Generalized threshold resummation in inclusive DIS and semi-inclusive electron-positron annihilation

International Nuclear Information System (INIS)

Almasy, A.A.; Lo Presti, N.A.; Vogt, A.

2015-11-01

We present analytic all-order results for the highest three threshold logarithms of the space-like and time-like off-diagonal splitting functions and the corresponding coefficient functions for inclusive deep-inelastic scattering (DIS) and semi-inclusive e + e - annihilation. All these results, obtained through an order-by-order analysis of the structure of the corresponding unfactorized quantities in dimensional regularization, can be expressed in terms of the Bernoulli functions introduced by one of us and leading-logarithmic soft-gluon exponentials. The resulting numerical corrections are small for the splitting functions but large for the coefficient functions. In both cases more terms in the threshold expansion need to be determined in order to arrive at quantitatively reliable results.

Some Remarks on Methods of QCD Analysis of Polarized DIS Data

CERN Document Server

Leader, Elliot; Stamenov, Dimiter B

2009-01-01

The results on polarized parton densities (PDFs) obtained using different methods of QCD analysis of the present polarized DIS data are discussed. Their dependence on the method used in the analysis, accounting or not for the kinematic and dynamic 1/Q^2 corrections to spin structure function g_1, is demonstrated. It is pointed out that the precise data in the preasymptotic region require a more careful matching of the QCD predictions to the data in this region in order to determine the polarized PDFs correctly.

Geometrical scaling in charm structure function ratios

International Nuclear Information System (INIS)

Boroun, G.R.; Rezaei, B.

2014-01-01

By using a Laplace-transform technique, we solve the next-to-leading-order master equation for charm production and derive a compact formula for the ratio R c =F L cc ¯ /F 2 cc ¯ , which is useful for extracting the charm structure function from the reduced charm cross section, in particular, at DESY HERA, at small x. Our results show that this ratio is independent of x at small x. In this method of determining the ratios, we apply geometrical scaling in charm production in deep inelastic scattering (DIS). Our analysis shows that the renormalization scales have a sizable impact on the ratio R c at high Q 2 . Our results for the ratio of the charm structure functions are in a good agreement with some phenomenological models

Diffractive DIS: Where are we?

International Nuclear Information System (INIS)

Nikolaev, N.N.

2001-01-01

A brief review of the modern QCD theory of diffractive DIS is given. The recent progress has been remarkably rapid, all the principal predictions from the color dipole approach to diffraction - the (Q 2 + m V 2 ) scaling, the pattern of SCHNC, shrinkage of the diffraction cone in hard diffractive DIS, the strong impact of longitudinal gluons in inclusive J/Ψ production at Tevatron - have been confirmed experimentally

Pengaruh penggunaan modifikasi DIS Tipe 2 terhadap gas buang kendaraan

Directory of Open Access Journals (Sweden)

I GNP Tenaya

2018-01-01

Full Text Available Abstrak Sistem pengapian adalah salah satu faktor yang mempengaruhi proses pembakaran didalam mesin. Gas buang adalah salah satu indikator untuk mengetahui proses pembakaran dan performa mesin. Pengapian dengan modifikasi DIS tipe 2 sistemnya adalah setiap silinder ditangani dengan satu koil pengapian dan tidak menggunakan kabel tegangan tinggi serta titik persambungan yang dapat mengurangi energi pengapian pada area tegangan tinggi. Untuk membuktikan kebenarannya terhadap proses pembakaran maka dilakukan penelitian pengaruh penggunaan modifikasi DIS tipe 2 terhadap gas buang kendaraan. Dalam penelitian ini digunakan kendaraan 1300 cc. Pada putaran 800 rpm sampai 3300 rpm yang menggunakan DIS tipe 2 dan modifikasi DIS tipe 2. Data yang diamati adalah kadar CO, CO2, HC dan O2.Dari hasil penelitian didapatkan pengapian dengan menggunakan modifikasi DIS tipe 2 kadar gas buang CO dan HC lebih rendah sedangkan kadar gas buang O2 dan CO2lebih tinggi jika dibandingkan dengan pengapian menggunakanDIS tipe 2. Kata kunci: DIS Tipe 2, Modifikasi, Gas Buang Abstract The ignition system is a factor which influence the combustion process of engine. Exhaust gas is one indicator to know about a combustion and engine performance. The modification ignition of DIS type 2 system is each cylinder handlled using an ignition coil and it is without the high tenssion cord and also splace points which can be ignition energy decrease in high voltage area. To approve that truth about the combustion process is done by research for the effect of modification DIS type 2 toward vehicle exhaust gas.This research use vehicle in 1300 cc. On the circle about 800 rpm until 3300 rpm which using DIS type 2 and DIS type 2 modification. The data by observed was degree of CO, CO2, HC and O2.From this research, that by DIS type 2 modification ignition, degree of CO and HC was decrease while degree of O2 and CO2 was increase if compare by DIS type 2 ignition. Keywords: DIS Type 2

Talking (and Not Talking) about Race, Social Class and Dis/Ability: Working Margin to Margin

Science.gov (United States)

Ferri, Beth A.; Connor, David J.

2014-01-01

In this article we examine some of the omnipresent yet unacknowledged discourses of social and economic disadvantage and dis/ability within schools in the US. First, we document ways that social class, race, and dis/ability function within schools to further disadvantage and exclude already marginalized students. Next, we show how particular ways…

Regge analysis of diffractive and leading baryon structure functions from deep inelastic scattering

International Nuclear Information System (INIS)

Batista, M.; Covolan, R.J.M.; Montanha, J.

2002-01-01

In this paper we present a combined analysis of the H1 data on leading baryon and diffractive structure functions from DIS, which are handled as two components of the same semi-inclusive process. The available structure function data are analyzed in a series of fits in which three main exchanges are taken into account: the Pomeron, Reggeon, and pion. For each of these contributions, Regge factorization of the correspondent structure function is assumed. By this procedure, we extract information about the interface between the diffractive, Pomeron-dominated, region and the leading proton spectrum, which is mostly ruled by secondary exchanges. One of the main results is that the relative Reggeon contribution to the semi-inclusive structure function is much smaller than the one obtained from an analysis of the diffractive structure function alone

SketchingDIS: Hand-drawn Sketching in HCI

DEFF Research Database (Denmark)

Lewis, Makayla; Sturdee, Miriam; Alexander, Jason

2017-01-01

DIS: Hand-drawn sketching in HCI' SketchingDIS.wordpress.com, a one-day workshop will bring together researchers from various disciplines that have incorporated hand-drawn sketching into their everyday research practice, to share knowledge and methodologies, generate ideas, practice collaborative sketching...

Polarized 3 parton production in inclusive DIS at small x

Energy Technology Data Exchange (ETDEWEB)

Ayala, Alejandro [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Apartado Postal 70-543, Ciudad de México 04510 (Mexico); Centre for Theoretical and Mathematical Physics, and Department of Physics, University of Cape Town, Rondebosch 7700 (South Africa); Hentschinski, Martin, E-mail: hentschinski@correo.nucleares.unam.mx [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Apartado Postal 70-543, Ciudad de México 04510 (Mexico); Facultad de Ciencias Físico Matemáticas, Benemérita Universidad Autónoma de Puebla, Puebla 1152 (Mexico); Jalilian-Marian, Jamal [Department of Natural Sciences, Baruch College, CUNY, 17 Lexington Avenue, New York, NY 10010 (United States); CUNY Graduate Center, 365 Fifth Avenue, New York, NY 10016 (United States); Tejeda-Yeomans, Maria Elena [Departamento de Física, Universidad de Sonora, Boulevard Luis Encinas J. y Rosales, Colonia Centro, Hermosillo, Sonora 83000 (Mexico)

2016-10-10

Azimuthal angular correlations between produced hadrons/jets in high energy collisions are a sensitive probe of the dynamics of QCD at small x. Here we derive the triple differential cross section for inclusive production of 3 polarized partons in DIS at small x. The target proton or nucleus is described using the Color Glass Condensate (CGC) formalism. The resulting expressions are used to study azimuthal angular correlations between produced partons in order to probe the gluon structure of the target hadron or nucleus. Our analytic expressions can also be used to calculate the real part of the Next to Leading Order (NLO) corrections to di-hadron production in DIS by integrating out one of the three final state partons.

Polarized 3 parton production in inclusive DIS at small x

International Nuclear Information System (INIS)

Ayala, Alejandro; Hentschinski, Martin; Jalilian-Marian, Jamal; Tejeda-Yeomans, Maria Elena

2016-01-01

Azimuthal angular correlations between produced hadrons/jets in high energy collisions are a sensitive probe of the dynamics of QCD at small x. Here we derive the triple differential cross section for inclusive production of 3 polarized partons in DIS at small x. The target proton or nucleus is described using the Color Glass Condensate (CGC) formalism. The resulting expressions are used to study azimuthal angular correlations between produced partons in order to probe the gluon structure of the target hadron or nucleus. Our analytic expressions can also be used to calculate the real part of the Next to Leading Order (NLO) corrections to di-hadron production in DIS by integrating out one of the three final state partons.

Intersectional harassment and deviant embodiment among Autistic adults: (dis)ability, gender and sexuality.

Science.gov (United States)

Barnett, Jessica Penwell

2017-11-01

Harassment scholarship increasingly attends to the intersectional nature of harassment and its function within systems of domination. However, little of this work includes disability. In-depth interviews with 24 adults on the autism spectrum in the USA demonstrate the intersections of gender, sexuality and (dis)ability in the construction of deviant embodiments as targets for harassment. These intersections also shape how participants made sense of these experiences of violence. Participants' disability characteristics were often read as gender or sexual variance, with harassers relying on sexist and heterosexist constructs to frighten, demean or humiliate them for disability characteristics. Participant experiences demonstrate the cisgender basis of 'able-bodied' identity as well as the 'able-bodied' basis of cisgender and heterosexual identities and experiences. The interdependency of gender, sexuality and (dis)ability embodiment point to how it is critical for scholars and activists to account for the role of gender and heterosexist harassment in ableist oppression and disability harassment in (hetero)sexist oppression, as well as the limits of current US law enforcement structures in providing redress for harassment.

Radiological accidents: methodologies of radio nuclides dis incorporation; Accidentes radiologicos: metodologias de desincorporacion de radionuclidos

Energy Technology Data Exchange (ETDEWEB)

Jimenez F, E. A. [Universidad Autonoma del Estado de Mexico, Facultad de Medicina, Paseo Tollocan s/n, 50180 Toluca, Estado de Mexico (Mexico); Paredes G, L. [ININ, Carretera Mexico-Toluca s/n, 52750 Ocoyoacac, Estado de Mexico (Mexico); Cortes, A., E-mail: lydia.paredes@inin.gob.mx [Comision Nacional de Seguridad Nuclear y Salvaguardias, Dr. Jose Ma. Barragan No. 779, Col. Narvarte, 03020 Mexico D. F. (Mexico)

2014-08-15

Derived of the radioactive or nuclear material management, exists the risk that accidents can happen where people cases are presented with internal radioactive contamination, who will receive specialized medical care to accelerate the radioactive dis incorporation with the purpose of diminishing the absorbed dose and the associate biological effects. In this work treatments of radioactive dis incorporation were identified, in function of the radionuclide, radiation type, radioactive half life, biological half life, critical organ, ingestion duct and patient type. The factor time is decisive for the effectiveness of the selected treatment in the blockade stage (before the accident) or dis incorporation (after the accident); this factor is related with the radioactive and biological half lives. So to achieve dis incorporation efficiencies of more to 70%, the patient clinical treatment will begin before the first third of the biological half life of the radionuclide that generated the internal contamination. (Author)

On the behaviour of DIS structure function ratio R(x, Q2) at small x

International Nuclear Information System (INIS)

Kotikov, A.V.

1993-01-01

The behaviour of deep inelastic structure functions is studied at small x in the leading and next-to-leading orders of perturbation theory. The scheme-invariant analysis for the longitudinal and transverse structure functions ratio R(x, Q 2 ), is given. It is found that this ratio tends to zero asymptotically when x -> 0. (author). 12 refs.; 1 fig

Dis-Equality: Exploring the Juxtaposition of Disability and Equality

Directory of Open Access Journals (Sweden)

Bronagh Byrne

2018-03-01

Full Text Available The (inequality issues facing disabled people are extensive and long-enduring. The way(s in which equality is conceptualised has important consequences for understandings of disability. The ambiguity of what I call dis-equality theory is two-fold; the apparent failure of mainstream equality theorising in, firstly, embracing disability concepts at all, and secondly, in fully incorporating the logistics of disability, particularly in relation to the social construction of such. Practices of institutional and more complex forms of discrimination are part of those deeper structures of domination and oppression which maintain disabled people in positions of disadvantage. Everyday practices, in the ‘ordinary order of things’ (Bourdieu, 2000, continue to be misrecognised as natural and taken for granted. This article critically explores the complexity of dis-equality theorising utilising a Bourdieusian lens which explicitly incorporates complex and subtle forms of discrimination, and by examining the UN Convention on the Rights of Persons with Disabilities’ approach to equality. I argue that the way forward for dis-equality theorising in today’s rights based era must be one that considers the nuances of the ‘rules of the game’ (Young, 1990 if it is to be effective in challenging the inequalities to which disabled people have long been subject.

Polarized 3 parton production in inclusive DIS at small x

Directory of Open Access Journals (Sweden)

Alejandro Ayala

2016-10-01

Full Text Available Azimuthal angular correlations between produced hadrons/jets in high energy collisions are a sensitive probe of the dynamics of QCD at small x. Here we derive the triple differential cross section for inclusive production of 3 polarized partons in DIS at small x. The target proton or nucleus is described using the Color Glass Condensate (CGC formalism. The resulting expressions are used to study azimuthal angular correlations between produced partons in order to probe the gluon structure of the target hadron or nucleus. Our analytic expressions can also be used to calculate the real part of the Next to Leading Order (NLO corrections to di-hadron production in DIS by integrating out one of the three final state partons.

Application of the Drilling Impact Study (DIS) to Forsmark groundwaters

International Nuclear Information System (INIS)

Gascoyne, Mel; Gurban, Ioana

2008-01-01

Characterisation of a geological formation as a repository for nuclear fuel waste requires deep drilling into the bedrock to gain an understanding of the geological structure, rock types, groundwater flow and the chemical composition of groundwater and the adjacent rock. The methods of characterisation from a hydrogeochemical point of view, might be affected by the various drilling activities and techniques for determining groundwater composition have been employed so that the composition can be corrected for these activities. SKB has developed and supported the Drilling Impact Study (DIS) project in which a tracer is used as an indicator of contamination to attempt to correct the groundwater composition for dilution or contamination by surface waters. The project began about five years ago with the intention of developing a routine method for determining the extent of contamination of borehole groundwater by drilling water. The main objectives of this work were: 1. Determine the extent of drilling water contamination in permeable zones in a test borehole on the Forsmark site. 2. Correct measured chemical compositions of the groundwaters based on contamination results. 3. Provide a workable methodology for routine correction of groundwater composition. 4. Apply the modified DIS model to suitable borehole zones at the Forsmark site in a systematic fashion 5. Determine uncertainties in DIS modelling. A memorandum was prepared by describing the characteristics of borehole KFM06 and its drilling history. Estimates were made of the amount of drilling water in permeable zones in the borehole and the various approaches to applying results of DIS were described and recommendations made, with an example calculation

Functional requirements document for NASA/MSFC Earth Science and Applications Division: Data and information system (ESAD-DIS). Interoperability, 1992

Science.gov (United States)

Stephens, J. Briscoe; Grider, Gary W.

1992-01-01

These Earth Science and Applications Division-Data and Information System (ESAD-DIS) interoperability requirements are designed to quantify the Earth Science and Application Division's hardware and software requirements in terms of communications between personal and visualization workstation, and mainframe computers. The electronic mail requirements and local area network (LAN) requirements are addressed. These interoperability requirements are top-level requirements framed around defining the existing ESAD-DIS interoperability and projecting known near-term requirements for both operational support and for management planning. Detailed requirements will be submitted on a case-by-case basis. This document is also intended as an overview of ESAD-DIs interoperability for new-comers and management not familiar with these activities. It is intended as background documentation to support requests for resources and support requirements.

Dis3- and exosome subunit-responsive 3′ mRNA instability elements

International Nuclear Information System (INIS)

Kiss, Daniel L.; Hou, Dezhi; Gross, Robert H.; Andrulis, Erik D.

2012-01-01

Highlights: ► Successful use of a novel RNA-specific bioinformatic tool, RNA SCOPE. ► Identified novel 3′ UTR cis-acting element that destabilizes a reporter mRNA. ► Show exosome subunits are required for cis-acting element-mediated mRNA instability. ► Define precise sequence requirements of novel cis-acting element. ► Show that microarray-defined exosome subunit-regulated mRNAs have novel element. -- Abstract: Eukaryotic RNA turnover is regulated in part by the exosome, a nuclear and cytoplasmic complex of ribonucleases (RNases) and RNA-binding proteins. The major RNase of the complex is thought to be Dis3, a multi-functional 3′–5′ exoribonuclease and endoribonuclease. Although it is known that Dis3 and core exosome subunits are recruited to transcriptionally active genes and to messenger RNA (mRNA) substrates, this recruitment is thought to occur indirectly. We sought to discover cis-acting elements that recruit Dis3 or other exosome subunits. Using a bioinformatic tool called RNA SCOPE to screen the 3′ untranslated regions of up-regulated transcripts from our published Dis3 depletion-derived transcriptomic data set, we identified several motifs as candidate instability elements. Secondary screening using a luciferase reporter system revealed that one cassette—harboring four elements—destabilized the reporter transcript. RNAi-based depletion of Dis3, Rrp6, Rrp4, Rrp40, or Rrp46 diminished the efficacy of cassette-mediated destabilization. Truncation analysis of the cassette showed that two exosome subunit-sensitive elements (ESSEs) destabilized the reporter. Point-directed mutagenesis of ESSE abrogated the destabilization effect. An examination of the transcriptomic data from exosome subunit depletion-based microarrays revealed that mRNAs with ESSEs are found in every up-regulated mRNA data set but are underrepresented or missing from the down-regulated data sets. Taken together, our findings imply a potentially novel mechanism of m

The development and validation of the Dieting Intentions Scale (DIS).

Science.gov (United States)

Cruwys, Tegan; Platow, Michael J; Rieger, Elizabeth; Byrne, Don G

2013-03-01

This article presents information on the psychometric properties of the Dieting Intentions Scale (DIS), a new scale of dieting that predicts future behavioral efforts to lose weight. We begin by reviewing recent research indicating theoretical and empirical problems with traditional approaches to measuring dieting. The DIS addresses several of these problems by (a) focusing on naturalistic dieting behavior and (b) being future-oriented. Four validation studies are presented with a total of 741 participants. We demonstrate that the DIS has predictive utility for dieting behaviors and is positively correlated with other measures related to eating, weight, and shape. Furthermore, the DIS demonstrates discriminant validity by not being related to constructs such as self-esteem and social desirability. The DIS also has high internal consistency, with a 1-factor solution replicated with confirmatory factor analysis. The potential uses of the scale in both research and clinical settings are considered. PsycINFO Database Record (c) 2013 APA, all rights reserved.

Photon structure function fit with the xFitter framework

CERN Document Server

Schulte, Sebastian

2017-01-01

The theory of the strong interaction, Quantum Chromodynamics (QCD), is one of the main constituents of the Standard Model of elementary particle physics. Particularly interesting is the strong coupling constant αs, the only fundamental QCD parameter, which can be only determined by experimental in- vestigations. Therefore, the precise knowledge of αs has been subject of many investigations, using several different methods, like for example the Z- and τ- decays at LEP. The current world average value of αs(mZ) = 0.1172 ± 0.0020, where mZ = 91.1876 GeV denotes the mass of the Z-boson [1]. In terms of QCD, the photon offers particular interesting investigation possibilities, which can be shown by Deep Inelastic Scattering (DIS) of electrons and photons. Despite the assumption, that the photon is a point-like particle, hadron production can be observed. This is leading to the introduction of structure functions, as for DIS electron-nucleon scattering and can be explained by quantum fluctuations due to Hei...

The x rescaling parameter' formula of the extended x rescaling model and the nuclear effect l-A DIS process

International Nuclear Information System (INIS)

Gao Yonghua; He Mingzhong; Duan Chungui

2003-01-01

The authors present an x rescaling parameters' formula for partons in the extended x rescaling model, where we have established the connection between the rescaling parameter and the mean binding energy. Using x rescaling parameters obtained by the x rescaling parameters' formula, we calculate the average nucleon structure function ratio of DIS process in l-A (Al, Ca, Pb) collision to l-C collision respectively. The result is in good agreement with experimental data

Do you know DIS? a novel passive individual dosimeterd. Direct Ion Storage dosimeter DIS-1 officially approved in Switzerland

International Nuclear Information System (INIS)

Fiechtner, A.; Wernli, C.

2001-01-01

For individual monitoring film and TLD are the most often used types of dosimeters. On a smaller scale phosphate glasses and detectors based on optically stimulated luminescence (OSL) are also in use. As a new addition to the list of available personnel dosimeters the direct ion storage (DIS) system became legally approved for the first time in Switzerland. At the Paul Scherrer Institute (PSI) the RADOS dosimetry system DIS-1 is in official use since beginning of 2001. (orig.) [de

DisEpi: Compact Visualization as a Tool for Applied Epidemiological Research.

Science.gov (United States)

Benis, Arriel; Hoshen, Moshe

2017-01-01

Outcomes research and evidence-based medical practice is being positively impacted by proliferation of healthcare databases. Modern epidemiologic studies require complex data comprehension. A new tool, DisEpi, facilitates visual exploration of epidemiological data supporting Public Health Knowledge Discovery. It provides domain-experts a compact visualization of information at the population level. In this study, DisEpi is applied to Attention-Deficit/Hyperactivity Disorder (ADHD) patients within Clalit Health Services, analyzing the socio-demographic and ADHD filled prescription data between 2006 and 2016 of 1,605,800 children aged 6 to 17 years. DisEpi's goals facilitate the identification of (1) Links between attributes and/or events, (2) Changes in these relationships over time, and (3) Clusters of population attributes for similar trends. DisEpi combines hierarchical clustering graphics and a heatmap where color shades reflect disease time-trends. In the ADHD context, DisEpi allowed the domain-expert to visually analyze a snapshot summary of data mining results. Accordingly, the domain-expert was able to efficiently identify that: (1) Relatively younger children and particularly youngest children in class are treated more often, (2) Medication incidence increased between 2006 and 2011 but then stabilized, and (3) Progression rates of medication incidence is different for each of the 3 main discovered clusters (aka: profiles) of treated children. DisEpi delivered results similar to those previously published which used classical statistical approaches. DisEpi requires minimal preparation and fewer iterations, generating results in a user-friendly format for the domain-expert. DisEpi will be wrapped as a package containing the end-to-end discovery process. Optionally, it may provide automated annotation using calendar events (such as policy changes or media interests), which can improve discovery efficiency, interpretation, and policy implementation.

Intersectionality Dis/ability Research: How Dis/ability Research in Education Engages Intersectionality to Uncover the Multidimensional Construction of Dis/abled Experiences

Science.gov (United States)

Hernández-Saca, David I.; Gutmann Kahn, Laurie; Cannon, Mercedes A.

2018-01-01

The purpose of this chapter is to systematically review the research within the field of education that explicitly examined how various social constructions of identity intersect with dis/ability to qualitatively affect young adults' experiences by asking the following question: What are the key findings in education research focusing on youth and…

Nuclear structure functions at a future electron-ion collider

Science.gov (United States)

Aschenauer, E. C.; Fazio, S.; Lamont, M. A. C.; Paukkunen, H.; Zurita, P.

2017-12-01

The quantitative knowledge of heavy nuclei's partonic structure is currently limited to rather large values of momentum fraction x —robust experimental constraints below x ˜10-2 at low resolution scale Q2 are particularly scarce. This is in sharp contrast to the free proton's structure which has been probed in Deep Inelastic Scattering (DIS) measurements down to x ˜10-5 at perturbative resolution scales. The construction of an electron-ion collider (EIC) with a possibility to operate with a wide variety of nuclei, will allow one to explore the low-x region in much greater detail. In the present paper we simulate the extraction of the nuclear structure functions from measurements of inclusive and charm reduced cross sections at an EIC. The potential constraints are studied by analyzing simulated data directly in a next-to-leading order global fit of nuclear Parton Distribution Functions based on the recent EPPS16 analysis. A special emphasis is placed on studying the impact an EIC would have on extracting the nuclear gluon parton distribution function, the partonic component most prone to nonlinear effects at low Q2. In comparison to the current knowledge, we find that the gluon parton distribution function can be measured at an EIC with significantly reduced uncertainties.

Measurement of the longitudinal proton structure function in diffraction at the H1 experiment and prospects for diffraction at LHC

International Nuclear Information System (INIS)

Salek, David

2011-05-01

A measurement of the longitudinal diffractive structure function F L D using the H1 detector at HERA is presented. The structure function is extracted from first measurements of the diffractive cross section ep→eXY at centre of mass energies √(s) of 225 and 252 GeV at high values of inelasticity y, together with a new measurement at √(s) of 319 GeV, using data taken in 2006 and 2007. Previous H1 data at √(s) of 301 GeV complete the kinematic coverage needed to extract F L D in the range of photon virtualities 2.5 2 2 and fractional proton longitudinal momentum loss 10 -4 P -2 . The measured F L D is compared with leading twist predictions based on diffractive parton densities extracted in NLO QCD fits to previous diffractive DIS data and to a model which additionally includes a higher twist contribution derived from a colour dipole approach. The photoabsorption ratio for diffraction RD is extracted for Q 2 >7 GeV 2 and compared to the analogous quantity for inclusive DIS. (orig.)

DisVis: Visualizing Discussion Threads in Online Health Communities.

Science.gov (United States)

Nakikj, Drashko; Mamykina, Lena

2016-01-01

An increasing number of individuals turn to online health communities (OHC) for information, advice and support about their health condition or disease. As a result of users' active participation, these forums store overwhelming volumes of information, which can make access to this information challenging and frustrating. To help overcome this problem we designed a discussion visualization tool DisVis. DisVis includes features for overviewing, browsing and finding particular information in a discussion. In a between subjects study, we tested the impact of DisVis on individuals' ability to provide an overview of a discussion, find topics of interest and summarize opinions. The study showed that after using the tool, the accuracy of participants' answers increased by 68% (p-value = 0.023) while at the same time exhibiting trends for reducing the time to answer by 38% with no statistical significance (p-value = 0.082). Qualitative interviews showed general enthusiasm regarding tools for improving browsing and searching for information within discussion forums, suggested different usage scenarios, highlighted opportunities for improving the design of DisVis, and outlined new directions for visualizing user-generated content within OHCs.

The etiology of mathematical and reading (dis)ability covariation in a sample of Dutch twins.

Science.gov (United States)

Markowitz, Ezra M; Willemsen, Gonneke; Trumbetta, Susan L; van Beijsterveldt, Toos C E M; Boomsma, Dorret I

2005-12-01

The genetic etiology of mathematical and reading (dis)ability has been studied in a number of distinct samples, but the true nature of the relationship between the two remains unclear. Data from the Netherlands Twin Register was used to determine the etiology of the relationship between mathematical and reading (dis)ability in adolescent twins. Ratings of mathematical and reading problems were obtained from parents of over 1500 twin pairs. Results of bivariate structural equation modeling showed a genetic correlation around .60, which explained over 90% of the phenotypic correlation between mathematical and reading ability. The genetic model was the same for males and females.

The (Dis)Locative Effect of Noise: Globalisation, Disorientation and Noise in Marc Isaacs’ Lift

NARCIS (Netherlands)

Martin, N.

2016-01-01

This essay considers how thinking about noise can help us explore the relationship between disorientation and globalisation. It introduces the idea of the (dis)locative function of noise as a concept that enables the investigation of everyday disorientation. Such disorientation is encountered not as

Study of the photon-structure function F2γ in the reaction e+e- → e+e- + hadrons at LEP2

International Nuclear Information System (INIS)

Tyapkin, I.; Zimin, N.

1999-01-01

The photon-structure function F 2 γ has been studied in the Q 2 range from 10 to 1000 (GeV/c 2 ) 2 . The data corresponds to the integrated luminosity of about 220 pb -1 , collected by the DELPHI detector during the 1996-1998 LEP runs. Experimental distributions with particular attention on event shape are compared with predictions of the model. The three-component description of DIS proposed in our previous papers is applied here again. A result for Q 2 evolution of the photon-structure function has been obtained

(Dis)organizing through imbrications of human and material agencies

DEFF Research Database (Denmark)

Tavella, Elena

and material agencies. However there is a lack of insight into how human and material agencies are imbricated during the emergence of (dis)order, and how different imbrications lead to (dis)order. This paper addresses this gap by presenting a content analysis of a book reporting the Battle of Stalingrad during...... World War II. Drawing on the theory of affordances, the author identifies how different materials were used by the German and Soviet armies to organize specific activities, and whether and how those activities led to order and/or disorder. The analysis suggests that soldiers used different materials...... to organize different activities within one and the same organizational context, which led to (dis)order. Whether order or disorder emerged was dependent on how human and material agencies were imbricated within the conduct of particular activities, and how they related to internal or external influencing...

Higher-order predictions for splitting functions and coefficient functions from physical evolution kernels

International Nuclear Information System (INIS)

Vogt, A; Soar, G.; Vermaseren, J.A.M.

2010-01-01

We have studied the physical evolution kernels for nine non-singlet observables in deep-inelastic scattering (DIS), semi-inclusive e + e - annihilation and the Drell-Yan (DY) process, and for the flavour-singlet case of the photon- and heavy-top Higgs-exchange structure functions (F 2 , F φ ) in DIS. All known contributions to these kernels show an only single-logarithmic large-x enhancement at all powers of (1-x). Conjecturing that this behaviour persists to (all) higher orders, we have predicted the highest three (DY: two) double logarithms of the higher-order non-singlet coefficient functions and of the four-loop singlet splitting functions. The coefficient-function predictions can be written as exponentiations of 1/N-suppressed contributions in Mellin-N space which, however, are less predictive than the well-known exponentiation of the ln k N terms. (orig.)

On the energy dependence of DIS in the diffraction region of low x

Energy Technology Data Exchange (ETDEWEB)

Schildknecht, D. [Bielefeld, Univ., Fakultat fur Physik (Germany)

2005-07-01

The energy dependence of the virtual photoabsorption cross-section in deep inelastic scattering (DIS) at low x = Q{sup 2}/W{sup 2} < 0.1 may be described in terms of the saturation scale that in our approach depends on the energy, {lambda}{sup 2}{sub sat} = {lambda}{sup 2}{sub sat}(W{sup 2}). We briefly summarize our recent findings that allow us to predict the exponent C{sub 2} of {lambda}{sup 2}{sub sat}(W{sup 2}) {approx} (W{sup 2}){sup C{sub 2}} in agreement with the previous result obtained from fitting the experimental data. The exponent C{sub 2} depending on the relative magnitude of the longitudinal and transverse contribution to the structure function, direct measurements of the longitudinal part are urgently needed. (author)

On the production of clandestine dis/abled bodies

DEFF Research Database (Denmark)

Galis, Vasilis; Tzokas, Spyros; Tympas, Aristotle

paper makes a notice of this literature but moves on to discuss the co-production of technological borders and migrants with dis/abilities. In this case, dis/ability may be a cause or consequence of migration, and may become a barrier to both accessing protection and to entering a country. Nonetheless...... of policing technologies, repressive techniques and military technics. Instead, however, of staying at the technology of a fast patrolling boat with electronic eyes, we move on to show how exactly this EU electronic boat has clashed with a humble migrant floating device. We are interested...

Non-singlet coefficient functions for charged-current deep-inelastic scattering to the third order in QCD

International Nuclear Information System (INIS)

Davies, J.; Vogt, A.

2016-06-01

We have calculated the coefficient functions for the structure functions F_2, F_L and F_3 in ν- anti ν charged-current deep-inelastic scattering (DIS) at the third order in the strong coupling α_s, thus completing the description of unpolarized inclusive W"±-exchange DIS to this order of massless perturbative QCD. In this brief note, our new results are presented in terms of compact approximate expressions that are sufficiently accurate for phenomenological analyses. For the benefit of such analyses we also collect, in a unified notation, the corresponding lower-order contributions and the flavour non-singlet coefficient functions for ν+ anti ν charged-current DIS. The behaviour of all six third-order coefficient functions at small Bjorken-x is briefly discussed.

3-dimensional interactive space (3DIS)

International Nuclear Information System (INIS)

Veitch, S.; Veitch, J.; West, S.J.

1991-01-01

This paper reports on the 3DIS security system which uses standard CCTV cameras to create 3-Dimensional detection zones around valuable assets within protected areas. An intrusion into a zone changes light values and triggers an alarm that is annunciated, while images from multiple cameras are recorded. 3DIS lowers nuisance alarm rates and provides superior automated surveillance capability. Performance is improved over 2-D systems because activity around, above or below the zone does to cause an alarm. Invisible 3-D zones protect assets as small as a pin or as large as a 747 jetliner. Detection zones are created by excising subspaces from the overlapping fields of view of two or more video cameras. Hundred of zones may co-exist, operating simultaneously. Intrusion into any 3-D zone will cause a coincidental change in light values, triggering an alarm specific to that space

The three-loop splitting functions in QCD. The helicity-dependent case

International Nuclear Information System (INIS)

Moch, S.; Vogt, A.

2014-09-01

We present the next-to-next-to-leading order (NNLO) contributions to the main splitting functions for the evolution of longitudinally polarized parton densities of hadrons in perturbative QCD. The quark-quark and gluon-quark splitting functions have been obtained by extending our previous all Mellin-N calculations to the structure function g 1 in electromagnetic deep-inelastic scattering (DIS). Their quark-gluon and gluon-gluon counterparts have been derived using third-order fixed-N calculations of structure functions in graviton-exchange DIS, relations to the unpolarized case and mathematical tools for systems of Diophantine equations. The NNLO corrections to the splitting functions are small outside the region of small momentum fractions x where they exhibit a large double-logarithmic enhancement, yet the corrections to the evolution of the parton densities can be unproblematic down to at least x∼10 -4 .

Exploring the diversity of conceptualizations of work (dis)ability: a scoping review of published definitions.

Science.gov (United States)

Lederer, Valérie; Loisel, Patrick; Rivard, Michèle; Champagne, François

2014-06-01

Researchers are confronted to numerous definitions of work ability/disability, influenced by their context of emergence, discipline, purpose, underlying paradigm and relationship to time. This study provides an in-depth analysis of the concept through a systematic scoping review and the development of an integrative concept map of work (dis)ability. The research questions are: How has work (dis)ability been conceptualized from the perspectives of research, practice, policy and industry in the published scientific literature? How has the conceptualization of work (dis)ability evolved over time? A search strategy was designed with a library scientist to retrieve scientific publications containing explicit definition(s) of work (dis)ability in leading-edge databases. The screening and the extraction of the definitions were achieved by duplicate assessment. The definitions were subject to a comparative analysis based on the grounded theory approach. In total, 423 abstracts were retrieved from the bibliographic databases. After removing duplicates, 280 unique records were screened for inclusion. A final set of 115 publications containing unique original conceptual definitions served as basis for analysis. The scientific literature does not reflect a shared, integrated vision of the exact nature and dimensions of work (dis)ability. However, except for a few definitions, there seems to be a consensus that work (dis)ability is a relational concept resulting from the interaction of multiple dimensions that influence each other through different ecological levels. The conceptualization of work (dis)ability also seems to have become more dynamic over time. The way work (dis)ability is defined has important implications for research, compensation and rehabilitation.

Why Do Smallholder Farmers Dis-adopt Conservation Agriculture? Insights from Malawi

Science.gov (United States)

Chinseu, Edna; Dougill, Andrew; Stringer, Lindsay

2017-04-01

International donors and advisory bodies, national governments and non-governmental organisations (NGOs) are all actively promoting conservation agriculture (CA) as a route to sustainable agricultural development, recognising the importance of agriculture to the national economy and livelihoods of rural communities. CA is anchored in 3 principles: i) minimum soil disturbance, ii) continuous soil cover and iii) crop associations. It is advocated on the basis of improving crop yields, income and/or profits; reducing production costs; and conserving soil and water. Despite huge investments made by CA proponents, many farmers only practice CA for a short time. They subsequently dis-adopt (abandon) the seemingly appropriate innovation and revert back to conventional tillage practices. While factors affecting the (initial) adoption of agricultural technologies have been studied extensively, dis-adoption has rarely been investigated. Improving our understanding of dis-adoption of seemingly appropriate and sustainable interventions is vital for long-term sustainable land management, food security and for ensuring sustained impacts of agricultural development project interventions more broadly. This research investigates why smallholder farmers abandon CA practices in Malawi by exploring farmers' experiences of CA and their implications in dis-adoption. A mixed methods approach was used, involving household questionnaire survey and focus group discussions with smallholder farmers. Findings reveal that reasons for dis-adoption are multi-dimensional and multi-layered. While CA proponents are marketing CA as a time saving, labour saving and yield improving technology, many farmers report contrary experiences. Findings also showed that farmers lacked ownership of CA projects and encountered various social challenges, which coupled with unfulfilled expectations, led to dis-adoption. In sub-Saharan Africa, this suggests that there is a need to: (1) market CA as a climate

Di-jet production and angular correlations in DIS at NLO

International Nuclear Information System (INIS)

Jaliflian-Marian, J.

2016-01-01

Angular correlations are a sensitive probe of the dynamics of QCD at high energy. In particular azimuthal angular correlations between two hadrons produced in Deeply Inelastic Scattering (DIS) of a virtual photon on a hadron or nucleus offer the best environment in which to investigate high gluon density (gluon saturation) effects expected to arise at small x. Here we give a progress report on our derivation of Next to Leading Order (NLO) corrections to di-jet (di-hadron) production in DIS. (author)

Measurement of the longitudinal proton structure function in diffraction at the H1 experiment and prospects for diffraction at LHC

Energy Technology Data Exchange (ETDEWEB)

Salek, David

2011-05-15

A measurement of the longitudinal diffractive structure function F{sub L}{sup D} using the H1 detector at HERA is presented. The structure function is extracted from first measurements of the diffractive cross section ep{yields}eXY at centre of mass energies {radical}(s) of 225 and 252 GeV at high values of inelasticity y, together with a new measurement at {radical}(s) of 319 GeV, using data taken in 2006 and 2007. Previous H1 data at {radical}(s) of 301 GeV complete the kinematic coverage needed to extract F{sub L}{sup D} in the range of photon virtualities 2.5DIS data and to a model which additionally includes a higher twist contribution derived from a colour dipole approach. The photoabsorption ratio for diffraction RD is extracted for Q{sup 2}>7 GeV{sup 2} and compared to the analogous quantity for inclusive DIS. (orig.)

The three-loop splitting functions in QCD: The helicity-dependent case

Directory of Open Access Journals (Sweden)

S. Moch

2014-12-01

Full Text Available We present the next-to-next-to-leading order (NNLO contributions to the main splitting functions for the evolution of longitudinally polarized parton densities of hadrons in perturbative QCD. The quark–quark and gluon–quark splitting functions have been obtained by extending our previous all Mellin-N calculations to the structure function g1 in electromagnetic deep-inelastic scattering (DIS. Their quark–gluon and gluon–gluon counterparts have been derived using third-order fixed-N calculations of structure functions in graviton-exchange DIS, relations to the unpolarized case and mathematical tools for systems of Diophantine equations. The NNLO corrections to the splitting functions are small outside the region of small momentum fractions x where they exhibit a large double-logarithmic enhancement, yet the corrections to the evolution of the parton densities can be unproblematic down to at least x≈10−4.

QCD Precision Measurements and Structure Function Extraction at a High Statistics, High Energy Neutrino Scattering Experiment: NuSOnG

International Nuclear Information System (INIS)

Adams, T.; Batra, P.; Bugel, Leonard G.; Camilleri, Leslie Loris; Conrad, Janet Marie; Fisher, Peter H.; Formaggio, Joseph Angelo; Karagiorgi, Georgia S.; )

2009-01-01

We extend the physics case for a new high-energy, ultra-high statistics neutrino scattering experiment, NuSOnG (Neutrino Scattering On Glass) to address a variety of issues including precision QCD measurements, extraction of structure functions, and the derived Parton Distribution Functions (PDFs). This experiment uses a Tevatron-based neutrino beam to obtain a sample of Deep Inelastic Scattering (DIS) events which is over two orders of magnitude larger than past samples. We outline an innovative method for fitting the structure functions using a parameterized energy shift which yields reduced systematic uncertainties. High statistics measurements, in combination with improved systematics, will enable NuSOnG to perform discerning tests of fundamental Standard Model parameters as we search for deviations which may hint of 'Beyond the Standard Model' physics

Measurement of the 3He Spin Structure Functions in the Resonance Region: A Test of Quark-Hadron Duality on the Neutron

International Nuclear Information System (INIS)

Patricia Solvignon

2006-01-01

One of the biggest challenges in the study of the nucleon structure is the understanding of the transition from partonic degrees of freedom to hadronic degrees of freedom. In 1970, Bloom and Gilman noticed that structure function data taken at SLAC in the resonance region average to the scaling curve of deep inelastic scattering (DIS). Early theoretical interpretations suggested that these two very different regimes can be linked under the condition that the quark-gluon and quark-quark interactions are suppressed. Substantial efforts are ongoing to investigate this phenomenon both experimentally and theoretically. Quark-hadron duality has been confirmed for the unpolarized structure function F 2 of the proton and the deuteron using data from the experimental Hall C at Jefferson Lab (JLab). Indications of duality have been seen for the proton polarized structure function g 1 and the virtual photon asymmetry A 1 at JLab Hall B and HERMES. Because of the different resonance behavior, it is expected that the onset of duality for the neutron will happen at lower momentum transfer than for the proton. Now that precise spin structure data in the DIS region are available at large x, data in the resonance region are greatly needed in order to test duality in spin-dependent structure functions. The goal of experiment E01-012 was to provide such data on the neutron ( 3 He) in the moderate momentum transfer (Q 2 ) region, 1.0 2 2 ), where duality is expected to hold. The experiment ran successfully in early 2003 at Jefferson Lab in Hall B. It was an inclusive measurement of longitudinally polarized electrons scattering from a longitudinally or transversely polarized 3 He target. Asymmetries and cross section differences were measured in order to extract the 3 He spin structure function g 1 and virtual photon asymmetry A 1 in the resonance region. A test of quark-hadron duality has then been performed for the 3 He and neutron structure functions. The study of spin duality for

Disability Critical Race Theory: Exploring the Intersectional Lineage, Emergence, and Potential Futures of DisCrit in Education

Science.gov (United States)

Annamma, Subini Ancy; Ferri, Beth A.; Connor, David J.

2018-01-01

In this review, we explore how intersectionality has been engaged with through the lens of disability critical race theory (DisCrit) to produce new knowledge. In this chapter, we (1) trace the intellectual lineage for developing DisCrit, (2) review the body of interdisciplinary scholarship incorporating DisCrit to date, and (3) propose the future…

Two comments to utilization of structure function approach in deep inelastic scattering experiments

International Nuclear Information System (INIS)

Kuraev, E.; Galynskij, M.; Il'ichev, A.

2002-01-01

The 'returning to resonance' mechanism can be used to obtain the simple procedure of taking radiative corrections (RC) to deep inelastic scattering (DIS) cross sections into account in the framework of the Drell-Yan picture. Iteration procedure is proposed. Kinematical region y→1 can be described in the framework of the Drell-Yan picture using the structure function approach. The large RC in the lowest order reflect the Sudakov form factor suppression, which can be taken into account in all orders of the perturbation theory. Based on explicit calculation in two lowest orders of the perturbation theory, we construct the cross section in the y→1 region obeying renormalization group equations and including the Sudakov-like form factor suppression

[The nursing team and Maslow: (dis)satisfaction in the work].

Science.gov (United States)

Vitória Regis, Lorena Fagundes Ladeia; Porto, Isaura Setenta

2006-01-01

This text tries to understand the Nursing team and their (dis)satisfactions in the work. We consider the association with the theory of basic human needs of Abraham Maslow as a way to systemize and to comprehend the recurrent situations and the day-by-day Nursing issues. The necessities are structuralized hierarchically in physiological, security, social, auto-esteem and auto-accomplishment indicating the degree of satisfaction (from the disease to the fullness) of an individual or group. The advantage of this approach consists of being able to use the solid, depth and rich Maslow theory in concrete and particular situations of the Nursing team.

Sediment tracing in the upper Hunter catchment using elemental and mineralogical compositions: Implications for catchment-scale suspended sediment (dis)connectivity and management

Science.gov (United States)

Fryirs, Kirstie; Gore, Damian

2013-07-01

River bed colmation layers clog the interstices of gravel-bed rivers, impeding the vertical exchange of water and nutrients that drives ecosystem function in the hyporheic zone. In catchments where fine-grained sediment supply has increased since human disturbance, understanding sediment provenance and the (dis)connectivity of supply allows practitioners to target sediment source problems and treat them within catchment management plans. Release of alluvial fine-grained sediment from channel bank erosion since European settlement has resulted in the formation of a colmation layer along the upper Hunter River at Muswellbrook, eastern Australia. X-ray fluorescence spectrometry (XRF) and X-ray diffractometry (XRD) are used to determine the elemental and mineralogical signatures of colmation layer and floodplain sediment sources across this 4480 km2 catchment. This sediment tracing technique is used to construct a picture of how suspended sediment supply and (dis)connectivity operates in this catchment. In this system, the primary source areas are subcatchments in which sediments are stored largely in partly confined floodplain pockets, but from which sediment supply is unimpeded and directly connected to the receiving reach. Subcatchments in which alluvial sediment storage is significant — and which contain large, laterally unconfined valleys — are essentially 'switched off' or disconnected from the receiving reach. This is because large sediment sinks act to trap fine-grained sediment before it reaches the receiving reach, forming a buffer along the sediment conveyor belt. Given the age structure of floodplains in the receiving reach, this pattern of source area contributions and (dis)connectivity must have occurred throughout the Holocene.

ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval.

Science.gov (United States)

Wang, Jingyan; Gao, Xin; Wang, Quanquan; Li, Yongping

2012-05-08

The need to retrieve or classify protein molecules using structure or sequence-based similarity measures underlies a wide range of biomedical applications. Traditional protein search methods rely on a pairwise dissimilarity/similarity measure for comparing a pair of proteins. This kind of pairwise measures suffer from the limitation of neglecting the distribution of other proteins and thus cannot satisfy the need for high accuracy of the retrieval systems. Recent work in the machine learning community has shown that exploiting the global structure of the database and learning the contextual dissimilarity/similarity measures can improve the retrieval performance significantly. However, most existing contextual dissimilarity/similarity learning algorithms work in an unsupervised manner, which does not utilize the information of the known class labels of proteins in the database. In this paper, we propose a novel protein-protein dissimilarity learning algorithm, ProDis-ContSHC. ProDis-ContSHC regularizes an existing dissimilarity measure dij by considering the contextual information of the proteins. The context of a protein is defined by its neighboring proteins. The basic idea is, for a pair of proteins (i, j), if their context N(i) and N(j) is similar to each other, the two proteins should also have a high similarity. We implement this idea by regularizing dij by a factor learned from the context N(i) and N(j).Moreover, we divide the context to hierarchial sub-context and get the contextual dissimilarity vector for each protein pair. Using the class label information of the proteins, we select the relevant (a pair of proteins that has the same class labels) and irrelevant (with different labels) protein pairs, and train an SVM model to distinguish between their contextual dissimilarity vectors. The SVM model is further used to learn a supervised regularizing factor. Finally, with the new Supervised learned Dissimilarity measure, we update the Protein Hierarchial

The spin dependent structure function g1 of the deuteron and the proton

International Nuclear Information System (INIS)

Klostermann, L.

1995-01-01

This thesis presents a study on the spin structure of the nucleon, via deep inelastic scattering (DIS) of polarised nuons on polarised proton and deuterium targets. The work was done in the Spin Muon Collaboration (SMC) at CERN in Geneva. From the asymmetry in the scattering cross section for nucleon and lepton spins parallel and anti-parallel, one con determine the spin dependent structure function g 1 , which contains information on the quark and gluon spin distribution functions. The interpretation in the frame work of the quark parton model (QPM) of earlier results on g 1 p by the European Muon Collaboration (EMC), gave an indication that only a small fraction of the proton spin, compatible with zero, is carried by the spins of the constituent quarks. The SMC was set up to check this unexpected result with improved accuracy, and to combine measurements of g 1 p and g 1 d to test a fundamental sum rule in quantum chromodynamics (QCD), the Bjorken sum rule. (orig./WL)

A socio-cultural reframing of science and dis/ability in education: past problems, current concerns, and future possibilities

Science.gov (United States)

Connor, David J.; Valle, Jan W.

2015-12-01

In this article we assert the value of a socio-cultural reframing of science and dis/ability in education. We begin by problematizing current issues in education pertaining to the often-unquestioned concept of dis/ability and the impact that has upon research, theory, practice, and policy. As our topic is broad, we have chosen to focus upon four interconnected areas: (1) the historical mistrust of science and pseudo-science by people with dis/abilities; (2) the pervasive use of pseudo-science within the contemporary field of special education; (3) the use of dis/ability studies in education (DSE) to provide a contrast between a traditional positivist framing and a socio-cultural framing of dis/ability, and; (4) a brief exploration of what a DSE/socio-cultural grounding looks like for both schools and classroom teachers. In sum, our intention is to engage science educators to reject deficit-notions of dis/ability in favor of understanding it as part of human variation, and consider the personal and professional benefits of this shift.

[Estimation of cost-saving for reducing radioactive waste from nuclear medicine facilities by implementing decay in storage (DIS) in Japan].

Science.gov (United States)

Kida, Tetsuo; Hiraki, Hitoshi; Yamaguchi, Ichirou; Fujibuchi, Toshioh; Watanabe, Hiroshi

2012-01-01

DIS has not yet been implemented in Japan as of 2011. Therefore, even if risk was negligible, medical institutions have to entrust radioactive temporal waste disposal to Japan Radio Isotopes Association (JRIA) in the current situation. To decide whether DIS should be implemented in Japan or not, cost-saving effect of DIS was estimated by comparing the cost that nuclear medical facilities pay. By implementing DIS, the total annual cost for all nuclear medical facilities in Japan is estimated to be decreased to 30 million yen or less from 710 million yen. DIS would save 680 million yen (96%) per year.

Estimation of cost-saving for reducing radioactive waste from nuclear medicine facilities by implementing decay in storage (DIS) in Japan

International Nuclear Information System (INIS)

Kida, Tetsuo; Hiraki, Hitoshi; Yamaguchi, Ichirou; Fujibuchi, Toshioh; Watanabe, Hiroshi

2012-01-01

DIS has not yet been implemented in Japan as of 2011. Therefore, even if risk was negligible, medical institutions have to entrust radioactive temporal waste disposal to Japan Radio Isotopes Association (JRIA) in the current situation. To decide whether DIS should be implemented in Japan or not, cost-saving effect of DIS was estimated by comparing the cost that nuclear medical facilities pay. By implementing DIS, the total annual cost for all nuclear medical facilities in Japan is estimated to be decreased to 30 million yen or less from 710 million yen. DIS would save 680 million yen (96%) per year. (author)

Multifactorial causal model of brain (dis)organization and therapeutic intervention: Application to Alzheimer's disease.

