A NEW APPROACH FOR IMPROVEMENT OF THE METHODOLOGY TO IDENTIFY A TYPE OF INTERACTION OF LACTIC ACID BACTERIA IN CONSORTIUMS OF DIFFERENT STAGES OF CULTIVATION

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V. V. Kondratenko

2017-01-01

Full Text Available Existing approaches for evaluation of types of interactions between individual monocultures in consortiums allow obtaining only qualitative results (synergistic, antagonistic, additive interaction as a whole, without regarding to changes in the cultivation process. Therefore, the development of a new approach for the quantitative determination of this indicator as a continuous function defined during the all period of cultivation is in need. In the course of the research a two-component consortium of lactic acid microorganisms cultivated on different mediums according to directed fermentation process in vegetable products was chosen to analyze types of interaction. As a result, the an original approach that was based on comparison of grow speed of biomass of microorganisms with calculated additive curve determined by results of dynamic analysis of titre of microorganism participating in consortium in monoculture during their cultivation has been elaborated. This approach is a convenient tool to identify complex regularity in changes of types of microorganism interaction in consortium represented by continuous function defined during all cultivation period.

Microorganisms' mediated reduction of β-ketoesters

African Journals Online (AJOL)

STORAGESEVER

2008-10-20

Oct 20, 2008 ... Whole cells usually express a multitude of enzymatic activities; therefore an ... Each microorganism was cultivated for the biomass development on specific medium ..... Ketoester reductase for conversion of keto acid esters to ...

Development of methodology for the fore cast of microbiological processes under transaction to industrial cultivation

International Nuclear Information System (INIS)

Lepeshkin, G.; Bugreev, V.

1996-01-01

Proposals for possible cooperation with Western partners : To obtain the scale transfers method in laboratory condition of microorganisms cultivation to industrial conditions based on the parameters of spatial cultivation to industrial conditions based on the parameters of spatial heterogeneous hydrodynamics situation in bioreactors. The problem is the impossibility to count constructive elements and regimes of ferments operation which provided optimum environment for microorganisms vital functions because the hydrodynamic, biological and mass change processes are complicated. To solve the problems it is required to : - Investigate the different sides of physiology of culture-producer of Biologically Active Substances (hereinafter BAS) - Investigate the interrelation between the stirring and biological transformation in microorganism cells - Analyze and search main tendencies required to control biosynthesis (BAS) processes and reproduction of biosynthesis results at the cultivation change scale - Analyze technical properties of the reactor and the revealing of the spatial heterogeneous hydrodynamics situation at the different scales of bioreactor parameters - Investigate cinematic energy mediums field in the different bioreactor scales - Obtain the criteria dependencies estimating the irregularity of the stirrings intensity - Prepare the methodological foundations of microbiological processes forecast required to introduce to the industrial biosynthesis environment Expected results : To detect the comparable regimes of bioreactor operation in order to achieve equal production range and realize the scale-up method

Surfactant producing TNT-degrading microorganisms for bioremediation

Energy Technology Data Exchange (ETDEWEB)

Vorobyov, A.; Marchenko, A.; Rudneva, O.; Borovick, R. [Research Center for Toxicology and Hygienic Regulation of Biopreparations, Serpukhov, Moscow region (Russian Federation); Radosevich, M. [Univ. of Delaware, Newark (United States). Dept. of Plant and Soil Sciences

2003-07-01

In general the biodegradation of nitroaromatic hydrocarbons is influenced by their bioavailability. 2,4,6-trinitrotoluene is very poorly soluble in water. TNT is easily adsorbed to clay or humus fractions in the soil, and pass very slowly to the aqueous phase, where microorganisms metabolize it. Biosurfactants that increase TNT solubility and improve its bioavailability can thereby accelerate degradation. Pure cultures of microorganisms-TNT degraders were isolated by the method of enrichment cultures from samples of different-type soil contaminated by TNT (soddy-podzol, black earth, and gray forest ones). From 28 soil samples 35 isolates of microorganisms degrading TNT were taken. The isolated soil samples had been tested for availability of microbial activity towards TNT. By10 g of air-dried soil, 10 ml of distilled water, and 2 mg of TNT were placed into 750 ml shaken flasks. The flasks were incubated at 150 rev/min and 24 C. Glucose, sodium succinate or sodium acetate had been used as co-substrates. The ability of the strains to produce surfactants was studied by drop collapsing test and direct measuring of surface tension of cultural liquid after cultivation with TNT. Cells of the strains were cultivated on solid and liquid nutrient media. For drop collapsing test the cells were cultivated on solid nutrient media; the separated colonies were suspended in distilled water. Drop sustainability test ws conducted on a standard 96-well plates coated with a thin layer of vaseline oil. Surface tension of cultural liquid ws measured after cultivation of strains in the presence of TNT with the use of a ring tensiometer. Before measuring of surface tension microbial cells were collected from liquid culture by centrifugation. (orig.)

Growth response of microorganisms to different molecular fractions of lignite

Energy Technology Data Exchange (ETDEWEB)

Polman, J.K.; Breckenridge, C.R.; Dugan, P.R.; Quigley, D.R.

1990-01-01

Our research is primarily concerned with isolating and characterizing microbes which are able to dissimilate coal and convert it to other useful chemicals. This quarter, general growth responses of microorganisms cultivated in the presence of different molecular weight fractions of lignite coal were examined. Aerobic and anaerobic environmental samples from a variety of ecological niches were used as inocula. Growth of the microorganisms in these samples on the following types of media was tested: COAL medium, containing alkali-solubilized whole coal; THFI medium, containing the alkali-solubilized, tetrahydrofuran-insoluble, macromolecular portion of whole coal; THFS medium, containing the THF-soluble, low molecular weight portion of whole coal; and CON medium, void of any coal constituent. Overall results indicated that the presence of the THF-soluble, low molecular weight coal fraction enhanced the growth yield and the variety of aerobic microorganisms compared to the other coal fractions or the control medium. Conversely, anaerobic microbes grew best on media which contained the macromolecular fraction. 12 refs., 5 tabs.

Genomics-Based Identifcation of Microorganisms in Human Ocular Body Fluid

DEFF Research Database (Denmark)

Kirstahler, Philipp; Solborg Bjerrum, Søren; Friis-Møller, Alice

2018-01-01

genomes and (iii) the environment. Our metagenomic read classification revealed in nearly all cases the same microorganism that was determined in cultivation- and mass spectrometry-based analyses. For some patients, we identified the sequence type of the microorganism and antibiotic resistance genes...

Cultivable microflora and endo mycorrhizas obtained in litter forest (Paramo Guerrero - Finca Puente de Tierra) Zipaquira, Colombia

International Nuclear Information System (INIS)

Bernal, Eleonora; Celis, Sebastian; Galindez, Ximena; Moratto, Claudia; Sanchez, Jimena; Garcia, Daniel

2006-01-01

The count of cultivable microorganisms (bacteria and fungi), cellulolytic microorganisms and endo mycorrhizas present in litter forest (property Puente de Tierra) in the Guerrero's moor, Colombia was made. The most frequently isolated microorganisms belonged to the staphylococcus, bacillus, pseudomonas, micrococcus, penicillium and rhodotorulagenus and cladosporium sp., which is a cellulolytic microorganism, was isolated in carboxymethyl cellulose agar. In addition eight morphotypes of endomycorrhizas were found, species of glomus and acaulospora predominated among them. This study contributes with the knowledge of the cultivable microorganisms of litter that have been little explored in moor ecosystems

Isolation of microorganisms involved in reduction of crystalline iron(III) oxides in natural environments.

Science.gov (United States)

Hori, Tomoyuki; Aoyagi, Tomo; Itoh, Hideomi; Narihiro, Takashi; Oikawa, Azusa; Suzuki, Kiyofumi; Ogata, Atsushi; Friedrich, Michael W; Conrad, Ralf; Kamagata, Yoichi

2015-01-01

Reduction of crystalline Fe(III) oxides is one of the most important electron sinks for organic compound oxidation in natural environments. Yet the limited number of isolates makes it difficult to understand the physiology and ecological impact of the microorganisms involved. Here, two-stage cultivation was implemented to selectively enrich and isolate crystalline iron(III) oxide reducing microorganisms in soils and sediments. Firstly, iron reducers were enriched and other untargeted eutrophs were depleted by 2-years successive culture on a crystalline ferric iron oxide (i.e., goethite, lepidocrocite, hematite, or magnetite) as electron acceptor. Fifty-eight out of 136 incubation conditions allowed the continued existence of microorganisms as confirmed by PCR amplification. High-throughput Illumina sequencing and clone library analysis based on 16S rRNA genes revealed that the enrichment cultures on each of the ferric iron oxides contained bacteria belonging to the Deltaproteobacteria (mainly Geobacteraceae), followed by Firmicutes and Chloroflexi, which also comprised most of the operational taxonomic units (OTUs) identified. Venn diagrams indicated that the core OTUs enriched with all of the iron oxides were dominant in the Geobacteraceae while each type of iron oxides supplemented selectively enriched specific OTUs in the other phylogenetic groups. Secondly, 38 enrichment cultures including novel microorganisms were transferred to soluble-iron(III) containing media in order to stimulate the proliferation of the enriched iron reducers. Through extinction dilution-culture and single colony isolation, six strains within the Deltaproteobacteria were finally obtained; five strains belonged to the genus Geobacter and one strain to Pelobacter. The 16S rRNA genes of these isolates were 94.8-98.1% identical in sequence to cultured relatives. All the isolates were able to grow on acetate and ferric iron but their physiological characteristics differed considerably in

Morphology and rheology in filamentous cultivations.

Science.gov (United States)

Wucherpfennig, T; Kiep, K A; Driouch, H; Wittmann, C; Krull, R

2010-01-01

Because of their metabolic diversity, high production capacity, secretion efficiency, and capability of carrying out posttranslational modifications, filamentous fungi are widely exploited as efficient cell factories in the production of metabolites, bioactive substances, and native or heterologous proteins, respectively. There is, however, a complex relationship between the morphology of these microorganisms, transport phenomena, the viscosity of the cultivation broth, and related productivity. The morphological characteristics vary between freely dispersed mycelia and distinct pellets of aggregated biomass, every growth form having a distinct influence on broth rheology. Hence, the advantages and disadvantages for mycelial or pellet cultivation have to be balanced out carefully. Because of the still inadequate understanding of the morphogenesis of filamentous microorganisms, fungal morphology is often a bottleneck of productivity in industrial production. To obtain an optimized production process, it is of great importance to gain a better understanding of the molecular and cell biology of these microorganisms as well as the relevant approaches in biochemical engineering. In this chapter, morphology and growth of filamentous fungi are described, with special attention given to specific problems as they arise from fungal growth forms; growth and mass transfer in fungal biopellets are discussed as an example. To emphasize the importance of the flow behavior of filamentous cultivation broths, an introduction to rheology is also given, reviewing important rheological models and recent studies concerning rheological parameters. Furthermore, current knowledge on morphology and productivity in relation to the environom is outlined in the last section of this review. Copyright 2010 Elsevier Inc. All rights reserved.

Introducing Natural Farming in Black Pepper (Piper nigrum L. Cultivation

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Kevin Muyang Tawie Sulok

2018-01-01

Full Text Available This paper reviews the role of Natural Farming as an ecological farming method to produce organically grown food of safe and high quality and at the same time improve soil quality and soil health. Currently, there is a dearth of information on the effects of Natural Farming approach on black pepper farms particularly in Sarawak, Malaysia. Previous studies on other crops had indicated positive outcome using the Natural Farming method. Thus, this paper discusses the essential role of effective microorganisms in Natural Farming and their potential in pepper cultivation. Through the action of effective microorganisms, this approach should be able to transform a degraded soil ecosystem into one that is fertile and has high nutrients availability. The mixed culture of effective microorganisms applied must be mutually compatible and coexist with one another to ensure its favorable establishment and interaction in the soil. Therefore, it is anticipated that introducing Natural Farming in black pepper cultivation can enhance the predominance of effective microorganisms in the soil, which in turn could lead to promising growth and yield of the crop.

Report on achievements in fiscal 1999. Development of technology to utilize biological resources such as composite organism systems (development of technology to utilize and produce composite organism systems); 1999 nendo fukugo seibutsukei nado seibutsu shigen riyo gijutsu kaihatsu seika hokokusho. Fukugo seibutsukei riyo seisan gijutsu no kaihatsu

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-03-01

It is intended to achieve the following objectives in terms of the technologies to utilize such functions as material production and material decomposition by using composite organism systems: develop a technology to handle the composite organism systems; establish a composite microorganism cultivation control technology, and a composite microorganism system function strengthening technology; develop a technology to separate and cultivate organism groups constituting them, and develop industrial utilization technologies. The fiscal 1999 has discussed developing the elementary technologies for the technology to utilize functions of the composite organism systems on the following research items: 1. a functional material production technology; and 2. comprehensive investigations and researches. In Item 1, development was made on a technology to detect, separate and cultivate microorganisms in soil as the histochemical analytical technology. Development was made on an in situ detection, separation and function analyzing technology for particular composite microorganisms as the function analyzing technology. In the separation and cultivation technology, development was made on a technology to detect, separate and cultivate difficult-to-cultivate microorganisms. In the functional material production technology, development was made on a technology to utilize microbial consortia producing environmentally harmonizing oil-water separating polymers, and a method to execute artificially the gene exchange in the microbial consortia. (NEDO)

The application of two-step linear temperature program to thermal analysis for monitoring the lipid induction of Nostoc sp. KNUA003 in large scale cultivation.

Science.gov (United States)

Kang, Bongmun; Yoon, Ho-Sung

2015-02-01

Recently, microalgae was considered as a renewable energy for fuel production because its production is nonseasonal and may take place on nonarable land. Despite all of these advantages, microalgal oil production is significantly affected by environmental factors. Furthermore, the large variability remains an important problem in measurement of algae productivity and compositional analysis, especially, the total lipid content. Thus, there is considerable interest in accurate determination of total lipid content during the biotechnological process. For these reason, various high-throughput technologies were suggested for accurate measurement of total lipids contained in the microorganisms, especially oleaginous microalgae. In addition, more advanced technologies were employed to quantify the total lipids of the microalgae without a pretreatment. However, these methods are difficult to measure total lipid content in wet form microalgae obtained from large-scale production. In present study, the thermal analysis performed with two-step linear temeperature program was applied to measure heat evolved in temperature range from 310 to 351 °C of Nostoc sp. KNUA003 obtained from large-scale cultivation. And then, we examined the relationship between the heat evolved in 310-351 °C (HE) and total lipid content of the wet Nostoc cell cultivated in raceway. As a result, the linear relationship was determined between HE value and total lipid content of Nostoc sp. KNUA003. Particularly, there was a linear relationship of 98% between the HE value and the total lipid content of the tested microorganism. Based on this relationship, the total lipid content converted from the heat evolved of wet Nostoc sp. KNUA003 could be used for monitoring its lipid induction in large-scale cultivation. Copyright © 2014 Elsevier Inc. All rights reserved.

A Brazilian social bee must cultivate fungus to survive.

Science.gov (United States)

Menezes, Cristiano; Vollet-Neto, Ayrton; Marsaioli, Anita Jocelyne; Zampieri, Davila; Fontoura, Isabela Cardoso; Luchessi, Augusto Ducati; Imperatriz-Fonseca, Vera Lucia

2015-11-02

The nests of social insects provide suitable microenvironments for many microorganisms as they offer stable environmental conditions and a rich source of food [1-4]. Microorganisms in turn may provide several benefits to their hosts, such as nutrients and protection against pathogens [1, 4-6]. Several examples of symbiosis between social insects and microorganisms have been found in ants and termites. These symbioses have driven the evolution of complex behaviors and nest structures associated with the culturing of the symbiotic microorganisms [5, 7, 8]. However, while much is known about these relationships in many species of ants and termites, symbiotic relationships between microorganisms and social bees have been poorly explored [3, 4, 9, 10]. Here, we report the first case of an obligatory relationship between the Brazilian stingless bee Scaptotrigona depilis and a fungus of the genus Monascus (Ascomycotina). Fungal mycelia growing on the provisioned food inside the brood cell are eaten by the larva. Larvae reared in vitro on sterilized larval food supplemented with fungal mycelia had a much higher survival rate (76%) compared to larvae reared under identical conditions but without fungal mycelia (8% survival). The fungus was found to originate from the material from which the brood cells are made. Since the bees recycle and transport this material between nests, fungus would be transferred to newly built cells and also to newly founded nests. This is the first report of a fungus cultivation mutualism in a social bee. Copyright © 2015 Elsevier Ltd. All rights reserved.

[Correlation between distribution of rhizospheric microorganisms and contents of steroidal saponins of Paris polyphylla var. yunnanensis].

Science.gov (United States)

Zhou, Nong; Qi, Wen-hua; Xiao, Guo-sheng; Ding, Bo; Zhang, Hua; Guo, Dong-qin; Shen, Wei

2015-03-01

In this paper, the varying pattern of the amount of rhizospheric microorganisms, including bacteria, actinomycetes and fungus, was observed during the cultivation of Paris polyphylla var. yunnanensis. And the correlations between number of rhizospheric microorganisms and the quality of P. polyphylla var. yunnanensis were also studied. The results showed that the rhizospheric microorganism source of P. polyphylla var. yunnanensis was rich. The distribution of rhizospheric microorganisms (soil bacteria, fungus, actinomycetes, potassium-solubilizing bacteria, inorganic phosphorus-solubilizing bacteria, organic phosphorus-solubilizing bacteria) collected from different origin places existed significant difference (P the amount of actinomycetes > the amount of fungus. The medicinal quality of P. polyphylla var. yunnanensis was influenced by their habits, and the increase of cultivation years caused the obvious decrease of the quality of P. polyphylla var. yunnanensis. Therefore, the increase of cultivation years will cause the variation of the soil micro-ecology flora, and decrease the nutrient absorption and the utilization of P. polyphylla var. yunnanensis, which will make the decrease of the medical quality of P. polyphylla var. yunnanensis.

Biodiesel production by various oleaginous microorganisms from organic wastes.

Science.gov (United States)

Cho, Hyun Uk; Park, Jong Moon

2018-05-01

Biodiesel is a biodegradable and renewable fuel. A large amount of research has considered microbial oil production using oleaginous microorganisms, but the commercialization of microbial lipids produced in this way remains uncertain due to the high cost of feedstock or low lipid yield. Microbial lipids can be typically produced by microalgae, yeasts, and bacteria; the lipid yields of these microorganisms can be improved by using sufficient concentrations of organic carbon sources. Therefore, combining low-cost organic compounds contained in organic wastes with cultivation of oleaginous microorganisms can be a promising approach to obtain commercial viability. However, to achieve effective bioconversion of low-cost substrates to microbial lipids, the characteristics of each microorganism and each substrate should be considered simultaneously. This article discusses recent approaches to developing cost-effective microbial lipid production processes that use various oleaginous microorganisms and organic wastes. Copyright © 2018 Elsevier Ltd. All rights reserved.

