Manduca sexta) and the fruit fly (Drosophila melanogaster) demonstrated conservation at the level of protein abundance and post-translational modification within Lepidoptera. In contrast, comparative genomic analyses across insects reveals significant divergence at two levels that differentiate the genetic architecture of sperm in Lepidoptera from other insects. First, a significant reduction in orthology among Monarch sperm genes relative to the remainder of the genome in non-Lepidopteran insect species was observed. Second, a substantial number of sperm proteins were found to be specific to Lepidoptera, in that they lack detectable homology to the genomes of more distantly related insects. Lastly, the functional importance of Lepidoptera specific sperm proteins is broadly supported by their increased abundance relative to proteins conserved across insects. Our results identify a burst of genetic novelty

Hidden Markov model analysis reveals the advantage of analytic eye movement patterns in face recognition across cultures.

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Chuk, Tim; Crookes, Kate; Hayward, William G; Chan, Antoni B; Hsiao, Janet H

2017-12-01

It remains controversial whether culture modulates eye movement behavior in face recognition. Inconsistent results have been reported regarding whether cultural differences in eye movement patterns exist, whether these differences affect recognition performance, and whether participants use similar eye movement patterns when viewing faces from different ethnicities. These inconsistencies may be due to substantial individual differences in eye movement patterns within a cultural group. Here we addressed this issue by conducting individual-level eye movement data analysis using hidden Markov models (HMMs). Each individual's eye movements were modeled with an HMM. We clustered the individual HMMs according to their similarities and discovered three common patterns in both Asian and Caucasian participants: holistic (looking mostly at the face center), left-eye-biased analytic (looking mostly at the two individual eyes in addition to the face center with a slight bias to the left eye), and right-eye-based analytic (looking mostly at the right eye in addition to the face center). The frequency of participants adopting the three patterns did not differ significantly between Asians and Caucasians, suggesting little modulation from culture. Significantly more participants (75%) showed similar eye movement patterns when viewing own- and other-race faces than different patterns. Most importantly, participants with left-eye-biased analytic patterns performed significantly better than those using either holistic or right-eye-biased analytic patterns. These results suggest that active retrieval of facial feature information through an analytic eye movement pattern may be optimal for face recognition regardless of culture. Copyright © 2017 Elsevier B.V. All rights reserved.

Whole exome sequencing in 342 congenital cardiac left sided lesion cases reveals extensive genetic heterogeneity and complex inheritance patterns

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Alexander H. Li

2017-10-01

Full Text Available Abstract Background Left-sided lesions (LSLs account for an important fraction of severe congenital cardiovascular malformations (CVMs. The genetic contributions to LSLs are complex, and the mutations that cause these malformations span several diverse biological signaling pathways: TGFB, NOTCH, SHH, and more. Here, we use whole exome sequence data generated in 342 LSL cases to identify likely damaging variants in putative candidate CVM genes. Methods Using a series of bioinformatics filters, we focused on genes harboring population-rare, putative loss-of-function (LOF, and predicted damaging variants in 1760 CVM candidate genes constructed a priori from the literature and model organism databases. Gene variants that were not observed in a comparably sequenced control dataset of 5492 samples without severe CVM were then subjected to targeted validation in cases and parents. Whole exome sequencing data from 4593 individuals referred for clinical sequencing were used to bolster evidence for the role of candidate genes in CVMs and LSLs. Results Our analyses revealed 28 candidate variants in 27 genes, including 17 genes not previously associated with a human CVM disorder, and revealed diverse patterns of inheritance among LOF carriers, including 9 confirmed de novo variants in both novel and newly described human CVM candidate genes (ACVR1, JARID2, NR2F2, PLRG1, SMURF1 as well as established syndromic CVM genes (KMT2D, NF1, TBX20, ZEB2. We also identified two genes (DNAH5, OFD1 with evidence of recessive and hemizygous inheritance patterns, respectively. Within our clinical cohort, we also observed heterozygous LOF variants in JARID2 and SMAD1 in individuals with cardiac phenotypes, and collectively, carriers of LOF variants in our candidate genes had a four times higher odds of having CVM (odds ratio = 4.0, 95% confidence interval 2.5–6.5. Conclusions Our analytical strategy highlights the utility of bioinformatic resources, including human

Origin of magnetic switching field distribution in bit patterned media based on pre-patterned substrates

OpenAIRE

Pfau , B; Günther , C.M.; Guehrs , E; Hauet , Thomas; Yang , H; Vinh , L.; Xu , X; Yaney , D; Rick , R; Eisebitt , S; Hellwig , O

2011-01-01

International audience; Using a combination of synchrotron radiation based magnetic imaging and high-resolution transmission electron microscopy we reveal systematic correlations between the magnetic switching field and the internal nanoscale structure of individual islands in bit patterned media fabricated by Co/Pd-multilayer deposition onto pre-patterned substrates. We find that misaligned grains at the island periphery are a common feature independent of the island switching field, while i...

Phylogenetic relationships among Synallaxini spinetails (Aves: Furnariidae) reveal a new biogeographic pattern across the Amazon and Paraná river basins.

Science.gov (United States)

Claramunt, Santiago

2014-09-01

Relationships among genera in the tribe Synallaxini have proved difficult to resolve. In this study, I investigate relationships among Synallaxis, Certhiaxis and Schoeniophylax using DNA sequences from the mitochondrion and three nuclear regions. I implemented novel primers and protocols for amplifying and sequencing autosomal and sex-linked introns in Furnariidae that resolved basal relationships in the Synallaxini with strong support. Synallaxis propinqua is sister to Schoeniophylax phryganophilus, and together they form a clade with Certhiaxis. The results are robust to analytical approaches when all genomic regions are analyzed jointly (parsimony, maximum likelihood, and species-tree analysis) and the same basal relationships are recovered by most genomic regions when analyzed separately. A sister relationship between S. propinqua, an Amazonian river island specialist, and S. phryganophilus, from the Paraná River basin region, reveals a new biogeographic pattern shared by at least other four pairs of taxa with similar distributions and ecologies. Estimates of divergence times for these five pairs span from the late Miocene to the Pleistocene. Identification of the historical events that produced this pattern is difficult and further advances will require additional studies of the taxa involved and a better understanding of the recent environmental history of South America. A new classification is proposed for the Synallaxini, including the description of a new genus for S. propinqua. Copyright © 2014 Elsevier Inc. All rights reserved.

Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses

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Mycobacterium bovis is an important animal pathogen worldwide that parasitizes wild and domesticated vertebrate livestock as well as humans. A comparison of the five M. bovis complete genomes from UK, South Korea, Brazil and USA revealed four novel large-scale structural variations of at least 2,000...

Analysis of image versus position, scale and direction reveals pattern texture anisotropy

Directory of Open Access Journals (Sweden)

Roland eLehoucq

2015-01-01

Full Text Available Pattern heterogeneities and anisotropies often carry significant physical information. We provide a toolbox which: (i cumulates analysis in terms of position, direction and scale; (ii is as general as possible; (iii is simple and fast to understand, implement, execute and exploit.It consists in dividing the image into analysis boxes at a chosen scale; in each box an ellipse (the inertia tensor is fitted to the signal and thus determines the direction in which the signal is more present. This tensor can be averaged in position and/or be used to study the dependence with scale. This choice is formally linked with Leray transforms and anisotropic wavelet analysis. Such protocol is intutively interpreted and consistent with what the eye detects: relevant scales, local variations in space, priviledged directions. It is fast and parallelizable.Its several variants are adaptable to the user's data and needs. It is useful to statistically characterize anisotropies of 2D or 3D patterns in which individual objects are not easily distinguished, with only minimal pre-processing of the raw image, and more generally applies to data in higher dimensions.It is less sensitive to edge effects, and thus better adapted for a multiscale analysis down to small scale boxes, than pair correlation function or Fourier transform.Easy to understand and implement,it complements more sophisticated methods such as Hough transform or diffusion tensor imaging.We use it on various fracture patterns (sea ice cover, thin sections of granite, granular materials, to pinpoint the maximal anisotropy scales. The results are robust to noise and to user choices. This toolbox could turn also useful for granular materials, hard condensed matter, geophysics, thin films, statistical mechanics, characterisation of networks, fluctuating amorphous systems, inhomogeneous and disordered systems, or medical imaging, among others.

On the Nocturnal Downward and Westward Equatorial Ionospheric Plasma Drifts During the 17 March 2015 Geomagnetic Storm

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Bagiya, Mala S.; Vichare, Geeta; Sinha, A. K.; Sripathi, S.

2018-02-01

During quiet period, the nocturnal equatorial ionospheric plasma drifts eastward in the zonal direction and downward in the vertical direction. This quiet time drift pattern could be understood through dynamo processes in the nighttime equatorial ionosphere. The present case study reports the nocturnal simultaneous occurrence of the vertically downward and zonally westward plasma drifts over the Indian latitudes during the geomagnetic storm of 17 March 2015. After 17:00 UT ( 22:10 local time), the vertical plasma drift became downward and coincided with the westward zonal drift, a rarely observed feature of low latitude plasma drifts. The vertical drift turned upward after 18:00 UT, while the zonal drift became eastward. We mainly emphasize here the distinct bipolar type variations of vertical and zonal plasma drifts observed around 18:00 UT. We explain the vertical plasma drift in terms of the competing effects between the storm time prompt penetration and disturbance dynamo electric fields. Whereas, the westward drift is attributed to the storm time local electrodynamical changes mainly through the disturbance dynamo field in addition to the vertical Pedersen current arising from the spatial (longitudinal) gradient of the field aligned Pedersen conductivity.

Prevalence and Antibiotic susceptibility pattern of Panton-Valentine ...

African Journals Online (AJOL)

Staphylococcal cassette chromosome mec typing by two standard multiplex PCR assay, revealed an uncharacterized resistance element. Overall antibiotic susceptibility pattern showed relatively high degree of susceptibility,however 1 isolate demostrated multidrug resistant pattern, 37(74.0%)resistant to only penicillin, 5 to ...

Transcriptome classification reveals molecular subtypes in psoriasis

Directory of Open Access Journals (Sweden)

Ainali Chrysanthi

2012-09-01

Full Text Available Abstract Background Psoriasis is an immune-mediated disease characterised by chronically elevated pro-inflammatory cytokine levels, leading to aberrant keratinocyte proliferation and differentiation. Although certain clinical phenotypes, such as plaque psoriasis, are well defined, it is currently unclear whether there are molecular subtypes that might impact on prognosis or treatment outcomes. Results We present a pipeline for patient stratification through a comprehensive analysis of gene expression in paired lesional and non-lesional psoriatic tissue samples, compared with controls, to establish differences in RNA expression patterns across all tissue types. Ensembles of decision tree predictors were employed to cluster psoriatic samples on the basis of gene expression patterns and reveal gene expression signatures that best discriminate molecular disease subtypes. This multi-stage procedure was applied to several published psoriasis studies and a comparison of gene expression patterns across datasets was performed. Conclusion Overall, classification of psoriasis gene expression patterns revealed distinct molecular sub-groups within the clinical phenotype of plaque psoriasis. Enrichment for TGFb and ErbB signaling pathways, noted in one of the two psoriasis subgroups, suggested that this group may be more amenable to therapies targeting these pathways. Our study highlights the potential biological relevance of using ensemble decision tree predictors to determine molecular disease subtypes, in what may initially appear to be a homogenous clinical group. The R code used in this paper is available upon request.

Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod-the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae).

Science.gov (United States)

Morse, Peter; Kjeldsen, Shannon R; Meekan, Mark G; Mccormick, Mark I; Finn, Julian K; Huffard, Christine L; Zenger, Kyall R

2018-02-01

The southern blue-ringed octopus, Hapalochlaena maculosa (Hoyle, 1883) lacks a planktonic dispersal phase, yet ranges across Australia's southern coastline. This species' brief and holobenthic life history suggests gene flow might be limited, leaving distant populations prone to strong genetic divergence. This study used 17,523 genome-wide SNP loci to investigate genetic structuring and local adaptation patterns of H. maculosa among eight sampling sites along its reported range. Within sites, interrelatedness was very high, consistent with the limited dispersal of this taxon. However, inbreeding coefficients were proportionally lower among sites where substructuring was not detected, suggesting H. maculosa might possess a mechanism for inbreeding avoidance. Genetic divergence was extremely high among all sites, with the greatest divergence observed between both ends of the distribution, Fremantle, WA, and Stanley, TAS. Genetic distances closely followed an isolation by geographic distance pattern. Outlier analyses revealed distinct selection signatures at all sites, with the strongest divergence reported between Fremantle and the other Western Australian sites. Phylogenetic reconstructions using the described sister taxon H. fasciata (Hoyle, 1886) further supported that the genetic divergence between distal H. maculosa sites in this study was equivalent to that of between established heterospecifics within this genus. However, it is advocated that taxonomic delineations within this species should be made with caution. These data indicate that H. maculosa forms a clinal species pattern across its geographic range, with gene flow present through allele sharing between adjacent populations. Morphological investigations are recommended for a robust resolution of the taxonomic identity and ecotype boundaries of this species.

Generative models versus underlying symmetries to explain biological pattern.

Science.gov (United States)

Frank, S A

2014-06-01

Mathematical models play an increasingly important role in the interpretation of biological experiments. Studies often present a model that generates the observations, connecting hypothesized process to an observed pattern. Such generative models confirm the plausibility of an explanation and make testable hypotheses for further experiments. However, studies rarely consider the broad family of alternative models that match the same observed pattern. The symmetries that define the broad class of matching models are in fact the only aspects of information truly revealed by observed pattern. Commonly observed patterns derive from simple underlying symmetries. This article illustrates the problem by showing the symmetry associated with the observed rate of increase in fitness in a constant environment. That underlying symmetry reveals how each particular generative model defines a single example within the broad class of matching models. Further progress on the relation between pattern and process requires deeper consideration of the underlying symmetries. © 2014 The Author. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

Science.gov (United States)

Palmblad, Magnus; van Eck, Nees Jan

2018-03-01

We have explored the collaborative network of the current American Society for Mass Spectrometry (ASMS) membership using bibliometric methods. The analysis shows that 4249 members are connected in a single, large, co-authorship graph, including the majority of the most published authors in the field of mass spectrometry. The map reveals topographical differences between university groups and national laboratories, and that the co-authors with the strongest links have long worked together at the same location. We have collected and summarized information on the geographical distribution of members, showing a high coverage of active researchers in North America and Western Europe. Looking at research fields, we could also identify a number of new or `hot' topics among ASMS members. Interactive versions of the maps are available on-line at https://goo.gl/UBNFMQ (collaborative network) and https://goo.gl/WV25vm (research topics). [Figure not available: see fulltext.

Patterns - "A crime solver".

Science.gov (United States)

Nagasupriya, A; Dhanapal, Raghu; Reena, K; Saraswathi, Tr; Ramachandran, Cr

2011-01-01

This study is intended to analyze the predominant pattern of lip and finger prints in males and females and to correlate lip print and finger print for gender identity. The study sample comprised of 200 students of Vishnu Dental College, Bhimavaram, Andhra Pradesh, 100 males and 100 females aged between 18 to 27 years. Brown/pink colored lip stick was applied on the lips and the subject was asked to spread it uniformly over the lips. Lip prints were traced in the normal rest position of the lips with the help of cellophane tape. The imprint of the left thumb was taken on a white chart sheet and visualized using magnifying lens. While three main types of finger prints are identified, the classification of lip prints is simplified into branched, reticular, and vertical types. Association between lip prints and finger prints was statistically tested using Chi-square test. This study showed that lip and finger patterns did not reveal statistically significant results within the gender. The correlation between lip and finger patterns for gender identification, was statistically significant. In males, branched type of lip pattern associated with arch, loop, and whorl type of finger pattern was most significant. In females, vertical lip pattern associated with arch finger pattern and reticular lip pattern associated with whorl finger patterns were most significant. We conclude that a correlative study between the lip print and finger print will be very useful in forensic science for gender identification.

An essay on sunspots and solar flares

International Nuclear Information System (INIS)

Akasofu, S.-I.

1984-01-01

The presently prevailing theories of sunspots and solar flares rely on the hypothetical presence of magnetic flux tubes beneath the photosphere and the two subsequent hypotheses, their emergence above the photosphere and explosive magnetic reconnection, converting magnetic energy carried by the flux tubes for solar flare energy. In this paper, attention is paid to the fact that there are large-scale magnetic fields which divide the photosphere into positive and negative (line-of-sight) polarity regions and that they are likely to be more fundamental than sunspot fields, as emphasized most recently by McIntosh. A new phenomenological model of the sunspot pair formation is then constructed by considering an amplification process of these large-scale fields near their boundaries by shear flows, including localized vortex motions. The amplification results from a dynamo process associated with such vortex flows and the associated convergence flow in the large-scale fields. This dynamo process generates also some of the familiar ''force-free'' fields or the ''sheared'' magnetic fields in which the magnetic field-aligned currents are essential. Upward field-aligned currents generated by the dynamo process are carried by downward streaming electrons which are expected to be accelerated by an electric potential structure; a similar structure is responsible for accelerating auroral electrons in the magnetosphere. Depending on the magnetic field configuration and the shear flows, the current-carrying electrons precipitate into different geometrical patterns, causing circular flares, umbral flares, two-ribbon flares, etc. Thus, it is suggested that ''low temperature flares'' are directly driven by the photospheric dynamo process. (author)

Four not six: Revealing culturally common facial expressions of emotion.

Science.gov (United States)

Jack, Rachael E; Sun, Wei; Delis, Ioannis; Garrod, Oliver G B; Schyns, Philippe G

2016-06-01

As a highly social species, humans generate complex facial expressions to communicate a diverse range of emotions. Since Darwin's work, identifying among these complex patterns which are common across cultures and which are culture-specific has remained a central question in psychology, anthropology, philosophy, and more recently machine vision and social robotics. Classic approaches to addressing this question typically tested the cross-cultural recognition of theoretically motivated facial expressions representing 6 emotions, and reported universality. Yet, variable recognition accuracy across cultures suggests a narrower cross-cultural communication supported by sets of simpler expressive patterns embedded in more complex facial expressions. We explore this hypothesis by modeling the facial expressions of over 60 emotions across 2 cultures, and segregating out the latent expressive patterns. Using a multidisciplinary approach, we first map the conceptual organization of a broad spectrum of emotion words by building semantic networks in 2 cultures. For each emotion word in each culture, we then model and validate its corresponding dynamic facial expression, producing over 60 culturally valid facial expression models. We then apply to the pooled models a multivariate data reduction technique, revealing 4 latent and culturally common facial expression patterns that each communicates specific combinations of valence, arousal, and dominance. We then reveal the face movements that accentuate each latent expressive pattern to create complex facial expressions. Our data questions the widely held view that 6 facial expression patterns are universal, instead suggesting 4 latent expressive patterns with direct implications for emotion communication, social psychology, cognitive neuroscience, and social robotics. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Tyrannosauroid integument reveals conflicting patterns of gigantism and feather evolution.

Science.gov (United States)

Bell, Phil R; Campione, Nicolás E; Persons, W Scott; Currie, Philip J; Larson, Peter L; Tanke, Darren H; Bakker, Robert T

2017-06-01

Recent evidence for feathers in theropods has led to speculations that the largest tyrannosaurids, including Tyrannosaurus rex , were extensively feathered. We describe fossil integument from Tyrannosaurus and other tyrannosaurids ( Albertosaurus, Daspletosaurus, Gorgosaurus and Tarbosaurus ), confirming that these large-bodied forms possessed scaly, reptilian-like skin. Body size evolution in tyrannosauroids reveals two independent occurrences of gigantism; specifically, the large sizes in Yutyrannus and tyrannosaurids were independently derived. These new findings demonstrate that extensive feather coverings observed in some early tyrannosauroids were lost by the Albian, basal to Tyrannosauridae. This loss is unrelated to palaeoclimate but possibly tied to the evolution of gigantism, although other mechanisms exist. © 2017 The Author(s).

Development of Spatial Distribution Patterns by Biofilm Cells

DEFF Research Database (Denmark)

Haagensen, Janus Anders Juul; Hansen, Susse Kirkelund; Bak Christensen, Bjarke

2015-01-01

-pattern by Acinetobacter sp. C6. Ecological spatial pattern analyses revealed that the microcolonies were not entirely randomly distributed, and instead arranged in a uniform pattern. Detailed time-lapse confocal microscopy at the single cell level demonstrated that the spatial pattern was the result of an intriguing self......-organization: Small multicellular clusters moved along the surface to fuse with one another to form microcolonies. This active distribution capability was dependent on environmental factors (carbon source, oxygen) and historical contingency (formation of phenotypic variants). The findings of this study are discussed...

Highlighting nonlinear patterns in population genetics datasets

KAUST Repository

Alanis Lobato, Gregorio

2015-01-30

Detecting structure in population genetics and case-control studies is important, as it exposes phenomena such as ecoclines, admixture and stratification. Principal Component Analysis (PCA) is a linear dimension-reduction technique commonly used for this purpose, but it struggles to reveal complex, nonlinear data patterns. In this paper we introduce non-centred Minimum Curvilinear Embedding (ncMCE), a nonlinear method to overcome this problem. Our analyses show that ncMCE can separate individuals into ethnic groups in cases in which PCA fails to reveal any clear structure. This increased discrimination power arises from ncMCE\\'s ability to better capture the phylogenetic signal in the samples, whereas PCA better reflects their geographic relation. We also demonstrate how ncMCE can discover interesting patterns, even when the data has been poorly pre-processed. The juxtaposition of PCA and ncMCE visualisations provides a new standard of analysis with utility for discovering and validating significant linear/nonlinear complementary patterns in genetic data.

Highlighting nonlinear patterns in population genetics datasets

KAUST Repository

Alanis Lobato, Gregorio; Cannistraci, Carlo Vittorio; Eriksson, Anders; Manica, Andrea; Ravasi, Timothy

2015-01-01

Detecting structure in population genetics and case-control studies is important, as it exposes phenomena such as ecoclines, admixture and stratification. Principal Component Analysis (PCA) is a linear dimension-reduction technique commonly used for this purpose, but it struggles to reveal complex, nonlinear data patterns. In this paper we introduce non-centred Minimum Curvilinear Embedding (ncMCE), a nonlinear method to overcome this problem. Our analyses show that ncMCE can separate individuals into ethnic groups in cases in which PCA fails to reveal any clear structure. This increased discrimination power arises from ncMCE's ability to better capture the phylogenetic signal in the samples, whereas PCA better reflects their geographic relation. We also demonstrate how ncMCE can discover interesting patterns, even when the data has been poorly pre-processed. The juxtaposition of PCA and ncMCE visualisations provides a new standard of analysis with utility for discovering and validating significant linear/nonlinear complementary patterns in genetic data.

Patterns of Physician-Patient Communication Associated with Patient Satisfaction.

Science.gov (United States)

Williams, M. Lee; Clampitt, Phillip G.

Using data drawn from ten initial physician/patient interviews, an original category system was employed to analyze patterns of physician/patient communication. Static analysis, interaction analysis, and Markov chain analysis were used to discover the underlying communication patterns associated with patient satisfaction. Results revealed that…

Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes

Science.gov (United States)

Fournier, David; Redl, Stefan; Best, Gerrit; Borsos, Máté; Tiwari, Vijay K.; Tachibana-Konwalski, Kikuë; Ketting, René F.; Parekh, Sapun H.; Cremer, Christoph; Birk, Udo J.