Science.gov (United States)

Iturria-Medina, Yasser; Carbonell, Félix M; Sotero, Roberto C; Chouinard-Decorte, Francois; Evans, Alan C

2017-05-15

Generative models focused on multifactorial causal mechanisms in brain disorders are scarce and generally based on limited data. Despite the biological importance of the multiple interacting processes, their effects remain poorly characterized from an integrative analytic perspective. Here, we propose a spatiotemporal multifactorial causal model (MCM) of brain (dis)organization and therapeutic intervention that accounts for local causal interactions, effects propagation via physical brain networks, cognitive alterations, and identification of optimum therapeutic interventions. In this article, we focus on describing the model and applying it at the population-based level for studying late onset Alzheimer's disease (LOAD). By interrelating six different neuroimaging modalities and cognitive measurements, this model accurately predicts spatiotemporal alterations in brain amyloid-β (Aβ) burden, glucose metabolism, vascular flow, resting state functional activity, structural properties, and cognitive integrity. The results suggest that a vascular dysregulation may be the most-likely initial pathologic event leading to LOAD. Nevertheless, they also suggest that LOAD it is not caused by a unique dominant biological factor (e.g. vascular or Aβ) but by the complex interplay among multiple relevant direct interactions. Furthermore, using theoretical control analysis of the identified population-based multifactorial causal network, we show the crucial advantage of using combinatorial over single-target treatments, explain why one-target Aβ based therapies might fail to improve clinical outcomes, and propose an efficiency ranking of possible LOAD interventions. Although still requiring further validation at the individual level, this work presents the first analytic framework for dynamic multifactorial brain (dis)organization that may explain both the pathologic evolution of progressive neurological disorders and operationalize the influence of multiple interventional

The Microbial DNA Index System (MiDIS): A tool for microbial pathogen source identification

Energy Technology Data Exchange (ETDEWEB)

Velsko, S. P. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2010-08-09

The microbial DNA Index System (MiDIS) is a concept for a microbial forensic database and investigative decision support system that can be used to help investigators identify the sources of microbial agents that have been used in a criminal or terrorist incident. The heart of the proposed system is a rigorous method for calculating source probabilities by using certain fundamental sampling distributions associated with the propagation and mutation of microbes on disease transmission networks. This formalism has a close relationship to mitochondrial and Y-chromosomal human DNA forensics, and the proposed decision support system is somewhat analogous to the CODIS and SWGDAM mtDNA databases. The MiDIS concept does not involve the use of opportunistic collections of microbial isolates and phylogenetic tree building as a basis for inference. A staged approach can be used to build MiDIS as an enduring capability, beginning with a pilot demonstration program that must meet user expectations for performance and validation before evolving into a continuing effort. Because MiDIS requires input from a a broad array of expertise including outbreak surveillance, field microbial isolate collection, microbial genome sequencing, disease transmission networks, and laboratory mutation rate studies, it will be necessary to assemble a national multi-laboratory team to develop such a system. The MiDIS effort would lend direction and focus to the national microbial genetics research program for microbial forensics, and would provide an appropriate forensic framework for interfacing to future national and international disease surveillance efforts.

ProDis-ContSHC: Learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval

KAUST Repository

Wang, Jim Jing-Yan

2012-05-08

Background: The need to retrieve or classify protein molecules using structure or sequence-based similarity measures underlies a wide range of biomedical applications. Traditional protein search methods rely on a pairwise dissimilarity/similarity measure for comparing a pair of proteins. This kind of pairwise measures suffer from the limitation of neglecting the distribution of other proteins and thus cannot satisfy the need for high accuracy of the retrieval systems. Recent work in the machine learning community has shown that exploiting the global structure of the database and learning the contextual dissimilarity/similarity measures can improve the retrieval performance significantly. However, most existing contextual dissimilarity/similarity learning algorithms work in an unsupervised manner, which does not utilize the information of the known class labels of proteins in the database.Results: In this paper, we propose a novel protein-protein dissimilarity learning algorithm, ProDis-ContSHC. ProDis-ContSHC regularizes an existing dissimilarity measure dij by considering the contextual information of the proteins. The context of a protein is defined by its neighboring proteins. The basic idea is, for a pair of proteins (i, j), if their context N (i) and N (j) is similar to each other, the two proteins should also have a high similarity. We implement this idea by regularizing dij by a factor learned from the context N (i) and N (j). Moreover, we divide the context to hierarchial sub-context and get the contextual dissimilarity vector for each protein pair. Using the class label information of the proteins, we select the relevant (a pair of proteins that has the same class labels) and irrelevant (with different labels) protein pairs, and train an SVM model to distinguish between their contextual dissimilarity vectors. The SVM model is further used to learn a supervised regularizing factor. Finally, with the new Supervised learned Dissimilarity measure, we update

Advancement in Watershed Modelling Using Dynamic Lateral and Longitudinal Sediment (Dis)connectivity Prediction

Science.gov (United States)

Mahoney, D. T.; al Aamery, N. M. H.; Fox, J.

2017-12-01

The authors find that sediment (dis)connectivity has seldom taken precedence within watershed models, and the present study advances this modeling framework and applies the modeling within a bedrock-controlled system. Sediment (dis)connectivity, defined as the detachment and transport of sediment from source to sink between geomorphic zones, is a major control on sediment transport. Given the availability of high resolution geospatial data, coupling sediment connectivity concepts within sediment prediction models offers an approach to simulate sediment sources and pathways within a watershed's sediment cascade. Bedrock controlled catchments are potentially unique due to the presence of rock outcrops causing longitudinal impedance to sediment transport pathways in turn impacting the longitudinal distribution of the energy gradient responsible for conveying sediment. Therefore, the authors were motivated by the need to formulate a sediment transport model that couples sediment (dis)connectivity knowledge to predict sediment flux for bedrock controlled catchments. A watershed-scale sediment transport model was formulated that incorporates sediment (dis)connectivity knowledge collected via field reconnaissance and predicts sediment flux through coupling with the Partheniades equation and sediment continuity model. Sediment (dis)connectivity was formulated by coupling probabilistic upland lateral connectivity prediction with instream longitudinal connectivity assessments via discretization of fluid and sediment pathways. Flux predictions from the upland lateral connectivity model served as an input to the instream longitudinal connectivity model. Disconnectivity in the instream model was simulated via the discretization of stream reaches due to barriers such as bedrock outcroppings and man-made check dams. The model was tested for a bedrock controlled catchment in Kentucky, USA for which extensive historic water and sediment flux data was available. Predicted sediment

Environmental Liability and Organizational Structure

OpenAIRE

Laurent Franckx; F.P. de Vries

2004-01-01

This paper presents a multitask principal-agent model to examine how environmental liability rules for individual managers within a corporate hierarchy affect, on the one hand, the incentive schemes the organization provides and, on the other hand, the choice between a functional or a product-based organizational structure. If managers are risk neutral, a product-based organization dominates a functional organization and allows to obtain first-best effort level. If, moreover, there are no dis...

Quark-antiquark production in DIS diffractive dissociation

International Nuclear Information System (INIS)

Bartels, J.; Lotter, H.; Wuesthoff, M.

1996-02-01

We calculate the cross section for the production of two jets with large transverse momenta k 2 in DIS diffractive dissociation for both transverse and longitudinally polarized photons. The scale which defines the hardness of the Pomeron is found to be k 2 (Q 2 +M 2 )/M 2 . We present analytic expressions and discuss numerical results relevant for the diffractive dissociation at HERA. (orig.)

Tagged spectator deep-inelastic scattering off the deuteron as a tool to study neutron structure

International Nuclear Information System (INIS)

Cosyn, W.; Sargsian, M.

2016-01-01

We give an overview of a model to describe deep-inelastic scattering (DIS) off the deuteron with a spectator proton (e+d → e'+X+p s ), based on the virtual nucleon approximation (VNA). The model accounts for the final-state interactions (FSI) of the DIS debris with the spectator proton. Values of the rescattering cross section are obtained by fits to high-momentum spectator data. By using the so-called 'pole extrapolation' method, free neutron structure functions can be obtained by extrapolating low-momentum spectator proton data to the on-shell neutron pole. We apply this method to the BONuS data set and find a surprising Bjorken x dependence, indicating a possible rise of the neutron to proton structure function ratio at high x. (authors)

Measurement of the ³He Spin Structure Functions in the Resonance Region: A Test of Quark-Hadron Duality on the Neutron

Energy Technology Data Exchange (ETDEWEB)

Solvignon, Patricia [Temple Univ., Philadelphia, PA (United States)

2006-08-01

One of the biggest challenges in the study of the nucleon structure is the understanding of the transition from partonic degrees of freedom to hadronic degrees of freedom. In 1970, Bloom and Gilman noticed that structure function data taken at SLAC in the resonance region average to the scaling curve of deep inelastic scattering (DIS). Early theoretical interpretations suggested that these two very different regimes can be linked under the condition that the quark-gluon and quark-quark interactions are suppressed. Substantial efforts are ongoing to investigate this phenomenon both experimentally and theoretically. Quark-hadron duality has been confirmed for the unpolarized structure function F₂ of the proton and the deuteron using data from the experimental Hall C at Jefferson Lab (JLab). Indications of duality have been seen for the proton polarized structure function g₁ and the virtual photon asymmetry A₁ at JLab Hall B and HERMES. Because of the different resonance behavior, it is expected that the onset of duality for the neutron will happen at lower momentum transfer than for the proton. Now that precise spin structure data in the DIS region are available at large x, data in the resonance region are greatly needed in order to test duality in spin-dependent structure functions. The goal of experiment E01-012 was to provide such data on the neutron (³He) in the moderate momentum transfer (Q²) region, 1.0 < Q² < 4.0 (GeV/c²), where duality is expected to hold. The experiment ran successfully in early 2003 at Jefferson Lab in Hall B. It was an inclusive measurement of longitudinally polarized electrons scattering from a longitudinally or transversely polarized ³He target. Asymmetries and cross section differences were measured in order to extract the ³He spin structure function g₁ and virtual photon asymmetry A₁ in the resonance region. A test

the organizing principle at the interface of biological (dis)order

Indian Academy of Sciences (India)

Complexity: the organizing principle at the interface of biological (dis)order ... in a quantifiable fashion, as the amount of information, an informatic template ... We propose that the complexity of living systems can be understood through two ...

Performances of Student Activism: Sound, Silence, Gender, and Dis/ability

Science.gov (United States)

Pasque, Penny A.; Vargas, Juanita Gamez

2014-01-01

This chapter explores the various performances of activism by students through sound, silence, gender, and dis/ability and how these performances connect to social change efforts around issues such as human trafficking, homeless children, hunger, and children with varying abilities.

DIS - The Next Generation: A perspective for European Space Programmes

NARCIS (Netherlands)

Jense, G.J.; Kuijpers, N.H.L.

1996-01-01

During the past decade, requirements within the US defence community for simulation-based tools to support acquisition, planning, (team) training, and analysis, have resulted in a standard for distributed simulation known as DIS (Distributed Interactive Simulation). The potential advantages of

DIS - the next generation : a perspective for European space programmes

NARCIS (Netherlands)

Jense, Hans; Kuijpers, N.H.L.

1996-01-01

During the past decade, requirements within the US defence community for simulation-based tools to support acquisition, planning, (team) training, and analysis, have resulted in a standard for distributed simulation known as DIS (Distributed Interactive Simulation). The potential advantages of

Thermodiffusion as a close-to-interface effect that matters in non-isothermal (dis)orderly protein aggregations

Energy Technology Data Exchange (ETDEWEB)

Gadomski, A., E-mail: agad@utp.edu.pl; Kruszewska, N., E-mail: nkruszewska@utp.edu.pl

2014-08-01

The goal of this discussion letter is to argue how and why an inherent nanoscale thermodiffusion (Soret-type) effect can be relevant in (dis)orderly protein aggregation. We propose a model in which the aggregation of proteins, in the presence of temperature gradient, is described in terms of Smoluchowski dynamics in the phase space of nuclei sizes. The Soret coefficient of the aggregation is proportional to the variations of the aggregation free energy over temperature. The free energy is related to the (interface) boundary condition of the system. When boundary condition is of equilibrium Gibbs–Thomson type, with a well-stated surface tension of the nucleus, to the system can be assigned a negative Soret effect. On the contrary, when a non-equilibrium perturbing (salting-out) term enters the boundary condition, a positive Soret effect may manifest. A zero-value Soret regime is expected to occur in between, yielding very soft (“fragile”) non-Kossel protein-type crystals. - Highlights: • Comprehension for non-isothermal formation of (dis)orderly protein aggregation. • Classification of temperature-sensitive morphologies in colloid-type aggregation. • Morphologies split into near-equilibrium and nonequilibrium structural outcomes. • Classification on mesoscopic nonequilibrium thermodynamics near local equilibrium.

Pion content of the nucleon in polarized semi-inclusive DIS

Energy Technology Data Exchange (ETDEWEB)

Melnitchouk, W. [Univ. of Regensburg (Germany); Thomas, A.W. [Univ. of Adelaide (Australia)

1994-04-01

An explicit pionic component of the nucleon may be identified by measuring polarized {Delta}{sup ++} fragments produced in deep-inelastic scattering (DIS) off polarized protons. The pion-exchange model predicts highly correlated polarizations of the {Delta}{sup ++} and target proton, in marked contrast with the competing diquark fragmentation process.

Jets in DIS and the virtual photon structure

International Nuclear Information System (INIS)

Maxfield, Stephen

2001-01-01

Single-inclusive jet cross sections in deep-inelastic scattering for photon virtualities 5 2 2 are measured in a data sample corresponding to an integrated luminosity of 20.9 pb-1 as a function of the jet transverse energy E T , of the ratio E T 2 /Q 2 and of the Bjorken scaling variable x Bj . Data are compared to next-to-leading order perturbative QCD calculations using the squared four momentum transfer Q 2 and the squared jet E T as renormalisation scale. Neither choice is able to describe the data over the full phase space region, in particular in the forward region towards the proton remnant. Possible explanations of this discrepancies are discussed. Dijet event rates, R 2 , have also been measured for deep inelastic scattering in the low x Bj and low Q 2 . R 2 is measured as a function of both x Bj and Q 2 extending a single differential analysis recently published by H1. This allows a more detailed study of jet production at low x Bj in a regime where both scales, Q 2 and jet E T 2 , are comparable. The data are confronted with next-to-leading order QCD calculations including both point-like and non-pointlike structure of the virtual photon

Safety, efficacy, and intraoperative characteristics of DisCoVisc and Healon ophthalmic viscosurgical devices for cataract surgery

Directory of Open Access Journals (Sweden)

Modi SS

2011-09-01

Full Text Available Satish S Modi1, James A Davison2, Tom Walters3 1Seeta Eye Centers, Poughkeepsie, NY, USA; 2Wolfe Clinic, Marshalltown, IA, USA; 3Texas Eye Care, Austin, TX, USA Purpose: To evaluate the safety and efficacy of DisCoVisc ophthalmic viscosurgical device (OVD, Alcon Laboratories, Inc with respect to a comparator, Healon OVD (Advanced Medical Optics, Inc. Patients and methods: In this prospective study, patients with cataracts were randomized to an OVD, and then received phacoemulsification and injection of an intraocular lens. After each surgery, unmasked investigators completed subjective questionnaires about OVD characteristics during each stage of the procedure. Masked technicians evaluated objective safety parameters of intraocular pressure (IOP and endothelial cell density, with 90 days of follow-up. Results: The DisCoVisc OVD group (128 eyes and the Healon OVD group (121 eyes had statistically similar outcomes for IOP and for endothelial cell loss. Subjectively assessed viscosity was statistically different (P < 0.0001, with Healon OVD most often rated “cohesive” and DisCoVisc OVD most often rated “both dispersive and cohesive”. Workspace maintenance differed between groups (P < 0.0001, with workspace most frequently rated “full chamber maintained” when using DisCoVisc OVD and most frequently rated “workspace maintained” when using Healon OVD. “Flat” or “shallow” workspace ratings occurred only in the Healon OVD group. Conclusion: DisCoVisc OVD had both cohesive and dispersive properties, and was safe and effective for every stage of cataract surgery. Keywords: cataract, endothelial cell density, viscoelastic, phacoemulsification

A Socio-Cultural Reframing of Science and Dis/ability in Education: Past Problems, Current Concerns, and Future Possibilities

Science.gov (United States)

Connor, David J.; Valle, Jan W.

2015-01-01

In this article we assert the value of a socio-cultural reframing of science and dis/ability in education. We begin by problematizing current issues in education pertaining to the often-unquestioned concept of dis/ability and the impact that has upon research, theory, practice, and policy. As our topic is broad, we have chosen to focus upon four…

Alteration of a second putative fusion peptide of structural glycoprotein E2 of Classical Swine Fever Virus alters virus replication and virulence in swine

Science.gov (United States)

E2, the major envelope glycoprotein of Classical Swine Fever Virus (CSFV), is involved in several critical virus functions including cell attachment, host range susceptibility, and virulence in natural hosts. Functional structural analysis of E2 based on Wimley-White interfacial hydrophobicity dis...

Network protocol changes can improve DisCom WAN performance : evaluating TCP modifications and SCTP in the ASC tri-lab environment.

Energy Technology Data Exchange (ETDEWEB)

Tolendino, Lawrence F.; Hu, Tan Chang

2005-06-01

The Advanced Simulation and Computing (ASC) Distance Computing (DisCom) Wide Area Network (WAN) is a high performance, long distance network environment that is based on the ubiquitous TCP/IP protocol set. However, the Transmission Control Protocol (TCP) and the algorithms that govern its operation were defined almost two decades ago for a network environment vastly different from the DisCom WAN. In this paper we explore and evaluate possible modifications to TCP that purport to improve TCP performance in environments like the DisCom WAN. We also examine a much newer protocol, SCTP (Stream Control Transmission Protocol) that claims to provide reliable network transport while also implementing multi-streaming, multi-homing capabilities that are appealing in the DisCom high performance network environment. We provide performance comparisons and recommendations for continued development that will lead to network communications protocol implementations capable of supporting the coming ASC Petaflop computing environments.

Short-range and long-range correlations in DIS at HERA

International Nuclear Information System (INIS)

Chekanov, S. V.; Zawiejski, L.

1999-01-01

Correlations in deep-inelastic scattering (DIS) at HERA are investigated in order to test perturbative QCD and quark fragmentation universality. Two-particle correlations at small angular separations are measured in the Breit frame and compared to e + e - collisions. Also presented are the correlations between the current and target regions of the Breit frame

Time evolution of hadronization and grey tracks in DIS off nuclei

International Nuclear Information System (INIS)

Ciofi degli Atti, C.; Kopeliovich, B.Z.

2005-01-01

The analysis of the grey tracks produced in deep inelastic scattering (DIS) off nuclei provides important information on the space-time development of hadronization in nuclear medium. This method is complementary to the measurement of nuclear attenuation of leading inclusive hadrons. While the latter is focused on the hadronization dynamics for the quite rare process of leading hadrons production, the former covers the main bulk of inelastic events, and its Q 2 dependence is a very sensitive tool to discriminate between different models of hadronization. Employing the model of perturbative hadronization developed earlier, we calculate the Q 2 and x Bj dependences of the number of collisions and relate it to the mean number of grey tracks, using an empirical relation obtained from the analysis of data from the Fermilab E665 experiment on DIS of muons off the Xe nucleus. We found the number of grey tracks to rise steeply with Q 2 in good agreement with the experimental data

Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA

DEFF Research Database (Denmark)

Lubas, Michal Szymon; Damgaard, Christian Kroun; Tomecki, Rafal

2013-01-01

Turnover of mRNA in the cytoplasm of human cells is thought to be redundantly conducted by the monomeric 5'-3' exoribonuclease hXRN1 and the 3'-5' exoribonucleolytic RNA exosome complex. However, in addition to the exosome-associated 3'-5' exonucleases hDIS3 and hDIS3L, the human genome encodes...

Gluon saturation: Survival probability for leading neutrons in DIS

International Nuclear Information System (INIS)

Levin, Eugene; Tapia, Sebastian

2012-01-01

In this paper we discuss the example of one rapidity gap process: the inclusive cross sections of the leading neutrons in deep inelastic scattering with protons (DIS). The equations for this process are proposed and solved, giving the example of theoretical calculation of the survival probability for one rapidity gap processes. It turns out that the value of the survival probability is small and it decreases with energy.

Scripted Curriculum: What Movies Teach about Dis/ability and Black Males

Science.gov (United States)

Agosto, Vonzell

2014-01-01

Background/Context: Tropes of dis/ability in the movies and master-narratives of Black males in education and society are typically treated in isolation. Furthermore, education research on Hollywood movies has typically focused on portrayals of schools, principals, and teachers even though education professionals are exposed to a broader range of…

Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS

KAUST Repository

Wong, Yee-Chin

2016-08-22

Burkholderia cenocepacia infection often leads to fatal cepacia syndrome in cystic fibrosis patients. However, antibiotic therapy rarely results in complete eradication of the pathogen due to its intrinsic resistance to many clinically available antibiotics. Recent attention has turned to the identification of essential genes as the proteins encoded by these genes may serve as potential targets for development of novel antimicrobials. In this study, we utilized TraDIS (Transposon Directed Insertion-site Sequencing) as a genome-wide screening tool to facilitate the identification of B. cenocepacia genes essential for its growth and viability. A transposon mutant pool consisting of approximately 500,000 mutants was successfully constructed, with more than 400,000 unique transposon insertion sites identified by computational analysis of TraDIS datasets. The saturated library allowed for the identification of 383 genes that were predicted to be essential in B. cenocepacia. We extended the application of TraDIS to identify conditionally essential genes required for in vitro growth and revealed an additional repertoire of 439 genes to be crucial for B. cenocepacia growth under nutrient-depleted conditions. The library of B. cenocepacia mutants can subsequently be subjected to various biologically related conditions to facilitate the discovery of genes involved in niche adaptation as well as pathogenicity and virulence.

Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS

KAUST Repository

Wong, Yee-Chin; Abd El Ghany, Moataz; Naeem, Raeece; Lee, Kok-Wei; Tan, Yung-Chie; Pain, Arnab; Nathan, Sheila

2016-01-01

Burkholderia cenocepacia infection often leads to fatal cepacia syndrome in cystic fibrosis patients. However, antibiotic therapy rarely results in complete eradication of the pathogen due to its intrinsic resistance to many clinically available antibiotics. Recent attention has turned to the identification of essential genes as the proteins encoded by these genes may serve as potential targets for development of novel antimicrobials. In this study, we utilized TraDIS (Transposon Directed Insertion-site Sequencing) as a genome-wide screening tool to facilitate the identification of B. cenocepacia genes essential for its growth and viability. A transposon mutant pool consisting of approximately 500,000 mutants was successfully constructed, with more than 400,000 unique transposon insertion sites identified by computational analysis of TraDIS datasets. The saturated library allowed for the identification of 383 genes that were predicted to be essential in B. cenocepacia. We extended the application of TraDIS to identify conditionally essential genes required for in vitro growth and revealed an additional repertoire of 439 genes to be crucial for B. cenocepacia growth under nutrient-depleted conditions. The library of B. cenocepacia mutants can subsequently be subjected to various biologically related conditions to facilitate the discovery of genes involved in niche adaptation as well as pathogenicity and virulence.

Candidate essential genes in Burkholderia cenocepacia J2315 identified by genome-wide TraDIS

Directory of Open Access Journals (Sweden)

Yee-Chin Wong

2016-08-01

Full Text Available Burkholderia cenocepacia infection often leads to fatal cepacia syndrome in cystic fibrosis patients. However, antibiotic therapy rarely results in complete eradication of the pathogen due to its intrinsic resistance to many clinically available antibiotics. Recent attention has turned to the identification of essential genes as the proteins encoded by these genes may serve as potential targets for development of novel antimicrobials. In this study, we utilized TraDIS (Transposon Directed Insertion-site Sequencing as a genome-wide screening tool to facilitate the identification of B. cenocepacia genes essential for its growth and viability. A transposon mutant pool consisting of approximately 500,000 mutants was successfully constructed, with more than 400,000 unique transposon insertion sites identified by computational analysis of TraDIS datasets. The saturated library allowed for the identification of 383 genes that were predicted to be essential in B. cenocepacia. We extended the application of TraDIS to identify conditionally essential genes required for in vitro growth and revealed an additional repertoire of 439 genes to be crucial for B. cenocepacia growth under nutrient-depleted conditions. The library of B. cenocepacia mutants can subsequently be subjected to various biologically related conditions to facilitate the discovery of genes involved in niche adaptation as well as pathogenicity and virulence.

DisA and c-di-AMP act at the intersection between DNA-damage response and stress homeostasis in exponentially growing Bacillus subtilis cells.

Science.gov (United States)

Gándara, Carolina; Alonso, Juan C

2015-03-01

Bacillus subtilis contains two vegetative diadenylate cyclases, DisA and CdaA, which produce cyclic di-AMP (c-di-AMP), and one phosphodiesterase, GdpP, that degrades it into a linear di-AMP. We report here that DisA and CdaA contribute to elicit repair of DNA damage generated by alkyl groups and H2O2, respectively, during vegetative growth. disA forms an operon with radA (also termed sms) that encodes a protein distantly related to RecA. Among different DNA damage agents tested, only methyl methane sulfonate (MMS) affected disA null strain viability, while radA showed sensitivity to all of them. A strain lacking both disA and radA was as sensitive to MMS as the most sensitive single parent (epistasis). Low c-di-AMP levels (e.g. by over-expressing GdpP) decreased the ability of cells to repair DNA damage caused by MMS and in less extent by H2O2, while high levels of c-di-AMP (absence of GdpP or expression of sporulation-specific diadenylate cyclase, CdaS) increased cell survival. Taken together, our results support the idea that c-di-AMP is a crucial signalling molecule involved in DNA repair with DisA and CdaA contributing to modulate different DNA damage responses during exponential growth. Copyright © 2015 Elsevier B.V. All rights reserved.

Measurement of the spin structure of the deuteron in the DIS region

Czech Academy of Sciences Publication Activity Database

Ageev, E.; Alexakhin, V.; Alexandrov, Y.; Alexeev, G.; Amoroso, A.; Badelek, B.; Balestra, F.; Ball, J.; Baum, G.; Bedfer, Y.; Berglund, P.; Bernet, C.; Bertini, R.; Birsa, R.; Bisplinghoff, J.; Bordalo, P.; Bradamante, F.; Bravar, A.; Bressan, A.; Burtin, E.; Bussa, M.; Bytchkov, V.; Cerini, L.; Chapiro, A.; Cicuttin, A.; Colantoni, M.; Colavita, A.; Costa, S.; Crespo, M.; d'Hose, N.; Dalla Torre, S.; Dasgupta, S. S.; De Masi, R.; Dedek, N.; Denisov, O.; Dhara, L.; Diaz Kavka, V.; Dinkelbach, A.; Dolgopolov, A.; Donskov, S.; Dorofeev, V.; Doshita, N.; Duic, V.; Dünnweber, W.; Ehlers, J.; Eversheim, P.; Eyrich, W.; Fabro, M.; Faessler, M.; Falaleev, V.; Fauland, P.; Ferrero, A.; Ferrero, L.; Finger, M.; Finger jr., M.; Fischer, H.; Franz, J.; Friedrich, J.; Frolov, V.; Fuchs, U.; Garfagnini, R.; Gautheron, F.; Gavrichtchouk, O.; Gerassimov, S.; Geyer, R.; Giorgi, M.; Gobbo, B.; Goertz, S.; Gorin, A.; Grajek, O.; Grasso, A.; Grube, B.; Grünemaier, A.; Hannappel, J.; von Harrach, D.; Hasegawa, T.; Hedicke, S.; Heinsius, F.; Hermann, R.; Hess, C.; Hinterberger, F.; von Hodenberg, M.; Horikawa, N.; Horikawa, S.; Ijaduola, R.; Ilgner, C.; Ioukaev, A.; Ishimoto, S.; Ivanov, O.; Iwata, T.; Jahn, R.; Janata, A.; Joosten, R.; Jouravlev, N. I.; Kabuss, E.; Kalinnikov, V.; Kang, D.; Karstens, F.; Kastaun, W.; Ketzer, B.; Khaustov, G.; Khokhlov, Y.; Khomutov, N.; Kisselev, Y.; Klein, F.; Koblitz, S.; Koivuniemi, J.; Kolosov, V.; Komissarov, E.; Kondo, K.; Königsmann, K.; Konoplyannikov, A.; Konorov, I.; Konstantinov, V.; Korentchenko, A.; Korzenev, A.; Kotzinian, A.; Koutchinski, N.; Kowalik, K.; Kravchuk, N.; Krivokhizhin, G.; Kroumchtein, Z.; Kuhn, R.; Kunne, F.; Kurek, K.; Ladygin, M.; Lamanna, M.; Le Goff, J.; Leberig, M.; Lichtenstadt, J.; Liska, T.; Ludwig, I.; Maggiora, A.; Maggiora, M.; Magnon, A.; Mallot, G.; Manuilov, I.; Marchand, C.; Marroncle, J.; Martin, A.; Marzec, J.; Matsuda, T.; Maximov, A.; Medved, K.; Meyer, W.; Mielech, A.; Mikhailov, Y.; Moinester, M.; Nähle, O.; Nassalski, J.; Neliba, S.; Neyret, D.; Nikolaenko, V.; Nozdrin, A.; Obraztsov, V.; Olshevsky, A.; Ostrick, M.; Padee, A.; Pagano, P.; Panebianco, S.; Panzieri, D.; Paul, S.; Pereira, H.; Peshekhonov, D.; Peshekhonov, V.; Piragino, G.; Platchkov, S.; Platzer, K.; Pochodzalla, J.; Polyakov, V.; Popov, A.; Pretz, J.; Quintans, C.; Ramos, S.; Rebourgeard, P.; Reicherz, G.; Reymann, J.; Rith, K.; Rozhdestvensky, A.; Rondio, E.; Sadovski, A.; Saller, E.; Samoylenko, V.; Sandacz, A.; Sans, M.; Sapozhnikov, M.; Savin, I.; Schiavon, P.; Schill, C.; Schmidt, T.; Schmitt, H.; Schmitt, L.; Shevchenko, O.; Shishkin, A.; Siebert, H.; Sinha, L.; Sissakian, A.; Skachkova, A.; Slunecka, M.; Smirnov, G.; Sozzi, F.; Sugonyaev, V.; Srnka, Aleš; Stinzing, F.; Stolarski, M.; Sulc, M.; Sulej, R.; Takabayashi, N.; Tchalishev, V.; Tassarotto, F.; Teufel, A.; Thers, D.; Tkatchev, L.; Toeda, T.; Tretyak, V.; Trousov, S.; Varanda, M.; Virius, M.; Vlassov, N.; Wagner, M.; Webb, R.; Weise, E.; Weitzel, Q.; Wiedner, U.; Wiesmann, M.; Windmolders, R.; Wirth, S.; Wislicki, W.; Zanetti, A.; Zaremba, K.; Zhao, J.; Ziegler, R.; Zvyagin, A.

2005-01-01

Roč. 612, 3-4 (2005), s. 154-164 ISSN 0370-2693 R&D Projects: GA MŠk(CZ) ME 492 Keywords : deep inelastic scattering * structure functions Subject RIV: BF - Elementary Particles and High Energy Physics Impact factor: 5.301, year: 2005

Measuring the (Dis) Satisfaction of the Employees in the Macedonian Companies

Science.gov (United States)

Mitreva, Elizabeta; Krivokapic, Zdravko; Taskov, Nako; Jovanovic, Jelena

2018-01-01

The (dis)satisfaction of the employees who create and realize activities is as much important as the satisfaction of the buyers. In this paper, we have presented the results from the research in the Macedonian companies concerning the capacity of the leadership to motivate the employees to do their job efficiently and to preserve their initiative…

Structural Health Monitoring of a Composite Panel Based on PZT Sensors and a Transfer Impedance Framework.

Science.gov (United States)

Dziendzikowski, Michal; Niedbala, Patryk; Kurnyta, Artur; Kowalczyk, Kamil; Dragan, Krzysztof

2018-05-11

One of the ideas for development of Structural Health Monitoring (SHM) systems is based on excitation of elastic waves by a network of PZT piezoelectric transducers integrated with the structure. In the paper, a variant of the so-called Transfer Impedance (TI) approach to SHM is followed. Signal characteristics, called the Damage Indices (DIs), were proposed for data presentation and analysis. The idea underlying the definition of DIs was to maintain most of the information carried by the voltage induced on PZT sensors by elastic waves. In particular, the DIs proposed in the paper should be sensitive to all types of damage which can influence the amplitude or the phase of the voltage induced on the sensor. Properties of the proposed DIs were investigated experimentally using a GFRP composite panel equipped with PZT networks attached to its surface and embedded into its internal structure. Repeatability and stability of DI indications under controlled conditions were verified in tests. Also, some performance indicators for surface-attached and structure-embedded sensors were obtained. The DIs' behavior was dependent mostly on the presence of a simulated damage in the structure. Anisotropy of mechanical properties of the specimen, geometrical properties of PZT network as well as, to some extent, the technology of sensor integration with the structure were irrelevant for damage indication. This property enables the method to be used for damage detection and classification.

Transformative social innovation and (dis)empowerment

DEFF Research Database (Denmark)

Avelino, Flor; Wittmayer, Julia; Pel, Bonno

2017-01-01

This article responds to increasing public and academic discourses on social innovation, which often rest on the assumption that social innovation can drive societal change and empower actors to deal with societal challenges and a retreating welfare state. In order to scrutinise this assumption......, this article proposes a set of concepts to study the dynamics of transformative social innovation and underlying processes of multi-actor (dis)empowerment. First, the concept of transformative social innovation is unpacked by proposing four foundational concepts to help distinguish between different pertinent...... ‘shades’ of change and innovation: 1) social innovation, (2) system innovation, (3) game-changers, and (4) narratives of change. These concepts, invoking insights from transitions studies and social innovations literature, are used to construct a conceptual account of how transformative social innovation...

School Choice or the Politics of Desperation? Black and Latinx Parents of Students with Dis/Abilities Selecting Charter Schools in Chicago

Science.gov (United States)

Waitoller, Federico R.; Super, Gia

2017-01-01

In this paper, we focus on the city of Chicago to examine how Black and Latinx parents of students with dis/abilities1 engage with school choice. Using analytical tools from grounded theory (Strauss & Corbin, 1990) and a theoretical lens informed by critical notions of space, race and dis/ability, we analyze interviews with parents of students…

Recent COMPASS results on the nucleon longitudinal spin structure and QCD fits

Directory of Open Access Journals (Sweden)

Andrieux Vincent

2014-01-01

Full Text Available The latest measurements of the proton longitudinal spin structure function, ɡ1p, in the deep inelastic (DIS regime are presented. They improve the statistical accuracy of the existing data and extend the kinematic domain to a lower value of x and higher values of Q2. A global NLO QCD fit of all ɡ1 world data on the proton, deuteron and neutron has been achieved. The results give a quantification of the quark spin contribution to the nucleon spin, 0.26 < ΔΣ < 0.34 at 3 (GeV/c2 in M̅S̅ scheme. The errors are dominated by the uncertainty on the shape of the functional forms assumed in the fit. A new verification of the fundamental Bjorken sum rule is obtained at a 9% level, using only COMPASS ɡ1 proton and deuteron measurements. Preliminary results of a reevaluation of the gluon polarization Δɡ/ɡ are presented. The analysis is based on double spin asymmetry of high-pT hadron production cross-sections in the DIS regime. A positive value of 〈Δɡ/ɡ〉 = 0.113 ± 0.038 ± 0.035 is obtained at leading order at x ~ 0.1. In parallel, the double spin asymmetry in the photoproduction regime is also studied. Finally, preliminary results on quark fragmentation functions into pions extracted from a LO fit of pion multiplicities in semi-inclusive DIS are presented.

A New Theoretical Approach to Postsecondary Student Disability: Disability-Diversity (Dis)Connect Model

Science.gov (United States)

Aquino, Katherine C.

2016-01-01

Disability is often viewed as an obstacle to postsecondary inclusion, but not a characteristic of student diversity. Additionally, current theoretical frameworks isolate disability from other student diversity characteristics. In response, a new conceptual framework, the Disability-Diversity (Dis)Connect Model (DDDM), was created to address…

Distorted spin dependent spectral function of {sup 3}He and semi-inclusive deep inelastic scattering processes

Energy Technology Data Exchange (ETDEWEB)

Kaptari, Leonya P. [University of Perugia (Italy); INFN-Perugia (Italy); Thomas Jefferson National Accelerator Facility, Newport News, VA (United States); Joint Inst. for Nuclear Research, Dubna (Russia); Del Dotto, Alessio [University of Rome, Rome (Italy); INFN-Roma (Italy); Pace, Emanuele [University of Rome (Italy); INFN-Tor Vergata (Italy); Salme, Giovanni [INFN-Roma (Italy); Scopetta, Sergio [University of Perugia (Italy); INFN-Perugia (Italy)

2014-03-01

The spin dependent spectral function, relevant to describe polarized electron scattering off polarized {sup 3}He, is studied, within the Plane Wave Impulse Approximation and taking into account final state interaction effects (FSI). In particular, the case of semi-inclusive deep inelastic scattering (SiDIS) is considered, evaluating the FSI of the hadronizing quark with the nuclear remnants. It is shown that particular kinematical regions can be selected to minimize the latter effects, so that parton distributions in the neutron can be accessed. On the other side, in the regions where FSI dominates, the considered reactions can elucidate the mechanism of hadronization of quarks during the propagation in the nuclear medium. It is shown that the obtained spin dependent spectral function can be directly applied to investigate the SiDIS reaction e-vector + {sup 3}He-vector to h+X, where the hadron h originates from the current fragmentation. Experiments of this type are being performed at JLab to extract neutron transverse momentum dependent parton distributions. As a case study, a different SiDIS process, with detection of slow (A-1) systems in the final state, is considered in more details, in order to establish when nuclear structure effects and FSI can be distinguished from elementary reactions on quasi-free nucleons. It is argued that, by a proper choice of kinematics, the origin of nuclear effects in polarized DIS phenomena and the details of the interaction between the hadronizing quark and the nuclear medium can be investigated at a level which is not reachable in inclusive deep inelastic scattering.

Hydrogen induced dis-proportionation studies on Zr-Co-M (M=Ni, Fe, Ti) ternary alloys

International Nuclear Information System (INIS)

Jat, Ram Avtar; Pati, Subhasis; Parida, S.C.; Agarwal, Renu; Mukerjee, S.K.; Sastry, P.U.; Jayakrishnan, V.B.

2016-01-01

The intermetallic compound ZrCo is considered as a suitable material for storage, supply and recovery of hydrogen isotopes in International Thermonuclear Experimental Reactor (ITER). However, upon repeated hydriding-dehydriding cycles, the hydrogen storage capacity of ZrCo decreases, which is attributed to the disproportionate reaction ZrCo + H 2 ↔ ZrH 2 + ZrCo 2 . The reduction of hydrogen storage capacity of ZrCo is not desirable for its use in tritium facilities. In our previous studies, attempts were made to improve the durability of ZrCo against dis-proportionation by including a third element. The present study is aimed to investigate the hydrogen induced dis-proportionation of Zr-Co-M (M=Ni, Fe and Ti) ternary alloys under hydrogen delivery conditions

Phenomenology of leading nucleon production in e p collisions at HERA in the framework of fracture functions

Science.gov (United States)

Shoeibi, Samira; Taghavi-Shahri, F.; Khanpour, Hamzeh; Javidan, Kurosh

2018-04-01

In recent years, several experiments at the e-p collider HERA have collected high precision deep-inelastic scattering (DIS) data on the spectrum of leading nucleon carrying a large fraction of the proton's energy. In this paper, we have analyzed recent experimental data on the production of forward protons and neutrons in DIS at HERA in the framework of a perturbative QCD. We propose a technique based on the fractures functions framework, and extract the nucleon fracture functions (FFs) M2(n /p )(x ,Q2;xL) from global QCD analysis of DIS data measured by the ZEUS Collaboration at HERA. We have shown that an approach based on the fracture functions formalism allows us to phenomenologically parametrize the nucleon FFs. Considering both leading neutron as well as leading proton production data at HERA, we present the results for the separate parton distributions for all parton species, including valence quark densities, the antiquark densities, the strange sea distribution, and the gluon distribution functions. We proposed several parametrizations for the nucleon FFs and open the possibility of these asymmetries. The obtained optimum set of nucleon FFs is accompanied by Hessian uncertainty sets which allow one to propagate uncertainties to other observables interest. The extracted results for the t -integrated leading neutron F2LN (3 )(x ,Q2;xL) and leading proton F2LP (3 )(x ,Q2;xL) structure functions are in good agreement with all data analyzed, for a wide range of fractional momentum variable x as well as the longitudinal momentum fraction xL.

DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases.

Science.gov (United States)

Queralt-Rosinach, Núria; Piñero, Janet; Bravo, Àlex; Sanz, Ferran; Furlong, Laura I

2016-07-15

DisGeNET-RDF makes available knowledge on the genetic basis of human diseases in the Semantic Web. Gene-disease associations (GDAs) and their provenance metadata are published as human-readable and machine-processable web resources. The information on GDAs included in DisGeNET-RDF is interlinked to other biomedical databases to support the development of bioinformatics approaches for translational research through evidence-based exploitation of a rich and fully interconnected linked open data. http://rdf.disgenet.org/ support@disgenet.org. © The Author 2016. Published by Oxford University Press.

[(Dis)satisfaction with mental healthcare work: a study in Psychosocial Care Centers].

Science.gov (United States)

Guimarães, José Maria Ximenes; Jorge, Maria Salete Bessa; Assis, Marluce Maria Araújo

2011-04-01

The scope of this article is to analyze satisfaction in the workplace of mental healthcare professionals who serve in Psychosocial Care Centers (Caps). The research is of a qualitative nature and the data-collecting medium was semistructured interviews with 19 workers of three Caps in Fortaleza, in the Northern Brazilian State of Ceará. The treatment of the empirical material was based upon the analysis of content with an emphasis on the thematic bias. The results revealed the determinants of (dis)satisfaction present in the daily routine of these workers. The relationships established with the users were singled out as the main source of satisfaction, whereas the work and wage conditions were the main motives for dissatisfaction. In addition to these aspects, consequences of (dis)satisfaction at work in the private, social and organizational field of the workers' life in the Caps were revealed, mainly in physical and mental health. Lastly, they emphasized the urgent need for implementation - on the part of public administration - of strategies that seek to reduce the precariousness of healthcare work, especially in mental health, with a view to mitigating damages potentially caused by such work.

MetSigDis: a manually curated resource for the metabolic signatures of diseases.

Science.gov (United States)

Cheng, Liang; Yang, Haixiu; Zhao, Hengqiang; Pei, Xiaoya; Shi, Hongbo; Sun, Jie; Zhang, Yunpeng; Wang, Zhenzhen; Zhou, Meng

2017-08-22

Complex diseases cannot be understood only on the basis of single gene, single mRNA transcript or single protein but the effect of their collaborations. The combination consequence in molecular level can be captured by the alterations of metabolites. With the rapidly developing of biomedical instruments and analytical platforms, a large number of metabolite signatures of complex diseases were identified and documented in the literature. Biologists' hardship in the face of this large amount of papers recorded metabolic signatures of experiments' results calls for an automated data repository. Therefore, we developed MetSigDis aiming to provide a comprehensive resource of metabolite alterations in various diseases. MetSigDis is freely available at http://www.bio-annotation.cn/MetSigDis/. By reviewing hundreds of publications, we collected 6849 curated relationships between 2420 metabolites and 129 diseases across eight species involving Homo sapiens and model organisms. All of these relationships were used in constructing a metabolite disease network (MDN). This network displayed scale-free characteristics according to the degree distribution (power-law distribution with R2 = 0.909), and the subnetwork of MDN for interesting diseases and their related metabolites can be visualized in the Web. The common alterations of metabolites reflect the metabolic similarity of diseases, which is measured using Jaccard index. We observed that metabolite-based similar diseases are inclined to share semantic associations of Disease Ontology. A human disease network was then built, where a node represents a disease, and an edge indicates similarity of pair-wise diseases. The network validated the observation that linked diseases based on metabolites should have more overlapped genes. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

SL1 revisited: functional analysis of the structure and conformation of HIV-1 genome RNA.

Science.gov (United States)

Sakuragi, Sayuri; Yokoyama, Masaru; Shioda, Tatsuo; Sato, Hironori; Sakuragi, Jun-Ichi

2016-11-11

The dimer initiation site/dimer linkage sequence (DIS/DLS) region of HIV is located on the 5' end of the viral genome and suggested to form complex secondary/tertiary structures. Within this structure, stem-loop 1 (SL1) is believed to be most important and an essential key to dimerization, since the sequence and predicted secondary structure of SL1 are highly stable and conserved among various virus subtypes. In particular, a six-base palindromic sequence is always present at the hairpin loop of SL1 and the formation of kissing-loop structure at this position between the two strands of genomic RNA is suggested to trigger dimerization. Although the higher-order structure model of SL1 is well accepted and perhaps even undoubted lately, there could be stillroom for consideration to depict the functional SL1 structure while in vivo (in virion or cell). In this study, we performed several analyses to identify the nucleotides and/or basepairing within SL1 which are necessary for HIV-1 genome dimerization, encapsidation, recombination and infectivity. We unexpectedly found that some nucleotides that are believed to contribute the formation of the stem do not impact dimerization or infectivity. On the other hand, we found that one G-C basepair involved in stem formation may serve as an alternative dimer interactive site. We also report on our further investigation of the roles of the palindromic sequences on viral replication. Collectively, we aim to assemble a more-comprehensive functional map of SL1 on the HIV-1 viral life cycle. We discovered several possibilities for a novel structure of SL1 in HIV-1 DLS. The newly proposed structure model suggested that the hairpin loop of SL1 appeared larger, and genome dimerization process might consist of more complicated mechanism than previously understood. Further investigations would be still required to fully understand the genome packaging and dimerization of HIV.

Singlet structure function F_1 in double-logarithmic approximation

Science.gov (United States)

Ermolaev, B. I.; Troyan, S. I.

2018-03-01

The conventional ways to calculate the perturbative component of the DIS singlet structure function F_1 involve approaches based on BFKL which account for the single-logarithmic contributions accompanying the Born factor 1 / x. In contrast, we account for the double-logarithmic (DL) contributions unrelated to 1 / x and because of that they were disregarded as negligibly small. We calculate the singlet F_1 in the double-logarithmic approximation (DLA) and account at the same time for the running α _s effects. We start with a total resummation of both quark and gluon DL contributions and obtain the explicit expression for F_1 in DLA. Then, applying the saddle-point method, we calculate the small- x asymptotics of F_1, which proves to be of the Regge form with the leading singularity ω _0 = 1.066. Its large value compensates for the lack of the factor 1 / x in the DLA contributions. Therefore, this Reggeon can be identified as a new Pomeron, which can be quite important for the description of all QCD processes involving the vacuum (Pomeron) exchanges at very high energies. We prove that the expression for the small- x asymptotics of F_1 scales: it depends on a single variable Q^2/x^2 only instead of x and Q^2 separately. Finally, we show that the small- x asymptotics reliably represent F_1 at x ≤ 10^{-6}.

Semi-inclusive DIS Experiments Using Transversely Polarized Targets in Hall-A: Current Results and Future Plans

Directory of Open Access Journals (Sweden)

Allada Kalyan

2012-12-01

Full Text Available Measurement of single (SSA and double spin asymmetries (DSA in semiinclusive DIS reactions using polarized targets provide a powerful method to probe transverse momentum dependent parton distribution functions (TMDs. In particular, the experimentally measured SSA on nucleon targets can help in extracting the transversity and Sivers distribution functions of u and d-quarks. Similarly, the measured DSA are sensitive to the quark spin-orbital correlations, and provide an access to the TMD parton distribution function (g1T. A recent experiment conducted in Hall-A Jefferson Lab using transversely polarized 3He provide first such measurements on “effective” neutron target. The measurement was performed using 5.9 GeV beam from CEBAF and measured the target SSA/DSA in the SIDIS reaction 3He↑(e, e′π±X. The kinematical range, x = 0.19 ~ 0.34, at Q2 = 1.77 ~ 2.73 (GeV/c2, was focused on the valence quark region. The results from this measurement along with our plans for future high precision measurements in Hall-A are presented.

Wangai et al., Afr. J. Infect. Dis. (2011) 5(1): 1 - 6 SENSITIVITY OF ...

African Journals Online (AJOL)

AJTCAM

Wangai et al., Afr. J. Infect. Dis. (2011) 5(1): 1 - 6. 1. SENSITIVITY OF MICROSCOPY COMPARED TO MOLECULAR DIAGNOSIS OF P. FALCIPARUM: IMPLICATIONS ON MALARIA TREATMENT IN EPIDEMIC AREAS IN. KENYA. Laura Nyawira Wangai 1,2, Muriira Geoffrey Karau 3, Paul Nthakanio Njiruh 4, Omar Sabah 5 ...

A J–function for inhomogeneous point processes

NARCIS (Netherlands)

M.N.M. van Lieshout (Marie-Colette)

2010-01-01

htmlabstractWe propose new summary statistics for intensity-reweighted moment stationary point processes that generalise the well known J-, empty space, and nearest-neighbour distance dis- tribution functions, represent them in terms of generating functionals and conditional intensities, and relate

Moments of F₂ Structure Functions and Multiparton Correlations in Nuclei

Energy Technology Data Exchange (ETDEWEB)

Osipenko, Mikhail [Moscow State Univ., Moscow (Russian Federation)

2002-10-01

The inclusive inelastic electron scattering o the proton was measured at five different beam energies 1.5, 2.5, 4.0, 4.2 and 4.4 GeV. The data were taken, during February-March 1999, on a liquid hydrogen target with the CLAS detector installed in Hall-B of the Thomas Jefferson National Accelerator Facility (TJNAF). The obtained high statistics and high precision data appear to be in good agreement with previously measured world data and permit to integrate experimental values of F₂ over x at fixed Q² , allowing for the first time the evaluation of its experimental moments at low and moderate values of Q² . In a combined analysis of CLAS and world data, the Q²-evolution of the experimental moments was explored in the range from 0.3 up to 100 GeV² . This offered a unique possibility to trace changes of the proton structure function from hard DIS down to the non-perturbative regime through the transition region, which is of particular interest for the TJNAF physics program. The obtained experimental moments allowed to perform a separation between the leading twist, calculable in the framework of the perturbative QCD (pQCD), and higher twists, treated effectively. A comparison with theoretical predictions based either on lattice QCD simulations or obtained within models of the nucleon structure may represent an important test of our understanding of the nucleon structure as observed at large wavelengths.

High spin structure functions

International Nuclear Information System (INIS)

Khan, H.

1990-01-01

This thesis explores deep inelastic scattering of a lepton beam from a polarized nuclear target with spin J=1. After reviewing the formation for spin-1/2, the structure functions for a spin-1 target are defined in terms of the helicity amplitudes for forward compton scattering. A version of the convolution model, which incorporates relativistic and binding energy corrections is used to calculate the structure functions of a neutron target. A simple parameterization of these structure functions is given in terms of a few neutron wave function parameters and the free nucleon structure functions. This allows for an easy comparison of structure functions calculated using different neutron models. (author)

New heavy flavor contributions to the DIS structure function F{sub 2}(x,Q{sup 2}) at O({alpha}{sub s}{sup 3})

Energy Technology Data Exchange (ETDEWEB)

Ablinger, J. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Johannes Kepler Univ., Linz (Austria). RISC; Bluemlein, J.; Hasselhuhn, A.; Wissbrock, F. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Klein, S. [RWTH Aachen Univ., Aachen (Germany). Inst. fuer Theoretische Teilchenphysik und Kosmologie; Schneider, C. [Johannes Kepler Univ., Linz (Austria). RISC

2012-02-15

We report on recent results obtained for the massive Wilson coefficients which contribute to the structure function F{sub 2}(x,Q{sup 2}) at O({alpha}{sub s}{sup 3}) in the region Q{sup 2}/m{sup 2}>or similar 10. In the calculation new species of harmonic sums and harmonic polylogarithms generated by cyclotomic polynomials arise in intermediary results which are briefly discussed. (orig.)

Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3′ Uridylated Intermediates Degraded by DIS3L2

Directory of Open Access Journals (Sweden)

Marshall P. Thomas

2015-05-01

Full Text Available Apoptosis is a tightly coordinated cell death program that damages mitochondria, DNA, proteins, and membrane lipids. Little is known about the fate of RNA as cells die. Here, we show that mRNAs, but not noncoding RNAs, are rapidly and globally degraded during apoptosis. mRNA decay is triggered early in apoptosis, preceding membrane lipid scrambling, genomic DNA fragmentation, and apoptotic changes to translation initiation factors. mRNA decay depends on mitochondrial outer membrane permeabilization and is amplified by caspase activation. 3′ truncated mRNA decay intermediates with nontemplated uridylate-rich tails are generated during apoptosis. These tails are added by the terminal uridylyl transferases (TUTases ZCCHC6 and ZCCHC11, and the uridylated transcript intermediates are degraded by the 3′ to 5′ exonuclease DIS3L2. Knockdown of DIS3L2 or the TUTases inhibits apoptotic mRNA decay, translation arrest, and cell death, whereas DIS3L2 overexpression enhances cell death. Our results suggest that global mRNA decay is an overlooked hallmark of apoptosis.

Controversial Embodiment: Sport, Masculinity, Dis/Ability

Directory of Open Access Journals (Sweden)

Marilena Parlati

2015-11-01

Full Text Available This essay is an attempt at investigating visible forms of complex, indeed controversial embodiment, with the specific intention of concentrating on the ways they interrogate delicate issues such as disability, masculinity and prosthetic sport performance. I intend to sound the shifting boundaries between dis-ability and super-ability as manifested in iconic figures such as Stelarc and, in other fields, Oscar Pistorius, whose unsteady position as privileged/disabled bladerunner seems to require – and indeed to gather – particularly intense scrutiny. I shall introduce a few contemporary discourses on corporeality and embodiment, which focus on the ‘troubling’ nature of auxiliary organs Freud refers to in the much contended paragraph I adopt as epigraph and guiding procedural light; I shall move from Butler and Giddens to Jean-Luc Nancy’s work on transplants and/as prostheses to include theoretical debates on disintegrating embodiment and disability studies, in order to proceed towards an analysis of the short-circuiting of allegedly secure practices of (masculine embodiment in sport culture and theory.

The etiology of mathematical and reading (dis)ability covariation in a sample of Dutch twins

NARCIS (Netherlands)

Markowitz, E.M.; Willemsen, A.H.M.; Trumbetta, S.L.; van Beijsterveldt, C.E.M.; Boomsma, D.I.

2005-01-01

The genetic etiology of mathematical and reading (dis)ability has been studied in a number of distinct samples, but the true nature of the relationship between the two remains unclear. Data from the Netherlands Twin Register was used to determine the etiology of the relationship between mathematical

MODIS information, data and control system (MIDACS) level 2 functional requirements

Science.gov (United States)

Han, D.; Salomonson, V.; Ormsby, J.; Sharts, B.; Folta, D.; Ardanuy, P.; Mckay, A.; Hoyt, D.; Jaffin, S.; Vallette, B.

1988-01-01

The MODIS Information, Data and Control System (MIDACS) Level 2 Functional Requirements Document establishes the functional requirements for MIDACS and provides a basis for the mutual understanding between the users and the designers of the EosDIS, including the requirements, operating environment, external interfaces, and development plan. In defining the requirements and scope of the system, this document describes how MIDACS will operate as an element of the EOS within the EosDIS environment. This version of the Level 2 Requirements Document follows an earlier release of a preliminary draft version. The sections on functional and performance requirements do not yet fully represent the requirements of the data system needed to achieve the scientific objectives of the MODIS instruments and science teams. Indeed, the team members have not yet been selected and the team has not yet been formed; however, it has been possible to identify many relevant requirements based on the present concept of EosDIS and through interviews and meetings with key members of the scientific community. These requirements have been grouped by functional component of the data system, and by function within each component. These requirements have been merged with the complete set of Level 1 and Level 2 context diagrams, data flow diagrams, and data dictionary.

Hadron structure functions

International Nuclear Information System (INIS)

Martin, F.

1981-03-01

The x dependence of hadron structure functions is investigated. If quarks can exist in very low mass states (10 MeV for d and u quarks) the pion structure function is predicted to behave like (1-x) and not (1-x) 2 in a x-region around 1. Relativistic and non-relativistic quark bound state pictures of hadrons are considered together with their relation with the Q 2 evolution of structure functions. Good agreement with data is in general obtained

Photon structure function

International Nuclear Information System (INIS)

Bardeen, W.A.

1980-11-01

Theoretical understanding of the photon structure function is reviewed. As an illustration of the pointlike component, the parton model is briefly discussed. However, the systematic study of the photon structure function is presented through the framework of the operator product expansion. Perturbative QCD is used as the theoretical basis for the calculation of leading contributions to the operator product expansion. The influence of higher order QCD effects on these results is discussed. Recent results for the polarized structure functions are discussed

Measurement of the Spin Structure of the Deuteron in the DIS Region

CERN Document Server

Ageev, E.S.; Alexandrov, Yu.; Alexeev, G.D.; Amoroso, A.; Badelek, B.; Balestra, F.; Ball, J.; Baum, G.; Bedfer, Y.; Berglund, P.; Bernet, C.; Bertini, R.; Birsa, R.; Bisplinghoff, J.; Bordalo, P.; Bradamante, F.; Bravar, A.; Bressan, A.; Burtin, E.; Bussa, M.P.; Bytchkov, V.N.; Cerini, L.; Chapiro, A.; Cicuttin, A.; Colantoni, M.; Colavita, A.A.; Costa, S.; Crespo, M.L.; d'Hose, N.; Dalla Torre, S.; Dasgupta, S.S.; De Masi, R.; Dedek, N.; Denisov, O.Yu.; Dhara, L.; Diaz Kavka, V.; Dinkelbach, A.M.; Dolgopolov, A.V.; Donskov, S.V.; Dorofeev, V.A.; Doshita, N.; Duic, V.; Dunnweber, W.; Ehlers, J.; Eversheim, P.D.; Eyrich, W.; Fabro, M.; Faessler, M.; Falaleev, V.; Fauland, P.; Ferrero, A.; Ferrero, L.; Finger, M.; Finger, M., Jr.; Fischer, H.; Franz, J.; Friedrich, J.M.; Frolov, V.; Fuchs, U.; Garfagnini, R.; Gautheron, F.; Gavrichtchouk, O.P.; Gerassimov, S.; Geyer, R.; Giorgi, M.; Gobbo, B.; Goertz, S.; Gorin, A.M.; Grajek, O.; Grasso, A.; Grube, B.; Grunemaier, A.; Hannappel, J.; von Harrach, D.; Hasegawa, T.; Hedicke, S.; Heinsius, F.H.; Hermann, R.; Hess, C.; Hinterberger, F.; von Hodenberg, M.; Horikawa, N.; Horikawa, S.; Ijaduola, R.B.; Ilgner, C.; Ioukaev, A.I.; Ishimoto, S.; Ivanov, O.; Iwata, T.; Jahn, R.; Janata, A.; Joosten, R.; Jouravlev, N.I.; Kabuss, E.; Kalinnikov, V.; Kang, D.; Karstens, F.; Kastaun, W.; Ketzer, B.; Khaustov, G.V.; Khokhlov, Yu.A.; Khomutov, N.V.; Kisselev, Yu.; Klein, F.; Koblitz, S.; Koivuniemi, J.H.; Kolosov, V.N.; Komissarov, E.V.; Kondo, K.; Konigsmann, Kay; Konoplyannikov, A.K.; Konorov, I.; Konstantinov, V.F.; Korentchenko, A.S.; Korzenev, A.; Kotzinian, A.M.; Koutchinski, N.A.; Kowalik, K.; Kravchuk, N.P.; Krivokhizhin, G.V.; Kroumchtein, Z.V.; Kuhn, R.; Kunne, F.; Kurek, K.; Ladygin, M.E.; Lamanna, M.; Le Goff, J.M.; Leberig, M.; Lichtenstadt, J.; Liska, T.; Ludwig, I.; Maggiora, A.; Maggiora, M.; Magnon, A.; Mallot, G.K.; Manuilov, I.V.; Marchand, C.; Marroncle, J.; Martin, A.; Marzec, J.; Matsuda, T.; Maximov, A.N.; Medved, K.S.; Meyer, W.; Mielech, A.; Mikhailov, Yu.V.; Moinester, M.A.; Nahle, O.; Nassalski, J.; Neliba, S.; Neyret, D.P.; Nikolaenko, V.I.; Nozdrin, A.A.; Obraztsov, V.F.; Olshevsky, A.G.; Ostrick, M.; Padee, A.; Pagano, P.; Panebianco, S.; Panzieri, D.; Paul, S.; Pereira, H.D.; Peshekhonov, D.V.; Peshekhonov, V.D.; Piragino, G.; Platchkov, S.; Platzer, K.; Pochodzalla, J.; Polyakov, V.A.; Popov, A.A.; Pretz, J.; Quintans, C.; Ramos, S.; Rebourgeard, P.C.; Reicherz, G.; Reymann, J.; Rith, K.; Rojdestvenski, A.M.; Rondio, E.; Sadovski, A.B.; Saller, E.; Samoylenko, V.D.; Sandacz, A.; Sapozhnikov, M.G.; Savin, Igor A.; Schiavon, P.; Schill, C.; Schmidt, T.; Schmitt, L.; Schmitt, H.; Shevchenko, O.Yu.; Shishkin, A.A.; Siebert, H.; Sinha, L.; Sissakian, A.N.; Skachkova, A.; Slunecka, M.; Smirnov, G.I.; Sugonyaev, V.P.; Srnka, A.; Stinzing, F.; Stolarski, M.; Sulc, M.; Sulej, R.; Takabayashi, N.; Tchalishev, V.V.; Thers, D.; Tessarotto, F.; Teufel, A.; Tkatchev, L.G.; Toeda, T.; Tretyak, V.I.; Trusov, Sergey V.; Varanda, M.; Virius, M.; Vlassov, N.V.; Wagner, M.; Walcher, T.; Webb, R.; Weise, E.; Weitzel, Q.; Wiesmann, M.; Windmolders, R.; Wirth, S.; Wislicki, W.; Zanetti, A.M.; Zaremba, K.; Zhao, J.; Ziegler, R.; Zvyagin, A.

2005-01-01

We present a new measurement of the longitudinal spin asymmetry A_1^d and the spin-dependent structure function g_1^d of the deuteron in the range 1 GeV^2 < Q^2 < 100 GeV^2 and 0.004< x <0.7. The data were obtained by the COMPASS experiment at CERN using a 160 GeV polarised muon beam and a large polarised 6-LiD target. The results are in agreement with those from previous experiments and improve considerably the statistical accuracy in the region 0.004 < x < 0.03.

Functional MRI of the kidneys

OpenAIRE

Zhang, Jeff L.; Rusinek, Henry; Chandarana, Hersh; Lee, Vivian S.

2013-01-01

Renal function is characterized by different physiologic aspects, including perfusion, glomerular filtration, interstitial diffusion and tissue oxygenation. MRI shows great promise in assessing these renal tissue characteristics noninvasively. The last decade has witnessed a dramatic progress in MRI techniques for renal function assessment. This article briefly describes relevant renal anatomy and physiology, reviews the applications of functional MRI techniques for the diagnosis of renal dis...

Multi-functional composite structures

Science.gov (United States)

Mulligan, Anthony C.; Halloran, John; Popovich, Dragan; Rigali, Mark J.; Sutaria, Manish P.; Vaidyanathan, K. Ranji; Fulcher, Michael L.; Knittel, Kenneth L.

2004-10-19

Fibrous monolith processing techniques to fabricate multifunctional structures capable of performing more than one discrete function such as structures capable of bearing structural loads and mechanical stresses in service and also capable of performing at least one additional non-structural function.

Measurement of the proton structure function FL(x,Q2) with the H1 detector at HERA

International Nuclear Information System (INIS)

Piec, Sebastian

2010-12-01

A measurement of the inclusive cross section for the deep-inelastic scattering of positrons on protons at low four-momentum transfer squared Q 2 is presented. The measurement is used for the extraction of the longitudinal proton structure function F L . The analysis is based on data collected by the H1 experiment during special, low energy runs in the year 2007. The direct technique of the F L determination based on the extraction of the reduced DIS cross sections for three different centre-of-mass energies is used. For the purpose of the analysis a dedicated electron finder has been developed and integrated with the standard H1 reconstruction software H1REC. The algorithm employs information from two independent tracking detectors the Backward Silicon Tracker and the Central Jet Chamber. The performance of the finder is studied. The thesis presents the cross section and the F L measurements in the range of 2.5 GeV 2 ≤Q 2 ≤25 GeV 2 . (orig.)

Thumbs Up for Refugees? : Influences of Online News Content and (Dis)Likes on Self-Reported Perceptions.

NARCIS (Netherlands)

Greijdanus, Hedy

2016-01-01

An extensive body of research on social validation indicates that people feel strengthened in their views and opinions when others agree with them. Notions of the extent of others' (dis)agreement can stem from conversations or other forms of interpersonal communication, but also from what one reads

Im/mobilities and dis/connectivities in medical globalisation: How global is Global Health?

Science.gov (United States)

Dilger, Hansjörg; Mattes, Dominik

2018-03-01

The interdisciplinary, politically contested field of Global Health has often been described as a consequence of, and response to, an intensification of the mobilities of, and connectivities between, people, pathogens, ideas, and infrastructure across national borders and large distances. However, such global mobilities and connectivities are not as omnidirectional and unpatterned as the rhetoric of many Global Health actors suggests. Instead, we argue that they are suffused by a plethora of institutional, national, and global political agendas, and substantially shaped by transnational and postcolonial power relations. Furthermore, the configurations that are typically subsumed under the category of Global Health represent only a minor part of the range of im/mobilities and dis/connectivities that are essential for understanding transformations of epidemiological patterns, health care infrastructures, and the responses to health-related challenges in a globalising world. In order to broaden such a limiting analytical perspective, we propose to expand the analytical focus in studying Global Health phenomena by paying close attention to the myriad ways in which particular im/mobilities and dis/connectivities constitute medicine and well-being in global and transnational settings. Pursuing a conceptual shift from studies of 'Global Health' to studying 'medical globalization' may carve out new analytical ground for such an endeavour.

Unpolarized Structure Functions

International Nuclear Information System (INIS)

Christy, M.E.; Melnitchouk, W.

2011-01-01

Over the past decade measurements of unpolarized structure functions with unprecedented precision have significantly advanced our knowledge of nucleon structure. These have for the first time allowed quantitative tests of the phenomenon of quark-hadron duality, and provided a deeper understanding of the transition from hadron to quark degrees of freedom in inclusive scattering. Dedicated Rosenbluth-separation experiments have yielded high-precision transverse and longitudinal structure functions in regions previously unexplored, and new techniques have enabled the first glimpses of the structure of the free neutron, without contamination from nuclear effects.

Chains of (dis)trust : Exploring the underpinnings of knowledge-sharing and quality care across mental health services

NARCIS (Netherlands)

Brown, P.R.; Calnan, M.W.

Quality and safety in healthcare settings are underpinned by organisational cultures, which facilitate or impede the refinement, sharing and application of knowledge. Avoiding the use of the term culture as a residual category, we focus specifically on describing chains of (dis)trust, analysing

Egwuatu et al., Afr., J. Infect. Dis. (2017) 11 (1): 18-25 http://dx.doi ...

African Journals Online (AJOL)

PROF ADEWUNMI

Dis. (2017) 11 (1): 18-25 http://dx.doi.org/10.21010/ajid.v11i1.3. 18. EFFECT OF ... resistant isolates of Escherichia coli in HIV-infected adult patients in Lagos. .... Institute for Medical Research (NIMR), Yaba both in Nigeria. ..... with HIV/AIDS in Africa 2000. http://www.unaids.org/publications/documents/care/general/ ...

Diffractive D{sup *}-mesons production in DIS at HERA

Energy Technology Data Exchange (ETDEWEB)

Vinokurova, Svetlana

2010-05-15

This thesis presents a measurement of the cross sections for the production of the charmed mesons in diffractive deep inelastic positron-proton scattering (DIS) interactions of the type ep{yields}eXY, where the system X is separated from a low-mass system Y, by a large rapidity gap where no particles are observed. These diffractive processes can be explained as a result of the exchange of a strongly interacting colour singlet object between the final state particles. In this measurement data taken with the H1 detector in the years 1999-2000, corresponding to an integrated luminosity of L{sub int}=46.7 pb{sup -1} are used. Inclusive DIS events are selected in the kinematic range with the momentum transfer Q{sup 2} element of [2;100] GeV and inelasticity y{sub bj} element of [0.05;07]. The charm quark is tagged by requiring a D{sup *} meson decaying into the channel D{sup *}{yields}D{sup 0}{pi}{sub slow}{yields}K{pi}{pi}{sub slow} inside the central tracking system with transverse momenta p{sub t}(D{sup *})>2 GeV. The forward components of the H1 detector are used to select genuine diffractive events on the basis of the forward sub-detectors activity and of the presence a large rapidity gap in the final state hadrons. The visible charm production cross sections are measured in the diffractive kinematic range M{sub Y} < 1.6 GeV, vertical stroke t vertical stroke < 1 GeV{sup 2} and x{sub P} < 0.04 to be {sigma}(ep{yields}e{sup '}(D{sup *}X)Y)=249{+-}31(stat.){+-}30(sys) pb, where the first uncertainty is statistical and the second systematic. The shape of the differential distributions for diffractive D{sup *} production are well described by the collinear factorisation model which is implemented in the Monte Carlo simulation RAPGAP. (orig.)

Prayer and the Registered Nurse (PRN): nurses' reports of ease and dis-ease with patient-initiated prayer request.

Science.gov (United States)

Minton, Mary E; Isaacson, Mary; Banik, Deborah

2016-09-01

To explore nurse comfort with patient-initiated prayer request scenarios. Spiritual care is fundamental to patient care evidenced by Joint Commission requirement of a spiritual assessment on a patient's hospital admission. Prayer is an assessment component. Patients may seek solace and support by requesting prayer from the bedside nurse, the nurse may lack confidence in responding. Absent in the literature are reports specific to nurses' comfort when patients initiate prayer requests. Cross-sectional mixed methods study. Data were collected in early 2014 from 134 nurses in the USA via an online survey using QuestionPro. The qualitative results reported here were collated by scenario and analysed using thematic analysis. The scenario responses revealed patterns of ease and dis-ease in response to patient requests for prayer. The pattern of ease of prayer with patients revealed three themes: open to voice of calm or silence; physical or spiritual; can I call the chaplain. For these nurses, prayer is a natural component of nursing care, as the majority of responses to all scenarios demonstrated an overwhelming ease in response and capacity to pray with patients on request. The pattern of dis-ease of prayer with patients distinguished two themes: cautious hesitancy and whose God. These nurses experienced dis-ease with the patient's request no matter the situation. Educators and administrators must nurture opportunities for students and nurses to learn about and engage in the reflective preparation needed to respond to patient prayer requests. © 2016 John Wiley & Sons Ltd.

Physical activity 11-15 years old children with oncological disease: pilot study disHBSC

Directory of Open Access Journals (Sweden)

Tomáš Vyhlídal

2016-12-01

Full Text Available Background: As of 1993, the Czech and Slovak Republic, along with other countries of Europe and North America, participating in regular intervals to 4 year international project HBSC (Health Behavior in The School-aged Children, for our purposes disHBSC - "with disability". The main objective of this research study is to identify determinants of health and lifestyle pupils and compare the results on the international level. Up to this time, however, the research could not include pupils with disabilities and physical handicaps. On the initiative of WHO were within these categories in the survey also included pupils with cancer. In order to integrate these students, a new study disHBSC, which aims to increase knowledge of health and health behaviors, related to them this target group. Objectives: The aim of the research investigation is to determine the selected determinants affecting the participation of pupils with oncological diseases in the age 11-15 years in physical activities. Part of the aim is to find out their self-assessment and aspiration level, which with the realization of physical activities can immediately relate to. The purpose of the investigation is, however, in particular the pilot revealed any organizational and substantive uncertainties and upgrade research technique with regard to the needs and options of the target group. Methods: The research survey used a pilot version of the questionnaire protocol disHBSC. This pilot version is derived from the questionnaire protocol that was used in 2010 and based on the international version of the questionnaire HBSC. A pilot version of the questionnaire contained 41 questions, which are divided into several thematic areas - basic sociodemographic characteristics and behaviors specific areas (which have a significant relationship to physical and mental health of children and youth youth health, eating habits, physical activity and leisure use substance abuse, self-esteem and

Photon structure function - theory

International Nuclear Information System (INIS)

Bardeen, W.A.

1984-12-01

The theoretical status of the photon structure function is reviewed. Particular attention is paid to the hadronic mixing problem and the ability of perturbative QCD to make definitive predictions for the photon structure function. 11 references

Nuclear correlations and structure functions

International Nuclear Information System (INIS)

Hu Guoju; Irvine, J.M.

1989-01-01

It is argued that the search for a mass number dependence of the nuclear structure function per nucleon is profitably directed to the region of Bjorken scaling variable x > 1. We show that in the convolution model of the nuclear structure function the nuclear momentum distribution and energy spectrum generated by cluster expansion techniques, here realised in the correlated basis function method, invoking tensor correlations and short-range density-dependent repulsions adequately describes the structure function for 12 C in the region x > 1. The results of structure functions for a number of light-, medium- and heavy-mass nuclei are presented. (author)

Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center

Energy Technology Data Exchange (ETDEWEB)

Kim, Sung-Hou; Shin, Dong Hae; Hou, Jingtong; Chandonia, John-Marc; Das, Debanu; Choi, In-Geol; Kim, Rosalind; Kim, Sung-Hou

2007-09-02

Advances in sequence genomics have resulted in an accumulation of a huge number of protein sequences derived from genome sequences. However, the functions of a large portion of them cannot be inferred based on the current methods of sequence homology detection to proteins of known functions. Three-dimensional structure can have an important impact in providing inference of molecular function (physical and chemical function) of a protein of unknown function. Structural genomics centers worldwide have been determining many 3-D structures of the proteins of unknown functions, and possible molecular functions of them have been inferred based on their structures. Combined with bioinformatics and enzymatic assay tools, the successful acceleration of the process of protein structure determination through high throughput pipelines enables the rapid functional annotation of a large fraction of hypothetical proteins. We present a brief summary of the process we used at the Berkeley Structural Genomics Center to infer molecular functions of proteins of unknown function.

A bioinformatics approach to the structure, function, and evolution of the nucleoprotein of the order mononegavirales.

Directory of Open Access Journals (Sweden)

Sean B Cleveland

2011-05-01

Full Text Available The goal of this Bioinformatic study is to investigate sequence conservation in relation to evolutionary function/structure of the nucleoprotein of the order Mononegavirales. In the combined analysis of 63 representative nucleoprotein (N sequences from four viral families (Bornaviridae, Filoviridae, Rhabdoviridae, and Paramyxoviridae we predict the regions of protein disorder, intra-residue contact and co-evolving residues. Correlations between location and conservation of predicted regions illustrate a strong division between families while high- lighting conservation within individual families. These results suggest the conserved regions among the nucleoproteins, specifically within Rhabdoviridae and Paramyxoviradae, but also generally among all members of the order, reflect an evolutionary advantage in maintaining these sites for the viral nucleoprotein as part of the transcription/replication machinery. Results indicate conservation for disorder in the C-terminus region of the representative proteins that is important for interacting with the phosphoprotein and the large subunit polymerase during transcription and replication. Additionally, the C-terminus region of the protein preceding the disordered region, is predicted to be important for interacting with the encapsidated genome. Portions of the N-terminus are responsible for N∶N stability and interactions identified by the presence or lack of co-evolving intra-protein contact predictions. The validation of these prediction results by current structural information illustrates the benefits of the Disorder, Intra-residue contact and Compensatory mutation Correlator (DisICC pipeline as a method for quickly characterizing proteins and providing the most likely residues and regions necessary to target for disruption in viruses that have little structural information available.

Functional materials discovery using energy-structure-function maps.

Science.gov (United States)

Pulido, Angeles; Chen, Linjiang; Kaczorowski, Tomasz; Holden, Daniel; Little, Marc A; Chong, Samantha Y; Slater, Benjamin J; McMahon, David P; Bonillo, Baltasar; Stackhouse, Chloe J; Stephenson, Andrew; Kane, Christopher M; Clowes, Rob; Hasell, Tom; Cooper, Andrew I; Day, Graeme M

2017-03-30

Molecular crystals cannot be designed in the same manner as macroscopic objects, because they do not assemble according to simple, intuitive rules. Their structures result from the balance of many weak interactions, rather than from the strong and predictable bonding patterns found in metal-organic frameworks and covalent organic frameworks. Hence, design strategies that assume a topology or other structural blueprint will often fail. Here we combine computational crystal structure prediction and property prediction to build energy-structure-function maps that describe the possible structures and properties that are available to a candidate molecule. Using these maps, we identify a highly porous solid, which has the lowest density reported for a molecular crystal so far. Both the structure of the crystal and its physical properties, such as methane storage capacity and guest-molecule selectivity, are predicted using the molecular structure as the only input. More generally, energy-structure-function maps could be used to guide the experimental discovery of materials with any target function that can be calculated from predicted crystal structures, such as electronic structure or mechanical properties.

Amoral, im/moral and dis/loyal: Children's moral status in child welfare.

Science.gov (United States)

Knezevic, Zlatana

2017-11-01

This article is a discursive examination of children's status as knowledgeable moral agents within the Swedish child welfare system and in the widely used assessment framework BBIC. Departing from Fricker's concept of epistemic injustice, three discursive positions of children's moral status are identified: amoral, im/moral and dis/loyal. The findings show the undoubtedly moral child as largely missing and children's agency as diminished, deviant or rendered ambiguous. Epistemic injustice applies particularly to disadvantaged children with difficult experiences who run the risk of being othered, or positioned as reproducing or accommodating to the very same social problems they may be victimised by.

Structure function monitor

Science.gov (United States)

McGraw, John T [Placitas, NM; Zimmer, Peter C [Albuquerque, NM; Ackermann, Mark R [Albuquerque, NM

2012-01-24

Methods and apparatus for a structure function monitor provide for generation of parameters characterizing a refractive medium. In an embodiment, a structure function monitor acquires images of a pupil plane and an image plane and, from these images, retrieves the phase over an aperture, unwraps the retrieved phase, and analyzes the unwrapped retrieved phase. In an embodiment, analysis yields atmospheric parameters measured at spatial scales from zero to the diameter of a telescope used to collect light from a source.

Measurement of the proton structure function F{sub L}(x,Q{sup 2}) with the H1 detector at HERA

Energy Technology Data Exchange (ETDEWEB)

Piec, Sebastian

2010-12-15

A measurement of the inclusive cross section for the deep-inelastic scattering of positrons on protons at low four-momentum transfer squared Q{sup 2} is presented. The measurement is used for the extraction of the longitudinal proton structure function F{sub L}. The analysis is based on data collected by the H1 experiment during special, low energy runs in the year 2007. The direct technique of the F{sub L} determination based on the extraction of the reduced DIS cross sections for three different centre-of-mass energies is used. For the purpose of the analysis a dedicated electron finder has been developed and integrated with the standard H1 reconstruction software H1REC. The algorithm employs information from two independent tracking detectors the Backward Silicon Tracker and the Central Jet Chamber. The performance of the finder is studied. The thesis presents the cross section and the F{sub L} measurements in the range of 2.5 GeV{sup 2}{<=}Q{sup 2}{<=}25 GeV{sup 2}. (orig.)

DisArticle: a web server for SVM-based discrimination of articles on traditional medicine.

Science.gov (United States)

Kim, Sang-Kyun; Nam, SeJin; Kim, SangHyun

2017-01-28

Much research has been done in Northeast Asia to show the efficacy of traditional medicine. While MEDLINE contains many biomedical articles including those on traditional medicine, it does not categorize those articles by specific research area. The aim of this study was to provide a method that searches for articles only on traditional medicine in Northeast Asia, including traditional Chinese medicine, from among the articles in MEDLINE. This research established an SVM-based classifier model to identify articles on traditional medicine. The TAK + HM classifier, trained with the features of title, abstract, keywords, herbal data, and MeSH, has a precision of 0.954 and a recall of 0.902. In particular, the feature of herbal data significantly increased the performance of the classifier. By using the TAK + HM classifier, a total of about 108,000 articles were discriminated as articles on traditional medicine from among all articles in MEDLINE. We also built a web server called DisArticle ( http://informatics.kiom.re.kr/disarticle ), in which users can search for the articles and obtain statistical data. Because much evidence-based research on traditional medicine has been published in recent years, it has become necessary to search for articles on traditional medicine exclusively in literature databases. DisArticle can help users to search for and analyze the research trends in traditional medicine.

SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization.

Science.gov (United States)

Kenyon, Julia C; Tanner, Sian J; Legiewicz, Michal; Phillip, Pretty S; Rizvi, Tahir A; Le Grice, Stuart F J; Lever, Andrew M L

2011-08-01

Feline immunodeficiency virus (FIV) infects many species of cat, and is related to HIV, causing a similar pathology. High-throughput selective 2' hydroxyl acylation analysed by primer extension (SHAPE), a technique that allows structural interrogation at each nucleotide, was used to map the secondary structure of the FIV packaging signal RNA. Previous studies of this RNA showed four conserved stem-loops, extensive long-range interactions (LRIs) and a small, palindromic stem-loop (SL5) within the gag open reading frame (ORF) that may act as a dimerization initiation site (DIS), enabling the virus to package two copies of its genome. Our analyses of wild-type (wt) and mutant RNAs suggest that although the four conserved stem-loops are static structures, the 5' and 3' regions previously shown to form LRI also adopt an alternative, yet similarly conserved conformation, in which the putative DIS is occluded, and which may thus favour translational and splicing functions over encapsidation. SHAPE and in vitro dimerization assays were used to examine SL5 mutants. Dimerization contacts appear to be made between palindromic loop sequences in SL5. As this stem-loop is located within the gag ORF, recognition of a dimeric RNA provides a possible mechanism for the specific packaging of genomic over spliced viral RNAs.

Combination of the inclusive DIS e"±p cross sections from HERA, QCD and EW analyses and the need for low-Q"2 higher-twist corrections

International Nuclear Information System (INIS)

Myronenko, Volodymyr

2017-01-01

A combination of the inclusive lepton-proton cross sections from the ZEUS and H1 experiments is presented. The data are combined taking into account correlations of the systematic uncertainties of the measurements. The resulting combined inclusive neutral- and charged-current e"±p cross sections derived from ∝1 fb"-"1 of data, cover the kinematic region of 0.045≤Q"2≤50000 GeV"2 and 6.10"-"7≤x_B_j≤0.65. The combined data is an unique legacy of the HERA collider and the core of any parton-density-function extraction. The parton distribution functions are essential ingredients in the evaluation of QCD predictions for the high-energy processes, studied at modern proton colliders. The methodology of HERAPDF fits is used as an ansatz for the global QCD fit. The charm- and beauty-quark mass parameters in the analyses at next-next-to-leading order were found to be M"o"p"t_c=1.43 GeV and M"o"p"t_b=4.5 GeV, respectively. HERAPDF2.0 sets give reasonable DIS data description. The effect of higher-twist corrections on the DIS structure functions was studied. The twist-4 corrections were introduced to the F_2 and F_L structure functions. A minimal improvement in the data description was found for the F_2 correction. The introduction of a higher-twist correction to the F_L structure function improved the QCD fit quality by up to Δχ"2=47, predominantly affecting the low-x_B_j and low-Q"2 regions. The twist-4 correction causes an unphysical rise of the predicted F_L in the low x_B_j region. The results indicate a need for further investigations. The electroweak parameters and PDFs are determined simultaneously using the HERA inclusive cross sections together with information on the lepton beam polarisation. The vector- and axial-vector couplings of the u- and d-type quarks to the Z"0 boson are determined simultaneously. The u-type quark couplings were found to be a_u=0.532"+"0"."1"0"7_-_0_._0_6_3, v_u.144"+"0"."0"6"6_-_0_._0_5_8, which are the most precise measurements

VennDIS: a JavaFX-based Venn and Euler diagram software to generate publication quality figures.

Science.gov (United States)

Ignatchenko, Vladimir; Ignatchenko, Alexandr; Sinha, Ankit; Boutros, Paul C; Kislinger, Thomas

2015-04-01

Venn diagrams are graphical representations of the relationships among multiple sets of objects and are often used to illustrate similarities and differences among genomic and proteomic datasets. All currently existing tools for producing Venn diagrams evince one of two traits; they require expertise in specific statistical software packages (such as R), or lack the flexibility required to produce publication-quality figures. We describe a simple tool that addresses both shortcomings, Venn Diagram Interactive Software (VennDIS), a JavaFX-based solution for producing highly customizable, publication-quality Venn, and Euler diagrams of up to five sets. The strengths of VennDIS are its simple graphical user interface and its large array of customization options, including the ability to modify attributes such as font, style and position of the labels, background color, size of the circle/ellipse, and outline color. It is platform independent and provides real-time visualization of figure modifications. The created figures can be saved as XML files for future modification or exported as high-resolution images for direct use in publications. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Capacitación a distancia (CapDis y el uso de plataformas virtuales. La experiencia del Centro Centroamericano de Población

Directory of Open Access Journals (Sweden)

Marín, Carmen

2006-01-01

Full Text Available Introducción.- Las NTIC abren nuevas posibilidades para la educación. Aprender en entornos mediados por NTIC supone flexibilidad en espacio y tiempo e interacción entre los participantes para el aprendizaje significativo. Las universidades al implementar ofertas formativas de carácter virtual deben reconsiderar sus modelos de enseñanza y de aprendizaje e iniciar procesos de análisis y revisión de las experiencias realizadas. El presente artículo pretende sistematizar el accionar del proyecto CapDis del Centro Centroamericano de Población (CCP al introducir el uso de las nuevas tecnologías de información y comunicación en la educación superior en la Universidad de Costa Rica (UCR.Métodos.- Se basa en un estudio de caso que aplica el método cualitativo mediante revisión documental y registro de eventos.Resultados.- En CapDis se identifican las siguientes etapas: I. Páginas web vinculadas; II. Páginas web integradas y III. Learning Management System. En las primeras dos etapas se dio soporte a los profesores y se asumió la mayor parte de las tareas de implementación y mantenimiento. Cuando se incorporó moodle.org, se facilitó la participación de más profesores quienes asumieron un rol más activo en CapDis. A marzo 2005, la comparación de metas y resultados evidencia que fueron superados los resultados esperados.Discusión.- El presente artículo se constituye en un insumo útil en la identificación de las dificultades, alcances y limitaciones de la incorporación de las NTIC en la docencia en educación superior en la Universidad de Costa Rica. Las etapas identificadas en CapDis han sido descritas en términos del alcance de los recursos NTIC puestos en práctica. Más allá de los aspectos tecnológicos y administrativos descritos, el proceso seguido por CapDis logró enriquecer la interacción de una modalidad asíncrona (diferida a una síncrona (inmediata, lo que abre la oportunidad de contribuir a una mejor comprensi

Factors Associated with Parent-Child (Dis)Agreement on Child Behavior and Parenting Problems in Chinese Immigrant Families

Science.gov (United States)

Fung, Joey J.; Lau, Anna S.

2010-01-01

We examined familial and cultural factors predicting parent-child (dis)agreement on child behavior and parenting problems. Immigrant Chinese parents (89.7% mothers; M age = 44.24 years) and their children (62 boys; 57.9%) between the ages of 9 and 17 years (M = 11.9 years, SD = 2.9) completed measures of parent punitive behavior and child…

The MentDis_ICF65+study protocol: prevalence, 1-year incidence and symptom severity of mental disorders in the elderly and their relationship to impairment, functioning (ICF) and service utilisation

OpenAIRE

Andreas, Sylke; Haerter, Martin; Volkert, Jana; Hausberg, Maria; Sehner, Susanne; Wegscheider, Karl; Rabung, Sven; Ausin, Berta; Canuto, Alessandra; Da Ronch, Chiara; Grassi, Luigi; Hershkovitz, Yael; Lelliott, Paul; Munoz, Manuel; Quirk, Alan

2013-01-01

Background The EU currently lacks reliable data on the prevalence and incidence of mental disorders in older people. Despite the availability of several national and international epidemiological studies, the size and burden of mental disorders in the elderly remain unclear due to various reasons. Therefore, the aims of the MentDis_ICF65+ study are (1) to adapt existing assessment instruments, and (2) to collect data on the prevalence, the incidence, and the natural course and prognosis of me...

Functional Insights from Structural Genomics

Energy Technology Data Exchange (ETDEWEB)

Forouhar,F.; Kuzin, A.; Seetharaman, J.; Lee, I.; Zhou, W.; Abashidze, M.; Chen, Y.; Montelione, G.; Tong, L.; et al

2007-01-01

Structural genomics efforts have produced structural information, either directly or by modeling, for thousands of proteins over the past few years. While many of these proteins have known functions, a large percentage of them have not been characterized at the functional level. The structural information has provided valuable functional insights on some of these proteins, through careful structural analyses, serendipity, and structure-guided functional screening. Some of the success stories based on structures solved at the Northeast Structural Genomics Consortium (NESG) are reported here. These include a novel methyl salicylate esterase with important role in plant innate immunity, a novel RNA methyltransferase (H. influenzae yggJ (HI0303)), a novel spermidine/spermine N-acetyltransferase (B. subtilis PaiA), a novel methyltransferase or AdoMet binding protein (A. fulgidus AF{_}0241), an ATP:cob(I)alamin adenosyltransferase (B. subtilis YvqK), a novel carboxysome pore (E. coli EutN), a proline racemase homolog with a disrupted active site (B. melitensis BME11586), an FMN-dependent enzyme (S. pneumoniae SP{_}1951), and a 12-stranded {beta}-barrel with a novel fold (V. parahaemolyticus VPA1032).

Spin dependent photon structure functions

International Nuclear Information System (INIS)

Manohar, A.V.; Massachusetts Inst. of Tech., Cambridge

1989-01-01

Spin dependent structure functions of the photon are studied using the operator product expansion. There are new twist-two photon and gluon operators which contribute. The structure functions g 1 and F 3 are calculable in QCD, but differ from their free quark values. The corrections to F 3 are suppressed by 1/log Q 2 . The calculation is an extension of the analysis of Witten for the spin averaged structure functions F 1 and F 2 . (orig.)

Calculations of nucleon structure functions

International Nuclear Information System (INIS)

Signal, A.I.

1990-01-01

We present a method of calculating deep inelastic nucleon structure functions using bag model wavefunctions. Our method uses the Peierls - Yoccoz projection to form translation invariant bag states. We obtain the correct support for the structure functions and satisfy the positivity requirements for quark and anti-quark distribution functions. (orig.)

Nucleon structure functions

International Nuclear Information System (INIS)

Virchaux, M.

1992-11-01

The present status of experimental measurements of the nucleon structure functions is reviewed. The results from nearly all deep inelastic experiments are in good mutual agreement. Principles of the analysis of these structure function data in the framework of QCD are described. The specific features of the perturbative QCD predictions are observed in the data. This provides quantitative tests of the validity of QCD as well as determinations of the various parton distributions in the nucleon and some of the most precise measurements of the strong coupling constant αs. The future of this field of experimental physics is sketched

Chromatin Structure and Function

CERN Document Server

Wolffe, Alan P

1999-01-01

The Third Edition of Chromatin: Structure and Function brings the reader up-to-date with the remarkable progress in chromatin research over the past three years. It has been extensively rewritten to cover new material on chromatin remodeling, histone modification, nuclear compartmentalization, DNA methylation, and transcriptional co-activators and co-repressors. The book is written in a clear and concise fashion, with 60 new illustrations. Chromatin: Structure and Function provides the reader with a concise and coherent account of the nature, structure, and assembly of chromatin and its active

Studies of the nucleon structure in back-to-back SIDIS

International Nuclear Information System (INIS)

Avakian, H.

2016-01-01

The Deep Inelastic Scattering (DIS) proved to be a great tool in testing of the theory of strong interactions, which was a major focus in last decades. Semi-Inclusive DIS (SIDIS), with detection of an additional hadron allowed first studies of 3D structure of the nucleon, moving the main focus from testing the QCD to understanding of strong interactions and quark gluon dynamics to address a number of puzzles accumulated in recent years. Detection of two hadrons in SIDIS, which is even more complicated, provides access to details of quark gluon interactions inaccessible in single-hadron SIDIS, providing a new avenue to study the complex nucleon structure. Large acceptance of the Electron Ion Collider, allowing detection of two hadrons, produced back-to-back in the current and target fragmentation regions, combined with clear separation of two regions, would provide a unique possibility to study the nucleon structure in target fragmentation region, and correlations of target and current fragmentation regions. (authors)

Studies of the nucleon structure in back-to-back SIDIS

Energy Technology Data Exchange (ETDEWEB)

Avakian, Harut [Thomas Jefferson National Accelerator Facility (TJNAF), Newport News, VA (United States)

2016-03-01

The Deep Inelastic Scattering (DIS) proved to be a great tool in testing of the theory of strong interactions, which was a major focus in last decades. Semi-Inclusive DIS (SIDIS), with detection of an additional hadron allowed first studies of 3D structure of the nucleon, moving the main focus from testing the QCD to understanding of strong interactions and quark gluon dynamics to address a number of puzzles accumulated in recent years. Detection of two hadrons in SIDIS, which is even more complicated, provides access to details of quark gluon interactions inaccessible in single-hadron SIDIS, providing a new avenue to study the complex nucleon structure. Large acceptance of the Electron Ion Collider, allowing detection of two hadrons, produced back-to-back in the current and target fragmentation regions, combined with clear separation of two regions, would provide a unique possibility to study the nucleon structure in target fragmentation region, and correlations of target and current fragmentation regions.

Higher order constraints on the Higgs production rate from fixed-target DIS data

International Nuclear Information System (INIS)

Alekhin, S.; Bluemlein, J.; Moch, S.

2011-01-01

The constraints of fixed-target DIS data in fits of parton distributions including QCD corrections to next-to-next-to leading order are studied. We point out a potential problem in the analysis of the NMC data which can lead to inconsistencies in the extracted value for α s (M Z ) and the gluon distribution at higher orders in QCD. The implications for predictions of rates for Standard Model Higgs boson production at hadron colliders are investigated. We conclude that the current range of excluded Higgs boson masses at the Tevatron appears to be much too large. (orig.)

Nucleon Spin Structure: Longitudinal and Transverse

International Nuclear Information System (INIS)

Chen, Jian-Ping

2011-01-01

Inclusive Deep-Inelastic Scattering (DIS) experiments have provided us with the most extensive information on the unpolarized and longitudinal polarized parton (quark and gluon) distributions in the nucleon. It has becoming clear that transverse spin and transverse momentum dependent distributions (TMDs) study are crucial for a more complete understanding of the nucleon structure and the dynamics of the strong interaction. The transverse spin structure and the TMDs are the subject of increasingly intense theoretical and experimental study recently. With a high luminosity electron beam facility, JLab has played a major role in the worldwide effort to study both the longitudinal and transverse spin structure. Highlights of recent results will be presented. With 12-GeV energy upgrade, JLab will provide the most precise measurements in the valence quark region to close a chapter in longitudinal spin study. JLab will also perform a multi-dimensional mapping of the transverse spin structure and TMDs in the valence quark region through Semi-Inclusive DIS (SIDIS) experiments, providing a 3-d partonic picture of the nucleon in momentum space and extracting the u and d quark tensor charges of the nucleon. The precision mapping of TMDs will also allow a detailed study of the quark orbital motion and its dynamics.

Measure Fields for Function Approximation

Science.gov (United States)

1993-06-01

intelligence research is provided by ONR contract N00014-91-J-4038 J.L. Marroquin was supported in part by a grant from the Consejo Nacional de Ciencia y ... Tecnologia , Mexico. _ 93-28011 9-3 -- -" nnuM IInu 4 0 0 0 1 Introduction imating functions are always discontinuous, and the dis- continuities are...capacity and generalization capabili- is present panel (a) of figure 1 shows a function z(z, y ) ties. that is equal to a tilted plane inside an L

Medium effects in DIS from polarized nuclear targets

Energy Technology Data Exchange (ETDEWEB)

Fanchiotti, Huner; Garcia Canal, Carlos A.; Tarutina, Tatiana [Universidad Nacional de La Plata, Departamento de Fisica, C.C. 67, La Plata (Argentina); Universidad Nacional de La Plata, IFLP(CONICET), C.C. 67, La Plata (Argentina); Vento, Vicente [Universidad de Valencia, Consejo Superior de Investigaciones Cientificas, Departamento de Fisica Teorica and Instituto de Fisica Corpuscular, Burjassot (Valencia) (Spain)

2014-07-15

The behavior of the nucleon structure functions in lepton nuclei deep inelastic scattering, both polarized and unpolarized, due to nuclear structure effects is reanalyzed. The study is performed in two schemes: an x-rescaling approach, and one in which there is an increase of sea quark components in the in-medium nucleon, related to the low-energy N-N interaction. In view of a recent interesting experimental proposal to study the behavior of the proton spin structure functions in nuclei we proceed to compare these approaches in an effort to enlighten the possible phenomenological interest of such difficult experiment. (orig.)

Combination of the inclusive DIS e{sup ±}p cross sections from HERA, QCD and EW analyses and the need for low-Q{sup 2} higher-twist corrections

Energy Technology Data Exchange (ETDEWEB)

Myronenko, Volodymyr

2017-01-15

A combination of the inclusive lepton-proton cross sections from the ZEUS and H1 experiments is presented. The data are combined taking into account correlations of the systematic uncertainties of the measurements. The resulting combined inclusive neutral- and charged-current e{sup ±}p cross sections derived from ∝1 fb{sup -1} of data, cover the kinematic region of 0.045≤Q{sup 2}≤50000 GeV{sup 2} and 6.10{sup -7}≤x{sub Bj}≤0.65. The combined data is an unique legacy of the HERA collider and the core of any parton-density-function extraction. The parton distribution functions are essential ingredients in the evaluation of QCD predictions for the high-energy processes, studied at modern proton colliders. The methodology of HERAPDF fits is used as an ansatz for the global QCD fit. The charm- and beauty-quark mass parameters in the analyses at next-next-to-leading order were found to be M{sup opt}{sub c}=1.43 GeV and M{sup opt}{sub b}=4.5 GeV, respectively. HERAPDF2.0 sets give reasonable DIS data description. The effect of higher-twist corrections on the DIS structure functions was studied. The twist-4 corrections were introduced to the F{sub 2} and F{sub L} structure functions. A minimal improvement in the data description was found for the F{sub 2} correction. The introduction of a higher-twist correction to the F{sub L} structure function improved the QCD fit quality by up to Δχ{sup 2}=47, predominantly affecting the low-x{sub Bj} and low-Q{sup 2} regions. The twist-4 correction causes an unphysical rise of the predicted F{sub L} in the low x{sub Bj} region. The results indicate a need for further investigations. The electroweak parameters and PDFs are determined simultaneously using the HERA inclusive cross sections together with information on the lepton beam polarisation. The vector- and axial-vector couplings of the u- and d-type quarks to the Z{sup 0} boson are determined simultaneously. The u-type quark couplings were found to be a{sub u}=0

Purely Functional Structured Programming

OpenAIRE

Obua, Steven

2010-01-01

The idea of functional programming has played a big role in shaping today's landscape of mainstream programming languages. Another concept that dominates the current programming style is Dijkstra's structured programming. Both concepts have been successfully married, for example in the programming language Scala. This paper proposes how the same can be achieved for structured programming and PURELY functional programming via the notion of LINEAR SCOPE. One advantage of this proposal is that m...

Proton and neutron structure functions

International Nuclear Information System (INIS)

Rock, S.

1991-01-01

New result on charged lepton scattering from hydrogen and deuterium targets by the BCDMS, NMC and SLAC collaborations have greatly increased our knowledge of the structure functions of protons and neutrons. The disagreement between the high energy muon scattering cross sections obtained by the EMC and BCDMS collaborations have been almost completely resolved by comparison with a global analysis of old and new SLAC data and a reanalysis of EMC data. We now have a consistent set of structure functions which covers an approximate range 1 ≤ Q 2 ≤ 200 (GeV/c) 2 and 0.07 ≤ x ≤ 0.7. The ratio of neutron to proton structure functions decreases with increasing Q 2 for values of x ≥ 0.1. The difference between proton and neutron structure functions approaches zero as x decreases, consistent with the expected √x behavior. (orig.)

The human core exosome interacts with differentially localized processive RNases

DEFF Research Database (Denmark)

Tomecki, Rafal; Kristiansen, Maiken Søndergaard; Lykke-Andersen, Søren

2010-01-01

The eukaryotic RNA exosome is a ribonucleolytic complex involved in RNA processing and turnover. It consists of a nine-subunit catalytically inert core that serves a structural function and participates in substrate recognition. Best defined in Saccharomyces cerevisiae, enzymatic activity comes...... from the associated subunits Dis3p (Rrp44p) and Rrp6p. The former is a nuclear and cytoplasmic RNase II/R-like enzyme, which possesses both processive exo- and endonuclease activities, whereas the latter is a distributive RNase D-like nuclear exonuclease. Although the exosome core is highly conserved......, identity and arrangements of its catalytic subunits in different vertebrates remain elusive. Here, we demonstrate the association of two different Dis3p homologs--hDIS3 and hDIS3L--with the human exosome core. Interestingly, these factors display markedly different intracellular localizations: hDIS3...

The Bjorken sum rule with Monte Carlo and Neural Network techniques

International Nuclear Information System (INIS)

Debbio, L. Del; Guffanti, A.; Piccione, A.

2009-01-01

Determinations of structure functions and parton distribution functions have been recently obtained using Monte Carlo methods and neural networks as universal, unbiased interpolants for the unknown functional dependence. In this work the same methods are applied to obtain a parametrization of polarized Deep Inelastic Scattering (DIS) structure functions. The Monte Carlo approach provides a bias-free determination of the probability measure in the space of structure functions, while retaining all the information on experimental errors and correlations. In particular the error on the data is propagated into an error on the structure functions that has a clear statistical meaning. We present the application of this method to the parametrization from polarized DIS data of the photon asymmetries A 1 p and A 1 d from which we determine the structure functions g 1 p (x,Q 2 ) and g 1 d (x,Q 2 ), and discuss the possibility to extract physical parameters from these parametrizations. This work can be used as a starting point for the determination of polarized parton distributions.

Regge behaviour of structure functions and evolution of gluon structure function upto next-to-leading order at low-x

International Nuclear Information System (INIS)

Jamil, U.; Sarma, J.K.