Molecular identification of microorganisms associated to the rhizosphere of vanilla plants in Colombia

International Nuclear Information System (INIS)

Alvarez Lopez, Claudia Lucia; Osorio Vega, Nelson Walter; Marin Montoya, Mauricio Alejandro

2013-01-01

The cultivation of vanilla (Vanilla planifolia) is highly promising in Colombia, but more research is needed on its agronomical management and beneficial microorganisms that grow associated to its rhizosphere, on which the plant depends for its nutrition and growth. This study involved the identification of microorganisms associated to the rhizosphere of vanilla plants in a crop located in Sopetran, Colombia. The microbes were isolated in selective media for functional groups such as cellulolytic, proteolytic, inorganic and organic phosphate (phytate) solubilizers, and asymbiotic nitrogen fixing bacteria. After isolation and purification, 109 microbial isolates were obtained. DNA was extracted from 52 selected isolates for molecular identification based on its and 16s RDNA sequencing, for fungi and bacteria, respectively. The diversity of rhizosphere microorganisms found was significant. Bacteria such as Bacillus Megaterium, Pseudomonas koreensis and Acinetobacter sp., and the Fungus Plectosphaerella sp., may have a high potential to be used as biofertilizers to improve vanilla plant nutrition and growth.

Isolation of Electrogenic Microorganisms with Potential to Reduce Hexavalent Chromium

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Alexander Mora Collazos

2017-01-01

Full Text Available Isolation of cultivable microorganisms was made from the biofilm formed on the anode of a microbial fuel cell put into operation for 30 days; isolated microorganisms were evaluated for their ability to produce energy and reduce the hexavalent chromium Cr (VI. Five microorganisms were isolated, which were characterized by analysis of 16S rRNA gene, placing them in four bacterial genera: Exiguobacterium (CrMFC1, Acinetobacter (CrMFC2, Aeromonas (CrMFC3 and CrMFC5 and Serratia (CrMFC4. All isolates showed electrogenic activity and ability to reduce hexavalent chromium; the Acinetobacter CrMFC1 strain showed the best electrochemical performance registering a maximum power density of 18.61 mW/m2; the other strains showed values of maximum power density between 4.6 mW/m2and 7.1 mW/m2. Strains Aeromonas CrMFC5 and Exiguobacterium CrMFC1 showed the best rates of chromium reduction being able to reduce 100 % of the Cr (VI in less than 24 hours, the Aeromonas CrMFC5 strain was the most efficient, reducing 100 % of Cr (VI in 10 hours; the other strains reduced 100% of the contaminant after 28 to 30 hours. The microorganisms isolated in this study are hardly known for their electrogenic capacity and for reducing Cr (VI; however, show promise for their use in combined systems involving energy production system coupled to bioremediation of chromium contaminated water.

The pathogenic fungi in mushroom cultivation of Agaricus bisporus (Lange.) Imbach.

OpenAIRE

Agata Tekiela

2012-01-01

The research was conducted in a mushroom growing facility located near Rzeszów, consisting of three production cycles. The number and composition of microorganisms which accompany the mushroom cultivation depended on the healthiness of: the compost, casing and spawn of Agaricus bisporus. The presence of pathogenic fungi in the cultivation halls at the beginning of the production cycle is a serious threat to the cultivation of common mushroom because their rapid development shortens the span o...

Microorganisms as sources of oils

Directory of Open Access Journals (Sweden)

Thevenieau France

2013-11-01

Full Text Available A number of microorganism belonging to the genera of yeast, fungi, bacteria and microalgae have ability to accumulate substantial amounts of oil, sometimes up to an even in excess of 70% of their biomass weight under specific cultivation conditions. For nearly 100 years, the commercial opportunities of using microorganisms as sources of oils have been continuously examined. Although it was evident that microbial oils could never compete commercially with the major commodity plant oils, there were commercially opportunities for the production of some of the higher valued oils. Today, with the great progress of metabolic and genetic engineering, the developments are focus on the high value oils containing important polyunsaturated or specific fatty acids. Such oils have the potential to be used in different applications area as food, feed and oleochemistry. This review is covering the related researches about different oleaginous microorganisms for lipids production and microbial oils biosynthesis process. In add, the lipid metabolism, metabolic engineering strategies to increase lipid production and the economics of microbial oils production are introduced.

Microorganisms involved in MIC

Energy Technology Data Exchange (ETDEWEB)

Sorensen, K. [Danish Technological Institute (Denmark)

2011-07-01

Microbiologically influenced corrosion (MIC) is a widespread problem that is difficult to detect and assess because of its complex mechanism. This paper presents the involvement of microorganisms in MIC. Some of the mechanisms that cause MIC include hydrogen consumption, production of acids, anode-cathode formation and electron shuttling. A classic bio-corrosive microorganism in the oil and gas industry is sulphate-reducing prokaryotes (SRP). Methanogens also increase corrosion rates in metals. Some of the phylogenetic orders detected while studying SRP and methanogens are archaeoglobales, clostridiales, methanosarcinales and methanothermococcus. There were some implications, such as growth of SRP not being correlated with growth of methanogens; methanogens were included in MIC risk assessment. A few examples are used to display how microorganisms are involved in topside corrosion and microbial community in producing wells. From the study, it can be concluded that, MIC risk assessment includes system data and empirical knowledge of the distribution and number of microorganisms in the system.

The pathogenic fungi in mushroom cultivation of Agaricus bisporus (Lange. Imbach.

Directory of Open Access Journals (Sweden)

Agata Tekiela

2012-12-01

Full Text Available The research was conducted in a mushroom growing facility located near Rzeszów, consisting of three production cycles. The number and composition of microorganisms which accompany the mushroom cultivation depended on the healthiness of: the compost, casing and spawn of Agaricus bisporus. The presence of pathogenic fungi in the cultivation halls at the beginning of the production cycle is a serious threat to the cultivation of common mushroom because their rapid development shortens the span of fruiting body harvests.

Threshold Dynamics of a Stochastic Chemostat Model with Two Nutrients and One Microorganism

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Jian Zhang

2017-01-01

Full Text Available A new stochastic chemostat model with two substitutable nutrients and one microorganism is proposed and investigated. Firstly, for the corresponding deterministic model, the threshold for extinction and permanence of the microorganism is obtained by analyzing the stability of the equilibria. Then, for the stochastic model, the threshold of the stochastic chemostat for extinction and permanence of the microorganism is explored. Difference of the threshold of the deterministic model and the stochastic model shows that a large stochastic disturbance can affect the persistence of the microorganism and is harmful to the cultivation of the microorganism. To illustrate this phenomenon, we give some computer simulations with different intensity of stochastic noise disturbance.

Development of a single-use microbioreactor for cultivation of microorganisms

DEFF Research Database (Denmark)

Schapper, D.; Stocks, S.M.; Szita, Nicolas

2010-01-01

of suspended cells which combines the small working volumes known from microwell plates with the versatility of bench-scale reactors. Additionally, this device is designed for single-use which significantly reduces the workload before and after the actual cultivation. The device presented here is cylindrical...

Artifical Microorganism Infection in Aviation Kerosene

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Dušan Vallo

2004-12-01

Full Text Available The fuel used in the aviation engineering has to be clean and dry, it may not contain mechanical impurities and water. Water inaviation kerosene may occur in soluble and insoluble form. The danger inheres in the insoluble form, which may drop out in the crystallineform and cause various failures, such as those caused by mechanical impurities. The water assists in the biological matter formation createdby various species of microorganisms (bacteria, mould fungi and yeast. The microorganisms, present in water phase occurring on thebottom of tanks or on the interface water phase – kerosene, grow and reproduce and subsequently may pollute (impair the fuel by thebiomass or by the products of their metabolism. There is a possibility to infect the fuel artificially by a selected reference microorganismstrain, which usually occur in contaminated fuel, or by microorganisms which cause a biological contamination of aviation kerosene.Out of the selected reference strains used in the experiments, the reference strains of Proteus vulgaris, Sacharamyces cerevisiae andClostridium perfringens were not cultivated in the sterile aviation kerosene and the propagating nutrient medium. The aviation kerosene actsas a biocide medium for the presented reference microorganism strains.

Optimal control of the process of cultivation in the conditions of infection

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N. V. Sukhanova

2016-01-01

Full Text Available The article presents a way of solving of the optimal control problem of antibiotic feeding under condition of infection, consisting in the selection of the optimal control in the field of admissible control, with the aim of achieving a compromise between the losses in production due to the presence of foreign microflora, and the cost of its suppression due to the application of antibiotic. The presence of other microorganisms in the finished product, in particular of the “wild“ ones, considerably impairs the quality indicators of the final product (in particular, it reduces the storage time. In peculiar conditions of production it is possible to improve the quality of target product due to elimination of infection, including, when used antibiotics in the process of cultivation, but due to the lack of efficient algorithms and control systems of their supply the question is still open. We use the system of Lotka-Volterra adapted for microbiological process as a mathematical model adequately describing the situation of competitive interaction of two populations of microorganisms (useful and “wild“ ones due to the consumption of one resource. The aim is to find a control law U(t belonging to the field of admissible control. The control that affords minimum to the optimization criterion in accordance with the principle of maximum is defined by the condition of the maximum of Hamilton function and the resulting canonical system of equations. The modified conjugated system of equations in matrix form is obtained. The solution of system of differential-different equations in the analytical form is found using the method of coordinate transformation. As a result an optimal control law is found (with regard to the selected criterion. This is the control law of application of the antibiotic, allowing to control the concentration of foreign microflora in the process of cultivation of microorganisms and accounting for the specific

Producing Biosurfactants from Purified Microorganisms Obtained from Oil-contaminated Soil

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Nader Mokhtarian

2010-09-01

Full Text Available Contamination of soil by crude oil can pose serious problems to ecosystems. Soil washing by solutions containing biosurfactants is one of the most efficient methods for the remediation of contaminated soil by crude oil because it removes not only the crude oil but also heavy metals. In this study, five soil samples were taken from fields exposed to oil compounds over the years in order to produce biosurfactants from microorganisms that were capable of degrading oil compounds. Sixteen such microorganisms were isolated. After cultivation, their emulsification strength was examined using E24 test. From among the experimental microorganisms, a gram-negative and rod-shape microorganism called A-12 showed the greatest value of the E24 test index (36%. For each liter of the culture medium containing 365 mg of microorganisms, 3 gr of the biosurfactant compound was produced and separated as dried powder. The purified biosurfactant was used in the soil washing process. Also, the insulated microorganisms were capable of degrading crude oil floating on wastewaters.

The role of microorganisms in the mobility of radionuclides in soil. I. Examination of resistance to strontium, cesium, cobalt and zinc

International Nuclear Information System (INIS)

Konyi, J.; Koska, P.; Berzsenyi, G.; Gazso, L.G.; Appanna, V.D.

1997-01-01

132 microorganisms were isolated from cultivated soils sampled near a nuclear power plant. Quantitative and qualitative analysis was made concerning the macro-morphology, micro-morphology and Gram staining. Resistance of microorganisms to strontium, cesium, cobalt and zinc was determined using agar plates containing metals. Cobalt and zinc proved to be toxic at a concentration of 100 mg/l, but strontium and cesium did not inhibit the growth even at the concentration up to 200 mg/l. Results of analyses of mechanisms of zinc resistance by photometry and spectral analysis also presented. (author)

Generation of PHB from Spent Sulfite Liquor Using Halophilic Microorganisms.

Science.gov (United States)

Weissgram, Michaela; Gstöttner, Janina; Lorantfy, Bettina; Tenhaken, Raimund; Herwig, Christoph; Weber, Hedda K

2015-06-08

Halophilic microorganisms thrive at elevated concentrations of sodium chloride up to saturation and are capable of growing on a wide variety of carbon sources like various organic acids, hexose and also pentose sugars. Hence, the biotechnological application of these microorganisms can cover many aspects, such as the treatment of hypersaline waste streams of different origin. Due to the fact that the high osmotic pressure of hypersaline environments reduces the risk of contamination, the capacity for cost-effective non-sterile cultivation can make extreme halophilic microorganisms potentially valuable organisms for biotechnological applications. In this contribution, the stepwise use of screening approaches, employing design of experiment (DoE) on model media and subsequently using industrial waste as substrate have been implemented to investigate the applicability of halophiles to generate PHB from the industrial waste stream spent sulfite liquor (SSL). The production of PHB on model media as well as dilutions of industrial substrate in a complex medium has been screened for by fluorescence microscopy using Nile Blue staining. Screening was used to investigate the ability of halophilic microorganisms to withstand the inhibiting substances of the waste stream without negatively affecting PHB production. It could be shown that neither single inhibiting substances nor a mixture thereof inhibited growth in the investigated range, hence, leaving the question on the inhibiting mechanisms open. However, it could be demonstrated that some haloarchaea and halophilic bacteria are able to produce PHB when cultivated on 3.3% w/w dry matter spent sulfite liquor, whereas H. halophila was even able to thrive on 6.6% w/w dry matter spent sulfite liquor and still produce PHB.

Culture-Dependent and -Independent Methods to Investigate the Predominant Microorganisms Associated with Wet Processed Coffee.

Science.gov (United States)

Feng, Xiaomin; Dong, Honghong; Yang, Pan; Yang, Ruijuan; Lu, Jun; Lv, Jie; Sheng, Jun

2016-08-01

The fermentation process of Yunnan arabica coffee is a typical wet fermentation. Its excellent quality is closely related to microbes in the process of fermentation. The purpose of this study was to isolate and identify the microorganisms in the wet method of coffee processing in Yunnan Province, China. Microbial community structure and dominant bacterial species were evaluated by traditional cultivated separation method and PCR-DGGE technology, and were further analyzed in combination with the changes of organic acid content, activity of pectinase, and physical parameters (pH and temperature). A large number of microorganisms which can produce pectinase were found. Among them, Enterobacter cowanii, Pantoea agglomerans, Enterobacteriaceae bacterium, and Rahnella aquatilis were the predominant gram-negative bacteria, Bacillus cereus was the predominant gram-positive bacterium, Pichia kluyveri, Hanseniaspora uvarum, and Pichia fermentans were the predominant yeasts, and all those are pectinase-producing microorganisms. As for the contents of organic acids, oxalic was the highest, followed by acetic and lactic acids. Butyrate and propionate, which were unfavorable during the fermentation period, were barely discovered.

Use of cultivation-dependent and -independent techniques to assess contamination of central venous catheters: a pilot study

Directory of Open Access Journals (Sweden)

Høiby Niels

2008-10-01

Full Text Available Abstract Background Catheters are the most common cause of nosocomial infections and are associated with increased risk of mortality, length of hospital stay and cost. Prevention of infections and fast and correct diagnosis is highly important. Methods In this study traditional semiquantitative culture-dependent methods for diagnosis of bacteria involved in central venous catheter-related infections as described by Maki were compared with the following culture-independent molecular biological methods: Clone libraries, denaturant gradient gel electrophoresis, phylogeny and fluorescence in situ hybridization. Results In accordance with previous studies, the cultivation of central venous catheters from 18 patients revealed that S. epidermidis and other coagulase-negative staphylococci were most abundant and that a few other microorganisms such as P. aeruginosa and K. pneumoniae occasionally were found on the catheters. The molecular analysis using clone libraries and sequencing, denaturant gradient gel electrophoresis and sequencing provided several important results. The species found by cultivation were confirmed by molecular methods. However, many other bacteria belonging to the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes were also found, stressing that only a minor portion of the species present were found by cultivation. Some of these bacteria are known to be pathogens, some have not before been described in relation to human health, and some were not closely related to known pathogens and may represent new pathogenic species. Furthermore, there was a clear difference between the bacterial species found in biofilm on the external (exluminal and internal (luminal side of the central venous catheter, which can not be detected by Maki's method. Polymicrobial biofilms were observed on most of the catheters and were much more common than the cultivation-dependent methods indicated. Conclusion The results show that diagnosis

Impact of microorganism on polonium volatilization

International Nuclear Information System (INIS)

Momoshima, N.; Ishida, A.; Fukuda, A.; Yoshinaga, C.

2007-01-01

Volatilization of polonium by microorganisms, Chromobacterium violaceum, Escherichia coli and Bacillus subtilis was examined for pure cultures in LB medium at 30 deg C, showing relative Po emission intensity 100, 10 and 1, respectively. Chromobacterium violaceum pre-cultured in LB medium without Po and suspended in water with Po showed high Po volatilization in spite of poor nutriment condition. Antibiotics inhibit volatilization of Po and cultivation at low temperature greatly reduced volatilization. The results strongly support the biological effects on Po volatilization. (author)

Accompaniment of the biomass growth and synthesis of biosurfactants by microorganism isolated in oil wells; Acompanhamento do crescimento da biomassa e sintese de biosurfactantes por microorganismos isolados de pocos de petroleo

Energy Technology Data Exchange (ETDEWEB)

Lobato, Ana Katerine de Carvalho Lima; Araujo, Manuelle Meike Silva de [Rio Grande do Norte Univ., Natal, RN (Brazil). Programa de Pos-graduacao em Engenharia Quimica]. E-mail: manuelle@eq.ufrn.br; Macedo, Gorete Ribeiro de [Rio Grande do Norte Univ., Natal, RN (Brazil). Dept. de Engenharia Quimica

2003-07-01

Biosurfactants are structurally diversified groups of active surface molecules synthesized by microorganisms as bacteria and fungi, cultivated in several carbon sources such as sucrose and hydrocarbons. These molecules, composed by a part hydrophilic and other hydrophobic one, they act preferentially in the interface among the flowing phases with different polarities linking interfaces oil/water or water/oil reducing the superficial tensions and interfacial among these phases. They have been used in environmental applications, such as bioremediation of soils, treatment of contaminated water fountains and in cleaning process of tanks and equipment. Oil reservoirs present conditions where some microorganisms can grow. These microorganisms when isolated and cultivated at laboratory can be characterized with relation to surfactants production. In this work, microorganisms were isolated of oil wells and the biosurfactants producers were selected, among the isolated ones, to form a culture bank with potential application in environmental pollution treatment and advanced oil recovery. A microorganism stump of the developed bank was cultivated in sucrose and hydrocarbon medium and the biosurfactant production was evaluated by superficial tension measurement. The microorganism biomass production was evaluated by optical density using a spectrophotometer and the substratum consumption by Dns method. (author)

Improved Method for Direct Detection of Environmental Microorganisms Using an Amplification of 16S rDNA Region

Science.gov (United States)

Tsujimura, M.; Akutsu, J.; Zhang, Z.; Sasaki, M.; Tajima, H.; Kawarabayasi, Y.

2004-12-01

The thermostable proteins or enzymes were expected to be capable to be utilized in many areas of industries. Many thermophilic microorganisms, which possess the thermostable proteins or enzymes, were identified from the extreme environment. However, many unidentified and uncultivable microorganisms are still remaining in the environment on the earth. It is generally said that the cultivable microorganisms are less than 1% of entire microorganisms living in the earth, remaining over 99% are still uncultivable. As an approach to the uncultivable microorganisms, the PCR amplification of 16S rDNA region using primer sets designed from the conserved region has been generally utilized for detection and community analysis of microorganism in the environment. However, the facts, that PCR amplification introduces the mutation in the amplified DNA fragment and efficiency of PCR amplification is depend on the sequences of primer sets, indicated that the improving of PCR analysis was necessary for more correct detection of microorganisms. As the result of evaluation for the quality of DNA polymerases, sequences of primers used for amplification and conditions of PCR amplification, the DNA polymerase, the primer set and the conditions for amplification, which did not amplify the DNA fragment from the DNA contaminated within the DNA polymerase itself, were successfully selected. Also the rate of mutation in the DNA fragment amplified was evaluated using this conditions and the genomic DNA from cultivable microbes as a template. The result indicated the rate of mutation introduced by PCR was approximately 0.1% to 0.125%. The improved method using these conditions and error rate calculated was applied for the analysis of microorganisms in the geothermal environment. The result indicated that four kinds of dominant microorganisms, including both of bacteria and archaea, were alive within soil in the hot spring in Tohoku Area. We would like to apply this improved method to detection

The first collection of spacecraft-associated microorganisms: a public source for extremotolerant microorganisms from spacecraft assembly clean rooms.