2015-01-01

During meiosis, homologous chromosomes associate to form the synaptonemal complex (SC), a structure essential for fertility. Information about the epigenetic features of chromatin within this structure at the level of superresolution microscopy is largely lacking. We combined single-molecule localization microscopy (SMLM) with quantitative analytical methods to describe the epigenetic landscape of meiotic chromosomes at the pachytene stage in mouse oocytes. DNA is found to be nonrandomly distributed along the length of the SC in condensed clusters. Periodic clusters of repressive chromatin [trimethylation of histone H3 at lysine (Lys) 27 (H3K27me3)] are found at 500-nm intervals along the SC, whereas one of the ends of the SC displays a large and dense cluster of centromeric histone mark [trimethylation of histone H3 at Lys 9 (H3K9me3)]. Chromatin associated with active transcription [trimethylation of histone H3 at Lys 4 (H3K4me3)] is arranged in a radial hair-like loop pattern emerging laterally from the SC. These loops seem to be punctuated with small clusters of H3K4me3 with an average spread larger than their periodicity. Our findings indicate that the nanoscale structure of the pachytene chromosomes is constrained by periodic patterns of chromatin marks, whose function in recombination and higher order genome organization is yet to be elucidated. PMID:26561583

Saturn's Internal Magnetic Field Revealed by Cassini Grand Finale

Science.gov (United States)

Cao, H.; Dougherty, M. K.; Khurana, K. K.; Hunt, G. J.; Provan, G.; Kellock, S.; Burton, M. E.; Burk, T. A.

2017-12-01

Saturn's internal magnetic field has been puzzling since the first in-situ measurements during the Pioneer 11 Saturn flyby. Cassini magnetometer measurements prior to the Grand Finale phase established 1) the highly axisymmetric nature of Saturn's internal magnetic field with a dipole tilt smaller than 0.06 degrees, 2) at least an order of magnitude slower secular variation rate compared to that of the current geomagnetic field, and 3) expulsion of magnetic fluxes from the equatorial region towards high latitude. The highly axisymmetric nature of Saturn's intrinsic magnetic field not only challenges dynamo theory but also makes an accurate determination of the interior rotation rate of Saturn extremely difficult. The Cassini spacecraft entered the Grand Finale phase in April 2017, during which time the spacecraft dived through the gap between Saturn's atmosphere and the inner edge of the D-ring 22 times before descending into the deep atmosphere of Saturn. The unprecedented proximity to Saturn (reaching 2500 km above the cloud deck) and the highly inclined nature of the Grand Finale orbits provided an ideal opportunity to decode Saturn's internal magnetic field. The fluxgate magnetometer onboard Cassini made precise vector measurements during the Grand Finale phase. Magnetic signals from the interior of the planet, the magnetospheric ring current, the high-latitude field-aligned current (FAC) modulated by the 10.7 hour planetary period oscillation, and low-latitude FACs were observed during the Grand Finale phase. Here we report the magnetometer measurements during the Cassini Grand Finale phase, new features of Saturn's internal magnetic field revealed by these measurements (e.g., the high degree magnetic moments of Saturn, the level of axisymmetry beyond dipole), and implications for the deep interior of Saturn.

Thermodynamics of complexity and pattern manipulation

Science.gov (United States)

Garner, Andrew J. P.; Thompson, Jayne; Vedral, Vlatko; Gu, Mile

2017-04-01

Many organisms capitalize on their ability to predict the environment to maximize available free energy and reinvest this energy to create new complex structures. This functionality relies on the manipulation of patterns—temporally ordered sequences of data. Here, we propose a framework to describe pattern manipulators—devices that convert thermodynamic work to patterns or vice versa—and use them to build a "pattern engine" that facilitates a thermodynamic cycle of pattern creation and consumption. We show that the least heat dissipation is achieved by the provably simplest devices, the ones that exhibit desired operational behavior while maintaining the least internal memory. We derive the ultimate limits of this heat dissipation and show that it is generally nonzero and connected with the pattern's intrinsic crypticity—a complexity theoretic quantity that captures the puzzling difference between the amount of information the pattern's past behavior reveals about its future and the amount one needs to communicate about this past to optimally predict the future.

Pattern Analyses Reveal Separate Experience-Based Fear Memories in the Human Right Amygdala.

Science.gov (United States)

Braem, Senne; De Houwer, Jan; Demanet, Jelle; Yuen, Kenneth S L; Kalisch, Raffael; Brass, Marcel

2017-08-23

Learning fear via the experience of contingencies between a conditioned stimulus (CS) and an aversive unconditioned stimulus (US) is often assumed to be fundamentally different from learning fear via instructions. An open question is whether fear-related brain areas respond differently to experienced CS-US contingencies than to merely instructed CS-US contingencies. Here, we contrasted two experimental conditions where subjects were instructed to expect the same CS-US contingencies while only one condition was characterized by prior experience with the CS-US contingency. Using multivoxel pattern analysis of fMRI data, we found CS-related neural activation patterns in the right amygdala (but not in other fear-related regions) that dissociated between whether a CS-US contingency had been instructed and experienced versus merely instructed. A second experiment further corroborated this finding by showing a category-independent neural response to instructed and experienced, but not merely instructed, CS presentations in the human right amygdala. Together, these findings are in line with previous studies showing that verbal fear instructions have a strong impact on both brain and behavior. However, even in the face of fear instructions, the human right amygdala still shows a separable neural pattern response to experience-based fear contingencies. SIGNIFICANCE STATEMENT In our study, we addressed a fundamental problem of the science of human fear learning and memory, namely whether fear learning via experience in humans relies on a neural pathway that can be separated from fear learning via verbal information. Using two new procedures and recent advances in the analysis of brain imaging data, we localized purely experience-based fear processing and memory in the right amygdala, thereby making a direct link between human and animal research. Copyright © 2017 the authors 0270-6474/17/378116-15$15.00/0.

Separating macroecological pattern and process: comparing ecological, economic, and geological systems.

Directory of Open Access Journals (Sweden)

Benjamin Blonder

Full Text Available Theories of biodiversity rest on several macroecological patterns describing the relationship between species abundance and diversity. A central problem is that all theories make similar predictions for these patterns despite disparate assumptions. A troubling implication is that these patterns may not reflect anything unique about organizational principles of biology or the functioning of ecological systems. To test this, we analyze five datasets from ecological, economic, and geological systems that describe the distribution of objects across categories in the United States. At the level of functional form ('first-order effects', these patterns are not unique to ecological systems, indicating they may reveal little about biological process. However, we show that mechanism can be better revealed in the scale-dependency of first-order patterns ('second-order effects'. These results provide a roadmap for biodiversity theory to move beyond traditional patterns, and also suggest ways in which macroecological theory can constrain the dynamics of economic systems.

Separating macroecological pattern and process: comparing ecological, economic, and geological systems.

Science.gov (United States)

Blonder, Benjamin; Sloat, Lindsey; Enquist, Brian J; McGill, Brian

2014-01-01

Theories of biodiversity rest on several macroecological patterns describing the relationship between species abundance and diversity. A central problem is that all theories make similar predictions for these patterns despite disparate assumptions. A troubling implication is that these patterns may not reflect anything unique about organizational principles of biology or the functioning of ecological systems. To test this, we analyze five datasets from ecological, economic, and geological systems that describe the distribution of objects across categories in the United States. At the level of functional form ('first-order effects'), these patterns are not unique to ecological systems, indicating they may reveal little about biological process. However, we show that mechanism can be better revealed in the scale-dependency of first-order patterns ('second-order effects'). These results provide a roadmap for biodiversity theory to move beyond traditional patterns, and also suggest ways in which macroecological theory can constrain the dynamics of economic systems.

Use-Wear Patterns on Wild Macaque Stone Tools Reveal Their Behavioural History

OpenAIRE

Haslam, Michael; Gumert, Michael D.; Biro, Dora; Carvalho, Susana; Malaivijitnond, Suchinda

2013-01-01

Burmese long-tailed macaques (Macaca fascicularis aurea) are one of a limited number of wild animal species to use stone tools, with their tool use focused on pounding shelled marine invertebrates foraged from intertidal habitats. These monkeys exhibit two main styles of tool use: axe hammering of oysters, and pound hammering of unattached encased foods. In this study, we examined macroscopic use-wear patterns on a sample of 60 wild macaque stone tools from Piak Nam Yai Island, Thailand, that...

Big data analyses reveal patterns and drivers of the movements of southern elephant seals

KAUST Repository

Rodrí guez, J. P.; Ferná ndez-Gracia, Juan; Thums, Michele; Hindell, Mark A.; Sequeira, Ana M. M.; Meekan, Mark G.; Costa, Daniel P.; Guinet, Christophe; Harcourt, R.; McMahon, Clive R.; Muelbert, Monica; Duarte, Carlos M.; Eguí luz, V. M.

2017-01-01

The growing number of large databases of animal tracking provides an opportunity for analyses of movement patterns at the scales of populations and even species. We used analytical approaches, developed to cope with

Big data analyses reveal patterns and drivers of the movements of southern elephant seals

KAUST Repository

Rodríguez, Jorge P.

2017-03-02

The growing number of large databases of animal tracking provides an opportunity for analyses of movement patterns at the scales of populations and even species. We used analytical approaches, developed to cope with

Integrated Analysis of Alzheimer's Disease and Schizophrenia Dataset Revealed Different Expression Pattern in Learning and Memory.

Science.gov (United States)

Li, Wen-Xing; Dai, Shao-Xing; Liu, Jia-Qian; Wang, Qian; Li, Gong-Hua; Huang, Jing-Fei

2016-01-01

Alzheimer's disease (AD) and schizophrenia (SZ) are both accompanied by impaired learning and memory functions. This study aims to explore the expression profiles of learning or memory genes between AD and SZ. We downloaded 10 AD and 10 SZ datasets from GEO-NCBI for integrated analysis. These datasets were processed using RMA algorithm and a global renormalization for all studies. Then Empirical Bayes algorithm was used to find the differentially expressed genes between patients and controls. The results showed that most of the differentially expressed genes were related to AD whereas the gene expression profile was little affected in the SZ. Furthermore, in the aspects of the number of differentially expressed genes, the fold change and the brain region, there was a great difference in the expression of learning or memory related genes between AD and SZ. In AD, the CALB1, GABRA5, and TAC1 were significantly downregulated in whole brain, frontal lobe, temporal lobe, and hippocampus. However, in SZ, only two genes CRHBP and CX3CR1 were downregulated in hippocampus, and other brain regions were not affected. The effect of these genes on learning or memory impairment has been widely studied. It was suggested that these genes may play a crucial role in AD or SZ pathogenesis. The different gene expression patterns between AD and SZ on learning and memory functions in different brain regions revealed in our study may help to understand the different mechanism between two diseases.

Connecting the dots: Illusory pattern perception predicts belief in conspiracies and the supernatural.

Science.gov (United States)

van Prooijen, Jan-Willem; Douglas, Karen M; De Inocencio, Clara

2018-04-01

A common assumption is that belief in conspiracy theories and supernatural phenomena are grounded in illusory pattern perception. In the present research we systematically tested this assumption. Study 1 revealed that such irrational beliefs are related to perceiving patterns in randomly generated coin toss outcomes. In Study 2, pattern search instructions exerted an indirect effect on irrational beliefs through pattern perception. Study 3 revealed that perceiving patterns in chaotic but not in structured paintings predicted irrational beliefs. In Study 4, we found that agreement with texts supporting paranormal phenomena or conspiracy theories predicted pattern perception. In Study 5, we manipulated belief in a specific conspiracy theory. This manipulation influenced the extent to which people perceive patterns in world events, which in turn predicted unrelated irrational beliefs. We conclude that illusory pattern perception is a central cognitive mechanism accounting for conspiracy theories and supernatural beliefs.

Connecting the dots: Illusory pattern perception predicts belief in conspiracies and the supernatural

Science.gov (United States)

Douglas, Karen M.; De Inocencio, Clara

2017-01-01

Abstract A common assumption is that belief in conspiracy theories and supernatural phenomena are grounded in illusory pattern perception. In the present research we systematically tested this assumption. Study 1 revealed that such irrational beliefs are related to perceiving patterns in randomly generated coin toss outcomes. In Study 2, pattern search instructions exerted an indirect effect on irrational beliefs through pattern perception. Study 3 revealed that perceiving patterns in chaotic but not in structured paintings predicted irrational beliefs. In Study 4, we found that agreement with texts supporting paranormal phenomena or conspiracy theories predicted pattern perception. In Study 5, we manipulated belief in a specific conspiracy theory. This manipulation influenced the extent to which people perceive patterns in world events, which in turn predicted unrelated irrational beliefs. We conclude that illusory pattern perception is a central cognitive mechanism accounting for conspiracy theories and supernatural beliefs. PMID:29695889

Multi-spatial analysis of aeolian dune-field patterns

Science.gov (United States)

Ewing, Ryan C.; McDonald, George D.; Hayes, Alex G.

2015-07-01

Aeolian dune-fields are composed of different spatial scales of bedform patterns that respond to changes in environmental boundary conditions over a wide range of time scales. This study examines how variations in spatial scales of dune and ripple patterns found within dune fields are used in environmental reconstructions on Earth, Mars and Titan. Within a single bedform type, different spatial scales of bedforms emerge as a pattern evolves from an initial state into a well-organized pattern, such as with the transition from protodunes to dunes. Additionally, different types of bedforms, such as ripples, coarse-grained ripples and dunes, coexist at different spatial scales within a dune-field. Analysis of dune-field patterns at the intersection of different scales and types of bedforms at different stages of development provides a more comprehensive record of sediment supply and wind regime than analysis of a single scale and type of bedform. Interpretations of environmental conditions from any scale of bedform, however, are limited to environmental signals associated with the response time of that bedform. Large-scale dune-field patterns integrate signals over long-term climate cycles and reveal little about short-term variations in wind or sediment supply. Wind ripples respond instantly to changing conditions, but reveal little about longer-term variations in wind or sediment supply. Recognizing the response time scales across different spatial scales of bedforms maximizes environmental interpretations from dune-field patterns.

Latitudinal migration of sunspots based on the ESAI database

Science.gov (United States)

Zhang, Juan; Li, Fu-Yu; Feng, Wen

2018-01-01

The latitudinal migration of sunspots toward the equator, which implies there is propagation of the toroidal magnetic flux wave at the base of the solar convection zone, is one of the crucial observational bases for the solar dynamo to generate a magnetic field by shearing of the pre-existing poloidal magnetic field through differential rotation. The Extended time series of Solar Activity Indices (ESAI) elongated the Greenwich observation record of sunspots by several decades in the past. In this study, ESAI’s yearly mean latitude of sunspots in the northern and southern hemispheres during the years 1854 to 1985 is utilized to statistically test whether hemispherical latitudinal migration of sunspots in a solar cycle is linear or nonlinear. It is found that a quadratic function is statistically significantly better at describing hemispherical latitudinal migration of sunspots in a solar cycle than a linear function. In addition, the latitude migration velocity of sunspots in a solar cycle decreases as the cycle progresses, providing a particular constraint for solar dynamo models. Indeed, the butterfly wing pattern with a faster latitudinal migration rate should present stronger solar activity with a shorter cycle period, and it is located at higher latitudinal position, giving evidence to support the Babcock-Leighton dynamo mechanism.

Does the planetary dynamo go cycling on? Re-examining the evidence for cycles in magnetic reversal rate

Science.gov (United States)

Melott, Adrian L.; Pivarunas, Anthony; Meert, Joseph G.; Lieberman, Bruce S.

2018-01-01

The record of reversals of the geomagnetic field has played an integral role in the development of plate tectonic theory. Statistical analyses of the reversal record are aimed at detailing patterns and linking those patterns to core-mantle processes. The geomagnetic polarity timescale is a dynamic record and new paleomagnetic and geochronologic data provide additional detail. In this paper, we examine the periodicity revealed in the reversal record back to 375 million years ago (Ma) using Fourier analysis. Four significant peaks were found in the reversal power spectra within the 16-40-million-year range (Myr). Plotting the function constructed from the sum of the frequencies of the proximal peaks yield a transient 26 Myr periodicity, suggesting chaotic motion with a periodic attractor. The possible 16 Myr periodicity, a previously recognized result, may be correlated with `pulsation' of mantle plumes and perhaps; more tentatively, with core-mantle dynamics originating near the large low shear velocity layers in the Pacific and Africa. Planetary magnetic fields shield against charged particles, which can give rise to radiation at the surface and ionize the atmosphere, which is a loss mechanism particularly relevant to M stars. Understanding the origin and development of planetary magnetic fields can shed light on the habitable zone.

Age-Related Changes in Locomotor Performance Reveal a Similar Pattern for Caenorhabditis elegans, Mus domesticus, Canis familiaris, Equus caballus, and Homo sapiens.

Science.gov (United States)

Marck, Adrien; Berthelot, Geoffroy; Foulonneau, Vincent; Marc, Andy; Antero-Jacquemin, Juliana; Noirez, Philippe; Bronikowski, Anne M; Morgan, Theodore J; Garland, Theodore; Carter, Patrick A; Hersen, Pascal; Di Meglio, Jean-Marc; Toussaint, Jean-François

2017-04-01

Locomotion is one of the major physiological functions for most animals. Previous studies have described aging mechanisms linked to locomotor performance among different species. However, the precise dynamics of these age-related changes, and their interactions with development and senescence, are largely unknown. Here, we use the same conceptual framework to describe locomotor performances in Caenorhabditis elegans, Mus domesticus, Canis familiaris, Equus caballus, and Homo sapiens. We show that locomotion is a consistent biomarker of age-related changes, with an asymmetrical pattern throughout life, regardless of the type of effort or its duration. However, there is variation (i) among species for the same mode of locomotion, (ii) within species for different modes of locomotion, and (iii) among individuals of the same species for the same mode of locomotion. Age-related patterns are modulated by genetic (such as selective breeding) as well as environmental conditions (such as temperature). However, in all cases, the intersection of the rising developmental phase and the declining senescent phase reveals neither a sharp transition nor a plateau, but a smooth transition, emphasizing a crucial moment: the age at peak performance. This transition may define a specific target for future investigations on the dynamics of such biological interactions. © The Author 2016. Published by Oxford University Press on behalf of The Gerontological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Processing-Dependent and Clonal Contamination Patterns of Listeria monocytogenes in the Cured Ham Food Chain Revealed by Genetic Analysis.

Science.gov (United States)

Morganti, Marina; Scaltriti, Erika; Cozzolino, Paolo; Bolzoni, Luca; Casadei, Gabriele; Pierantoni, Marco; Foni, Emanuela; Pongolini, Stefano

2016-02-01

The quantitative and qualitative patterns of environmental contamination by Listeria monocytogenes were investigated in the production chain of dry-cured Parma ham. Standard arrays of surfaces were sampled in processing facilities during a single visit per plant in the three compartments of the food chain, i.e., ham production (19 plants) and postproduction, which was divided into deboning (43 plants) and slicing (25 plants) steps. The numbers of sampled surfaces were 384 in ham production, with 25 positive for L. monocytogenes, and 1,084 in postproduction, with 83 positives. Statistical analysis of the prevalence of contaminated surfaces showed that in ham production, contamination was higher at the beginning of processing and declined significantly toward the end, while in postproduction, prevalence rose toward the end of processing. Prevalence was higher in the deboning facilities than in slicing facilities and was dependent on the type of surface (floor/drainage > clothing > equipment). The qualitative pattern of contamination was investigated through an analysis of the survey isolates and a set of isolates derived from routine monitoring, including longitudinal isolations. Pulsed-field gel electrophoresis (PFGE) and whole-genome single-nucleotide polymorphism (SNP) analysis revealed a remarkable clonality of L. monocytogenes within plants, with the detection of 16 plant-specific clones out of 17 establishments with multiple isolates. Repeated detections of clonal isolates >6 months apart were also observed. Six was the maximum number of between-isolate differences in core SNPs observed within these clones. Based on the same six-SNP threshold, three clusters of clonal isolates, shared by six establishments, were also identified. The spread of L. monocytogenes within and between plants, as indicated by its clonal behavior, is a matter of concern for the hygienic management of establishments. Copyright © 2016, American Society for Microbiology. All Rights

Deciphering principles of morphogenesis from temporal and spatial patterns on the integument

Science.gov (United States)

Li, Ang; Lai, Yung-Chih; Figueroa, Seth; Yang, Tian; Widelitz, Randall B; Kobielak, Krzysztof; Nie, Qing; Chuong, Cheng Ming

2015-01-01

How tissue patterns form in development and regeneration is a fundamental issue remaining to be fully understood. The integument often forms repetitive units in space (periodic patterning) and time (cyclic renewal), such as feathers and hairs. Integument patterns are visible and experimentally manipulatable, helping us reveal pattern formative processes. Variability is seen in regional phenotypic specificities and temporal cycling at different physiological stages. Here we show some cellular / molecular bases revealed by analyzing integument patterns. 1) Localized cellular activity (proliferation, rearrangement, apoptosis, differentiation) transforms prototypic organ primordia into specific shapes. Combinatorial positioning of different localized activity zones generates diverse and complex organ forms. 2) Competitive equilibrium between activators and inhibitors regulates stem cells through cyclic quiescence and activation. Dynamic interactions between stem cells and their adjacent niche regulate regenerative behavior, modulated by multi-layers of macro-environmental factors (dermis, body hormone status and external environment). Genomics studies may reveal how positional information of localized cellular activity is stored. In vivo skin imaging and lineage tracing unveils new insights into stem cell plasticity. Principles of self-assembly obtained from the integumentary organ model can be applied to help restore damaged patterns during regenerative wound healing and for tissue engineering to rebuild tissues. PMID:25858668

A recovery principle provides insight into auxin pattern control in the Arabidopsis root

Science.gov (United States)

Moore, Simon; Liu, Junli; Zhang, Xiaoxian; Lindsey, Keith

2017-01-01

Regulated auxin patterning provides a key mechanism for controlling root growth and development. We have developed a data-driven mechanistic model using realistic root geometry and formulated a principle to theoretically investigate quantitative auxin pattern recovery following auxin transport perturbation. This principle reveals that auxin patterning is potentially controlled by multiple combinations of interlinked levels and localisation of influx and efflux carriers. We demonstrate that (1) when efflux carriers maintain polarity but change levels, maintaining the same auxin pattern requires non-uniform and polar distribution of influx carriers; (2) the emergence of the same auxin pattern, from different levels of influx carriers with the same nonpolar localisation, requires simultaneous modulation of efflux carrier level and polarity; and (3) multiple patterns of influx and efflux carriers for maintaining an auxin pattern do not have spatially proportional correlation. This reveals that auxin pattern formation requires coordination between influx and efflux carriers. We further show that the model makes various predictions that can be experimentally validated. PMID:28220889

Does pattern-welding make Anglo-Saxon swords stronger?