2011-01-01

Evolution of gluon structure function from Dokshitzer-Gribov-Lipatov-Altarelli-Parisi (DGLAP) evolution equations upto next-to-leading order at low-x is presented assuming the Regge behaviour of structure functions. We compare our results of gluon structure function with GRV 98 global parameterization and show the compatibility of Regge behaviour of structure functions with PQCD. (author)

Structure functions from chiral soliton models

International Nuclear Information System (INIS)

Weigel, H.; Reinhardt, H.; Gamberg, L.

1997-01-01

We study nucleon structure functions within the bosonized Nambu-Jona-Lasinio (NJL) model where the nucleon emerges as a chiral soliton. We discuss the model predictions on the Gottfried sum rule for electron-nucleon scattering. A comparison with a low-scale parametrization shows that the model reproduces the gross features of the empirical structure functions. We also compute the leading twist contributions of the polarized structure functions g 1 and g 2 in this model. We compare the model predictions on these structure functions with data from the E143 experiment by GLAP evolving them from the scale characteristic for the NJL-model to the scale of the data

Amoral, im/moral and dis/loyal: Children’s moral status in child welfare

Science.gov (United States)

Knezevic, Zlatana

2017-01-01

This article is a discursive examination of children’s status as knowledgeable moral agents within the Swedish child welfare system and in the widely used assessment framework BBIC. Departing from Fricker’s concept of epistemic injustice, three discursive positions of children’s moral status are identified: amoral, im/moral and dis/loyal. The findings show the undoubtedly moral child as largely missing and children’s agency as diminished, deviant or rendered ambiguous. Epistemic injustice applies particularly to disadvantaged children with difficult experiences who run the risk of being othered, or positioned as reproducing or accommodating to the very same social problems they may be victimised by. PMID:29187776

Final-state interaction in semi-inclusive DIS off nuclei

CERN Document Server

Ciofi degli Atti, C

2003-01-01

The Final-State Interaction (FSI) in Deep-Inelastic Scattering (DIS) of leptons off a nucleus A, due to the propagation of the struck nucleon debris and its hadronization in the nuclear environment is considered. The effective cross-section of such a partonic system with the nucleons of the medium and its time dependence are estimated, for different values of the Bjorken scaling variable, on the basis of a model which takes into account both the production of hadrons due to the breaking of the color string, which is formed after a quark is knocked out off a bound nucleon, as well as the production of hadrons originating from gluon radiation. It is shown that the interaction, the evolution and the hadronization of the partonic system in the nuclear environment can be thoroughly investigated by a new type of semi-inclusive process, denoted A(e,e'(A-1))X, in which the scattered lepton is detected in coincidence with a heavy nuclear fragment, namely a nucleus (A-1) in low energy and momentum states. As a matter o...

Higher order and heavy quark mass effects in the determination of parton distribution functions

Energy Technology Data Exchange (ETDEWEB)

Bertone, Valerio

2013-07-01

The present thesis was devoted to the study of the inclusion of higher-order corrections and heavy quark mass effects in a PDF determination. This has been carried out in the NNPDF framework resulting originally in the NNPDF2.1 sets, which were at a later stage supplemented by the first LHC data leading to the most recent NNPDF2.3 sets. In Chapter 1 the concept of Parton Distribution Function (PDF) was introduced. We have shown how the analytical computation of the Deep-Inelastic-Scattering (DIS) process at order α{sub s} in QCD leads to initial-stale collinear divergences which, using the factorization theorem, can be reabsorbed into the PDFs. The energy dependence of PDFs is fully determined and the task is then reduced to the determination of the x (Bjorken variable) dependence. In Chapter 2 a detailed discussion of the factorization schemes presently available to include heavy quark mass effects into DIS structure functions has been given. It emerged that there are two possible basic approaches to the calculation of the DIS structure functions. In the first approach, the so-called Fixed-Flavour-Number Scheme (FFNS), the calculation is performed retaining the quark mass of the heavy flavours which provide a ''natural'' regulator for the infrared divergences. In the second approach, called Zero-Mass Variable-Flavour-Number Scheme (ZM-VFNS), the heavy quark masses are instead set to zero and this gives rise to the usual final-state collinear divergences that are absorbed into the PDFs. In addition, in the ZM-VFNS, the number of active flavours is assumed to increase by one unity as the energy of the process crosses the energy threshold of a given heavy quark. In order to obtain a factorization scheme that is accurate both at large and low energies, several prescriptions that interpolate between FFNS at low energy and ZM-VFNS at large energy have been proposed and implemented in as many PDF fits. In Chapter 2 they have been described showing how they behave for

Higher order and heavy quark mass effects in the determination of parton distribution functions

Energy Technology Data Exchange (ETDEWEB)

Bertone, Valerio

2013-07-01

The present thesis was devoted to the study of the inclusion of higher-order corrections and heavy quark mass effects in a PDF determination. This has been carried out in the NNPDF framework resulting originally in the NNPDF2.1 sets, which were at a later stage supplemented by the first LHC data leading to the most recent NNPDF2.3 sets. In Chapter 1 the concept of Parton Distribution Function (PDF) was introduced. We have shown how the analytical computation of the Deep-Inelastic-Scattering (DIS) process at order α{sub s} in QCD leads to initial-stale collinear divergences which, using the factorization theorem, can be reabsorbed into the PDFs. The energy dependence of PDFs is fully determined and the task is then reduced to the determination of the x (Bjorken variable) dependence. In Chapter 2 a detailed discussion of the factorization schemes presently available to include heavy quark mass effects into DIS structure functions has been given. It emerged that there are two possible basic approaches to the calculation of the DIS structure functions. In the first approach, the so-called Fixed-Flavour-Number Scheme (FFNS), the calculation is performed retaining the quark mass of the heavy flavours which provide a ''natural'' regulator for the infrared divergences. In the second approach, called Zero-Mass Variable-Flavour-Number Scheme (ZM-VFNS), the heavy quark masses are instead set to zero and this gives rise to the usual final-state collinear divergences that are absorbed into the PDFs. In addition, in the ZM-VFNS, the number of active flavours is assumed to increase by one unity as the energy of the process crosses the energy threshold of a given heavy quark. In order to obtain a factorization scheme that is accurate both at large and low energies, several prescriptions that interpolate between FFNS at low energy and ZM-VFNS at large energy have been proposed and implemented in as many PDF fits. In Chapter 2 they have been described showing

Higher order and heavy quark mass effects in the determination of parton distribution functions

International Nuclear Information System (INIS)

Bertone, Valerio

2013-01-01

The present thesis was devoted to the study of the inclusion of higher-order corrections and heavy quark mass effects in a PDF determination. This has been carried out in the NNPDF framework resulting originally in the NNPDF2.1 sets, which were at a later stage supplemented by the first LHC data leading to the most recent NNPDF2.3 sets. In Chapter 1 the concept of Parton Distribution Function (PDF) was introduced. We have shown how the analytical computation of the Deep-Inelastic-Scattering (DIS) process at order α s in QCD leads to initial-stale collinear divergences which, using the factorization theorem, can be reabsorbed into the PDFs. The energy dependence of PDFs is fully determined and the task is then reduced to the determination of the x (Bjorken variable) dependence. In Chapter 2 a detailed discussion of the factorization schemes presently available to include heavy quark mass effects into DIS structure functions has been given. It emerged that there are two possible basic approaches to the calculation of the DIS structure functions. In the first approach, the so-called Fixed-Flavour-Number Scheme (FFNS), the calculation is performed retaining the quark mass of the heavy flavours which provide a ''natural'' regulator for the infrared divergences. In the second approach, called Zero-Mass Variable-Flavour-Number Scheme (ZM-VFNS), the heavy quark masses are instead set to zero and this gives rise to the usual final-state collinear divergences that are absorbed into the PDFs. In addition, in the ZM-VFNS, the number of active flavours is assumed to increase by one unity as the energy of the process crosses the energy threshold of a given heavy quark. In order to obtain a factorization scheme that is accurate both at large and low energies, several prescriptions that interpolate between FFNS at low energy and ZM-VFNS at large energy have been proposed and implemented in as many PDF fits. In Chapter 2 they have been described showing how

A Mapping Between Structural and Functional Brain Networks.

Science.gov (United States)

Meier, Jil; Tewarie, Prejaas; Hillebrand, Arjan; Douw, Linda; van Dijk, Bob W; Stufflebeam, Steven M; Van Mieghem, Piet

2016-05-01

The relationship between structural and functional brain networks is still highly debated. Most previous studies have used a single functional imaging modality to analyze this relationship. In this work, we use multimodal data, from functional MRI, magnetoencephalography, and diffusion tensor imaging, and assume that there exists a mapping between the connectivity matrices of the resting-state functional and structural networks. We investigate this mapping employing group averaged as well as individual data. We indeed find a significantly high goodness of fit level for this structure-function mapping. Our analysis suggests that a functional connection is shaped by all walks up to the diameter in the structural network in both modality cases. When analyzing the inverse mapping, from function to structure, longer walks in the functional network also seem to possess minor influence on the structural connection strengths. Even though similar overall properties for the structure-function mapping are found for different functional modalities, our results indicate that the structure-function relationship is modality dependent.

Proton structure functions at small x

International Nuclear Information System (INIS)

Hentschinski, Martin

2015-01-01

Proton structure functions are measured in electron-proton collision through inelastic scattering of virtual photons with virtuality Q on protons; x denotes the momentum fraction carried by the struck parton. Proton structure functions are currently described with excellent accuracy in terms of scale dependent parton distribution functions, defined in terms of collinear factorization and DGLAP evolution in Q. With decreasing x however, parton densities increase and are ultimately expected to saturate. In this regime DGLAP evolution will finally break down and non-linear evolution equations w.r.t x are expected to take over. In the first part of the talk we present recent result on an implementation of physical DGLAP evolution. Unlike the conventional description in terms of parton distribution functions, the former describes directly the Q dependence of the measured structure functions. It is therefore physical insensitive to factorization scheme and scale ambiguities. It therefore provides a more stringent test of DGLAP evolution and eases the manifestation of (non-linear) small x effects. It however requires a precise measurement of both structure functions F 2 and F L , which will be only possible at future facilities, such as an Electron Ion Collider. In the second part we present a recent analysis of the small x region of the combined HERA data on the structure function F 2 . We demonstrate that (linear) next-to-leading order BFKL evolution describes the effective Pomeron intercept, determined from the combined HERA data, once a resummation of collinear enhanced terms is included and the renormalization scale is fixed using the BLM optimal scale setting procedure. We also provide a detailed description of the Q and x dependence of the full structure functions F 2 in the small x region, as measured at HERA. Predictions for the structure function F L are found to be in agreement with the existing HERA data. (paper)

Diquarks and nucleon structure functions

International Nuclear Information System (INIS)

Linkevich, A.D.; Savrin, V.I.; Skachkov, N.B.

1982-01-01

Formulae for structure functions of the deep-inelastic lepton-nucleon scattering are obtained through relativistic wave functions of systems composed of particles with spins 0, 1/2 and 1, 1/2. These wave functions are solutions of covariant two-particle single-time equations describing the nucleon as a system formed out of a quark and a diquark. Diquark is considered as a boson with the spin 0 and 1. The expressions for the nucleon structure functions are obtained by using the matrix elements of the current operator corresponding to the elastic scattering of the photon on a quark and on a diquark [ru

Study of quark structure functions

International Nuclear Information System (INIS)

Dao, F.T.; Flaminio, E.; Lai, K.; Metcalf, M.; Wang, L.

1977-01-01

The quark structure functions of the proton are determined through a combined analysis of the reactions pN → ll-barX and eN → eX. The valence-quark structure function of the pion is also given by analyzing the πN → μμ-barX data measured by the Branson et al

Hyperbolic functions with configuration theorems and equivalent and equidecomposable figures

CERN Document Server

Shervatov, V G; Skornyakov, L A; Boltyanskii, V G

2007-01-01

This single-volume compilation of three books centers on Hyperbolic Functions, an introduction to the relationship between the hyperbolic sine, cosine, and tangent, and the geometric properties of the hyperbola. The development of the hyperbolic functions, in addition to those of the trigonometric (circular) functions, appears in parallel columns for comparison. A concluding chapter introduces natural logarithms and presents analytic expressions for the hyperbolic functions.The second book, Configuration Theorems, requires only the most elementary background in plane and solid geometry. It dis

Quantum chromodynamics

CERN Document Server

Martinelli, Guido

1994-01-01

1, Hadrons as bound states of quarks and gluons. 2, Quark models, confinement and asymptotic freedom. 3, The parton model; Deep Inelastic Scattering (DIS) process. 4, The parton model and QCD. 5) Phenomenology of the parton model; muon and neutrino DIS, structure functions and parton distributions. 6) W and Z production at Colliders. 7) Weak decays and strong interactions. 8) Heavy flavours effective theories and QCD. 9) Non-perturbative QCD.

Structure functions and correlations in nuclei

International Nuclear Information System (INIS)

Fantoni, S.

1988-01-01

In this paper the results obtained for the static structure function S(k) and the longitudinal structure function S L (k) of 3 H, 3 He and 4 He nuclei and nuclear matter are presented and discussed. The calculations have been performed using realistic wave functions obtained from Faddeev and variational theories. The Monte Carlo method has been used to calculate the structure functions of finite systems, and the FHNC/SOC method for nuclear matter. The results for the 3 He nucleus are in agreement with the recent Saclay data. The results for nuclear matter are compared with the experimental data relative to heavier nuclei, like e.g. 40 Ca

Literary Discussions and Advanced Speaking Functions: Researching the (Dis)Connection

Science.gov (United States)

Donato, Richard; Brooks, Frank B.

2004-01-01

This study investigated the discourse of class discussion in the advanced undergraduate Spanish literature course. Motivating this study was the need for research to determine how discussion in advanced undergraduate literature courses provides discourse opportunities to students to develop advanced language functions, as defined in the ACTFL…

Resonance contribution to electromagnetic structure functions

International Nuclear Information System (INIS)

Bowling, A.L. Jr.

1974-01-01

The part of the pion and proton electromagnetic structure functions due to direct channel resonances in the virtual Compton amplitude is discussed. After a phenomenological discussion, based on the work of Bloom and Gilman, of resonance production in inelastic electroproduction, the single resonance contribution to the pion and proton structure functions is expressed in terms of transition form factors. Froissart-Gribov representations of the Compton amplitude partial waves are presented and are used to specify the spin dependence of the transition form factors. The dependence of the form factors on momentum transfer and resonance mass is assumed on the basis of the behavior of exclusive resonance electroproduction. The single resonance contributions are summed in the Bjorken limit, and the result exhibits Bjorken scaling. Transverse photons are found to dominate in the Bjorken limit, and the threshold behavior of the resonant part of the structure functions is related to the asymptotic behavior of exclusive form factors at large momentum transfer. The resonant parts of the annihilation structure functions are not in general given by simple analytic continuation in the scaling vari []ble ω' of the electroproduction structure functions. (Diss. Abstr. Int., B)

Phenomenology of the electron structure function

International Nuclear Information System (INIS)

Slominski, W.; Szwed, J.

2001-01-01

The advantages of introducing the electron structure function (ESF) in electron induced processes are demonstrated. Contrary to the photon structure function it is directly measured in such processes. At present energies, a simultaneous analysis of both the electron and the photon structure functions gives an important test of the experimentally applied methods. Estimates of the ESF at LEP momenta are given. At very high momenta contributions from W and Z bosons together with γ-Z interference can be observed. Predictions for the next generation of experiments are given. (orig.)

Novel germanetellones: XYGe=Te (X, Y = H, F, Cl, Br, I and CN) - structures and energetics. Comparison with the first synthetic successes.

Science.gov (United States)

Jaufeerally, Naziah B; Abdallah, Hassan H; Ramasami, Ponnadurai; Schaefer, Henry F

2014-03-14

No stable germanetellone was described until Tbt(Dis)Ge=Te and Tbt(Tip)Ge=Te (Tbt = 2,4,6-tris[bis(trimethylsilyl)methyl]phenyl, Dis = bis(trimethylsilyl)methyl and Tip = 2,4,6-triisopropylphenyl) were reported in 1997. Following these initial experiments, there has arisen considerable interest in Ge[double bond, length as m-dash]Te systems. An obvious question is: why have the simple XYGe=Te (X, Y = H, F, Cl, Br, I and CN) molecules not yet been isolated? In view of the present situation, theoretical information may be of great help for further advances in germanetellone chemistry. A systematic investigation of the XYGe=Te molecules is carried out using the second order Møller-Plesset perturbation theory (MP2) and density functional theory (DFT). The structures and energetics, including ionization potentials (IPad and IPad(ZPVE)), four different forms of neutral-anion separations (EAad, EAad(ZPVE), VEA and VDE) and the singlet-triplet gaps, are reported. The electronegativity (χ) reactivity descriptor for the halogens (F, Cl, Br and I) and the natural charge separations of the Ge=Te moiety are used to assess the interrelated properties of germanetellone and its derivatives. The results are analyzed, discussed and compared with analogous studies of telluroformaldehyde, silanetellone and their derivatives. The thermodynamic viabilities of some of the novel germanetellones have also been evaluated in terms of the bond dissociation enthalpies of Tbt(Dis)Ge=Te and Tbt(Tip)Ge=Te. The simple mono-substituted germanetellones appear to be slightly more thermodynamically favored than Tbt(Dis)Ge=Te and Tbt(Tip)Ge=Te, since the bond dissociation enthalpies of these kinetically stabilized germanetellones are about 28 and 51 kcal mol(-1) lower, respectively.

Structure and Structure-activity Relationship of Functional Organic Molecules

Institute of Scientific and Technical Information of China (English)

2011-01-01

@@ Research theme The group is made up of junior scientists from the State Key Laboratory of Elemento-organic Chemistry, Nankai University.The scientists focus their studis on the structure and structure-activity relationship of functional organic molecules not only because it has been the basis of their research, but also because the functional study of organic compounds is now a major scientific issue for organic chemists around the world.

The Structure-Function Linkage Database.

Science.gov (United States)

Akiva, Eyal; Brown, Shoshana; Almonacid, Daniel E; Barber, Alan E; Custer, Ashley F; Hicks, Michael A; Huang, Conrad C; Lauck, Florian; Mashiyama, Susan T; Meng, Elaine C; Mischel, David; Morris, John H; Ojha, Sunil; Schnoes, Alexandra M; Stryke, Doug; Yunes, Jeffrey M; Ferrin, Thomas E; Holliday, Gemma L; Babbitt, Patricia C

2014-01-01

The Structure-Function Linkage Database (SFLD, http://sfld.rbvi.ucsf.edu/) is a manually curated classification resource describing structure-function relationships for functionally diverse enzyme superfamilies. Members of such superfamilies are diverse in their overall reactions yet share a common ancestor and some conserved active site features associated with conserved functional attributes such as a partial reaction. Thus, despite their different functions, members of these superfamilies 'look alike', making them easy to misannotate. To address this complexity and enable rational transfer of functional features to unknowns only for those members for which we have sufficient functional information, we subdivide superfamily members into subgroups using sequence information, and lastly into families, sets of enzymes known to catalyze the same reaction using the same mechanistic strategy. Browsing and searching options in the SFLD provide access to all of these levels. The SFLD offers manually curated as well as automatically classified superfamily sets, both accompanied by search and download options for all hierarchical levels. Additional information includes multiple sequence alignments, tab-separated files of functional and other attributes, and sequence similarity networks. The latter provide a new and intuitively powerful way to visualize functional trends mapped to the context of sequence similarity.

Structure functions and correlations in nuclei

International Nuclear Information System (INIS)

Schiavilla, R.; Lewart, D.S.; Pandharipande, V.R.

1987-01-01

The static longitudinal structure function S l (k) and the static structure function S(k) of 3 H, 3 He and 4 He nuclei and nuclear matter are calculated using realistic wave functions obtained from Faddeev and variational calculations. In order to study the variation of the structure function with the number of particles in the system we also calculate S(k) of atomic helium liquid drops containing 4, 8, 20, 40, 70, 168 and 240 atoms. Monte Carlo integration is used to calculate the structure functions of finite systems, while those of nuclear matter are calculated with chain summation methods. The behaivior of S(k) and S l (k) at small values of k is discussed. We find that the recent Saclay data on S l (k) of the 3 He nucleus are in agreement with theory. Though the data indicate the the existence of correlations between the two protons in the 3 He nucleus, they are not accurate enough to draw interesting conclusions about the repulsive core in the nucleon-nucleon interaction. The structure functions of atomic helium liquid drops indicate a smooth variation of S(k) with the number of atoms in the drop. The S L (k) of the 4 He nucleus and nuclear matter are very similar for k > 1.5 fm -1 , and it appears plausible that S L (k) of nuclei having A > 3 may not depend significantly on A when k > 1.5 fm -1 . (orig.)

Geometric scaling behavior of the scattering amplitude for DIS with nuclei

Science.gov (United States)

Kormilitzin, Andrey; Levin, Eugene; Tapia, Sebastian

2011-12-01

The main question, that we answer in this paper, is whether the initial condition can influence on the geometric scaling behavior of the amplitude for DIS at high energy. We re-write the non-linear Balitsky-Kovchegov equation in the form which is useful for treating the interaction with nuclei. Using the simplified BFKL kernel, we find the analytical solution to this equation with the initial condition given by the McLerran-Venugopalan formula. This solution does not show the geometric scaling behavior of the amplitude deeply in the saturation region. On the other hand, the BFKL Pomeron calculus with the initial condition at x=1/mR given by the solution to Balitsky-Kovchegov equation, leads to the geometric scaling behavior. The McLerran-Venugopalan formula is the natural initial condition for the Color Glass Condensate (CGC) approach. Therefore, our result gives a possibility to check experimentally which approach: CGC or BFKL Pomeron calculus, is more satisfactory.

Geometric scaling behavior of the scattering amplitude for DIS with nuclei

International Nuclear Information System (INIS)

Kormilitzin, Andrey; Levin, Eugene; Tapia, Sebastian

2011-01-01

The main question, that we answer in this paper, is whether the initial condition can influence on the geometric scaling behavior of the amplitude for DIS at high energy. We re-write the non-linear Balitsky–Kovchegov equation in the form which is useful for treating the interaction with nuclei. Using the simplified BFKL kernel, we find the analytical solution to this equation with the initial condition given by the McLerran–Venugopalan formula. This solution does not show the geometric scaling behavior of the amplitude deeply in the saturation region. On the other hand, the BFKL Pomeron calculus with the initial condition at x A =1/mR A given by the solution to Balitsky–Kovchegov equation, leads to the geometric scaling behavior. The McLerran–Venugopalan formula is the natural initial condition for the Color Glass Condensate (CGC) approach. Therefore, our result gives a possibility to check experimentally which approach: CGC or BFKL Pomeron calculus, is more satisfactory.

A possible form of the pion's structure function

International Nuclear Information System (INIS)

Long Ming; Huang Tao

1986-01-01

The pion's structure function behaviour is discussed by using the Fock state expansion of the hadronic wave function in QCD in this paper. As an example, we employ a model wave function of the Fock state in the light-cone and assume a Regge behaviour of a weight function for higher Fock states, and we get a possible form of the pion's structure function. This form is consistent with experimental data of the pion's structure function

Functional nanometer-scale structures

Science.gov (United States)

Chan, Tsz On Mario

Nanometer-scale structures have properties that are fundamentally different from their bulk counterparts. Much research effort has been devoted in the past decades to explore new fabrication techniques, model the physical properties of these structures, and construct functional devices. The ability to manipulate and control the structure of matter at the nanoscale has made many new classes of materials available for the study of fundamental physical processes and potential applications. The interplay between fabrication techniques and physical understanding of the nanostructures and processes has revolutionized the physical and material sciences, providing far superior properties in materials for novel applications that benefit society. This thesis consists of two major aspects of my graduate research in nano-scale materials. In the first part (Chapters 3--6), a comprehensive study on the nanostructures based on electrospinning and thermal treatment is presented. Electrospinning is a well-established method for producing high-aspect-ratio fibrous structures, with fiber diameter ranging from 1 nm--1 microm. A polymeric solution is typically used as a precursor in electrospinning. In our study, the functionality of the nanostructure relies on both the nanostructure and material constituents. Metallic ions containing precursors were added to the polymeric precursor following a sol-gel process to prepare the solution suitable for electrospinning. A typical electrospinning process produces as-spun fibers containing both polymer and metallic salt precursors. Subsequent thermal treatments of the as-spun fibers were carried out in various conditions to produce desired structures. In most cases, polymer in the solution and the as-spun fibers acted as a backbone for the structure formation during the subsequent heat treatment, and were thermally removed in the final stage. Polymers were also designed to react with the metallic ion precursors during heat treatment in some

Structure-function relationships during segregated and integrated network states of human brain functional connectivity.

Science.gov (United States)

Fukushima, Makoto; Betzel, Richard F; He, Ye; van den Heuvel, Martijn P; Zuo, Xi-Nian; Sporns, Olaf

2018-04-01

Structural white matter connections are thought to facilitate integration of neural information across functionally segregated systems. Recent studies have demonstrated that changes in the balance between segregation and integration in brain networks can be tracked by time-resolved functional connectivity derived from resting-state functional magnetic resonance imaging (rs-fMRI) data and that fluctuations between segregated and integrated network states are related to human behavior. However, how these network states relate to structural connectivity is largely unknown. To obtain a better understanding of structural substrates for these network states, we investigated how the relationship between structural connectivity, derived from diffusion tractography, and functional connectivity, as measured by rs-fMRI, changes with fluctuations between segregated and integrated states in the human brain. We found that the similarity of edge weights between structural and functional connectivity was greater in the integrated state, especially at edges connecting the default mode and the dorsal attention networks. We also demonstrated that the similarity of network partitions, evaluated between structural and functional connectivity, increased and the density of direct structural connections within modules in functional networks was elevated during the integrated state. These results suggest that, when functional connectivity exhibited an integrated network topology, structural connectivity and functional connectivity were more closely linked to each other and direct structural connections mediated a larger proportion of neural communication within functional modules. Our findings point out the possibility of significant contributions of structural connections to integrative neural processes underlying human behavior.

Clustering aspects in nuclear structure functions

International Nuclear Information System (INIS)

Hirai, M.; Saito, K.; Watanabe, T.; Kumano, S.

2011-01-01

For understanding an anomalous nuclear effect experimentally observed for the beryllium-9 nucleus at the Thomas Jefferson National Accelerator Facility, clustering aspects are studied in structure functions of deep inelastic lepton-nucleus scattering by using momentum distributions calculated in antisymmetrized (or fermionic) molecular dynamics (AMD) and also in a simple shell model for comparison. According to AMD, the 9 Be nucleus consists of two α-like clusters with a surrounding neutron. The clustering produces high-momentum components in nuclear wave functions, which affects nuclear modifications of the structure functions. We investigated whether clustering features could appear in the structure function F 2 of 9 Be along with studies for other light nuclei. We found that nuclear modifications of F 2 are similar in both AMD and shell models within our simple convolution description although there are slight differences in 9 Be. It indicates that the anomalous 9 Be result should be explained by a different mechanism from the nuclear binding and Fermi motion. If nuclear-modification slopes d(F 2 A /F 2 D )/dx are shown by the maximum local densities, the 9 Be anomaly can be explained by the AMD picture, namely by the clustering structure, whereas it certainly cannot be described in the simple shell model. This fact suggests that the large nuclear modification in 9 Be should be explained by large densities in the clusters. For example, internal nucleon structure could be modified in the high-density clusters. The clustering aspect of nuclear structure functions is an unexplored topic which is interesting for future investigations.

Magnetism and Structure in Functional Materials

CERN Document Server

Planes, Antoni; Saxena, Avadh

2005-01-01

Magnetism and Structure in Functional Materials addresses three distinct but related topics: (i) magnetoelastic materials such as magnetic martensites and magnetic shape memory alloys, (ii) the magnetocaloric effect related to magnetostructural transitions, and (iii) colossal magnetoresistance (CMR) and related magnanites. The goal is to identify common underlying principles in these classes of materials that are relevant for optimizing various functionalities. The emergence of apparently different magnetic/structural phenomena in disparate classes of materials clearly points to a need for common concepts in order to achieve a broader understanding of the interplay between magnetism and structure in this general class of new functional materials exhibiting ever more complex microstructure and function. The topic is interdisciplinary in nature and the contributors correspondingly include physicists, materials scientists and engineers. Likewise the book will appeal to scientists from all these areas.

The triad value function

DEFF Research Database (Denmark)

Vedel, Mette

2016-01-01

the triad value function. Next, the applicability and validity of the concept is examined in a case study of four closed vertical supply chain triads. Findings - The case study demonstrates that the triad value function facilitates the analysis and understanding of an apparent paradox; that distributors...... are not dis-intermediated in spite of their limited contribution to activities in the triads. The results indicate practical adequacy of the triad value function. Research limitations/implications - The triad value function is difficult to apply in the study of expanded networks as the number of connections...... expands exponentially with the number of ties in the network. Moreover, it must be applied in the study of service triads and open vertical supply chain triads to further verify the practical adequacy of the concept. Practical implications - The triad value function cannot be used normatively...

Summary of the Photon Structure Functions - Measurements at LEP

International Nuclear Information System (INIS)

Przybycien, M.

2002-01-01

The present status of the photon structure functions measurements at LEP is discussed. The short introduction to the kinematics and theoretical framework of the structure functions measurements at LEP is given first. Then follow presentations of the most important measurements, ranging from the QED photon structure function, through the hadronic structure functions of real and virtual photons, and at the end the first measurement of the electron structure function is shown. (author)

Effective constraint algebras with structure functions

International Nuclear Information System (INIS)

Bojowald, Martin; Brahma, Suddhasattwa

2016-01-01

This article presents the result that fluctuations and higher moments of a state, by themselves, do not imply quantum corrections in structure functions of constrained systems. Moment corrections are isolated from other types of quantum effects, such as factor-ordering choices and regularization, by introducing a new condition with two parts: (i) having a direct (or faithful) quantization of the classical structure functions, (ii) free of factor-ordering ambiguities. In particular, it is assumed that the classical constraints can be quantized in an anomaly free way, so that properties of the resulting constraint algebras can be derived. If the two-part condition is not satisfied, effective constraints can still be evaluated, but quantum effects may be stronger. Consequences for canonical quantum gravity, whose structure functions encode space–time structure, are discussed. In particular, deformed algebras found in models of loop quantum gravity provide reliable information even in the Planck regime. (paper)

Optical Absorption in Molecular Crystals from Time-Dependent Density Functional Theory

Science.gov (United States)

2017-04-23

Our approach represents a full solid-state calculation, allowing for polarization ef- fects while still capable of capturing inter-molecular dis...AFRL-AFOSR-UK-TR-2017-0030 Optical absorption in molecular crystals from time-dependent density functional theory Leeor Kronik WEIZMANN INSTITUTE OF...from time-dependent density functional theory 5a.  CONTRACT NUMBER 5b.  GRANT NUMBER FA9550-15-1-0290 5c.  PROGRAM ELEMENT NUMBER 61102F 6. AUTHOR(S

The notochord: structure and functions.

Science.gov (United States)

Corallo, Diana; Trapani, Valeria; Bonaldo, Paolo

2015-08-01

The notochord is an embryonic midline structure common to all members of the phylum Chordata, providing both mechanical and signaling cues to the developing embryo. In vertebrates, the notochord arises from the dorsal organizer and it is critical for proper vertebrate development. This evolutionary conserved structure located at the developing midline defines the primitive axis of embryos and represents the structural element essential for locomotion. Besides its primary structural function, the notochord is also a source of developmental signals that patterns surrounding tissues. Among the signals secreted by the notochord, Hedgehog proteins play key roles during embryogenesis. The Hedgehog signaling pathway is a central regulator of embryonic development, controlling the patterning and proliferation of a wide variety of organs. In this review, we summarize the current knowledge on notochord structure and functions, with a particular emphasis on the key developmental events that take place in vertebrates. Moreover, we discuss some genetic studies highlighting the phenotypic consequences of impaired notochord development, which enabled to understand the molecular basis of different human congenital defects and diseases.

Structural Insights into the Association of Hif1 with Histones H2A-H2B Dimer and H3-H4 Tetramer.

Science.gov (United States)

Zhang, Mengying; Liu, Hejun; Gao, Yongxiang; Zhu, Zhongliang; Chen, Zijun; Zheng, Peiyi; Xue, Lu; Li, Jixi; Teng, Maikun; Niu, Liwen

2016-10-04

Histone chaperones are critical for guiding specific post-transcriptional modifications of histones, safeguarding the histone deposition (or disassociation) of nucleosome (dis)assembly, and regulating chromatin structures to change gene activities. HAT1-interacting factor 1 (Hif1) has been reported to be an H3-H4 chaperone and to be involved in telomeric silencing and nucleosome (dis)assembly. However, the structural basis for the interaction of Hif1 with histones remains unknown. Here, we report the complex structure of Hif1 binding to H2A-H2B for uncovering the chaperone specificities of Hif1 on binding to both the H2A-H2B dimer and the H3-H4 tetramer. Our findings reveal that Hif1 interacts with the H2A-H2B dimer and the H3-H4 tetramer via distinct mechanisms, suggesting that Hif1 is a pivotal scaffold on alternate binding of H2A-H2B and H3-H4. These specificities are conserved features of the Sim3-Hif1-NASP interrupted tetratricopeptide repeat proteins, which provide clues for investigating their potential roles in nucleosome (dis)assembly. Copyright © 2016 Elsevier Ltd. All rights reserved.

Introduction to structure functions

International Nuclear Information System (INIS)

Kwiecinski, J.

1996-07-01

The theory of deep inelastic scattering structure functions is reviewed with an emphasis put on the QCD expectations of their behaviour in the region of small values of Bjorken parameter x. (author). 56 refs

A density functional study of backbone structures of polydiacetylene: destabilization of butatriene structure

International Nuclear Information System (INIS)

Katagiri, Hideki; Shimoi, Yukihiro; Abe, Shuji

2004-01-01

Backbone structures of polydiacetylene are studied with first-principles electronic structure method using plane-waves within generalized gradient approximation (GGA) of density functional theory. In spin-restricted calculations a coarse k-point sampling gives a potential energy curve with two local minima corresponding to acetylene and butatriene structures. However, the potential barrier between the two structures rapidly decreases with increasing number of k-points, which results in destabilization of the butatriene structure. Spin polarization effects also destabilize the butatriene structure, inducing atom-centered spin-density-wave state. These potential energies were compared with those obtained by Hartree-Fock, density functional within local density approximation (LDA) and GGA, and hybrid density functional methods using a gaussian basis set. The comparison shows that the density functional methods within LDA and GGA favor the destabilization of the butatriene structure in contrast to the Hartree-Fock method

Network structure shapes spontaneous functional connectivity dynamics.

Science.gov (United States)

Shen, Kelly; Hutchison, R Matthew; Bezgin, Gleb; Everling, Stefan; McIntosh, Anthony R

2015-04-08

The structural organization of the brain constrains the range of interactions between different regions and shapes ongoing information processing. Therefore, it is expected that large-scale dynamic functional connectivity (FC) patterns, a surrogate measure of coordination between brain regions, will be closely tied to the fiber pathways that form the underlying structural network. Here, we empirically examined the influence of network structure on FC dynamics by comparing resting-state FC (rsFC) obtained using BOLD-fMRI in macaques (Macaca fascicularis) to structural connectivity derived from macaque axonal tract tracing studies. Consistent with predictions from simulation studies, the correspondence between rsFC and structural connectivity increased as the sample duration increased. Regions with reciprocal structural connections showed the most stable rsFC across time. The data suggest that the transient nature of FC is in part dependent on direct underlying structural connections, but also that dynamic coordination can occur via polysynaptic pathways. Temporal stability was found to be dependent on structural topology, with functional connections within the rich-club core exhibiting the greatest stability over time. We discuss these findings in light of highly variable functional hubs. The results further elucidate how large-scale dynamic functional coordination exists within a fixed structural architecture. Copyright © 2015 the authors 0270-6474/15/355579-10$15.00/0.

Mind, brain, structure and function

Energy Technology Data Exchange (ETDEWEB)

Aleksander, I

1982-01-01

The author discusses the type of problem one encounters when trying to formalise the nature of a state structure associated with the brain and the origins of this state structure. The paper first defines in broad terms the nature of the structure function problem, and then goes on to separate out those parts of a structure that lead to the variational and adaptive nature of the state structure. It is argued that the relationship between the structure that leads to adaptation and its embedding in an external environment are crucial areas for further study. 4 references.

Photon-photon collisions and photon structure functions at LEP

CERN Document Server

Patt, J

2000-01-01

The present knowledge of the structure of the photon based on measurements of photon structure functions is discussed. This review covers recent results on QED structure functions and on the hadronic structure function F/sub 2//sup gamma /. (13 refs).

QCD predictions for weak neutral current structure functions

International Nuclear Information System (INIS)

Wu Jimin

1987-01-01

Employing the analytic expression (to the next leading order) for non-singlet component of structure function which the author got from QCD theory and putting recent experiment result of neutral current structure function at Q 2 = 11 (GeV/C) 2 as input, the QCD prediction for neutral current structure function of their scaling violation behaviours was given

An approach to the structure function for nucleon

International Nuclear Information System (INIS)

Long Ming

1986-01-01

The structure function for nucleon is discussed by using the method given in a previous paper. The formula are compared with the experimental data from low Q 2 to high Q 2 . The results show that the way that the structure function for nucleon can be obtained from the hadronic wavefunction is a possible approach of investigating structure functions for hadron

Four RNA families with functional transient structures.

Science.gov (United States)

Zhu, Jing Yun A; Meyer, Irmtraud M

2015-01-01

Protein-coding and non-coding RNA transcripts perform a wide variety of cellular functions in diverse organisms. Several of their functional roles are expressed and modulated via RNA structure. A given transcript, however, can have more than a single functional RNA structure throughout its life, a fact which has been previously overlooked. Transient RNA structures, for example, are only present during specific time intervals and cellular conditions. We here introduce four RNA families with transient RNA structures that play distinct and diverse functional roles. Moreover, we show that these transient RNA structures are structurally well-defined and evolutionarily conserved. Since Rfam annotates one structure for each family, there is either no annotation for these transient structures or no such family. Thus, our alignments either significantly update and extend the existing Rfam families or introduce a new RNA family to Rfam. For each of the four RNA families, we compile a multiple-sequence alignment based on experimentally verified transient and dominant (dominant in terms of either the thermodynamic stability and/or attention received so far) RNA secondary structures using a combination of automated search via covariance model and manual curation. The first alignment is the Trp operon leader which regulates the operon transcription in response to tryptophan abundance through alternative structures. The second alignment is the HDV ribozyme which we extend to the 5' flanking sequence. This flanking sequence is involved in the regulation of the transcript's self-cleavage activity. The third alignment is the 5' UTR of the maturation protein from Levivirus which contains a transient structure that temporarily postpones the formation of the final inhibitory structure to allow translation of maturation protein. The fourth and last alignment is the SAM riboswitch which regulates the downstream gene expression by assuming alternative structures upon binding of SAM. All

Optimal investment and indifference pricing when risk aversion is not monotone: SAHARA utility functions

NARCIS (Netherlands)

Chen, A.; Pelsser, A.; Vellekoop, M.

2008-01-01

Abstract. We develop a new class of utility functions, SAHARA utility, with the dis- tinguishing feature that they implement the assumption that agents may become less risk-averse for very low values of wealth. This means that SAHARA utility can be used to characterize risk gambling behavior of an

Using the structure-function linkage database to characterize functional domains in enzymes.

Science.gov (United States)

Brown, Shoshana; Babbitt, Patricia

2014-12-12

The Structure-Function Linkage Database (SFLD; http://sfld.rbvi.ucsf.edu/) is a Web-accessible database designed to link enzyme sequence, structure, and functional information. This unit describes the protocols by which a user may query the database to predict the function of uncharacterized enzymes and to correct misannotated functional assignments. The information in this unit is especially useful in helping a user discriminate functional capabilities of a sequence that is only distantly related to characterized sequences in publicly available databases. Copyright © 2014 John Wiley & Sons, Inc.

Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models.

Directory of Open Access Journals (Sweden)

2005-08-01

Full Text Available The bias in protein structure and function space resulting from experimental limitations and targeting of particular functional classes of proteins by structural biologists has long been recognized, but never continuously quantified. Using the Enzyme Commission and the Gene Ontology classifications as a reference frame, and integrating structure data from the Protein Data Bank (PDB, target sequences from the structural genomics projects, structure homology derived from the SUPERFAMILY database, and genome annotations from Ensembl and NCBI, we provide a quantified view, both at the domain and whole-protein levels, of the current and projected coverage of protein structure and function space relative to the human genome. Protein structures currently provide at least one domain that covers 37% of the functional classes identified in the genome; whole structure coverage exists for 25% of the genome. If all the structural genomics targets were solved (twice the current number of structures in the PDB, it is estimated that structures of one domain would cover 69% of the functional classes identified and complete structure coverage would be 44%. Homology models from existing experimental structures extend the 37% coverage to 56% of the genome as single domains and 25% to 31% for complete structures. Coverage from homology models is not evenly distributed by protein family, reflecting differing degrees of sequence and structure divergence within families. While these data provide coverage, conversely, they also systematically highlight functional classes of proteins for which structures should be determined. Current key functional families without structure representation are highlighted here; updated information on the "most wanted list" that should be solved is available on a weekly basis from http://function.rcsb.org:8080/pdb/function_distribution/index.html.

Exponentiation of the Drell-Yan an cross section near partonic threshold in the DIS and MS-bar schemes

International Nuclear Information System (INIS)

Eynck, Tim Oliver; Laenen, Eric; Magnea, Lorenzo

2003-01-01

It has been observed that in the DIS scheme the refactorization of the Drell-Yan cross section leading to exponentiation of threshold logarithms can also be used to organize a class of constant terms, most of which arise from the ratio of the timelike Sudakov form factor to its spacelike counterpart. We extend this exponentiation to include all constant terms, and demonstrate how a similar organization may be achieved in the MS-bar scheme. We study the relevance of these exponentiations in a two-loop analysis. (author)

Functional classification of protein structures by local structure matching in graph representation.

Science.gov (United States)

Mills, Caitlyn L; Garg, Rohan; Lee, Joslynn S; Tian, Liang; Suciu, Alexandru; Cooperman, Gene; Beuning, Penny J; Ondrechen, Mary Jo

2018-03-31

As a result of high-throughput protein structure initiatives, over 14,400 protein structures have been solved by structural genomics (SG) centers and participating research groups. While the totality of SG data represents a tremendous contribution to genomics and structural biology, reliable functional information for these proteins is generally lacking. Better functional predictions for SG proteins will add substantial value to the structural information already obtained. Our method described herein, Graph Representation of Active Sites for Prediction of Function (GRASP-Func), predicts quickly and accurately the biochemical function of proteins by representing residues at the predicted local active site as graphs rather than in Cartesian coordinates. We compare the GRASP-Func method to our previously reported method, structurally aligned local sites of activity (SALSA), using the ribulose phosphate binding barrel (RPBB), 6-hairpin glycosidase (6-HG), and Concanavalin A-like Lectins/Glucanase (CAL/G) superfamilies as test cases. In each of the superfamilies, SALSA and the much faster method GRASP-Func yield similar correct classification of previously characterized proteins, providing a validated benchmark for the new method. In addition, we analyzed SG proteins using our SALSA and GRASP-Func methods to predict function. Forty-one SG proteins in the RPBB superfamily, nine SG proteins in the 6-HG superfamily, and one SG protein in the CAL/G superfamily were successfully classified into one of the functional families in their respective superfamily by both methods. This improved, faster, validated computational method can yield more reliable predictions of function that can be used for a wide variety of applications by the community. © 2018 The Authors Protein Science published by Wiley Periodicals, Inc. on behalf of The Protein Society.

A statistical model for porous structure of rocks

Institute of Scientific and Technical Information of China (English)

JU Yang; YANG YongMing; SONG ZhenDuo; XU WenJing

2008-01-01

The geometric features and the distribution properties of pores in rocks were In-vestigated by means of CT scanning tests of sandstones. The centroidal coordl-nares of pores, the statistic characterristics of pore distance, quantity, size and their probability density functions were formulated in this paper. The Monte Carlo method and the random number generating algorithm were employed to generate two series of random numbers with the desired statistic characteristics and prob-ability density functions upon which the random distribution of pore position, dis-tance and quantity were determined. A three-dimensional porous structural model of sandstone was constructed based on the FLAC3D program and the information of the pore position and distribution that the series of random numbers defined. On the basis of modelling, the Brazil split tests of rock discs were carried out to ex-amine the stress distribution, the pattern of element failure and the inoaculation of failed elements. The simulation indicated that the proposed model was consistent with the realistic porous structure of rock in terms of their statistic properties of pores and geometric similarity. The built-up model disclosed the influence of pores on the stress distribution, failure mode of material elements and the inosculation of failed elements.

A statistical model for porous structure of rocks

Institute of Scientific and Technical Information of China (English)

2008-01-01

The geometric features and the distribution properties of pores in rocks were in- vestigated by means of CT scanning tests of sandstones. The centroidal coordi- nates of pores, the statistic characterristics of pore distance, quantity, size and their probability density functions were formulated in this paper. The Monte Carlo method and the random number generating algorithm were employed to generate two series of random numbers with the desired statistic characteristics and prob- ability density functions upon which the random distribution of pore position, dis- tance and quantity were determined. A three-dimensional porous structural model of sandstone was constructed based on the FLAC3D program and the information of the pore position and distribution that the series of random numbers defined. On the basis of modelling, the Brazil split tests of rock discs were carried out to ex- amine the stress distribution, the pattern of element failure and the inosculation of failed elements. The simulation indicated that the proposed model was consistent with the realistic porous structure of rock in terms of their statistic properties of pores and geometric similarity. The built-up model disclosed the influence of pores on the stress distribution, failure mode of material elements and the inosculation of failed elements.

Structure and Functions of Linker Histones.

Science.gov (United States)

Lyubitelev, A V; Nikitin, D V; Shaytan, A K; Studitsky, V M; Kirpichnikov, M P

2016-03-01

Linker histones such as variants H1, H5, and other similar proteins play an important role in regulation of chromatin structure and dynamics. However, interactions of linker histones with DNA and proteins, as well as specific functions of their different variants, are poorly studied. This is because they acquire tertiary structure only when interacting with a nucleosome, and because of limitations of currently available methods. However, deeper investigation of linker histones and their interactions with other proteins will address a number of important questions - from structure of compacted chromatin to regulation of early embryogenesis. In this review, structures of histone H1 variants and its interaction with chromatin DNA are considered. A possible functional significance of different H1 variants, a role of these proteins in maintaining interphase chromatin structure, and interactions of linker histones with other cellular proteins are also discussed.

Functional Generalized Structured Component Analysis.

Science.gov (United States)

Suk, Hye Won; Hwang, Heungsun

2016-12-01

An extension of Generalized Structured Component Analysis (GSCA), called Functional GSCA, is proposed to analyze functional data that are considered to arise from an underlying smooth curve varying over time or other continua. GSCA has been geared for the analysis of multivariate data. Accordingly, it cannot deal with functional data that often involve different measurement occasions across participants and a large number of measurement occasions that exceed the number of participants. Functional GSCA addresses these issues by integrating GSCA with spline basis function expansions that represent infinite-dimensional curves onto a finite-dimensional space. For parameter estimation, functional GSCA minimizes a penalized least squares criterion by using an alternating penalized least squares estimation algorithm. The usefulness of functional GSCA is illustrated with gait data.

Collagens--structure, function, and biosynthesis.

Science.gov (United States)

Gelse, K; Pöschl, E; Aigner, T

2003-11-28

The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified so far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. This review focuses on the distribution and function of various collagen types in different tissues. It introduces their basic structural subunits and points out major steps in the biosynthesis and supramolecular processing of fibrillar collagens as prototypical members of this protein family. A final outlook indicates the importance of different collagen types not only for the understanding of collagen-related diseases, but also as a basis for the therapeutical use of members of this protein family discussed in other chapters of this issue.

Structure and Function of Your Skin

Science.gov (United States)

... Name: Category: Share: Yes No, Keep Private Structure & Function of Your Skin Share | What It Looks Like . . . ... in the dermis. What It Does . . . The major function of skin is to provide a barrier between ...

Higher Mellin moments for charged current DIS

International Nuclear Information System (INIS)

Rogal, M.; Moch, S.

2007-06-01

We report on our recent results for deep-inelastic neutrino(ν)-proton(P) scattering. We have computed the perturbative QCD corrections to three loops for the charged current structure functions F 2 , F L and F 3 for the combination νP- anti νP. In leading twist approximation we have calculated the first six odd-integer Mellin moments in the case of F 2 and F L and the first six even-integer moments in the case of F 3 . As a new result we have obtained the coefficient functions to O(α 3 s ) and we have found the corresponding anomalous dimensions to agree with known results in the literature. (orig.)

The structural science of functional materials.

Science.gov (United States)

Catlow, C Richard A

2018-01-01

The growing complexity of functional materials and the major challenges this poses to structural science are discussed. The diversity of structural materials science and the contributions that computation is making to the field are highlighted.

Disturbance, Functional Diversity and Ecosystem Processes: Does Species Identity Matter?

OpenAIRE

Emrick III, Verl Roy

2013-01-01

The role of disturbance is widely recognized as a fundamental driver of ecological organization from individual species to entire landscapes. Anthropogenic disturbances from military training provide a unique opportunity to examine effects of disturbance on vegetation dynamics, physicochemical soil properties, and ecosystem processes. Additionally, plant functional diversity has been suggested as the key to ecosystem processes such as productivity and nutrient dynamics. I investigated how dis...

Second-order QCD analysis of the photon structure function

International Nuclear Information System (INIS)

Antoniadis, I.; Grunberg, G.

1983-01-01

The QCD predictions for the photon structure function are reexamined with particular emphasis on the small-x behavior. A simple parametrization of the real photon structure function, free of 1/x singularity, is derived. The structure function is found to be sensitive at small x to the non-perturbatively calculable constant term in the n=2 moment, and we show that the problem of a negative structure function can be solved on the basis of the knowledge of this single non-perturbative parameter. (orig.)

AGE STRUCTURE OR FUNCTIONAL RESPONSE? RECONCILING ...

African Journals Online (AJOL)

... surplus production that differ from traditional single-species management models. ... Specifically, while the ECOSIM “Arena” functional response and the von ... as a proxy for age structure rather than as a function of predator/prey behaviour, ...

EFFECTIVE HYPERFINE-STRUCTURE FUNCTIONS OF AMMONIA

Energy Technology Data Exchange (ETDEWEB)

Augustovičová, L.; Soldán, P.; Špirko, V., E-mail: spirko@marge.uochb.cas.cz [Charles University in Prague, Faculty of Mathematics and Physics, Department of Chemical Physics and Optics, Ke Karlovu 3, CZ-12116 Prague 2 (Czech Republic)

2016-06-20

The hyperfine structure of the rotation-inversion ( v {sub 2} = 0{sup +}, 0{sup −}, 1{sup +}, 1{sup −}) states of the {sup 14}NH{sub 3} and {sup 15}NH{sub 3} ammonia isotopomers is rationalized in terms of effective (ro-inversional) hyperfine-structure (hfs) functions. These are determined by fitting to available experimental data using the Hougen’s effective hyperfine-structure Hamiltonian within the framework of the non-rigid inverter theory. Involving only a moderate number of mass independent fitting parameters, the fitted hfs functions provide a fairly close reproduction of a large majority of available experimental data, thus evidencing adequacy of these functions for reliable prediction. In future experiments, this may help us derive spectroscopic constants of observed inversion and rotation-inversion transitions deperturbed from hyperfine effects. The deperturbed band centers of ammonia come to the forefront of fundamental physics especially as the probes of a variable proton-to-electron mass ratio.