Science.gov (United States)

Moissl-Eichinger, Christine; Rettberg, Petra; Pukall, Rüdiger

2012-11-01

For several reasons, spacecraft are constructed in so-called clean rooms. Particles could affect the function of spacecraft instruments, and for missions under planetary protection limitations, the biological contamination has to be restricted as much as possible. The proper maintenance of clean rooms includes, for instance, constant control of humidity and temperature, air filtering, and cleaning (disinfection) of the surfaces. The combination of these conditions creates an artificial, extreme biotope for microbial survival specialists: spore formers, autotrophs, multi-resistant, facultative, or even strictly anaerobic microorganisms have been detected in clean room habitats. Based on a diversity study of European and South-American spacecraft assembly clean rooms, the European Space Agency (ESA) has initialized and funded the creation of a public library of microbial isolates. Isolates from three different European clean rooms, as well as from the final assembly and launch facility in Kourou (French Guiana), have been phylogenetically analyzed and were lyophilized for long-term storage at the German Culture Collection facilities in Brunswick, Germany (Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen). The isolates were obtained by either following the standard protocol for the determination of bioburden on, and around, spacecraft or the use of alternative cultivation strategies. Currently, the database contains 298 bacterial strains. Fifty-nine strains are Gram-negative microorganisms, belonging to the α-, β- and γ-Proteobacteria. Representatives of the Gram-positive phyla Actinobacteria, Bacteroidetes/Chlorobi, and Firmicutes were subjected to the collection. Ninety-four isolates (21 different species) of the genus Bacillus were included in the ESA collection. This public collection of extremotolerant microbes, which are adapted to a complicated artificial biotope, provides a wonderful source for industry and research focused on

Iron cycling potentials of arsenic-contaminated groundwater in Bangladesh as revealed by enrichment cultivation.

NARCIS (Netherlands)

Hassan, Z.; Sultana, M.; Westerhoff, H.V.; Khan, S.I.; Roling, W.F.M.

2015-01-01

The activities of iron-oxidizing and reducing microorganisms impact the fate of arsenic in groundwater. Phylogenetic information cannot exclusively be used to infer the potential for iron oxidation or reduction in aquifers. Therefore, we complemented a previous cultivation-independent microbial

Microorganisms associated with feathers of barn swallows in radioactively contaminated areas around chernobyl.

Science.gov (United States)

Czirják, Gábor Arpád; Møller, Anders Pape; Mousseau, Timothy A; Heeb, Philipp

2010-08-01

The Chernobyl catastrophe provides a rare opportunity to study the ecological and evolutionary consequences of low-level, environmental radiation on living organisms. Despite some recent studies about negative effects of environmental radiation on macroorganisms, there is little knowledge about the effect of radioactive contamination on diversity and abundance of microorganisms. We examined abundance patterns of total cultivable bacteria and fungi and the abundance of feather-degrading bacterial subset present on feathers of barn swallows (Hirundo rustica), a colonial migratory passerine, around Chernobyl in relation to levels of ground level environmental radiation. After controlling for confounding variables, total cultivable bacterial loads were negatively correlated with environmental radioactivity, whereas abundance of fungi and feather-degrading bacteria was not significantly related to contamination levels. Abundance of both total and feather-degrading bacteria increased with barn swallow colony size, showing a potential cost of sociality. Males had lower abundance of feather-degrading bacteria than females. Our results show the detrimental effects of low-level environmental radiation on total cultivable bacterial assemblage on feathers, while the abundance of other microorganism groups living on barn swallow feathers, such as feather-degrading bacteria, are shaped by other factors like host sociality or host sex. These data lead us to conclude that the ecological effects of Chernobyl may be more general than previously assumed and may have long-term implications for host-microbe interactions and overall ecosystem functioning.

Progress in decontamination by halophilic microorganisms in saline wastewater and soil

International Nuclear Information System (INIS)

Zhuang Xuliang; Han Zhen; Bai Zhihui; Zhuang Guoqiang; Shim Hojae

2010-01-01

Environments with high-salt concentrations are often populated by dense microbial communities. Halophilic microorganisms can be isolated from different saline environments and different strains even belonging to the same genus have various applications. Wastewater and soil rich in both organic matter and salt are difficult to treat using conventional microorganisms typically found in wastewater treatment and soil bioremediation facilities. Studies on decontaminative capabilities and decontamination pathways of organic contaminants (i.e., aromatic compounds benzoate, cinnamate, 3-phenylpropionate, 4-hydroxybenzoic acid), heavy metals (i.e., tellurium, vanadium), and nutrients in the biological treatment of saline wastewater and soil by halophilic microorganisms are discussed in this review. - Review on the decontaminative capabilities of halophilic microorganisms in saline wastewater and soil.

Progress in decontamination by halophilic microorganisms in saline wastewater and soil

Energy Technology Data Exchange (ETDEWEB)

Zhuang Xuliang, E-mail: xlzhuang@rcees.ac.c [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing 100085 (China); Bureau of Science and Technology for Resources and Environment, Chinese Academy of Sciences, Beijing 100864 (China); Han Zhen [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing 100085 (China); Graduate University of Chinese Academy of Sciences, Beijing 100049 (China); Bai Zhihui; Zhuang Guoqiang [Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian District, Beijing 100085 (China); Shim Hojae [Department of Civil and Environmental Engineering, Faculty of Science and Technology, University of Macau, Macau (China)

2010-05-15

Environments with high-salt concentrations are often populated by dense microbial communities. Halophilic microorganisms can be isolated from different saline environments and different strains even belonging to the same genus have various applications. Wastewater and soil rich in both organic matter and salt are difficult to treat using conventional microorganisms typically found in wastewater treatment and soil bioremediation facilities. Studies on decontaminative capabilities and decontamination pathways of organic contaminants (i.e., aromatic compounds benzoate, cinnamate, 3-phenylpropionate, 4-hydroxybenzoic acid), heavy metals (i.e., tellurium, vanadium), and nutrients in the biological treatment of saline wastewater and soil by halophilic microorganisms are discussed in this review. - Review on the decontaminative capabilities of halophilic microorganisms in saline wastewater and soil.

Improved cultivation and metagenomics as new tools for bioprospecting in cold environments

DEFF Research Database (Denmark)

Vester, Jan Kjølhede; Glaring, Mikkel Andreas; Stougaard, Peter

2015-01-01

Only a small minority of microorganisms from an environmental sample can be cultured in the laboratory leaving the enormous bioprospecting potential of the uncultured diversity unexplored. This resource can be accessed by improved cultivation methods in which the natural environment is brought...... be limited as few hosts are available for expression of genes with extremophilic properties. This review summarizes the methods developed for improved cultivation as well as the metagenomic approaches for bioprospecting with focus on the challenges faced by bioprospecting in cold environments....

Radionuclides difficult to measure in waste packages. Final report

Energy Technology Data Exchange (ETDEWEB)

Thierfeldt, S; Deckert, A [Brenk Systemplanung, Aachen (Germany)

1995-11-01

In this study nuclide specific correlation analyses between key nuclides that can be easily measured and nuclides that are difficult to measure are presented. Data are taken from studies and data compilations from various countries. The results of this study can serve to perform assays of the nuclide specific radionuclide contents in waste packages by gamma measurements of {sup 60}Co and {sup 137}Cs and calculation of the contents of other nuclides via the correlation analyses, sometimes referred to as `scaling factor method`. It can thus be avoided to have to take samples from the waste for separate analysis. An attempt is made to also investigate the physical and chemical backgrounds behind the proposed correlations. For example, a formation pathway common to the two nuclides to be correlated can be regarded as an explanation, if a good correlation is found. On the other hand, if the observed correlation is of poor quality, reasons may possibly lie in different behaviour of the two nuclides in the water system of the nuclear plant. This implies not only chemical solubility, transfer constants etc. in the water system, which would not only affect the proportionality between the two nuclides, but a different behavior in different parts of the water system must be assumed (e.g. different filter efficiencies etc). 47 refs, 57 figs, 40 tabs.

Application of Hazard Analysis and Critical Control Points (HACCP) to the Cultivation Line of Mushroom and Other Cultivated Edible Fungi.

Science.gov (United States)

Pardo, José E; de Figueirêdo, Vinícius Reis; Alvarez-Ortí, Manuel; Zied, Diego C; Peñaranda, Jesús A; Dias, Eustáquio Souza; Pardo-Giménez, Arturo

2013-09-01

The Hazard analysis and critical control points (HACCP) is a preventive system which seeks to ensure food safety and security. It allows product protection and correction of errors, improves the costs derived from quality defects and reduces the final overcontrol. In this paper, the system is applied to the line of cultivation of mushrooms and other edible cultivated fungi. From all stages of the process, only the reception of covering materials (stage 1) and compost (stage 3), the pre-fruiting and induction (step 6) and the harvest (stage 7) have been considered as critical control point (CCP). The main hazards found were the presence of unauthorized phytosanitary products or above the permitted dose (stages 6 and 7), and the presence of pathogenic bacteria (stages 1 and 3) and/or heavy metals (stage 3). The implementation of this knowledge will allow the self-control of their productions based on the system HACCP to any plant dedicated to mushroom or other edible fungi cultivation.

[Modification of the Hungate vessel for cultivation of facultative and obligate anaerobic bacteria].

Science.gov (United States)

Chernyshenko, D V

2000-01-01

Modified Hungate vessel made of native penicillinum bottles and chemical vessels has been created and experimentally studied. The vessels can be used for cultivation of facultative and obligate anaerobe microorganisms on liquid and solid nutrient media. Locking devices of the vessel are described.

Diversity of microorganisms isolated from the soil sample surround Chroogomphus rutilus in the Beijing region

DEFF Research Database (Denmark)

Wang, P; Liu, Y; Yin, Y

2011-01-01

to isolate and classify beneficial microorganisms that could affect its growth, which could be used in future research on artificial cultivation. In total, 342 isolates were isolated from soil samples collected around a C. rutilus colony in the Beijing region. Of these, 22 bacterial and 14 fungal isolates...

Adsorption of aflatoxin B1, zearalenone and ochratoxin A by microorganisms isolated from Kefir grains.

Science.gov (United States)

Taheur, Fadia Ben; Fedhila, Kais; Chaieb, Kamel; Kouidhi, Bochra; Bakhrouf, Amina; Abrunhosa, Luís

2017-06-19

A strategy to reduce the deleterious effects of mycotoxins is to use dietary supplements that contain microorganisms that bind mycotoxins and decrease their gastrointestinal absorption. Novel strains were isolated from a Kefir culture and assessed for their mycotoxin adsorption and biotransformation ability. The most active strains were identified using DNA sequencing, and the stability of microorganism/mycotoxin complexes was evaluated using buffer solutions to simulate the pH conditions in the gastrointestinal tract. Our results showed that the microorganism consortium of Kefir grains adsorbed 82 to 100% of aflatoxin B1 (AFB1), zearalenone (ZEA) and ochratoxin A (OTA) when cultivated in milk. The main strains that were capable of mycotoxin adsorption were identified as Lactobacillus kefiri, Kazachstania servazzii and Acetobacter syzygii. The strain L. kefiri KFLM3 was the most active, adsorbing 80 to 100% of the studied mycotoxins when cultivated in milk. Nonetheless, the strain K. servazzii KFGY7 retained more mycotoxin after the desorption experiments (65, 69 and 67% for AFB1, OTA and ZEA, respectively). These findings suggest that Kefir consumption may help to reduce gastrointestinal absorption of these mycotoxins and consequently reduce their toxic effects. The isolated strains may be of interest for the development of fermented dairy products for human consumption that have a new probiotic characteristic, the adsorption of mycotoxins. Copyright © 2017 Elsevier B.V. All rights reserved.

Microbiota of radish plants, cultivated in closed and open ecological systems

Science.gov (United States)

Tirranen, L. S.

It is common knowledge that microorganisms respond to environmental changes faster than other representatives of the living world. The major aim of this work was to examine and analyze the characteristics of the microbiota of radish culture, cultivated in the closed ecological system of human life-support Bios-3 and in an open system in different experiments. Microbial community of near-root, root zone and phyllosphere of radish were studied at the phases of seedlings, root formation, technical ripeness—by washing-off method—like microbiota of the substrate (expanded clay aggregate) and of the seeds of radish culture. Inoculation on appropriate media was made to count total quantity of anaerobic and aerobic bacteria, bacteria of coliform group, spore-forming, Proteus group, fluorescent, phytopathogenic bacteria, growing on Fermi medium, yeasts, microscopic fungi, Actinomyces. It was revealed that formation of the microbiota of radish plants depends on the age, plant cultivation technology and the specific conditions of the closed system. Composition of microbial conveyor-cultivated in phytotrons varied in quality and in quantity with plant growth phases—in the same manner as cultivation of even-aged soil and hydroponics monocultures which was determined by different qualitative and quantitative composition of root emissions in the course of plant vegetation. The higher plant component formed its own microbial complex different from that formed prior to closure. The microbial complex of vegetable polyculture is more diverse and stable than the monoculture of radish. We registered the changes in the species composition and microorganism quantity during plant cultivation in the closed system on a long-used solution. It was demonstrated that during the short-term (7 days) use of the nutrient solution in the experiments without system closing, the species composition of the microbiota of radish plants was more diverse in a multiple-aged vegetable polyculture (61

78 FR 42451 - Animal Feeds Contaminated With Salmonella Microorganisms

Science.gov (United States)

2013-07-16

.... FDA-2013-N-0253] Animal Feeds Contaminated With Salmonella Microorganisms AGENCY: Food and Drug... revoking an advisory opinion on animal feeds contaminated with Salmonella microorganisms. This action is... articulated in a final compliance policy guide (CPG) on Salmonella in food for animals. DATES: This rule is...

Microbial deterioration of vacuum-packaged chilled beef cuts and techniques for microbiota detection and characterization: a review

Directory of Open Access Journals (Sweden)

Maria Lucila Hernández-Macedo

2011-03-01

Full Text Available Gas production from microbial deterioration in vacuum-packs of chilled meat leads to pack distension, which is commonly referred as blown pack. This phenomenon is attributed to some psychrophilic and psychrotrophic Clostridium species, as well as Enterobacteria. The ability of these microorganisms to grow at refrigeration temperatures makes the control by the meat industry a challenge. This type of deterioration has been reported in many countries including some plants in the Midwestern and Southeastern regions of Brazil. In addition to causing economic losses, spoilage negatively impacts the commercial product brand, thereby impairing the meat industry. In the case of strict anaerobes species they are difficult to grow and isolate using culture methods in conventional microbiology laboratories. Furthermore, conventional culture methods are sometimes not capable of distinguishing species or genera. DNA-based molecular methods are alternative strategies for detecting viable and non-cultivable microorganisms and strict anaerobic microorganisms that are difficult to cultivate. Here, we review the microorganisms and mechanisms involved in the deterioration of vacuum-packaged chilled meat and address the use of molecular methods for detecting specific strict anaerobic microorganisms and microbial communities in meat samples.

A multi-platform flow device for microbial (co- cultivation and microscopic analysis.

Directory of Open Access Journals (Sweden)

Matthijn C Hesselman

Full Text Available Novel microbial cultivation platforms are of increasing interest to researchers in academia and industry. The development of materials with specialized chemical and geometric properties has opened up new possibilities in the study of previously unculturable microorganisms and has facilitated the design of elegant, high-throughput experimental set-ups. Within the context of the international Genetically Engineered Machine (iGEM competition, we set out to design, manufacture, and implement a flow device that can accommodate multiple growth platforms, that is, a silicon nitride based microsieve and a porous aluminium oxide based microdish. It provides control over (co-culturing conditions similar to a chemostat, while allowing organisms to be observed microscopically. The device was designed to be affordable, reusable, and above all, versatile. To test its functionality and general utility, we performed multiple experiments with Escherichia coli cells harboring synthetic gene circuits and were able to quantitatively study emerging expression dynamics in real-time via fluorescence microscopy. Furthermore, we demonstrated that the device provides a unique environment for the cultivation of nematodes, suggesting that the device could also prove useful in microscopy studies of multicellular microorganisms.

Color-Removal by Microorganisms Isolated from Human Hands

Directory of Open Access Journals (Sweden)

Tsukasa Ito

2013-08-01

Full Text Available Microorganisms are essential for human life. Microorganisms decompose the carbon compounds in dead animals and plants and convert them into carbon dioxide. Intestinal bacteria assist in food digestion. Some vitamins are produced by bacteria that live in the intestines. Sewage and industrial wastewater are treated by activated sludge composed of microbial communities. All of these are due to the ability of microbes to produce many enzymes that can degrade chemicals. How do teachers make students understand that microorganisms are always associated with humans, and that microorganisms have the ability to degrade chemicals? The presence of microorganisms on humans can be shown by incubating agar plates after they are touched by the hands of students. The ability of microorganisms to degrade chemicals can be shown by an analytical measurement of the degradation of chemicals. When the chemicals are dyes (colorants in water, microbial activity on degradation of dyes can be demonstrated by observing a decreasing degree of color as a result of the enzymatic activity (e.g., azoreductase. Dyes are widely used in the textile, food, and cosmetic industries. They are generally resistant to conventional biological wastewater treatment systems such as the activated sludge process (4. The discharge of wastewater containing dye pollutes surface water. The ability of microorganisms to decolorize and degrade dyes has been widely investigated to use for bioremediation purposes (5. The goal of this tip is to understand the presence of bacteria on human skin and the ability of bacteria to degrade colorant chemicals (decolorization. In this tip, students first cultivate and isolate bacteria on their hands, and then examine potential decolorization activity of each bacterium by observing the degree of color of the liquid in tubes in which bacteria isolated from students’ hands were inoculated. Decolorization activity of bacterial isolates from human skin has been

System for identification of microorganism and detection of infectious disorder

DEFF Research Database (Denmark)

2013-01-01

Methods for the identification of microorganisms or infectious disorders are disclosed, comprising obtaining a suitable sample from sources such as persons, animals, plants, food, water or soil. The methods also comprise providing tailored nucleic acid substrate(s) designed to react with a type 1...... topoisomerase from one or more microorganism(s) or infectious agent(s), and incubating said substrate with said sample, or extracts or preparations from the sample, so that the substrate is processed by said topoisomerase if said microorganism(s) or infectious agent(s) is present in the sample. Finally......, processed substrates are identified and potentially quantified by one or more of a range of standard molecular biology methods and read-out systems. The identification and potential quantification of microorganisms and infectious agents, including but not limited to Plasmodium falciparum and Mycobacterium...

Semicontinuous cultivation of the cyanobacterium Spirulina platensis in a closed photobioreactor

Directory of Open Access Journals (Sweden)

C. C. Reichert

2006-03-01

Full Text Available The cultivation of photosynthetic microorganisms such as the cyanobacterium Spirulina platensis has been studied by researchers in many countries because these organisms can produce products with industrial potential. We studied the specific growth rate (µx, day-1 and productivity (Px, in mg/L/day of Spirulina platensis biomass, dry weight basis of two S. platensis strains (LEB-52 and Paracas growing in aerated semicontinuous culture in two-liter Erlenmeyer flasks for 90 days (2160 h at 30°C under 2500 lux of illumination in a 12 h photoperiod. Independent of the S. platensis strain used we found that low biomass concentrations (0.50 g/L and high renewal rates (50% v/v resulted in a high specific growth rate (µx = 0.111 day-1 and high productivity (Px = 42.3 mg/L/day. These values are two to four times higher than those obtained in simple batch cultivation and indicate that the semicontinuous cultivation of S. platensis is viable.

SELECTION OF MICROORGANISMS FOR FERMENTATION OF MEAT MATERIALS

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Danylenko S. G.