DEFF Research Database (Denmark)

Birch, Thomas

2013-01-01

to assess whether the technique affects mechanical properties, this experimental study compared pattern-welded and plain forged blanks in a series of material tests. Specimens were subject to tensile, Charpy and Vickers diamond hardness testing. This was to investigate the relative strength, ductility......The purpose of pattern-welding, used for the construction of some Anglo-Saxon swords, has yet to be fully resolved. One suggestion is that the technique enhanced the mechanical properties of a blade. Another explanation is that pattern-welding created a desired aesthetic appearance. In order...... and toughness of pattern-welding. The results were inconclusive, however the study revealed that the fracture performance of pattern-welding may relate to its use....

Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends.

Directory of Open Access Journals (Sweden)

Julia H Chariker

Full Text Available G-quadruplex structures (G4 are found throughout the human genome and are known to play a regulatory role in a variety of molecular processes. Structurally, they have many configurations and can form from one or more DNA strands. At the gene level, they regulate gene expression and protein synthesis. In this paper, chromosomal-level patterns of distribution are analyzed on the human genome to identify high-level distribution patterns potentially related to global functional processes. Here we show unique high density banding patterns on individual chromosomes that are highly correlated, appearing in a mirror pattern, across forward and reverse DNA strands. The highest density of G4 sequences occurs within four megabases of one end of most chromosomes and contains G4 motifs that bind with zinc finger proteins. These findings suggest that G4 may play a role in global chromosomal processes such as those found in meiosis.

Magnetohydrodynamics of accretion disks

International Nuclear Information System (INIS)

Torkelsson, U.

1994-04-01

The thesis consists of an introduction and summary, and five research papers. The introduction and summary provides the background in accretion disk physics and magnetohydrodynamics. The research papers describe numerical studies of magnetohydrodynamical processes in accretion disks. Paper 1 is a one-dimensional study of the effect of magnetic buoyancy on a flux tube in an accretion disk. The stabilizing influence of an accretion disk corona on the flux tube is demonstrated. Paper 2-4 present numerical simulations of mean-field dynamos in accretion disks. Paper 11 verifies the correctness of the numerical code by comparing linear models to previous work by other groups. The results are also extended to somewhat modified disk models. A transition from an oscillatory mode of negative parity for thick disks to a steady mode of even parity for thin disks is found. Preliminary results for nonlinear dynamos at very high dynamo numbers are also presented. Paper 3 describes the bifurcation behaviour of the nonlinear dynamos. For positive dynamo numbers it is found that the initial steady solution is replaced by an oscillatory solution of odd parity. For negative dynamo numbers the solution becomes chaotic at sufficiently high dynamo numbers. Paper 4 continues the studies of nonlinear dynamos, and it is demonstrated that a chaotic solution appears even for positive dynamo numbers, but that it returns to a steady solution of mixed parity at very high dynamo numbers. Paper 5 describes a first attempt at simulating the small-scale turbulence of an accretion disk in three dimensions. There is only find cases of decaying turbulence, but this is rather due to limitations of the simulations than that turbulence is really absent in accretion disks

MRI enhancing patterns of non-meningioma meningeal lesions

International Nuclear Information System (INIS)

Tao Xiaofeng; Ding Juan; Xiao Xiangsheng; Shi Zengru; Yu Hong; Gu Qian

2004-01-01

Objective: To analyze the MRI appearances of meningeal diseases and to study MRI diagnostic value of enhancing patterns in different meningeal processes. Methods: Sixty-one patients with integrated clinical data, including 27 infectious meningitis, 4 inflammatory meningitis (2 eosinophilic granuloma, 1 Wegener granuloma, and 1 unknown etiological factor), 12 meningeal metastasis, 2 meningeal lymphoma, 8 cerebrovascular disease, and 8 postoperative changes, were reviewed retrospectively. All patients were examined on MRI before and after contrast administration. Results: (1) MR plain scan: positive findings of plain scan were revealed in only 3 cases, including 1 linear meningeal thickening pattern and 2 nodular pattern. (2) MR enhancement: All cases showed 3 kinds of enhancing patterns: 19 dural-arachnoid pattern, 32 pia-arachnoid pattern, and 10 total meninges pattern, respectively. Conclusion: Different meningeal diseases have different MR imaging manifestations. Creating the enhancement patterns of various diseases can have great clinical significance. (authors)

Aggregation Operator Based Fuzzy Pattern Classifier Design

DEFF Research Database (Denmark)

Mönks, Uwe; Larsen, Henrik Legind; Lohweg, Volker

2009-01-01

This paper presents a novel modular fuzzy pattern classifier design framework for intelligent automation systems, developed on the base of the established Modified Fuzzy Pattern Classifier (MFPC) and allows designing novel classifier models which are hardware-efficiently implementable....... The performances of novel classifiers using substitutes of MFPC's geometric mean aggregator are benchmarked in the scope of an image processing application against the MFPC to reveal classification improvement potentials for obtaining higher classification rates....

LOW-FREQUENCY OSCILLATIONS IN GLOBAL SIMULATIONS OF BLACK HOLE ACCRETION

International Nuclear Information System (INIS)

O'Neill, Sean M.; Reynolds, Christopher S.; Coleman Miller, M.; Sorathia, Kareem A.

2011-01-01

We have identified the presence of large-scale, low-frequency dynamo cycles in a long-duration, global, magnetohydrodynamic (MHD) simulation of black hole accretion. Such cycles have previously been seen in local shearing box simulations, but we discuss their evolution over 1500 inner disk orbits of a global π/4 disk wedge spanning two orders of magnitude in radius and seven scale heights in elevation above/below the disk midplane. The observed cycles manifest themselves as oscillations in azimuthal magnetic field occupying a region that extends into a low-density corona several scale heights above the disk. The cycle frequencies are 10-20 times lower than the local orbital frequency, making them potentially interesting sources of low-frequency variability when scaled to real astrophysical systems. Furthermore, power spectra derived from the full time series reveal that the cycles manifest themselves at discrete, narrowband frequencies that often share power across broad radial ranges. We explore possible connections between these simulated cycles and observed low-frequency quasi-periodic oscillations (LFQPOs) in galactic black hole binary systems, finding that dynamo cycles have the appropriate frequencies and are located in a spatial region associated with X-ray emission in real systems. Derived observational proxies, however, fail to feature peaks with rms amplitudes comparable to LFQPO observations, suggesting that further theoretical work and more sophisticated simulations will be required to form a complete theory of dynamo-driven LFQPOs. Nonetheless, this work clearly illustrates that global MHD dynamos exhibit quasi-periodic behavior on timescales much longer than those derived from test particle considerations.

Behavioral states may be associated with distinct spatial patterns in electrocorticogram.

Science.gov (United States)

Panagiotides, Heracles; Freeman, Walter J; Holmes, Mark D; Pantazis, Dimitrios

2011-03-01

To determine if behavioral states are associated with unique spatial electrocorticographic (ECoG) patterns, we obtained recordings with a microgrid electrode array applied to the cortical surface of a human subject. The array was constructed with the intent of extracting maximal spatial information by optimizing interelectrode distances. A 34-year-old patient with intractable epilepsy underwent intracranial ECoG monitoring after standard methods failed to reveal localization of seizures. During the 8-day period of invasive recording, in addition to standard clinical electrodes a square 1 × 1 cm microgrid array with 64 electrodes (1.25 mm separation) was placed on the right inferior temporal gyrus. Careful review of video recordings identified four extended naturalistic behaviors: reading, conversing on the telephone, looking at photographs, and face-to-face interactions. ECoG activity recorded with the microgrid that corresponded to these behaviors was collected and ECoG spatial patterns were analyzed. During periods of ECoG selected for analysis, no electrographic seizures or epileptiform patterns were present. Moments of maximal spatial variance are shown to cluster by behavior. Comparisons between conditions using a permutation test reveal significantly different spatial patterns for each behavior. We conclude that ECoG recordings obtained on the cortical surface with optimal high spatial frequency resolution reveal distinct local spatial patterns that reflect different behavioral states, and we predict that similar patterns will be found in many if not most cortical areas on which a microgrid is placed.

The evolution of pattern camouflage strategies in waterfowl and game birds.

Science.gov (United States)

Marshall, Kate L A; Gluckman, Thanh-Lan

2015-05-01

Visual patterns are common in animals. A broad survey of the literature has revealed that different patterns have distinct functions. Irregular patterns (e.g., stipples) typically function in static camouflage, whereas regular patterns (e.g., stripes) have a dual function in both motion camouflage and communication. Moreover, irregular and regular patterns located on different body regions ("bimodal" patterning) can provide an effective compromise between camouflage and communication and/or enhanced concealment via both static and motion camouflage. Here, we compared the frequency of these three pattern types and traced their evolutionary history using Bayesian comparative modeling in aquatic waterfowl (Anseriformes: 118 spp.), which typically escape predators by flight, and terrestrial game birds (Galliformes: 170 spp.), which mainly use a "sit and hide" strategy to avoid predation. Given these life histories, we predicted that selection would favor regular patterning in Anseriformes and irregular or bimodal patterning in Galliformes and that pattern function complexity should increase over the course of evolution. Regular patterns were predominant in Anseriformes whereas regular and bimodal patterns were most frequent in Galliformes, suggesting that patterns with multiple functions are broadly favored by selection over patterns with a single function in static camouflage. We found that the first patterns to evolve were either regular or bimodal in Anseriformes and either irregular or regular in Galliformes. In both orders, irregular patterns could evolve into regular patterns but not the reverse. Our hypothesis of increasing complexity in pattern camouflage function was supported in Galliformes but not in Anseriformes. These results reveal a trajectory of pattern evolution linked to increasing function complexity in Galliformes although not in Anseriformes, suggesting that both ecology and function complexity can have a profound influence on pattern evolution.

A THEORETICAL STUDY OF THE BUILD-UP OF THE SUN’S POLAR MAGNETIC FIELD BY USING A 3D KINEMATIC DYNAMO MODEL

Energy Technology Data Exchange (ETDEWEB)

Hazra, Gopal; Choudhuri, Arnab Rai [Department of Physics, Indian Institute of Science, Bangalore, 560012 (India); Miesch, Mark S., E-mail: ghazra@physics.iisc.ernet.in, E-mail: arnab@physics.iisc.ernet.in, E-mail: miesch@ucar.edu [High Altitude Observatory, National Center for Atmospheric Research, Boulder, CO 80301 (United States)

2017-01-20

We develop a three-dimensional kinematic self-sustaining model of the solar dynamo in which the poloidal field generation is from tilted bipolar sunspot pairs placed on the solar surface above regions of strong toroidal field by using the SpotMaker algorithm, and then the transport of this poloidal field to the tachocline is primarily caused by turbulent diffusion. We obtain a dipolar solution within a certain range of parameters. We use this model to study the build-up of the polar magnetic field and show that some insights obtained from surface flux transport models have to be revised. We present results obtained by putting a single bipolar sunspot pair in a hemisphere and two symmetrical sunspot pairs in two hemispheres. We find that the polar fields produced by them disappear due to the upward advection of poloidal flux at low latitudes, which emerges as oppositely signed radial flux and which is then advected poleward by the meridional flow. We also study the effect that a large sunspot pair, violating Hale’s polarity law, would have on the polar field. We find that there would be some effect—especially if the anti-Hale pair appears at high latitudes in the mid-phase of the cycle—though the effect is not very dramatic.

High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation.

Science.gov (United States)

Anandapadamanaban, Madhanagopal; Andresen, Cecilia; Helander, Sara; Ohyama, Yoshifumi; Siponen, Marina I; Lundström, Patrik; Kokubo, Tetsuro; Ikura, Mitsuhiko; Moche, Martin; Sunnerhagen, Maria

2013-08-01

The general transcription factor TFIID provides a regulatory platform for transcription initiation. Here we present the crystal structure (1.97 Å) and NMR analysis of yeast TAF1 N-terminal domains TAND1 and TAND2 bound to yeast TBP, together with mutational data. We find that yeast TAF1-TAND1, which in itself acts as a transcriptional activator, binds TBP's concave DNA-binding surface by presenting similar anchor residues to TBP as does Mot1 but from a distinct structural scaffold. Furthermore, we show how TAF1-TAND2 uses an aromatic and acidic anchoring pattern to bind a conserved TBP surface groove traversing the basic helix region, and we find highly similar TBP-binding motifs also presented by the structurally distinct TFIIA, Mot1 and Brf1 proteins. Our identification of these anchoring patterns, which can be easily disrupted or enhanced, provides insight into the competitive multiprotein TBP interplay critical to transcriptional regulation.

Phylogeny of bent-toed geckos (Cyrtodactylus) reveals a west to east pattern of diversification.

Science.gov (United States)

Wood, Perry L; Heinicke, Matthew P; Jackman, Todd R; Bauer, Aaron M

2012-12-01

The Asian/Pacific genus Cyrtodactylus is the most diverse and among the most widely distributed genera of geckos, and more species are continually being discovered. Major patterns in the evolutionary history of Cyrtodactylus have remained largely unknown because no published study has broadly sampled across the geographic range and morphological diversity of the genus. We assembled a data set including sequences from one mitochondrial and three nuclear loci for 68 Cyrtodactylus and 20 other gekkotan species to infer phylogenetic relationships within the genus and identify major biogeographic patterns. Our results indicate that Cyrtodactylus is monophyletic, but only if the Indian/Sri Lankan species sometimes recognized as Geckoella are included. Basal divergences divide Cyrtodactylus into three well-supported groups: the single species C. tibetanus, a clade of Myanmar/southern Himalayan species, and a large clade including all other Cyrtodactylus plus Geckoella. Within the largest major clade are several well-supported subclades, with separate subclades being most diverse in Thailand, Eastern Indochina, the Sunda region, the Papuan region, and the Philippines, respectively. The phylogenetic results, along with molecular clock and ancestral area analyses, show Cyrtodactylus to have originated in the circum-Himalayan region just after the Cretaceous/Paleogene boundary, with a generally west to east pattern of colonization and diversification progressing through the Cenozoic. Wallacean species are derived from within a Sundaland radiation, the Philippines were colonized from Borneo, and Australia was colonized twice, once via New Guinea and once via the Lesser Sundas. Overall, these results are consistent with past suggestions of a Palearctic origin for Cyrtodactylus, and highlight the key role of geography in diversification of the genus. Copyright © 2012 Elsevier Inc. All rights reserved.

Surface magnetization and the role of pattern defects in various types of ripple patterned films

International Nuclear Information System (INIS)

Colino, Jose M; Arranz, Miguel A; Barbero, Antonio J; Bollero, A; Camarero, J

2016-01-01

We present a detailed study of the magnetic properties of cobalt films with wide-area nanoscale ripple patterns, either on their surface only, or on both the film surface and substrate interface. Angular dependence vectorial-resolved magnetometry measurements and magnetic force microscopy with in situ magnetic field have been used to determine the magnetization reversal processes to correlate them to the different patterned nanostructures. All the samples show well-defined uniaxial magnetic anisotropy with the anisotropy axis lying along the ripple direction. Atomic force microscopy of the different types of pattern reveals various pattern defects: height corrugation and breaks of continuity along the ripple direction, and overlapping ripples and Y-shaped defects (pattern dislocation) across the pattern. In spite of the existence of such customary defects of erosive-regime patterns, the type of low-amplitude, surface-patterned films remarkably behave as a macrospin over almost the whole in-plane angular range (340°), with negligible spread of anisotropy axis or energy. In turn, it is found that high-amplitude surface-patterned films develop an angular distribution of anisotropy axes, probably related to the large distribution of amplitudes in a pattern of short ripples, and a significant distribution of anisotropy fields ΔH k /H k up to 15%. On the other hand, films grow on pre-patterned silicon with a significantly longer mean ripple length, and develop a larger anisotropy energy with H k up to 110 mT, probably because of the double interface effect. The switching fields close to the magnetization easy axis of all types of ripple pattern are not well reproduced by the macrospin approximation, but the observed pattern defects seem to be not responsible for the domain wall pinning that occurs with the field applied along the ripple direction. (paper)

Lectin binding patterns and immunohistochemical antigen detection ...

African Journals Online (AJOL)

Ibrahim Eldaghayes

2018-02-09

Feb 9, 2018 ... placenta and lungs of Brucella abortus-bovine infected fetuses. María Andrea ... The present lectin histochemical study revealed a distinctive pattern of oligosaccharide .... tissue was used as a positive control and nonimmune.

The Origin and Dynamics of Solar Magnetism

CERN Document Server

Thompson, M. J; Culhane, J. L; Nordlund, Å; Solanki, S. K; Zahn, J.-P

2009-01-01

The articles collected in this volume present all aspects of solar magnetism: from its origin in the solar dynamo to its evolution and dynamics that create the variability of solar phenomena, its well-known 11-year activity cycle that leads to the ever-changing pattern of sunspots and active regions on the Sun. Several contributions deal with the solar dynamo, the driver of many solar phenomena. Other contributions treat the transport and emergence of the magnetic flux through the outer layers of the Sun. The coupling of magnetic fields from the surface to the solar corona and beyond is also described, together with current studies on the predictability of solar activity. This book is aimed at researchers and graduate students working in solar physics and space science. It provides a full review of our current understanding of solar magnetism by the foremost experts in the field.

Dietary patterns and colorectal cancer.

Science.gov (United States)

Tayyem, Reema F; Bawadi, Hiba A; Shehadah, Ihab; Agraib, Lana M; AbuMweis, Suhad S; Al-Jaberi, Tareq; Al-Nusairr, Majed; Bani-Hani, Kamal E; Heath, Dennis D

2017-06-01

Dietary pattern and lifestyle have been reported to be important risk factors in the development of colorectal cancer (CRC). However, the mechanism of action of dietary factors in CRC disease is unclear. The aim of this study is the examination of several dietary choices and their potential association with the risk of developing CRC. Dietary data was collected from 220 subjects who were previously diagnosed with CRC, and 281 control subjects (matched by age, gender, occupation and marital status). The data was collected between January 2010 and December 2012, using interview-based questionnaires. Multivariate logistic regression was used to estimate the relationship between dietary choices and risk of developing colorectal cancer. Factor analysis revealed three major dietary patterns. The first pattern we identified as the "Healthy Pattern", the second was identified as "High Sugar/High Tea Pattern" and the third as "Western Pattern". In the Healthy Pattern group we found a 10.54% variation in food intake, while the intake variation was 11.64% in the Western Pattern. After adjusting for confounding factors, the Western Pattern food choice was found to be significantly associated with an increased risk of developing CRC (OR = 1.88; 95% CI = 1.12-3.16). The results for the Healthy and High-Sugar/High Tea Patterns showed a decrease, but the statistic was not significant for the risk of CRC development. The Western Pattern of dietary choice was directly associated with CRC. The association between the dietary food choice in the Healthy and High-Sugar/High Tea Patterns and colorectal cancer needs further study in our Jordanian population. Copyright © 2016 Elsevier Ltd and European Society for Clinical Nutrition and Metabolism. All rights reserved.

Patterns - “A crime solver”

Science.gov (United States)

Nagasupriya, A; Dhanapal, Raghu; Reena, K; Saraswathi, TR; Ramachandran, CR

2011-01-01

Objective: This study is intended to analyze the predominant pattern of lip and finger prints in males and females and to correlate lip print and finger print for gender identity. Materials and Methods: The study sample comprised of 200 students of Vishnu Dental College, Bhimavaram, Andhra Pradesh, 100 males and 100 females aged between 18 to 27 years. Brown/pink colored lip stick was applied on the lips and the subject was asked to spread it uniformly over the lips. Lip prints were traced in the normal rest position of the lips with the help of cellophane tape. The imprint of the left thumb was taken on a white chart sheet and visualized using magnifying lens. While three main types of finger prints are identified, the classification of lip prints is simplified into branched, reticular, and vertical types. Association between lip prints and finger prints was statistically tested using Chi-square test. Results: This study showed that lip and finger patterns did not reveal statistically significant results within the gender. The correlation between lip and finger patterns for gender identification, was statistically significant. In males, branched type of lip pattern associated with arch, loop, and whorl type of finger pattern was most significant. In females, vertical lip pattern associated with arch finger pattern and reticular lip pattern associated with whorl finger patterns were most significant. Conclusion: We conclude that a correlative study between the lip print and finger print will be very useful in forensic science for gender identification. PMID:22022131

The role of consolidation in learning context-dependent phonotactic patterns in speech and digital sequence production.

Science.gov (United States)

Anderson, Nathaniel D; Dell, Gary S

2018-04-03

Speakers implicitly learn novel phonotactic patterns by producing strings of syllables. The learning is revealed in their speech errors. First-order patterns, such as "/f/ must be a syllable onset," can be distinguished from contingent, or second-order, patterns, such as "/f/ must be an onset if the vowel is /a/, but a coda if the vowel is /o/." A metaanalysis of 19 experiments clearly demonstrated that first-order patterns affect speech errors to a very great extent in a single experimental session, but second-order vowel-contingent patterns only affect errors on the second day of testing, suggesting the need for a consolidation period. Two experiments tested an analogue to these studies involving sequences of button pushes, with fingers as "consonants" and thumbs as "vowels." The button-push errors revealed two of the key speech-error findings: first-order patterns are learned quickly, but second-order thumb-contingent patterns are only strongly revealed in the errors on the second day of testing. The influence of computational complexity on the implicit learning of phonotactic patterns in speech production may be a general feature of sequence production.

Long-term acoustical observations of the mesopelagic fish Maurolicus muelleri reveal novel and varied vertical migration patterns

KAUST Repository

Staby, A

2011-11-15

We studied the temporal dynamics in the vertical distribution of Maurolicus muelleri scattering layers (SL) by examining continuous acoustic recordings over a 15 mo period in Masfjorden, Norway, complemented by intermittent sampling campaigns. The data revealed known patterns as normal diel vertical migration (DVM), midnight sinking between dusk and dawn, and periods without migrations, as well as novel behaviours consisting of early morning ascents, reverse diel vertical migrations, and interrupted ascents in the evening. During the first autumn of the study, adult fish modified their normal DVM behaviour by suspending their migration in the evening, yet ascending toward the surface in the later part of the night to reach upper layers during dawn. This behaviour was not observed during the second autumn of the study. By mid- to end of November (1st autumn), adult fish had suspended the nocturnal ascent entirely, and in the subsequent period until the end of January, a fraction of the population rather performed limited reverse migrations, slightly shifting their vertical distribution upwards during the first part of the day. From January to March 2008, fish interrupted their evening ascent at apparently random intervals and returned to deeper waters, instead of completing a full ascent to the surface. Our study underlines the value of long-term recordings, with the results suggesting that M. muelleri has the capability of changing its behaviour in response to ontogeny and internal state (satiation and hunger) as well as to external stimuli.

What Do Citation Patterns Reveal about the Outdoor Education Field? A Snapshot 2000-2013

Science.gov (United States)

Brookes, Andrew; Stewart, Alistair

2016-01-01

This study considered what insights into outdoor education (OE) research and scholarship could be gleaned from citation indices and patterns. Citation indices have long been used as ranking tools in the physical sciences, and more recently have been used in humanities and social sciences. High citation measures indicate high research impact,…

Estimating repetitive spatiotemporal patterns from resting-state brain activity data.