Witnessman: The software tool to design, analyse and assess a witness pack with respect to military and medical effects on an (UN)protected (DIS)mounted soldier

NARCIS (Netherlands)

Verhagen, Th.L.A.; Kemper, R.; Huisjes, H.; Knijnenburg, S.G.; Pronk, A.; Klink, M.H. van

2005-01-01

Witness packs are widely used to enable the characterization of fragments generated during ballistic experiments. To assess the effect of fragment impact on an exposed (dis)mounted soldier a follow-up Vulnerability/ Lethality (V/L) simulation is essential. The overall process is elaborative and time

Unitarized model of inclusive and diffractive DIS with Q2 evolution

International Nuclear Information System (INIS)

Armesto, Nestor; Salgado, Carlos A.; Tywoniuk, Konrad; Kaidalov, Alexei B.

2010-01-01

We discuss the interplay of low-x physics and QCD scaling violations by extending the unified approach describing inclusive structure functions and diffractive production in γ*p interactions proposed in previous papers to large values of Q 2 . We describe the procedure of extracting, from the nonperturbative model, initial conditions for the QCD evolution that respect unitarity. Assuming Regge factorization of the diffractive structure function, a similar procedure is proposed for the calculation of hard diffraction. The results are in good agreement with experimental data on the proton structure function F 2 and the most recent data on the reduced diffractive cross section, x P σ r D(3) . Predictions for both F 2 and F L are presented in a wide kinematical range and compared to calculations within high-energy QCD.

Electron-deuteron deep-inelastic scattering with spectator nucleon tagging and final-state interactions at intermediate x

Science.gov (United States)

Strikman, M.; Weiss, C.

2018-03-01

We consider electron-deuteron deep-inelastic scattering (DIS) with detection of a proton in the nuclear fragmentation region ("spectator tagging") as a method for extracting the free neutron structure functions and studying their nuclear modifications. Such measurements could be performed at a future electron-ion collider (EIC) with suitable forward detectors. The measured proton recoil momentum (≲100 MeV in the deuteron rest frame) specifies the deuteron configuration during the high-energy process and permits a controlled theoretical treatment of nuclear effects. Nuclear and nucleonic structure are separated using methods of light-front quantum mechanics. The impulse approximation to the tagged DIS cross section contains the free neutron pole, which can be reached by on-shell extrapolation in the recoil momentum. Final-state interactions (FSIs) distort the recoil momentum distribution away from the pole. In the intermediate-x region 0.1 rest frame momenta ≲1 GeV , target fragmentation region). We construct a schematic model describing this effect, using final-state hadron distributions measured in nucleon DIS experiments and low-energy hadron scattering amplitudes. We investigate the magnitude of FSIs, their dependence on the recoil momentum (angular dependence, forward/backward regions), their analytic properties, and their effect on the on-shell extrapolation. We comment on the prospects for neutron structure extraction in tagged DIS with an EIC. We discuss possible extensions of the FSI model to other kinematic regions (large/small x ). In tagged DIS at x ≪0.1 FSIs resulting from diffractive scattering on the nucleons become important and require separate treatment.

Nucleon structure functions, resonance form factors, and duality

International Nuclear Information System (INIS)

Davidovsky, V.V.; Struminsky, B.V.

2003-01-01

The behavior of nucleon structure functions in the resonance region is explored. For form factors that describe resonance production, expressions are obtained that are dependent on the photon virtuality Q 2 , which have a correct threshold behavior, and which take into account available experimental data on resonance decay. Resonance contributions to nucleon structure functions are calculated. The resulting expressions are used to investigate quark-hadron duality in electron-nucleon scattering by taking the example of the structure function F 2

DNA: Structure and function

DEFF Research Database (Denmark)

Sinden, Richard R.; E. Pearson, Christopher; N. Potaman, Vladimir

1998-01-01

This chapter discusses the structure and function of DNA. DNA occupies a critical role in cells, because it is the source of all intrinsic genetic information. Chemically, DNA is a very stable molecule, a characteristic important for a macromolecule that may have to persist in an intact form...

The Nietzsche’s “Error”, God is not Dead: the (dis enchantment of the world

Directory of Open Access Journals (Sweden)

Donizete Rodrigues

2017-10-01

Full Text Available From the Nietzsche’s emphasis that God is dead – basic principle of the secularization – and the concept of religion, from the substantivist and functionalist perspectives, this paper addresses the contribution of some authors, classical (Marx, Weber, Durkheim, Freud and modern (Eliade, Bourdieu, Habermas, Hervieu-Leger, Grace Davie, Heelas, in the important discussion of the (dis enchantment of the world. Another issue considered is the role of religion in the contemporary society, in the context of a “reenchanted” world, with significant changes in the “market of symbolic goods”, characterized by an individualization/privatization of faith, deterritorialization of the sacred space, religious pluralism (with new and diffused religious practices and by the phenomenon of Pentecostalism.

Deep inelastic singlet structure functions and scaling violation

Energy Technology Data Exchange (ETDEWEB)

Wen-zhu, Li; Bing-xun, Hu

1984-02-01

The flavour singlet structure functions of deep inelastic scattering processes can yield more decisive tests of QCD than the non-singlet. We give analytical expression for flavour singlet structure functions through analysing the lepton-nucleon deep inelastic scattering processes by means of QCD and using Jacobi polynomials. This expression contains 4 to 5 parameters and shows the changes of the singlet structure functions with x and Q/sup 2/ very well. In QCD leading order, the conclusion is in reasonable agreement with experimental data.

Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data.

Science.gov (United States)

Wang, Peng; Guo, Qiuyan; Gao, Yue; Zhi, Hui; Zhang, Yan; Liu, Yue; Zhang, Jizhou; Yue, Ming; Guo, Maoni; Ning, Shangwei; Zhang, Guangmei; Li, Xia

2017-01-17

Although several computational models that predict disease-associated lncRNAs (long non-coding RNAs) exist, only a limited number of disease-associated lncRNAs are known. In this study, we mapped lncRNAs to their functional genomics context using competing endogenous RNAs (ceRNAs) theory. Based on the criteria that similar lncRNAs are likely involved in similar diseases, we proposed a disease lncRNA prioritization method, DisLncPri, to identify novel disease-lncRNA associations. Using a leave-one-out cross validation (LOOCV) strategy, DisLncPri achieved reliable area under curve (AUC) values of 0.89 and 0.87 for the LncRNADisease and Lnc2Cancer datasets that further improved to 0.90 and 0.89 by integrating a multiple rank fusion strategy. We found that DisLncPri had the highest rank enrichment score and AUC value in comparison to several other methods for case studies of alzheimer's disease, ovarian cancer, pancreatic cancer and gastric cancer. Several novel lncRNAs in the top ranks of these diseases were found to be newly verified by relevant databases or reported in recent studies. Prioritization of lncRNAs from a microarray (GSE53622) of oesophageal cancer patients highlighted ENSG00000226029 (top 2), a previously unidentified lncRNA as a potential prognostic biomarker. Our analysis thus indicates that DisLncPri is an excellent tool for identifying lncRNAs that could be novel biomarkers and therapeutic targets in a variety of human diseases.

Functional and planning structures of education institutions areas

OpenAIRE

Соколова, Юлія Віталіївна; Ковальська, Гелена Леонідівна

2014-01-01

The article discusses the main aspects of functional and planning organization of the education institutions. The features of the schools stationing in the city structure and its future extension are also defined. The major functional subdivisions are considered and the role of each of it in the education institution structure is investigated. The ratio of the functional zones depending on the specialization of educational institution is determined. The advantages of the functional zone coope...

Generalized fluid impulse functions for oscillating marine structures

Science.gov (United States)

Janardhanan, K.; Price, W. G.; Wu, Y.

1992-03-01

A selection of generalized impulse response functions is presented for a variety of rigid and flexible marine structures (i.e. mono-hull, SWATH, floating drydock and twin dock, fixed flexible pile). These functions are determined from calculated and experimental frequency-dependent hydrodynamic data, and the characteristics of these data depend on the type of structure considered. This information is reflected in the shape and duration of the generalized impulse response functions which are pre-requisites for a generalized integro-differential mathematical model describing the dynamic behaviour of the structures to seaway excitation.

Structure functions in the chiral bag model

International Nuclear Information System (INIS)

Sanjose, V.; Vento, V.; Centro Mixto CSIC/Valencia Univ., Valencia

1989-01-01

We calculate the structure functions of an isoscalar nuclear target for the deep inelastic scattering by leptons in an extended version of the chiral bag model which incorporates the qanti q structure of the pions in the cloud. Bjorken scaling and Regge behavior are satisfied. The model calculation reproduces the low-x behavior of the data but fails to explain the medium- to large-x behavior. Evolution of the quark structure functions seem inevitable to attempt a connection between the low-energy models and the high-energy behavior of quantum chromodynamics. (orig.)

Structure functions in the chiral bag model

Energy Technology Data Exchange (ETDEWEB)

Sanjose, V.; Vento, V.

1989-07-13

We calculate the structure functions of an isoscalar nuclear target for the deep inelastic scattering by leptons in an extended version of the chiral bag model which incorporates the qanti q structure of the pions in the cloud. Bjorken scaling and Regge behavior are satisfied. The model calculation reproduces the low-x behavior of the data but fails to explain the medium- to large-x behavior. Evolution of the quark structure functions seem inevitable to attempt a connection between the low-energy models and the high-energy behavior of quantum chromodynamics. (orig.).

Progress on nuclear modifications of structure functions

Directory of Open Access Journals (Sweden)

Kumano S.

2016-01-01

Full Text Available We report progress on nuclear structure functions, especially on their nuclear modifications and a new tensor structure function for the deuteron. To understand nuclear structure functions is an important step toward describing nuclei and QCD matters from low to high densities and from low to high energies in terms of fundamental quark and gluon degrees of freedom beyond conventional hadron and nuclear physics. It is also practically important for understanding new phenomena in high-energy heavy-ion collisions at RHIC and LHC. Furthermore, since systematic errors of current neutrinooscillation experiments are dominated by uncertainties of neutrino-nucleus interactions, such studies are valuable for finding new physics beyond current framework. Next, a new tensor-polarized structure function b1 is discussed for the deuteron. There was a measurement by HERMES; however, its data are inconsistent with the conventional convolution estimate based on the standard deuteron model with D-state admixture. This fact suggests that a new hadronic phenomenon should exist in the tensor-polarized deuteron at high energies, and it will be experimentally investigated at JLab from the end of 2010’s.

Kinetic-energy density functional: Atoms and shell structure

International Nuclear Information System (INIS)

Garcia-Gonzalez, P.; Alvarellos, J.E.; Chacon, E.

1996-01-01

We present a nonlocal kinetic-energy functional which includes an anisotropic average of the density through a symmetrization procedure. This functional allows a better description of the nonlocal effects of the electron system. The main consequence of the symmetrization is the appearance of a clear shell structure in the atomic density profiles, obtained after the minimization of the total energy. Although previous results with some of the nonlocal kinetic functionals have given incipient structures for heavy atoms, only our functional shows a clear shell structure for most of the atoms. The atomic total energies have a good agreement with the exact calculations. Discussion of the chemical potential and the first ionization potential in atoms is included. The functional is also extended to spin-polarized systems. copyright 1996 The American Physical Society

The contact activation proteins: a structure/function overview

NARCIS (Netherlands)

Meijers, J. C.; McMullen, B. A.; Bouma, B. N.

1992-01-01

In recent years, extensive knowledge has been obtained on the structure/function relationships of blood coagulation proteins. In this overview, we present recent developments on the structure/function relationships of the contact activation proteins: factor XII, high molecular weight kininogen,

Nucleon structure functions in noncommutative space-time

Energy Technology Data Exchange (ETDEWEB)

Rafiei, A.; Rezaei, Z.; Mirjalili, A. [Yazd University, Physics Department, Yazd (Iran, Islamic Republic of)

2017-05-15

In the context of noncommutative space-time we investigate the nucleon structure functions which play an important role in identifying the internal structure of nucleons. We use the corrected vertices and employ new vertices that appear in two approaches of noncommutativity and calculate the proton structure functions in terms of the noncommutative tensor θ{sub μν}. To check our results we plot the nucleon structure function (NSF), F{sub 2}(x), and compare it with experimental data and the results from the GRV, GJR and CT10 parametrization models. We show that with the new vertex that arises the noncommutativity correction will lead to a better consistency between theoretical results and experimental data for the NSF. This consistency will be better for small values of the Bjorken variable x. To indicate and confirm the validity of our calculations we also act conversely. We obtain a lower bound for the numerical values of Λ{sub NC} scale which correspond to recent reports. (orig.)

The Influence of (Dis)belief in Free Will on Immoral Behavior.

Science.gov (United States)

Caspar, Emilie A; Vuillaume, Laurène; Magalhães De Saldanha da Gama, Pedro A; Cleeremans, Axel

2017-01-01

One of the hallmarks of human existence is that we all hold beliefs that determine how we act. Amongst such beliefs, the idea that we are endowed with free will appears to be linked to prosocial behaviors, probably by enhancing the feeling of responsibility of individuals over their own actions. However, such effects appear to be more complex that one might have initially thought. Here, we aimed at exploring how induced disbeliefs in free will impact the sense of agency over the consequences of one's own actions in a paradigm that engages morality. To do so, we asked participants to choose to inflict or to refrain from inflicting an electric choc to another participant in exchange of a small financial benefit. Our results show that participants who were primed with a text defending neural determinism - the idea that humans are a mere bunch of neurons guided by their biology - administered fewer shocks and were less vindictive toward the other participant. Importantly, this finding only held for female participants. These results show the complex interaction between gender, (dis)beliefs in free will and moral behavior.

Solving crystal structures with the symmetry minimum function

International Nuclear Information System (INIS)

Estermann, M.A.

1995-01-01

Unravelling the Patterson function (the auto-correlation function of the crystal structure) (A.L. Patterson, Phys. Rev. 46 (1934) 372) can be the only way of solving crystal structures from neutron and incomplete diffraction data (e.g. powder data) when direct methods for phase determination fail. The negative scattering lengths of certain isotopes and the systematic loss of information caused by incomplete diffraction data invalidate the underlying statistical assumptions made in direct methods. In contrast, the Patterson function depends solely on the quality of the available diffraction data. Simpson et al. (P.G. Simpson et al., Acta Crystallogr. 18 (1965) 169) showed that solving a crystal structure with a particular superposition of origin-shifted Patterson functions, the symmetry minimum function, is advantageous over using the Patterson function alone, for single-crystal X-ray data.This paper describes the extension of the Patterson superposition approach to neutron data and powder data by (a) actively using the negative regions in the Patterson map caused by negative scattering lengths and (b) using maximum entropy Patterson maps (W.I.F. David, Nature 346 (1990) 731). Furthermore, prior chemical knowledge such as bond lengths and angles from known fragments have been included. Two successful structure solutions of a known and a previously unknown structure (M. Hofmann, J. Solid State Chem., in press) illustrate the potential of this new development. ((orig.))

Dis-harmony in European natural gas market(s). Discussion of standards and definitions

Energy Technology Data Exchange (ETDEWEB)

Karasz, Michael [The Energy House GmbH, Muenchen (Germany); Pustisek, Andrej [Hochschule fuer Technik, Stuttgart (Germany); Drasdo, Peter

2013-06-15

The European Union attempts to harmonise the European natural gas market(s). In general, this is supported on national levels. Nevertheless, such harmonisation is not yet fully accomplished: neither for the rules nor for the quality specifications nor for the physical quantities and their units. Even if the current economic impact of such dis-harmony is negligible, i.e. that market participants for the time being do not have to bear additional costs caused by the lack of harmonisation, participants in the commodity market are exposed to contractual risks. Potentially, this might lead to reduced competition and reduced liquidity of each single and the European internal market for natural gas. However, as the costs for a potential harmonisation of European gas markets are estimated to be significant, the dilemma is evident and the 'political' solution of the 'harmonisation problem' will necessarily deviate from the traders' one. (orig.)

Small-x Resummation and HERA Structure Function Data

CERN Document Server

Altarelli, Guido; Forte, Stefano; Altarelli, Guido; Ball, Richard D.; Forte, Stefano

2001-01-01

We apply our systematic NLO small x resummation of singlet splitting functions to the scaling violations of structure functions and compare the results with data. We develop various theoretical tools which are needed in order to relate resummed parton distributions to measurable structure functions, and we present results from a variety of fits to HERA data for the structure functions F_2 and F_L using the resummation. The behaviour of the singlet splitting functions at small x and fixed Q^2 is effectively parametrized as x^{-lambda}. We find that, for lambda small or negative, the resummed description of scaling violations may be phenomenologically as good as or even better than the standard next-to-leading order treatment. However, the best fit gluon density and value of alpha_s can be significantly modified by the resummation.

Characterization of technical surfaces by structure function analysis

Science.gov (United States)

Kalms, Michael; Kreis, Thomas; Bergmann, Ralf B.

2018-03-01

The structure function is a tool for characterizing technical surfaces that exhibits a number of advantages over Fourierbased analysis methods. So it is optimally suited for analyzing the height distributions of surfaces measured by full-field non-contacting methods. The structure function is thus a useful method to extract global or local criteria like e. g. periodicities, waviness, lay, or roughness to analyze and evaluate technical surfaces. After the definition of line- and area-structure function and offering effective procedures for their calculation this paper presents examples using simulated and measured data of technical surfaces including aircraft parts.

Structure functions and parton distributions

International Nuclear Information System (INIS)

Martin, A.D.; Stirling, W.J.; Roberts, R.G.

1995-01-01

The MRS parton distribution analysis is described. The latest sets are shown to give an excellent description of a wide range of deep-inelastic and other hard scattering data. Two important theoretical issues-the behavior of the distributions at small x and the flavor structure of the quark sea-are discussed in detail. A comparison with the new structure function data from HERA is made, and the outlook for the future is discussed

An impedance function approach for soil-structure interaction analyses including structure-to-structure interaction effects

International Nuclear Information System (INIS)

Gantayat, A.; Kamil, H.

1981-01-01

The dynamic soil-structure and structure-to-structure interaction effects may be determined in one of the two ways: by modeling the entire soil-structure system by a finite-element model, or by using a frequency-dependent (or frequency-independent) impedance function approach. In seismic design of nuclear power plant structures, the normal practice is to use the first approach because of its simplicity and easy availability of computer codes to perform such analyses. However, in the finite-element approach, because of the size and cost restrictions, the three-dimensional behavior of the entire soil-structure system and the radiation damping in soil are only approximately included by using a two-dimensional finite-element mesh. In using the impedance function approach, the soil-structure analyses can be performed in four steps: (a) determination of the dynamic properties of the fixed base superstructure, (b) determination of foundation and structure impedance matrices and input motions, (c) evaluation of foundation motion, (d) analysis of the fixed base superstructure using computed foundation motion. (orig./RW)

Connectivity and functional profiling of abnormal brain structures in pedophilia.

Science.gov (United States)

Poeppl, Timm B; Eickhoff, Simon B; Fox, Peter T; Laird, Angela R; Rupprecht, Rainer; Langguth, Berthold; Bzdok, Danilo

2015-06-01

Despite its 0.5-1% lifetime prevalence in men and its general societal relevance, neuroimaging investigations in pedophilia are scarce. Preliminary findings indicate abnormal brain structure and function. However, no study has yet linked structural alterations in pedophiles to both connectional and functional properties of the aberrant hotspots. The relationship between morphological alterations and brain function in pedophilia as well as their contribution to its psychopathology thus remain unclear. First, we assessed bimodal connectivity of structurally altered candidate regions using meta-analytic connectivity modeling (MACM) and resting-state correlations employing openly accessible data. We compared the ensuing connectivity maps to the activation likelihood estimation (ALE) maps of a recent quantitative meta-analysis of brain activity during processing of sexual stimuli. Second, we functionally characterized the structurally altered regions employing meta-data of a large-scale neuroimaging database. Candidate regions were functionally connected to key areas for processing of sexual stimuli. Moreover, we found that the functional role of structurally altered brain regions in pedophilia relates to nonsexual emotional as well as neurocognitive and executive functions, previously reported to be impaired in pedophiles. Our results suggest that structural brain alterations affect neural networks for sexual processing by way of disrupted functional connectivity, which may entail abnormal sexual arousal patterns. The findings moreover indicate that structural alterations account for common affective and neurocognitive impairments in pedophilia. The present multimodal integration of brain structure and function analyses links sexual and nonsexual psychopathology in pedophilia. © 2015 Wiley Periodicals, Inc.

Selected Topics in Light Front Field Theory and Applications to the High Energy Phenomena

Science.gov (United States)

Kundu, Rajen

1999-10-01

In this thesis, we have presented some of the aspects of light-front (LF) field theory through their successful application in the Deep Inelastic Scattering (DIS). We have developed a LFQCD Hamiltonian description of the DIS structure functions starting from Bjorken-Johnson-Low limit of virtual forward Compton scattering amplitude and using LF current commutators. We worked in the LF gauge A^+=0 and used the old-fashioned LFQCD perturbation theory in our calculations. The importance of our work are summarized below. Our approach shares the intution of parton model and addresses directly the structure functions, which are experimental objects, instead of its moments as in OPE method. Moreover, it can potentially incorporate the non-perturbative contents of the structure functions as we have demonstrated by introducing a new factorization scheme. In the context of nucleonic helicity structure, the well known gauge fixed LF helicity operator is shown to provide consistent physical information and helps us defining new relevant structure functions. The anomalous dimensions relevant for the Q^2-evolution of such structure functions are calculated. Our study is important in establishing the equivalance of LF field theory and the usual equal-time one through perturbative calculations of the dressed parton structure functions reproducing the well known results. Also the importance of Gallilean boost symmetry in understanding the correctness of any higher order calculation using (x^+)-ordered LFQCD perturbation theory are emphasized.

Photon structure functions at small x in holographic QCD

International Nuclear Information System (INIS)

Watanabe, Akira; Li, Hsiang-nan

2015-01-01

We investigate the photon structure functions at small Bjorken variable x in the framework of the holographic QCD, assuming dominance of the Pomeron exchange. The quasi-real photon structure functions are expressed as convolution of the Brower–Polchinski–Strassler–Tan (BPST) Pomeron kernel and the known wave functions of the U(1) vector field in the five-dimensional AdS space, in which the involved parameters in the BPST kernel have been fixed in previous studies of the nucleon structure functions. The predicted photon structure functions, as confronted with data, provide a clean test of the BPST kernel. The agreement between theoretical predictions and data is demonstrated, which supports applications of holographic QCD to hadronic processes in the nonperturbative region. Our results are also consistent with those derived from the parton distribution functions of the photon proposed by Glück, Reya, and Schienbein, implying realization of the vector meson dominance in the present model setup.

Structure functions of hadrons in the QCD effective theory

International Nuclear Information System (INIS)

Shigetani, Takayuki

1996-01-01

We study the structure functions of hadrons with the low energy effective theory of QCD. We try to clarify a link between the low energy effective theory, where non-perturbative dynamics is essential, and the high energy deep inelastic scattering experiment. We calculate the leading twist matrix elements of the structure function at the low energy model scale within the effective theory. Calculated structure functions are evoluted to the high momentum scale with the help of the perturbative QCD, and compared with the experimental data. Through the comparison of the model calculations with the experiment, we discuss how the non-perturbative dynamics of the effective theory is reflected in the deep inelastic phenomena. We first evaluate the structure functions of the pseudoscalar mesons using the NJL model. The resulting structure functions show reasonable agreements with experiments. We study then the quark distribution functions of the nucleon using a covariant quark-diquark model. We calculate three leading twist distribution functions, spin-independent f 1 (x), longitudinal spin distribution g 1 (x), and chiral-odd transversity spin distribution h 1 (x). The results for f 1 (x) and g 1 (x) turn out to be consistent with available experiments because of the strong spin-0 diquark correlation. (author)

The logarithmic slope in diffractive DIS

International Nuclear Information System (INIS)

Gay Ducati, M.B.; Goncalves, V.P.; Machado, M.V.T.

2002-01-01

The logarithmic slope of diffractive structure function is a potential observable to separate the hard and soft contributions in diffraction, allowing to disentangle the QCD dynamics at small-x region. In this paper we extend our previous analyzes and calculate the diffractive logarithmic slope for three current approaches in the literature: (i) the Bartels-Wusthoff model, based on perturbative QCD, (ii) the CKMT model, based on Regge theory and (iii) the Golec-Biernat-Wusthoff model which assumes that the saturation phenomena is present in the HERA kinematic region. We analyze the transition region of small to large momentum transfer and verify that future experimental results on the diffractive logarithmic slope could discriminate between these approaches

Structure function measurements in the deep inelastic muon-nucleon scattering

International Nuclear Information System (INIS)

Peschel, H.

1990-03-01

Measurements of deep inelastic scattering events on a combined copper and deuterium target were performed by the European Muon Collaboration (EMC) using a muon beam at CERN's SPS with energies at 100 GeV and 280 GeV. The data are analysed and compared with a detailed Monte-Carlo simulation and allow the determination of structure functions from both targets. In the light of the present discrepancy between EMC's and BCDMS's structure functions, stringend cuts were applied to the data. The results confirm the EMC structure function measurements on unbound nucleons. The comparison between the copper structure function from this experiment and the NA2 iron structure function shows a trend to lower values at low x Bj . (orig.) [de

Structure functions of electroweak boson and leptons

International Nuclear Information System (INIS)

Slominski, W.; Szwed, J.

1996-01-01

The QCD structure of the electroweak bosons is reviewed and the lepton structure function is defined and calculated. The leading order splitting functions of electron into quarks are extracted, showing an important contribution from γ-Z interference. Leading logarithmic QCD evolution equations are constructed and solved in the asymptotic region where log 2 behavior of the Parton densities is observed. Possible applications with clear manifestation of ''resolved'' photon and weak bosons are discussed. 8 refs., 3 figs

Boson structure functions from inelastic electron scattering

International Nuclear Information System (INIS)

De Jager, C.W.

1986-01-01

The even /sup 104-110/Pd isotopes and /sup 196/Pt have been investigated at NIKHEF-K by high-resolution inelastic electron scattering. A new IBA-2 calculation has been performed for the Pd isotopes, in which the ratio of the proton and neutron coupling constants is taken from pion scattering. One set of boson structure functions sufficed for the description of the first and second E2-excitations in all Pd isotopes. The data showed no sensitivity for different structure functions for proton and neutron bosons. A preliminary analysis of a number of negative parity states (3/sup -/,5/sup -/ and 7/sup -/), observed in /sup 196/Pt, was performed through the introduction of an f-boson. The first E4-excitation in the palladium isotopes can be reasonably described with a β-structure function, but all other E4-excitations require the introduction of g-boson admixtures

2004 Structural, Function and Evolutionary Genomics

Energy Technology Data Exchange (ETDEWEB)

Douglas L. Brutlag Nancy Ryan Gray

2005-03-23

This Gordon conference will cover the areas of structural, functional and evolutionary genomics. It will take a systematic approach to genomics, examining the evolution of proteins, protein functional sites, protein-protein interactions, regulatory networks, and metabolic networks. Emphasis will be placed on what we can learn from comparative genomics and entire genomes and proteomes.

Structure-Function Network Mapping and Its Assessment via Persistent Homology

Science.gov (United States)

2017-01-01

Understanding the relationship between brain structure and function is a fundamental problem in network neuroscience. This work deals with the general method of structure-function mapping at the whole-brain level. We formulate the problem as a topological mapping of structure-function connectivity via matrix function, and find a stable solution by exploiting a regularization procedure to cope with large matrices. We introduce a novel measure of network similarity based on persistent homology for assessing the quality of the network mapping, which enables a detailed comparison of network topological changes across all possible thresholds, rather than just at a single, arbitrary threshold that may not be optimal. We demonstrate that our approach can uncover the direct and indirect structural paths for predicting functional connectivity, and our network similarity measure outperforms other currently available methods. We systematically validate our approach with (1) a comparison of regularized vs. non-regularized procedures, (2) a null model of the degree-preserving random rewired structural matrix, (3) different network types (binary vs. weighted matrices), and (4) different brain parcellation schemes (low vs. high resolutions). Finally, we evaluate the scalability of our method with relatively large matrices (2514x2514) of structural and functional connectivity obtained from 12 healthy human subjects measured non-invasively while at rest. Our results reveal a nonlinear structure-function relationship, suggesting that the resting-state functional connectivity depends on direct structural connections, as well as relatively parsimonious indirect connections via polysynaptic pathways. PMID:28046127

The Energy Industry Profile of ISO/DIS 19115-1: Facilitating Discovery and Evaluation of, and Access to Distributed Information Resources

Science.gov (United States)

Hills, S. J.; Richard, S. M.; Doniger, A.; Danko, D. M.; Derenthal, L.; Energistics Metadata Work Group

2011-12-01

A diverse group of organizations representative of the international community involved in disciplines relevant to the upstream petroleum industry, - energy companies, - suppliers and publishers of information to the energy industry, - vendors of software applications used by the industry, - partner government and academic organizations, has engaged in the Energy Industry Metadata Standards Initiative. This Initiative envisions the use of standard metadata within the community to enable significant improvements in the efficiency with which users discover, evaluate, and access distributed information resources. The metadata standard needed to realize this vision is the initiative's primary deliverable. In addition to developing the metadata standard, the initiative is promoting its adoption to accelerate realization of the vision, and publishing metadata exemplars conformant with the standard. Implementation of the standard by community members, in the form of published metadata which document the information resources each organization manages, will allow use of tools requiring consistent metadata for efficient discovery and evaluation of, and access to, information resources. While metadata are expected to be widely accessible, access to associated information resources may be more constrained. The initiative is being conducting by Energistics' Metadata Work Group, in collaboration with the USGIN Project. Energistics is a global standards group in the oil and natural gas industry. The Work Group determined early in the initiative, based on input solicited from 40+ organizations and on an assessment of existing metadata standards, to develop the target metadata standard as a profile of a revised version of ISO 19115, formally the "Energy Industry Profile of ISO/DIS 19115-1 v1.0" (EIP). The Work Group is participating on the ISO/TC 211 project team responsible for the revision of ISO 19115, now ready for "Draft International Standard" (DIS) status. With ISO 19115 an

Structure functions of nucleons and nuclei

Energy Technology Data Exchange (ETDEWEB)

Bentz, Wolfgang; Ito, Takuya [Department of Physics, Tokai University, Kanagawa (Japan); Cloet, Ian [Department of Physics, University of Washington, Seattle (United States); Thomas, Anthony [Jefferson Lab., Newport News, VA (United States); Yazaki, Koichi [RIKEN, Wako-shi, Saitama (Japan)

2009-07-01

We use an effective chiral quark theory to calculate the quark distributions and structure functions of nucleons and nuclei. The description of the single nucleon is based on the Faddeev framework, and nuclear systems are described in the mean field approximation. Particular amphasis is put on the prediction of the polarized EMC effect in nuclei, and on applications to deep inelastic neutrino-nucleus scattering. Concerning the polarized EMC effect, we discuss the quenching of the quark spin sum in nuclei and its implications for the spin dependent nuclear structure functions, and present results for several nuclei where an experimental observation is feasible. Concerning the case of deep inelastic neutrino-nucleus scattering, we estimate the effect of medium modifications of the quark distribution functions on the measured cross sections, and discuss an interesting resolution of the so called NuTeV anomaly. Finally, we discuss extensions of our model to describe fragmentation functions for semi-inclusive processes. The connection between our effective quark model description and the jet model of Field and Feynman is discussed.

Small-x resummation from HELL

Energy Technology Data Exchange (ETDEWEB)

Bonvini, Marco [University of Oxford, Rudolf Peierls Centre for Theoretical Physics, Oxford, England (United Kingdom); Marzani, Simone [University at Buffalo, The State University of New York, Buffalo, NY (United States); Peraro, Tiziano [The University of Edinburgh, Higgs Centre for Theoretical Physics, School of Physics and Astronomy, Edinburgh, Scotland (United Kingdom)

2016-11-15

Small-x logarithmic enhancements arising from high-energy gluon emissions affect both the evolution of collinearly-factorized parton densities and partonic coefficient functions. With the higher collider energy reached by the LHC, the prospect of a future high-energy collider, and the recent deep-inelastic scattering (DIS) results at small-x from HERA, providing phenomenological tools for performing small-x resummation has become of great relevance. In this paper we discuss a framework to perform small-x resummation for both parton evolution and partonic coefficient functions and we describe its implementation in a computer code named High-Energy Large Logarithms (HELL). We present resummed and matched results for the DGLAP splitting functions and, as a proof of principle, for the massless structure functions in DIS. Furthermore, we discuss the uncertainty from subleading terms on our results. (orig.)

Generalized threshold resummation for semi-inclusive e+e- annihilation

International Nuclear Information System (INIS)

Lo Presti, N.A.; Vogt, A.

2012-02-01

Recently methods have been developed to extend the resummation of large-x double logarithms in inclusive deep-inelastic scattering (DIS) to terms not addressed by the soft-gluon exponentiation. Here we briefly outline our approach based on fixed-order results, the general large-x structure in dimensional regularization and the all-order factorization of mass singularities, which is directly applicable also to semi-inclusive e + e - annihilation (SIA). We then present some main results for the corresponding timelike splitting functions and transverse and longitudinal fragmentation functions. The close relation between DIS and SIA facilitates the determination of additional third-order results for the latter function which is fully known only at the next-to-leading order. Therefore all above quantities can be resummed at next-to-next-to-leading logarithmic accuracy. (orig.)

Animal Structures and Functions, Science (Experimental): 5314.13.

Science.gov (United States)

Silver, Barbara A.

This unit of instruction was designed to introduce the student to the relationship between structure and function in the animal kingdom, with emphasis given to: (1) the evolution of physiological systems in the major animal phyla, (2) the complementarity of structure and function, and (3) the concept of homeostasis. The booklet lists the relevant…

Histomorphological differentiation of non-erosive reflux disease and functional heartburn in patients with PPI-refractory heartburn.

Science.gov (United States)

Kandulski, A; Jechorek, D; Caro, C; Weigt, J; Wex, T; Mönkemüller, K; Malfertheiner, P

2013-09-01

Proton pump inhibitor (PPI)-refractory heartburn may be due to persistent gastro-oesophageal reflux, oesophageal hypersensitivity or functional heartburn (FH). The differentiation between non-erosive reflux disease (NERD) and FH may be very difficult. However, this differentiation is important for appropriate therapeutic management. Dilated intercellular spaces (DIS), papillary elongation (PE) and basal cell hyperplasia (BCH) can be all assessed by light microscopy. Whether these mucosal abnormalities allow the differentiation of NERD from FH in PPI-refractory patients is uncertain. To assess histopathological findings by light microscopy in patients with refractory heartburn to differentiate NERD from FH. Sixty-two patients with PPI-refractory symptoms underwent EGD and MII-pH after pausing PPI medication for 2 weeks before investigation. Twenty-five subjects without upper gastrointestinal symptoms were included as controls. Symptom assessment was based on the reflux disease questionnaire (RDQ). Biopsies were taken 3-5 cm above the gastro-oesophageal junction. DIS, PE, BCH and infiltration of immune cells were evaluated and a sum score was calculated. Based on endoscopy and MII-pH, GERD was diagnosed in 43 patients (NERD: 20; ERD: 23) and FH in 19 patients. There was no difference in symptoms between the groups. Each individual histopathological item was different between the groups (P < 0.0001). Between NERD and FH, the most significant difference was found for DIS and the histopathological sum score (P < 0.001). These findings suggest that oesophageal biopsies are useful to differentiate NERD from FH. Increased DIS and a histological sum score are the most significant histopathological abnormalities in NERD as compared with FH. © 2013 John Wiley & Sons Ltd.

Ontogenetic functional diversity: size structure of a keystone predator drives functioning of a complex ecosystem.

Science.gov (United States)

Rudolf, Volker H W; Rasmussen, Nick L

2013-05-01

A central challenge in community ecology is to understand the connection between biodiversity and the functioning of ecosystems. While traditional approaches have largely focused on species-level diversity, increasing evidence indicates that there exists substantial ecological diversity among individuals within species. By far, the largest source of this intraspecific diversity stems from variation among individuals in ontogenetic stage and size. Although such ontogenetic shifts are ubiquitous in natural communities, whether and how they scale up to influence the structure and functioning of complex ecosystems is largely unknown. Here we take an experimental approach to examine the consequences of ontogenetic niche shifts for the structure of communities and ecosystem processes. In particular we experimentally manipulated the stage structure in a keystone predator, larvae of the dragonfly Anax junius, in complex experimental pond communities to test whether changes in the population stage or size structure of a keystone species scale up to alter community structure and ecosystem processes, and how functional differences scale with relative differences in size among stages. We found that the functional role of A. junius was stage-specific. Altering what stages were present in a pond led to concurrent changes in community structure, primary producer biomass (periphyton and phytoplankton), and ultimately altered ecosystem processes (respiration and net primary productivity), indicating a strong, but stage-specific, trophic cascade. Interestingly, the stage-specific effects did not simply scale with size or biomass of the predator, but instead indicated clear ontogenetic niche shifts in ecological interactions. Thus, functional differences among stages within a keystone species scaled up to alter the functioning of entire ecosystems. Therefore, our results indicate that the classical approach of assuming an average functional role of a species can be misleading because

The polarised valence quark distribution from semi-inclusive DIS

Czech Academy of Sciences Publication Activity Database

Alekseev, M.; Alexakhin, V. Yu.; Alexandrov, Yu.; Alexeev, G. D.; Amoroso, A.; Arbuzov, A.; Badelek, B.; Balestra, F.; Ball, J.; Barth, J.; Baum, G.; Bedfer, Y.; Bernet, C.; Bertini, R.; Bettinelli, M.; Birsa, R.; Bisplinghoff, J.; Bordalo, P.; Bradamante, F.; Bravar, A.; Bressan, A.; Brona, G.; Burtin, E.; Bussa, M.; Chapiro, A.; Chiosso, M.; Cicuttin, A.; Colantoni, M.; Costa, S.; Crespo, M.; Dalla Torre, S.; Dafni, T.; Das, S.; Dasgupta, S. S.; De Masi, R.; Dedek, N.; Denisov, O.; Dhara, L.; Diaz, V.; Dinkelbach, A.; Donskov, S.; Dorofeev, V.; Doshita, N.; Duic, V.; Dünnweber, W.; Eversheim, P.; Eyrich, W.; Faessler, M.; Falaleev, V.; Ferrero, A.; Ferrero, L.; Finger, M.; Finger jr., M.; Fischer, H.; Franco, C.; Franz, J.; Friedrich, J.; Frolov, V.; Garfagnini, R.; Gautheron, F.; Gavrichtchouk, O.; Gazda, R.; Gerassimov, S.; Geyer, R.; Giorgi, M.; Gobbo, B.; Goertz, S.; Gorin, A.; Grabmüller, S.; Grajek, O.; Grasso, A.; Grube, B.; Gushterski, R.; Guskov, A.; Haas, F.; Hannappel, J.; von Harrach, D.; Hasegawa, T.; Heckmann, J.; Hedicke, S.; Heinsius, F.; Hermann, R.; Hess, C.; Hinterberger, F.; von Hodenberg, M.; Horikawa, N.; Horikawa, S.; d'Hose, N.; Ilgner, C.; Ioukaev, A.; Ishimoto, S.; Ivanov, O.; Ivanshin, Yu.; Iwata, T.; Jahn, R.; Janata, A.; Jasinski, P.; Joosten, R.; Jouravlev, N. I.; Kabuss, E.; Kang, D.; Ketzer, B.; Khaustov, G.; Khokhlov, Y.; Kisselev, Y.; Klein, F.; Klimaszewski, K.; Koblitz, S.; Koivuniemi, J.; Kolosov, V.; Komissarov, E.; Kondo, K.; Königsmann, K.; Konorov, I.; Konstantinov, V.; Korentchenko, A.; Korzenev, A.; Kotzinian, A.; Koutchinski, N.; Kouznetsov, O.; Kral, A.; Kravchuk, N.; Kroumchtein, Z.; Kuhn, R.; Kunne, F.; Kurek, K.; Ladygin, M.; Lamanna, M.; Le Goff, J.; Lednev, A.; Lehmann, A.; Levorato, S.; Lichtenstadt, J.; Liska, T.; Ludwig, I.; Maggiora, A.; Maggiora, M.; Magnon, A.; Mallot, G.; Mann, A.; Marchand, C.; Marroncle, J.; Martin, A.; Marzec, J.; Massmann, F.; Matsuda, T.; Maximov, A.; Meyer, W.; Mielech, A.; Mikhailov, Y.; Moinester, M.; Mutter, A.; Nagaytsev, A.; Nagel, T.; Nähle, O.; Nassalski, J.; Neliba, S.; Nerling, F.; Neubert, S.; Neyret, D.; Nikolaenko, V.; Nikolaev, K.; Olshevsky, A.; Ostrick, M.; Padee, A.; Pagano, P.; Panebianco, S.; Panknin, R.; Panzieri, D.; Paul, S.; Pawlukiewicz-Kaminska, B.; Peshekhonov, D.; Peshekhonov, V.; Piragino, G.; Platchkov, S.; Pochodzalla, J.; Polak, J.; Polyakov, V.; Pretz, J.; Procureur, S.; Quintans, C.; Rajotte, J.; Ramos, S.; Rapatsky, V.; Reicherz, G.; Reggiani, D.; Richter, A.; Robinet, F.; Rocco, E.; Rondio, E.; Rozhdestvensky, A.; Ryabchikov, D.; Samoylenko, V.; Sandacz, A.; Santos, H.; Sapozhnikov, M.; Sarkar, S.; Savin, I.; Schiavon, P.; Schill, C.; Schmitt, L.; Schönmeier, P.; Schröder, W.; Shevchenko, O.; Siebert, H.; Silva, L.; Sinha, L.; Sissakian, A.; Slunecka, M.; Smirnov, G.; Sosio, S.; Sozzi, F.; Srnka, Aleš; Stinzing, F.; Stolarski, M.; Sugonyaev, V.; Sulc, M.; Sulej, R.; Tchalishev, V.; Tessaro, S.; Tessarotto, F.; Teufel, A.; Tkatchev, L.; Venugopal, G.; Virius, M.; Vlassov, N.; Vossen, A.; Webb, R.; Weise, E.; Weitzel, Q.; Windmolders, R.; Wirth, S.; Wislicki, W.; Wollny, H.; Zaremba, K.; Zavertyaev, M.; Zemlyanichkina, E.; Zhao, J.; Ziegler, R.; Zvyagin, A.

2008-01-01

Roč. 660, č. 5 (2008), s. 458-465 ISSN 0370-2693 R&D Projects: GA MŠk ME 492 Institutional research plan: CEZ:AV0Z20650511 Keywords : deep inelastic scattering * structure functions Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 4.034, year: 2008

Analysis of Lamellar Structures with Application of Generalized Functions

Directory of Open Access Journals (Sweden)

Kipiani Gela

2016-12-01

Full Text Available Theory of differential equations in respect of the functional area is based on the basic concepts on generalized functions and splines. There are some basic concepts related to the theory of generalized functions and their properties are considered in relation to the rod systems and lamellar structures. The application of generalized functions gives the possibility to effectively calculate step-variable stiffness lamellar structures. There are also widely applied structures, in that several in which a number of parallel load bearing layers are interconnected by discrete-elastic links. For analysis of system under study, such as design diagrams, there are applied discrete and discrete-continual models.

The behaviour of the Green function for the BFKL pomeron with running coupling

International Nuclear Information System (INIS)

Kowalski, H.; Lipatov, L.N.; Ross, D.A.

2015-08-01

We analyse here in LO the physical properties of the Green function solution for the BFKL equation. We show that the solution obeys the orthonormality conditions in the physical region and fulfills the completeness requirements. The unintegrated gluon density is shown to consists of a set of few poles with parameters which could be determined by comparison with the DIS data of high precision.

Vortex structure and characterization of quasiperiodic functions

International Nuclear Information System (INIS)

Dana, Itzhack; Chernov, Vladislav E

2002-01-01

Quasiperiodic functions (QPFs) are characterized by their full vortex structure in one unit cell. This characterization is much finer and more sensitive than the topological one given by the total vorticity per unit cell (the 'Chern index'). It is shown that QPFs with an arbitrarily prescribed vortex structure exist by constructing explicitly such a 'standard' QPF. Two QPFs with the same vortex structure are equivalent, in the sense that their ratio is a function which is strictly periodic, nonvanishing and at least continuous. A general QPF can then be approximately reconstructed from its vortex structure on the basis of the standard QPF and the equivalence concept. As another application of this concept, a simple method is proposed for calculating the quasiperiodic eigenvectors of periodic matrices. Possible applications to the quantum-chaos problem on a phase-space torus are briefly discussed

Unbiased Polarised Parton Distribution Functions and their Uncertainties

CERN Document Server

Nocera, Emanuele R.; Ridolfi, Giovanni; Rojo, Juan

2012-01-01

We present preliminary results on the determination of spin-dependent, or polarised, Parton Distribution Functions (PDFs) from all relevant inclusive polarised DIS data. The analysis is performed within the NNPDF approach, which provides a faithful and statistically sound representation of PDFs and their uncertainties. We describe how the NNPDF methodology has been extended to the polarised case, and compare our results with other recent polarised parton sets. We show that polarised PDF uncertainties can be sizeably underestimated in standard determinations, most notably for the gluon.

Spin-dependent parton distributions and structure functions

International Nuclear Information System (INIS)

Bentz, W.; Ito, T.; Cloet, I.C.; Thomas, A.W.; Yazaki, K.

2008-01-01

Nuclear parton distributions and structure functions are determined in an effective chiral quark theory. We also discuss an extension of our model to fragmentation functions. Presented at the 20th Few-Body Conference, Pisa, Italy, 10-14 September 2007. (author)

Deep inelastic structure functions in the chiral bag model

International Nuclear Information System (INIS)

Sanjose, V.; Vento, V.; Centro Mixto CSIC/Valencia Univ., Valencia

1989-01-01

We calculate the structure functions for deep inelastic scattering on baryons in the cavity approximation to the chiral bag model. The behavior of these structure functions is analyzed in the Bjorken limit. We conclude that scaling is satisfied, but not Regge behavior. A trivial extension as a parton model can be achieved by introducing the structure function for the pion in a convolution picture. In this extended version of the model not only scaling but also Regge behavior is satisfied. Conclusions are drawn from the comparison of our results with experimental data. (orig.)

Deep inelastic structure functions in the chiral bag model

Energy Technology Data Exchange (ETDEWEB)

Sanjose, V. (Valencia Univ. (Spain). Dept. de Didactica de las Ciencias Experimentales); Vento, V. (Valencia Univ. (Spain). Dept. de Fisica Teorica; Centro Mixto CSIC/Valencia Univ., Valencia (Spain). Inst. de Fisica Corpuscular)

1989-10-02

We calculate the structure functions for deep inelastic scattering on baryons in the cavity approximation to the chiral bag model. The behavior of these structure functions is analyzed in the Bjorken limit. We conclude that scaling is satisfied, but not Regge behavior. A trivial extension as a parton model can be achieved by introducing the structure function for the pion in a convolution picture. In this extended version of the model not only scaling but also Regge behavior is satisfied. Conclusions are drawn from the comparison of our results with experimental data. (orig.).

Thermal (dis)comfort experienced from physiological movements across indoor, transitional and outdoor spaces in Singapore: A pilot study

Science.gov (United States)

Li Heng, Su; Chow, Winston

2017-04-01

Human thermal comfort research is important as climate discomfort can adversely affect both health and work productivity in cities; however, such biometeorological work in low-latitude urban areas is still relatively unstudied hitherto. In the tropical metropolis of Singapore, a suite of policies have been implemented aimed at improving environmental sustainability via increasing car-free commutes and pedestrian movement during work/school journeys, with the consequence that individuals will likely have increased personal exposure through a variety of spaces (and climates) during typical daily activities. As such, research into exploring the thermal (dis)comfort experienced during pedestrian movements across these indoor, outdoor and transitional (semi-outdoor) spaces would yield interesting applied biometerological insights. This pilot study thus investigates how pedestrian thermal comfort varies spatially across a university campus, and how the physical intensity of pedestrian travel affects thermal comfort across these spaces. Over a 10-week period, we profiled six students for both their objective and subjective pedestrian thermal comfort during traverses across different spaces. Data were obtained through use of (a.) of a heat stress sensor, (b.) a fitness tracker, and (b.) a questionnaire survey to record traverse measurements of the microclimate, their physiological data, and their perceived microclimate comfort respectively. Measured climate and physiological data were used to derive commonly-used thermal comfort indices like wet-bulb globe temperature (WBGT) and physiological equivalent temperature (PET). Further, interviews were conducted with all six subjects at the end of the fieldwork period to ascertain details on individual acclimatization behavior and adaptation strategies. The results indicate that (a.) more than 50% of the microclimatic conditions within each indoor, semi-outdoor, and outdoor space exceeded heat stress thresholds of both PET and

A Measurement of Nuclear Structure Functions in the Large $X$ Large $Q^{2}$ Kinematic Region in Neutrino Deep Inelastic Scattering

Energy Technology Data Exchange (ETDEWEB)

Vakili, Masoud [Cincinnati U.

1997-01-01

Data from the CCFR E770 Neutrino Deep Inelastic Scatter- ing (DIS) experiment at Fermilab contain large Bjorken x, high $Q^2$ events. A comparison of the data with a model, based on no nuclear effects at large $x$, shows an excess of events in the data. Addition of Fermi gas motion of the nucleons in the nucleus to the model does not explain the model's deficit. Adding higher momentum tail due to the formation of "quasi-deuterons" makes the agreement better. Certain models based on "multi- quark clusters" and "few-nucleon correlations" predict an exponentially falling behavior for $F_2$ as $F_2 \\sim e^{s(x -x_0)}$ at large $x$. We measure a $s$ = 8.3 $\\pm$ 0.8 for the best fit to our data. This corresponds to a value of $F_2$($x = 1, Q^2 > 50) \\approx 2$ x $10^{-3}$ in neutrino DIS. These values agree with results from theoretical models and the $SLAC$ $E133$ experiment but seem to be different from the result of the BCDMS experiment

A structural self-regulation of functioning macromolecules

International Nuclear Information System (INIS)

Khristoforov, L.N.

1998-01-01

An approach to describing the functional structural changes of macromolecules processing the flows of low-mass agents is formulated. The latter appear as a source of a discrete noise whose defining parameters depend on structural variables. We derive a forward evolution equation and then, by adiabatic elimination, effective Fokker-Planck's equation for the structural modes. Within the dichotomous case, we discuss noise-induced nonequilibrium phase transitions reflecting the regulatory role of the structural subsystem

Soil-Borne Microbial Functional Structure across Different Land Uses

NARCIS (Netherlands)

Kuramae, E.E.; Zhou, J.Z.; Kowalchuk, G.A.; van Veen, J.A..

2014-01-01

Land use change alters the structure and composition of microbial communities. However, the links between environmental factors and microbial functions are not well understood. Here we interrogated the functional structure of soil microbial communities across different land uses. In a multivariate

Soil-borne microbial functional structure across different land uses

NARCIS (Netherlands)

Kuramae, Eiko E; Zhou, Jizhong Z; Kowalchuk, George A; van Veen, Johannes A

2014-01-01

Land use change alters the structure and composition of microbial communities. However, the links between environmental factors and microbial functions are not well understood. Here we interrogated the functional structure of soil microbial communities across different land uses. In a multivariate

Pair distribution function and structure factor of spherical particles

International Nuclear Information System (INIS)

Howell, Rafael C.; Proffen, Thomas; Conradson, Steven D.