2014-08-01

Full Text Available Principal criteria for the selection of microorganisms with a wide range of biological and technological properties for fermentation of raw meats are considered. Attention is paid to the main groups of microorganisms such as Micrococсus, Staphylococcus, Lactobacillus, Bifidobacterium and Propionibacterium which are promising for creation of bacterial preparations. To create bacterial preparations, the basic criteria of selection for microorganisms were determined as follows: the ability of microorganisms to be developed within the specific ecological niche (raw meat materials and their influence on flavor characteristics of the final product under the conditions of intensification of production technologies of meat products. Methods used for search and retrieval of technologically promising strains from different natural sources (fresh meats, minced meats, meat, dairy and sour-milk products, vegetables, fruit, brines and mixtures for salting are considered.

Photoautotrophic microorganisms and bioremediation of industrial effluents: current status and future prospects.

Science.gov (United States)

Brar, Amandeep; Kumar, Manish; Vivekanand, Vivek; Pareek, Nidhi

2017-05-01

Growth of the industrial sector, a result of population explosion has become the root cause of environmental deterioration and has raised the concerns for efficient wastewater management and reuse. Photoautotrophic cultivation of microorganisms is a boon and considered as a potential biological treatment for remediation of wastewater as it sequesters CO 2 during growth. Photoautotrophs viz. cyanobacteria, micro-algae and macro-algae can photosynthetically assimilate the excessive pollutants present in the wastewater. The present review emphasizes on the achievability of microorganisms to bestow wastewater as the nutrient source for biomass production, which can further be reused for feed, food and fertilizers. To support this, various case studies have been cited that prove phycoremediation as a cost-effective and sustainable process over conventional wastewater treatment processes that requires high chemical load and more energy inputs.

The influence of co-cultivation on expression of the antifungal protein in Aspergillus giganteus.

Science.gov (United States)

Meyer, Vera; Stahl, Ulf

2003-01-01

The afp gene of Aspergillus giganteus encodes a small, highly basic polypeptide with antifungal activity, named Antifungal Protein (AFP). The protein is secreted by the mould and inhibits the growth of various filamentous fungi. In this paper we report that co-cultivation of A. giganteus with various microorganisms alters afp expression. It was found that co-cultivation modulates afp expression on the level of transcription, using a reporter system based on the beta-glucuronidase gene. The presence of Fusarium oxysporum triggered afp transcription whereas dual cultures of A. giganteus and A. niger resulted in suppression of afp transcription. Growth tests performed with several carbon and nitrogen sources, revealed that the influence of co-cultivation is strongly dependent on the medium composition.

An Evaluation Method for the Suppression of Pathogenic Fusarium oxysporum by Soil Microorganisms Using the Dilution Plate Technique.

Science.gov (United States)

Mitsuboshi, Masahiro; Kioka, Yuuzou; Noguchi, Katsunori; Asakawa, Susumu

2016-09-29

Soil-borne diseases caused by pathogenic microorganisms are one of the main factors responsible for the decline in crop yields in farmlands. Pathogenic Fusarium oxysporum causes serious damage to various crops, and, thus, a feasible diagnostic method for soil-borne diseases is required. We herein examined a simple method to evaluate the suppressiveness of soil microorganisms against a pathogen by co-cultivating indigenous soil microorganisms and a pathogenic fungus (F. oxysporum f. sp. spinaciae). We inoculated F. oxysporum onto the center of agar medium plates mixed with a dilution series of a suspension of organic fertilizers or soil. After an approximately one-week cultivation, the growth degree of F. oxysporum was estimated based on the size of the colonies that formed on the plates. The growth degree of F. oxysporum significantly differed among the organic fertilizers tested, indicating the usefulness of the method for evaluating suppressiveness by organic fertilizers. Differences in the growth degrees of F. oxysporum were associated with the incidence of disease in spinach on soil treated with organic fertilizers and inoculated with a pathogenic F. oxysporum strain. These results suggested that this method provides some useful information on the suppressiveness of organic fertilizers and soil against Fusarium wilt.

DENTINE CARIES: ACID-TOLERANT MICROORGANISMS AND ASPECTS ON COLLAGEN DEGRADATION.

Science.gov (United States)

Lager, Anders Hedenbjörk

2014-01-01

Dental caries is a common disease all over the world, despite the fact that it can be both effectively prevented and treated. It is driven by acids produced by oral microorganisms as a consequence of their metabolism of dietary carbohydrates. Given enough acid challenge, eventually the tooth enamel barrier will be broken down, and the carious lesion will extend into underlying hard tissue, forming a macroscopic cavity in the dentine. In comparison to biofilm on enamel, a dentine carious lesion provides a vastly different environment for the residing microorganisms. The environment influences the types and numbers of microorganisms that can colonize the dentine caries lesion. The overall aims for this thesis are to enumerate and further study microorganisms found in established dentine caries lesions and also to illuminate how host-derived proteolytic enzymes might contribute to this degradation, not only to better understand the caries process in dentine but also to find incitements for new methods to influence the natural progression of caries lesions. In Paper I, the numbers of remaining viable microorganisms after completed excavation using two excavation methods were investigated. Samples of carious dentine tissue were collected before and after excavation and cultivated on different agar media in different atmospheres. Analysis was performed by counting the number of colony-forming units (CFUs). Key findings: The number of remaining microorganisms after excavation was low for both methods, but some microorganisms always remained in the cavity floors even when the cavities were judged as caries free using normal clinical criteria. In Paper II, the acid tolerant microbiota in established dentine caries lesions was investigated. Samples were taken as in Paper I, but on three levels (superficial, center of lesion, floor of lesion after completed excavation). The samples were cultivated in anaerobic conditions on solid pH-selective agar media of different acidity

Impact of silver ions and silver nanoparticles on the plant growth and soil microorganisms

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D. Tomacheski

2017-12-01

Full Text Available There is a growing consumer market for products that proclaim to decrease microorganism counts to prevent infections. Most of these products are loaded with silver in its ionic or nanoparticle form. Through use or during production, these particles can find their way into the soil and cause an impact in microbial and plant communities. This study aims to evaluate the impact of silver based particles in Avena byzantina (oat, Lactuca sativa (lettuce and Raphanus sativus (radish development and in the soil microorganism abundance. Oat, lettuce and radish plants were cultivated in soil contaminated with particles of bentonite organomodified with silver (Ag+_bentonite, silver phosphate glass (Ag+_phosphate and silver nanoparticles adsorbed on fumed silica (AgNp_silica. Plant development and microorganisms’ abundance were evaluated. To some degree, Ag+_bentonite impacted plants development and AgNp_silica causes an adverse effect on microbial abundance. The impact on plants and microorganisms was contradictory and varied according to soil and particles physicochemical characteristics.

Cultivating the Deep Subsurface Microbiome

Science.gov (United States)

Casar, C. P.; Osburn, M. R.; Flynn, T. M.; Masterson, A.; Kruger, B.

2017-12-01

Subterranean ecosystems are poorly understood because many microbes detected in metagenomic surveys are only distantly related to characterized isolates. Cultivating microorganisms from the deep subsurface is challenging due to its inaccessibility and potential for contamination. The Deep Mine Microbial Observatory (DeMMO) in Lead, SD however, offers access to deep microbial life via pristine fracture fluids in bedrock to a depth of 1478 m. The metabolic landscape of DeMMO was previously characterized via thermodynamic modeling coupled with genomic data, illustrating the potential for microbial inhabitants of DeMMO to utilize mineral substrates as energy sources. Here, we employ field and lab based cultivation approaches with pure minerals to link phylogeny to metabolism at DeMMO. Fracture fluids were directed through reactors filled with Fe3O4, Fe2O3, FeS2, MnO2, and FeCO3 at two sites (610 m and 1478 m) for 2 months prior to harvesting for subsequent analyses. We examined mineralogical, geochemical, and microbiological composition of the reactors via DNA sequencing, microscopy, lipid biomarker characterization, and bulk C and N isotope ratios to determine the influence of mineralogy on biofilm community development. Pre-characterized mineral chips were imaged via SEM to assay microbial growth; preliminary results suggest MnO2, Fe3O4, and Fe2O3 were most conducive to colonization. Solid materials from reactors were used as inoculum for batch cultivation experiments. Media designed to mimic fracture fluid chemistry was supplemented with mineral substrates targeting metal reducers. DNA sequences and microscopy of iron oxide-rich biofilms and fracture fluids suggest iron oxidation is a major energy source at redox transition zones where anaerobic fluids meet more oxidizing conditions. We utilized these biofilms and fluids as inoculum in gradient cultivation experiments targeting microaerophilic iron oxidizers. Cultivation of microbes endemic to DeMMO, a system

Microorganism immobilization

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Compere, Alicia L.; Griffith, William L.

1981-01-01

Live metabolically active microorganisms are immobilized on a solid support by contacting particles of aggregate material with a water dispersible polyelectrolyte such as gelatin, crosslinking the polyelectrolyte by reacting it with a crosslinking agent such as glutaraldehyde to provide a crosslinked coating on the particles of aggregate material, contacting the coated particles with live microorganisms and incubating the microorganisms in contact with the crosslinked coating to provide a coating of metabolically active microorganisms. The immobilized microorganisms have continued growth and reproduction functions.

Halophilic microorganisms in deteriorated historic buildings: insights into their characteristics.

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Adamiak, Justyna; Otlewska, Anna; Gutarowska, Beata; Pietrzak, Anna

2016-01-01

Historic buildings are constantly being exposed to numerous climatic changes such as damp and rainwater. Water migration into and out of the material's pores can lead to salt precipitation and the so-called efflorescence. The structure of the material may be seriously threatened by salt crystallization. A huge pressure is produced when salt hydrates occupy larger spaces, which leads at the end to cracking, detachment and material loss. Halophilic microorganisms have the ability to adapt to high salinity because of the mechanisms of inorganic salt (KCl or NaCl) accumulation in their cells at concentrations isotonic to the environment, or compatible solutes uptake or synthesis. In this study, we focused our attention on the determination of optimal growth conditions of halophilic microorganisms isolated from historical buildings in terms of salinity, pH and temperature ranges, as well as biochemical properties and antagonistic abilities. Halophilic microorganisms studied in this paper could be categorized as a halotolerant group, as they grow in the absence of NaCl, as well as tolerate higher salt concentrations (Staphylococcus succinus, Virgibacillus halodenitrificans). Halophilic microorganisms have been also observed (Halobacillus styriensis, H. hunanensis, H. naozhouensis, H. litoralis, Marinococcus halophilus and yeast Sterigmatomyces halophilus). With respect to their physiological characteristics, cultivation at a temperature of 25-30°C, pH 6-7, NaCl concentration for halotolerant and halophilic microorganisms, 0-10% and 15-30%, respectively, provides the most convenient conditions. Halophiles described in this study displayed lipolytic, glycolytic and proteolytic activities. Staphylococcus succinus and Marinococcus halophilus showed strong antagonistic potential towards bacteria from the Bacillus genus, while Halobacillus litoralis displayed an inhibiting ability against other halophiles.

Application of molecular techniques for the assessment of microorganism diversity on cultural heritage objects.

Science.gov (United States)

Otlewska, Anna; Adamiak, Justyna; Gutarowska, Beata

2014-01-01

As a result of their unpredictable ability to adapt to varying environmental conditions, microorganisms inhabit different types of biological niches on Earth. Owing to the key role of microorganisms in many biogeochemical processes, trends in modern microbiology emphasize the need to know and understand the structure and function of complex microbial communities. This is particularly important if the strategy relates to microbial communities that cause biodeterioration of materials that constitute our cultural heritage. Until recently, the detection and identification of microorganisms inhabiting objects of cultural value was based only on cultivation-dependent methods. In spite of many advantages, these methods provide limited information because they identify only viable organisms capable of growth under standard laboratory conditions. However, in order to carry out proper conservation and renovation, it is necessary to know the complete composition of microbial communities and their activity. This paper presents and characterizes modern techniques such as genetic fingerprinting and clone library construction for the assessment of microbial diversity based on molecular biology. Molecular methods represent a favourable alternative to culture-dependent methods and make it possible to assess the biodiversity of microorganisms inhabiting technical materials and cultural heritage objects.

Wanted: Information on the Distribution of Cultivated Plants

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Howard, Richard A.

1970-01-01

Lack of documentation makes it very difficult to discover where species of cultivated plants may be found in the United States. Plead for compilation of "campus floras and herbarium collections. Need for a rational locator file of available plant materials. Lists and reviews present sources of information. Bibliography of campus floras. (EB)

Influence of autochthonous micro-organisms on sorption and remobilization of technetium and selenium. Final report

International Nuclear Information System (INIS)

Maue, G.; Stroetmann, I.; Dott, W.; Taute, T.; Winkler, A.; Pekdeger, A.

1996-01-01

Within this research project the influence of autochthonous mirco-organisms on immobilization and remobilization of Technetium and Selenium was investigated. Both redoxsensitive radionuclides are part of the waste of nuclear fuel (Tc app. 6%). Former investigations have shown, that immobilization behaviour of both elements could be influenced by micro-organisms. It has not been known, if the autochthonous (or in situ) organisms from greater depth do also have an influence on radionuclide mobility. The autochthonous populations of micro-organisms in deep sediments and their influence on the migration of Tc and Se were investigated in this study. For this reason recirculation column experiments were carried out. Absolutely sterile and anaerobic handling was necessary for the sampling and the further treatment of the sediments and waters used in the experiments. Therefore special methods for sampling, storage and handling had been developed. The results of recirculation column test with autochthonous micro-organisms were compared with sterile parallel tests and were verified with the results of an elaborated version of the hydrogeochemical equilibration code PHREEQE. It was shown that the autochthonous micro-organisms had only very little influence on the migration behaviour. The reason is the very low population (less than 10 E+6 CFU). Nevertheless it has to be taken into consideration, that conventional laboratory experiments for the estimation of the retention capacities of sediments for hazardous waste lead to an overestimation, if the sediments are contaminated with allochthonous micro-organisms (CFU=colony forming units). (orig.) [de

Empirical or rational truffle cultivation? It is time to choose.

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Gerard Chevalier

2014-08-01

Full Text Available Aim of study: The aim of this study was to finalize a new method of truffle cultivation in order to obtain an earlier, more regular and  sizeable production of high quality fruiting bodies. Area of study: The experimentation was carried out in France (country of Dordogne, south-western  France  and Italy (country of  Marches,   eastern central Italy for more than one  decade.Material and methods: For the first time the method is based on scientific data on truffle biology particularly: the dynamic system of mycorrhization by the truffle and by other fungi;  the saprophytic capability of the truffle; the ability of its mycelium for decomposing certain minerals and organic materials in the “brûlés”.The basic principle concern the work of the soil and the upkeep of the root system: to work the soil  immediately after the plantation of mycorrhizal seedlings, deeply enough, with adapted tools,  in order to do not compact the soil,  aerate it,  favour the production of deep fruiting bodies not exposed to high temperatures, dryness, frost, parasites… ;  cut accurately  the roots in order to regenerate them and consequently to provide food for the truffle mycelium.Main results: The result has been a new cultivation method designated “differentiated” and called “MRT”, with adapted work of the soil on the lines of plantation and upkeep of the grass between them,  to maintain the cohabitation between areas where the mycelium is present, from those where it is absent.Research highlights: Research is going on to improve   the techniques and particularly finalize tools more precise and more adapted for working the soil and maintaining  the root system in a  best way.  Keywords: truffle; production; nutrition; soil, root system; cultivation tools. 

Effects of a vinasse-microorganism blend application on a Vertisol with sugarcane

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Gallego Blanco Jose Miller

2012-04-01

Full Text Available

The effect of a second dose of vinasse on some physical and chemical properties of a Vertisol was evaluated with cut sugarcane in Valle del Cauca, Colombia. We analyzed the expression of any possible toxicity in foliar tissue samples at the end of the cycle. Vinasse treatments added with two different mixtures of microorganisms were established in a randomized complete block with five replicates: soil without vinasse and no microorganisms; soils with a dose of vinasse, soils with two doses of vinasse; soils with a single dose of vinasse separately evaluated with two different mixtures of microorganisms and soils with two doses of vinasse separately evaluated with two different mixtures of microorganisms. The chemical properties evaluated were pH, soil organic matter content, C, N, P, Ca, Mg, Na, and K content, cation exchange capacity CEC and electrical conductivity EC. The physical properties determined were bulk density, particle density and porosity. There were no significant differences in the physical and chemical properties of the soil for the evaluated cultivation cycle with the application of one or two doses of vinasse with and without microorganisms. Leaf tissue analysis did not show a nutritional imbalance due to the second application.

Marine microorganisms as a promising and sustainable source of bioactive molecules.

Science.gov (United States)

Romano, G; Costantini, M; Sansone, C; Lauritano, C; Ruocco, N; Ianora, A

2017-07-01

There is an urgent need to discover new drug entities due to the increased incidence of severe diseases as cancer and neurodegenerative pathologies, and reducing efficacy of existing antibiotics. Recently, there is a renewed interest in exploring the marine habitat for new pharmaceuticals also thanks to the advancement in cultivation technologies and in molecular biology techniques. Microorganisms represent a still poorly explored resource for drug discovery. The possibility of obtaining a continuous source of bioactives from marine microorganisms, more amenable to culturing compared to macro-organisms, may be able to meet the challenging demands of pharmaceutical industries. This would enable a more environmentally-friendly approach to drug discovery and overcome the over-utilization of marine resources and the use of destructive collection practices. The importance of the topic is underlined by the number of EU projects funded aimed at improving the exploitation of marine organisms for drug discovery. Copyright © 2016 Elsevier Ltd. All rights reserved.