Science.gov (United States)

Takeda, Yusuke; Hiroe, Nobuo; Yamashita, Okito; Sato, Masa-Aki

2016-06-01

Repetitive spatiotemporal patterns in spontaneous brain activities have been widely examined in non-human studies. These studies have reported that such patterns reflect past experiences embedded in neural circuits. In human magnetoencephalography (MEG) and electroencephalography (EEG) studies, however, spatiotemporal patterns in resting-state brain activities have not been extensively examined. This is because estimating spatiotemporal patterns from resting-state MEG/EEG data is difficult due to their unknown onsets. Here, we propose a method to estimate repetitive spatiotemporal patterns from resting-state brain activity data, including MEG/EEG. Without the information of onsets, the proposed method can estimate several spatiotemporal patterns, even if they are overlapping. We verified the performance of the method by detailed simulation tests. Furthermore, we examined whether the proposed method could estimate the visual evoked magnetic fields (VEFs) without using stimulus onset information. The proposed method successfully detected the stimulus onsets and estimated the VEFs, implying the applicability of this method to real MEG data. The proposed method was applied to resting-state functional magnetic resonance imaging (fMRI) data and MEG data. The results revealed informative spatiotemporal patterns representing consecutive brain activities that dynamically change with time. Using this method, it is possible to reveal discrete events spontaneously occurring in our brains, such as memory retrieval. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Single-Column Modeling of Convection During the CINDY2011/DYNAMO Field Campaign With the CNRM Climate Model Version 6

Science.gov (United States)

Abdel-Lathif, Ahmat Younous; Roehrig, Romain; Beau, Isabelle; Douville, Hervé

2018-03-01

A single-column model (SCM) approach is used to assess the CNRM climate model (CNRM-CM) version 6 ability to represent the properties of the apparent heat source (Q1) and moisture sink (Q2) as observed during the 3 month CINDY2011/DYNAMO field campaign, over its Northern Sounding Array (NSA). The performance of the CNRM SCM is evaluated in a constrained configuration in which the latent and sensible heat surface fluxes are prescribed, as, when forced by observed sea surface temperature, the model is strongly limited by the underestimate of the surface fluxes, most probably related to the SCM forcing itself. The model exhibits a significant cold bias in the upper troposphere, near 200 hPa, and strong wet biases close to the surface and above 700 hPa. The analysis of the Q1 and Q2 profile distributions emphasizes the properties of the convective parameterization of the CNRM-CM physics. The distribution of the Q2 profile is particularly challenging. The model strongly underestimates the frequency of occurrence of the deep moistening profiles, which likely involve misrepresentation of the shallow and congestus convection. Finally, a statistical approach is used to objectively define atmospheric regimes and construct a typical convection life cycle. A composite analysis shows that the CNRM SCM captures the general transition from bottom-heavy to mid-heavy to top-heavy convective heating. Some model errors are shown to be related to the stratiform regimes. The moistening observed during the shallow and congestus convection regimes also requires further improvements of this CNRM-CM physics.

A novel comparative pattern count analysis reveals a chronic ethanol-induced dynamic shift in immediate early NF-κB genome-wide promoter binding during liver regeneration.

Science.gov (United States)

Kuttippurathu, Lakshmi; Patra, Biswanath; Hoek, Jan B; Vadigepalli, Rajanikanth

2016-03-01

Liver regeneration after partial hepatectomy is a clinically important process that is impaired by adaptation to chronic alcohol intake. We focused on the initial time points following partial hepatectomy (PHx) to analyze the genome-wide binding activity of NF-κB, a key immediate early regulator. We investigated the effect of chronic alcohol intake on immediate early NF-κB genome-wide localization, in the adapted state as well as in response to partial hepatectomy, using chromatin immunoprecipitation followed by promoter microarray analysis. We found many ethanol-specific NF-κB binding target promoters in the ethanol-adapted state, corresponding to the regulation of biosynthetic processes, oxidation-reduction and apoptosis. Partial hepatectomy induced a diet-independent shift in NF-κB binding loci relative to the transcription start sites. We employed a novel pattern count analysis to exhaustively enumerate and compare the number of promoters corresponding to the temporal binding patterns in ethanol and pair-fed control groups. The highest pattern count corresponded to promoters with NF-κB binding exclusively in the ethanol group at 1 h post PHx. This set was associated with the regulation of cell death, response to oxidative stress, histone modification, mitochondrial function, and metabolic processes. Integration with the global gene expression profiles to identify putative transcriptional consequences of NF-κB binding patterns revealed that several of ethanol-specific 1 h binding targets showed ethanol-specific differential expression through 6 h post PHx. Motif analysis yielded co-incident binding loci for STAT3, AP-1, CREB, C/EBP-β, PPAR-γ and C/EBP-α, likely participating in co-regulatory modules with NF-κB in shaping the immediate early response to PHx. We conclude that adaptation to chronic ethanol intake disrupts the NF-κB promoter binding landscape with consequences for the immediate early gene regulatory response to the acute challenge of PHx.

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

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Riaño-Pachón Diego

2007-08-01

Full Text Available Abstract Background In plants, complex regulatory mechanisms are at the core of physiological and developmental processes. The phytohormone abscisic acid (ABA is involved in the regulation of various such processes, including stomatal closure, seed and bud dormancy, and physiological responses to cold, drought and salinity stress. The underlying tissue or plant-wide control circuits often include combinatorial gene regulatory mechanisms and networks that we are only beginning to unravel with the help of new molecular tools. The increasing availability of genomic sequences and gene expression data enables us to dissect ABA regulatory mechanisms at the individual gene expression level. In this paper we used an in-silico-based approach directed towards genome-wide prediction and identification of specific features of ABA-responsive elements. In particular we analysed the genome-wide occurrence and positional arrangements of two well-described ABA-responsive cis-regulatory elements (CREs, ABRE and CE3, in thale cress (Arabidopsis thaliana and rice (Oryza sativa. Results Our results show that Arabidopsis and rice use the ABA-responsive elements ABRE and CE3 distinctively. Earlier reports for various monocots have identified CE3 as a coupling element (CE associated with ABRE. Surprisingly, we found that while ABRE is equally abundant in both species, CE3 is practically absent in Arabidopsis. ABRE-ABRE pairs are common in both genomes, suggesting that these can form functional ABA-responsive complexes (ABRCs in Arabidopsis and rice. Furthermore, we detected distinct combinations, orientation patterns and DNA strand preferences of ABRE and CE3 motifs in rice gene promoters. Conclusion Our computational analyses revealed distinct recruitment patterns of ABA-responsive CREs in upstream sequences of Arabidopsis and rice. The apparent absence of CE3s in Arabidopsis suggests that another CE pairs with ABRE to establish a functional ABRC capable of

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice.

Science.gov (United States)

Gómez-Porras, Judith L; Riaño-Pachón, Diego Mauricio; Dreyer, Ingo; Mayer, Jorge E; Mueller-Roeber, Bernd

2007-08-01

In plants, complex regulatory mechanisms are at the core of physiological and developmental processes. The phytohormone abscisic acid (ABA) is involved in the regulation of various such processes, including stomatal closure, seed and bud dormancy, and physiological responses to cold, drought and salinity stress. The underlying tissue or plant-wide control circuits often include combinatorial gene regulatory mechanisms and networks that we are only beginning to unravel with the help of new molecular tools. The increasing availability of genomic sequences and gene expression data enables us to dissect ABA regulatory mechanisms at the individual gene expression level. In this paper we used an in-silico-based approach directed towards genome-wide prediction and identification of specific features of ABA-responsive elements. In particular we analysed the genome-wide occurrence and positional arrangements of two well-described ABA-responsive cis-regulatory elements (CREs), ABRE and CE3, in thale cress (Arabidopsis thaliana) and rice (Oryza sativa). Our results show that Arabidopsis and rice use the ABA-responsive elements ABRE and CE3 distinctively. Earlier reports for various monocots have identified CE3 as a coupling element (CE) associated with ABRE. Surprisingly, we found that while ABRE is equally abundant in both species, CE3 is practically absent in Arabidopsis. ABRE-ABRE pairs are common in both genomes, suggesting that these can form functional ABA-responsive complexes (ABRCs) in Arabidopsis and rice. Furthermore, we detected distinct combinations, orientation patterns and DNA strand preferences of ABRE and CE3 motifs in rice gene promoters. Our computational analyses revealed distinct recruitment patterns of ABA-responsive CREs in upstream sequences of Arabidopsis and rice. The apparent absence of CE3s in Arabidopsis suggests that another CE pairs with ABRE to establish a functional ABRC capable of interacting with transcription factors. Further studies will be

Temporal-pattern similarity analysis reveals the beneficial and detrimental effects of context reinstatement on human memory.

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Staudigl, Tobias; Vollmar, Christian; Noachtar, Soheyl; Hanslmayr, Simon

2015-04-01

A powerful force in human memory is the context in which memories are encoded (Tulving and Thomson, 1973). Several studies suggest that the reinstatement of neural encoding patterns is beneficial for memory retrieval (Manning et al., 2011; Staresina et al., 2012; Jafarpour et al., 2014). However, reinstatement of the original encoding context is not always helpful, for instance, when retrieving a memory in a different contextual situation (Smith and Vela, 2001). It is an open question whether such context-dependent memory effects can be captured by the reinstatement of neural patterns. We investigated this question by applying temporal and spatial pattern similarity analysis in MEG and intracranial EEG in a context-match paradigm. Items (words) were tagged by individual dynamic context stimuli (movies). The results show that beta oscillatory phase in visual regions and the parahippocampal cortex tracks the incidental reinstatement of individual context trajectories on a single-trial level. Crucially, memory benefitted from reinstatement when the encoding and retrieval contexts matched but suffered from reinstatement when the contexts did not match. Copyright © 2015 the authors 0270-6474/15/355373-12$15.00/0.

Striation Patterns of Ox Muscle in Rigor Mortis

Science.gov (United States)

Locker, Ronald H.

1959-01-01

Ox muscle in rigor mortis offers a selection of myofibrils fixed at varying degrees of contraction from sarcomere lengths of 3.7 to 0.7 µ. A study of this material by phase contrast and electron microscopy has revealed four distinct successive patterns of contraction, including besides the familiar relaxed and contracture patterns, two intermediate types (2.4 to 1.9 µ, 1.8 to 1.5 µ) not previously well described. PMID:14417790

Polymer nanocomposite patterning by dip-pen nanolithography

International Nuclear Information System (INIS)

Kandemir, Ayse Cagil; Ma, Huan; Reiser, Alain; Spolenak, Ralph; Erdem, Derya

2016-01-01

The ultimate aim of this study is to construct polymer nanocomposite patterns by dip-pen nanolithography (DPN). Recent investigations have revealed the effect of the amount of ink (Laplace pressure) on the mechanism of liquid ink writing. In this study it is shown that not only the amount of ink, but also physisorption and surface diffusion are relevant. After a few writing steps, physisorption and surface diffusion outweigh the influence of the amount of ink, allowing consistent patterning governed by dwell times and writing speeds. Polymer matrices can be utilized as a delivery medium to deposit functional particles. DPN patterning of polymer nanocomposites allows for local tuning of the functionality and mechanical strength of the written patterns in high resolution, with the benefit of pattern flexibility. Typically polymer matrices with volatile components are used as a delivery medium for nanoparticle deposition, with subsequent removal of loosely bound matrix material by heating or oxygen plasma. In our study, nanocomposite patterns were constructed, and the differences between polymer and nanocomposite patterning were investigated. Cross-sectional SEM and TEM analysis confirmed that nanoparticles can be deposited with the liquid-polymer ink and are evenly distributed in the polymer matrix. (paper)

Population genetics of two key mosquito vectors of Rift Valley Fever virus reveals new insights into the changing disease outbreak patterns in Kenya.

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David P Tchouassi

2014-12-01

Full Text Available Rift Valley fever (RVF outbreaks in Kenya have increased in frequency and range to include northeastern Kenya where viruses are increasingly being isolated from known (Aedes mcintoshi and newly-associated (Ae. ochraceus vectors. The factors contributing to these changing outbreak patterns are unclear and the population genetic structure of key vectors and/or specific virus-vector associations, in particular, are under-studied. By conducting mitochondrial and nuclear DNA analyses on >220 Kenyan specimens of Ae. mcintoshi and Ae. ochraceus, we uncovered high levels of vector complexity which may partly explain the disease outbreak pattern. Results indicate that Ae. mcintoshi consists of a species complex with one of the member species being unique to the newly-established RVF outbreak-prone northeastern region of Kenya, whereas Ae. ochraceus is a homogeneous population that appears to be undergoing expansion. Characterization of specimens from a RVF-prone site in Senegal, where Ae. ochraceus is a primary vector, revealed direct genetic links between the two Ae. ochraceus populations from both countries. Our data strongly suggest that unlike Ae. mcintoshi, Ae. ochraceus appears to be a relatively recent, single 'introduction' into Kenya. These results, together with increasing isolations from this vector, indicate that Ae. ochraceus will likely be of greater epidemiological importance in future RVF outbreaks in Kenya. Furthermore, the overall vector complexity calls into question the feasibility of mosquito population control approaches reliant on genetic modification.

Population Genetics of Two Key Mosquito Vectors of Rift Valley Fever Virus Reveals New Insights into the Changing Disease Outbreak Patterns in Kenya

Science.gov (United States)

Tchouassi, David P.; Bastos, Armanda D. S.; Sole, Catherine L.; Diallo, Mawlouth; Lutomiah, Joel; Mutisya, James; Mulwa, Francis; Borgemeister, Christian; Sang, Rosemary; Torto, Baldwyn

2014-01-01

Rift Valley fever (RVF) outbreaks in Kenya have increased in frequency and range to include northeastern Kenya where viruses are increasingly being isolated from known (Aedes mcintoshi) and newly-associated (Ae. ochraceus) vectors. The factors contributing to these changing outbreak patterns are unclear and the population genetic structure of key vectors and/or specific virus-vector associations, in particular, are under-studied. By conducting mitochondrial and nuclear DNA analyses on >220 Kenyan specimens of Ae. mcintoshi and Ae. ochraceus, we uncovered high levels of vector complexity which may partly explain the disease outbreak pattern. Results indicate that Ae. mcintoshi consists of a species complex with one of the member species being unique to the newly-established RVF outbreak-prone northeastern region of Kenya, whereas Ae. ochraceus is a homogeneous population that appears to be undergoing expansion. Characterization of specimens from a RVF-prone site in Senegal, where Ae. ochraceus is a primary vector, revealed direct genetic links between the two Ae. ochraceus populations from both countries. Our data strongly suggest that unlike Ae. mcintoshi, Ae. ochraceus appears to be a relatively recent, single 'introduction' into Kenya. These results, together with increasing isolations from this vector, indicate that Ae. ochraceus will likely be of greater epidemiological importance in future RVF outbreaks in Kenya. Furthermore, the overall vector complexity calls into question the feasibility of mosquito population control approaches reliant on genetic modification. PMID:25474018

Cardiovascular magnetic resonance imaging (CMR) reveals characteristic pattern of myocardial damage in patients with mitochondrial myopathy.

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Yilmaz, Ali; Gdynia, Hans-Jürgen; Ponfick, Matthias; Rösch, Sabine; Lindner, Alfred; Ludolph, Albert C; Sechtem, Udo

2012-04-01

Mitochondrial myopathy comprises various clinical subforms of neuromuscular disorders that are characterised by impaired mitochondrial energy metabolism due to dysfunction of the mitochondrial respiratory chain. No comprehensive and targeted cardiovascular magnetic resonance (CMR) studies have been performed so far in patients with mitochondrial disorders. The present study aimed at characterising cardiac disease manifestations in patients with mitochondrial myopathy and elucidating the in vivo cardiac damage pattern of patients with different subforms of mitochondrial disease by CMR studies. In a prospective study, 37 patients with mitochondrial myopathy underwent comprehensive neurological and cardiac evaluations including physical examination, resting ECG and CMR. The CMR studies comprised cine-CMR, T2-weighted "edema" imaging and T1-weighted late-gadolinium-enhancement (LGE) imaging. Various patterns and degrees of skeletal myopathy were present in the participants of this study, whereas clinical symptoms such as chest pain symptoms (in eight (22%) patients) and various degrees of dyspnea (in 16 (43%) patients) were less frequent. Pathological ECG findings were documented in eight (22%) patients. T2-weighted "edema" imaging was positive in one (3%) patient with MELAS (mitochondrial encephalomyopathy with lactic acidosis and stroke-like episodes) only. LGE imaging demonstrated the presence of non-ischemic LGE in 12 (32%) patients: 10 out of 24 (42%) patients with CPEO (chronic progressive external ophthalmoplegia) or KSS (Kearns-Sayre syndrome) and 2 of 3 (67%) patients with MELAS were LGE positive. All 10 LGE-positive patients with CPEO or KSS demonstrated a potentially typical pattern of diffuse intramural LGE in the left-ventricular (LV) inferolateral segments. Cardiac involvement is a frequent finding in patients with mitochondrial myopathy. A potentially characteristic pattern of diffuse intramural LGE in the LV inferolateral segments was identified in

Square Turing patterns in reaction-diffusion systems with coupled layers

Energy Technology Data Exchange (ETDEWEB)

Li, Jing [State Key Laboratory for Mesoscopic Physics and School of Physics, Peking University, Beijing 100871 (China); Wang, Hongli, E-mail: hlwang@pku.edu.cn, E-mail: qi@pku.edu.cn [State Key Laboratory for Mesoscopic Physics and School of Physics, Peking University, Beijing 100871 (China); Center for Quantitative Biology, Peking University, Beijing 100871 (China); Ouyang, Qi, E-mail: hlwang@pku.edu.cn, E-mail: qi@pku.edu.cn [State Key Laboratory for Mesoscopic Physics and School of Physics, Peking University, Beijing 100871 (China); Center for Quantitative Biology, Peking University, Beijing 100871 (China); The Peking-Tsinghua Center for Life Sciences, Beijing 100871 (China)

2014-06-15

Square Turing patterns are usually unstable in reaction-diffusion systems and are rarely observed in corresponding experiments and simulations. We report here an example of spontaneous formation of square Turing patterns with the Lengyel-Epstein model of two coupled layers. The squares are found to be a result of the resonance between two supercritical Turing modes with an appropriate ratio. Besides, the spatiotemporal resonance of Turing modes resembles to the mode-locking phenomenon. Analysis of the general amplitude equations for square patterns reveals that the fixed point corresponding to square Turing patterns is stationary when the parameters adopt appropriate values.

A Smartphone App Reveals Erratic Diurnal Eating Patterns in Humans that Can Be Modulated for Health Benefits.

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Gill, Shubhroz; Panda, Satchidananda

2015-11-03

A diurnal rhythm of eating-fasting promotes health, but the eating pattern of humans is rarely assessed. Using a mobile app, we monitored ingestion events in healthy adults with no shift-work for several days. Most subjects ate frequently and erratically throughout wakeful hours, and overnight fasting duration paralleled time in bed. There was a bias toward eating late, with an estimated 35% after 6 p.m. "Metabolic jetlag" resulting from weekday/weekend variation in eating pattern akin to travel across time zones was prevalent. The daily intake duration (95% interval) exceeded 14.75 hr for half of the cohort. When overweight individuals with >14 hr eating duration ate for only 10-11 hr daily for 16 weeks assisted by a data visualization (raster plot of dietary intake pattern, "feedogram") that we developed, they reduced body weight, reported being energetic, and improved sleep. Benefits persisted for a year. Copyright © 2015 Elsevier Inc. All rights reserved.

Deviant patterns of methylphenidate use in adults

DEFF Research Database (Denmark)

Rasmussen, Lotte; Zoëga, Helga; Hallas, Jesper

2015-01-01

of drugs used in addictive disorders (OR2 2.08) or opioids (OR2 1.75). Sensitivity analyses revealed that the number of different prescribers alone does not seem to effectively identify deviant users of methylphenidate. CONCLUSION: We have identified characteristics associated with deviant patterns...

Time-Varying Networks of Inter-Ictal Discharging Reveal Epileptogenic Zone.

Science.gov (United States)

Zhang, Luyan; Liang, Yi; Li, Fali; Sun, Hongbin; Peng, Wenjing; Du, Peishan; Si, Yajing; Song, Limeng; Yu, Liang; Xu, Peng

2017-01-01

The neuronal synchronous discharging may cause an epileptic seizure. Currently, most of the studies conducted to investigate the mechanism of epilepsy are based on EEGs or functional magnetic resonance imaging (fMRI) recorded during the ictal discharging or the resting-state, and few studies have probed into the dynamic patterns during the inter-ictal discharging that are much easier to record in clinical applications. Here, we propose a time-varying network analysis based on adaptive directed transfer function to uncover the dynamic brain network patterns during the inter-ictal discharging. In addition, an algorithm based on the time-varying outflow of information derived from the network analysis is developed to detect the epileptogenic zone. The analysis performed revealed the time-varying network patterns during different stages of inter-ictal discharging; the epileptogenic zone was activated prior to the discharge onset then worked as the source to propagate the activity to other brain regions. Consistence between the epileptogenic zones detected by our proposed approach and the actual epileptogenic zones proved that time-varying network analysis could not only reveal the underlying neural mechanism of epilepsy, but also function as a useful tool in detecting the epileptogenic zone based on the EEGs in the inter-ictal discharging.

Protein patterns of yeast during sporulation

International Nuclear Information System (INIS)

Litske Petersen, J.G.; Kielland-Brandt, M.C.; Nilsson-Tillgren, T.

1979-01-01

High resolution two-dimensional gel electrophoresis was used to study protein synthesis during synchronous meiosis and ascospore formation of Saccharomyces cerevisiae. The stained protein patterns of samples harvested at any stage between meiotic prophase and the four-spore stage in two sporulating strains showed the same approximately 250 polypeptides. Of these only a few seemed to increase or decrease in concentration during sporulation. The characteristic pattern of sporulating yeast was identical to the pattern of glucose-grown staitonary yeast cells adapted to respiration. The latter type of cells readily initiates meiosis when transferred to sporulation medium. This pattern differed from the protein patterns of exponentially growing cells in glucose or acetate presporulation medium. Five major proteins in stationary and sporulating yeast cells were not detected in either type of exponential culture. Two-dimensional autoradiograms of [ 35 S]methionine-labelled yeast proteins revealed that some proteins were preferentially labelled during sporulation, while other proteins were labelled at later stages. These patterns differed from the auroradiograms of exponentially growing yeast cells in glucose presporulation medium in a number of spots. No differences were observed when stained gels or autoradiograms of sporulating cultures and non-sporulating strains in sporulation medium were compared. (author)

Time-scales of stellar rotational variability and starspot diagnostics

Science.gov (United States)

Arkhypov, Oleksiy V.; Khodachenko, Maxim L.; Lammer, Helmut; Güdel, Manuel; Lüftinger, Teresa; Johnstone, Colin P.