2006-01-01

The availability of neutron spallation-source instruments that provide total scattering powder diffraction has led to an increased application of real-space structure analysis using the pair distribution function. Currently, the analytical treatment of finite size effects within pair distribution refinement procedures is limited. To that end, an envelope function is derived which transforms the pair distribution function of an infinite solid into that of a spherical particle with the same crystal structure. Distributions of particle sizes are then considered, and the associated envelope function is used to predict the particle size distribution of an experimental sample of gold nanoparticles from its pair distribution function alone. Finally, complementing the wealth of existing diffraction analysis, the peak broadening for the structure factor of spherical particles, expressed as a convolution derived from the envelope functions, is calculated exactly for all particle size distributions considered, and peak maxima, offsets, and asymmetries are discussed

Impact of CLAS and COMPASS data on polarized parton densities and higher twist

International Nuclear Information System (INIS)

Leader, Elliot; Sidorov, Aleksander V.; Stamenov, Dimiter B.

2007-01-01

We have reanalyzed the world data on inclusive polarized deep inelastic scattering (DIS) including the very precise CLAS proton and deuteron data, as well as the latest COMPASS data on the asymmetry A 1 d , and have studied the impact of these data on polarized parton densities and higher twist effects. We demonstrate that the low Q 2 CLAS data improve essentially our knowledge of higher twist corrections to the spin structure function g 1 , while the large Q 2 COMPASS data influence mainly the strange quark density. In our new analysis we find that a negative polarized gluon density, or one that changes sign as a function of x, cannot be ruled out on the basis of the present DIS data

Molecular structures and functional relationships in clostridial neurotoxins.

Science.gov (United States)

Swaminathan, Subramanyam

2011-12-01

The seven serotypes of Clostridium botulinum neurotoxins (A-G) are the deadliest poison known to humans. They share significant sequence homology and hence possess similar structure-function relationships. Botulinum neurotoxins (BoNT) act via a four-step mechanism, viz., binding and internalization to neuronal cells, translocation of the catalytic domain into the cytosol and finally cleavage of one of the three soluble N-ethylmaleimide-sensitive factor attachment protein receptors (SNARE) causing blockage of neurotransmitter release leading to flaccid paralysis. Crystal structures of three holotoxins, BoNT/A, B and E, are available to date. Although the individual domains are remarkably similar, their domain organization is different. These structures have helped in correlating the structural and functional domains. This has led to the determination of structures of individual domains and combinations of them. Crystal structures of catalytic domains of all serotypes and several binding domains are now available. The catalytic domains are zinc endopeptidases and share significant sequence and structural homology. The active site architecture and the catalytic mechanism are similar although the binding mode of individual substrates may be different, dictating substrate specificity and peptide cleavage selectivity. Crystal structures of catalytic domains with substrate peptides provide clues to specificity and selectivity unique to BoNTs. Crystal structures of the receptor domain in complex with ganglioside or the protein receptor have provided information about the binding of botulinum neurotoxin to the neuronal cell. An overview of the structure-function relationship correlating the 3D structures with biochemical and biophysical data and how they can be used for structure-based drug discovery is presented here. Journal compilation © 2011 FEBS. No claim to original US government works.

Structure functions at low x

International Nuclear Information System (INIS)

Roeck, A.De.

2000-01-01

Deep recent data and phenomenology on low-x structure functions are discussed inelastic scattering. We will be interested primordially in the regions Q 2 → 0 i.e. the transition from γp to, and x → 10 -4 - 10 -6 i.e. the region of high parton densities

Function-specific and Enhanced Brain Structural Connectivity Mapping via Joint Modeling of Diffusion and Functional MRI.

Science.gov (United States)

Chu, Shu-Hsien; Parhi, Keshab K; Lenglet, Christophe

2018-03-16

A joint structural-functional brain network model is presented, which enables the discovery of function-specific brain circuits, and recovers structural connections that are under-estimated by diffusion MRI (dMRI). Incorporating information from functional MRI (fMRI) into diffusion MRI to estimate brain circuits is a challenging task. Usually, seed regions for tractography are selected from fMRI activation maps to extract the white matter pathways of interest. The proposed method jointly analyzes whole brain dMRI and fMRI data, allowing the estimation of complete function-specific structural networks instead of interactively investigating the connectivity of individual cortical/sub-cortical areas. Additionally, tractography techniques are prone to limitations, which can result in erroneous pathways. The proposed framework explicitly models the interactions between structural and functional connectivity measures thereby improving anatomical circuit estimation. Results on Human Connectome Project (HCP) data demonstrate the benefits of the approach by successfully identifying function-specific anatomical circuits, such as the language and resting-state networks. In contrast to correlation-based or independent component analysis (ICA) functional connectivity mapping, detailed anatomical connectivity patterns are revealed for each functional module. Results on a phantom (Fibercup) also indicate improvements in structural connectivity mapping by rejecting false-positive connections with insufficient support from fMRI, and enhancing under-estimated connectivity with strong functional correlation.

The analytic structure of the anomalous dimension of the four-gluon operator in deep inelastic scattering

International Nuclear Information System (INIS)

Bartels, J.

1993-12-01

In the double logarithmic approximation of perturbative QCD we show that the anomalous dimension of the four-gluon operator in DIS has a rich analytic structure. In addition to a pole on the physical sheet we find singularities on second and other nonphysical sheets. We attempt to interprete these singularities as bound states and resonances. (orig.)

On the Drell-Levy-Yan relation to O(α2s)

International Nuclear Information System (INIS)

Bluemlein, J.; Ravindran, V.; Neerven, W.L. van; Rijksuniversiteit Leiden

2000-03-01

We study the validity of a relation by Drell, Levy and Yan (DLY) connecting the deep inelastic structure (DIS) functions and the single-particle fragmentation functions in e + e - annihilation which are defined in the spacelike (q 2 2 > 0) regions respectively. Here q denotes the momentum of the virtual photon exchanged in the deep inelastic scattering process or the annihilation process. An extension of the DLY-relation, which originally was only derived in the scaling parton model, to all orders in QCD leads to a connection between the two evolution kernels determining the q 2 -dependence of the DIS structure functions and the fragmentation functions respectively. In relation to this we derive the transformation relations between the space-and time-like splitting functions up to next-to-leading order (NLO) and the coefficient functions up to NNLO both for unpolarized and polarized scattering. It is shown that the evolution kernels describing the combined singlet evolution for the structure functions F 2 (x, Q 2 ), F L (x, Q 2 ) where Q 2 = vertical stroke q 2 vertical stroke or F 2 (x, Q 2 ), ∂F 2 (x,Q 2 )/∂ln(Q 2 ) and the corresponding fragmentation functions satisfy the DLY relation up to next-to-leading order. We also comment on a relation proposed by Gribov and Lipatov. (orig.)

Functional Annotation of Ion Channel Structures by Molecular Simulation.

Science.gov (United States)

Trick, Jemma L; Chelvaniththilan, Sivapalan; Klesse, Gianni; Aryal, Prafulla; Wallace, E Jayne; Tucker, Stephen J; Sansom, Mark S P

2016-12-06

Ion channels play key roles in cell membranes, and recent advances are yielding an increasing number of structures. However, their functional relevance is often unclear and better tools are required for their functional annotation. In sub-nanometer pores such as ion channels, hydrophobic gating has been shown to promote dewetting to produce a functionally closed (i.e., non-conductive) state. Using the serotonin receptor (5-HT 3 R) structure as an example, we demonstrate the use of molecular dynamics to aid the functional annotation of channel structures via simulation of the behavior of water within the pore. Three increasingly complex simulation analyses are described: water equilibrium densities; single-ion free-energy profiles; and computational electrophysiology. All three approaches correctly predict the 5-HT 3 R crystal structure to represent a functionally closed (i.e., non-conductive) state. We also illustrate the application of water equilibrium density simulations to annotate different conformational states of a glycine receptor. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Studying Membrane Protein Structure and Function Using Nanodiscs

DEFF Research Database (Denmark)

Huda, Pie

The structure and dynamic of membrane proteins can provide valuable information about general functions, diseases and effects of various drugs. Studying membrane proteins are a challenge as an amphiphilic environment is necessary to stabilise the protein in a functionally and structurally relevant...... form. This is most typically achieved through the use of detergent based reconstitution systems. However, time and again such systems fail to provide a suitable environment causing aggregation and inactivation. Nanodiscs are self-assembled lipoproteins containing two membrane scaffold proteins...... and a lipid bilayer in defined nanometer size, which can act as a stabiliser for membrane proteins. This enables both functional and structural investigation of membrane proteins in a detergent free environment which is closer to the native situation. Understanding the self-assembly of nanodiscs is important...

Velocidad de crecimiento de grietas por corrosión bajo tensión en soldaduras disímiles

Directory of Open Access Journals (Sweden)

Fernández, María del Pilar

2000-02-01

Full Text Available Dissimilar welds, used to join different sections in light water reactors, are potentially susceptible to stress corrosion cracking (SCC in aqueous mediums characteristic of nuclear plants. However, the study of these welds has been limited to evaluating the weld material susceptibility in these mediums. Little scarce data are available on crack growth rates due, fundamentally, to inadequate testing techniques. In order to address this lack of information the crack growth rate at the interface of ferritic SA533B-1 alloy and alloy 1-82, in a dissimilar weld (SA533B-1/I-82/316L, was studied. Experiments were conducted in water at 288 °C, 8 ppm of O₂ and 1 μS/cm conductivity.

Las soldaduras disímiles, que son utilizadas para unir diferentes partes en los reactores de agua ligera, son potencialmente susceptibles de experimentar corrosión bajo tensión (SCC en los medios acuosos característicos de las plantas nucleares. Sin embargo, el estudio de estas soldaduras ha estado limitado a evaluar en dichos medios la susceptibilidad a SCC de los materiales que componen las mismas por separado, existiendo pocos datos de velocidad de crecimiento de grietas debido fundamentalmente a la falta de estandarización de este tipo de ensayos. En este trabajo se ha pretendido determinar la velocidad de crecimiento de grietas en la interfase formada por el acero ferrítico SA533B-1y la aleación I-82 dentro de la soldadura disímil compuesta por el acero SA533B-1/I-82/316L en unas condiciones de química del agua correspondientes a 8 ppm de O₂, una conductividad de 1 μS/cm y a una temperatura de 288 °C.

Significance tests for functional data with complex dependence structure.

Science.gov (United States)

Staicu, Ana-Maria; Lahiri, Soumen N; Carroll, Raymond J

2015-01-01

We propose an L 2 -norm based global testing procedure for the null hypothesis that multiple group mean functions are equal, for functional data with complex dependence structure. Specifically, we consider the setting of functional data with a multilevel structure of the form groups-clusters or subjects-units, where the unit-level profiles are spatially correlated within the cluster, and the cluster-level data are independent. Orthogonal series expansions are used to approximate the group mean functions and the test statistic is estimated using the basis coefficients. The asymptotic null distribution of the test statistic is developed, under mild regularity conditions. To our knowledge this is the first work that studies hypothesis testing, when data have such complex multilevel functional and spatial structure. Two small-sample alternatives, including a novel block bootstrap for functional data, are proposed, and their performance is examined in simulation studies. The paper concludes with an illustration of a motivating experiment.

Significance tests for functional data with complex dependence structure

KAUST Repository

Staicu, Ana-Maria

2015-01-01

We propose an L (2)-norm based global testing procedure for the null hypothesis that multiple group mean functions are equal, for functional data with complex dependence structure. Specifically, we consider the setting of functional data with a multilevel structure of the form groups-clusters or subjects-units, where the unit-level profiles are spatially correlated within the cluster, and the cluster-level data are independent. Orthogonal series expansions are used to approximate the group mean functions and the test statistic is estimated using the basis coefficients. The asymptotic null distribution of the test statistic is developed, under mild regularity conditions. To our knowledge this is the first work that studies hypothesis testing, when data have such complex multilevel functional and spatial structure. Two small-sample alternatives, including a novel block bootstrap for functional data, are proposed, and their performance is examined in simulation studies. The paper concludes with an illustration of a motivating experiment.

Many Activities, One Structure: Functional Plasticity of Ribozyme Folds

Directory of Open Access Journals (Sweden)

Matthew W.L. Lau

2016-11-01

Full Text Available Catalytic RNAs, or ribozymes, are involved in a number of essential biological processes, such as replication of RNA genomes and mobile genetic elements, RNA splicing, translation, and RNA degradation. The function of ribozymes requires the formation of active sites decorated with RNA functional groups within defined three-dimensional (3D structures. The genotype (sequence of RNAs ultimately determines what 3D structures they adopt (as a function of their environmental conditions. These 3D structures, in turn, give rise to biochemical activity, which can further elaborate them by catalytic rearrangements or association with other molecules. The fitness landscape of a non-periodic linear polymer, such as RNA, relates its primary structure to a phenotype. Two major challenges in the analysis of ribozymes is to map all possible genotypes to their corresponding catalytic activity (that is, to determine their fitness landscape experimentally, and to understand whether their genotypes and three-dimensional structures can support multiple different catalytic functions. Recently, the combined results of experiments that employ in vitro evolution methods, high-throughput sequencing and crystallographic structure determination have hinted at answers to these two questions: while the fitness landscape of ribozymes is rugged, meaning that their catalytic activity cannot be optimized by a smooth trajectory in sequence space, once an RNA achieves a stable three-dimensional fold, it can be endowed with distinctly different biochemical activities through small changes in genotype. This functional plasticity of highly structured RNAs may be particularly advantageous for the adaptation of organisms to drastic changes in selective pressure, or for the development of new biotechnological tools.

The photon structure function at large Q2

International Nuclear Information System (INIS)

Cordier, A.

1987-01-01

LEP II offers the unique opportunity to measure the photon structure function over a large Q 2 range up to ∼ 2000 GeV 2 . Two crucial predictions of QCD can be tested in this experiment: the linear rise in log Q 2 as a consequence of asymptotic freedom, and the large renormalization O(1) of the shape of the structure function due to gluon bremsstrahlung, unperturbed by higher-twist effects

Three-Pronged Assessment and Diagnosis of Personality Disorder and its Consequences: Personality Functioning, Pathological Traits, and Psychosocial Disability

Science.gov (United States)

Clark, Lee Anna; Ro, Eunyoe

2014-01-01

The alternative dimensional model of personality disorder (PD) in the Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition (DSM-5; American Psychiatric Association, 2013), Section III, has two main criteria: Impairment in personality functioning and one or more pathological personality traits. The former is defined as disturbances in self functioning (viz., identity, self-direction), and/or interpersonal functioning (viz., empathy, intimacy). Distinguishing personality functioning and traits is important conceptually, because simply having extreme traits is not necessarily pathological. However, adding personality functioning to PD diagnosis represents an empirical challenge, because the constructs overlap conceptually. Further, there is debate regarding whether diagnosis of mental disorder requires either distress or disability, concepts that also overlap with maladaptive-range personality traits and personality dysfunction. We investigated interrelations among these constructs using multiple self-report measures of each domain in a mixed community-patient sample (N = 402). We examined the structures of functioning (psychosocial disability and personality), and personality traits, first independently, then jointly. The disability/functioning measures yielded the three dimensions we have found previously (Ro & Clark, 2013). Trait measures had a hierarchical structure which, at the five-factor level, reflected neuroticism/negative affectivity (N/NA), (low) sociability, disinhibition, (dis)agreeableness, and rigid goal engagement. When all measures were co-factored, a hierarchical structure again emerged which, at the five-factor level, included (1) internalizing (N/NA and self-pathology vs. quality-of-life/satisfaction), (2) externalizing (social/interpersonal dysfunction, low sociability, and disagreeableness), (3) disinhibition, (4) poor basic functioning, and (5) rigid goal engagement. Results are discussed in terms of developing an integrated PD

The virtual photon structure functions and AdS/QCD correspondence

International Nuclear Information System (INIS)

Yoshida, Yutaka

2010-01-01

We study the virtual photons structure functions from gauge/string duality. If the Bjorken variable x is not small, supergravity approximation becomes good in dual string theory. We calculate the virtual photon structure functions at large 't Hooft coupling in a moderate x-region and determine x-behavior of the structure functions. We also show that the Callan-Gross relation F L =0 is satisfied to a good approximation in gravity calculation. (author)

Edge-functionalization of armchair graphene nanoribbons with pentagonal-hexagonal edge structures.

Science.gov (United States)

Ryou, Junga; Park, Jinwoo; Kim, Gunn; Hong, Suklyun

2017-06-21

Using density functional theory calculations, we have studied the edge-functionalization of armchair graphene nanoribbons (AGNRs) with pentagonal-hexagonal edge structures. While the AGNRs with pentagonal-hexagonal edge structures (labeled (5,6)-AGNRs) are metallic, the edge-functionalized (5,6)-AGNRs with substitutional atoms opens a band gap. We find that the band structures of edge-functionalized (5,6)-N-AGNRs by substitution resemble those of defect-free (N-1)-AGNR at the Γ point, whereas those at the X point show the original ones of the defect-free N-AGNR. The overall electronic structures of edge-functionalized (5,6)-AGNRs depend on the number of electrons, supplied by substitutional atoms, at the edges of functionalized (5,6)-AGNRs.

Methodology of radionuclides dis incorporation in people related to nuclear and radiological accidents

International Nuclear Information System (INIS)

Jimenez F, E. A.

2014-01-01

allow obtain a better result of the dis incorporation of the radioactive material. In this work, the attention is focused on the identification, classification and selection of the methodologies to accelerate the dis incorporation of radionuclides in people related to nuclear a radiological accidents, depending on the way of incorporation to the human body, the radionuclide, the radiotoxicity, the kind of radiation and its energy, the chemical compound, the half-life of the radioisotope, the target organ, the esteem of the absorbed dose, the characteristic of the accident, the clinical state of the patient and how long ago the accident happened. (Author)

THE STRUCTURE AND FUNCTION OF DEPARTMENTS OF MEDICINE.

Science.gov (United States)

Landefeld, C Seth

2016-01-01

The structure and function of departments of medicine are important for several reasons. First, departments of medicine are the biggest departments in virtually every medical school and in most universities with a medical school, and they are the largest professional units in most academic medical centers. In fact, Petersdorf described them as "the linchpins of medical schools" (1). Departments of medicine account for one-fourth or more of the academic medical enterprise: they include about one-fourth of the faculty of medical school, account for roughly one-fourth of the patient care and clinical revenue of academic medical centers, and their faculty perform a disproportionate share of teaching and research, accounting for up to 45% of National Institutes of Health (NIH) - funded research in some medical schools. Second, the department's ability to fulfill its role and advance its mission depends on its structure and function. Finally, lessons learned from examining the structure and function of departments of medicine may guide other departments and schools of medicine themselves in improving their structure and function. This paper describes the issues that face departments of medicine in 2016. I begin by providing the context for these issues with a definition of a department of medicine, describing briefly the history of departments, and stating their mission.

Rise in proton structure function

International Nuclear Information System (INIS)

Fazal-e-Aleem; Rashid, H.; Ali, S.

1996-08-01

By the choice of a new scale factor we obtain a good qualitative fit to the HERA data for the proton structure function in the small x region which exhibits double asymptotic scaling. Any scaling violations in the future measurements when made in smaller bins will be of immense value. (author). 19 refs, 6 figs

Quality assessment of protein model-structures based on structural and functional similarities.

Science.gov (United States)

Konopka, Bogumil M; Nebel, Jean-Christophe; Kotulska, Malgorzata

2012-09-21

Experimental determination of protein 3D structures is expensive, time consuming and sometimes impossible. A gap between number of protein structures deposited in the World Wide Protein Data Bank and the number of sequenced proteins constantly broadens. Computational modeling is deemed to be one of the ways to deal with the problem. Although protein 3D structure prediction is a difficult task, many tools are available. These tools can model it from a sequence or partial structural information, e.g. contact maps. Consequently, biologists have the ability to generate automatically a putative 3D structure model of any protein. However, the main issue becomes evaluation of the model quality, which is one of the most important challenges of structural biology. GOBA--Gene Ontology-Based Assessment is a novel Protein Model Quality Assessment Program. It estimates the compatibility between a model-structure and its expected function. GOBA is based on the assumption that a high quality model is expected to be structurally similar to proteins functionally similar to the prediction target. Whereas DALI is used to measure structure similarity, protein functional similarity is quantified using standardized and hierarchical description of proteins provided by Gene Ontology combined with Wang's algorithm for calculating semantic similarity. Two approaches are proposed to express the quality of protein model-structures. One is a single model quality assessment method, the other is its modification, which provides a relative measure of model quality. Exhaustive evaluation is performed on data sets of model-structures submitted to the CASP8 and CASP9 contests. The validation shows that the method is able to discriminate between good and bad model-structures. The best of tested GOBA scores achieved 0.74 and 0.8 as a mean Pearson correlation to the observed quality of models in our CASP8 and CASP9-based validation sets. GOBA also obtained the best result for two targets of CASP8, and

MODY - calculation of ordered structures by symmetry-adapted functions

Science.gov (United States)

Białas, Franciszek; Pytlik, Lucjan; Sikora, Wiesława

2016-01-01

In this paper we focus on the new version of computer program MODY for calculations of symmetryadapted functions based on the theory of groups and representations. The choice of such a functional frame of coordinates for description of ordered structures leads to a minimal number of parameters which must be used for presentation of such structures and investigations of their properties. The aim of this work is to find those parameters, which are coefficients of a linear combination of calculated functions, leading to construction of different types of structure ordering with a given symmetry. A spreadsheet script for simplification of this work has been created and attached to the program.

Physics updates from HERMES

International Nuclear Information System (INIS)

Murray, Morgan J.

2013-01-01

The HERMES collaboration presents two sets of recent results: the first related to an extraction of the g 2 nucleon structure function determined for DIS on a polarised target and the second related to the measurement of asymmetries related to the deeply virtual Compton scattering process that can be used to discover information on generalised parton distributions and hence nucleon structure.

Physics updates from HERMES

Energy Technology Data Exchange (ETDEWEB)

Murray, Morgan J. [Rm. 514b, Dept. of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ, Scotland (United Kingdom); Collaboration: HERMES Collaboration

2013-04-15

The HERMES collaboration presents two sets of recent results: the first related to an extraction of the g{sub 2} nucleon structure function determined for DIS on a polarised target and the second related to the measurement of asymmetries related to the deeply virtual Compton scattering process that can be used to discover information on generalised parton distributions and hence nucleon structure.

Leading order determination of the gluon polarisation from DIS events with high-$p_T$ hadron pairs

CERN Document Server

Adolph, C; Alexakhin, V Yu; Alexandrov, Yu; Alexeev, G D; Amoroso, A; Antonov, A A; Austregesilo, A; Badelek, B; Balestra, F; Barth, J; Baum, G; Bedfer, Y; Bernhard, J; Bertini, R; Bettinelli, M; Bicker, K; Bieling, J; Birsa, R; Bisplinghoff, J; Bordalo, P; Bradamante, F; Braun, C; Bravar, A; Bressan, A; Burtin, E; Chaberny, D; Chiosso, M; Chung, S U; Cicuttin, A; Crespo, M L; Dalla Torre, S; Das, S; Dasgupta, S S; Denisov, O.Yu; Dhara, L; Donskov, S V; Doshita, N; Duic, V; Dunnweber, W; Dziewiecki, M; Efremov, A; Elia, C; Eversheim, P D; Eyrich, W; Faessler, M; Ferrero, A; Filin, A; Finger, M; jr., M.Finger; Fischer, H; Franco, C; von Hohenesche, N.du Fresne; Friedrich, J M; Garfagnini, R; Gautheron, F; Gavrichtchouk, O P; Gazda, R; Gerassimov, S; Geyer, R; Giorgi, M; Gnesi, I; Gobbo, B; Goertz, S; Grabmuller, S; Grasso, A; Grube, B; Gushterski, R; Guskov, A; Guthorl, T; Haas, F; von Harrach, D; Hedicke, S; Heinsius, F H; Herrmann, F; Hess, C; Hinterberger, F; Horikawa, N; Hoppner, Ch; d'Hose, N; Huber, S; Ishimoto, S; Ivanov, O; Ivanshin, Yu; Iwata, T; Jahn, R; Jasinski, P; Joosten, R; Kabuss, E; Kang, D; Ketzer, B; Khaustov, G V; Khokhlov, Yu.A; Kisselev, Yu; Klein, F; Klimaszewski, K; Koblitz, S; Koivuniemi, J H; Kolosov, V N; Kondo, K; Konigsmann, K; Konorov, I; Konstantinov, V F; Korzenev, A; Kotzinian, A M; Kouznetsov, O; Kramer, M; Kroumchtein, Z V; Kunne, F.; Kurek, K; Lauser, L; Le Goff, J M; Lednev, A A; Lehmann, A; Levorato, S; Lichtenstadt, J; Maggiora, A; Magnon, A; Makke, N; Mallot, G K; Mann, A; Marchand, C; Martin, A; Marzec, J; Matsuda, T; Meyer, W; Michigami, T; Mikhailov, Yu.V; Moinester, M A; Morreale, A; Mutter, A; Nagaytsev, A; Nagel, T; Nassalski, J P; Nerling, F; Neubert, S; Neyret, D; Nikolaenko, V I; Nowak, W D; Nunes, A S; Olshevsky, A G; Ostrick, M; Padee, A; Panknin, R; Panzieri, D; Parsamyan, B; Paul, S.; Perevalova, E; Pesaro, G; Peshekhonov, D V; Piragino, G; Platchkov, S; Pochodzalla, J; Polak, J; Polyakov, V A; Pontecorvo, G; Pretz, J; Procureur, S L; Quaresma, M; Quintans, C; Rajotte, J F; Ramos, S; Rapatsky, V; Reicherz, G; Richter, A; Rocco, E; Rondio, E; Rossiyskaya, N S; Ryabchikov, D I; Samoylenko, V D; Sandacz, A; Sapozhnikov, M G; Sarkar, S.; Savin, I A; Sbrizzai, G; Schiavon, P; Schill, C.; Schluter, T; Schmidt, K; Schmitt, L; Schonning, K; Schopferer, S; Schott, M; Shevchenko, O.Yu; Silva, L; Sinha, L; Sissakian, A N; Slunecka, M; Smirnov, G I; Sosio, S; Sozzi, F; Srnka, A; Stolarski, M; Sulc, M; Sulej, R; Sznajder, P; Takekawa, S; Wolbeek, J.Ter; Tessaro, S; Tessarotto, F; Tkatchev, L G; Uhl, S; Uman, I; Vandenbroucke, M; Virius, M; Vlassov, N V; Wang, L; Windmolders, R; Wislicki, W; Wollny, H; Zaremba, K; Zavertyaev, M; Zemlyanichkina, E; Ziembicki, M; Zhuravlev, N; Zvyagin, A

2013-01-01

We present a determination of the gluon polarisation Delta g/g in the nucleon, based on the longitudinal double-spin asymmetry of DIS events with a pair of large transverse-momentum hadrons in the final state. The data were obtained by the COMPASS experiment at CERN using a 160 GeV/c polarised muon beam scattering off a polarised ^6LiD target. The gluon polarisation is evaluated by a Neural Network approach for three intervals of the gluon momentum fraction x_g covering the range 0.04 < x_g < 0.27. The values obtained at leading order in QCD do not show any significant dependence on x_g. Their average is Delta g/g = 0.125 +/- 0.060 (stat.) +/- 0.063 (syst.) at x_g=0.09 and a scale of mu^2 = 3~(GeV/c)^2.

Bound-state quark and gluon contributions to structure functions in QCD

International Nuclear Information System (INIS)

Brodsky, S.J.

1991-01-01

One can distinguish two types of contributions to the quark and gluon structure functions of hadrons in quantum chromodynamics: 'intrinsic' contributions, which are due to the direct scattering on the bound-state constituents, and 'extrinsic' contributions, which are derived from particles created in the collision. In this talk, I discuss several aspects of deep inealstic structure functions in which the bound-state structure of the proton plays a crucial role: (1) the properties of the intrinsic gluon distribution associated with the proton bound-state wavefunction; (2) the separation of the quark structure function of the proton into intrinsic 'bound-valence' and extrinsic 'non-valence' components which takes into account the Pauli principle; (3) the properties and identification of intrinsic heavy quark structure functions; and (4) a theory of shadowing and anti-shadowing of nuclear structure functions, directly related to quark-nucleon interactions and the gluon saturation phenomenon. (orig.)

Bound-state quark and gluon contributions to structure functions in QCD

International Nuclear Information System (INIS)

Brodsky, S.J.

1990-08-01

One can distinguish two types of contributions to the quark and gluon structure functions of hadrons in quantum chromodynamics: ''intrinsic'' contributions, which are due to the direct scattering on the bound-state constituents, and ''extrinsic'' contributions, which are derived from particles created in the collision. In this talk, I discussed several aspects of deep inelastic structure functions in which the bound-state structure of the proton plays a crucial role: the properties of the intrinsic gluon distribution associated with the proton bound-state wavefunction; the separation of the quark structure function of the proton onto intrinsic ''bound-valence'' and extrinsic ''non-valence'' components which takes into account the Pauli principle; the properties and identification of intrinsic heavy quark structure functions; and a theory of shadowing and anti-shadowing of nuclear structure functions, directly related to quark-nucleon interactions and the gluon saturation phenomenon. 49 refs., 5 figs

Structure to function: Spider silk and human collagen

Science.gov (United States)

Rabotyagova, Olena S.

Nature has the ability to assemble a variety of simple molecules into complex functional structures with diverse properties. Collagens, silks and muscles fibers are some examples of fibrous proteins with self-assembling properties. One of the great challenges facing Science is to mimic these designs in Nature to find a way to construct molecules that are capable of organizing into functional supra-structures by self-assembly. In order to do so, a construction kit consisting of molecular building blocks along with a complete understanding on how to form functional materials is required. In this current research, the focus is on spider silk and collagen as fibrous protein-based biopolymers that can shed light on how to generate nanostructures through the complex process of self-assembly. Spider silk in fiber form offers a unique combination of high elasticity, toughness, and mechanical strength, along with biological compatibility and biodegrability. Spider silk is an example of a natural block copolymer, in which hydrophobic and hydrophilic blocks are linked together generating polymers that organize into functional materials with extraordinary properties. Since silks resemble synthetic block copolymer systems, we adopted the principles of block copolymer design from the synthetic polymer literature to build block copolymers based on spider silk sequences. Moreover, we consider spider silk to be an important model with which to study the relationships between structure and properties in our system. Thus, the first part of this work was dedicated to a novel family of spider silk block copolymers, where we generated a new family of functional spider silk-like block copolymers through recombinant DNA technology. To provide fundamental insight into relationships between peptide primary sequence, block composition, and block length and observed morphological and structural features, we used these bioengineered spider silk block copolymers to study secondary structure

Extraction of Structure Function and Gluon Distribution Function at Low-x from Cross Section Derivative by Regge Behavior

International Nuclear Information System (INIS)

Boroun, G.R.

2005-01-01

An approximation method based on Regge behavior is presented. This new method relates the reduced cross section derivative and the structure function Regge behavior at low x. With the use of this approximation method, the C and λ parameters are calculated from the HERA reduced cross section data taken at low-x. Also, we calculate the structure functions F 2 (x,Q 2 ) even for low-x values, which have not been investigated. To test the validity of calculated structure functions, we find the gluon distribution function in the Leading order approximation based on Regge behaviour of structure function and compare to the NLO QCD fit to H1 data and NLO parton distribution function.

Diffuse scattering and defect structure simulations a cook book using the program DISCUS

CERN Document Server

Neder, Reinhard B

2009-01-01

In recent years it has become apparent that knowing the average atomic structure of materials is insufficient to understand their properties. Diffuse scattering in addition to the Bragg scattering holds the key to learning about defects in materials, the topic of many recent books. What has been missing is a detailed step-by-step guide how to simulate disordered materials. The DISCUS cook book fills this need covering simple topics such as building a computer crystal to complextopic such as domain structures, stacking faults or using advanced refinement techniques to adjust parameters on a dis

Population structure analysis using rare and common functional variants

Directory of Open Access Journals (Sweden)

Ding Lili

2011-11-01

Full Text Available Abstract Next-generation sequencing technologies now make it possible to genotype and measure hundreds of thousands of rare genetic variations in individuals across the genome. Characterization of high-density genetic variation facilitates control of population genetic structure on a finer scale before large-scale genotyping in disease genetics studies. Population structure is a well-known, prevalent, and important factor in common variant genetic studies, but its relevance in rare variants is unclear. We perform an extensive population structure analysis using common and rare functional variants from the Genetic Analysis Workshop 17 mini-exome sequence. The analysis based on common functional variants required 388 principal components to account for 90% of the variation in population structure. However, an analysis based on rare variants required 532 significant principal components to account for similar levels of variation. Using rare variants, we detected fine-scale substructure beyond the population structure identified using common functional variants. Our results show that the level of population structure embedded in rare variant data is different from the level embedded in common variant data and that correcting for population structure is only as good as the level one wishes to correct.

Cardiac structure and function predicts functional decline in the oldest old.

Science.gov (United States)

Leibowitz, David; Jacobs, Jeremy M; Lande-Stessman, Irit; Gilon, Dan; Stessman, Jochanan

2018-02-01

Background This study examined the association between cardiac structure and function and the deterioration in activities of daily living (ADLs) in an age-homogenous, community-dwelling population of patients born in 1920-1921 over a five-year follow-up period. Design Longitudinal cohort study. Methods Patients were recruited from the Jerusalem Longitudinal Cohort Study, which has followed an age-homogenous cohort of Jerusalem residents born in 1920-1921. Patients underwent home echocardiography and were followed up for five years. Dependence was defined as needing assistance with one or more basic ADL. Standard echocardiographic assessment of cardiac structure and function, including systolic and diastolic function, was performed. Reassessment of ADLs was performed at the five-year follow-up. Results A total of 459 patients were included in the study. Of these, 362 (79%) showed a deterioration in at least one ADL at follow-up. Patients with functional deterioration had a significantly higher left ventricular mass index and left atrial volume with a lower ejection fraction. There was no significant difference between the diastolic parameters the groups in examined. When the data were examined categorically, a significantly larger percentage of patients with functional decline had an abnormal left ventricular ejection fraction and left ventricular hypertrophy. The association between left ventricular mass index and functional decline remained significant in all multivariate models. Conclusions In this cohort of the oldest old, an elevated left ventricular mass index, higher left atrial volumes and systolic, but not diastolic dysfunction, were predictive of functional disability.

Neuropsychological functioning and brain structure in schizophrenia.

Science.gov (United States)

Crespo-Facorro, Benedicto; Barbadillo, Laura; Pelayo-Terán, José Maria; Rodríguez-Sánchez, José Manuel

2007-08-01

Cognitive deficits are core features of schizophrenia that are already evident at early phases of the illness. The study of specific relationships between cognition and brain structure might provide valuable clues about neural basis of schizophrenia and its phenomenology. The aim of this article was to review the most consistent findings of the studies exploring the relationships between cognitive deficits and brain anomalies in schizophrenia. Besides several important methodological shortcomings to bear in mind before drawing any consistent conclusion from the revised literature, we have attempted to systematically summarize these findings. Thus, this review has revealed that whole brain volume tends to positively correlate with a range of cognitive domains in healthy volunteers and female patients. An association between prefrontal morphological characteristics and general inability to control behaviour seems to be present in schizophrenia patients. Parahippocampal volume is related to semantic cognitive functions. Thalamic anomalies have been associated with executive deficits specifically in patients. Available evidence on the relationship between cognitive functions and cerebellar structure is still contradictory. Nonetheless, a larger cerebellum appears to be associated with higher IQ in controls and in female patients. Enlarged ventricles, including lateral and third ventricles, are associated with deficits in attention, executive and premorbid cognitive functioning in patients. Several of these reported findings seem to be counterintuitive according to neural basis of cognitive functioning drawn from animal, lesion, and functional imaging investigations. Therefore, there is still a great need for more methodologically stringent investigations that would help in the advance of our understanding of the cognition/brain structure relationships in schizophrenia.

The MentDis_ICF65+ study protocol: prevalence, 1-year incidence and symptom severity of mental disorders in the elderly and their relationship to impairment, functioning (ICF) and service utilisation.

Science.gov (United States)

Andreas, Sylke; Härter, Martin; Volkert, Jana; Hausberg, Maria; Sehner, Susanne; Wegscheider, Karl; Rabung, Sven; Ausín, Berta; Canuto, Alessandra; Da Ronch, Chiara; Grassi, Luigi; Hershkovitz, Yael; Lelliott, Paul; Muñoz, Manuel; Quirk, Alan; Rotenstein, Ora; Santos-Olmo, Ana Belén; Shalev, Arieh; Siegert, Jens; Weber, Kerstin; Wittchen, Hans-Ulrich; Koch, Uwe; Schulz, Holger

2013-02-18

The EU currently lacks reliable data on the prevalence and incidence of mental disorders in older people. Despite the availability of several national and international epidemiological studies, the size and burden of mental disorders in the elderly remain unclear due to various reasons. Therefore, the aims of the MentDis_ICF65+ study are (1) to adapt existing assessment instruments, and (2) to collect data on the prevalence, the incidence, and the natural course and prognosis of mental disorders in the elderly. Using a cross-sectional and prospective longitudinal design, this multi-centre study from six European countries and associated states (Germany, Great Britain, Israel, Italy, Spain, and Switzerland) is based on age-stratified, random samples of elderly people living in the community. The study program consists of three phases: (1) a methodological phase devoted primarily to the adaptation of age- and gender-specific assessment tools for older people (e.g., the Composite International Diagnostic Interview, CIDI) as well as psychometric evaluations including translation, back translation; (2) a baseline community study in all participating countries to assess the lifetime, 12 month and 1 month prevalence and comorbidity of mental disorders, including prior course, quality of life, health care utilization and helpseeking, impairments and participation and, (3) a 12 month follow-up of all baseline participants to monitor course and outcome as well as examine predictors. The study is an essential step forward towards the further development and improvement of harmonised instruments for the assessment of mental disorders as well as the evaluation of activity impairment and participation in older adults. This study will also facilitate the comparison of cross-cultural results. These results will have bearing on mental health care in the EU and will offer a starting point for necessary structural changes to be initiated for mental health care policy at the level of

Revisiting parton evolution and the large-x limit

International Nuclear Information System (INIS)

Dokshitzer, Yu.L.; Marchesini, G.; Salam, G.P.

2006-01-01

This remark is part of an ongoing project to simplify the structure of the multi-loop anomalous dimensions for parton distributions and fragmentation functions. It answers the call for a 'structural explanation' of a 'very suggestive' relation found by Moch, Vermaseren and Vogt in the context of the x->1 behaviour of three-loop DIS anomalous dimensions. It also highlights further structure that remains to be fully explained

Altered resting brain function and structure in professional badminton players.

Science.gov (United States)

Di, Xin; Zhu, Senhua; Jin, Hua; Wang, Pin; Ye, Zhuoer; Zhou, Ke; Zhuo, Yan; Rao, Hengyi

2012-01-01

Neuroimaging studies of professional athletic or musical training have demonstrated considerable practice-dependent plasticity in various brain structures, which may reflect distinct training demands. In the present study, structural and functional brain alterations were examined in professional badminton players and compared with healthy controls using magnetic resonance imaging (MRI) and resting-state functional MRI. Gray matter concentration (GMC) was assessed using voxel-based morphometry (VBM), and resting-brain functions were measured by amplitude of low-frequency fluctuation (ALFF) and seed-based functional connectivity. Results showed that the athlete group had greater GMC and ALFF in the right and medial cerebellar regions, respectively. The athlete group also demonstrated smaller ALFF in the left superior parietal lobule and altered functional connectivity between the left superior parietal and frontal regions. These findings indicate that badminton expertise is associated with not only plastic structural changes in terms of enlarged gray matter density in the cerebellum, but also functional alterations in fronto-parietal connectivity. Such structural and functional alterations may reflect specific experiences of badminton training and practice, including high-capacity visuo-spatial processing and hand-eye coordination in addition to refined motor skills.

Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach.

Science.gov (United States)

Otey, Christopher R; Silberg, Jonathan J; Voigt, Christopher A; Endelman, Jeffrey B; Bandara, Geethani; Arnold, Frances H

2004-03-01

Recombination generates chimeric proteins whose ability to fold depends on minimizing structural perturbations that result when portions of the sequence are inherited from different parents. These chimeric sequences can display functional properties characteristic of the parents or acquire entirely new functions. Seventeen chimeras were generated from two CYP102 members of the functionally diverse cytochrome p450 family. Chimeras predicted to have limited structural disruption, as defined by the SCHEMA algorithm, displayed CO binding spectra characteristic of folded p450s. Even this small population exhibited significant functional diversity: chimeras displayed altered substrate specificities, a wide range in thermostabilities, up to a 40-fold increase in peroxidase activity, and ability to hydroxylate a substrate toward which neither parent heme domain shows detectable activity. These results suggest that SCHEMA-guided recombination can be used to generate diverse p450s for exploring function evolution within the p450 structural framework.

Therapeutic monoclonal antibody N-glycosylation - Structure, function and therapeutic potential.

Science.gov (United States)

Cymer, Florian; Beck, Hermann; Rohde, Adelheid; Reusch, Dietmar

2018-03-01

Therapeutic antibodies (IgG-type) contain several post-translational modifications (PTMs) whereby introducing a large heterogeneity, both structural and functional, into this class of therapeutics. Of these modifications, glycosylation in the fragment crystallizable (Fc) region is the most heterogeneous PTM, which can affect the stability of the molecule and interactions with Fc-receptors in vivo. Hence, the glycoform distribution can affect the mode of action and have implications for bioactivity, safety and efficacy of the drug. Main topics of the manuscript include: What factors influence the (Fc) glycan pattern in therapeutic antibodies and how can these glycans be characterized? How does structure of the Fc-glycan relate to function and what methods are available to characterize those functions? Although heterogeneous in their scope, the different sections are intended to combine current knowledge on structure-function correlations of IgG glycan structures with regard to Fc (effector) functions, as well as basic aspects and methodologies for their assessment. Copyright © 2017. Published by Elsevier Ltd.

Plasmodesmata: Structure and Function

Directory of Open Access Journals (Sweden)

Thomas David Geydan

2006-07-01

Full Text Available Plasmodesmata are channels that transverse the cell wall and membrane. These specialized and non passive channels act like gates that facilitate and regulate both communication and transportation of molecules such as water, nutrients, metabolites and macromolecules between plant cells. In the last decade a new point of view of plasmodesmata has emerged, and studies have  demonstrated that these channels are more complex. In this brief note, we pretend to expose the actual knowledge of plasmodesmata, focusing on their structure and function.

Transition behavior of asymmetric polystyrene-b-poly(2-vinylpyridine) films: A stable hexagonally modulated layer structure

Energy Technology Data Exchange (ETDEWEB)

Park, Sungmin; Koo, Kyosung; Kim, Kyunginn; Ahn, Hyungju; Lee, Byeongdu; Park, Cheolmin; Ryu, Du Yeol

2015-03-09

The phase transitions in the films of an asymmetric polystyrene-b-poly(2-vinylpyridine) (PS-b-P2VP) were investigated by grazing incidence small-angle X-ray scattering (GISAXS) and transmission electron microscopy (TEM). Compared with the sequential transitions in the bulk, hexagonally perforated layer (HPL) – gyroid (GYR) – disorder (DIS) upon heating, the transitions in film geometry were dramatically changed with decreasing thickness due to the growing preferential interactions from substrate, resulting in a thickness-dependent transition diagram including four different morphologies of hexagonally modulated layer (HML), coexisting (HML and GYR), GYR, and DIS. Particularly in the films ≤10Lo, where Lo is d-spacing at 150 °C, a stable HML structure was identified even above the order-to-disorder transition (ODT) temperature of the bulk, which was attributed to the suppressed compositional fluctuations by the enhanced substrate interactions.

Structure functions and parton distributions

International Nuclear Information System (INIS)

Olness, F.; Tung, Wu-Ki

1991-04-01

Activities of the structure functions and parton distributions group is summarized. The impact of scheme-dependence of parton distributions (especially sea-quarks and gluons) on the quantitative formulation of the QCD parton model is highlighted. Recent progress on the global analysis of parton distributions is summarized. Issues on the proper use of the next-to-leading parton distributions are stressed

Analysis of the proton longitudinal structure function from the gluon distribution function

International Nuclear Information System (INIS)

Boroun, G.R.; Rezaei, B.

2012-01-01

We make a critical, next-to-leading order, study of the relationship between the longitudinal structure function F L and the gluon distribution proposed in Cooper-Sarkar et al. (Z. Phys. C 39:281, 1988; Acta Phys. Pol. B 34:2911 2003), which is frequently used to extract the gluon distribution from the proton longitudinal structure function at small x. The gluon density is obtained by expanding at particular choices of the point of expansion and compared with the hard Pomeron behavior for the gluon density. Comparisons with H1 data are made and predictions for the proposed best approach are also provided. (orig.)

MRI in Optic Neuritis: Structure, Function, Interactions

DEFF Research Database (Denmark)

Fuglø, Dan

2011-01-01

resonance imaging (MRI), and the visual evoked potential (VEP) continues to show a delayed P100 indicating persistent demyelination. The explanation for this apparent discrepancy between structure and function could be due to either a redundancy in the visual pathways so that some degree of signal loss...... will have very few or no clinical symptoms, or it could be due to compensatory mechanisms in the visual pathway or the visual cortex. In order to understand the pathophysiology and recovery processes in ON it is essential to have sensitive methods to asses both structure and function. These methods...... are low. Functional MRI (fMRI) is a non-invasive technique that can measure brain activity with a high spatial resolution. Recently, technical and methodological advancements have made it feasible to record VEPs and fMRI simultaneously and the relationship between averaged VEPs and averaged fMRI signals...

Performance analysis, quality function deployment and structured methods

Science.gov (United States)

Maier, M. W.

Quality function deployment, (QFD), an approach to synthesizing several elements of system modeling and design into a single unit, is presented. Behavioral, physical, and performance modeling are usually considered as separate aspects of system design without explicit linkages. Structured methodologies have developed linkages between behavioral and physical models before, but have not considered the integration of performance models. QFD integrates performance models with traditional structured models. In this method, performance requirements such as cost, weight, and detection range are partitioned into matrices. Partitioning is done by developing a performance model, preferably quantitative, for each requirement. The parameters of the model become the engineering objectives in a QFD analysis and the models are embedded in a spreadsheet version of the traditional QFD matrices. The performance model and its parameters are used to derive part of the functional model by recognizing that a given performance model implies some structure to the functionality of the system.

The spin-dependent structure function g1 of the deuteron

International Nuclear Information System (INIS)

Bueltmann, S.

1996-01-01

Results on the spin-dependent structure function g 1 d of the deuteron measured by the Spin Muon Collaboration at CERN are presented. They are based on deep-inelastic scattering of 190 GeV polarized muons off a polarized deuteron target in the kinematic range of 0.003 ≤ x Bj ≤ 0.7 and 1 GeV 2 ≤ Q 2 ≤ 60 GeV 2 . The structure function is found to be negative for small values of x Bj , while the proton structure function g 1 p measured earlier by the SMC is positive over the whole x Bj -range. The Bjorken sum rule is in good agreement with the first moments of the structure functions, while the Ellis-Jaffe sum rule is violated by more than three standard deviations for the deuteron measurement. (author)

Conflict between object structural and functional affordances in peripersonal space.

Science.gov (United States)

Kalénine, Solène; Wamain, Yannick; Decroix, Jérémy; Coello, Yann

2016-10-01

Recent studies indicate that competition between conflicting action representations slows down planning of object-directed actions. The present study aims to assess whether similar conflict effects exist during manipulable object perception. Twenty-six young adults performed reach-to-grasp and semantic judgements on conflictual objects (with competing structural and functional gestures) and non-conflictual objects (with similar structural and functional gestures) presented at difference distances in a 3D virtual environment. Results highlight a space-dependent conflict between structural and functional affordances. Perceptual judgments on conflictual objects were slower that perceptual judgments on non-conflictual objects, but only when objects were presented within reach. Findings demonstrate that competition between structural and functional affordances during object perception induces a processing cost, and further show that object position in space can bias affordance competition. Copyright © 2016 Elsevier B.V. All rights reserved.

Adaptation of brain functional and structural networks in aging.

Directory of Open Access Journals (Sweden)

Annie Lee

Full Text Available The human brain, especially the prefrontal cortex (PFC, is functionally and anatomically reorganized in order to adapt to neuronal challenges in aging. This study employed structural MRI, resting-state fMRI (rs-fMRI, and high angular resolution diffusion imaging (HARDI, and examined the functional and structural reorganization of the PFC in aging using a Chinese sample of 173 subjects aged from 21 years and above. We found age-related increases in the structural connectivity between the PFC and posterior brain regions. Such findings were partially mediated by age-related increases in the structural connectivity of the occipital lobe within the posterior brain. Based on our findings, it is thought that the PFC reorganization in aging could be partly due to the adaptation to age-related changes in the structural reorganization of the posterior brain. This thus supports the idea derived from task-based fMRI that the PFC reorganization in aging may be adapted to the need of compensation for resolving less distinctive stimulus information from the posterior brain regions. In addition, we found that the structural connectivity of the PFC with the temporal lobe was fully mediated by the temporal cortical thickness, suggesting that the brain morphology plays an important role in the functional and structural reorganization with aging.

Adaptation of brain functional and structural networks in aging.

Science.gov (United States)

Lee, Annie; Ratnarajah, Nagulan; Tuan, Ta Anh; Chen, Shen-Hsing Annabel; Qiu, Anqi

2015-01-01

The human brain, especially the prefrontal cortex (PFC), is functionally and anatomically reorganized in order to adapt to neuronal challenges in aging. This study employed structural MRI, resting-state fMRI (rs-fMRI), and high angular resolution diffusion imaging (HARDI), and examined the functional and structural reorganization of the PFC in aging using a Chinese sample of 173 subjects aged from 21 years and above. We found age-related increases in the structural connectivity between the PFC and posterior brain regions. Such findings were partially mediated by age-related increases in the structural connectivity of the occipital lobe within the posterior brain. Based on our findings, it is thought that the PFC reorganization in aging could be partly due to the adaptation to age-related changes in the structural reorganization of the posterior brain. This thus supports the idea derived from task-based fMRI that the PFC reorganization in aging may be adapted to the need of compensation for resolving less distinctive stimulus information from the posterior brain regions. In addition, we found that the structural connectivity of the PFC with the temporal lobe was fully mediated by the temporal cortical thickness, suggesting that the brain morphology plays an important role in the functional and structural reorganization with aging.

Measurement of transverse momentum dependent asymmetries with COMPASS experimental at CERN

Energy Technology Data Exchange (ETDEWEB)

Venugopal, Girisan

2007-07-01

The COMPASS experiment, which started running at the European Council for Nuclear Research, CERN, in Geneva in 2001, is currently investigating in a wide ranging programme the spin structure of the nucleon through deep-inelastic scattering (DIS). The experiment uses a polarized muon beam and a polarized deuterium target, which together allow access to all terms of the polarized DIS cross-section. Two of the most important functions which COMPASS is designed to full are a precision measurement of the gluon polarization {delta}G and the investigation of the transverse spin effects, specially extracting the transverse polarized quark distribution functions {delta}{sub T}q. In Semi-Inclusive DIS of polarized leptons on a transversely polarized target, eight azimuthal modulations appear in the cross-section. Within the QCD parton model, four azimuthal asymmetries can be interpreted at leading order, two of them being the Collins and Sivers asymmetries. The other two leading twist asymmetries are related to different transverse momentum dependent quark distribution functions. There are four additional asymmetries which can be interpreted as twist-three contributions. This thesis describes the analysis with the data taken with transverse spin configuration during the COMPASS beam-time 2002-2004, resulting in the extraction of the eight Transverse Momentum Dependent (TMD) asymmetries. (orig.)