Feasibility Study on Sterilization of Badge using Radiation and Cultivation by Nano-bubble Water for Matsutake Mushroom Cultivation

International Nuclear Information System (INIS)

Jung, Inha

2013-12-01

This report on the 'Sterilization of Badge using Radiation and Cultivation by Nano-bubble Water for Matsutake Mushroom Cultivation' is belonged to the final report on the preliminary study of the first subject in 2013 for civilian project. This was complimented on the responsible of the Korea Atomic Energy Research Institute for 1 st of June 2013 to 30 th of November 2013. We are going to make sterilization the badge using the gamma ray and supplying the oxygen by nano-bubble oxygen rich water for cultivating the Matsutake Mushroom, instead of the conventional process of sterilization of the badge by hot steam over 120 .deg. C consuming over 8 hours and expensive ventilation system for supplying the fresh air for delivering the oxygen

Semicontinuous cultivation of the Cyanobacterium Spirulina platensis in a closed photobioreactor

Energy Technology Data Exchange (ETDEWEB)

Reichert, C.C.; Costa, J.A.V. [Fundacao Universidade Federal do Rio Grande (FURG), Rio Grande, RS (Brazil). Dept. de Quimica], Email: dqmjorge@furg.br; Reinehr, C.O. [Universidade de Passo Fundo, RS (Brazil). Centro de Pesquisa em Alimentacao], Email: reinehr@upf.br

2006-01-15

The cultivation of photosynthetic microorganisms such as the cyanobacterium Spirulina platensis has been studied by researchers in many countries because these organisms can produce products with industrial potential. We studied the specific growth rate ({mu}{sub x}, day{sup -1}) and productivity (P{sub x}, in mg/L/day of Spirulina platensis biomass, dry weight basis) of two S. platensis strains (LEB-52 and Paracas) growing in aerated semicontinuous culture in two-liter Erlenmeyer flasks for 90 days (2160 h) at 30 deg C under 2500 lux of illumination in a 12 h photoperiod. Independent of the S. platensis strain used we found that low biomass concentrations (0.50 g/L) and high renewal rates (50% v/v) resulted in a high specific growth rate ({mu}{sub x} = 0.111 day{sup -1}) and high productivity (P{sub x} = 42.3 mg/L/day). These values are two to four times higher than those obtained in simple batch cultivation and indicate that the semicontinuous cultivation of S. platensis is viable. (author)

Potential applications of plant probiotic microorganisms in agriculture and forestry

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Luciana Porto de Souza Vandenberghe

2017-07-01

Full Text Available Agriculture producers, pushed by the need for high productivity, have stimulated the intensive use of pesticides and fertilizers. Unfortunately, negative effects on water, soil, and human and animal health have appeared as a consequence of this indiscriminate practice. Plant probiotic microorganisms (PPM, also known as bioprotectants, biocontrollers, biofertilizers, or biostimulants, are beneficial microorganisms that offer a promising alternative and reduce health and environmental problems. These microorganisms are involved in either a symbiotic or free-living association with plants and act in different ways, sometimes with specific functions, to achieve satisfactory plant development. This review deals with PPM presentation and their description and function in different applications. PPM includes the plant growth promoters (PGP group, which contain bacteria and fungi that stimulate plant growth through different mechanisms. Soil microflora mediate many biogeochemical processes. The use of plant probiotics as an alternative soil fertilization source has been the focus of several studies; their use in agriculture improves nutrient supply and conserves field management and causes no adverse effects. The species related to organic matter and pollutant biodegradation in soil and abiotic stress tolerance are then presented. As an important way to understand not only the ecological role of PPM and their interaction with plants but also the biotechnological application of these cultures to crop management, two main approaches are elucidated: the culture-dependent approach where the microorganisms contained in the plant material are isolated by culturing and are identified by a combination of phenotypic and molecular methods; and the culture-independent approach where microorganisms are detected without cultivating them, based on extraction and analyses of DNA. These methods combine to give a thorough knowledge of the microbiology of the studied

[DIFFERENTIAL SENSITIVITY OF MICROORGANISMS TO POLYHEXAMETHYLENEGUANIDINE].

Science.gov (United States)

Lysytsya, A V; Mandygra, Y M; Bojko, O P; Romanishyna, O O; Mandygra, M S

2015-01-01

Factors identified that affect the sensitivity of microorganisms to polyhexamethyleneguanidine (PHMG). Salts of PHMG chloride, valerate, maleate, succinate was to use. Test strains of Esherichia coli, Staphylococcus aureus, Bacillus cereus, Leptospira interrogans, Paenibacillus larvae, Mycobacterium bovis, M. avium, M. fortuitum, Aspergillus niger and some strains of viruses are taken as objects of research. We have determined that the cytoplasm membrane phospholipids is main "target" for the polycation molecules of PHMG. A differential sensitivity of the microorganisms to this drug is primarily determined by relative amount of lipids in membrane and their accessibility. Such trends exist: increase the relative contents of anionic lipids and more negative surface electric potential of membrane, and reduction of the sizes fat acid remainder of lipids bring to increase of microorganism sensitivity. Types of anion salt PHMG just have a certain value. Biocide activity of PHMG chloride is more, than its salts with organic acid. Feasibility of combining PHMG with other biocides in the multicomponent disinfectants studied and analyzed. This combination does not lead to a significant increase in the sensitivity of microorganisms tested in most cases. Most species of pathogenic bacteria can be quickly neutralized by aqueous solutions of PHMG in less than 1% concentrations.

What Makes Difficult History Difficult?

Science.gov (United States)

Gross, Magdalena H.; Terra, Luke

2018-01-01

All modern nation-states have periods of difficult history that teachers fail to address or address inadequately. The authors present a framework for defining difficult histories and understanding what makes them difficult. These events 1) are central to a nation's history, 2) contradict accepted histories or values, 3) connect with present…

Cellular viability of Saccharomyces cerevisiae cultivated in association with contaminates bacteria of alcoholic fermentation

International Nuclear Information System (INIS)

Nobre, Thais de Paula

2005-01-01

The aim of this work was to study the influence of the bacteria Bacillus and Lactobacillus, as well as their metabolic products, in reduction of cellular viability of Saccharomyces cerevisiae, when in mixed culture of yeast and active and treated bacteria. Also was to evaluated an alternative medium (MCC) for the cultivation of bacteria and yeast, constituted of sugarcane juice diluted to 5 deg Brix and supplemented with yeast extract and peptone. The bacteria Bacillus subtilis, Bacillus coagulans, Bacillus stearothermophilus, Lactobacillus fermentum and Lactobacillus plantarum were cultivated in association with yeast Saccharomyces cerevisiae (strain Y-904) for 72 h on 32 deg C, under agitation. The cellular viability, budding rate and population of S. cerevisiae, the total acidity, volatile acidity and pH of culture were determined from 0, 24, 48 e 72 h of mixed culture. Also were determined the initial and final of microorganism population across the pour plate method, in traditional culture medium (PCA for Bacillus, MRS-agar for Lactobacillus and YEPD-agar for yeast S. cerevisiae) and in medium constituted of sugarcane juice. The bacteria cultures were treated by heat sterilization (120 deg C for 20 minutes), antibacterial agent (Kamoran HJ in concentration 3,0 ppm) or irradiation (radiation gamma, with doses of 5,0 kGy for Lactobacillus and 15,0 kGy for Bacillus). The results of the present research showed that just the culture mediums more acids (with higher concentrations of total and volatile acidity, and smaller values of pH), contaminated with active bacteria L. fermentum and B. subtilis, caused reduction on yeast cellular viability. Except the bacteria B. subtilis treated with radiation, the others bacteria treated by different procedures (heat, radiation e antibacterial) did not cause reduction on yeast cellular viability and population, indicating that the isolated presence of the cellular metabolic of theses bacteria was not enough to reduce the

Environment purification using microorganisms. Biseibutsu ni yoru kankyo joka

Energy Technology Data Exchange (ETDEWEB)

Tanaka, H [Asahi Glass Co. Ltd., Tokyo (Japan); Harada, S

1993-12-01

Technologies to purify polluted soils vary with kinds of pollutants, spread of pollution, and shapes of water veins. A method is used often that several wells are drilled in a polluted area, and water is circulated between upstream wells and downstream wells, where activities of microorganisms living in that particular environment are utilized to biodegrade the pollutants. This technology is called bioremediation. This paper deals with soil pollution by chemical substances, and describes development of a technology to remove pollution caused by PCB and petroleum which is thought difficult to apply the bioremediation technology among environment purifying technologies using microorganisms. The bioremediation of petroleum pollution assumes petroleum pollution on seashores. Discussions have been given on separation from sea water of petroleum decomposing microorganisms to be used in the bioremediation, and the number of petroleum decomposing bacteria in seas near Japan. As a result, it was made clear that a few kinds of bacteria will suffice for decomposition of main components in a mixture as complex as petroleum. 5 refs., 4 figs.

Biodegradation of oil palm empty fruit bunch by composite micro-organisms

International Nuclear Information System (INIS)

Yusri Atan; Mat Rasol Awang; Mohammed Omar; Azizah Hashim; Tamikazu Kume; Shoji Hashimoto

1998-01-01

A comparison study on the comparative biodegradation ability on EFB by five groups of composite micro-organisms [Organomine, Thomas, Ohres C, Ohres II and micro-organisms from POME (palm oil mill effluent)] has been performed with the aim of producing a compost at a faster rate than that by natural biodegradation. The experiment was carried out by mixing 50 gram EFB (dry weight basis) with 3% ammonium sulphate to which was added 1% composite micro-organisms and water to produce a composting media of moisture content about 60%. Respiration of composite micro-organisms as well as from decomposition of EFB releasing CO sub 2. The choice of useful micro-organisms was based on its ability to degrade EFB as reflected by higher evolution rate of CO sub 2 released and retaining higher percentage of nitrogen in the final product

Development of Novel Drugs from Marine Surface Associated Microorganisms

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Suhelen Egan

2010-03-01

Full Text Available While the oceans cover more than 70% of the Earth’s surface, marine derived microbial natural products have been largely unexplored. The marine environment is a habitat for many unique microorganisms, which produce biologically active compounds (“bioactives” to adapt to particular environmental conditions. For example, marine surface associated microorganisms have proven to be a rich source for novel bioactives because of the necessity to evolve allelochemicals capable of protecting the producer from the fierce competition that exists between microorganisms on the surfaces of marine eukaryotes. Chemically driven interactions are also important for the establishment of cross-relationships between microbes and their eukaryotic hosts, in which organisms producing antimicrobial compounds (“antimicrobials”, may protect the host surface against over colonisation in return for a nutrient rich environment. As is the case for bioactive discovery in general, progress in the detection and characterization of marine microbial bioactives has been limited by a number of obstacles, such as unsuitable culture conditions, laborious purification processes, and a lack of de-replication. However many of these limitations are now being overcome due to improved microbial cultivation techniques, microbial (meta- genomic analysis and novel sensitive analytical tools for structural elucidation. Here we discuss how these technical advances, together with a better understanding of microbial and chemical ecology, will inevitably translate into an increase in the discovery and development of novel drugs from marine microbial sources in the future.

Feasibility Study on Sterilization of Badge using Radiation and Cultivation by Nano-bubble Water for Matsutake Mushroom Cultivation

Energy Technology Data Exchange (ETDEWEB)

Jung, Inha

2013-12-15

This report on the 'Sterilization of Badge using Radiation and Cultivation by Nano-bubble Water for Matsutake Mushroom Cultivation' is belonged to the final report on the preliminary study of the first subject in 2013 for civilian project. This was complimented on the responsible of the Korea Atomic Energy Research Institute for 1{sup st} of June 2013 to 30{sup th} of November 2013. We are going to make sterilization the badge using the gamma ray and supplying the oxygen by nano-bubble oxygen rich water for cultivating the Matsutake Mushroom, instead of the conventional process of sterilization of the badge by hot steam over 120 .deg. C consuming over 8 hours and expensive ventilation system for supplying the fresh air for delivering the oxygen.

MICROORGANISMS IN SELECTED CONFECTIONARY PRODUCTS DURING THE MANUFACTURING PROCESS

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Jana Petrová

2015-02-01

Full Text Available The aim of our study was to evaluate the microbiological quality confectionery products during production. A total of 135 samples were analyzed: 45 samples of the punch balls, 45 Venček samples and 45 samples French cubes from home, school and private production. For microorganism cultivation VRBL agar for the isolation of coliform bacteria, DRBC and DG18 for microscopic fungi and yeasts, Plate Count Agar for total viable count, Meat peptone agar for mesophilic aerobic bacteria, XLD agar for Salmonella sp. and Baird Parker agar for Staphylococcus aureus were used. Following microbiological parameters were tested: total viable count, mesophilic anaerobic microorganisms, coliform bacteria, yeast and microscopic filamentous fungi, Salmonella spp. and Staphylococcus aureus. Products are assessed according to the limit values of the number of microorganisms contained in the Codex Alimentary of the Slovak Republic. The overall assessment of the microbiological quality of the punch balls, we found that two samples from school factory and one sample from private producer did not meet CA SR for the total viable count. Comparing the microbiological quality of Venček with CA SR, we found that one sample of home production did not meet the requirements for this type of product. All the tested samples were Staphylococcus aureus and Salmonella spp. negative. Comparing the results of the samples with French cubes CA SR, we found that all the samples satisfy requirements.

The global dispersion of microorganisms and pollutants in clouds of desert dust

Science.gov (United States)

Griffin, D. W.; Kellogg, C. A.; Garrison, V. H.; Kubilay, N.; Kocak, M.; Shinn, E.

2003-12-01

A current estimate of the quantity of dust that is transported some distance in Earth's atmosphere each year is approximately two billion metric tons. Whereas various research projects have been undertaken to understand this planetary process, little has been done to address public and ecosystem health issues. Our research group is currently investigating long-range transport of microorganisms associated with desert dust clouds at various points on the globe via the integration of remote sensing, modeling and microbiological assays. Using a suite of molecular biology techniques, we are identifying cultivable bacteria and fungi and enumerating total bacteria and viruses. Research results indicate that approximately 30% of the microorganisms found in Earth's atmosphere during `African dust events' are species of bacteria or fungi that have previously been identified as disease causing agents in terrestrial plants, trees, and animals. This presentation will cover historical research in this field and the implications of microbial and pollutant \\(metals, pesticides, etc.\\) transport to downwind ecosystems.

Classification of root canal microorganisms using electronic-nose and discriminant analysis

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Özbilge Hatice

2010-11-01

Full Text Available Abstract Background Root canal treatment is a debridement process which disrupts and removes entire microorganisms from the root canal system. Identification of microorganisms may help clinicians decide on treatment alternatives such as using different irrigants, intracanal medicaments and antibiotics. However, the difficulty in cultivation and the complexity in isolation of predominant anaerobic microorganisms make clinicians resort to empirical medical treatments. For this reason, identification of microorganisms is not a routinely used procedure in root canal treatment. In this study, we aimed at classifying 7 different standard microorganism strains which are frequently seen in root canal infections, using odor data collected using an electronic nose instrument. Method Our microorganism odor data set consisted of 5 repeated samples from 7 different classes at 4 concentration levels. For each concentration, 35 samples were classified using 3 different discriminant analysis methods. In order to determine an optimal setting for using electronic-nose in such an application, we have tried 3 different approaches in evaluating sensor responses. Moreover, we have used 3 different sensor baseline values in normalizing sensor responses. Since the number of sensors is relatively large compared to sample size, we have also investigated the influence of two different dimension reduction methods on classification performance. Results We have found that quadratic type dicriminant analysis outperforms other varieties of this method. We have also observed that classification performance decreases as the concentration decreases. Among different baseline values used for pre-processing the sensor responses, the model where the minimum values of sensor readings in the sample were accepted as the baseline yields better classification performance. Corresponding to this optimal choice of baseline value, we have noted that among different sensor response model and

Microalgal cultivation with biogas slurry for biofuel production.

Science.gov (United States)

Zhu, Liandong; Yan, Cheng; Li, Zhaohua

2016-11-01

Microalgal growth requires a substantial amount of chemical fertilizers. An alternative to the utilization of fertilizer is to apply biogas slurry produced through anaerobic digestion to cultivate microalgae for the production of biofuels. Plenty of studies have suggested that anaerobic digestate containing high nutrient contents is a potentially feasible nutrient source to culture microalgae. However, current literature indicates a lack of review available regarding microalgal cultivation with biogas slurry for the production of biofuels. To help fill this gap, this review highlights the integration of digestate nutrient management with microalgal production. It first unveils the current status of microalgal production, providing basic background to the topic. Subsequently, microalgal cultivation technologies using biogas slurry are discussed in detail. A scale-up scheme for simultaneous biogas upgrade and digestate application through microalgal cultivation is then proposed. Afterwards, several uncertainties that might affect this practice are explored. Finally, concluding remarks are put forward. Copyright © 2016 Elsevier Ltd. All rights reserved.

Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4-450 m in Olkiluoto, Finland.

Science.gov (United States)

Pedersen, Karsten; Arlinger, Johanna; Eriksson, Sara; Hallbeck, Anna; Hallbeck, Lotta; Johansson, Jessica

2008-07-01

Microbiology, chemistry and dissolved gas in groundwater from Olkiluoto, Finland, were analysed over 3 years; samples came from 16 shallow observation tubes and boreholes from depths of 3.9-16.2 m and 14 deep boreholes from depths of 35-742 m. The average total number of cells (TNC) was 3.9 x 10(5) cells per ml in the shallow groundwater and 5.7 x 10(4) cells per ml in the deep groundwater. There was a significant correlation between the amount of biomass, analysed as ATP concentration, and TNC. ATP concentration also correlated with the stacked output of anaerobic most probable number cultivations of nitrate-, iron-, manganese- and sulphate-reducing bacteria, and acetogenic bacteria and methanogens. The numbers and biomass varied at most by approximately three orders of magnitude between boreholes, and TNC and ATP were positively related to the concentration of dissolved organic carbon. Two depth zones were found where the numbers, biomass and diversity of the microbial populations peaked. Shallow groundwater down to a depth of 16.2 m on average contained more biomass and cultivable microorganisms than did deep groundwater, except in a zone at a depth of approximately 300 m where the average biomass and number of cultivable microorganisms approached those of shallow groundwater. Starting at a depth of approximately 300 m, there were steep gradients of decreasing sulphate and increasing methane concentrations with depth; together with the peaks in biomass and sulphide concentration at this depth, these suggest that anaerobic methane oxidation may be a significant process at depth in Olkiluoto.

Application of genetically engineered microorganisms to bioremediation and wastewater treatment. Idenshi sosa biseibutsu no kankyo joka mizushori eno tekiyo

Energy Technology Data Exchange (ETDEWEB)

Fujita, M; Ike, M [Osaka University, Osaka (Japan). Faculty of Engineering

1993-11-10

This paper summarizes the following techniques: a gene engineering method for bioremediation and wastewater treatment, microorganism breeding using the former method, and a monitoring technique for genetical and ecological stability of genetically engineered microorganisms. Recombination bacteria reinforced with PH genes showed higher phenol removing rate than wild strains, but presented accumulation of catechol in such a large quantity as cannot be seen in wild strains, with the complete degradation rate rather decreased. Gene recombined bacteria structured by introducing the recombined plasmid, pBH500, had high genetic stability when P.putida BH-1 is used as a host. E.coli C600 having recombined plasmid and P.putida BH were added and cultivated in activated sludge. As a result, both recombined bacteria showed rapid logarithmic decrease just after the addition, then, maintained the relatively stable population groups, and remained in the activated sludge for an extended period of time. In monitoring techniques, the colony hybridization process detected clearly the gene recombined bacteria. 9 refs., 7 figs., 1 tab.

Micro-Organ Device

Science.gov (United States)

Gonda, Steve R. (Inventor); Chang, Robert C. (Inventor); Starly, Binil (Inventor); Culbertson, Christopher (Inventor); Holtorf, Heidi L. (Inventor); Sun, Wei (Inventor); Leslie, Julia (Inventor)

2013-01-01

A method for fabricating a micro-organ device comprises providing a microscale support having one or more microfluidic channels and one or more micro-chambers for housing a micro-organ and printing a micro-organ on the microscale support using a cell suspension in a syringe controlled by a computer-aided tissue engineering system, wherein the cell suspension comprises cells suspended in a solution containing a material that functions as a three-dimensional scaffold. The printing is performed with the computer-aided tissue engineering system according to a particular pattern. The micro-organ device comprises at least one micro-chamber each housing a micro-organ; and at least one microfluidic channel connected to the micro-chamber, wherein the micro-organ comprises cells arranged in a configuration that includes microscale spacing between portions of the cells to facilitate diffusion exchange between the cells and a medium supplied from the at least one microfluidic channel.