2018-01-01

The difference in stability of starspot distribution on the global and hemispherical scales is studied in the rotational spot variability of 1998 main-sequence stars observed by Kepler mission. It is found that the largest patterns are much more stable than smaller ones for cool, slow rotators, whereas the difference is less pronounced for hotter stars and/or faster rotators. This distinction is interpreted in terms of two mechanisms: (1) the diffusive decay of long-living spots in activity complexes of stars with saturated magnetic dynamos, and (2) the spot emergence, which is modulated by gigantic turbulent flows in convection zones of stars with a weaker magnetism. This opens a way for investigation of stellar deep convection, which is yet inaccessible for asteroseismology. Moreover, a subdiffusion in stellar photospheres was revealed from observations for the first time. A diagnostic diagram was proposed that allows differentiation and selection of stars for more detailed studies of these phenomena.

Online Access Patterns and Students

Directory of Open Access Journals (Sweden)

Nasir Butrous

2011-04-01

Full Text Available The paper follows accessing patterns of five cohorts of postgraduate students enrolled in a core unit within a master of business administration (MBA program. The unit is designed to provide numerous opportunities for student participation in Discussion Boards using Blackboard technology. Discussion Boards create numerous opportunities for interaction amongst online learners to share and exchange their experiences, creating a sense of a virtual community. Relationships between accessing patterns for each week of the semester for each student are explored in relation to their performance using course statistics generated by the Blackboard technology. Close examination of the significant differences in access patterns to the course window and its components of communication, content, and student areas reveal middle of the semester (week 7 as the common critical point that differentiates high achieving students from low achieving students. Identifying critical points provides the faculty staff member an opportunity to introduce intervention strategies in order to improve the learning experience of all the students.

Comprehensive regional and temporal gene expression profiling of the rat brain during the first 24 h after experimental stroke identifies dynamic ischemia-induced gene expression patterns, and reveals a biphasic activation of genes in surviving tissue

DEFF Research Database (Denmark)

Rickhag, Karl Mattias; Wieloch, Tadeusz; Gidö, Gunilla

2006-01-01

middle cerebral artery occlusion in the rat. K-means cluster analysis revealed two distinct biphasic gene expression patterns that contained 44 genes (including 18 immediate early genes), involved in cell signaling and plasticity (i.e. MAP2K7, Sprouty2, Irs-2, Homer1, GPRC5B, Grasp). The first gene...

A camera-phone based study reveals erratic eating pattern and disrupted daily eating-fasting cycle among adults in India.

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Neelu Jain Gupta

Full Text Available The daily rhythm of feeding-fasting and meal-timing are emerging as important determinants of health. Circadian rhythm research in animal models and retrospective analyses of human nutrition data have shown that reduced length of overnight fasting or increased late night eating increases risk for metabolic diseases including obesity and diabetes. However, the daily rhythm in eating pattern in humans is rarely measured. Traditional methods to collect nutrition information through food diary and food log pay little attention to the timing of eating which may also change from day to day. We adopted a novel cell-phone based approach to longitudinally record all events of food and beverage intake in adults. In a feasibility study daily food-eating patterns of 93 healthy individuals were recorded for 21 days using camera phones. Analysis of the daily eating patterns of these individuals indicates deviation from conventional assumption that people eat three meals-a-day within a 12 h interval. We found that eating events are widespread throughout the day, with 30% consumed in evening and late night hours. There was little difference in eating pattern between weekdays and weekends. In this cohort more than 50% of people spread their caloric intake events over 15 h or longer. One decile of the cohort who were spouses of shift-workers or had flexible work schedule spread their caloric intake over 20 h. Although the nutrition quality and diversity of food consumed is different between South-East Asian and Western countries, such overall disruption of daily eating-fasting rhythm is similar. Therefore, in view of hypothesis that disrupted daily eating pattern may contribute to the global increase in metabolic diseases and modification of daily eating pattern is a potential modifiable behavior to contain these diseases, monitoring eating pattern is an important aspect of lifestyle.

A camera-phone based study reveals erratic eating pattern and disrupted daily eating-fasting cycle among adults in India.

Science.gov (United States)

Gupta, Neelu Jain; Kumar, Vinod; Panda, Satchidananda

2017-01-01

The daily rhythm of feeding-fasting and meal-timing are emerging as important determinants of health. Circadian rhythm research in animal models and retrospective analyses of human nutrition data have shown that reduced length of overnight fasting or increased late night eating increases risk for metabolic diseases including obesity and diabetes. However, the daily rhythm in eating pattern in humans is rarely measured. Traditional methods to collect nutrition information through food diary and food log pay little attention to the timing of eating which may also change from day to day. We adopted a novel cell-phone based approach to longitudinally record all events of food and beverage intake in adults. In a feasibility study daily food-eating patterns of 93 healthy individuals were recorded for 21 days using camera phones. Analysis of the daily eating patterns of these individuals indicates deviation from conventional assumption that people eat three meals-a-day within a 12 h interval. We found that eating events are widespread throughout the day, with 30% consumed in evening and late night hours. There was little difference in eating pattern between weekdays and weekends. In this cohort more than 50% of people spread their caloric intake events over 15 h or longer. One decile of the cohort who were spouses of shift-workers or had flexible work schedule spread their caloric intake over 20 h. Although the nutrition quality and diversity of food consumed is different between South-East Asian and Western countries, such overall disruption of daily eating-fasting rhythm is similar. Therefore, in view of hypothesis that disrupted daily eating pattern may contribute to the global increase in metabolic diseases and modification of daily eating pattern is a potential modifiable behavior to contain these diseases, monitoring eating pattern is an important aspect of lifestyle.

Vertical Movements and Patterns in Diving Behavior of Whale Sharks as Revealed by Pop-Up Satellite Tags in the Eastern Gulf of Mexico.

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John P Tyminski

Full Text Available The whale shark (Rhincodon typus is a wide-ranging, filter-feeding species typically observed at or near the surface. This shark's sub-surface habits and behaviors have only begun to be revealed in recent years through the use of archival and satellite tagging technology. We attached pop-up satellite archival transmitting tags to 35 whale sharks in the southeastern Gulf of Mexico off the Yucatan Peninsula from 2003-2012 and three tags to whale sharks in the northeastern Gulf off Florida in 2010, to examine these sharks' long-term movement patterns and gain insight into the underlying factors influencing their vertical habitat selection. Archived data were received from 31 tags deployed on sharks of both sexes with total lengths of 5.5-9 m. Nine of these tags were physically recovered facilitating a detailed long-term view into the sharks' vertical movements. Whale sharks feeding inshore on fish eggs off the northeast Yucatan Peninsula demonstrated reverse diel vertical migration, with extended periods of surface swimming beginning at sunrise followed by an abrupt change in the mid-afternoon to regular vertical oscillations, a pattern that continued overnight. When in oceanic waters, sharks spent about 95% of their time within epipelagic depths (500 m that largely occurred during daytime or twilight hours (max. depth recorded 1,928 m, had V-shaped depth-time profiles, and comprised more rapid descents (0.68 m sec-1 than ascents (0.50 m sec-1. Nearly half of these extreme dives had descent profiles with brief but conspicuous changes in vertical direction at a mean depth of 475 m. We hypothesize these stutter steps represent foraging events within the deep scattering layer, however, the extreme dives may have additional functions. Overall, our results demonstrate complex and dynamic patterns of habitat utilization for R. typus that appear to be in response to changing biotic and abiotic conditions influencing the distribution and abundance of their

Vertical Movements and Patterns in Diving Behavior of Whale Sharks as Revealed by Pop-Up Satellite Tags in the Eastern Gulf of Mexico

Science.gov (United States)

Tyminski, John P.; de la Parra-Venegas, Rafael; González Cano, Jaime; Hueter, Robert E.

2015-01-01

The whale shark (Rhincodon typus) is a wide-ranging, filter-feeding species typically observed at or near the surface. This shark’s sub-surface habits and behaviors have only begun to be revealed in recent years through the use of archival and satellite tagging technology. We attached pop-up satellite archival transmitting tags to 35 whale sharks in the southeastern Gulf of Mexico off the Yucatan Peninsula from 2003–2012 and three tags to whale sharks in the northeastern Gulf off Florida in 2010, to examine these sharks’ long-term movement patterns and gain insight into the underlying factors influencing their vertical habitat selection. Archived data were received from 31 tags deployed on sharks of both sexes with total lengths of 5.5–9 m. Nine of these tags were physically recovered facilitating a detailed long-term view into the sharks’ vertical movements. Whale sharks feeding inshore on fish eggs off the northeast Yucatan Peninsula demonstrated reverse diel vertical migration, with extended periods of surface swimming beginning at sunrise followed by an abrupt change in the mid-afternoon to regular vertical oscillations, a pattern that continued overnight. When in oceanic waters, sharks spent about 95% of their time within epipelagic depths (500 m) that largely occurred during daytime or twilight hours (max. depth recorded 1,928 m), had V-shaped depth-time profiles, and comprised more rapid descents (0.68 m sec-1) than ascents (0.50 m sec-1). Nearly half of these extreme dives had descent profiles with brief but conspicuous changes in vertical direction at a mean depth of 475 m. We hypothesize these stutter steps represent foraging events within the deep scattering layer, however, the extreme dives may have additional functions. Overall, our results demonstrate complex and dynamic patterns of habitat utilization for R. typus that appear to be in response to changing biotic and abiotic conditions influencing the distribution and abundance of their prey

Molecular characterization of HCV in a Swedish county over 8 years (2002–2009 reveals distinct transmission patterns

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Josefine Ederth

2016-02-01

Full Text Available Background: Hepatitis C virus (HCV is a major public health concern and data on its molecular epidemiology in Sweden is scarce. We carried out an 8-year population-based study of newly diagnosed HCV cases in one of Sweden's centrally situated counties, Södermanland (D-county. The aim was to characterize the HCV strains circulating, analyze their genetic relatedness to detect networks, and in combination with demographic data learn more about transmission. Methods: Molecular analyses of serum samples from 91% (N=557 of all newly notified cases in D-county, 2002–2009, were performed. Phylogenetic analysis (NS5B gene, 300 bp was linked to demographic data from the national surveillance database, SmiNet, to characterize D-county transmission clusters. The linear-by-linear association test (LBL was used to analyze trends over time. Results: The most prevalent subtypes were 1a (38% and 3a (34%. Subtype 1a was most prevalent among cases transmitted via sexual contact, via contaminated blood, or blood products, while subtype 3a was most prevalent among people who inject drugs (PWIDs. Phylogenetic analysis revealed that the subtype 3a sequences formed more and larger transmission clusters (50% of the sequences clustered, while the 1a sequences formed smaller clusters (19% of the sequences clustered, possibly suggesting different epidemics. Conclusion: We found different transmission patterns in D-county which may, from a public health perspective, have implications for how to control virus infections by targeted interventions.

Chimera patterns in the Kuramoto–Battogtokh model

International Nuclear Information System (INIS)

Smirnov, Lev; Osipov, Grigory; Pikovsky, Arkady

2017-01-01

Kuramoto and Battogtokh (2002 Nonlinear Phenom. Complex Syst . 5 380) discovered chimera states represented by stable coexisting synchrony and asynchrony domains in a lattice of coupled oscillators. After a reformulation in terms of a local order parameter, the problem can be reduced to partial differential equations. We find uniformly rotating, spatially periodic chimera patterns as solutions of a reversible ordinary differential equation, and demonstrate a plethora of such states. In the limit of neutral coupling they reduce to analytical solutions in the form of one- and two-point chimera patterns as well as localized chimera solitons. Patterns at weakly attracting coupling are characterized by virtue of a perturbative approach. Stability analysis reveals that only the simplest chimeras with one synchronous region are stable. (letter)

Chimera patterns in the Kuramoto-Battogtokh model

Science.gov (United States)

Smirnov, Lev; Osipov, Grigory; Pikovsky, Arkady

2017-02-01

Kuramoto and Battogtokh (2002 Nonlinear Phenom. Complex Syst. 5 380) discovered chimera states represented by stable coexisting synchrony and asynchrony domains in a lattice of coupled oscillators. After a reformulation in terms of a local order parameter, the problem can be reduced to partial differential equations. We find uniformly rotating, spatially periodic chimera patterns as solutions of a reversible ordinary differential equation, and demonstrate a plethora of such states. In the limit of neutral coupling they reduce to analytical solutions in the form of one- and two-point chimera patterns as well as localized chimera solitons. Patterns at weakly attracting coupling are characterized by virtue of a perturbative approach. Stability analysis reveals that only the simplest chimeras with one synchronous region are stable.

Genome-Wide Methylome Analyses Reveal Novel Epigenetic Regulation Patterns in Schizophrenia and Bipolar Disorder

Science.gov (United States)

Li, Yongsheng; Camarillo, Cynthia; Xu, Juan; Arana, Tania Bedard; Xiao, Yun; Zhao, Zheng; Chen, Hong; Ramirez, Mercedes; Zavala, Juan; Escamilla, Michael A.; Armas, Regina; Mendoza, Ricardo; Ontiveros, Alfonso; Nicolini, Humberto; Jerez Magaña, Alvaro Antonio; Rubin, Lewis P.; Li, Xia; Xu, Chun

2015-01-01

Schizophrenia (SZ) and bipolar disorder (BP) are complex genetic disorders. Their appearance is also likely informed by as yet only partially described epigenetic contributions. Using a sequencing-based method for genome-wide analysis, we quantitatively compared the blood DNA methylation landscapes in SZ and BP subjects to control, both in an understudied population, Hispanics along the US-Mexico border. Remarkably, we identified thousands of differentially methylated regions for SZ and BP preferentially located in promoters 3′-UTRs and 5′-UTRs of genes. Distinct patterns of aberrant methylation of promoter sequences were located surrounding transcription start sites. In these instances, aberrant methylation occurred in CpG islands (CGIs) as well as in flanking regions as well as in CGI sparse promoters. Pathway analysis of genes displaying these distinct aberrant promoter methylation patterns showed enhancement of epigenetic changes in numerous genes previously related to psychiatric disorders and neurodevelopment. Integration of gene expression data further suggests that in SZ aberrant promoter methylation is significantly associated with altered gene transcription. In particular, we found significant associations between (1) promoter CGIs hypermethylation with gene repression and (2) CGI 3′-shore hypomethylation with increased gene expression. Finally, we constructed a specific methylation analysis platform that facilitates viewing and comparing aberrant genome methylation in human neuropsychiatric disorders. PMID:25734057

Evidence for an impact-induced magnetic fabric in Allende, and exogenous alternatives to the core dynamo theory for Allende magnetization

Science.gov (United States)

Muxworthy, Adrian R.; Bland, Phillip A.; Davison, Thomas M.; Moore, James; Collins, Gareth S.; Ciesla, Fred J.

2017-10-01

We conducted a paleomagnetic study of the matrix of Allende CV3 chondritic meteorite, isolating the matrix's primary remanent magnetization, measuring its magnetic fabric and estimating the ancient magnetic field intensity. A strong planar magnetic fabric was identified; the remanent magnetization of the matrix was aligned within this plane, suggesting a mechanism relating the magnetic fabric and remanence. The intensity of the matrix's remanent magnetization was found to be consistent and low ( 6 μT). The primary magnetic mineral was found to be pyrrhotite. Given the thermal history of Allende, we conclude that the remanent magnetization was formed during or after an impact event. Recent mesoscale impact modeling, where chondrules and matrix are resolved, has shown that low-velocity collisions can generate significant matrix temperatures, as pore-space compaction attenuates shock energy and dramatically increases the amount of heating. Nonporous chondrules are unaffected, and act as heat-sinks, so matrix temperature excursions are brief. We extend this work to model Allende, and show that a 1 km/s planar impact generates bulk porosity, matrix porosity, and fabric in our target that match the observed values. Bimodal mixtures of a highly porous matrix and nominally zero-porosity chondrules make chondrites uniquely capable of recording transient or unstable fields. Targets that have uniform porosity, e.g., terrestrial impact craters, will not record transient or unstable fields. Rather than a core dynamo, it is therefore possible that the origin of the magnetic field in Allende was the impact itself, or a nebula field recorded during transient impact heating.

[Variables related to the emergence of differential patterns in work motivation].

Science.gov (United States)

Arrieta, Carlos; Navarro, José; Vicente, Susana

2008-11-01

Several longitudinal studies have shown that motivation at work acts chaotically. In very few cases, it may be linear or random. However, the factors that might explain why these different patterns emerge have not been analysed to date. In this exploratory study, we interviewed 73 employees whose motivational patterns were previously known. The results revealed that chaotic patterns were associated with high levels of motivation, self-efficacy beliefs, and perceptions of instrumentality, and also with intrinsic personal goal orientation and a perception of high work control. Linear patterns were associated with extrinsic goals and a perception of work as difficult, and random patterns were linked to high flexibility at work.

Strain Pattern in Supercooled Liquids

Science.gov (United States)

Illing, Bernd; Fritschi, Sebastian; Hajnal, David; Klix, Christian; Keim, Peter; Fuchs, Matthias

2016-11-01

Investigations of strain correlations at the glass transition reveal unexpected phenomena. The shear strain fluctuations show an Eshelby-strain pattern [˜cos (4 θ ) /r2 ], characteristic of elastic response, even in liquids, at long times. We address this using a mode-coupling theory for the strain fluctuations in supercooled liquids and data from both video microscopy of a two-dimensional colloidal glass former and simulations of Brownian hard disks. We show that the long-ranged and long-lived strain signatures follow a scaling law valid close to the glass transition. For large enough viscosities, the Eshelby-strain pattern is visible even on time scales longer than the structural relaxation time τ and after the shear modulus has relaxed to zero.

Soil erosion dynamics response to landscape pattern

NARCIS (Netherlands)

Ouyang, W.; Skidmore, A.K.; Hao, F.; Wang, T.

2010-01-01

Simulating soil erosion variation with a temporal land use database reveals long-term fluctuations in landscape patterns, as well as priority needs for soil erosion conservation. The application of a multi-year land use database in support of a Soil Water Assessment Tool (SWAT) led to an accurate

Shared memories reveal shared structure in neural activity across individuals

Science.gov (United States)

Chen, J.; Leong, Y.C.; Honey, C.J.; Yong, C.H.; Norman, K.A.; Hasson, U.

2016-01-01

Our lives revolve around sharing experiences and memories with others. When different people recount the same events, how similar are their underlying neural representations? Participants viewed a fifty-minute movie, then verbally described the events during functional MRI, producing unguided detailed descriptions lasting up to forty minutes. As each person spoke, event-specific spatial patterns were reinstated in default-network, medial-temporal, and high-level visual areas. Individual event patterns were both highly discriminable from one another and similar between people, suggesting consistent spatial organization. In many high-order areas, patterns were more similar between people recalling the same event than between recall and perception, indicating systematic reshaping of percept into memory. These results reveal the existence of a common spatial organization for memories in high-level cortical areas, where encoded information is largely abstracted beyond sensory constraints; and that neural patterns during perception are altered systematically across people into shared memory representations for real-life events. PMID:27918531

Multivariate pattern dependence.

Directory of Open Access Journals (Sweden)

Stefano Anzellotti

2017-11-01

Full Text Available When we perform a cognitive task, multiple brain regions are engaged. Understanding how these regions interact is a fundamental step to uncover the neural bases of behavior. Most research on the interactions between brain regions has focused on the univariate responses in the regions. However, fine grained patterns of response encode important information, as shown by multivariate pattern analysis. In the present article, we introduce and apply multivariate pattern dependence (MVPD: a technique to study the statistical dependence between brain regions in humans in terms of the multivariate relations between their patterns of responses. MVPD characterizes the responses in each brain region as trajectories in region-specific multidimensional spaces, and models the multivariate relationship between these trajectories. We applied MVPD to the posterior superior temporal sulcus (pSTS and to the fusiform face area (FFA, using a searchlight approach to reveal interactions between these seed regions and the rest of the brain. Across two different experiments, MVPD identified significant statistical dependence not detected by standard functional connectivity. Additionally, MVPD outperformed univariate connectivity in its ability to explain independent variance in the responses of individual voxels. In the end, MVPD uncovered different connectivity profiles associated with different representational subspaces of FFA: the first principal component of FFA shows differential connectivity with occipital and parietal regions implicated in the processing of low-level properties of faces, while the second and third components show differential connectivity with anterior temporal regions implicated in the processing of invariant representations of face identity.

Solar Activity Across the Scales: From Small-Scale Quiet-Sun Dynamics to Magnetic Activity Cycles

Science.gov (United States)

Kitiashvili, Irina N.; Collins, Nancy N.; Kosovichev, Alexander G.; Mansour, Nagi N.; Wray, Alan A.

2017-01-01

Observations as well as numerical and theoretical models show that solar dynamics is characterized by complicated interactions and energy exchanges among different temporal and spatial scales. It reveals magnetic self-organization processes from the smallest scale magnetized vortex tubes to the global activity variation known as the solar cycle. To understand these multiscale processes and their relationships, we use a two-fold approach: 1) realistic 3D radiative MHD simulations of local dynamics together with high resolution observations by IRIS, Hinode, and SDO; and 2) modeling of solar activity cycles by using simplified MHD dynamo models and mathematical data assimilation techniques. We present recent results of this approach, including the interpretation of observational results from NASA heliophysics missions and predictive capabilities. In particular, we discuss the links between small-scale dynamo processes in the convection zone and atmospheric dynamics, as well as an early prediction of Solar Cycle 25.

Ananke: temporal clustering reveals ecological dynamics of microbial communities

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Michael W. Hall

2017-09-01

Full Text Available Taxonomic markers such as the 16S ribosomal RNA gene are widely used in microbial community analysis. A common first step in marker-gene analysis is grouping genes into clusters to reduce data sets to a more manageable size and potentially mitigate the effects of sequencing error. Instead of clustering based on sequence identity, marker-gene data sets collected over time can be clustered based on temporal correlation to reveal ecologically meaningful associations. We present Ananke, a free and open-source algorithm and software package that complements existing sequence-identity-based clustering approaches by clustering marker-gene data based on time-series profiles and provides interactive visualization of clusters, including highlighting of internal OTU inconsistencies. Ananke is able to cluster distinct temporal patterns from simulations of multiple ecological patterns, such as periodic seasonal dynamics and organism appearances/disappearances. We apply our algorithm to two longitudinal marker gene data sets: faecal communities from the human gut of an individual sampled over one year, and communities from a freshwater lake sampled over eleven years. Within the gut, the segregation of the bacterial community around a food-poisoning event was immediately clear. In the freshwater lake, we found that high sequence identity between marker genes does not guarantee similar temporal dynamics, and Ananke time-series clusters revealed patterns obscured by clustering based on sequence identity or taxonomy. Ananke is free and open-source software available at https://github.com/beiko-lab/ananke.