Measurement of transverse momentum dependent asymmetries with COMPASS experimental at CERN

International Nuclear Information System (INIS)

Venugopal, Girisan

2007-01-01

The COMPASS experiment, which started running at the European Council for Nuclear Research, CERN, in Geneva in 2001, is currently investigating in a wide ranging programme the spin structure of the nucleon through deep-inelastic scattering (DIS). The experiment uses a polarized muon beam and a polarized deuterium target, which together allow access to all terms of the polarized DIS cross-section. Two of the most important functions which COMPASS is designed to full are a precision measurement of the gluon polarization ΔG and the investigation of the transverse spin effects, specially extracting the transverse polarized quark distribution functions Δ T q. In Semi-Inclusive DIS of polarized leptons on a transversely polarized target, eight azimuthal modulations appear in the cross-section. Within the QCD parton model, four azimuthal asymmetries can be interpreted at leading order, two of them being the Collins and Sivers asymmetries. The other two leading twist asymmetries are related to different transverse momentum dependent quark distribution functions. There are four additional asymmetries which can be interpreted as twist-three contributions. This thesis describes the analysis with the data taken with transverse spin configuration during the COMPASS beam-time 2002-2004, resulting in the extraction of the eight Transverse Momentum Dependent (TMD) asymmetries. (orig.)

CC DIS at α3s in Mellin-N and Bjorken-x spaces

International Nuclear Information System (INIS)

Rogal, M.

2007-11-01

Third-order results for the structure functions of charged-current deep-inelastic scattering are discussed. New results for 11'th Mellin moment for F 2,L νp- anti νp structure functions and 12'th moment for F 3 νp- anti νp are presented as well as corresponding higherMellin moments of differences between the respective crossing-even and -odd coefficient functions. Approximations in Bjorken-x space for these differences obtained with lowest five moments as well as consistency of new results with these approximations are discussed. The 1/N c suppression of the differences is shown and the correction to the Paschos-Wolfenstein relation is discussed. (orig.)

Photon structure functions with heavy particle mass effects

Energy Technology Data Exchange (ETDEWEB)

Uematsu, Tsuneo, E-mail: uematsu@scphys.kyoto-u.jp [Graduate School of Science, Kyoto University, Kitashirakawa, Sakyo-ku, Kyoto, 606-8502 (Japan); Maskawa Institute for Science and Culture, Kyoto Sangyo University, Kamigamo, Kita-ku, Kyoto 603-8555 (Japan)

2013-01-15

In the framework of the perturbative QCD we investigate heavy particle mass effects on the unpolarized and polarized photon structure functions, F{sub 2}{sup γ} and g{sub 1}{sup γ}, respectively. We present our basic formalism to treat heavy particle mass effects to NLO in perturbative QCD. We also study heavy quark effects on the QCD sum rule for the first moment of g{sub 1}{sup γ}, which is related to axial anomaly. The photon structure function in supersymmetric QCD is also briefly discussed.

Network-level structure-function relationships in human neocortex

NARCIS (Netherlands)

Miŝic, Bratislav; Betzel, Richard F.; De Reus, Marcel A.; Van Den Heuvel, Martijn P.; Berman, Marc G.; McIntosh, Anthony R.; Sporns, Olaf

2016-01-01

The dynamics of spontaneous fluctuations in neural activity are shaped by underlying patterns of anatomical connectivity. While numerous studies have demonstrated edge-wise correspondence between structural and functional connections, much less is known about how large-scale coherent functional

Calculation of the nucleon structure function from the nucleon wave function

Science.gov (United States)

Hussar, Paul E.

1993-01-01

Harmonic oscillator wave functions have played an historically important role in our understanding of the structure of the nucleon, most notably by providing insight into the mass spectra of the low-lying states. High energy scattering experiments are known to give us a picture of the nucleon wave function at high-momentum transfer and in a frame in which the nucleon is traveling fast. A simple model that crosses the twin bridges of momentum scale and Lorentz frame that separate the pictures of the nucleon wave function provided by the deep inelastic scattering data and by the oscillator model is presented.

Longitudinal structure function from logarithmic slopes of F2 at low x

Science.gov (United States)

Boroun, G. R.

2018-01-01

Using Laplace transform techniques, I calculate the longitudinal structure function FL(x ,Q2) from the scaling violations of the proton structure function F2(x ,Q2) and make a critical study of this relationship between the structure functions at leading order (LO) up to next-to-next-to leading order (NNLO) analysis at small x . Furthermore, I consider heavy quark contributions to the relation between the structure functions, which leads to compact formula for Nf=3 +Heavy . The nonlinear corrections to the longitudinal structure function at LO up to NNLO analysis are shown in the Nf=4 (light quark flavor) based on the nonlinear corrections at R =2 and R =4 GeV-1 . The results are compared with experimental data of the longitudinal proton structure function FL in the range of 6.5 ≤Q2≤800 GeV2 .

Structure and function of wood

Science.gov (United States)

Alex Wiedenhoeft

2010-01-01

Wood is a complex biological structure, a composite of many chemistries and cell types acting together to serve the needs of a living plant. Attempting to understand wood in the context of wood technology, we have often overlooked the key and basic fact that wood evolved over the course of millions of years to serve three main functions in plants― conduction of water...

Significance tests for functional data with complex dependence structure

KAUST Repository

Staicu, Ana-Maria; Lahiri, Soumen N.; Carroll, Raymond J.

2015-01-01

We propose an L (2)-norm based global testing procedure for the null hypothesis that multiple group mean functions are equal, for functional data with complex dependence structure. Specifically, we consider the setting of functional data with a

Generalized functions, convergence structures, and their applications

CERN Document Server

Pap, Endre; Pilipović, Stevan; Vladimirov, Vasilij; International Conference "Generalized functions, convergence structures and their applications" (GFCA-87)

1988-01-01

This Proceedings consists of a collection of papers presented at the International Conference "Generalized functions, convergence structures and their applications" held from June 23-27, 1987 in Dubrovnik, Yugoslavia (GFCA-87): 71 participants from 21 countr~es from allover the world took part in the Conference. Proceedings reflects the work of the Conference. Plenary lectures of J. Burzyk, J. F. Colombeau, W. Gahler, H. Keiter, H. Komatsu, B. Stankovic, H. G. Tillman, V. S. Vladimirov provide an up-to-date account of the cur­ rent state of the subject. All these lectures, except H. G. Tillman's, are published in this volume. The published communications give the contemporary problems and achievements in the theory of generalized functions, in the theory of convergence structures and in their applications, specially in the theory of partial differential equations and in the mathematical physics. New approaches to the theory of generalized functions are presented, moti­ vated by concrete problems of applicat...

Nucleon structure functions from lattice operator product expansion

Energy Technology Data Exchange (ETDEWEB)

Chambers, A.J.; Somfleth, K.; Young, R.D.; Zanotti, J.M. [Adelaide Univ., SA (Australia). CSSM, Dept. of Physics; Horsley, R. [Edinburgh Univ. (United Kingdom). School of Physics and Astronomy; Nakamura, Y. [RIKEN Advanced Institute for Computational Science, Kobe (Japan); Perlt, H.; Schiller, A. [Leipzig Univ. (Germany). Inst. fuer Theoretische Physik; Rakow, P.E.L. [Liverpool Univ. (United Kingdom). Theoretical Physics Div.; Schierholz, G. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)

2017-03-15

Deep-inelastic scattering, in the laboratory and on the lattice, is most instructive for understanding how the nucleon is built from quarks and gluons. The long-term goal is to compute the associated structure functions from first principles. So far this has been limited to model calculations. In this Letter we propose a new method to compute the structure functions directly from the virtual, all-encompassing Compton amplitude, utilizing the operator product expansion. This overcomes issues of renormalization and operator mixing, which so far have hindered lattice calculations of power corrections and higher moments.

Nucleon structure functions from lattice operator product expansion

International Nuclear Information System (INIS)

Chambers, A.J.; Somfleth, K.; Young, R.D.; Zanotti, J.M.; Perlt, H.; Schiller, A.

2017-03-01

Deep-inelastic scattering, in the laboratory and on the lattice, is most instructive for understanding how the nucleon is built from quarks and gluons. The long-term goal is to compute the associated structure functions from first principles. So far this has been limited to model calculations. In this Letter we propose a new method to compute the structure functions directly from the virtual, all-encompassing Compton amplitude, utilizing the operator product expansion. This overcomes issues of renormalization and operator mixing, which so far have hindered lattice calculations of power corrections and higher moments.

Structure and function of nanoparticle-protein conjugates

International Nuclear Information System (INIS)

Aubin-Tam, M-E; Hamad-Schifferli, K

2008-01-01

Conjugation of proteins to nanoparticles has numerous applications in sensing, imaging, delivery, catalysis, therapy and control of protein structure and activity. Therefore, characterizing the nanoparticle-protein interface is of great importance. A variety of covalent and non-covalent linking chemistries have been reported for nanoparticle attachment. Site-specific labeling is desirable in order to control the protein orientation on the nanoparticle, which is crucial in many applications such as fluorescence resonance energy transfer. We evaluate methods for successful site-specific attachment. Typically, a specific protein residue is linked directly to the nanoparticle core or to the ligand. As conjugation often affects the protein structure and function, techniques to probe structure and activity are assessed. We also examine how molecular dynamics simulations of conjugates would complete those experimental techniques in order to provide atomistic details on the effect of nanoparticle attachment. Characterization studies of nanoparticle-protein complexes show that the structure and function are influenced by the chemistry of the nanoparticle ligand, the nanoparticle size, the nanoparticle material, the stoichiometry of the conjugates, the labeling site on the protein and the nature of the linkage (covalent versus non-covalent)

How to analyze Structure and Function in Tissue – based Diagnosis?

Directory of Open Access Journals (Sweden)

Klaus Kayser

2016-04-01

Full Text Available Background Tissue – based diagnosis (morphological analysis of human tissue judges, measures and interprets morphologic images which have been acquired from human tissue. It translates the findings into a diagnosis or description of biological functions. What are its principle algorithms and theoretical background? Theory Pathologists are used to distinguish between structure and function. Biological structures are ordered clusters of material (genes, nuclei, cells, organs, etc., which remain constant during the period of detection and observation. They are commonly embedded or appear in circumscribed spaces. These spaces are clearly separated from their environment (background. Functions are forces that act on structures. They modify their appearance, create and delete structures and their spatial relationship. The recognition of both structures and functions is dependent upon the observation time: Material that remains unchanged within the observation period is called structure, its changes between a series of observations a function. Derivatives Biological structures and functions should be interpreted in relation to the observation time. Functions can be considered structural gradients of time or of observation periods. Implementation The analysis of conventional stained histological slides reflects to a short non changeable observation time, which in reality cannot be repeated at different times on the same tissue. Acquired digital images such as virtual slides (VS offer the opportunity of simulating different observation times if object features are analyzed that reflect structural changes at different times. The measurement of immunohistochemal intensity levels performed on the same structure can be considered a time series of the binding or antigen – antibody process. The obtained frame of these measurements can be mapped on chemical significant descriptors such as Shannon’s and structural entropy, and their entropy flows. Material

General quadratic gauge theory: constraint structure, symmetries and physical functions

Energy Technology Data Exchange (ETDEWEB)

Gitman, D M [Institute of Physics, University of Sao Paulo (Brazil); Tyutin, I V [Lebedev Physics Institute, Moscow (Russian Federation)

2005-06-17

How can we relate the constraint structure and constraint dynamics of the general gauge theory in the Hamiltonian formulation to specific features of the theory in the Lagrangian formulation, especially relate the constraint structure to the gauge transformation structure of the Lagrangian action? How can we construct the general expression for the gauge charge if the constraint structure in the Hamiltonian formulation is known? Whether we can identify the physical functions defined as commuting with first-class constraints in the Hamiltonian formulation and the physical functions defined as gauge invariant functions in the Lagrangian formulation? The aim of the present paper is to consider the general quadratic gauge theory and to answer the above questions for such a theory in terms of strict assertions. To fulfil such a programme, we demonstrate the existence of the so-called superspecial phase-space variables in terms of which the quadratic Hamiltonian action takes a simple canonical form. On the basis of such a representation, we analyse a functional arbitrariness in the solutions of the equations of motion of the quadratic gauge theory and derive the general structure of symmetries by analysing a symmetry equation. We then use these results to identify the two definitions of physical functions and thus prove the Dirac conjecture.

Visual Restoration after Cataract Surgery Promotes Functional and Structural Brain Recovery

Directory of Open Access Journals (Sweden)

Haotian Lin

2018-04-01

Full Text Available Background: Visual function and brain function decline concurrently with aging. Notably, cataract patients often present with accelerated age-related decreases in brain function, but the underlying mechanisms are still unclear. Optical structures of the anterior segment of the eyes, such as the lens and cornea, can be readily reconstructed to improve refraction and vision quality. However, the effects of visual restoration on human brain function and structure remain largely unexplored. Methods: A prospective, controlled clinical trial was conducted. Twenty-six patients with bilateral age-related cataracts (ARCs who underwent phacoemulsification and intraocular lens implantation and 26 healthy controls without ARC, matched for age, sex, and education, were recruited. Visual functions (including visual acuity, visual evoke potential, and contrast sensitivity, the Mini-Mental State Examination and functional magnetic resonance imaging (including the fractional amplitude of low-frequency fluctuations and grey matter volume variation were assessed for all the participants and reexamined for ARC patients after cataract surgery. This trial was registered with ClinicalTrials.gov (NCT02644720. Findings: Compared with the healthy controls, the ARC patients presented decreased brain functionality as well as structural alterations in visual and cognitive-related brain areas preoperatively. Three months postoperatively, significant functional improvements were observed in the visual and cognitive-related brain areas of the patients. Six months postoperatively, the patients' grey matter volumes in these areas were significantly increased. Notably, both the function and structure in the visual and cognitive-related brain areas of the patients improved significantly and became comparable to those of the healthy controls 6 months postoperatively. Interpretation: We demonstrated that ocular reconstruction can functionally and structurally reverse cataract

Structure and function of mammalian cilia

DEFF Research Database (Denmark)

Satir, Peter; Christensen, Søren T

2008-01-01

In the past half century, beginning with electron microscopic studies of 9 + 2 motile and 9 + 0 primary cilia, novel insights have been obtained regarding the structure and function of mammalian cilia. All cilia can now be viewed as sensory cellular antennae that coordinate a large number...

Structure functions of longitudinal virtual photons at low virtualities

International Nuclear Information System (INIS)

Ioffe, B.L.; Shushpanov, I.A.

1996-01-01

The structure functions F L 1 and F L 2 of longitudinal virtual photons at low virtualities are calculated in the framework of chiral perturbation theory (ChPT) in the zero and first order of ChPT. It is assumed that the virtuality of a target longitudinal photon p 2 is much less than the virtuality of the hard projectile photon Q 2 and both are less than the characteristic ChPT scale. In this approximation the structure functions are determined by the production of two pions in γγ collisions. The numerical results for F L 2 and F L 1 are presented (the upper index refers to the longitudinal polarization of the virtual target photon). The possibilities of measurements of these structure functions are briefly discussed. copyright 1996 The American Physical Society

Measurement of the nucleon structure functions

International Nuclear Information System (INIS)

Gordon, B.A.; Loomis, W.A.; Pipkin, F.M.; Pordes, S.H.; Sessoms, A.L.; Shambroom, W.D.; Tao, C.; Verhey, L.J.; Wilson, R.; Anderson, H.L.; Fine, R.M.; Heisterberg, R.H.; Kinnison, W.W.; Matis, H.S.; Mo, L.W.; Myrianthopoulos, L.C.; Wright, S.C.; Francis, W.R.; Hicks, R.G.; Kirk, T.B.W.; Quirk, T.W.; Bharadwaj, V.K.; Booth, N.E.; Kirkbride, G.I.; Proudfoot, J.; Skuja, A.; Staton, M.A.; Williams, W.S.C.

1979-01-01

Measurements have been made of the inclusive scattering of 96, 147, and 219 GeV muons from hydrogen, and of 147 GeV muons from deuterium. Results are presented for the nucleon structure function F 2 (x,Q 2 ) [equivalentνW 2 (x,Q 2 )] for 10 2 2 . The value of F 2 rises with Q 2 at small x, and falls with Q 2 at large x, in agreement with the ideas of quantum chromodynamics. An average value of the ratio sigma/sub L//sigma/sub T/ equivalent R = 0.52 +- 0.35 has been obtained for the region 0.003 2 2 . The values of F 2 from this experiment have been combined with those from other charged-lepton scattering experiments to determine moments of the structure functions. The variation with Q 2 of these moments is used to derive values for Λ, taking into account corrections up to second order in α/sub s/. The fit to the data is very good

Measurement of the electron structure function F2e at LEP energies

Directory of Open Access Journals (Sweden)

J. Abdallah

2014-10-01

Full Text Available The hadronic part of the electron structure function F2e has been measured for the first time, using e+e− data collected by the DELPHI experiment at LEP, at centre-of-mass energies of s=91.2–209.5 GeV. The data analysis is simpler than that of the measurement of the photon structure function. The electron structure function F2e data are compared to predictions of phenomenological models based on the photon structure function. It is shown that the contribution of large target photon virtualities is significant. The data presented can serve as a cross-check of the photon structure function F2γ analyses and help in refining existing parameterisations.

Recognition of functional sites in protein structures.

Science.gov (United States)

Shulman-Peleg, Alexandra; Nussinov, Ruth; Wolfson, Haim J

2004-06-04

Recognition of regions on the surface of one protein, that are similar to a binding site of another is crucial for the prediction of molecular interactions and for functional classifications. We first describe a novel method, SiteEngine, that assumes no sequence or fold similarities and is able to recognize proteins that have similar binding sites and may perform similar functions. We achieve high efficiency and speed by introducing a low-resolution surface representation via chemically important surface points, by hashing triangles of physico-chemical properties and by application of hierarchical scoring schemes for a thorough exploration of global and local similarities. We proceed to rigorously apply this method to functional site recognition in three possible ways: first, we search a given functional site on a large set of complete protein structures. Second, a potential functional site on a protein of interest is compared with known binding sites, to recognize similar features. Third, a complete protein structure is searched for the presence of an a priori unknown functional site, similar to known sites. Our method is robust and efficient enough to allow computationally demanding applications such as the first and the third. From the biological standpoint, the first application may identify secondary binding sites of drugs that may lead to side-effects. The third application finds new potential sites on the protein that may provide targets for drug design. Each of the three applications may aid in assigning a function and in classification of binding patterns. We highlight the advantages and disadvantages of each type of search, provide examples of large-scale searches of the entire Protein Data Base and make functional predictions.

Structure of BRS-invariant local functionals

International Nuclear Information System (INIS)

Brandt, F.

1993-01-01

For a large class of gauge theories a nilpotent BRS-operator s is constructed and its cohomology in the space of local functionals of the off-shell fields is shown to be isomorphic to the cohomology of s=s+d on functions f(C,T) of tensor fields T and of variables C which are constructed of the ghosts and the connection forms. The result allows general statements about the structure of invariant classical actions and anomaly cadidates whose BRS-variation vanishes off-shell. The assumptions under which the result holds are thoroughly discussed. (orig.)

Nonlinear correction to the longitudinal structure function at small x

International Nuclear Information System (INIS)

Boroun, G.R.

2010-01-01

We computed the longitudinal proton structure function F L , using the nonlinear Dokshitzer-Gribov-Lipatov-Altarelli-Parisi (NLDGLAP) evolution equation approach at small x. For the gluon distribution, the nonlinear effects are related to the longitudinal structure function. As the very small-x behavior of the gluon distribution is obtained by solving the Gribov, Levin, Ryskin, Mueller and Qiu (GLR-MQ) evolution equation with the nonlinear shadowing term incorporated, we show that the strong rise that corresponds to the linear QCD evolution equations can be tamed by screening effects. Consequently, the obtained longitudinal structure function shows a tamed growth at small x. We computed the predictions for all details of the nonlinear longitudinal structure function in the kinematic range where it has been measured by the H1 Collaboration and made comparisons with the computation by Moch, Vermaseren and Vogt at the second order with input data from the MRST QCD fit. (orig.)

Relationships between structure and function: System structure matters whether you are in a wetland or a college classroom

Science.gov (United States)

Andrews, Sarah Elizabeth

Part I of this dissertation describes two research projects I undertook to understand how structure influences function in freshwater wetlands. In the first study I tested the hypothesis that wetland structure (created versus natural) would influence function (methane cycling). Created wetlands had reduced rates of potential methane production and potential methane oxidation compared to natural wetlands; this was most likely explained by differences in edaphic factors that characterized each wetland, particularly soil moisture and soil organic matter. In the second study (Andrews et al. 2013), I tested the hypothesis that plant community structure (functional group composition, richness, presence/absence) would influence function (methane and iron cycling) in wetland mesocosms. Plant functional group richness was less important than the type of vegetation present: the presence of perennial vegetation (reeds or tussocks) led to increased rates of potential iron reduction compared to when only annual vegetation was present. Part II of this dissertation describes research I undertook to understand how structure influences function in an undergraduate soil science course. In the first study I tested the hypothesis that course structure (traditional versus studio) would influence function (student performance) in the course. Students in the studio course outperformed students in the traditional course; there was also a decrease in the fail rate. In the second study I looked at students' perspectives on their learning and experiences (function) in the studio course and asked whether students' epistemological development influenced this function. Interviews with students revealed that active learning, the integrated nature of the course, community, and variety of learning and assessment methods helped student learning. Students' epistemological development (interpreted from the Measure of Epistemological Reflection) permeated much of what they spoke about during the

Functional clustering in hippocampal cultures: relating network structure and dynamics

International Nuclear Information System (INIS)

Feldt, S; Dzakpasu, R; Olariu, E; Żochowski, M; Wang, J X; Shtrahman, E

2010-01-01

In this work we investigate the relationship between gross anatomic structural network properties, neuronal dynamics and the resultant functional structure in dissociated rat hippocampal cultures. Specifically, we studied cultures as they developed under two conditions: the first supporting glial cell growth (high glial group), and the second one inhibiting it (low glial group). We then compared structural network properties and the spatio-temporal activity patterns of the neurons. Differences in dynamics between the two groups could be linked to the impact of the glial network on the neuronal network as the cultures developed. We also implemented a recently developed algorithm called the functional clustering algorithm (FCA) to obtain the resulting functional network structure. We show that this new algorithm is useful for capturing changes in functional network structure as the networks evolve over time. The FCA detects changes in functional structure that are consistent with expected dynamical differences due to the impact of the glial network. Cultures in the high glial group show an increase in global synchronization as the cultures age, while those in the low glial group remain locally synchronized. We additionally use the FCA to quantify the amount of synchronization present in the cultures and show that the total level of synchronization in the high glial group is stronger than in the low glial group. These results indicate an interdependence between the glial and neuronal networks present in dissociated cultures

Matrix Transfer Function Design for Flexible Structures: An Application

Science.gov (United States)

Brennan, T. J.; Compito, A. V.; Doran, A. L.; Gustafson, C. L.; Wong, C. L.

1985-01-01

The application of matrix transfer function design techniques to the problem of disturbance rejection on a flexible space structure is demonstrated. The design approach is based on parameterizing a class of stabilizing compensators for the plant and formulating the design specifications as a constrained minimization problem in terms of these parameters. The solution yields a matrix transfer function representation of the compensator. A state space realization of the compensator is constructed to investigate performance and stability on the nominal and perturbed models. The application is made to the ACOSSA (Active Control of Space Structures) optical structure.

Phenomenological study of the nucleon structure functions; Etude phenomenologique des fonctions de structure du nucleon

Energy Technology Data Exchange (ETDEWEB)

Bertini, M

1995-05-12

This thesis is devoted to the study of the deep inelastic scattering. Its purpose is the development of phenomenological models describing experimental results on unpolarized (F{sub 2}) and polarized (g{sub 1}) nucleon structure functions in the wide range of the kinematical domain. Special attention is paid to the small-x behaviour of F{sub 2} and to the link between deep inelastic scattering and photoproduction process. The investigation of the Pomeron in deep inelastic scattering shows that one single Pomeron compatible with the Froissard-Martin limit can account for all the present HERA data. A phenomenological model of the proton structure function is developed, based on a two-component structure including various features expected from both perturbative quantum chromodynamics and non perturbative Regge theory. A link with the photoproduction process is provided. A detailed analysis of the perturbative components, based on the Gribov-Lipatov-Altarelli-Parisi evolution equations is presented. Taking into account the different parton distribution, this approach allows to describe data on proton and neutron structure functions, on deep inelastic neutrino scattering, and to reproduce the gluons distribution extracted by the ZEUS collaboration. The model is applied to the polarized deep inelastic scattering and the axial anomaly effect appearing both in the description of results on the spin dependent structure functions g{sup p,n,d} and in the interpretation of the nucleon spin structure is discussed. (J.S.). 260 refs., 34 figs., 8 tabs., 6 appends.

Effective field theory approach to structure functions at small xBj

International Nuclear Information System (INIS)

Nachtmann, O.

2003-01-01

We relate the structure functions of deep inelastic lepton-nucleon scattering to current-current correlation functions in a Euclidean field theory depending on a parameter r. The r-dependent Hamiltonian of the theory is P 0 -(1-r)P 3 , with P 0 the usual Hamiltonian and P 3 the third component of the momentum operator. We show that a small x Bj in the structure functions corresponds to the small r limit of the effective theory. We argue that for r→0 there is a critical regime of the theory where simple scaling relations should hold. We show that in this framework Regge behaviour of the structure functions obtained with the hard pomeron ansatz corresponds to a scaling behaviour of the matrix elements in the effective theory where the intercept of the hard pomeron appears as a critical index. Explicit expressions for various analytic continuations of the structure functions and matrix elements are given as well as path integral representations for the matrix elements in the effective theory. Our aim is to provide a framework for truly non-perturbative calculations of the structure functions at small x Bj for arbitrary Q 2 . (orig.)

Structural and Functional Plasticity in the Maternal Brain Circuitry

Science.gov (United States)

Pereira, Mariana

2016-01-01

Parenting recruits a distributed network of brain structures (and neuromodulators) that coordinates caregiving responses attuned to the young's affect, needs, and developmental stage. Many of these structures and connections undergo significant structural and functional plasticity, mediated by the interplay between maternal hormones and social…

The identification and functional annotation of RNA structures conserved in vertebrates

DEFF Research Database (Denmark)

Seemann, Ernst Stefan; Mirza, Aashiq Hussain; Hansen, Claus

2017-01-01

Structured elements of RNA molecules are essential in, e.g., RNA stabilization, localization and protein interaction, and their conservation across species suggests a common functional role. We computationally screened vertebrate genomes for Conserved RNA Structures (CRSs), leveraging structure-b......-structured counterparts. Our findings of transcribed uncharacterized regulatory regions that contain CRSs support their RNA-mediated functionality.......Structured elements of RNA molecules are essential in, e.g., RNA stabilization, localization and protein interaction, and their conservation across species suggests a common functional role. We computationally screened vertebrate genomes for Conserved RNA Structures (CRSs), leveraging structure......-based, rather than sequence-based, alignments. After careful correction for sequence identity and GC content, we predict ~516k human genomic regions containing CRSs. We find that a substantial fraction of human-mouse CRS regions (i) co-localize consistently with binding sites of the same RNA binding proteins...

Factor structure of functional state of primary school age children

Directory of Open Access Journals (Sweden)

Davidenko O.V.

2011-02-01

Full Text Available The examination of primary school children to determine the ranking of significant factors that determine the structure of their functional state depending on the level of physical health. It is shown that the main factor in the structure of the functional state of younger schoolchildren in low-and lower-middle level of physical fitness is selected morpho-functional status, which characterizes the functions of the body at rest. For children with average or above average level of physical fitness is a leading factor in physical fitness of schoolchildren.

Structure modification and functionality of whey proteins: quantitative structure-activity relationship approach.

Science.gov (United States)

Nakai, S; Li-Chan, E

1985-10-01

According to the original idea of quantitative structure-activity relationship, electric, hydrophobic, and structural parameters should be taken into consideration for elucidating functionality. Changes in these parameters are reflected in the property of protein solubility upon modification of whey proteins by heating. Although solubility is itself a functional property, it has been utilized to explain other functionalities of proteins. However, better correlations were obtained when hydrophobic parameters of the proteins were used in conjunction with solubility. Various treatments reported in the literature were applied to whey protein concentrate in an attempt to obtain whipping and gelling properties similar to those of egg white. Mapping simplex optimization was used to search for the best results. Improvement in whipping properties by pepsin hydrolysis may have been due to higher protein solubility, and good gelling properties resulting from polyphosphate treatment may have been due to an increase in exposable hydrophobicity. However, the results of angel food cake making were still unsatisfactory.

Cellular regulation of the structure and function of aortic valves

Directory of Open Access Journals (Sweden)

Ismail El-Hamamsy

2010-01-01

Full Text Available The aortic valve was long considered a passive structure that opens and closes in response to changes in transvalvular pressure. Recent evidence suggests that the aortic valve performs highly sophisticated functions as a result of its unique microscopic structure. These functions allow it to adapt to its hemodynamic and mechanical environment. Understanding the cellular and molecular mechanisms involved in normal valve physiology is essential to elucidate the mechanisms behind valve disease. We here review the structure and developmental biology of aortic valves; we examine the role of its cellular parts in regulating its function and describe potential pathophysiological and clinical implications.

Improving the precision of the structure-function relationship by considering phylogenetic context.

Directory of Open Access Journals (Sweden)

2005-06-01

Full Text Available Understanding the relationship between protein structure and function is one of the foremost challenges in post-genomic biology. Higher conservation of structure could, in principle, allow researchers to extend current limitations of annotation. However, despite significant research in the area, a precise and quantitative relationship between biochemical function and protein structure has been elusive. Attempts to draw an unambiguous link have often been complicated by pleiotropy, variable transcriptional control, and adaptations to genomic context, all of which adversely affect simple definitions of function. In this paper, I report that integrating genomic information can be used to clarify the link between protein structure and function. First, I present a novel measure of functional proximity between protein structures (F-score. Then, using F-score and other entirely automatic methods measuring structure and phylogenetic similarity, I present a three-dimensional landscape describing their inter-relationship. The result is a "well-shaped" landscape that demonstrates the added value of considering genomic context in inferring function from structural homology. A generalization of methodology presented in this paper can be used to improve the precision of annotation of genes in current and newly sequenced genomes.

Industrial entrepreneurial network: Structural and functional analysis

Science.gov (United States)

Medvedeva, M. A.; Davletbaev, R. H.; Berg, D. B.; Nazarova, J. J.; Parusheva, S. S.

2016-12-01

Structure and functioning of two model industrial entrepreneurial networks are investigated in the present paper. One of these networks is forming when implementing an integrated project and consists of eight agents, which interact with each other and external environment. The other one is obtained from the municipal economy and is based on the set of the 12 real business entities. Analysis of the networks is carried out on the basis of the matrix of mutual payments aggregated over the certain time period. The matrix is created by the methods of experimental economics. Social Network Analysis (SNA) methods and instruments were used in the present research. The set of basic structural characteristics was investigated: set of quantitative parameters such as density, diameter, clustering coefficient, different kinds of centrality, and etc. They were compared with the random Bernoulli graphs of the corresponding size and density. Discovered variations of random and entrepreneurial networks structure are explained by the peculiarities of agents functioning in production network. Separately, were identified the closed exchange circuits (cyclically closed contours of graph) forming an autopoietic (self-replicating) network pattern. The purpose of the functional analysis was to identify the contribution of the autopoietic network pattern in its gross product. It was found that the magnitude of this contribution is more than 20%. Such value allows using of the complementary currency in order to stimulate economic activity of network agents.

Puzzle Pieces: Neural Structure and Function in Prader-Willi Syndrome

Science.gov (United States)

Manning, Katherine E.; Holland, Anthony J.

2015-01-01

Prader-Willi syndrome (PWS) is a neurodevelopmental disorder of genomic imprinting, presenting with a behavioural phenotype encompassing hyperphagia, intellectual disability, social and behavioural difficulties, and propensity to psychiatric illness. Research has tended to focus on the cognitive and behavioural investigation of these features, and, with the exception of eating behaviour, the neural physiology is currently less well understood. A systematic review was undertaken to explore findings relating to neural structure and function in PWS, using search terms designed to encompass all published articles concerning both in vivo and post-mortem studies of neural structure and function in PWS. This supported the general paucity of research in this area, with many articles reporting case studies and qualitative descriptions or focusing solely on the overeating behaviour, although a number of systematic investigations were also identified. Research to date implicates a combination of subcortical and higher order structures in PWS, including those involved in processing reward, motivation, affect and higher order cognitive functions, with both anatomical and functional investigations indicating abnormalities. It appears likely that PWS involves aberrant activity across distributed neural networks. The characterisation of neural structure and function warrants both replication and further systematic study. PMID:28943631

Puzzle Pieces: Neural Structure and Function in Prader-Willi Syndrome

Directory of Open Access Journals (Sweden)

Katherine E. Manning

2015-12-01

Full Text Available Prader-Willi syndrome (PWS is a neurodevelopmental disorder of genomic imprinting, presenting with a behavioural phenotype encompassing hyperphagia, intellectual disability, social and behavioural difficulties, and propensity to psychiatric illness. Research has tended to focus on the cognitive and behavioural investigation of these features, and, with the exception of eating behaviour, the neural physiology is currently less well understood. A systematic review was undertaken to explore findings relating to neural structure and function in PWS, using search terms designed to encompass all published articles concerning both in vivo and post-mortem studies of neural structure and function in PWS. This supported the general paucity of research in this area, with many articles reporting case studies and qualitative descriptions or focusing solely on the overeating behaviour, although a number of systematic investigations were also identified. Research to date implicates a combination of subcortical and higher order structures in PWS, including those involved in processing reward, motivation, affect and higher order cognitive functions, with both anatomical and functional investigations indicating abnormalities. It appears likely that PWS involves aberrant activity across distributed neural networks. The characterisation of neural structure and function warrants both replication and further systematic study.

Renormalized sum rules for structure functions of heavy meson decays

International Nuclear Information System (INIS)

Grozin, A.G.; Korchemsky, G.P.

1996-01-01

We consider the properties of the structure functions of inclusive heavy meson decays B→X c and treat the c quark mass as a free parameter. We show that in two extreme cases of heavy and light c quarks the structure functions of heavy-heavy and heavy-light transitions are given by a Fourier transform of the matrix elements of Wilson lines containing a timelike and a lightlike segment, correspondingly. Using the renormalization properties of Wilson lines we find the dependence of the structure functions on the factorization scale, the structure function of the heavy-heavy transition is renormalized multiplicatively, while that of the heavy-light transition obeys the GLAP-type evolution equation. We propose a generalization of the sum rules for the moments of the structure functions (Bjorken, Voloshin, and the open-quote open-quote third close-quote close-quote sum rules) with a soft exponential factorization cutoff, which correctly incorporates both perturbative and nonperturbative effects. We analyze nonperturbative corrections by first considering infrared renormalon contributions to the Wilson lines. Uncertainties induced by the leading renormalon pole at u=1/2 are exactly canceled by a similar uncertainty in the heavy quark pole mass. The leading nonperturbative corrections associated with the next renormalon at u=1 are parametrized by the matrix element μ π 2 which is proportional to the heavy quark kinetic energy. copyright 1996 The American Physical Society

Multiscale Persistent Functions for Biomolecular Structure Characterization

Energy Technology Data Exchange (ETDEWEB)

Xia, Kelin [Nanyang Technological University (Singapore). Division of Mathematical Sciences, School of Physical, Mathematical Sciences and School of Biological Sciences; Li, Zhiming [Central China Normal University, Wuhan (China). Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics; Mu, Lin [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Computer Science and Mathematics Division

2017-11-02

Here in this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions (MRFs) with persistent homology analysis, so as to construct a series of multiscale persistent functions, particularly multiscale persistent entropies, for structure characterization. To clarify the fundamental idea of our method, the multiscale persistent entropy (MPE) model is discussed in great detail. Mathematically, unlike the previous persistent entropy (Chintakunta et al. in Pattern Recognit 48(2):391–401, 2015; Merelli et al. in Entropy 17(10):6872–6892, 2015; Rucco et al. in: Proceedings of ECCS 2014, Springer, pp 117–128, 2016), a special resolution parameter is incorporated into our model. Various scales can be achieved by tuning its value. Physically, our MPE can be used in conformational entropy evaluation. More specifically, it is found that our method incorporates in it a natural classification scheme. This is achieved through a density filtration of an MRF built from angular distributions. To further validate our model, a systematical comparison with the traditional entropy evaluation model is done. Additionally, it is found that our model is able to preserve the intrinsic topological features of biomolecular data much better than traditional approaches, particularly for resolutions in the intermediate range. Moreover, by comparing with traditional entropies from various grid sizes, bond angle-based methods and a persistent homology-based support vector machine method (Cang et al. in Mol Based Math Biol 3:140–162, 2015), we find that our MPE method gives the best results in terms of average true positive rate in a classic protein structure classification test. More interestingly, all-alpha and all-beta protein classes can be clearly separated from each other with zero error only in our model. Finally, a special protein structure index (PSI) is proposed, for the first

Protein Function Prediction Based on Sequence and Structure Information

KAUST Repository

Smaili, Fatima Z.

2016-05-25

The number of available protein sequences in public databases is increasing exponentially. However, a significant fraction of these sequences lack functional annotation which is essential to our understanding of how biological systems and processes operate. In this master thesis project, we worked on inferring protein functions based on the primary protein sequence. In the approach we follow, 3D models are first constructed using I-TASSER. Functions are then deduced by structurally matching these predicted models, using global and local similarities, through three independent enzyme commission (EC) and gene ontology (GO) function libraries. The method was tested on 250 “hard” proteins, which lack homologous templates in both structure and function libraries. The results show that this method outperforms the conventional prediction methods based on sequence similarity or threading. Additionally, our method could be improved even further by incorporating protein-protein interaction information. Overall, the method we use provides an efficient approach for automated functional annotation of non-homologous proteins, starting from their sequence.

DMPD: Structural and functional analyses of bacterial lipopolysaccharides. [Dynamic Macrophage Pathway CSML Database

Lifescience Database Archive (English)

Full Text Available 12106784 Structural and functional analyses of bacterial lipopolysaccharides. Carof...html) (.csml) Show Structural and functional analyses of bacterial lipopolysaccharides. PubmedID 12106784 Title Structural and functi...onal analyses of bacterial lipopolysaccharides. Authors

From Sequence and Forces to Structure, Function and Evolution of Intrinsically Disordered Proteins

Science.gov (United States)

Forman-Kay, Julie D.; Mittag, Tanja

2015-01-01

Intrinsically disordered proteins (IDPs), which lack persistent structure, are a challenge to structural biology due to the inapplicability of standard methods for characterization of folded proteins as well as their deviation from the dominant structure/function paradigm. Their widespread presence and involvement in biological function, however, has spurred the growing acceptance of the importance of IDPs and the development of new tools for studying their structure, dynamics and function. The interplay of folded and disordered domains or regions for function and the existence of a continuum of protein states with respect to conformational energetics, motional timescales and compactness is shaping a unified understanding of structure-dynamics-disorder/function relationships. On the 20th anniversary of this journal, Structure, we provide a historical perspective on the investigation of IDPs and summarize the sequence features and physical forces that underlie their unique structural, functional and evolutionary properties. PMID:24010708

The Structure and Dark Halo Core Properties of Dwarf Spheroidal Galaxies

Science.gov (United States)

Burkert, A.

2015-08-01

The structure and dark matter halo core properties of dwarf spheroidal galaxies (dSphs) are investigated. A double-isothermal (DIS) model of an isothermal, non-self-gravitating stellar system embedded in an isothermal dark halo core provides an excellent fit to the various observed stellar surface density distributions. The stellar core scale length a* is sensitive to the central dark matter density ρ0,d. The maximum stellar radius traces the dark halo core radius {r}c,d. The concentration c* of the stellar system, determined by a King profile fit, depends on the ratio of the stellar-to-dark-matter velocity dispersion {σ }*/{σ }d. Simple empirical relationships are derived that allow us to calculate the dark halo core parameters ρ0,d, {r}c,d, and σd given the observable stellar quantities σ*, a*, and c*. The DIS model is applied to the Milky Way’s dSphs. All dSphs closely follow the same universal dark halo scaling relations {ρ }0,d× {r}c,d={75}-45+85 M⊙ pc-2 that characterize the cores of more massive galaxies over a large range in masses. The dark halo core mass is a strong function of core radius, {M}c,d˜ {r}c,d2. Inside a fixed radius of ˜400 pc the total dark matter mass is, however, roughly constant with {M}d=2.6+/- 1.4× {10}7 M⊙, although outliers are expected. The dark halo core densities of the Galaxy’s dSphs are very high, with {ρ }0,d ≈ 0.2 M⊙ pc-3. dSphs should therefore be tidally undisturbed. Evidence for tidal effects might then provide a serious challenge for the CDM scenario.

Psychedelics Promote Structural and Functional Neural Plasticity.

Science.gov (United States)

Ly, Calvin; Greb, Alexandra C; Cameron, Lindsay P; Wong, Jonathan M; Barragan, Eden V; Wilson, Paige C; Burbach, Kyle F; Soltanzadeh Zarandi, Sina; Sood, Alexander; Paddy, Michael R; Duim, Whitney C; Dennis, Megan Y; McAllister, A Kimberley; Ori-McKenney, Kassandra M; Gray, John A; Olson, David E

2018-06-12

Atrophy of neurons in the prefrontal cortex (PFC) plays a key role in the pathophysiology of depression and related disorders. The ability to promote both structural and functional plasticity in the PFC has been hypothesized to underlie the fast-acting antidepressant properties of the dissociative anesthetic ketamine. Here, we report that, like ketamine, serotonergic psychedelics are capable of robustly increasing neuritogenesis and/or spinogenesis both in vitro and in vivo. These changes in neuronal structure are accompanied by increased synapse number and function, as measured by fluorescence microscopy and electrophysiology. The structural changes induced by psychedelics appear to result from stimulation of the TrkB, mTOR, and 5-HT2A signaling pathways and could possibly explain the clinical effectiveness of these compounds. Our results underscore the therapeutic potential of psychedelics and, importantly, identify several lead scaffolds for medicinal chemistry efforts focused on developing plasticity-promoting compounds as safe, effective, and fast-acting treatments for depression and related disorders. Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

The structure and function of presynaptic endosomes

Energy Technology Data Exchange (ETDEWEB)

Jähne, Sebastian, E-mail: sebastian.jaehne1@stud.uni-goettingen.de [Department of Neuro- and Sensory Physiology, University of Göttingen Medical Center, Cluster of Excellence Nanoscale Microscopy and Molecular Physiology of the Brain, Humboldtallee 23, 37073 Göttingen (Germany); International Max Planck Research School for Neurosciences, 37077 Göttingen (Germany); Rizzoli, Silvio O. [Department of Neuro- and Sensory Physiology, University of Göttingen Medical Center, Cluster of Excellence Nanoscale Microscopy and Molecular Physiology of the Brain, Humboldtallee 23, 37073 Göttingen (Germany); Helm, Martin S., E-mail: martin.helm@med.uni-goettingen.de [Department of Neuro- and Sensory Physiology, University of Göttingen Medical Center, Cluster of Excellence Nanoscale Microscopy and Molecular Physiology of the Brain, Humboldtallee 23, 37073 Göttingen (Germany); International Max Planck Research School for Molecular Biology, 37077 Göttingen (Germany)

2015-07-15

The function of endosomes and of endosome-like structures in the presynaptic compartment is still controversial. This is in part due to the absence of a consensus on definitions and markers for these compartments. Synaptic endosomes are sometimes seen as stable organelles, permanently present in the synapse. Alternatively, they are seen as short-lived intermediates in synaptic vesicle recycling, arising from the endocytosis of large vesicles from the plasma membrane, or from homotypic fusion of small vesicles. In addition, the potential function of the endosome is largely unknown in the synapse. Some groups have proposed that the endosome is involved in the sorting of synaptic vesicle proteins, albeit others have produced data that deny this possibility. In this review, we present the existing evidence for synaptic endosomes, we discuss their potential functions, and we highlight frequent technical pitfalls in the analysis of this elusive compartment. We also sketch a roadmap to definitely determine the role of synaptic endosomes for the synaptic vesicle cycle. Finally, we propose a common definition of synaptic endosome-like structures.

The structure and function of presynaptic endosomes

International Nuclear Information System (INIS)

Jähne, Sebastian; Rizzoli, Silvio O.; Helm, Martin S.

2015-01-01

The function of endosomes and of endosome-like structures in the presynaptic compartment is still controversial. This is in part due to the absence of a consensus on definitions and markers for these compartments. Synaptic endosomes are sometimes seen as stable organelles, permanently present in the synapse. Alternatively, they are seen as short-lived intermediates in synaptic vesicle recycling, arising from the endocytosis of large vesicles from the plasma membrane, or from homotypic fusion of small vesicles. In addition, the potential function of the endosome is largely unknown in the synapse. Some groups have proposed that the endosome is involved in the sorting of synaptic vesicle proteins, albeit others have produced data that deny this possibility. In this review, we present the existing evidence for synaptic endosomes, we discuss their potential functions, and we highlight frequent technical pitfalls in the analysis of this elusive compartment. We also sketch a roadmap to definitely determine the role of synaptic endosomes for the synaptic vesicle cycle. Finally, we propose a common definition of synaptic endosome-like structures

Normal central retinal function and structure preserved in retinitis pigmentosa.

Science.gov (United States)

Jacobson, Samuel G; Roman, Alejandro J; Aleman, Tomas S; Sumaroka, Alexander; Herrera, Waldo; Windsor, Elizabeth A M; Atkinson, Lori A; Schwartz, Sharon B; Steinberg, Janet D; Cideciyan, Artur V

2010-02-01

To determine whether normal function and structure, as recently found in forms of Usher syndrome, also occur in a population of patients with nonsyndromic retinitis pigmentosa (RP). Patients with simplex, multiplex, or autosomal recessive RP (n = 238; ages 9-82 years) were studied with static chromatic perimetry. A subset was evaluated with optical coherence tomography (OCT). Co-localized visual sensitivity and photoreceptor nuclear layer thickness were measured across the central retina to establish the relationship of function and structure. Comparisons were made to patients with Usher syndrome (n = 83, ages 10-69 years). Cross-sectional psychophysical data identified patients with RP who had normal rod- and cone-mediated function in the central retina. There were two other patterns with greater dysfunction, and longitudinal data confirmed that progression can occur from normal rod and cone function to cone-only central islands. The retinal extent of normal laminar architecture by OCT corresponded to the extent of normal visual function in patients with RP. Central retinal preservation of normal function and structure did not show a relationship with age or retained peripheral function. Usher syndrome results were like those in nonsyndromic RP. Regional disease variation is a well-known finding in RP. Unexpected was the observation that patients with presumed recessive RP can have regions with functionally and structurally normal retina. Such patients will require special consideration in future clinical trials of either focal or systemic treatment. Whether there is a common molecular mechanism shared by forms of RP with normal regions of retina warrants further study.

Soil-borne microbial functional structure across different land uses.

Science.gov (United States)

Kuramae, Eiko E; Zhou, Jizhong Z; Kowalchuk, George A; van Veen, Johannes A

2014-01-01

Land use change alters the structure and composition of microbial communities. However, the links between environmental factors and microbial functions are not well understood. Here we interrogated the functional structure of soil microbial communities across different land uses. In a multivariate regression tree analysis of soil physicochemical properties and genes detected by functional microarrays, the main factor that explained the different microbial community functional structures was C : N ratio. C : N ratio showed a significant positive correlation with clay and soil pH. Fields with low C : N ratio had an overrepresentation of genes for carbon degradation, carbon fixation, metal reductase, and organic remediation categories, while fields with high C : N ratio had an overrepresentation of genes encoding dissimilatory sulfate reductase, methane oxidation, nitrification, and nitrogen fixation. The most abundant genes related to carbon degradation comprised bacterial and fungal cellulases; bacterial and fungal chitinases; fungal laccases; and bacterial, fungal, and oomycete polygalacturonases. The high number of genes related to organic remediation was probably driven by high phosphate content, while the high number of genes for nitrification was probably explained by high total nitrogen content. The functional gene diversity found in different soils did not group the sites accordingly to land management. Rather, the soil factors, C : N ratio, phosphate, and total N, were the main factors driving the differences in functional genes across the fields examined.

Toward a standardized structural-functional group connectome in MNI space.

Science.gov (United States)

Horn, Andreas; Blankenburg, Felix

2016-01-01

The analysis of the structural architecture of the human brain in terms of connectivity between its subregions has provided profound insights into its underlying functional organization and has coined the concept of the "connectome", a structural description of the elements forming the human brain and the connections among them. Here, as a proof of concept, we introduce a novel group connectome in standard space based on a large sample of 169 subjects from the Enhanced Nathan Kline Institute-Rockland Sample (eNKI-RS). Whole brain structural connectomes of each subject were estimated with a global tracking approach, and the resulting fiber tracts were warped into standard stereotactic (MNI) space using DARTEL. Employing this group connectome, the results of published tracking studies (i.e., the JHU white matter and Oxford thalamic connectivity atlas) could be largely reproduced directly within MNI space. In a second analysis, a study that examined structural connectivity between regions of a functional network, namely the default mode network, was reproduced. Voxel-wise structural centrality was then calculated and compared to others' findings. Furthermore, including additional resting-state fMRI data from the same subjects, structural and functional connectivity matrices between approximately forty thousand nodes of the brain were calculated. This was done to estimate structure-function agreement indices of voxel-wise whole brain connectivity. Taken together, the combination of a novel whole brain fiber tracking approach and an advanced normalization method led to a group connectome that allowed (at least heuristically) performing fiber tracking directly within MNI space. Such an approach may be used for various purposes like the analysis of structural connectivity and modeling experiments that aim at studying the structure-function relationship of the human connectome. Moreover, it may even represent a first step toward a standard DTI template of the human brain

Structure of β-decay strength functions

International Nuclear Information System (INIS)

Naumov, Y.V.; Bykov, A.A.; Izosimov, I.N.

1983-01-01

The experimental and theoretical studies on the structure of the Gamow--Teller β-decay strength functions are reviewed. Also considered are processes such as M1 γ decay of analog states, the emission of delayed protons, neutrons, and α particles, delayed fission, and the (p, n) reaction at proton energies 100--200 MeV. The results of measurements of the strength functions by γ-ray total absorption are analyzed. It is shown that the β + decay of nuclei far from the stability band exhibits a new type of collective charge-exchange excitation: Gamow--Teller resonance with μ/sub tau/ = +1

QCD analysis of structure functions in terms of Jacobi polynomials

International Nuclear Information System (INIS)

Krivokhizhin, V.G.; Kurlovich, S.P.; Savin, I.A.; Sidorov, A.V.; Skachkov, N.B.; Sanadze, V.V.

1987-01-01

A new method of QCD-analysis of singlet and nonsinglet structure functions based on their expansion in orthogonal Jacobi polynomials is proposed. An accuracy of the method is studied and its application is demonstrated using the structure function F 2 (x,Q 2 ) obtained by the EMC Collaboration from measurements with an iron target. (orig.)