Sharing and Cultivating Tacit Knowledge in an Online Learning Environment

Science.gov (United States)

Tee, Meng Yew; Karney, Dennis

2010-01-01

Research on knowledge cultivation often focuses on explicit forms of knowledge. However, knowledge can also take a tacit form--a form that is often difficult or impossible to tease out, even when it is considered critical in an educational context. A review of the literature revealed that few studies have examined tacit knowledge issues in online…

ADAPTIVE ENERGY-SAVING CULTIVATOR FOR STONY SOILS CULTIVATING

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A. B. Kudzaev

2015-01-01

Full Text Available Practice of cultivators operation on stony soils in RNO-Alania with high hardness and humidity indicates that traction resistance during the work varies widely, with deviation from the mean value by more than 2 times. Optimally adjust the machine to the soil background when using most modern mechanisms of regulation is not always possible. Customizing the data machine boils down to the choice of priority between the vibration of the working bodies in the soil, the maintenance of the given depth and power reserve stands required to crawl the working body of the big stones. It is very difficult to get in practice the best combination of these three factors, especially on stony soils. Therefore, the machine must be designed with the ability to quickly adjust to changing operating conditions and modes to ensure energy-saving effects and not violations of the specified soil depth of various hardness with the possibility of equipping the machine racks with different working bodies. The interrow cultivator with the possibility of the quick adjustment (including automated to varying conditions was developed. In the process of studied basic parameters of elastic composite racks and parameters of pneumatic mechanism drive to adjust the proposed section of the machine were established. The system hardiness in layouts by elastic bars with air pressure up to 0.6 MPa varies from 17.7 to 45.3 N/mm. It was received effective values of pressures 0.4-0.5 MPa in the pneumatic drive partitions of the machine when operating with universal blade and ridger body OK-3 on stony soil. As a result, traction resistance decreases by 30-35 percent.

Effects of the Atrazine herbicide over the diazotrophic microorganisms associated with corn in a Saldana soil (Tolima)

International Nuclear Information System (INIS)

Ordonez, Alba R; Lozano de Yunda, A; Fuentes, C

1999-01-01

In this study, it was evaluated, at greenhouse in soil pots, the effect of the herbicide atrazine in different dose (corresponding to o, 0.75, 1.5 and 3.0 kg of soil hectare) over time (15, 30, 45, 60 and 90 days after the application) on the diazotrophic micro-organisms associated with rhizosphere soil and root of a corn cultivation in a clay loam soil of Saldana - Tolima. It was determined the population of diazotrophic microorganisms in soil by the most probable number technique; also it was observed the characteristic growth in the specific cultivation semisolid Nfb-malic acid medium and was evaluated the nitrogenase activity by means of the acetylene reduction technique. Of the same form, it was observed the characteristic growth and it was evaluated the nitrogenase activity of direct fragment sowings of root in the Nfb-malic acid medium. The 60.8% of soil isolates presented characteristic cultural growth in the form of whitish pellicle under the surface of the medium. in the root 83.3% showed this type of growth. The population of diazotrophic microorganisms of soil did not present significant differences (α = 0.05) between treatments neither over time the nitrogenase activity of soil dilutions demonstrated that there is no a significant effect (α = 0.05) of the treatments (dose) but if there is significant effect of the time. The highest values were presented to 45 days of application of the herbicide, with the application of the highest dose. the nitrogenase activity in the root to what is long of the time was different from rhizosphere soil. The treatment without application of atrazine presented greater values to what is long of the time, however, also in this case were not presented significant differences (α = 0.05) between the treatments (dose) neither to what is long of the time. For so much, as a conclusion, they were not presented effects on the population and the nitrogenase activity of the diazotrophic microorganisms until 90 days of after the

Bioremediation of herbicide velpar K® in vitro in aqueous solution with application of EM-4 (effective microorganisms

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Márcio Antônio Gomes Ramos

2012-02-01

Full Text Available This work assessed the bioremediation of herbicide Velpar K®, in vitro in aqueous solution, used against weeds in sugar cane in São Paulo state. The herbicide contained Hexazinone and Diuron. It was used the microbial inoculant denominated Effective Microorganisms (EM-4, pool of microorganisms from soil that contained lactic and photosynthetic bacteria, fungi, yeasts and actinomycetes for bioremediation. Results for the depth of cultivation on agar-agar inoculated with EM-4 showed the microorganisms growth in the concentrations between 0.2% and 1.0% of the Velpar K®in the gel. The analysis of high performance liquid chromatography (HPLC showed that the EM-4 was effective for the bioremediation of the herbicide, which reached the values of 80% for diuron and 70% for hexazinone after 21 days in solution of 2:1 of Velpar K®/EM-4 ratio. These results could be useful for planning the bioremediation of contaminated areas with Velpar K®.

Biodeterioration Risk Threatens the 3100 Year Old Staircase of Hallstatt (Austria): Possible Involvement of Halophilic Microorganisms.

Science.gov (United States)

Piñar, Guadalupe; Dalnodar, Dennis; Voitl, Christian; Reschreiter, Hans; Sterflinger, Katja

2016-01-01

The prosperity of Hallstatt (Salzkammergut region, Austria) is based on the richness of salt in the surrounding mountains and salt mining, which is documented as far back as 1500 years B.C. Substantial archaeological evidence of Bronze and Iron Age salt mining has been discovered, with a wooden staircase (1108 B.C.) being one of the most impressive and well preserved finds. However, after its discovery, fungal mycelia have been observed on the surface of the staircase, most probably due to airborne contamination after its find. As a basis for the further preservation of this valuable object, the active micro-flora was examined to investigate the presence of potentially biodegradative microorganisms. Most of the strains isolated from the staircase showed to be halotolerant and halophilic microorganisms, due to the saline environment of the mine. Results derived from culture-dependent assays revealed a high fungal diversity, including both halotolerant and halophilic fungi, the most dominant strains being members of the genus Phialosimplex (synonym: Aspergillus). Additionally, some typical cellulose degraders, namely Stachybotrys sp. and Cladosporium sp. were detected. Numerous bacterial strains were isolated and identified as members of 12 different genera, most of them being moderately halophilic species. The most dominant isolates affiliated with species of the genera Halovibrio and Marinococcus. Halophilic archaea were also isolated and identified as species of the genera Halococcus and Halorubrum. Molecular analyses complemented the cultivation assays, enabling the identification of some uncultivable archaea of the genera Halolamina, Haloplanus and Halobacterium. Results derived from fungi and bacteria supported those obtained by cultivation methods, exhibiting the same dominant members in the communities. The results clearly showed the presence of some cellulose degraders that may become active if the requirements for growth and the environmental conditions

Biodeterioration Risk Threatens the 3100 Year Old Staircase of Hallstatt (Austria: Possible Involvement of Halophilic Microorganisms.

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Guadalupe Piñar

Full Text Available The prosperity of Hallstatt (Salzkammergut region, Austria is based on the richness of salt in the surrounding mountains and salt mining, which is documented as far back as 1500 years B.C. Substantial archaeological evidence of Bronze and Iron Age salt mining has been discovered, with a wooden staircase (1108 B.C. being one of the most impressive and well preserved finds. However, after its discovery, fungal mycelia have been observed on the surface of the staircase, most probably due to airborne contamination after its find.As a basis for the further preservation of this valuable object, the active micro-flora was examined to investigate the presence of potentially biodegradative microorganisms.Most of the strains isolated from the staircase showed to be halotolerant and halophilic microorganisms, due to the saline environment of the mine. Results derived from culture-dependent assays revealed a high fungal diversity, including both halotolerant and halophilic fungi, the most dominant strains being members of the genus Phialosimplex (synonym: Aspergillus. Additionally, some typical cellulose degraders, namely Stachybotrys sp. and Cladosporium sp. were detected. Numerous bacterial strains were isolated and identified as members of 12 different genera, most of them being moderately halophilic species. The most dominant isolates affiliated with species of the genera Halovibrio and Marinococcus. Halophilic archaea were also isolated and identified as species of the genera Halococcus and Halorubrum. Molecular analyses complemented the cultivation assays, enabling the identification of some uncultivable archaea of the genera Halolamina, Haloplanus and Halobacterium. Results derived from fungi and bacteria supported those obtained by cultivation methods, exhibiting the same dominant members in the communities.The results clearly showed the presence of some cellulose degraders that may become active if the requirements for growth and the environmental

Evaluation of dispersion methods for enumeration of microorganisms from peat and activated carbon biofilters treating volatile organic compounds.

Science.gov (United States)

Khammar, Nadia; Malhautier, Luc; Degrange, Valérie; Lensi, Robert; Fanlo, Jean-Louis

2004-01-01

To enumerate microorganisms having colonized biofilters treating volatile organic compounds, it is necessary firstly to evaluate dispersion methods. Crushing, shaking and sonication were then tested for the removal of microflora from biofilters packing materials (peat and activated carbon). Continuous or discontinuous procedures, and addition of glass beads had no effect on the number of microorganisms removed from peat particles. The duration of treatment also had no effect for shaking and crushing, but the number of microorganisms after 60 min of treatment with ultrasound was significantly higher than that obtained after 0.5 min. The comparison between these methods showed that crushing was the most efficient for the removal of microorganisms from both peat and activated carbon. The comparison between three chemical dispersion agents showed that 1% Na-pyrophosphate was less efficient, compared with 200 mM phosphate buffer or 1% Na-hexametaphosphate. To optimize the cultivation of microorganisms, three different agar media were compared. Tryptic soy agar tenfold diluted (TSA 1/10) was the most suitable medium for the culture of microflora from a peat biofilter. For the activated carbon biofilter, there was no significant difference between Luria Bertoni, TSA 1/10, and plate count agar. The optimized extraction and enumeration protocols were used to perform a quantitative characterization of microbial populations in an operating laboratory activated carbon biofilter and in two parallel peat biofilters.

Selection of potential microorganism for sago starch fermentation

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RUTH MELLIAWATI

2006-02-01

Full Text Available Fermentation process of sago starch for the production of bioproduct requires potential microorganism that have ability to hydrolyze sago starch. The purpose of this research was to get the potential of amylolytic microorganisms for their capability of amyloglucosidase activity and to know the sugar strains of the fermentation result. Eleven amylolytic microorganisms (9 strains of mold and 2 strains of yeast were obtained from the collection Research Centre for Biotechnology – Indonesian Institute of Sciences (LIPI, Cibinong-Bogor were used. The selection step was carried out based on their capability of starch hydrolysis to reducing sugar. The best result indicates that the production of reducing sugar reached the highest 18.485 ppm and amyloglucosidase activities was 3.583 units by KTU-1 strain. The highest total acid obtained was 5.85 mg/mL by Rhizopus IFO.R5442. The cell biomass was obtained between 0.5 to 1.74 g dry weight/100 mL and pH of the final fermentation (72 h were 3.57 to 8.38.

Characterization of microorganisms in the acidic mine water of the former uranium mine Koenigstein; Charakterisierung der Mikroorganismen im sauren Grubenwasser des ehemaligen Uranbergwerks Koenigstein

Energy Technology Data Exchange (ETDEWEB)

Zirnstein, Isabel

2015-06-29

The thesis on the characterization of microorganisms in the acidic mine water of the former uranium mine Koenigstein covers the following issues: Introduction: (1) Environmental rehabilitation of the uranium mine by the Wismut GmbH, microorganisms in the acidic mine waters, influence of microorganisms on the mobility of metals and radionuclides, biofilms and their influence on the mobility of metals and radionuclides, biodiversity of the mine Koenigstein before flooding; (2) Scope of the work. (3) Materials and methods: Site characterization, biofilm systems, sampling of water and biofilms, sample transport and storage, chemical analysis, speciation diagrams, catalyzed reporter deposition fluorescence in-situ hybridization, quantitative microbiological methods, classical microbiological cultivation methods, molecular biological methods, bioinformatics - sequence analysis, statistics, optical microscopy, biofilms. (4) Results and discussion: chemo-physical parameters before and after flooding, quantification of microorganisms, characterization of prokaryotes, characterization of eukaryotes, biofilms.

Phytoremediation of radiocesium in different soils using cultivated plants

International Nuclear Information System (INIS)

Suzuki, Yasukazu; Saito, Takashi; Tsukada, Hirofumi

2012-01-01

A huge amount of radionuclides were released into the environment after the Fukushima Daiichi nuclear power plant accident. Radiocesium, which is one of the more prevalent radionuclides, was deposited in the soil. It is well known that radiocesium is adsorbed into the soil and binds strongly to clay. As a result, it is difficult to reduce the contamination level in the soil. We examine the possibility of decontamination by means of phytoremediation. Four species of plants (sunflower, sorghum, amaranth, and buckwheat) were sown in light-colored Andosol and gray lowland soil. When the plants matured, they were harvested and separated into their different parts, i.e., flower, leaf, stem, and root. The removal percentage of 137 Cs for the aboveground parts, which is defined as the ratio of the total content of 137 Cs in the aboveground biomass of plants to that in the cultivated soil of 0-15 cm depth, was 0.013-0.93% for the light-colored Andosol and 0.0072-0.038% for the gray lowland soil. The plants exhibiting the highest value cultivated in the light-colored Andosol and gray lowland soil were amaranth (0.093%) and sunflower (0.038%), respectively. This indicates that it is difficult to remove radiocesium from contaminated soil by means of phytoremediation. (author)

Influence of autochthonous micro-organisms on sorption and remobilization of technetium and selenium in different aquifer materials. Final report

International Nuclear Information System (INIS)

Rueden, H.; Maue, G.; Stroetmann, I.; Hornemann, C.; Seichter, M.; Pekdeger, A.; Taute, T.; Winkler, A.; Lange, D.; Majerczyk, D.; Meyer, T.

1998-01-01

In this research project the influence of autochthonous micro-organisms on immobilisation and remobilization of Technetium and Selenium was investigated. Both radionuclides are part of the nuclear fuel waste (Tc app. 6%). Former investigations have shown, that immobilisation behaviour of both elements can be influenced by micro-organisms. The autochthonous population of micro-organisms in deep sediments and their influence on immobilisation of Tc and Se was investigated in this study. For this reason recirculation column tests were carried out. Absolutely sterile and anaerobic handling is necessary handling the sediments and waters used for the experiments. Special methods for sampling, storage and handling were developed. More than 30 sediments have been investigated. The number of colony forming units (CFU) has always been relatively low (less than E+06 CFU). The results of recirculation column tests with autochthonous micro-organisms were compared with sterilized (Co-60) parallel tests and were verified with the results of hydrochemical equilibration code PHREEQUE. Instead of the allochthonous micro-orgamisms the autochthonous organisms showed no significant fixation of the radionuclides due to microbial activity. This is true for various temperatures of 10 C (aquifer temperature) and 20 C (normal laboratory temperature). An addition of an inoculum of the autochthonous micro-organisms developed at breeding temperature of 10 and 20 C had no influence on the radionuclide mobility. Performing conventional laboratory experiments you have to consider an overestimated retardation capacity because of an inevitable contamination with allochthonous micro-organisms. (orig.) [de

Heterotrophic cultivation of Chlorella pyrenoidosa using sucrose as the sole carbon source by co-culture with Rhodotorula glutinis.

Science.gov (United States)

Wang, Shikai; Wu, Yong; Wang, Xu

2016-11-01

Heterotrophic cultivation of microalgae is a feasible alternative strategy to avoid the light limitation of photoautotrophic culture, but the heterotrophic utilization of disaccharides is difficult for microalgae. Aimed at this problem, a co-culture system was developed by mix culture of C. pyrenoidosa and R. glutinis using sucrose as the sole carbon source. In this system, C. pyrenoidosa could utilize glucose and fructose which were hydrolyzed from sucrose by R. glutinis. The highest specific growth rate and final cell number proportion of algae was 1.02day(-1) and 45%, respectively, when cultured at the initial algal cell number proportion of 95.24% and the final algal cell density was 111.48×10(6)cells/mL. In addition, the lipid content was also promoted due to the synergistic effects in mix culture. This study provides a novel approach using sucrose-riched wastes for the heterotrophic culture of microalgae and may effectively decrease the cost of carbon source. Copyright © 2016 Elsevier Ltd. All rights reserved.

Selection of micro-organisms and fermentation conditions of oil palm empty fruit bunch (EFB) and palm press fibre (PPF)

International Nuclear Information System (INIS)

Mat Rasol Awang; Hassan Hamdani Mutaat; Tamikazu Kume; Hitoshi Ito

1998-01-01

The selection of useful microorganisms was made by trial cultivation of various cellulolytic fungi on EFB and PPF. Several fermentation conditions were performed involving adjusting alkali treatment conditions, pH, changing media composition and preparation technique of solid culture media. Basic the preparation of the solid culture media was made by dissolving inorganic salts together with micro-nutrients and then added to the alkali treated EFB and PPF. In the cultivation of mushrooms, the preparation of solid culture media was adopted from mushroom growers technique. The criteria of a good degradation ability of fungi were evaluated based on the percentage of crude fibre degradation of EFB and PPF by fungi. The nutritional values of the products such as protein was also characterised

Improving Former Shifted Cultivation Land Using Wetland Cultivation in Kapuas District, Central Kalimantan

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Wahyudi Wahyudi

2016-06-01

Full Text Available Degraded forest area in Kalimantan could be caused by shifted cultivation activity that be conducted by local peoples in the surrounding forest areas. Efforts to improve the former shifted cultivation area (non productive land is developing the settled cultivation by use of irrigation system, better paddy seed, land processing, fertilizing, spraying pesticide, weeding, and better acces to the market.  Local peoples, especially in Kalimantan, has been depended their food on the shifted cultivation pattern since the long time ago.  This tradition could cause forest damage, forest fire, forest degradation, deforestation, and lose out of children education because they were following shifted cultivation activity although itsspace is very far from their home.  This research was aimed to improve former shifted cultivation lands using wetland cultivation in order to improve land productivity and to support food securityin the local community. This research was administratively located in Tanjung Rendan Village, Kapuas Hulu Sub-Ddistrict, Kapuas District, Central Kalimantan Province, Indonesia.  Data of rice yield from settled cultivation and shifted cultivation were got from 15 households that was taking by random at 2010 to 2011. Homogeneity test, analysis of variants, and least significant different (LSD test using SPSS 15.0 for Windows. Result of this research showed that     paddy yield at settled cultivation was significantly differentand better than shifted cultivation at 0.05 level. LSD test also indicated that all paddy yields from settled cultivation were significantly different compare to shifted cultivation at the 0.05 level.  The community in Tanjung Rendan Villages preferred settled cultivation than shifted cultivation, especially due to higher paddy production. Profit for settled cultivation was IDR10.95 million ha-1, meanwhile profit for shifted cultivation was just IDR 2.81 million ha-1 only.  Settled cultivation pattern could

Final report for Assembling Microorganisms into Energy Converting Materials

Energy Technology Data Exchange (ETDEWEB)

Sahin, Ozgur

2018-03-26

The goal of this project was to integrate microorganisms capable of reversible energy transduction in response to changing relative humidity with non-biological materials to create hybrid energy conversion systems. While plants and many other biological organisms have developed structures that are extraordinarily effective in converting changes in relative humidity into mechanical energy, engineered energy transduction systems rarely take advantage of this powerful phenomenon. Rather than developing synthetic materials that can convert changes in relative humidity in to mechanical energy, we developed approaches to assemble bacterial spores into larger materials. These materials can convert energy from evaporation of water in dry atmospheric conditions, which we demonstrated by building energy harvesters from these materials. We have also developed experiments to investigate the interaction of water with the spore material, and to determine how this interaction imposes limits on energy conversion. In addition, we carried out theoretical calculations to investigate the limits imposed by the environmental conditions to the power available in the energy harvesting process. These calculations took into account heat and water vapor transfer in the atmosphere surrounding the spore based materials. Overall, our results suggest that biomolecular materials are promising candidates to convert energy from evaporation.

Cellulase and xylanase productions by isolated Amazon Bacillus strains using soybean industrial residue based solid-state cultivation

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Heck Júlio X.