Ionospheric storms at geophysically-equivalent sites – Part 1: Storm-time patterns for sub-auroral ionospheres

Directory of Open Access Journals (Sweden)

M. Mendillo

2009-04-01

Full Text Available The systematic study of ionospheric storms has been conducted primarily with groundbased data from the Northern Hemisphere. Significant progress has been made in defining typical morphology patterns at all latitudes; mechanisms have been identified and tested via modeling. At higher mid-latitudes (sites that are typically sub-auroral during non-storm conditions, the processes that change significantly during storms can be of comparable magnitudes, but with different time constants. These include ionospheric plasma dynamics from the penetration of magnetospheric electric fields, enhancements to thermospheric winds due to auroral and Joule heating inputs, disturbance dynamo electrodynamics driven by such winds, and thermospheric composition changes due to the changed circulation patterns. The ~12° tilt of the geomagnetic field axis causes significant longitude effects in all of these processes in the Northern Hemisphere. A complementary series of longitude effects would be expected to occur in the Southern Hemisphere. In this paper we begin a series of studies to investigate the longitudinal-hemispheric similarities and differences in the response of the ionosphere's peak electron density to geomagnetic storms. The ionosonde stations at Wallops Island (VA and Hobart (Tasmania have comparable geographic and geomagnetic latitudes for sub-auroral locations, are situated at longitudes close to that of the dipole tilt, and thus serve as our candidate station-pair choice for studies of ionospheric storms at geophysically-comparable locations. They have an excellent record of observations of the ionospheric penetration frequency (foF2 spanning several solar cycles, and thus are suitable for long-term studies. During solar cycle #20 (1964–1976, 206 geomagnetic storms occurred that had Ap≥30 or Kp≥5 for at least one day of the storm. Our analysis of average storm-time perturbations (percent deviations from the monthly means showed a remarkable

Beyond Contagion: Reality Mining Reveals Complex Patterns of Social Influence.

Directory of Open Access Journals (Sweden)

Aamena Alshamsi

Full Text Available Contagion, a concept from epidemiology, has long been used to characterize social influence on people's behavior and affective (emotional states. While it has revealed many useful insights, it is not clear whether the contagion metaphor is sufficient to fully characterize the complex dynamics of psychological states in a social context. Using wearable sensors that capture daily face-to-face interaction, combined with three daily experience sampling surveys, we collected the most comprehensive data set of personality and emotion dynamics of an entire community of work. From this high-resolution data about actual (rather than self-reported face-to-face interaction, a complex picture emerges where contagion (that can be seen as adaptation of behavioral responses to the behavior of other people cannot fully capture the dynamics of transitory states. We found that social influence has two opposing effects on states: adaptation effects that go beyond mere contagion, and complementarity effects whereby individuals' behaviors tend to complement the behaviors of others. Surprisingly, these effects can exhibit completely different directions depending on the stable personality or emotional dispositions (stable traits of target individuals. Our findings provide a foundation for richer models of social dynamics, and have implications on organizational engineering and workplace well-being.

Beyond Contagion: Reality Mining Reveals Complex Patterns of Social Influence.

Science.gov (United States)

Alshamsi, Aamena; Pianesi, Fabio; Lepri, Bruno; Pentland, Alex; Rahwan, Iyad

2015-01-01

Contagion, a concept from epidemiology, has long been used to characterize social influence on people's behavior and affective (emotional) states. While it has revealed many useful insights, it is not clear whether the contagion metaphor is sufficient to fully characterize the complex dynamics of psychological states in a social context. Using wearable sensors that capture daily face-to-face interaction, combined with three daily experience sampling surveys, we collected the most comprehensive data set of personality and emotion dynamics of an entire community of work. From this high-resolution data about actual (rather than self-reported) face-to-face interaction, a complex picture emerges where contagion (that can be seen as adaptation of behavioral responses to the behavior of other people) cannot fully capture the dynamics of transitory states. We found that social influence has two opposing effects on states: adaptation effects that go beyond mere contagion, and complementarity effects whereby individuals' behaviors tend to complement the behaviors of others. Surprisingly, these effects can exhibit completely different directions depending on the stable personality or emotional dispositions (stable traits) of target individuals. Our findings provide a foundation for richer models of social dynamics, and have implications on organizational engineering and workplace well-being.

Connecting the dots : Illusory pattern perception predicts belief in conspiracies and the supernatural

NARCIS (Netherlands)

van Prooijen, Jan Willem; Douglas, Karen M.; De Inocencio, Clara

A common assumption is that belief in conspiracy theories and supernatural phenomena are grounded in illusory pattern perception. In the present research we systematically tested this assumption. Study 1 revealed that such irrational beliefs are related to perceiving patterns in randomly generated

THERMODYNAMIC LIMITS ON MAGNETODYNAMOS IN ROCKY EXOPLANETS

International Nuclear Information System (INIS)

Gaidos, Eric; Conrad, Clinton P.; Manga, Michael; Hernlund, John

2010-01-01

To ascertain whether magnetic dynamos operate in rocky exoplanets more massive or hotter than the Earth, we developed a parametric model of a differentiated rocky planet and its thermal evolution. Our model reproduces the established properties of Earth's interior and magnetic field at the present time. When applied to Venus, assuming that planet lacks plate tectonics and has a dehydrated mantle with an elevated viscosity, the model shows that the dynamo shuts down or never operated. Our model predicts that at a fixed planet mass, dynamo history is sensitive to core size, but not to the initial inventory of long-lived, heat-producing radionuclides. It predicts that rocky planets larger than 2.5 Earth masses will not develop inner cores because the temperature-pressure slope of the iron solidus becomes flatter than that of the core adiabat. Instead, iron 'snow' will condense near or at the top of these cores, and the net transfer of latent heat upward will suppress convection and a dynamo. More massive planets can have anemic dynamos due to core cooling, but only if they have mobile lids (plate tectonics). The lifetime of these dynamos is shorter with increasing planet mass but longer with higher surface temperature. Massive Venus-like planets with stagnant lids and more viscous mantles will lack dynamos altogether. We identify two alternative sources of magnetic fields on rocky planets: eddy currents induced in the hot or molten upper layers of planets on very short-period orbits, and dynamos in the ionic conducting layers of 'ocean' planets with ∼10% mass in an upper mantle of water (ice).

Dietary Patterns and Cardiovascular Disease–Related Risks in Chinese Older Adults

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Jing eSun

2013-11-01

Full Text Available AbstractStudies of Western populations demonstrate a relationship between dietary patterns and cardiovascular-related risk factors. Simiar research regarding Chinese populations is limited. This study explored the dietary patterns of Chinese older adults and their association with cardiovascular-related risk factors, including hypertension, obesity and metabolic syndrome. Data were collected using a 34-item Chinese food frequency questionnaire from 750 randomly selected older adults aged 50–88 who participated in the study in 2012. Factor analysis revealed four dietary patterns: a ‘traditional food pattern’, consisting of vegetable, fruit, rice, pork and fish; a ‘fast and processed food pattern’ consisting of fast or processed food products, sugar and confectionery; a ‘soybean, grain and flour food pattern’; and a ‘dairy, animal liver and other animal food pattern’. These patterns explained 17.48%, 9.52%, 5.51% and 4.80% of the variances in food intake, respectively. This study suggests that specific dietary patterns are evident in Chinese older adults. Moderate intake of ‘traditional Chinese food’ is associated with decreased blood pressure and cholesterol level. A dietary pattern rich in soybeans, grains, potatoes and flour is associated with reduced metabolic factors including reduced triglycerides, fasting glucose, waist circumference, and waist–hip ratio, and a high level of dairy, animal liver and other animal intake food pattern is associated with increased level of Body Mass Index. In conclusion, this study revealed identifiable dietary patterns among Chinese older adults that are significantly related to blood pressure and metabolic biomarkers. Further study using prospective cohort or intervention study should be used to confirm the association between dietary patterns and blood pressure and metabolic factors.

Rethinking pattern formation in reaction-diffusion systems

Science.gov (United States)

Halatek, J.; Frey, E.

2018-05-01

The present theoretical framework for the analysis of pattern formation in complex systems is mostly limited to the vicinity of fixed (global) equilibria. Here we present a new theoretical approach to characterize dynamical states arbitrarily far from (global) equilibrium. We show that reaction-diffusion systems that are driven by locally mass-conserving interactions can be understood in terms of local equilibria of diffusively coupled compartments. Diffusive coupling generically induces lateral redistribution of the globally conserved quantities, and the variable local amounts of these quantities determine the local equilibria in each compartment. We find that, even far from global equilibrium, the system is well characterized by its moving local equilibria. We apply this framework to in vitro Min protein pattern formation, a paradigmatic model for biological pattern formation. Within our framework we can predict and explain transitions between chemical turbulence and order arbitrarily far from global equilibrium. Our results reveal conceptually new principles of self-organized pattern formation that may well govern diverse dynamical systems.

Different patterns of auditory cortex activation revealed by functional magnetic resonance imaging

International Nuclear Information System (INIS)

Formisano, E.; Pepino, A.; Bracale, M.; Di Salle, F.; Lanfermann, H.; Zanella, F.E.

1998-01-01

In the last few years, functional Magnetic Resonance Imaging (fMRI) has been widely accepted as an effective tool for mapping brain activities in both the sensorimotor and the cognitive field. The present work aims to assess the possibility of using fMRI methods to study the cortical response to different acoustic stimuli. Furthermore, we refer to recent data collected at Frankfurt University on the cortical pattern of auditory hallucinations. Healthy subjects showed broad bilateral activation, mostly located in the transverse gyrus of Heschl. The analysis of the cortical activation induced by different stimuli has pointed out a remarkable difference in the spatial and temporal features of the auditory cortex response to pulsed tones and pure tones. The activated areas during episodes of auditory hallucinations match the location of primary auditory cortex as defined in control measurements with the same patients and in the experiments on healthy subjects. (authors)

Photoinduced Domain Pattern Transformation in Ferroelectric-Dielectric Superlattices

Energy Technology Data Exchange (ETDEWEB)

Ahn, Youngjun; Park, Joonkyu; Pateras, Anastasios; Rich, Matthew B.; Zhang, Qingteng; Chen, Pice; Yusuf, Mohammed H.; Wen, Haidan; Dawber, Matthew; Evans, Paul G.

2017-07-01

The nanodomain pattern in ferroelectric/dielectric superlattices transforms to a uniform polarization state under above-bandgap optical excitation. X-ray scattering reveals a disappearance of domain diffuse scattering and an expansion of the lattice. The reappearance of the domain pattern occurs over a period of seconds at room temperature, suggesting a transformation mechanism in which charge carriers in long-lived trap states screen the depolarization field. A Landau-Ginzburg-Devonshire model predicts changes in lattice parameter and a critical carrier concentration for the transformation.

Seasonal and Diel Activity Patterns of Eight Sympatric Mammals in Northern Japan Revealed by an Intensive Camera-Trap Survey.

Directory of Open Access Journals (Sweden)

Takashi Ikeda

Full Text Available The activity patterns of mammals are generally categorized as nocturnal, diurnal, crepuscular (active at twilight, and cathemeral (active throughout the day. These patterns are highly variable across regions and seasons even within the same species. However, quantitative data is still lacking, particularly for sympatric species. We monitored the seasonal and diel activity patterns of terrestrial mammals in Hokkaido, Japan. Through an intensive camera-trap survey a total of 13,279 capture events were recorded from eight mammals over 20,344 camera-trap days, i.e., two years. Diel activity patterns were clearly divided into four categories: diurnal (Eurasian red squirrels, nocturnal (raccoon dogs and raccoons, crepuscular (sika deer and mountain hares, and cathemeral (Japanese martens, red foxes, and brown bears. Some crepuscular and cathemeral mammals shifted activity peaks across seasons. Particularly, sika deer changed peaks from twilight during spring-autumn to day-time in winter, possibly because of thermal constraints. Japanese martens were cathemeral during winter-summer, but nocturnal in autumn. We found no clear indication of predator-prey and competitive interactions, suggesting that animal densities are not very high or temporal niche partitioning is absent among the target species. This long-term camera-trap survey was highly cost-effective and provided one of the most detailed seasonal and diel activity patterns in multiple sympatric mammals under natural conditions.

An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns.

Directory of Open Access Journals (Sweden)

Murray P Cox

2014-03-01

Full Text Available Polyploidy, a state in which the chromosome complement has undergone an increase, is a major force in evolution. Understanding the consequences of polyploidy has received much attention, and allopolyploids, which result from the union of two different parental genomes, are of particular interest because they must overcome a suite of biological responses to this merger, known as "genome shock." A key question is what happens to gene expression of the two gene copies following allopolyploidization, but until recently the tools to answer this question on a genome-wide basis were lacking. Here we utilize high throughput transcriptome sequencing to produce the first genome-wide picture of gene expression response to allopolyploidy in fungi. A novel pipeline for assigning sequence reads to the gene copies was used to quantify their expression in a fungal allopolyploid. We find that the transcriptional response to allopolyploidy is predominantly conservative: both copies of most genes are retained; over half the genes inherit parental gene expression patterns; and parental differential expression is often lost in the allopolyploid. Strikingly, the patterns of gene expression change are highly concordant with the genome-wide expression results of a cotton allopolyploid. The very different nature of these two allopolyploids implies a conserved, eukaryote-wide transcriptional response to genome merger. We provide evidence that the transcriptional responses we observe are mostly driven by intrinsic differences between the regulatory systems in the parent species, and from this propose a mechanistic model in which the cross-kingdom conservation in transcriptional response reflects conservation of the mutational processes underlying eukaryotic gene regulatory evolution. This work provides a platform to develop a universal understanding of gene expression response to allopolyploidy and suggests that allopolyploids are an exceptional system to investigate gene

Patterns of maternity care service utilization in Southern Ethiopia ...

African Journals Online (AJOL)

Patterns of maternity care service utilization in Southern Ethiopia: Evidence from a community ... PROMOTING ACCESS TO AFRICAN RESEARCH ... Result: The study revealed that only 26.1 % and 3.3% of the women received antenatal and ...

Patterned carbon nanotubes as a new three-dimensional scaffold for mesenchymal stem cells

Energy Technology Data Exchange (ETDEWEB)

Bitirim, Verda Ceylan [Department of Molecular Biology and Genetics, Bilkent University, 06800, Ankara (Turkey); Kucukayan-Dogu, Gokce [Institute of Engineering and Science, Material Science and Nanotechnology Graduate Program, Bilkent University, 06800, Ankara (Turkey); Bengu, Erman [Department of Chemistry, Bilkent University, 06800, Ankara (Turkey); Akcali, Kamil Can, E-mail: akcali@fen.bilkent.edu.tr [Department of Molecular Biology and Genetics, Bilkent University, 06800, Ankara (Turkey); Bilgen, Bilkent University Genetics and Biotechnology Research Center, 06800, Ankara (Turkey)

2013-07-01

We investigated the cellular adhesive features of mesenchymal stem cells (MSC) on non-coated and collagen coated patterned and vertically aligned carbon nanotube (CNT) structures mimicking the natural extra cellular matrix (ECM). Patterning was achieved using the elasto-capillary induced by water treatment on the CNT arrays. After confirmation with specific markers both at transcript and protein levels, MSCs from different passages were seeded on either collagen coated or non-coated patterned CNTs. Adhesion and growth of MSCs on the patterned CNT arrays were examined using scanning electron microscopy image analysis and 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-tetrazolium bromide (MTT) assays. The highest MSC count was observed on the non-coated patterned CNTs at passage zero, while decreasing numbers of MSCs were found at the later passages. Similarly, MTT assay results also revealed a decrease in the viability of the MSCs for the later passages. Overall, the cell count and viability experiments indicated that MSCs were able to better attach to non-coated patterned CNTs compared to those coated with collagen. Therefore, the patterned CNT surfaces can be potentially used as a scaffold mimicking the ECM environment for MSC growth which presents an alternative approach to MSC-based transplantation therapy applications. - Highlights: • Synthesized vertically aligned CNTs were patterned to be used as scaffold. • The growth of mesenchymal stem cells was achieved on the patterned CNTs. • The cell number was counted higher on the patterned CNTs than collagen coated CNTs. • The MTT assay results revealed the cell viability on the patterned CNTs.

Patterned carbon nanotubes as a new three-dimensional scaffold for mesenchymal stem cells

International Nuclear Information System (INIS)

Bitirim, Verda Ceylan; Kucukayan-Dogu, Gokce; Bengu, Erman; Akcali, Kamil Can

2013-01-01

We investigated the cellular adhesive features of mesenchymal stem cells (MSC) on non-coated and collagen coated patterned and vertically aligned carbon nanotube (CNT) structures mimicking the natural extra cellular matrix (ECM). Patterning was achieved using the elasto-capillary induced by water treatment on the CNT arrays. After confirmation with specific markers both at transcript and protein levels, MSCs from different passages were seeded on either collagen coated or non-coated patterned CNTs. Adhesion and growth of MSCs on the patterned CNT arrays were examined using scanning electron microscopy image analysis and 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-tetrazolium bromide (MTT) assays. The highest MSC count was observed on the non-coated patterned CNTs at passage zero, while decreasing numbers of MSCs were found at the later passages. Similarly, MTT assay results also revealed a decrease in the viability of the MSCs for the later passages. Overall, the cell count and viability experiments indicated that MSCs were able to better attach to non-coated patterned CNTs compared to those coated with collagen. Therefore, the patterned CNT surfaces can be potentially used as a scaffold mimicking the ECM environment for MSC growth which presents an alternative approach to MSC-based transplantation therapy applications. - Highlights: • Synthesized vertically aligned CNTs were patterned to be used as scaffold. • The growth of mesenchymal stem cells was achieved on the patterned CNTs. • The cell number was counted higher on the patterned CNTs than collagen coated CNTs. • The MTT assay results revealed the cell viability on the patterned CNTs

A new molecular logic for BMP-mediated dorsoventral patterning in the leech Helobdella.

Science.gov (United States)

Kuo, Dian-Han; Weisblat, David A

2011-08-09

Bone morphogenetic protein (BMP) signaling is broadly implicated in dorsoventral (DV) patterning of bilaterally symmetric animals [1-3], and its role in axial patterning apparently predates the birth of Bilateria [4-7]. In fly and vertebrate embryos, BMPs and their antagonists (primarily Sog/chordin) diffuse and interact to generate signaling gradients that pattern fields of cells [8-10]. Work in other species reveals diversity in essential facets of this ancient patterning process, however. Here, we report that BMP signaling patterns the DV axis of segmental ectoderm in the leech Helobdella, a clitellate annelid (superphylum Lophotrochozoa) featuring stereotyped developmental cell lineages, but the detailed mechanisms of DV patterning in Helobdella differ markedly from fly and vertebrates. In Helobdella, BMP2/4s are expressed broadly, rather than in dorsal territory, whereas a dorsally expressed BMP5-8 specifies dorsal fate by short-range signaling. A BMP antagonist, gremlin, is upregulated by BMP5-8 in dorsolateral, rather than ventral territory, and yet the BMP-antagonizing activity of gremlin is required for normal ventral cell fates. Gremlin promotes ventral fates without disrupting dorsal fates by selectively inhibiting BMP2/4s, not BMP5-8. Thus, DV patterning in the development of the leech revealed unexpected evolutionary plasticity of the conserved BMP patterning system, presumably reflecting its adaptation to different modes of embryogenesis. Copyright © 2011 Elsevier Ltd. All rights reserved.

Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments

NARCIS (Netherlands)

Sirota-Madi, A.; Olender, T.; Helman, Y.; Ingham, C.; Brainis, I.; Roth, D.; Hagi, E.; Brodsky, L.; Leshkowitz, D.; Galatenko, V.; Nikolaev, V.; Mugasimangalam, R.C.; Bransburg-Zabary, S.; Gutnick, D.L.; Lancet, D.; Ben-Jacob, E.

2010-01-01

Background: The pattern-forming bacterium Paenibacillus vortex is notable for its advanced social behavior, which is reflected in development of colonies with highly intricate architectures. Prior to this study, only two other Paenibacillus species (Paenibacillus sp. JDR-2 and Paenibacillus larvae)

Different patterns of auditory cortex activation revealed by functional magnetic resonance imaging

Energy Technology Data Exchange (ETDEWEB)

Formisano, E; Pepino, A; Bracale, M [Department of Electronic Engineering, Biomedical Unit, Universita di Napoli, Federic II, Italy, Via Claudio 21, 80125 Napoli (Italy); Di Salle, F [Department of Biomorphological and Functional Sciences, Radiologucal Unit, Universita di Napoli, Federic II, Italy, Via Claudio 21, 80125 Napoli (Italy); Lanfermann, H; Zanella, F E [Department of Neuroradiology, J.W. Goethe Universitat, Frankfurt/M. (Germany)

1999-12-31

In the last few years, functional Magnetic Resonance Imaging (fMRI) has been widely accepted as an effective tool for mapping brain activities in both the sensorimotor and the cognitive field. The present work aims to assess the possibility of using fMRI methods to study the cortical response to different acoustic stimuli. Furthermore, we refer to recent data collected at Frankfurt University on the cortical pattern of auditory hallucinations. Healthy subjects showed broad bilateral activation, mostly located in the transverse gyrus of Heschl. The analysis of the cortical activation induced by different stimuli has pointed out a remarkable difference in the spatial and temporal features of the auditory cortex response to pulsed tones and pure tones. The activated areas during episodes of auditory hallucinations match the location of primary auditory cortex as defined in control measurements with the same patients and in the experiments on healthy subjects. (authors) 17 refs., 4 figs.

Temporal motifs reveal collaboration patterns in online task-oriented networks

Science.gov (United States)

Xuan, Qi; Fang, Huiting; Fu, Chenbo; Filkov, Vladimir

2015-05-01

Real networks feature layers of interactions and complexity. In them, different types of nodes can interact with each other via a variety of events. Examples of this complexity are task-oriented social networks (TOSNs), where teams of people share tasks towards creating a quality artifact, such as academic research papers or software development in commercial or open source environments. Accomplishing those tasks involves both work, e.g., writing the papers or code, and communication, to discuss and coordinate. Taking into account the different types of activities and how they alternate over time can result in much more precise understanding of the TOSNs behaviors and outcomes. That calls for modeling techniques that can accommodate both node and link heterogeneity as well as temporal change. In this paper, we report on methodology for finding temporal motifs in TOSNs, limited to a system of two people and an artifact. We apply the methods to publicly available data of TOSNs from 31 Open Source Software projects. We find that these temporal motifs are enriched in the observed data. When applied to software development outcome, temporal motifs reveal a distinct dependency between collaboration and communication in the code writing process. Moreover, we show that models based on temporal motifs can be used to more precisely relate both individual developer centrality and team cohesion to programmer productivity than models based on aggregated TOSNs.

Sex differences in functional activation patterns revealed by increased emotion processing demands.

Science.gov (United States)

Hall, Geoffrey B C; Witelson, Sandra F; Szechtman, Henry; Nahmias, Claude

2004-02-09

Two [O(15)] PET studies assessed sex differences regional brain activation in the recognition of emotional stimuli. Study I revealed that the recognition of emotion in visual faces resulted in bilateral frontal activation in women, and unilateral right-sided activation in men. In study II, the complexity of the emotional face task was increased through tje addition of associated auditory emotional stimuli. Men again showed unilateral frontal activation, in this case to the left; whereas women did not show bilateral frontal activation, but showed greater limbic activity. These results suggest that when processing broader cross-modal emotional stimuli, men engage more in associative cognitive strategies while women draw more on primary emotional references.