Template-assisted growth of nano structured functional materials

International Nuclear Information System (INIS)

Ying, K.K.; Nur Ubaidah Saidin; Khuan, N.I.; Suhaila Hani Ilias; Foo, C.T.

2012-01-01

Template-assisted growth is an important nano electrochemical deposition technique for synthesizing one-dimensional (1-D) nano structures with uniformly well-controlled shapes and sizes. A good template with well-defined dimensions is imperative for realizing this task. Porous anodic alumina (PAA) has been a favorable candidate for this purpose as it can be tailor-made with precise pore geometries, such as pore length and diameter as well as inter-pore distances, via the anodization of pure aluminium. This paper reports the fabrication of PAA templates and electrochemical synthesis of functional nano structures in the form of nano wires using PAA templates as scaffolds. Axial heterostructure and homogeneous nano wires formed by engineering materials configuration via composition and/ or layer thickness variations were fabricated for different functionalities. X-ray diffraction and imaging techniques were used to alucidate the microstructures, morphologies and chemical compositions of the nano wires produced. Due to their large surface area-to-volume ratios, and therefore high sensitivities, these functional nano structures have useful applications as critical components in nano sensor devices and various areas of nano technology. Potential applications include as hydrogen gas sensors in nuclear power plant for monitoring structural integrity of reactor components and containment building, as well as environmental monitoring of air pollution and leakages of toxic gases and chemicals. (Author)

Density functional study of molecular interactions in secondary structures of proteins.

Science.gov (United States)

Takano, Yu; Kusaka, Ayumi; Nakamura, Haruki

2016-01-01

Proteins play diverse and vital roles in biology, which are dominated by their three-dimensional structures. The three-dimensional structure of a protein determines its functions and chemical properties. Protein secondary structures, including α-helices and β-sheets, are key components of the protein architecture. Molecular interactions, in particular hydrogen bonds, play significant roles in the formation of protein secondary structures. Precise and quantitative estimations of these interactions are required to understand the principles underlying the formation of three-dimensional protein structures. In the present study, we have investigated the molecular interactions in α-helices and β-sheets, using ab initio wave function-based methods, the Hartree-Fock method (HF) and the second-order Møller-Plesset perturbation theory (MP2), density functional theory, and molecular mechanics. The characteristic interactions essential for forming the secondary structures are discussed quantitatively.

Geometrical comparison of two protein structures using Wigner-D functions.

Science.gov (United States)

Saberi Fathi, S M; White, Diana T; Tuszynski, Jack A

2014-10-01

In this article, we develop a quantitative comparison method for two arbitrary protein structures. This method uses a root-mean-square deviation characterization and employs a series expansion of the protein's shape function in terms of the Wigner-D functions to define a new criterion, which is called a "similarity value." We further demonstrate that the expansion coefficients for the shape function obtained with the help of the Wigner-D functions correspond to structure factors. Our method addresses the common problem of comparing two proteins with different numbers of atoms. We illustrate it with a worked example. © 2014 Wiley Periodicals, Inc.

A knowledge representation view on biomedical structure and function.

Science.gov (United States)

Schulz, Stefan; Hahn, Udo

2002-01-01

In biomedical ontologies, structural and functional considerations are of outstanding importance, and concepts which belong to these two categories are highly interdependent. At the representational level both axes must be clearly kept separate in order to support disciplined ontology engineering. Furthermore, the biaxial organization of physical structure (both by a taxonomic and partonomic order) entails intricate patterns of inference. We here propose a layered encoding of taxonomic, partonomic and functional aspects of biomedical concepts using description logics. PMID:12463912

CYCLOPHILIN A: STRUCTURE AND FUNCTIONS

Directory of Open Access Journals (Sweden)

A. A. Kalinina

2017-01-01

Full Text Available Cyclophilins belong to a large family of ancient conservative proteins with peptidyl-prolyl-cis-trans isomerase activity. The main member of this family – cyclophilin A – was discovered as an intracellular ligand for cyclosporine A. Further investigations revealed a wide range of functions of cyclophilin A. Cyclophilin A is involved in T-cell signaling, it takes part in folding, assembly and intracellular transport of proteins, as well as acts as an antioxidant. Different cell types secrete cyclophilin A under infection or oxidative stress. Cyclophilin A is one of the main factors involved in inflammation and pathogenesis of autoimmune, cardiovascular and other diseases. This protein is thought to take part in tumor progression. In this review we describe the structure of cyclophilin A and its main known functions in health and disease.

Structure and functions of organizational trust in employees’ notions

Directory of Open Access Journals (Sweden)

Marina M. Zavartseva

2016-06-01

Full Text Available This article investigates the structure and functions of organizational trust, examining the content of employees’ subjective notions about organizational trust and it’s role in organization’s functioning. The combination of direct (R.B.Shaw’s trust assessment survey and indirect (the semantic differential scale; the contentanalysis of the checklist of trust structural components methods was used. Using data on 378 employees of different organizations (commercial, medical, educational we distinguished subjective images of organization in groups with opposite estimation of organizational trust’s level. The study indicated that organizational trust’s structure is not linear, and exposed two main functions of high level of organizational trust – idealization and positive emotional estimation both of actual organization (that is currently place of employment. Obtained data provide basis for express-diagnostic of trust in organization and might be used for design of psychological training aiming high organization’s efficacy.

Data Presentation Structures in Specialised Dictionaries: Law Dictionaries with Communicative Functions

DEFF Research Database (Denmark)

Nielsen, Sandro

2015-01-01

data stand out, lexicographers should prioritize functional data that are directly related to and support the function(s) of dictionaries on a need-to-have/nice-to have basis, because data presentation structures with functional focus may better help users achieve their intended goals, i.e. finding......Theoretical lexicographers have developed a range of elaborate structures to describe the arrangement of data inside dictionaries, in particular in dictionary articles. However, most of these structures have been developed on the basis of detailed analyses of print dictionaries and relatively...... little has been said about the arrangement of data in e-dictionaries. The relevant data types are lexicographical data providing help concerning the function(s) and use of dictionaries on search results pages. In order to create a visual hierarchy on screen that makes the most important search result...

Transparent wood for functional and structural applications

Science.gov (United States)

Li, Yuanyuan; Fu, Qiliang; Yang, Xuan; Berglund, Lars

2017-12-01

Optically transparent wood combines mechanical performance with optical functionalities is an emerging candidate for applications in smart buildings and structural optics and photonics. The present review summarizes transparent wood preparation methods, optical and mechanical performance, and functionalization routes, and discusses potential applications. The various challenges are discussed for the purpose of improved performance, scaled-up production and realization of advanced applications. This article is part of a discussion meeting issue `New horizons for cellulose nanotechnology'.

Less-structured time in children's daily lives predicts self-directed executive functioning.

Science.gov (United States)

Barker, Jane E; Semenov, Andrei D; Michaelson, Laura; Provan, Lindsay S; Snyder, Hannah R; Munakata, Yuko

2014-01-01

Executive functions (EFs) in childhood predict important life outcomes. Thus, there is great interest in attempts to improve EFs early in life. Many interventions are led by trained adults, including structured training activities in the lab, and less-structured activities implemented in schools. Such programs have yielded gains in children's externally-driven executive functioning, where they are instructed on what goal-directed actions to carry out and when. However, it is less clear how children's experiences relate to their development of self-directed executive functioning, where they must determine on their own what goal-directed actions to carry out and when. We hypothesized that time spent in less-structured activities would give children opportunities to practice self-directed executive functioning, and lead to benefits. To investigate this possibility, we collected information from parents about their 6-7 year-old children's daily, annual, and typical schedules. We categorized children's activities as "structured" or "less-structured" based on categorization schemes from prior studies on child leisure time use. We assessed children's self-directed executive functioning using a well-established verbal fluency task, in which children generate members of a category and can decide on their own when to switch from one subcategory to another. The more time that children spent in less-structured activities, the better their self-directed executive functioning. The opposite was true of structured activities, which predicted poorer self-directed executive functioning. These relationships were robust (holding across increasingly strict classifications of structured and less-structured time) and specific (time use did not predict externally-driven executive functioning). We discuss implications, caveats, and ways in which potential interpretations can be distinguished in future work, to advance an understanding of this fundamental aspect of growing up.

Climate extremes drive changes in functional community structure.

Science.gov (United States)

Boucek, Ross E; Rehage, Jennifer S

2014-06-01

The response of communities to climate extremes can be quite variable. Much of this variation has been attributed to differences in community-specific functional trait diversity, as well as community composition. Yet, few if any studies have explicitly tested the response of the functional trait structure of communities following climate extremes (CEs). Recently in South Florida, two independent, but sequential potential CEs took place, a 2010 cold front, followed by a 2011 drought, both of which had profound impacts on a subtropical estuarine fish community. These CEs provided an opportunity to test whether the structure of South Florida fish communities following each extreme was a result of species-specific differences in functional traits. From historical temperature (1927-2012) and freshwater inflows records into the estuary (1955-2012), we determined that the cold front was a statistically extreme disturbance, while the drought was not, but rather a decadal rare disturbance. The two disturbances predictably affected different parts of functional community structure and thus different component species. The cold front virtually eliminated tropical species, including large-bodied snook, mojarra species, nonnative cichlids, and striped mullet, while having little affect on temperate fishes. Likewise, the drought severely impacted freshwater fishes including Florida gar, bowfin, and two centrarchids, with little effect on euryhaline species. Our findings illustrate the ability of this approach to predict and detect both the filtering effects of different types of disturbances and the implications of the resulting changes in community structure. Further, we highlight the value of this approach to developing predictive frameworks for better understanding community responses to global change. © 2014 John Wiley & Sons Ltd.

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures.

Science.gov (United States)

Wiebe, Nicholas J P; Meyer, Irmtraud M

2010-06-24

The prediction of functional RNA structures has attracted increased interest, as it allows us to study the potential functional roles of many genes. RNA structure prediction methods, however, assume that there is a unique functional RNA structure and also do not predict functional features required for in vivo folding. In order to understand how functional RNA structures form in vivo, we require sophisticated experiments or reliable prediction methods. So far, there exist only a few, experimentally validated transient RNA structures. On the computational side, there exist several computer programs which aim to predict the co-transcriptional folding pathway in vivo, but these make a range of simplifying assumptions and do not capture all features known to influence RNA folding in vivo. We want to investigate if evolutionarily related RNA genes fold in a similar way in vivo. To this end, we have developed a new computational method, Transat, which detects conserved helices of high statistical significance. We introduce the method, present a comprehensive performance evaluation and show that Transat is able to predict the structural features of known reference structures including pseudo-knotted ones as well as those of known alternative structural configurations. Transat can also identify unstructured sub-sequences bound by other molecules and provides evidence for new helices which may define folding pathways, supporting the notion that homologous RNA sequence not only assume a similar reference RNA structure, but also fold similarly. Finally, we show that the structural features predicted by Transat differ from those assuming thermodynamic equilibrium. Unlike the existing methods for predicting folding pathways, our method works in a comparative way. This has the disadvantage of not being able to predict features as function of time, but has the considerable advantage of highlighting conserved features and of not requiring a detailed knowledge of the cellular

The ratio of structure functions for the neutron and the proton

International Nuclear Information System (INIS)

Ballintijn, M.K.

1994-01-01

The subject of this thesis is the ratio of the structure functions F 2 of the deuteron and the proton. The structure function ratio is measured by the NMC with high precision due to a dedicated target setup. In this thesis the analysis is presented of the data taken in 1989, which were obtained using incident muon energies of 120, 200 and 280 GeV. These data complement the results from earlier measurements performed in 1986 and 1987 which were obtained at 90 and 280 GeV incident muon energy. The newly determined structure function ratio, in a slightly extended range of the scaling parameter x, is compared to the previous one and is found to be in good agreement. All data are combined to give the most accurate determination of the structure function ratio to date. The results are used to determine the dependence of the structure function ratio on the value of Q 2 , the scale at which the nucleon is probed. Finally, the structure function ratios obtained at four different incident muon energies separately, are used to determine the difference R d -R p , where R is the ratio of cross sections for the absorption of longitudinally and transversely polarized virtual photons. The difference in R for the deuteron and the proton is related to differences in the gluon distribution. The result is compatible with a gluon distribution that is identical for the deuteron and the proton. The degree of equality of R d and R p is a measure for the correctness of the procedure to extract structure function ratios. The present result is R d -R p =0.02±0.02 and hence compatible with zero. (orig.)

The gluon contribution to polarised nucleon structure functions

International Nuclear Information System (INIS)

Ross, G.G.; Roberts, R.G.

1990-08-01

As with all parton distributions in quantum chromodynamics (QCD) the separation of polarised nucleon structure functions into gluon and quark contributions must be specified. We consider a definition of the gluon contribution to polarised nucleon structure functions based on exclusive processes which is explicitly gauge invariant, has no regularisation ambiguities, is insensitive to infrared singularities and can be related to other polarised scattering processes. We discuss the relationship of this gluon definition to others that have recently been used and to the estimates that have been made of the gluon contribution using current algebra and other methods. A quantitative analysis of the structure function g 1 (x,Q 2 ) for polarised deep inelastic scattering is carried out, with the aim of examining the importance of the gluon contribution. Using the positivity of parton distributions the magnitude of Δg(x,Q 2 ) is constrained by a realistic estimate of the unpolarised glue. With the appropriate choice of the hard scattering cross-section, Δσ γg , we find that even with a maximally polarised glue (for x > 0.1), some polarised strange quark contribution is still needed by the data of the EMC. (author)

Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins

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Vassilev Boris

2010-04-01

Full Text Available Abstract Background A large proportion of an organism's genome encodes for membrane proteins. Membrane proteins are important for many cellular processes, and several diseases can be linked to mutations in them. With the tremendous growth of sequence data, there is an increasing need to reliably identify membrane proteins from sequence, to functionally annotate them, and to correctly predict their topology. Results We introduce a technique called structural fragment clustering, which learns sequential motifs from 3D structural fragments. From over 500,000 fragments, we obtain 213 statistically significant, non-redundant, and novel motifs that are highly specific to α-helical transmembrane proteins. From these 213 motifs, 58 of them were assigned to function and checked in the scientific literature for a biological assessment. Seventy percent of the motifs are found in co-factor, ligand, and ion binding sites, 30% at protein interaction interfaces, and 12% bind specific lipids such as glycerol or cardiolipins. The vast majority of motifs (94% appear across evolutionarily unrelated families, highlighting the modularity of functional design in membrane proteins. We describe three novel motifs in detail: (1 a dimer interface motif found in voltage-gated chloride channels, (2 a proton transfer motif found in heme-copper oxidases, and (3 a convergently evolved interface helix motif found in an aspartate symporter, a serine protease, and cytochrome b. Conclusions Our findings suggest that functional modules exist in membrane proteins, and that they occur in completely different evolutionary contexts and cover different binding sites. Structural fragment clustering allows us to link sequence motifs to function through clusters of structural fragments. The sequence motifs can be applied to identify and characterize membrane proteins in novel genomes.

Long-period structures in gold-copper alloys; Structures a longues periodes dans les alliages or-cuivre

Energy Technology Data Exchange (ETDEWEB)

Jehanno, G [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1965-07-01

We first proceed to reevaluation of the gold-copper equilibrium diagram for alloys between Au{sub 20}Cu{sub 80} and Au{sub 65}Cu{sub 35}. The identification of the various phases was performed by X-rays diffraction on quenched polycrystalline samples. We next study the structure of the phase AuCuII. X-ray data collected from bulk single crystals show that this long-period structure must be described with the help of two correlated periodic functions: an 'order function' and a 'displacement function'. The 'order function' conciliates the non-integer value of the period with its rigorous definition. The 'displacement function' accounts for the dis-symmetries of the observed intensities for the antiphase homologous reflections as the appearance of satellites around the fundamental reflections. These two functions are remarkably well defined at long distance in carefully annealed samples and, in some conditions, can be obtained independently. We observe that the improvement of the degree of order increases the 'modulation of position'. In the case of non stoichiometric alloys, the excess of gold atoms (gold rich alloys) is distributed at random whereas the excess of copper (copper rich alloys) is distributed in a preferential manner close to the antiphase boundaries. (author) [French] Nous procedons, tout d'abord, a une reevaluation du diagramme d'equilibre des alliages or-cuivre compris entre Au{sub 20}Cu{sub 80} et Au{sub 65}Cu{sub 35}. L'identification des differentes phases s'est faite par diffraction de rayons X sur des echantillons polycristallins trempes. Nous etudions ensuite, aux rayons X, la structure de la phase AuCuII. Les donnees rassemblees sur monocristaux massifs indiquent que cette structure a longue periode doit etre decrite a l'aide de deux fonctions periodiques correlees: une fonction d'ordre et une fonction de deplacement des atomes. La fonction d'ordre concilie le caractere non entier de la periode avec sa rigoureuse definition. La fonction de

Quark-hadron duality of nucleon spin structure function

International Nuclear Information System (INIS)

Dong, Y.B.

2005-01-01

Bloom-Gilman quark-hadron duality of nuclear spin structure function is studied by comparing the integral of g 1 from perturbative QCD prediction in the scaling region to the moment of g 1 in the resonance region. The spin structure function in the resonance region is estimated by the parametrization forms of non-resonance background and of resonance contributions. The uncertainties of our calculations due to those parametrization forms are discussed. Moreover, the effect of the Δ(1232)-resonance in the first resonance region and the role of the resonances in the second resonance region are explicitly shown. Elastic peak contribution to the duality is also analyzed. (orig.)

Proteins with Novel Structure, Function and Dynamics

Science.gov (United States)

Pohorille, Andrew

2014-01-01

Recently, a small enzyme that ligates two RNA fragments with the rate of 10(exp 6) above background was evolved in vitro (Seelig and Szostak, Nature 448:828-831, 2007). This enzyme does not resemble any contemporary protein (Chao et al., Nature Chem. Biol. 9:81-83, 2013). It consists of a dynamic, catalytic loop, a small, rigid core containing two zinc ions coordinated by neighboring amino acids, and two highly flexible tails that might be unimportant for protein function. In contrast to other proteins, this enzyme does not contain ordered secondary structure elements, such as alpha-helix or beta-sheet. The loop is kept together by just two interactions of a charged residue and a histidine with a zinc ion, which they coordinate on the opposite side of the loop. Such structure appears to be very fragile. Surprisingly, computer simulations indicate otherwise. As the coordinating, charged residue is mutated to alanine, another, nearby charged residue takes its place, thus keeping the structure nearly intact. If this residue is also substituted by alanine a salt bridge involving two other, charged residues on the opposite sides of the loop keeps the loop in place. These adjustments are facilitated by high flexibility of the protein. Computational predictions have been confirmed experimentally, as both mutants retain full activity and overall structure. These results challenge our notions about what is required for protein activity and about the relationship between protein dynamics, stability and robustness. We hypothesize that small, highly dynamic proteins could be both active and fault tolerant in ways that many other proteins are not, i.e. they can adjust to retain their structure and activity even if subjected to mutations in structurally critical regions. This opens the doors for designing proteins with novel functions, structures and dynamics that have not been yet considered.

Conformation-independent structural comparison of macromolecules with ProSMART

International Nuclear Information System (INIS)

Nicholls, Robert A.; Fischer, Marcus; McNicholas, Stuart; Murshudov, Garib N.

2014-01-01

The Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed to allow local comparative structural analyses independent of the global conformations and sequence homology of the compared macromolecules. This allows quick and intuitive visualization of the conservation of backbone and side-chain conformations, providing complementary information to existing methods. The identification and exploration of (dis)similarities between macromolecular structures can help to gain biological insight, for instance when visualizing or quantifying the response of a protein to ligand binding. Obtaining a residue alignment between compared structures is often a prerequisite for such comparative analysis. If the conformational change of the protein is dramatic, conventional alignment methods may struggle to provide an intuitive solution for straightforward analysis. To make such analyses more accessible, the Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed, which achieves a conformation-independent structural alignment, as well as providing such additional functionalities as the generation of restraints for use in the refinement of macromolecular models. Sensible comparison of protein (or DNA/RNA) structures in the presence of conformational changes is achieved by enforcing neither chain nor domain rigidity. The visualization of results is facilitated by popular molecular-graphics software such as CCP4mg and PyMOL, providing intuitive feedback regarding structural conservation and subtle dissimilarities between close homologues that can otherwise be hard to identify. Automatically generated colour schemes corresponding to various residue-based scores are provided, which allow the assessment of the conservation of backbone and side-chain conformations relative to the local coordinate frame. Structural comparison tools such as ProSMART can help to break the complexity that accompanies the constantly growing

Conformation-independent structural comparison of macromolecules with ProSMART

Energy Technology Data Exchange (ETDEWEB)

Nicholls, Robert A., E-mail: nicholls@mrc-lmb.cam.ac.uk [MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH (United Kingdom); Fischer, Marcus [University of California San Francisco, San Francisco, CA 94158 (United States); McNicholas, Stuart [University of York, Heslington, York YO10 5DD (United Kingdom); Murshudov, Garib N. [MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH (United Kingdom)

2014-09-01

The Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed to allow local comparative structural analyses independent of the global conformations and sequence homology of the compared macromolecules. This allows quick and intuitive visualization of the conservation of backbone and side-chain conformations, providing complementary information to existing methods. The identification and exploration of (dis)similarities between macromolecular structures can help to gain biological insight, for instance when visualizing or quantifying the response of a protein to ligand binding. Obtaining a residue alignment between compared structures is often a prerequisite for such comparative analysis. If the conformational change of the protein is dramatic, conventional alignment methods may struggle to provide an intuitive solution for straightforward analysis. To make such analyses more accessible, the Procrustes Structural Matching Alignment and Restraints Tool (ProSMART) has been developed, which achieves a conformation-independent structural alignment, as well as providing such additional functionalities as the generation of restraints for use in the refinement of macromolecular models. Sensible comparison of protein (or DNA/RNA) structures in the presence of conformational changes is achieved by enforcing neither chain nor domain rigidity. The visualization of results is facilitated by popular molecular-graphics software such as CCP4mg and PyMOL, providing intuitive feedback regarding structural conservation and subtle dissimilarities between close homologues that can otherwise be hard to identify. Automatically generated colour schemes corresponding to various residue-based scores are provided, which allow the assessment of the conservation of backbone and side-chain conformations relative to the local coordinate frame. Structural comparison tools such as ProSMART can help to break the complexity that accompanies the constantly growing

Analysis of structure-function network decoupling in the brain systems of spastic diplegic cerebral palsy.

Science.gov (United States)

Lee, Dongha; Pae, Chongwon; Lee, Jong Doo; Park, Eun Sook; Cho, Sung-Rae; Um, Min-Hee; Lee, Seung-Koo; Oh, Maeng-Keun; Park, Hae-Jeong

2017-10-01

Manifestation of the functionalities from the structural brain network is becoming increasingly important to understand a brain disease. With the aim of investigating the differential structure-function couplings according to network systems, we investigated the structural and functional brain networks of patients with spastic diplegic cerebral palsy with periventricular leukomalacia compared to healthy controls. The structural and functional networks of the whole brain and motor system, constructed using deterministic and probabilistic tractography of diffusion tensor magnetic resonance images and Pearson and partial correlation analyses of resting-state functional magnetic resonance images, showed differential embedding of functional networks in the structural networks in patients. In the whole-brain network of patients, significantly reduced global network efficiency compared to healthy controls were found in the structural networks but not in the functional networks, resulting in reduced structural-functional coupling. On the contrary, the motor network of patients had a significantly lower functional network efficiency over the intact structural network and a lower structure-function coupling than the control group. This reduced coupling but reverse directionality in the whole-brain and motor networks of patients was prominent particularly between the probabilistic structural and partial correlation-based functional networks. Intact (or less deficient) functional network over impaired structural networks of the whole brain and highly impaired functional network topology over the intact structural motor network might subserve relatively preserved cognitions and impaired motor functions in cerebral palsy. This study suggests that the structure-function relationship, evaluated specifically using sparse functional connectivity, may reveal important clues to functional reorganization in cerebral palsy. Hum Brain Mapp 38:5292-5306, 2017. © 2017 Wiley Periodicals

Functional and structural responses to marine urbanisation

Science.gov (United States)

Mayer-Pinto, M.; Cole, V. J.; Johnston, E. L.; Bugnot, A.; Hurst, H.; Airoldi, L.; Glasby, T. M.; Dafforn, K. A.

2018-01-01

Urban areas have broad ecological footprints with complex impacts on natural systems. In coastal areas, growing populations are advancing their urban footprint into the ocean through the construction of seawalls and other built infrastructure. While we have some understanding of how urbanisation might drive functional change in terrestrial ecosystems, coastal systems have been largely overlooked. This study is one of the first to directly assess how changes in diversity relate to changes in ecosystem properties and functions (e.g. productivity, filtration rates) of artificial and natural habitats in one of the largest urbanised estuaries in the world, Sydney Harbour. We complemented our surveys with an extensive literature search. We found large and important differences in the community structure and function between artificial and natural coastal habitats. However, differences in diversity and abundance of organisms do not necessarily match observed functional changes. The abundance and composition of important functional groups differed among habitats with rocky shores having 40% and 70% more grazers than seawalls or pilings, respectively. In contrast, scavengers were approximately 8 times more abundant on seawalls than on pilings or rocky shores and algae were more diverse on natural rocky shores and seawalls than on pilings. Our results confirm previous findings in the literature. Oysters were more abundant on pilings than on rocky shores, but were also smaller. Interestingly, these differences in oyster populations did not affect in situ filtration rates between habitats. Seawalls were the most invaded habitats while pilings supported greater secondary productivity than other habitats. This study highlights the complexity of the diversity-function relationship and responses to ocean sprawl in coastal systems. Importantly, we showed that functional properties should be considered independently from structural change if we are to design and manage artificial

NCACO-score: An effective main-chain dependent scoring function for structure modeling

Directory of Open Access Journals (Sweden)

Dong Xiaoxi

2011-05-01

Full Text Available Abstract Background Development of effective scoring functions is a critical component to the success of protein structure modeling. Previously, many efforts have been dedicated to the development of scoring functions. Despite these efforts, development of an effective scoring function that can achieve both good accuracy and fast speed still presents a grand challenge. Results Based on a coarse-grained representation of a protein structure by using only four main-chain atoms: N, Cα, C and O, we develop a knowledge-based scoring function, called NCACO-score, that integrates different structural information to rapidly model protein structure from sequence. In testing on the Decoys'R'Us sets, we found that NCACO-score can effectively recognize native conformers from their decoys. Furthermore, we demonstrate that NCACO-score can effectively guide fragment assembly for protein structure prediction, which has achieved a good performance in building the structure models for hard targets from CASP8 in terms of both accuracy and speed. Conclusions Although NCACO-score is developed based on a coarse-grained model, it is able to discriminate native conformers from decoy conformers with high accuracy. NCACO is a very effective scoring function for structure modeling.

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures.

Science.gov (United States)

Lua, Rhonald C; Wilson, Stephen J; Konecki, Daniel M; Wilkins, Angela D; Venner, Eric; Morgan, Daniel H; Lichtarge, Olivier

2016-01-04

The structure and function of proteins underlie most aspects of biology and their mutational perturbations often cause disease. To identify the molecular determinants of function as well as targets for drugs, it is central to characterize the important residues and how they cluster to form functional sites. The Evolutionary Trace (ET) achieves this by ranking the functional and structural importance of the protein sequence positions. ET uses evolutionary distances to estimate functional distances and correlates genotype variations with those in the fitness phenotype. Thus, ET ranks are worse for sequence positions that vary among evolutionarily closer homologs but better for positions that vary mostly among distant homologs. This approach identifies functional determinants, predicts function, guides the mutational redesign of functional and allosteric specificity, and interprets the action of coding sequence variations in proteins, people and populations. Now, the UET database offers pre-computed ET analyses for the protein structure databank, and on-the-fly analysis of any protein sequence. A web interface retrieves ET rankings of sequence positions and maps results to a structure to identify functionally important regions. This UET database integrates several ways of viewing the results on the protein sequence or structure and can be found at http://mammoth.bcm.tmc.edu/uet/. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Adaptive Functional-Based Neuro-Fuzzy-PID Incremental Controller Structure

Directory of Open Access Journals (Sweden)

Ashraf Ahmed Fahmy

2014-03-01

Full Text Available This paper presents an adaptive functional-based Neuro-fuzzy-PID incremental (NFPID controller structure that can be tuned either offline or online according to required controller performance. First, differential membership functions are used to represent the fuzzy membership functions of the input-output space of the three term controller. Second, controller rules are generated based on the discrete proportional, derivative, and integral function for the fuzzy space. Finally, a fully differentiable fuzzy neural network is constructed to represent the developed controller for either offline or online controller parameter adaptation.  Two different adaptation methods are used for controller tuning, offline method based on controller transient performance cost function optimization using Bees Algorithm, and online method based on tracking error minimization using back-propagation with momentum algorithm. The proposed control system was tested to show the validity of the controller structure over a fixed PID controller gains to control SCARA type robot arm.

Comparison of parton distributions and structure functions for the proton

International Nuclear Information System (INIS)

Abramowicz, H.; Charchula, K.; Krawczyk, M.; Levy, A.

1990-09-01

A comparative study of the most popular parton parametrizations is presented. The individual parton distributions as well as the F 2 structure function are discussed with a particular emphasis on the low x region, 10 -4 -2 . The predictions of these parametrizations for the F 2 structure function have a wide spread which persists also in the HERA kinematical region. (orig.)

Intrinsic polarization of the high energy W-boson structure functions

International Nuclear Information System (INIS)

Ralston, J.P.; Olness, F.

1986-01-01

Several new issues are presented that are to be incorporated into a consistent treatment of high-energy transverse effective-W boson structure functions. The issues included the numerical importance of the proper choice of scale, and the q 2 evolution of the boson structure functions in an Altarelli-Parisi framework. We investigate a novel effect of the V-A coupling which produces a sizable intrinsic polarization of the W distributions. A preliminary estimate yields a left- to right-helicity structure function ratio W/sub L// + W/sub R/ + ≅ 1 - 21/(1 - x) + 21/(1 - x) 2 . For x ≥ 0.06, there are two lift-handed W + 's for every right-handed one in an unpolarized proton. 11 refs., 2 figs

EXPLORING PHYSICIANS' DISSATISFACTION AND WORK-RELATED STRESS: DEVELOPMENT OF THE PhyDis SCALE

Directory of Open Access Journals (Sweden)

Monica Pedrazza

2016-08-01

Full Text Available Research, all over the world, is starting to recognize the potential impact of physicians’ dissatisfaction and burnout on their productivity, that is, on their intent to leave the job, on their work ability, on the amount of sick leave days, on their intent to continue practicing, and last but not least, on the quality of the services provided, which is an essential part of the general medical care system. It was interest of the provincial medical board’s ethical committee to acquire information about physician’s work-related stress and dissatisfaction. The research group was committed to define the indicators of dissatisfaction and work-related stressors. Focus groups were carried out, 21 stressful experience’s indicators were identified; we developed an online questionnaire to assess the amount of perceived stress relating to each indicator at work (3070 physicians were contacted by e-mail; quantitative and qualitative data analysis were carried out. The grounded theory perspective was applied in order to assure the most reliable procedure to investigate the concepts’ structure of work-related stress. We tested the five dimensions' model of the stressful experience with a confirmatory factor analysis: Personal Costs; Decline in Public Image and Role Uncertainty; Physician's Responsibility toward hopelessly ill Patients; Relationship with Staff and Colleagues; Bureaucracy. We split the sample according to attachment style (secure and insecure -anxious and avoidant-. Results show the complex representation of physicians’ dissatisfaction at work also with references to the variable of individual difference of attachment security/insecurity. The discriminant validity of the scale was tested. The original contribution of this paper lies on the one hand in the qualitative in depth inductive analysis of physicians’ dissatisfaction starting from physicians’ perception, on the other hand, it represents the first attempt to analyze the

Exploring Physicians' Dissatisfaction and Work-Related Stress: Development of the PhyDis Scale.

Science.gov (United States)

Pedrazza, Monica; Berlanda, Sabrina; Trifiletti, Elena; Bressan, Franco

2016-01-01

Research, all over the world, is starting to recognize the potential impact of physicians' dissatisfaction and burnout on their productivity, that is, on their intent to leave the job, on their work ability, on the amount of sick leave days, on their intent to continue practicing, and last but not least, on the quality of the services provided, which is an essential part of the general medical care system. It was interest of the provincial medical board's ethical committee to acquire information about physician's work-related stress and dissatisfaction. The research group was committed to define the indicators of dissatisfaction and work-related stressors. Focus groups were carried out, 21 stressful experience's indicators were identified; we developed an online questionnaire to assess the amount of perceived stress relating to each indicator at work (3070 physicians were contacted by e-mail); quantitative and qualitative data analysis were carried out. The grounded theory perspective was applied in order to assure the most reliable procedure to investigate the concepts' structure of "work-related stress." We tested the five dimensions' model of the stressful experience with a confirmatory factor analysis: Personal Costs; Decline in Public Image and Role Uncertainty; Physician's Responsibility toward hopelessly ill Patients; Relationship with Staff and Colleagues; Bureaucracy. We split the sample according to attachment style (secure and insecure -anxious and avoidant-). Results show the complex representation of physicians' dissatisfaction at work also with references to the variable of individual difference of attachment security/insecurity. The discriminant validity of the scale was tested. The original contribution of this paper lies on the one hand in the qualitative in depth inductive analysis of physicians' dissatisfaction starting from physicians' perception, on the other hand, it represents the first attempt to analyze the physicians' dissatisfaction with

DNA mimic proteins: functions, structures, and bioinformatic analysis.

Science.gov (United States)

Wang, Hao-Ching; Ho, Chun-Han; Hsu, Kai-Cheng; Yang, Jinn-Moon; Wang, Andrew H-J

2014-05-13

DNA mimic proteins have DNA-like negative surface charge distributions, and they function by occupying the DNA binding sites of DNA binding proteins to prevent these sites from being accessed by DNA. DNA mimic proteins control the activities of a variety of DNA binding proteins and are involved in a wide range of cellular mechanisms such as chromatin assembly, DNA repair, transcription regulation, and gene recombination. However, the sequences and structures of DNA mimic proteins are diverse, making them difficult to predict by bioinformatic search. To date, only a few DNA mimic proteins have been reported. These DNA mimics were not found by searching for functional motifs in their sequences but were revealed only by structural analysis of their charge distribution. This review highlights the biological roles and structures of 16 reported DNA mimic proteins. We also discuss approaches that might be used to discover new DNA mimic proteins.

Soil-Borne Microbial Functional Structure across Different Land Uses

Directory of Open Access Journals (Sweden)

Eiko E. Kuramae

2014-01-01

Full Text Available Land use change alters the structure and composition of microbial communities. However, the links between environmental factors and microbial functions are not well understood. Here we interrogated the functional structure of soil microbial communities across different land uses. In a multivariate regression tree analysis of soil physicochemical properties and genes detected by functional microarrays, the main factor that explained the different microbial community functional structures was C : N ratio. C : N ratio showed a significant positive correlation with clay and soil pH. Fields with low C : N ratio had an overrepresentation of genes for carbon degradation, carbon fixation, metal reductase, and organic remediation categories, while fields with high C : N ratio had an overrepresentation of genes encoding dissimilatory sulfate reductase, methane oxidation, nitrification, and nitrogen fixation. The most abundant genes related to carbon degradation comprised bacterial and fungal cellulases; bacterial and fungal chitinases; fungal laccases; and bacterial, fungal, and oomycete polygalacturonases. The high number of genes related to organic remediation was probably driven by high phosphate content, while the high number of genes for nitrification was probably explained by high total nitrogen content. The functional gene diversity found in different soils did not group the sites accordingly to land management. Rather, the soil factors, C : N ratio, phosphate, and total N, were the main factors driving the differences in functional genes across the fields examined.

Hierarchical structure of correlation functions for single jets

International Nuclear Information System (INIS)

Lupia, S.; Giovannini, A.; Ugoccioni, R.

1993-01-01

Theoretical basis of void scaling function properties of hierarchical structure in rapidity and p T intervals are explored. Their phenomenological consequences are analyzed at single jet level by using Monte Carlo methods in e + e - annihilation. It is found that void scaling function study provides an interesting alternative approach for characterizing single jets of different origin. (orig.)

Dipole rescattering and the nuclear structure function

Energy Technology Data Exchange (ETDEWEB)

Carvalho, F. [Depto de Ciencias Exatas e da Terra, Universidade Federal de Sao Paulo, SP (Brazil); Goncalves, V. P. [Instituto de Fisica e Matematica, Universidade Federal de Pelotas, Caixa Postal 354, CEP 96010-900, Pelotas, RS (Brazil); Navarra, F. S.; Oliveira, E. G. [Instituto de Fisica, Universidade de Sao Paulo Rua do Matao, Travessa R, 187, 05508-090 Sao Paulo, SP (Brazil)

2013-03-25

In the framework of the dipole model, we study the effects of the dipole multiple scatterings in a nuclear target and compute the nuclear structure function. We compare different unitarization schemes and confront our results with the E665 data.

Subjective Cognitive Decline: Mapping Functional and Structural Brain Changes-A Combined Resting-State Functional and Structural MR Imaging Study.

Science.gov (United States)

Sun, Yu; Dai, Zhengjia; Li, Yuxia; Sheng, Can; Li, Hongyan; Wang, Xiaoni; Chen, Xiaodan; He, Yong; Han, Ying

2016-10-01

Purpose To determine whether individuals with subjective cognitive decline (SCD) exhibit functional and structural brain alterations by using resting-state functional and structural magnetic resonance (MR) imaging. Materials and Methods This study received institutional review board approval, and all participants gave informed consent. Resting-state functional MR imaging and structural MR imaging techniques were used to measure amplitude of low-frequency fluctuations (ALFF) and regional gray matter volume in 25 subjects with SCD (mean age, 65.52 years ± 6.12) and 61 control subjects (mean age, 64.11 years ± 8.59). Voxel-wise general linear model analyses were used to examine between-group differences in ALFF or in gray matter volume and to further determine the brain-behavioral relationship. Results Subjects with SCD exhibited higher ALFF values than did control subjects in the bilateral inferior parietal lobule (left: 0.44 ± 0.25 vs 0.27 ± 0.18, respectively; P = .0003; right: 1.46 ± 0.45 vs 1.10 ± 0.37, respectively; P = .0015), right inferior (0.45 ± 0.15 vs 0.37 ± 0.08, repectively; P = .0106) and middle (1.03 ± 0.32 vs 0.83 ± 0.20, respectively; P = .0008) occipital gyrus, right superior temporal gyrus (0.11 ± 0.07 vs 0.07 ± 0.04, respectively; P = .0016), and right cerebellum posterior lobe (0.51 ± 0.27 vs 0.39 ± 0.15, respectively; P = .0010). In the SCD group, significant correlations were found between Auditory Verbal Learning Test recognition scores and ALFF in the left inferior parietal lobe (r = -0.79, P Learning Test immediate recall scores and ALFF values in the right middle occipital gyrus (r = -0.64, P = .002). Nonsignificant group differences were found in gray matter volume (P > .05, corrected). Conclusion Individuals with SCD had altered spontaneous functional activity, suggesting that resting-state functional MR imaging may be a noninvasive method for characterizing SCD. (©) RSNA, 2016 Online supplemental material is available for

Protein Function Prediction Based on Sequence and Structure Information

KAUST Repository

Smaili, Fatima Z.

2016-01-01

operate. In this master thesis project, we worked on inferring protein functions based on the primary protein sequence. In the approach we follow, 3D models are first constructed using I-TASSER. Functions are then deduced by structurally matching

Structural and functional loss in restored wetland ecosystems.

Directory of Open Access Journals (Sweden)

David Moreno-Mateos

2012-01-01

Full Text Available Wetlands are among the most productive and economically valuable ecosystems in the world. However, because of human activities, over half of the wetland ecosystems existing in North America, Europe, Australia, and China in the early 20th century have been lost. Ecological restoration to recover critical ecosystem services has been widely attempted, but the degree of actual recovery of ecosystem functioning and structure from these efforts remains uncertain. Our results from a meta-analysis of 621 wetland sites from throughout the world show that even a century after restoration efforts, biological structure (driven mostly by plant assemblages, and biogeochemical functioning (driven primarily by the storage of carbon in wetland soils, remained on average 26% and 23% lower, respectively, than in reference sites. Either recovery has been very slow, or postdisturbance systems have moved towards alternative states that differ from reference conditions. We also found significant effects of environmental settings on the rate and degree of recovery. Large wetland areas (>100 ha and wetlands restored in warm (temperate and tropical climates recovered more rapidly than smaller wetlands and wetlands restored in cold climates. Also, wetlands experiencing more (riverine and tidal hydrologic exchange recovered more rapidly than depressional wetlands. Restoration performance is limited: current restoration practice fails to recover original levels of wetland ecosystem functions, even after many decades. If restoration as currently practiced is used to justify further degradation, global loss of wetland ecosystem function and structure will spread.

Surface structure and properties of functionalized nanodiamonds: a first-principles study

International Nuclear Information System (INIS)

Datta, Aditi; Kirca, Mesut; Fu Yao; To, Albert C

2011-01-01

The goal of this work is to gain fundamental understanding of the surface and internal structure of functionalized detonation nanodiamonds (NDs) using quantum mechanics based density functional theory (DFT) calculations. The unique structure of ND assists in the binding of different functional groups to its surface which in turn facilitates binding with drug molecules. The ability to comprehensively model the surface properties, as well as drug-ND interactions during functionalization, is a challenge and is the problem of our interest. First, the structure of NDs of technologically relevant size (∼5 nm) was optimized using classical mechanics based molecular mechanics simulations. Quantum mechanics based density functional theory (DFT) was then employed to analyse the properties of smaller relevant parts of the optimized cluster further to address the effect of functionalization on the stability of the cluster and reactivity at its surface. It is found that functionalization is preferred over reconstruction at the (100) surface and promotes graphitization in the (111) surface for NDs functionalized with the carbonyl oxygen (C = O) group. It is also seen that the edges of ND are the preferred sites for functionalization with the carboxyl group (-COOH) vis-a-vis the corners of ND.

Surface structure and properties of functionalized nanodiamonds: a first-principles study

Energy Technology Data Exchange (ETDEWEB)

Datta, Aditi; Kirca, Mesut; Fu Yao; To, Albert C, E-mail: albertto@pitt.edu [Department of Mechanical Engineering and Materials Science and Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA 15261 (United States)

2011-02-11

The goal of this work is to gain fundamental understanding of the surface and internal structure of functionalized detonation nanodiamonds (NDs) using quantum mechanics based density functional theory (DFT) calculations. The unique structure of ND assists in the binding of different functional groups to its surface which in turn facilitates binding with drug molecules. The ability to comprehensively model the surface properties, as well as drug-ND interactions during functionalization, is a challenge and is the problem of our interest. First, the structure of NDs of technologically relevant size ({approx}5 nm) was optimized using classical mechanics based molecular mechanics simulations. Quantum mechanics based density functional theory (DFT) was then employed to analyse the properties of smaller relevant parts of the optimized cluster further to address the effect of functionalization on the stability of the cluster and reactivity at its surface. It is found that functionalization is preferred over reconstruction at the (100) surface and promotes graphitization in the (111) surface for NDs functionalized with the carbonyl oxygen (C = O) group. It is also seen that the edges of ND are the preferred sites for functionalization with the carboxyl group (-COOH) vis-a-vis the corners of ND.

Structural and functional cerebral correlates of hypnotic suggestibility.

Directory of Open Access Journals (Sweden)

Alexa Huber

Full Text Available Little is known about the neural bases of hypnotic suggestibility, a cognitive trait referring to the tendency to respond to hypnotic suggestions. In the present magnetic resonance imaging study, we performed regression analyses to assess hypnotic suggestibility-related differences in local gray matter volume, using voxel-based morphometry, and in waking resting state functional connectivity of 10 resting state networks, in 37 healthy women. Hypnotic suggestibility was positively correlated with gray matter volume in portions of the left superior and medial frontal gyri, roughly overlapping with the supplementary and pre-supplementary motor area, and negatively correlated with gray matter volume in the left superior temporal gyrus and insula. In the functional connectivity analysis, hypnotic suggestibility was positively correlated with functional connectivity between medial posterior areas, including bilateral posterior cingulate cortex and precuneus, and both the lateral visual network and the left fronto-parietal network; a positive correlation was also found with functional connectivity between the executive-control network and a right postcentral/parietal area. In contrast, hypnotic suggestibility was negatively correlated with functional connectivity between the right fronto-parietal network and the right lateral thalamus. These findings demonstrate for the first time a correlation between hypnotic suggestibility, the structural features of specific cortical regions, and the functional connectivity during the normal resting state of brain structures involved in imagery and self-monitoring activity.

Structural and functional cerebral correlates of hypnotic suggestibility.

Science.gov (United States)

Huber, Alexa; Lui, Fausta; Duzzi, Davide; Pagnoni, Giuseppe; Porro, Carlo Adolfo

2014-01-01

Little is known about the neural bases of hypnotic suggestibility, a cognitive trait referring to the tendency to respond to hypnotic suggestions. In the present magnetic resonance imaging study, we performed regression analyses to assess hypnotic suggestibility-related differences in local gray matter volume, using voxel-based morphometry, and in waking resting state functional connectivity of 10 resting state networks, in 37 healthy women. Hypnotic suggestibility was positively correlated with gray matter volume in portions of the left superior and medial frontal gyri, roughly overlapping with the supplementary and pre-supplementary motor area, and negatively correlated with gray matter volume in the left superior temporal gyrus and insula. In the functional connectivity analysis, hypnotic suggestibility was positively correlated with functional connectivity between medial posterior areas, including bilateral posterior cingulate cortex and precuneus, and both the lateral visual network and the left fronto-parietal network; a positive correlation was also found with functional connectivity between the executive-control network and a right postcentral/parietal area. In contrast, hypnotic suggestibility was negatively correlated with functional connectivity between the right fronto-parietal network and the right lateral thalamus. These findings demonstrate for the first time a correlation between hypnotic suggestibility, the structural features of specific cortical regions, and the functional connectivity during the normal resting state of brain structures involved in imagery and self-monitoring activity.

Gluon structure function for deeply inelastic scattering with nucleus in QCD

Energy Technology Data Exchange (ETDEWEB)

Ayala Filho, Alvaro L; Ducati, M.B. Gay [Rio Grande do Sul Univ., Porto Alegre, RS (Brazil). Inst. de Fisica; Levin, Eugene [Centro Brasileiro de Pesquisas Fisicas (CBPF), Rio de Janeiro, RJ (Brazil); [Petersburg Nuclear Physics Institute, Gatchina (Russian Federation). Theory Dept.

1995-06-01

In this talk we present the first calculation of the gluon structure function for nucleus in QCD. We discuss the Glauber formula for the gluon structure function and the violation of this simple approach that we anticipate in QCD. (author). 10 refs, 4 figs.

Structure and Dynamics of Hydroxyl-Functionalized Protic Ammonium Carboxylate Ionic Liquids.

Science.gov (United States)

Thummuru, Dhileep Nagi Reddy; Mallik, Bhabani S

2017-10-26

We performed classical molecular dynamics simulations to investigate the structure and dynamics of protic ionic liquids, 2-hydroxy ethylammonium acetate, ethylammonium hydroxyacetate, and 2-hydroxyethylammonium hydroxyacetate at ambient conditions. Structural properties such as density, radial distribution functions, spatial distribution functions, and structure factors have been calculated. Dynamic properties such as mean square displacements, as well as residence and hydrogen bond dynamics have also been calculated. Hydrogen bond lifetimes and residence times change with the addition of hydroxyl groups. We observe that when a hydroxyl group is present on the cation, dynamics become very slow and it forms a strong hydrogen bond with carboxylate oxygen atoms of the anion. The hydroxyl functionalized ILs show more dynamic diversity than structurally similar ILs.

Hybrid functional calculation of electronic and phonon structure of BaSnO3

International Nuclear Information System (INIS)

Kim, Bog G.; Jo, J.Y.; Cheong, S.W.

2013-01-01

Barium stannate, BaSnO 3 (BSO), with a cubic perovskite structure, has been highlighted as a promising host material for the next generation transparent oxide electrodes. This study examined theoretically the electronic structure and phonon structure of BSO using hybrid density functional theory based on the HSE06 functional. The electronic structure results of BSO were corrected by extending the phonon calculations based on the hybrid density functional. The fundamental thermal properties were also predicted based on a hybrid functional calculation. Overall, a detailed understanding of the electronic structure, phonon modes and phonon dispersion of BSO will provide a theoretical starting-point for engineering applications of this material. - Graphical Abstract: (a) Crystal structure of BaSnO 3 . The center ball is Ba and small (red) ball on edge is oxygen and SnO 6 octahedrons are plotted as polyhedron. (b) Electronic band structure along the high symmetry point in the Brillouin zone using the HSE06 hybrid functional. (c) The phonon dispersion curve calculated using the HSE06 hybrid functional (d) Zone center lowest energy F 1u phonon mode. Highlights: ► We report the full hybrid functional calculation of not only the electronic structure but also the phonon structure for BaSnO 3 . ► The band gap calculation of HSE06 revealed an indirect gap with 2.48 eV. ► The effective mass at the conduction band minimum and valence band maximum was calculated. ► In addition, the phonon structure of BSO was calculated using the HSE06 functional. ► Finally, the heat capacity was calculated and compared with the recent experimental result.

An introduction about precise measurements of QED γ structure functions

International Nuclear Information System (INIS)

Courau, A.

1989-11-01

Pure QED processes are theoretically exactly computable. However precise measurements and theoretical expectations of QED γ structure functions within a given experimental acceptance are not so trivial. Yet such a study is quite interesting. It supplies on the one hand a good QED test and, on the other hand, a good exercise for testing the procedure used for the determination of the hadronic γ structure functions

Structural and functional correlates of epileptogenesis — Does gender matter?

Science.gov (United States)

Savic, Ivanka; Engel, Jerome

2016-01-01

In the majority of neuropsychiatric conditions, marked gender-based differences have been found in the epidemiology, clinical manifestations, and therapy of disease. One possible reason is that sex differences in cerebral morphology, structural and functional connections, render men and women differentially vulnerable to various disease processes. The present review addresses this issue with respect to the functional and structural correlates to some forms of epilepsy. PMID:24943053

Linking structural features of protein complexes and biological function.

Science.gov (United States)

Sowmya, Gopichandran; Breen, Edmond J; Ranganathan, Shoba

2015-09-01

Protein-protein interaction (PPI) establishes the central basis for complex cellular networks in a biological cell. Association of proteins with other proteins occurs at varying affinities, yet with a high degree of specificity. PPIs lead to diverse functionality such as catalysis, regulation, signaling, immunity, and inhibition, playing a crucial role in functional genomics. The molecular principle of such interactions is often elusive in nature. Therefore, a comprehensive analysis of known protein complexes from the Protein Data Bank (PDB) is essential for the characterization of structural interface features to determine structure-function relationship. Thus, we analyzed a nonredundant dataset of 278 heterodimer protein complexes, categorized into major functional classes, for distinguishing features. Interestingly, our analysis has identified five key features (interface area, interface polar residue abundance, hydrogen bonds, solvation free energy gain from interface formation, and binding energy) that are discriminatory among the functional classes using Kruskal-Wallis rank sum test. Significant correlations between these PPI interface features amongst functional categories are also documented. Salt bridges correlate with interface area in regulator-inhibitors (r = 0.75). These representative features have implications for the prediction of potential function of novel protein complexes. The results provide molecular insights for better understanding of PPIs and their relation to biological functions. © 2015 The Protein Society.