2002-01-01

Full Text Available In Brazil, a large amount of a fibrous residue is generated as result of soybean (Glycine max protein production. This material, which is rich in hemicellulose and cellulose, can be used in solid state cultivations for the production of valuable metabolites and enzymes. In this work, we studied the bioconversion of this residue by bacteria strains isolated from water and soil collected in the Amazon region. Five strains among 87 isolated bacteria selected for their ability to produce either celullases or xylanases were cultivated on the aforementioned residue. From strain BL62, identified as Bacillus subtilis, it was obtained a preparation showing the highest specific cellulase activity, 1.08 UI/mg protein within 24 hours of growth. Concerning xylanase, the isolate BL53, also identified as Bacillus subtilis, showed the highest specific activity for this enzyme, 5.19 UI/mg protein within 72 hours of cultivation. It has also been observed the production of proteases that were associated with the loss of cellulase and xylanase activities. These results indicated that the selected microorganisms, and the cultivation process, have great biotechnological potential.

TEROIDES THE STUDY OF THE EFFECT OF HIGH AND LOW STARTING TITRE IN THE MODEL ENVIRONMENTS TO CHANGES IN ACTIVE AND TITRATABLE ACIDITY DURING THE CULTIVATION OF WHITE CABBAGE VARIETIES PARUS LACTIC ACID BACTERIA L. LACTIS AND L. MESENTEROIDES

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V. V. Kondratenko

2017-01-01

Full Text Available The aim of the research was to study the dynamics of active and titratable acidity with a low and high initial titer, while cultivating white head cabbage of the variety ‘Parus’ with lactic acid bacteria Leuconostoc lactis VKPM V-12150 and Leuconostoc mesenteroides subsp. mesenteroides VKPM V-8818 in the basic model medium (BMS and the modified model medium (MMC during fermentation . In this experiment, two important questions were considered: the creation of favorable conditions for the growth of lactic acid microorganisms and the suppression of undesirable pathogenic microflora, which can eventually lead to product spoilage. One of the key questions is to scale the results of studies related to the fermentation of plant objects by microorganisms on initially non-sterile raw materials that is the requirement to create as possible fast the conditions that restrain the reproduction of Cl. botulinum, preventing toxin accumulation in the product. Therefore, an important factor is the observance for the necessary boundary condition where for international standards, it reaches pH ≤ 4.6, and for Russian standards it reaches pH ≤ 4.2. Hence, an analysis of the experimental data showed that these boundary conditions were reached after the expiration of essentially different time intervals during the cultivation of microorganisms with different starting titers. As a result, it was shown with which lactic acid microorganisms the optimal parameters for the dynamics of active and titratable acidity were obtained, when the boundary condition reached pH 4.2. Since this value determines more "stringent" requirements for product safety. As a result of studies it was found that optimal parameters for the dynamics of active and titratable acidity when a limit pH value of 4.2 is obtained in the cultivation of lactic acid bacteria L. mesenteroides in the MMC, revealing that the value of the starting titer ranging from 3*103 to 3*105 CFU/g.

Erinacine C: A novel approach to produce the secondary metabolite by submerged cultivation of Hericium erinaceus.

Science.gov (United States)

Wolters, Niklas; Schembecker, Gerhard; Merz, Juliane

2015-12-01

Erinacine C is a cyathane scaffold-based secondary metabolite, which is naturally produced by the filamentous fungus Hericium erinaceus and has a high potential to treat nervous diseases such as Alzheimer's disease. The investigated approach consists of combining an optimised precultivation of H. erinaceus with an enhanced erinacine C production by developing a suitable main cultivation medium enabling the utilisation of high biomass contents. The final erinacine C production medium is buffered by 100 mM HEPES to ensure a stable pH value of 7.5 during main cultivation at inoculation ratios of up to 5:10 (v/v). The medium components, such as 5.0 g L(-1) oatmeal, 1.5 g L(-1) calcium carbonate, and 0.5 g L(-1) Edamin(®) K are crucial for an increased erinacine C production. Besides, different carbon to nitrogen ratios of 25, 64, and 103 do not affect the erinacine C synthesis. The investigated approach enables the production of 2.73 g erinacine C per litre main cultivation broth, which is tenfold higher than published data. In addition, erinacine C biosynthesis is determined to occur mainly in the first six days of main cultivation. Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Using crude glycerol and thin stillage for the production of microbial lipids through the cultivation of Rhodotorula glutinis.

Science.gov (United States)

Yen, Hong-Wei; Yang, Ya-Chun; Yu, Yi-Huan

2012-10-01

Single cell oils (SCO) produced from oleaginous microorganisms are a potential alternative oil feedstock for biodiesel production. The worldwide production of glycerol, a 10% (w/w) byproduct produced in the transesterfication process of oils converted to biodiesel, is increasing as more biodiesel is being produced. For the purposes of cost reduction, crude glycerol was regarded as a suitable carbon source for the cultivation of Rhodotorula glutinis. In addition to using renewable crude glycerol, waste solution collected from the brewing company (called thin stillage) was adopted as a substitute to replace a costly nitrogen source used in the medium. The results of using mixture of crude glycerol and thin stillage indicated about a 27% increase in total biomass as compared to that of using crude glycerol with a standard medium. Using glycerol instead of glucose as the carbon source could also alter the lipid profile, resulting in an increase in linolenic acid (C18:2) to comprise over 20% of the total lipid. Successfully using renewable crude glycerol and thin stillage for the cultivation of oleaginous microorganisms could greatly enhance the economic competition of biodiesel produced from SCO. Copyright © 2012 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

The application of powerful promoters to enhance gene expression in industrial microorganisms.

Science.gov (United States)

Zhou, Shenghu; Du, Guocheng; Kang, Zhen; Li, Jianghua; Chen, Jian; Li, Huazhong; Zhou, Jingwen

2017-02-01

Production of useful chemicals by industrial microorganisms has been attracting more and more attention. Microorganisms screened from their natural environment usually suffer from low productivity, low stress resistance, and accumulation of by-products. In order to overcome these disadvantages, rational engineering of microorganisms to achieve specific industrial goals has become routine. Rapid development of metabolic engineering and synthetic biology strategies provide novel methods to improve the performance of industrial microorganisms. Rational regulation of gene expression by specific promoters is essential to engineer industrial microorganisms for high-efficiency production of target chemicals. Identification, modification, and application of suitable promoters could provide powerful switches at the transcriptional level for fine-tuning of a single gene or a group of genes, which are essential for the reconstruction of pathways. In this review, the characteristics of promoters from eukaryotic, prokaryotic, and archaea microorganisms are briefly introduced. Identification of promoters based on both traditional biochemical and systems biology routes are summarized. Besides rational modification, de novo design of promoters to achieve gradient, dynamic, and logic gate regulation are also introduced. Furthermore, flexible application of static and dynamic promoters for the rational engineering of industrial microorganisms is highlighted. From the perspective of powerful promoters in industrial microorganisms, this review will provide an extensive description of how to regulate gene expression in industrial microorganisms to achieve more useful goals.

Organotins and microorganisms. Yuki suzu kagobutsu to biseibutsu

Energy Technology Data Exchange (ETDEWEB)

Shinoda, S.; Onogi, H. (Okayama Univ., Okayama (Japan). Faculty of Pharmaceutical Sciences)

1992-08-10

Tributyltin (TBT) and triphenyltin have higher toxicity than other organotin compounds and are used as biocides, but in recent years the pollution of water and aquatic organisms has become a social problem. This paper describes the interaction between organotin compounds and microorganisms, centering on the decomposition of TBT. Part of microalgae whose activity is promoted by light or nutritive salts within an aquatic environment play an important role in TBT decomposition. Diatoms, and dinoflagellataes are mentioned as the examples. Moreover, an example in which microorganisms promote the transformation of inorganotin compounds to dimethyltin or trimethyltin is given. However, it is pointed out in this paper that the action of microorganisms relates greatly to the continuance of existence of organotins in environments, but the degradation efficiency is considered to be very low and prevention against pollution is of primary importance. 32 refs., 2 figs., 3 tabs.

A novel cannulation technique for difficult urethral catheterization

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Mehmet Kaynar

2016-03-01

Full Text Available Introduction: To propose a novel cannulation technique for difficult urethral catheterization procedures. Technique: The sheath tip of an intravenous catheter is cut off, replaced to the needle tip and pushed through the distal drainage side hole to Foley catheter tip, and finally withdrawn for cannulation. In situations making urethral catheterization difficult, a guide wire is placed under direct vision. The modified Foley catheter is slid successfully over the guide wire from its distal end throughout the urethral passage into the bladder. Results: The modified Foley catheter was used successfully in our clinic in cases requiring difficult urethral catheterization. Conclusions: This easy and rapid modification of a Foley catheter may minimize the potential complications of blind catheter placement in standard catheterization.

Bacterial community analysis of an industrial wastewater treatment plant in Colombia with screening for lipid-degrading microorganisms.

Science.gov (United States)

Silva-Bedoya, Lina Marcela; Sánchez-Pinzón, María Solange; Cadavid-Restrepo, Gloria Ester; Moreno-Herrera, Claudia Ximena

2016-11-01

The operation of wastewater treatment technologies depends on a combination of physical, chemical and biological factors. Microorganisms present in wastewater treatment plants play essential roles in the degradation and removal of organic waste and xenobiotic pollutants. Several microorganisms have been used in complementary treatments to process effluents rich in fats and oils. Microbial lipases have received significant industrial attention because of their stability, broad substrate specificity, high yields, and regular supply, as well as the fact that the microorganisms producing them grow rapidly on inexpensive media. In Colombia, bacterial community studies have focused on populations of cultivable nitrifying, heterotrophic and nitrogen-fixing bacteria present in constructed wetlands. In this study, culture-dependent methods, culture-independent methods (TTGE, RISA) and enzymatic methods were used to estimate bacterial diversity, to monitor temporal and spatial changes in bacterial communities, and to screen microorganisms that presented lipolytic activity. The dominant microorganisms in the Wastewater Treatment Plant (WWTP) examined in this study belonged to the phyla Firmicutes, Proteobacteria and Bacteroidetes. The enzymatic studies performed indicated that five bacterial isolates and three fungal isolates possessed the ability to degrade lipids; additionally, the Serratia, Kosakonia and Mucor genera presented lipase-mediated transesterification activity. The implications of these findings in regard to possible applications are discussed later in this paper. Our results indicate that there is a wide diversity of aerobic Gram-negative bacteria inhabiting the different sections of the WWTP, which could indicate its ecological condition, functioning and general efficiency. Copyright © 2016 Elsevier GmbH. All rights reserved.

Improving polyglucan production in cyanobacteria and microalgae via cultivation design and metabolic engineering.

Science.gov (United States)

Aikawa, Shimpei; Ho, Shih-Hsin; Nakanishi, Akihito; Chang, Jo-Shu; Hasunuma, Tomohisa; Kondo, Akihiko

2015-06-01

Photosynthetic microorganisms, such as cyanobacteria and microalgae, are currently being investigated as alternative biomass resources for bioethanol production, owing to their benefits, including high-photosynthetic activity and whole-year cultivation without utilization of arable land. Polyglucans comprise the major carbohydrate content of these organisms. Polyglucans can be utilized as a carbon source for microbial fermentation. Although polyglucan production has so far been promoted by nutrient limitation, it must be further enhanced to accommodate market demand. This review focuses on the recent progress in the production of α-polyglucans such asglycogen and starch in cyanobacteria and green microalgae via cultivation design, including modifying the nutrient supply and replacing the growth medium. The control and manipulation of polyglucan metabolism necessitates the elucidation of the polyglucan production mechanism. We reviewed gene expression and metabolite accumulation profiles of cyanobacteria and green microalgae during nutrient limitation-stimulated α-polyglucan accumulation. We also focus on the enhancement in cyanobacterial glycogen production via the genetic engineering of glycolysis, CO2 concentration mechanism, and photosynthetic light-harvesting protein based on the polyglucan accumulation mechanism. The combined strategies of cultivation design and genetic engineering should be considered for further enhancement of polyglucan productivity for bioethanol production. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Phytoremediation of radiocesium in different soils using cultivated plants

International Nuclear Information System (INIS)

Suzuki, Yasukazu; Saito, Takashi; Tsukada, Hirofumi

2013-01-01

A huge amount of radionuclides were released into the environment after the Fukushima Daiichi nuclear power plant accident. Radiocesium, which is one of the more prevalent radionuclides, was deposited in the soil. It is well known that radiocesium is adsorbed into the soil and binds strongly to clay. As a result, it is difficult to reduce the contamination level in the soil. We examine the possibility of decontamination by means of phytoremediation. Four species of plants (sunflower, sorghum, amaranth, and buckwheat) were sown in light-colored Andosol and gray lowland soil. When the plants matured, they were harvested and separated into their different parts, i.e., flower, leaf, stem, and root. The removal percentage of "1"3"7Cs for the aboveground parts, which is defined as the ratio of the total content of "1"3"7Cs in the aboveground biomass of plants to that in the cultivated soil of 0-15 cm depth, was 0.013- 0.93% for the light-colored Andosol and 0.0072-0.038% for the gray lowland soil. The plants exhibiting the highest value cultivated in the light-colored Andosol and gray lowland soil were amaranth (0.093%) and sunflower (0.038%), respectively. This indicates that it is difficult to remove radiocesium from contaminated soil by means of phytoremediation. (author)

Microorganisms having enhanced tolerance to inhibitors and stress

Energy Technology Data Exchange (ETDEWEB)

Brown, Steven D.; Yang, Shihui

2014-07-29

The present invention provides genetically modified strains of microorganisms that display enhanced tolerance to stress and/or inhibitors such as sodium acetate and vanillin. The enhanced tolerance can be achieved by increasing the expression of a protein of the Sm-like superfamily such as a bacterial Hfq protein and a fungal Sm or Lsm protein. Further, the present invention provides methods of producing alcohol from biomass materials by using the genetically modified microorganisms of the present invention.

Comparison of Paraffin and Diesel Oil as Cultivation Medium Supplements for Preparing a Hydrocarbon-Degrading Bacterial Biomass

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Dokukins Eduards

2016-05-01

Full Text Available The effect of liquid paraffin and diesel oil as nutrient amendments for hydrocarbon-degrading bacteria was compared. Different parameters were analyzed - optical density of bacterial suspension, oxygen consumption by biomass, morphology of bacteria, etc. In some experiments the paraffin was more preferable for microorganisms, but in other tests the results for both substances were similar. The influence of the comparable substances strongly depends on cultivation conditions.

Characterization of the endomycorrhizal and seven groups of microorganisms in agro systems of the amazon piedmont

International Nuclear Information System (INIS)

Franco Castro, Luis Antonio; Garcia Conde, Mary Ruth

2012-01-01

This study characterized the functional structure, the diversity of the community of endomycorrhizae and population size of seven functional groups of microorganisms in soils under four different uses of land or agro systems (forest, cane, pasture, and cultivation of coffee), the which were located in a production unit in the rural area of Florencia-Caqueta. From samples of surface soil (0-20 cm) were determined agro ecosystems soil physical and chemical properties, the size of populations seven functional groups of microorganisms, the structure of the community to endomycorrhizae (spore density, density mycelium total) and diversity (richness, dominance, equity indices). It was found that the change in natural cover on the land use implications in population size of certain bacterial groups in the structure and functional diversity of endomycorrhizae. Was also be determined the population structure of soil microbiota is particular to each vegetation type and population size is strongly related to levels of soil nutrients, which come from the mineralization of organic matter.

Different cultivation methods to acclimatise ammonia-tolerant methanogenic consortia

DEFF Research Database (Denmark)

Tian, Hailin; Fotidis, Ioannis; Mancini, Enrico

2017-01-01

reactors (i.e. batch, fed-batch and continuous stirred-tank reactors (CSTR)) operated at mesophilic (37°C) and thermophilic (55°C) conditions were assessed, based on methane production efficiency, incubation time, TAN/FAN (total ammonium nitrogen/free ammonia nitrogen) levels and maximum methanogenic...... activity. Overall, fed-batch cultivation was clearly the most efficient method compared to batch and CSTR. Specifically, by saving incubation time up to 150%, fed-batch reactors were acclimatised to nearly 2-fold higher FAN levels with a 37%-153% methanogenic activity improvement, compared to batch method....... Meanwhile, CSTR reactors were inhibited at lower ammonia levels. Finally, specific methanogenic activity test showed that hydrogenotrophic methanogens were more active than aceticlastic methanogens in all FAN levels above 540 mg NH3-N L-1....

Current trends for improving the design of membrane devices for photoautotrophic biosynthesis is light dependent microorganisms

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A. A. Shevtsov

2016-01-01

Full Text Available Modern trends in improving the design of membrane devices for photoautotrophic biosynthesis dependent lighting microorganisms aimed at a significant increase in the productivity of valuable products from biomass of microalgae and obtaining on the basis of their individual useful substances (drugs used in various industries and medicine. In film devices effectively the processes of heat - and mass-exchange with the gas comes into contact with the culture fluid flowing as a film on a transparent film-forming surface is STI in its light intensity and autotrophic biosynthesis occurs only in the presence of a mixture of air with carbon dioxide. Thus, completely eliminated the accumulation of metabolic products due to their continuous removal from film culture liquid with the process gas, which is not typical for devices of other types. Small size membrane bioreactors may increase the degree of saturation of the liquid carbon dioxide with the possibility of changing the concentration of gas in the culture fluid and to ensure the cultivation of microorganisms with a specified biomass yield. At present up to date-developed a significant number of ways to ensure contact of the gas with the liquid (bubbling, gas-lift, mechanical stirring, jet, membrane, etc. on the basis of which an industrial bioreactor, with various "stress" effect. It is believed that for the cultivation of the most optimal are bioreactors with mechanical stirring of the liquid, which allow the greatest productivity of biomass. However, the applied model of a mechanical mixing device to create a work whose cavity of the bioreactor chaotic, disorganized mixing, which contributes to the emergence, insufficient for the sustenance of the cell cultures and microorganisms. Analysis of the interactions of the gas with the liquid film devices showed the need to create a new generation of bioreactor with intensive mass transfer without the possibility of limiting the productivity of

Use of Maldi-Tof Mass spectrometry in direct microorganism identification in clinical laboratories

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Tamara Brunelli

2010-09-01

Full Text Available Mass Spectrometry is an old technique that has recently been introduced in the clinical microbiology laboratory as Matrix Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry (MALDI-TOF MS. MALDI is a soft ionization technique used in mass spectrometry that allows the analysis of biomolecules and large organic molecules which tend to be fragile and fragment when ionized.To obtain ions biological specimens are mixed with a matrix which specifically absorbs the ionization source (a laser beam. The high energy impact is followed by the formation of ions which are extract through an elastic field, focussed and detected as mass/charge (m/z spectrum.The differences between ions are seen with TOF, a revelation system that relates the time of flight of a ion to the charge/mass value: ion with a higher m/z have are slower (a bigger time of flight than ions with lower m/z. MALDI-TOF MS, in clinical microbiology laboratory, is used to identify bacteria and fungi directly from samples. The identification of microorganisms can be performed directly from body fluids (e.g. urine, blood culture, after centrifugation and recovery of microorganisms or from colonies (after cultivation. The rapidity of identification is of great importance in blood cultures. Positive cultures with one microorganism are processed in a different way than those with more than one microorganism. In positive monomicrobial cultures, after separation of microbs from blood cells,we can perform an immediate identification with MALDI-TOF MS that we can communicate to the clinician, and that gives indication to perform the correct antibiogram. Major problems are present when more than one microorganism are in the culture: in this case we have to use the method of subcultivation and then the identification with mass-spectrometry can be performed. MALDI-TOF MS is a rapid, reliable and low cost technique, that can identify a growing number of microorganisms. This technique can

Development of genetic methods for detection of pathogenic microorganisms in irradiated food

International Nuclear Information System (INIS)

2010-01-01

The existence of injured microorganisms in food and their recovery during culturing procedures is critical. Injured microorganisms present a potential threat in food safety since they may repair themselves under suitable conditions. This study provides development of recovery methods for detection of injured foodborne microorganisms, after irradiation treatment at different doses. For this purpose, iniatially the methods of recovery were compared at different irradiation doses. At the second step, antibiotic resistance of foodborne pathogens was determined. After determination of antibiotic resistance, recovery methods were modified for reversibly injured foodborne pathogens at different doses after irradiation treatment . Finally, damages of DNA were detected by a spectrophotometric method after 1.0 kGy irradiation treatment

Enzyme controlled glucose auto-delivery for high cell density cultivations in microplates and shake flasks

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Casteleijn Marco G

2008-11-01

Full Text Available Abstract Background Here we describe a novel cultivation method, called EnBase™, or enzyme-based-substrate-delivery, for the growth of microorganisms in millilitre and sub-millilitre scale which yields 5 to 20 times higher cell densities compared to standard methods. The novel method can be directly applied in microwell plates and shake flasks without any requirements for additional sensors or liquid supply systems. EnBase is therefore readily applicable for many high throughput applications, such as DNA production for genome sequencing, optimisation of protein expression, production of proteins for structural genomics, bioprocess development, and screening of enzyme and metagenomic libraries. Results High cell densities with EnBase are obtained by applying the concept of glucose-limited fed-batch cultivation which is commonly used in industrial processes. The major difference of the novel method is that no external glucose feed is required, but glucose is released into the growth medium by enzymatic degradation of starch. To cope with the high levels of starch necessary for high cell density cultivation, starch is supplied to the growing culture suspension by continuous diffusion from a storage gel. Our results show that the controlled enzyme-based supply of glucose allows a glucose-limited growth to high cell densities of OD600 = 20 to 30 (corresponding to 6 to 9 g l-1 cell dry weight without the external feed of additional compounds in shake flasks and 96-well plates. The final cell density can be further increased by addition of extra nitrogen during the cultivation. Production of a heterologous triosphosphate isomerase in E. coli BL21(DE3 resulted in 10 times higher volumetric product yield and a higher ratio of soluble to insoluble product when compared to the conventional production method. Conclusion The novel EnBase method is robust and simple-to-apply for high cell density cultivation in shake flasks and microwell plates. The

[Correlation analysis of nutrients and microorganisms in soils with polyphenols and total flavonoids of Houttuynia cordata].