Mantle convection patterns reveal the enigma of the Red Sea rifting

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Petrunin, Alexey; Kaban, Mikhail; El Khrepy, Sami; Al-Arifi, Nassir

2017-04-01

Initiation and further development of the Red Sea rift (RSR) is usually associated with the Afar plume at the Oligocene-Miocene separating the Arabian plate from the rest of the continent. Usually, the RSR is divided into three parts with different geological, tectonic and geophysical characteristics, but the nature of this partitioning is still debatable. To understand origin and driving forces responsible for the tectonic partitioning of the RSR, we have developed a global mantle convection model based on the refined density model and viscosity distribution derived from tectonic, rheological and seismic data. The global density model of the upper mantle is refined for the Middle East based on the high-resolution 3D model (Kaban et al., 2016). This model based on a joint inversion of the residual gravity and residual topography provides much better constraints on the 3D density structure compared to the global model based on seismic tomography. The refined density model and the viscosity distribution based on a homologous temperature approach provide an initial setup for further numerical calculations. The present-day snapshot of the mantle convection is calculated by using the code ProSpher 3D that allows for strong lateral variations of viscosity (Petrunin et al., 2013). The setup includes weak plate boundaries, while the measured GPS velocities are used to constrain the solution. The resulting mantle flow patterns show clear distinctions among the mantle flow patterns below the three parts of the RSR. According to the modeling results, tectonics of the southern part of the Red Sea is mainly determined by the Afar plume and the Ethiopian rift opening. It is characterized by a divergent mantle flow, which is connected to the East African Rift activity. The rising mantle flow is traced down to the transition zone and continues in the lower mantle for a few thousand kilometers south-west of Afar. The hot mantle anomaly below the central part of the RSR can be

High-density SNP genotyping of tomato (Solanum lycopersicum L. reveals patterns of genetic variation due to breeding.

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Sung-Chur Sim

Full Text Available The effects of selection on genome variation were investigated and visualized in tomato using a high-density single nucleotide polymorphism (SNP array. 7,720 SNPs were genotyped on a collection of 426 tomato accessions (410 inbreds and 16 hybrids and over 97% of the markers were polymorphic in the entire collection. Principal component analysis (PCA and pairwise estimates of F(st supported that the inbred accessions represented seven sub-populations including processing, large-fruited fresh market, large-fruited vintage, cultivated cherry, landrace, wild cherry, and S. pimpinellifolium. Further divisions were found within both the contemporary processing and fresh market sub-populations. These sub-populations showed higher levels of genetic diversity relative to the vintage sub-population. The array provided a large number of polymorphic SNP markers across each sub-population, ranging from 3,159 in the vintage accessions to 6,234 in the cultivated cherry accessions. Visualization of minor allele frequency revealed regions of the genome that distinguished three representative sub-populations of cultivated tomato (processing, fresh market, and vintage, particularly on chromosomes 2, 4, 5, 6, and 11. The PCA loadings and F(st outlier analysis between these three sub-populations identified a large number of candidate loci under positive selection on chromosomes 4, 5, and 11. The extent of linkage disequilibrium (LD was examined within each chromosome for these sub-populations. LD decay varied between chromosomes and sub-populations, with large differences reflective of breeding history. For example, on chromosome 11, decay occurred over 0.8 cM for processing accessions and over 19.7 cM for fresh market accessions. The observed SNP variation and LD decay suggest that different patterns of genetic variation in cultivated tomato are due to introgression from wild species and selection for market specialization.

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients.

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Matthias Merker

Full Text Available Multidrug-resistant (MDR Mycobacterium tuberculosis complex (MTBC strains represent a major threat for tuberculosis (TB control. Treatment of MDR-TB patients is long and less effective, resulting in a significant number of treatment failures. The development of further resistances leads to extensively drug-resistant (XDR variants. However, data on the individual reasons for treatment failure, e.g. an induced mutational burst, and on the evolution of bacteria in the patient are only sparsely available. To address this question, we investigated the intra-patient evolution of serial MTBC isolates obtained from three MDR-TB patients undergoing longitudinal treatment, finally leading to XDR-TB. Sequential isolates displayed identical IS6110 fingerprint patterns, suggesting the absence of exogenous re-infection. We utilized whole genome sequencing (WGS to screen for variations in three isolates from Patient A and four isolates from Patient B and C, respectively. Acquired polymorphisms were subsequently validated in up to 15 serial isolates by Sanger sequencing. We determined eight (Patient A and nine (Patient B polymorphisms, which occurred in a stepwise manner during the course of the therapy and were linked to resistance or a potential compensatory mechanism. For both patients, our analysis revealed the long-term co-existence of clonal subpopulations that displayed different drug resistance allele combinations. Out of these, the most resistant clone was fixed in the population. In contrast, baseline and follow-up isolates of Patient C were distinguished each by eleven unique polymorphisms, indicating an exogenous re-infection with an XDR strain not detected by IS6110 RFLP typing. Our study demonstrates that intra-patient microevolution of MDR-MTBC strains under longitudinal treatment is more complex than previously anticipated. However, a mutator phenotype was not detected. The presence of different subpopulations might confound phenotypic and

Brain-based decoding of mentally imagined film clips and sounds reveals experience-based information patterns in film professionals.

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de Borst, Aline W; Valente, Giancarlo; Jääskeläinen, Iiro P; Tikka, Pia

2016-04-01

In the perceptual domain, it has been shown that the human brain is strongly shaped through experience, leading to expertise in highly-skilled professionals. What has remained unclear is whether specialization also shapes brain networks underlying mental imagery. In our fMRI study, we aimed to uncover modality-specific mental imagery specialization of film experts. Using multi-voxel pattern analysis we decoded from brain activity of professional cinematographers and sound designers whether they were imagining sounds or images of particular film clips. In each expert group distinct multi-voxel patterns, specific for the modality of their expertise, were found during classification of imagery modality. These patterns were mainly localized in the occipito-temporal and parietal cortex for cinematographers and in the auditory cortex for sound designers. We also found generalized patterns across perception and imagery that were distinct for the two expert groups: they involved frontal cortex for the cinematographers and temporal cortex for the sound designers. Notably, the mental representations of film clips and sounds of cinematographers contained information that went beyond modality-specificity. We were able to successfully decode the implicit presence of film genre from brain activity during mental imagery in cinematographers. The results extend existing neuroimaging literature on expertise into the domain of mental imagery and show that experience in visual versus auditory imagery can alter the representation of information in modality-specific association cortices. Copyright © 2016 Elsevier Inc. All rights reserved.

The dynamic interplay of plasma membrane domains and cortical microtubules in secondary cell wall patterning

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Yoshihisa eOda

2013-12-01

Full Text Available Patterning of the cellulosic cell wall underlies the shape and function of plant cells. The cortical microtubule array plays a central role in the regulation of cell wall patterns. However, the regulatory mechanisms by which secondary cell wall patterns are established through cortical microtubules remain to be fully determined. Our recent study in xylem vessel cells revealed that a mutual inhibitory interaction between cortical microtubules and distinct plasma membrane domains leads to distinctive patterning in secondary cell walls. Our research revealed that the recycling of active and inactive ROP proteins by a specific GAP and GEF pair establishes distinct de novo plasma membrane domains. Active ROP recruits a plant-specific microtubule-associated protein, MIDD1, which mediates the mutual interaction between cortical microtubules and plasma membrane domains. In this mini review, we summarize recent research regarding secondary wall patterning, with a focus on the emerging interplay between plasma membrane domains and cortical microtubules through MIDD1 and ROP.

Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera.

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Meganathan, P R; Pagan, Heidi J T; McCulloch, Eve S; Stevens, Richard D; Ray, David A

2012-01-15

Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats: Corynorhinus rafinesquii, Lasiurus borealis and Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera. C. rafinesquii, L. borealis and A. lituratus mitochondrial genomes are 16438 bp, 17048 bp and 16709 bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes. Copyright © 2011 Elsevier B.V. All rights reserved.

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer.

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Kim, Jung H; Dhanasekaran, Saravana M; Prensner, John R; Cao, Xuhong; Robinson, Daniel; Kalyana-Sundaram, Shanker; Huang, Christina; Shankar, Sunita; Jing, Xiaojun; Iyer, Matthew; Hu, Ming; Sam, Lee; Grasso, Catherine; Maher, Christopher A; Palanisamy, Nallasivam; Mehra, Rohit; Kominsky, Hal D; Siddiqui, Javed; Yu, Jindan; Qin, Zhaohui S; Chinnaiyan, Arul M

2011-07-01

Beginning with precursor lesions, aberrant DNA methylation marks the entire spectrum of prostate cancer progression. We mapped the global DNA methylation patterns in select prostate tissues and cell lines using MethylPlex-next-generation sequencing (M-NGS). Hidden Markov model-based next-generation sequence analysis identified ∼68,000 methylated regions per sample. While global CpG island (CGI) methylation was not differential between benign adjacent and cancer samples, overall promoter CGI methylation significantly increased from ~12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues, respectively (P-value prostate tissues, 2481 differentially methylated regions (DMRs) are cancer-specific, including numerous novel DMRs. A novel cancer-specific DMR in the WFDC2 promoter showed frequent methylation in cancer (17/22 tissues, 6/6 cell lines), but not in the benign tissues (0/10) and normal PrEC cells. Integration of LNCaP DNA methylation and H3K4me3 data suggested an epigenetic mechanism for alternate transcription start site utilization, and these modifications segregated into distinct regions when present on the same promoter. Finally, we observed differences in repeat element methylation, particularly LINE-1, between ERG gene fusion-positive and -negative cancers, and we confirmed this observation using pyrosequencing on a tissue panel. This comprehensive methylome map will further our understanding of epigenetic regulation in prostate cancer progression.

Read/write characteristics of a new type of bit-patterned-media using nano-patterned glassy alloy

International Nuclear Information System (INIS)

Takenaka, Kana; Saidoh, Noriko; Nishiyama, Nobuyuki; Ishimaru, Manabu; Futamoto, Masaaki; Inoue, Akihisa

2012-01-01

The paper reports a feasibility study of new type bit-patterned-media using a nano-patterned glassy alloy template for ultra-high density hard disk applications. The prototype bit-patterned-media was prepared using a nano-hole array pattern fabricated on a Pd-based glassy alloy thin film and a Co/Pd multilayered film filled in the nano-holes. The prepared prototype bit-patterned-media had a smooth surface and isolated Co/Pd multilayer magnetic dots, where the average dot diameter, the average dot pitch and the average dot height were 30, 60 and 19 nm, respectively. MFM (magnetic force microscope) observation revealed that each dot was magnetized in a perpendicular direction and the magnetization could reverse when an opposite magnetic field was applied. Static read/write tester measurements showed that repeated writing and reading on isolated magnetic dots were possible in combination with conventional magnetic heads and high-accuracy positioning technologies. The present study indicates that the new type of bit-patterned-media composed of nano-hole arrays fabricated on glassy alloy film template and Co/Pd multilayer magnetic dots are promising for applications to next generation ultra-high density hard disk drives. - Highlights: ► Prototype BPM using a nano-hole array pattern of imprinted Pd-based glassy alloy thin film and Co/Pd multilayered film was set. ► The prototype BPM has smooth surface and isolated Co/Pd multilayer magnetic dots with an average dot diameter of 30 nm. ► Dots acted as perpendicular magnetic dot and were able to read, erase and write in a row by a usual perpendicular magnetic head.

Lifetime, turnover time, and fast magnetic field regeneration in random flows

International Nuclear Information System (INIS)

Tanner, S. E. M.

2007-01-01

The fast dynamo is thought to be relevant in the regeneration of magnetic fields in astrophysics where the value of the magnetic Reynolds number (Rm) is immense. The fast dynamo picture is one in which chaotic flows provide a mechanism for the stretching of magnetic field lines. Furthermore, a cascade of energy down to small scales results in intermittent regions of a small-scale, intense magnetic field. Given this scenario it is natural to invoke the use of kinematic random flows in order to understand field regeneration mechanisms better. Here a family of random flows is used to study the effects that L, the lifetime of the cell, and τ, the turnover time of the cell, may have on magnetic field regeneration. Defining the parameter Γ=L/τ, it has been varied according to Γ>1, Γ<1, Γ∼O(1). In the kinematic regime, dynamo growth rates and Lyapunov exponents are examined at varying values of Rm. The possibility of fast dynamo action is considered. In the nonlinear regime, magnetic and kinetic energies are examined. Results indicate that there does appear to be a relationship between Γ and dynamo efficiency. In particular, the most efficient dynamos seem to operate at lower values of Γ

Atypical sonographic patterns of fibroadenoma of the breast : pathologic correlation

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Kook, Shin Ho; Kim, Myung Sook; Pae, Won Kil [Kangbuk Samsung Hospital, Sungkyunkwan Univ. College of Medicine, Seoul (Korea, Republic of)

1999-03-01

To correlate the atypical sonographic patterns of fibroadenoma of the breast with the pathologic findings. Among 203 surgically proven 43 which were sonographically atypical fibroadenomas, were retrospectively reviewed. The diagnostic criteria for atypical variety, as seen on sonography, were an ill-defined margin, microlobulated or irregular shape, heterogeneous internal echo-pattern, posterior shadowing, microcalcification, and clefts. The atypical sonographic patterns of these 43 fibroadenomas were analysed and compared with the pathologic findings. Among 43 lesions, ill-defined margins or irregular shapes were seen in 15 cases, heterogeneous internal echo-patterns in 27, posterior attenuation in nine, and clefts in seven. Thirty-seven (86%) of the 43 were predominantly ductal or had a mixed ductal and stromal component. Eleven (73.3%) of fifteen ill-defined margin or irregular shaped lesions were caused by interdigitation of surrounding normal breast parenchyma and mass. Twenty two (81.5%) of 27 heterogeneous internal echo-pat-terns were related to dilated ducts, phyllodes features, collagen bundles, adenosis, microcalcification, or fat vacuoles. Eight (88.9%) of nine posterior attenuations were caused by collagen bundles, microcalcification, ductal proliferation or dilatation. All seven cases showing clefts revealed phyllodes features and dilated ducts. Most atypical fibroadenomas had a predominantly ductal or mixed component. Ill-defined margin or irregular shape was mainly due to interdigitation of normal surrounding parenchyma. Variable histologic features were related to the heterogeneous internal echo-pattern, posterior shadowing, and the clefts revealed by atypical sonographic findings.

Atypical sonographic patterns of fibroadenoma of the breast : pathologic correlation

International Nuclear Information System (INIS)

Kook, Shin Ho; Kim, Myung Sook; Pae, Won Kil

1999-01-01

To correlate the atypical sonographic patterns of fibroadenoma of the breast with the pathologic findings. Among 203 surgically proven 43 which were sonographically atypical fibroadenomas, were retrospectively reviewed. The diagnostic criteria for atypical variety, as seen on sonography, were an ill-defined margin, microlobulated or irregular shape, heterogeneous internal echo-pattern, posterior shadowing, microcalcification, and clefts. The atypical sonographic patterns of these 43 fibroadenomas were analysed and compared with the pathologic findings. Among 43 lesions, ill-defined margins or irregular shapes were seen in 15 cases, heterogeneous internal echo-patterns in 27, posterior attenuation in nine, and clefts in seven. Thirty-seven (86%) of the 43 were predominantly ductal or had a mixed ductal and stromal component. Eleven (73.3%) of fifteen ill-defined margin or irregular shaped lesions were caused by interdigitation of surrounding normal breast parenchyma and mass. Twenty two (81.5%) of 27 heterogeneous internal echo-pat-terns were related to dilated ducts, phyllodes features, collagen bundles, adenosis, microcalcification, or fat vacuoles. Eight (88.9%) of nine posterior attenuations were caused by collagen bundles, microcalcification, ductal proliferation or dilatation. All seven cases showing clefts revealed phyllodes features and dilated ducts. Most atypical fibroadenomas had a predominantly ductal or mixed component. Ill-defined margin or irregular shape was mainly due to interdigitation of normal surrounding parenchyma. Variable histologic features were related to the heterogeneous internal echo-pattern, posterior shadowing, and the clefts revealed by atypical sonographic findings

Accurate powder patterns and new spectral shape in orthorrombic symmetry

International Nuclear Information System (INIS)

Gonzalez-Tovany, L.

1991-01-01

The shape of the powder pattern of the center resonance line (M= 1/2 ↔ -1/2) for electron paramagnetic resonance (EPR) in orthorhombic symmetry, or nuclear magnetic resonance (NMR) with quadrupole interaction, is determined for all values of the crystal field symmetry parameter N by means of a general analytical method developed by Beltran-Lopez and Castro-Tello. Analytical functions in terms of elliptical integrals are obtained which are good approximations to the true powder pattern except in a narrow region around the field value corresponding to E=-2n 2 /3. numerical gaussian quadrature of the powder pattern from the single-variable integral arising in the analytical method is shown to be a very efficient semianalytical method of calculation for computer work, being much smoother and requiring only a few seconds of CPU time versus the several minutes needed with the grid of the Monte Carlo methods. The semianalytical powder patterns reveal the existence of a previous unknown EPR spectral feature in orthorhombic symmetry resembling a divergence. This feature which should appear at E=-2n 2 /3 for asymmetry parameter values near N=√ of 2/3, is hidden in the experimental spectra by the broadening effect of the linewidth of the individual crystallites. Comparison of experimental and simulated spectra obtained by convoluting powder patterns with first-derivate lorentzian lineshapes of convenient width are also shown. Semianalytical spectra are much smoother than Monte Carlo simulated spectra, revealing finer spectral features. (Author)

Planetary science. Low-altitude magnetic field measurements by MESSENGER reveal Mercury's ancient crustal field.

Science.gov (United States)

Johnson, Catherine L; Phillips, Roger J; Purucker, Michael E; Anderson, Brian J; Byrne, Paul K; Denevi, Brett W; Feinberg, Joshua M; Hauck, Steven A; Head, James W; Korth, Haje; James, Peter B; Mazarico, Erwan; Neumann, Gregory A; Philpott, Lydia C; Siegler, Matthew A; Tsyganenko, Nikolai A; Solomon, Sean C

2015-05-22

Magnetized rocks can record the history of the magnetic field of a planet, a key constraint for understanding its evolution. From orbital vector magnetic field measurements of Mercury taken by the MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) spacecraft at altitudes below 150 kilometers, we have detected remanent magnetization in Mercury's crust. We infer a lower bound on the average age of magnetization of 3.7 to 3.9 billion years. Our findings indicate that a global magnetic field driven by dynamo processes in the fluid outer core operated early in Mercury's history. Ancient field strengths that range from those similar to Mercury's present dipole field to Earth-like values are consistent with the magnetic field observations and with the low iron content of Mercury's crust inferred from MESSENGER elemental composition data. Copyright © 2015, American Association for the Advancement of Science.

Long-term results of 2 adjuvant trials reveal differences in chemosensitivity and the pattern of metastases between colon cancer and rectal cancer.

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Kornmann, Marko; Staib, Ludger; Wiegel, Thomas; Kron, Martina; Henne-Bruns, Doris; Link, Karl-Heinrich; Formentini, Andrea

2013-03-01

Two identical randomized controlled trials designed to optimize adjuvant treatment of colon cancer (CC) (n =855) and rectal cancer (RC) (n = 796) were performed. Long-term evaluation confirmed that the addition of folinic acid (FA) to 5-fluorouracil (5-FU) improved 7-year overall survival (OS) in CC but not in RC and revealed different patterns of recurrence in patients with CC and those with RC. Our aim was to compare long-term results of adjuvant treatment of colon cancer (CC) and rectal cancer (RC). Adjuvant chemotherapy of CC improved overall survival (OS), whereas that of RC remained at the level achieved by 5-fluorouracil (5-FU). We separately conducted 2 identically designed adjuvant trials in CC and RC. Patients were assigned to adjuvant chemotherapy with 5-FU alone, 5-FU + folinic acid (FA), or 5-FU + interferon-alfa. The first study enrolled patients with stage IIb/III CC, and the second study enrolled patients with stage II/III RC. All patients with RC received postoperative irradiation. Median follow-up for all patients with CC (n = 855) and RC (n = 796) was 4.9 years. The pattern and frequency of recurrence differed significantly, especially lung metastases, which occurred more frequently in RC (12.7%) than in CC (7.3%; P < .001). Seven-year OS rates for 5-FU, 5-FU + FA, and 5-FU + IFN-alfa were 54.1% (95% confidence interval [CI], 46.5-61.0), 66.8% (95% CI, 59.4-73.1), and 56.7% (95% CI, 49.3-63.4) in CC and 50.6% (95% CI, 43.0-57.7), 56.3% (95% CI, 49.4-62.7), and 54.8% (95% CI, 46.7-62.2) in RC, respectively. A subgroup analysis pointed to a reduced local recurrence (LR) rate and an increased OS by the addition of FA in stage II RC (n = 271) but not in stage III RC (n = 525). FA increased 7-year OS by 12.7 percentage points in CC but was not effective in RC. Based on these results and the pattern of metastases, our results suggest that the chemosensitivity of CC and RC may be different. Strategies different from those used in CC may be successful to

SMRT Sequencing Revealed Mitogenome Characteristics and Mitogenome-Wide DNA Modification Pattern in Ophiocordyceps sinensis.

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Kang, Xincong; Hu, Liqin; Shen, Pengyuan; Li, Rui; Liu, Dongbo

2017-01-01

Single molecule, real-time (SMRT) sequencing was used to characterize mitochondrial (mt) genome of Ophiocordyceps sinensis and to analyze the mt genome-wide pattern of epigenetic DNA modification. The complete mt genome of O. sinensis , with a size of 157,539 bp, is the fourth largest Ascomycota mt genome sequenced to date. It contained 14 conserved protein-coding genes (PCGs), 1 intronic protein rps3 , 27 tRNAs and 2 rRNA subunits, which are common characteristics of the known mt genomes in Hypocreales. A phylogenetic tree inferred from 14 PCGs in Pezizomycotina fungi supports O. sinensis as most closely related to Hirsutella rhossiliensis in Ophiocordycipitaceae. A total of 36 sequence sites in rps3 were under positive selection, with dN/dS >1 in the 20 compared fungi. Among them, 16 sites were statistically significant. In addition, the mt genome-wide base modification pattern of O. sinensis was determined in this study, especially DNA methylation. The methylations were located in coding and uncoding regions of mt PCGs in O. sinensis , and might be closely related to the expression of PCGs or the binding affinity of transcription factor A to mtDNA. Consequently, these methylations may affect the enzymatic activity of oxidative phosphorylation and then the mt respiratory rate; or they may influence mt biogenesis. Therefore, methylations in the mitogenome of O. sinensis might be a genetic feature to adapt to the cold and low PO 2 environment at high altitude, where O. sinensis is endemic. This is the first report on epigenetic modifications in a fungal mt genome.

Postnatal development of cerebellar zones revealed by neurofilament heavy chain protein expression

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Joshua J White

2013-05-01

Full Text Available The cerebellum is organized into parasagittal zones that control sensory-motor behavior. Although the architecture of adult zones is well understood, very little is known about how zones emerge during development. Understanding the process of zone formation is an essential step towards unraveling how circuits are constructed to support specific behaviors. Therefore, we focused this study on postnatal development to determine the spatial and temporal changes that establish zonal patterns during circuit formation. We used a combination of wholemount and tissue section immunohistochemistry in mice to show that the cytoskeletal protein neurofilament heavy chain (NFH is a robust marker for postnatal cerebellar zonal patterning. The patterned expression of NFH is initiated shortly after birth, and compared to the domains of several known zonal markers such as zebrin II, HSP25, neurogranin, and phospholipase Cβ4 (PLCβ4, NFH does not exhibit transient expression patterns that are typically remodeled between stages, and the adult zones do not emerge after a period of uniform expression in all lobules. Instead, we found that throughout postnatal development NFH gradually reveals distinct zones in each cerebellar lobule. The boundaries of individual NFH zones sharpen over time, as zones are refined during the second and third weeks after birth. Double labeling with neurogranin and PLCβ4 further revealed that although the postnatal expression of NFH is spatially and temporally unique, its pattern of zones respects a fundamental and well-known molecular topography in the cerebellum. The dynamics of NFH expression support the hypothesis that adult circuits are derived from an embryonic map that is refined into zones during the first three-weeks of life.

Efficient discovery of risk patterns in medical data.

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Li, Jiuyong; Fu, Ada Wai-chee; Fahey, Paul

2009-01-01

This paper studies a problem of efficiently discovering risk patterns in medical data. Risk patterns are defined by a statistical metric, relative risk, which has been widely used in epidemiological research. To avoid fruitless search in the complete exploration of risk patterns, we define optimal risk pattern set to exclude superfluous patterns, i.e. complicated patterns with lower relative risk than their corresponding simpler form patterns. We prove that mining optimal risk pattern sets conforms an anti-monotone property that supports an efficient mining algorithm. We propose an efficient algorithm for mining optimal risk pattern sets based on this property. We also propose a hierarchical structure to present discovered patterns for the easy perusal by domain experts. The proposed approach is compared with two well-known rule discovery methods, decision tree and association rule mining approaches on benchmark data sets and applied to a real world application. The proposed method discovers more and better quality risk patterns than a decision tree approach. The decision tree method is not designed for such applications and is inadequate for pattern exploring. The proposed method does not discover a large number of uninteresting superfluous patterns as an association mining approach does. The proposed method is more efficient than an association rule mining method. A real world case study shows that the method reveals some interesting risk patterns to medical practitioners. The proposed method is an efficient approach to explore risk patterns. It quickly identifies cohorts of patients that are vulnerable to a risk outcome from a large data set. The proposed method is useful for exploratory study on large medical data to generate and refine hypotheses. The method is also useful for designing medical surveillance systems.

We'll meet again: revealing distributional and temporal patterns of social contact.

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Thorsten Pachur

Full Text Available What are the dynamics and regularities underlying social contact, and how can contact with the people in one's social network be predicted? In order to characterize distributional and temporal patterns underlying contact probability, we asked 40 participants to keep a diary of their social contacts for 100 consecutive days. Using a memory framework previously used to study environmental regularities, we predicted that the probability of future contact would follow in systematic ways from the frequency, recency, and spacing of previous contact. The distribution of contact probability across the members of a person's social network was highly skewed, following an exponential function. As predicted, it emerged that future contact scaled linearly with frequency of past contact, proportionally to a power function with recency of past contact, and differentially according to the spacing of past contact. These relations emerged across different contact media and irrespective of whether the participant initiated or received contact. We discuss how the identification of these regularities might inspire more realistic analyses of behavior in social networks (e.g., attitude formation, cooperation.

Analysis of chlorophyll fluorescence reveals stage specific patterns of chloroplast-containing cells during Arabidopsis embryogenesis

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RICARDO I TEJOS

2010-01-01

Full Text Available The basic body plan of a plant is established early in embryogenesis when cells differentiate, giving rise to the apical and basal regions of the embryo. Using chlorophyll fluorescence as a marker for chloroplasts, we have detected specific patterns of chloroplast-containing cells at specific stages of embryogenesis. Non-randomly distributed chloroplast-containing cells are seen as early as the globular stage of embryogenesis in Arabidopsis. In the heart stage of embryogenesis, chloroplast containing cells are detected in epidermal cells as well as a central region of the heart stage embryo, forming a triangular septum of chloroplast-containing cells that divides the embryo into three equal sectors. Torpedo stage embryos have chloroplast-containing epidermal cells and a central band of chloroplast-containing cells in the cortex layer, just below the shoot apical meristem. In the walking-stick stage of embryogenesis, chloroplasts are present in the epidermal, cortex and endodermal cells. The chloroplasts appear reduced or absent from the provascular and columella cells of walking-stick stage embryos. These results suggest that there is a tight regulation of plastid differentiation during embryogenesis that generates specific patterns of chloroplast-containing cells in specific cell layers at specific stages of embryogenesis.

HYDRA: Revealing heterogeneity of imaging and genetic patterns through a multiple max-margin discriminative analysis framework.

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Varol, Erdem; Sotiras, Aristeidis; Davatzikos, Christos

2017-01-15

Multivariate pattern analysis techniques have been increasingly used over the past decade to derive highly sensitive and specific biomarkers of diseases on an individual basis. The driving assumption behind the vast majority of the existing methodologies is that a single imaging pattern can distinguish between healthy and diseased populations, or between two subgroups of patients (e.g., progressors vs. non-progressors). This assumption effectively ignores the ample evidence for the heterogeneous nature of brain diseases. Neurodegenerative, neuropsychiatric and neurodevelopmental disorders are largely characterized by high clinical heterogeneity, which likely stems in part from underlying neuroanatomical heterogeneity of various pathologies. Detecting and characterizing heterogeneity may deepen our understanding of disease mechanisms and lead to patient-specific treatments. However, few approaches tackle disease subtype discovery in a principled machine learning framework. To address this challenge, we present a novel non-linear learning algorithm for simultaneous binary classification and subtype identification, termed HYDRA (Heterogeneity through Discriminative Analysis). Neuroanatomical subtypes are effectively captured by multiple linear hyperplanes, which form a convex polytope that separates two groups (e.g., healthy controls from pathologic samples); each face of this polytope effectively defines a disease subtype. We validated HYDRA on simulated and clinical data. In the latter case, we applied the proposed method independently to the imaging and genetic datasets of the Alzheimer's Disease Neuroimaging Initiative (ADNI 1) study. The imaging dataset consisted of T1-weighted volumetric magnetic resonance images of 123 AD patients and 177 controls. The genetic dataset consisted of single nucleotide polymorphism information of 103 AD patients and 139 controls. We identified 3 reproducible subtypes of atrophy in AD relative to controls: (1) diffuse and extensive

Floristic Characteristics and Biodiversity Patterns in the Baishuijiang River Basin, China

Science.gov (United States)

Liu, Bing; Zhao, Wenzhi; Wen, Zijuan; Teng, Jirong; Li, Xiaohong

2009-07-01

A case study was conducted on the forest ecosystem in the Baishuijiang River basin of China to reveal the influences of environmental factors and human disturbance on the floristic characteristics and biodiversity patterns. Field surveys of the floristic composition, environmental factors, and disturbance factors were conducted along an elevation gradient, and the relationships between biodiversity pattern and environmental factors were analyzed using CCA (canonical correspondence analysis). The results showed that the floristic composition of higher plants consisted of 197 families, 796 genera, 2165 species, 19 subspecies, 239 varietas, and 12 forma, and it was characterized by the multi-geographic composition and by the transition from tropical to temperate zones. Along an elevation gradient, the variations in α and β diversity were best described by a bimodal curve, and the peak values occurred at middle elevations. The CCA indicated that the elevation had the greatest influence on the biodiversity pattern, followed by the topographic index, slope direction, slope, slope position, slope shape, and vegetation coverage. In addition, human disturbance has greatly impacted the floristic composition and biodiversity patterns, and the biodiversity indices were higher with intermediate disturbance at middle elevations compared to higher and lower disturbances at low and high elevations, respectively. This reflected a disturbance-diversity pattern and thus revealed the obvious importance to maintain the intermediate disturbance for biodiversity conservation.

What makes a pattern? Matching decoding methods to data in multivariate pattern analysis

Directory of Open Access Journals (Sweden)

Philip A Kragel

2012-11-01

Full Text Available Research in neuroscience faces the challenge of integrating information across different spatial scales of brain function. A promising technique for harnessing information at a range of spatial scales is multivariate pattern analysis (MVPA of functional magnetic resonance imaging (fMRI data. While the prevalence of MVPA has increased dramatically in recent years, its typical implementations for classification of mental states utilize only a subset of the information encoded in local fMRI signals. We review published studies employing multivariate pattern classification since the technique’s introduction, which reveal an extensive focus on the improved detection power that linear classifiers provide over traditional analysis techniques. We demonstrate using simulations and a searchlight approach, however, that nonlinear classifiers are capable of extracting distinct information about interactions within a local region. We conclude that for spatially localized analyses, such as searchlight and region of interest, multiple classification approaches should be compared in order to match fMRI analyses to the properties of local circuits.

Classroom Behavior Patterns of EMH, LD, and EH Students.

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McKinney, James D.; Forman, Susan G.

1982-01-01

Investigated whether classroom teachers could differentiate among educable mentally handicapped (EMH), learning disabled (LD), and emotionally handicapped (EH) students based on perceptions of classroom behavior patterns. Ratings from classroom behavior inventory scales revealed that EMH students were distinguished by low intelligence, creativity,…

Biodiversity, molecular ecology and phylogeography of marine sponges: patterns, implications and outlooks.

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Wörheide, Gert; Solé-Cava, Antonio M; Hooper, John N A

2005-04-01

Marine sponges are an ecologically important and highly diverse component of marine benthic communities, found in all the world's oceans, at all depths. Although their commercial potential and evolutionary importance is increasingly recognized, many pivotal aspects of their basic biology remain enigmatic. Knowledge of historical biogeographic affinities and biodiversity patterns is rudimentary, and there are still few data about genetic variation among sponge populations and spatial patterns of this variation. Biodiversity analyses of tropical Australasian sponges revealed spatial trends not universally reflected in the distributions of other marine phyla within the Indo-West Pacific region. At smaller spatial scales sponges frequently form heterogeneous, spatially patchy assemblages, with some empirical evidence suggesting that environmental variables such as light and/or turbidity strongly contribute to local distributions. There are no apparent latitudinal diversity gradients at larger spatial scales but stochastic processes, such as changing current patterns, the presence or absence of major carbonate platforms and historical biogeography, may determine modern day distributions. Studies on Caribbean oceanic reefs have revealed similar patterns, only weakly correlated with environmental factors. However, several questions remain where molecular approaches promise great potential, e.g., concerning connectivity and biogeographic relationships. Studies to date have helped to reveal that sponge populations are genetically highly structured and that historical processes might play an important role in determining such structure. Increasingly sophisticated molecular tools are now being applied, with results contributing significantly to a better understanding of poriferan microevolutionary processes and molecular ecology.

Dynamic expression reveals a two-step patterning of WUS and CLV3 during axillary shoot meristem formation in Arabidopsis.

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Xin, Wei; Wang, Zhicai; Liang, Yan; Wang, Yonghong; Hu, Yuxin

2017-07-01

Seed plants have a remarkable capability to produce axillary meristems (AM) in the leaf axils, however, the dynamic establishment of a stem cell niche in AM is largely uncharacterized. We comprehensively examined the dynamic patterning of WUSCHEL (WUS) and CLAVATA3 (CLV3), the two key marker genes defining the shoot stem cell niches, during AM formation in Arabidopsis, and we found that a two-step patterning of WUS and CLV3 occurred during AM stem cell niche establishment. Our further work on the wus and clv3 mutants implicates that such two-step patterning is likely critical for the maintenance of AM progenitor cells and the specification of AM stem cell niche. These data provide a cytological frame for how a stem cell niche is established during AM formation. Copyright © 2017 Elsevier GmbH. All rights reserved.

Spatial-temporal-spectral EEG patterns of BOLD functional network connectivity dynamics

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Lamoš, Martin; Mareček, Radek; Slavíček, Tomáš; Mikl, Michal; Rektor, Ivan; Jan, Jiří

2018-06-01

Objective. Growing interest in the examination of large-scale brain network functional connectivity dynamics is accompanied by an effort to find the electrophysiological correlates. The commonly used constraints applied to spatial and spectral domains during electroencephalogram (EEG) data analysis may leave part of the neural activity unrecognized. We propose an approach that blindly reveals multimodal EEG spectral patterns that are related to the dynamics of the BOLD functional network connectivity. Approach. The blind decomposition of EEG spectrogram by parallel factor analysis has been shown to be a useful technique for uncovering patterns of neural activity. The simultaneously acquired BOLD fMRI data were decomposed by independent component analysis. Dynamic functional connectivity was computed on the component’s time series using a sliding window correlation, and between-network connectivity states were then defined based on the values of the correlation coefficients. ANOVA tests were performed to assess the relationships between the dynamics of between-network connectivity states and the fluctuations of EEG spectral patterns. Main results. We found three patterns related to the dynamics of between-network connectivity states. The first pattern has dominant peaks in the alpha, beta, and gamma bands and is related to the dynamics between the auditory, sensorimotor, and attentional networks. The second pattern, with dominant peaks in the theta and low alpha bands, is related to the visual and default mode network. The third pattern, also with peaks in the theta and low alpha bands, is related to the auditory and frontal network. Significance. Our previous findings revealed a relationship between EEG spectral pattern fluctuations and the hemodynamics of large-scale brain networks. In this study, we suggest that the relationship also exists at the level of functional connectivity dynamics among large-scale brain networks when no standard spatial and spectral

Course-Taking Patterns of Community College Students Beginning in STEM: Using Data Mining Techniques to Reveal Viable STEM Transfer Pathways

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Wang, Xueli

2016-01-01

This research focuses on course-taking patterns of beginning community college students enrolled in one or more non-remedial science, technology, engineering, and mathematics (STEM) courses during their first year of college, and how these patterns are mapped against upward transfer in STEM fields of study. Drawing upon postsecondary transcript…

Substance Use Patterns Among Adolescents in Europe: A Latent Class Analysis.

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Göbel, Kristin; Scheithauer, Herbert; Bräker, Astrid-Britta; Jonkman, Harrie; Soellner, Renate

2016-07-28

Several researchers have investigated substance use patterns using a latent class analysis; however, hardly no studies exist on substance use patterns across countries. Adolescent substance use patterns, demographic factors, and international differences in the prevalence of substance use patterns were explored. Data from 25 European countries were used to identify patterns of adolescent (12-16 years, 50.6% female) substance use (N = 33,566). Latent class analysis revealed four substance use classes: nonusers (68%), low-alcohol users (recent use of beer, wine, and alcopops; 16.1%), alcohol users (recent use of alcohol and lifetime use of marijuana; 11.2%), and polysubstance users (recent use of alcohol, marijuana, and other illicit drugs; 4.7%). Results support a general pattern of adolescent substance use across all countries; however, the prevalence rates of use patterns vary for each country. The present research provides insight into substance use patterns across Europe by using a large international adolescent sample, multidimensional indicators and a variety of substances. Substance use patterns are helpful when targeting policy and prevention strategies.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

DEFF Research Database (Denmark)

Baillie, J. Kenneth; Bretherick, Andrew; Haley, Christopher S.

2018-01-01

Genetic variants underlying complex traits, including disease susceptibility, are enriched within the transcriptional regulatory elements, promoters and enhancers. There is emerging evidence that regulatory elements associated with particular traits or diseases share similar patterns of transcrip...

Mechanism of drag reduction for circular cylinders with patterned surface

International Nuclear Information System (INIS)

Butt, U.; Jehring, L.; Egbers, C.

2014-01-01

Highlights: • Reduced drag of patterned cylinders over a wide range of Re numbers. • Hexagonal patterns cannot be characterized as roughness structures. • Hexagonal bumps affect the flow like spherical dimples of smaller k/d ratio do. • Main separation is delayed caused by a partial separation. • Angle of a separation line is not constant over the length of cylinder. -- Abstract: In this paper, the flow over cylinders with a patterned surface (k/d = 1.98 × 10 −2 ) is investigated in a subsonic wind tunnel over Reynolds numbers ranging from 3.14 × 10 4 to 2.77 × 10 5 by measuring drag, flow visualization and measuring velocity profiles above the surface of the cylinders, to observe the effect of hexagonal patterns on the flow of air. These patterns can also be referred as hexagonal dimples or bumps depending on their configuration. The investigations revealed that a patterned cylinder with patterns pressed outwards has a drag coefficient of about 0.65 times of a smooth one. Flow visualization techniques including surface oil-film technique and velocity profile measurement were employed to elucidate this effect, and hence present the mechanism of drag reduction. The measurement of velocity profiles using hot-wire anemometry above the surface reveal that a hexagonal bump cause local separation generating large turbulence intensity along the separating shear layer. Due to this increased turbulence, the flow reattaches to the surface with higher momentum and become able to withstand the pressure gradient delaying the main separation significantly. Besides that, the separation does not appear to occur in a straight line along the length of the cylinder as in case of most passive drag control methods, but follow exactly the hexagonal patterns forming a wave with its crest at 115° and trough at 110°, in contrast to the laminar separation line at 85° for a smooth cylinder

Inheritanceof seed coat colour pattern in cowpea [ Vigna ...

African Journals Online (AJOL)

Hybridization experiments were conducted in the screen house to study the inheritance of seed colour pattern in cowpea. Cowpea varieties of varying seed coat colour were used as parents for the investigation. Parental, F1 and segregating F2 populations were raised in the field and the study revealed that self colour ...

Spatiotemporal Wave Patterns: Information Dynamics

Energy Technology Data Exchange (ETDEWEB)

Mikhail Rabinovich; Lev Tsimring

2006-01-20

Pattern formation has traditionally been studied in non-equilibrium physics from the viewpoint of describing the basic structures and their interactions. While this is still an important area of research, the emphasis in the last few years has shifted towards analysis of specific properties of patterns in various complex media. For example, diverse and unexpected phenomena occur in neuro-like media that are characterized by highly non-trivial local dynamics. We carried out an active research program on analysis of spatio-temporal patterns in various physical systems (convection, oscillating fluid layer, soap film), as well as in neuro-like media, with an emphasis on informational aspects of the dynamics. Nonlinear nonequilibrium media and their discrete analogs have a unique ability to represent, memorize, and process the information contained in spatio-temporal patterns. Recent neurophysiological experiments demonstrated a certain universality of spatio-temporal representation of information by neural ensembles. Information processing is also revealed in the spatio-temporal dynamics of cellular patterns in nonequilibrium media. It is extremely important for many applications to study the informational aspects of these dynamics, including the origins and mechanisms of information generation, propagation and storage. Some of our results are: the discovery of self-organization of periodically oscillatory patterns in chaotic heterogeneous media; the analysis of the propagation of the information along a chaotic media as function of the entropy of the signal; the analysis of wave propagation in discrete non-equilibrium media with autocatalytic properties, which simulates the calcium dynamics in cellular membranes. Based on biological experiments we suggest the mechanism by which the spatial sensory information is transferred into the spatio-temporal code in the neural media. We also found a new mechanism of self-pinning in cellular structures and the related phenomenon

Acoustic tweezers: patterning cells and microparticles using standing surface acoustic waves (SSAW).

Science.gov (United States)

Shi, Jinjie; Ahmed, Daniel; Mao, Xiaole; Lin, Sz-Chin Steven; Lawit, Aitan; Huang, Tony Jun

2009-10-21

Here we present an active patterning technique named "acoustic tweezers" that utilizes standing surface acoustic wave (SSAW) to manipulate and pattern cells and microparticles. This technique is capable of patterning cells and microparticles regardless of shape, size, charge or polarity. Its power intensity, approximately 5x10(5) times lower than that of optical tweezers, compares favorably with those of other active patterning methods. Flow cytometry studies have revealed it to be non-invasive. The aforementioned advantages, along with this technique's simple design and ability to be miniaturized, render the "acoustic tweezers" technique a promising tool for various applications in biology, chemistry, engineering, and materials science.

Dissipative neurodynamics in perception forms cortical patterns that are stabilized by vortices

Science.gov (United States)

Freeman, Walter J.; Vitiello, Giuseppe

2009-06-01

In the engagement of the brain with its environment, large-scale neural interactions in brain dynamics create a mesoscopic order parameter, which is evaluated by measuring brain waves (electrocorticogram, ECoG). Such large-scale interactions emerge from the background activity of the brain that is sustained by mutual excitation in cortical populations and manifest in spatiotemporal patterns of neural activity. Band pass filtering reveals beats in ECoG power that recur at theta rates (3-7 Hz) as null spikes in log10 power. The order parameter transiently approaches zero, and the microscopic activity is both disordered and symmetric. As the null spikes terminate, the order parameter resurges and imposes a mesoscopic spatial pattern of ECoG amplitude modulation that then governs the microscopic gamma activity and retrieves the memory of a stimulus. The brain waves reveal a spatial pattern of phase modulation in the form of a cone. The dissipative many-body model of brain dynamics describes these phase cones as vortices, which are initiated by the null spikes, and which stabilize the amplitude modulated patterns embedded in the turbulent neural noise from which they emerge.

Dissipative neurodynamics in perception forms cortical patterns that are stabilized by vortices

International Nuclear Information System (INIS)

Freeman, Walter J; Vitiello, Giuseppe

2009-01-01

In the engagement of the brain with its environment, large-scale neural interactions in brain dynamics create a mesoscopic order parameter, which is evaluated by measuring brain waves (electrocorticogram, ECoG). Such large-scale interactions emerge from the background activity of the brain that is sustained by mutual excitation in cortical populations and manifest in spatiotemporal patterns of neural activity. Band pass filtering reveals beats in ECoG power that recur at theta rates (3-7 Hz) as null spikes in log 10 power. The order parameter transiently approaches zero, and the microscopic activity is both disordered and symmetric. As the null spikes terminate, the order parameter resurges and imposes a mesoscopic spatial pattern of ECoG amplitude modulation that then governs the microscopic gamma activity and retrieves the memory of a stimulus. The brain waves reveal a spatial pattern of phase modulation in the form of a cone. The dissipative many-body model of brain dynamics describes these phase cones as vortices, which are initiated by the null spikes, and which stabilize the amplitude modulated patterns embedded in the turbulent neural noise from which they emerge.

Realization of diverse displays for multiple color patterns on metal surfaces

International Nuclear Information System (INIS)

Li, Guoqiang; Li, Jiawen; Hu, Yanlei; Zhang, Chenchu; Li, Xiaohong; Chu, Jiaru; Huang, Wenhao

2014-01-01

Highlights: • We have demonstrated that the combined influence of incident white light angle and the ripples orientation on the diversity of structural colors. • Our investigation revealed that multi-patterns constituted by ripples with different orientations could be precisely designed on metal surfaces. • The diverse display for the desired ones can be realized by exquisitely varying the incident light angle and rotating sample angle. - Abstract: Enhanced colors can be formed when white light is irradiated on the surface ripples induced by femtosecond laser. In this paper, we have demonstrated the ability to display the diverse colors by simultaneously adjusting the incident white light angle and the ripples orientation. Furthermore, our investigation revealed that multi-patterns constituted by ripples with different orientations could be designed on metal surfaces. The diverse display for the desired ones can be realized by exquisitely varying the incident light angle and rotating sample angle. More interestingly, it is found that, although the same patterns could be displayed under different conditions, the colors might be different. These findings can provide a novel method to carry and identify high quantity of information, which may find potential applications in the fields of information storage, identifying codes and anti-counterfeiting patterns