Science.gov (United States)

Wu, Dan; Luo, Shi-qiong; Yang, Zhan-nan; Ma, Jing; Hong, Liang

2015-04-01

The relationship of nutrients and microorganisms in soils with polyphenols and total flavonoids of Houttuynia cordata were investigated by measuring nutrients, enzyme activity, pH, concentrations of microbe phospholipid fatty acids (PLFAs) in soils, and determining concentrations of polyphenols and total flavonoids of H. cordata. The research is aimed to understand characteristics of the planting soils and improve the quality of cultivated H. cordata. The soils at different sample sites varied greatly in nutrients, enzyme activity, pH, microbic PLFAs and polyphenols and all flavonoids. The content of total PLFAs in sample sites was following: bacteria > fungi > actinomyces > nematode. The content of bacteria PLFAs was 37.5%-65.0% at different sample sites. Activities of polyphenol oxidease, concentrations of available P and content of PLFAs of bacteria, actinomyces and total microorganisms in soils were significantly and positively related to the concentrations of polyphenols and total flavonoids of H. cordata, respectively (P soils was significantly and negatively related to concentrations of polyphenols and total flavonoids of H. cordata, respectively (P soil nutrient, which may be improved due to transformation of soil microorganisms and enzymes to N and P in the soils, was beneficial to adaptation of H. cordata adapted to different soil conditions, and significantly affects metabolic accumulation of polyphenols and flavonoids of H. cordata.

Effects of phosphate-solubilizing bacteria, native microorganisms, and rock dust on Jatropha curcas L. growth.

Science.gov (United States)

Santana, E B; Marques, E L S; Dias, J C T

2016-10-05

Microorganisms with the ability to release nutrients to the soil from insoluble sources may be useful for plant cultivation. We evaluated the growth-promoting effect on Jatropha curcas L. of phosphate-solubilizing bacteria (PSB) and the native microbiota in soil with or without rock dust. J. curcas L. is important for biodiesel production. The experiments were performed in a greenhouse under a random-statistical design with 14 replicates. The soil received increasing dosages of rock dust. The presence of resident microorganisms and PSB inoculum was correlated with plant height, biomass production, and phosphorus content in plants for 120 days. Native soil microorganisms were detected and identified using denaturing gradient gel electrophoresis and DNA sequence analysis. Several bacterial populations belonged to the genus Bacillus. Populations associated with the phyla Chytridiomycota and Ascomycota were detected among the fungi. The best results for the variable plant height were correlated with the presence of resident microbiota and rock dust until the end of the experiment. The largest biomass production and the highest content of phosphorus occurred in the presence of soil-resident microbiota only up to 120 days. No significant effects were observed for biomass production with the use of PSB combined with rock dust. J. curcas L. under the influence of only resident microbiota showed the best plant growth results. Future research will focus on the specificity of resident microbiota activity in plant growth promotion and the isolation of these microorganisms to produce a new inoculum to be tested in various plants.

Ventilator-Associated Pneumonia and Causative Microorganisms in Intensive Care Unit: A Two Year Retrospective Analysis

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Onur Palabıyık

2016-12-01

Full Text Available Objective: Ventilator-associated pneumonia (VAP is the most common nosocomial infection in the intensive care units (ICUs. It causes prolonged hospital stay and increases mortality. In this study, we aimed to investigate the rate of VAP, causative microorganisms, and their antibiotic susceptibilities in anaesthesiology and reanimation ICU (ARICU. Material and Method: This retrospective study included patients who were admitted to 12-bed ARICU between January 2013 and December 2014. The detection of VAP was done according to Centers for Disease Control and Prevention criteria. The rate of VAP, VAP ratio, and ventilator utilization ratio (VUR were calculated according to guidelines of Turkish National Infection Surveillance Control Group. Endotracheal aspiration samples were collected and cultivated. The identification of the isolates was performed by using VITEK-2 automated system. Antibiotic susceptibilities were determined by the disc diffusion method according to the Clinical and Laboratory Standards Institute criteria. Results: VAP was determined in 16 of 359 patients who required invasive mechanic ventilation for longer than 48 hours and hospitalized in ARICU. VUR was 65%, VAP ratio was 4.5% and the rate of VAP was 3.3 per 1000 ventilator days. Seventeen microorganisms were isolated from endotracheal aspiration samples, including Acinetobacter baumannii (n=6, Pseudomonas aeruginosa (n=4, methicillin-resistant Staphylococcus aureus (n=4, Klebsiella pneumoniae, Enterobacter cloacae and Serratia marcescens. The most sensitive antibiotics for microorganisms are listed as follows; Acinetobacter baumannii: colistin, Pseudomonas aeruginosa: amikacin, carbapenems; Methicillin-resistant Staphylococcus aureus: linezolid, teicoplanin, vancomycin, trimethoprim sulfamethoxazole; Klebsiella and Enterobacteriaceae species: carbapenems, trimethoprim sulfamethoxazole, gentamicin. Conclusion: Intermittent analyses and antibiotic susceptibilities of VAP

Traditional pattern of cashew cultivation : A lesson from Sumenep-Madura, Indonesia

Science.gov (United States)

Jadid, Nurul; Sutikno, Dewi, Dyah Santhi; Nurhidayati, Tutik; Abdulgani, Nurlita; Muzaki, Farid Kamal; Arraniry, Byan Arasyi; Mardika, Rizal Kharisma; Rakhman, R. Yuvita

2017-11-01

Belonging to the Anacardiaceae family, the cashew tree (Anacardium Occidentale, Linn.) is one of the important tropical plants that possess high economic value. This plant is commonly grown in Indonesian regions including Sumenep, Madura, where the red sandy loam type of soil is commonly present. This study aims to obtain rough data on the pattern of cashew cultivation and identify the cashew cultivation knowledge of local communities. Data were taken in Bringin village, Sumenep-Madura. Our field survey showed that the cashew's cultivation pattern in this village applies the so-called traditional organic farming. Cashew trees are planted along the boundaries of the owner's farm field, functioning as a fence of their farm. Nevertheless, our survey also indicated that this pattern of cultivation is still below standard of cultivation. The planting distance between the cashew trees with one another is relatively close (< 5 meters), causing the cashew branches to overlap with each other. Moreover, we observed that there was no rejuvenation of old cashew trees. Finally, knowledge of the community about post-harvest processing is limited. Therefore, we suggest that educating the community about good standard cashew cultivation is required to improve productivity as well as the quality of cashew nuts.

Energy efficient cultivation strategy in springtime and summer. Final report; Energiezuinige teeltstrategie in voorjaar en zomer. Eindrapport

Energy Technology Data Exchange (ETDEWEB)

Raaphorst, M. [Business Unit Glastuinbouw, Praktijkonderzoek Plant en Omgeving PPO, Wageningen (Netherlands); Kempkes, F.; Elings, A.; Dieleman, A. [Plant Research International, Wageningen (Netherlands)

2006-12-15

In the summer, energy use in most types of cultivation depends mostly on the CO2 need, which is determined by the desired CO2 concentration in the greenhouse and the window opening. Based on the results of a literature study, knowledge of crop experts and model calculations with altered and standard cultivation strategy the aim is to demonstrate that CO2 and energy can be deployed more efficiently. Chapter 2 briefly discusses the working method and lists the cases for cucumber. Next, Chapter 3 discusses in more detail the extent to which environment factors such as light, CO2 and temperature influence photosynthesis and plant growth and how this has been processed in growth models. Chapter 4 shows the results in the area of production, energy saving and business economics for seven cases. In addition several reactions of growers are included. Chapter 5, finally, addresses several points for discussion and provides conclusions and recommendations. (mk) [Dutch] Gedurende de zomermaanden is het energieverbruik in de meeste teelten vooral afhankelijk van de CO2 behoefte, bepaald door de gewenste CO2 concentratie in de kas en de raamopening. Gebaseerd op de resultaten van een literatuuronderzoek, aanwezige kennis bij gewasdeskundigen en modelberekeningen met gewijzigde en standaard teeltstrategie moet worden aangetoond dat CO2 en energie efficienter kunnen worden ingezet. In hoofdstuk 2 worden kort de werkwijze en de te behandelen cases voor komkommer weergegeven. Vervolgens wordt in hoofdstuk 3 uitgebreid ingegaan in hoeverre de omgevingsfactoren licht, CO2 en temperatuur de fotosynthese en de groei van de plant beinvloeden en hoe dit in groeimodellen is verwerkt. In hoofdstuk 4 staan de resultaten op het gebied van productie, energiebesparing en bedrijfseconomie voor zeven cases vermeld. Bovendien wordt hier ingegaan op de reacties van telers hierop. Ten slotte komen in hoofdstuk 5 enkele discussiepunten aan bod, worden conclusies getrokken en aanbevelingen gegeven.

Functional Basis of Microorganism Classification.

Science.gov (United States)

Zhu, Chengsheng; Delmont, Tom O; Vogel, Timothy M; Bromberg, Yana

2015-08-01

Correctly identifying nearest "neighbors" of a given microorganism is important in industrial and clinical applications where close relationships imply similar treatment. Microbial classification based on similarity of physiological and genetic organism traits (polyphasic similarity) is experimentally difficult and, arguably, subjective. Evolutionary relatedness, inferred from phylogenetic markers, facilitates classification but does not guarantee functional identity between members of the same taxon or lack of similarity between different taxa. Using over thirteen hundred sequenced bacterial genomes, we built a novel function-based microorganism classification scheme, functional-repertoire similarity-based organism network (FuSiON; flattened to fusion). Our scheme is phenetic, based on a network of quantitatively defined organism relationships across the known prokaryotic space. It correlates significantly with the current taxonomy, but the observed discrepancies reveal both (1) the inconsistency of functional diversity levels among different taxa and (2) an (unsurprising) bias towards prioritizing, for classification purposes, relatively minor traits of particular interest to humans. Our dynamic network-based organism classification is independent of the arbitrary pairwise organism similarity cut-offs traditionally applied to establish taxonomic identity. Instead, it reveals natural, functionally defined organism groupings and is thus robust in handling organism diversity. Additionally, fusion can use organism meta-data to highlight the specific environmental factors that drive microbial diversification. Our approach provides a complementary view to cladistic assignments and holds important clues for further exploration of microbial lifestyles. Fusion is a more practical fit for biomedical, industrial, and ecological applications, as many of these rely on understanding the functional capabilities of the microbes in their environment and are less concerned with

[ACID-BASE MODULATION OF LYSOZYME ACTIVITY IN MEDIUM FOR CULTIVATION OF ENTEROBACTERIA].

Science.gov (United States)

Andryuschenko, S V; Perunova, N B

2015-01-01

Determination of modulating effect of acid-base state of medium for cultivation of enterobacteria on activity of C-type lysozyme. Escherichia coli BL21 (DE3) strain for protein expression, Escherichia coli K12 MG1655 model strain, Escherichia coli No. 242 strain, isolated from intestine biotope; 2 Klebsiella pneumoniae strains, one of those contained plasmid homologue of periplasmatic lysozyme inhibitor gene pliC; 1 typical Salmonella enterica ATCC 14028 strain and a Micrococcus luteus ATCC 15307 strain as a control--served as material for the study. The bacteria were cultivated for 24 hours in 2 ml of liquid medium LB at 37 degrees C, 250 rpm. Determination of antilysozyme activity (ALA) was carried out by a photonepehlometrical method according to O.V. Bukharin et al. (1999) with alterations. All the studied microorganisms, including Micrococcus luteus, at the specified conditions 24 hours after cultivation were established to change the pH of the liquid nutrient medium LB from the initial value of 6.6 ± 0.1 to 8.2 ± 0.2 units. ALA determination in the cultivation medium without buffer correction was accompanied by a decline of lysozyme activity at an order of magnitude. The effect was absent during ALA measurement by a standard technique. The local shift of acid-base state of biotope under the conditions of buffer system insufficiency results in a reversible alteration of antimicrobial activity of muramidase, that among other non-specific factors of the environment determines the background of interactions on the level of associative symbiosis. This aspect should be taken into consideration during development of models, that are close to real conditions of microsymbiocenotical interactions.

The formation of microorganism communities in the soil under the effect of chitosan and runner bean (Phaseolus coccineus L. cultivation

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Danuta Pięta

2013-12-01

Full Text Available The subject of the studies was the soil with introduced solutions containing 0,1% chitosan. These materials were obtained from the Institute of Chemical Fibres in L6d2 (in the form of a microcrystalline gel and also from the Department of Food Biochemistry and Chemistry of the University of Agriculture in Lublin (in a liquid form,i.e.dissolved in acetic acid. In order to set an experiment in a growth chamber, grey brown podzolic soil formed from loesses and taken from a mechanically treated belt of black fallow was used. The soil (1000 g was watered every 8 days with 100 ml of examined chitosan solutions per pot. Control soil was watered with sterile distilled water. Seven days after each watering, soil samples were taken for microbiological analysis. Then 25 runner bean seeds were sown into each pot. After six weeks of plants' growth the experiment was finished and the number of plants was counted, their healthiness determined and soil microbiological analysis was performed. Regardless of chitosan form introduced to the soil it stimulated the growth of bacteria and fungi, since in these experimental combinations was found a significantly higher number of microorganisms as compared with the control. A particular high increase in the number of microorganism colonies was observed with simultaneous growth of plants and the application of chitosan. A considerable increase of fungi colonies from the Trichoderma genus was found in the soil treated with chitosan in the form ofboth a microcrystalline gel and a liquid. The species of this genus are considered to be antagonists; it affects pathogenic fungi through competition, antibiosis and over-parasitism. An increase in colonies of saprophytic microorganisms, including antagonistic ones of Bacillus spp. and Pseudomonas spp. was observed in the soil treated with chitosan . On the other hand, in the soil after the growth of bean and treated watered with chitosan only few colonies of Fusarium oxysporum f

40 CFR 725.67 - Applications to exempt new microorganisms from this part.

Science.gov (United States)

2010-07-01

...) The effects of the new microorganism on health and the environment. (ii) The magnitude of exposure of human beings and the environment to the new microorganism. (iii) The benefits of the new microorganism... economic consequences of granting or denying the exemption, including effects on the national economy...

Impacts of surface water diversions for marijuana cultivation on aquatic habitat in four northwestern California watersheds.

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Scott Bauer

Full Text Available Marijuana (Cannabis sativa L. cultivation has proliferated in northwestern California since at least the mid-1990s. The environmental impacts associated with marijuana cultivation appear substantial, yet have been difficult to quantify, in part because cultivation is clandestine and often occurs on private property. To evaluate the impacts of water diversions at a watershed scale, we interpreted high-resolution aerial imagery to estimate the number of marijuana plants being cultivated in four watersheds in northwestern California, USA. Low-altitude aircraft flights and search warrants executed with law enforcement at cultivation sites in the region helped to validate assumptions used in aerial imagery interpretation. We estimated the water demand of marijuana irrigation and the potential effects water diversions could have on stream flow in the study watersheds. Our results indicate that water demand for marijuana cultivation has the potential to divert substantial portions of streamflow in the study watersheds, with an estimated flow reduction of up to 23% of the annual seven-day low flow in the least impacted of the study watersheds. Estimates from the other study watersheds indicate that water demand for marijuana cultivation exceeds streamflow during the low-flow period. In the most impacted study watersheds, diminished streamflow is likely to have lethal or sub-lethal effects on state- and federally-listed salmon and steelhead trout and to cause further decline of sensitive amphibian species.

Effects of selected thermophilic microorganisms on crude oils at elevated temperatures and pressures. Final report

Energy Technology Data Exchange (ETDEWEB)

Premuzic, E.T.; Lin, M.S.

1995-07-01

During the past several years, a considerable amount of work has been carried out showing that microbially enhanced oil recovery (MEOR) is promising and the resulting biotechnology may be deliverable. At the Brookhaven National Laboratory (BNL), systematic studies have been conducted which dealt with the effects of thermophilic and thermoadapted bacteria on the chemical and physical properties of selected types of crude oils at elevated temperatures and pressures. Particular attention was paid to heavy crude oils from Venezuela, California, Alabama, Arkansas, Wyoming, Alaska, and other oil producing areas. Current studies indicate that during the biotreatment several chemical and physical properties of crude oils are affected. The oils are (1) emulsified; (2) acidified; (3) there is a qualitative and quantitative change in light and heavy fractions of the crudes; (4) there are chemical changes in fractions containing sulfur compounds; (5) there is an apparent reduction in the concentration of trace metals; (6) the qualitative and quantitative changes appear to be microbial species dependent; and (7) there is a distinction between {open_quotes}biodegraded{close_quotes} and {open_quotes}biotreated{close_quotes} oils. Preliminary results indicate the introduced microorganisms may become the dominant species in the bioconversion of oils. These studies also indicate the biochemical interactions between crude oils and microorganisms follow distinct trends, characterized by a group of chemical markers. Core-flooding experiments have shown significant additional crude oil recoveries are achievable with thermophilic microorganisms at elevated temperatures similar to those found in oil reservoirs. In addition, the biochemical treatment of crude oils has technological applications in downstream processing of crude oils such as in upgrading of low grade oils and the production of hydrocarbon based detergents.

Difficult to control atopic dermatitis

NARCIS (Netherlands)

U. Darsow (U.); A. Wollenberg (A.); D. Simon; A. Taieb; T. Werfel; A.P. Oranje (Arnold); C. Gelmetti (C.); Ã. Svensson (Ãke); M. Deleuran (M.); A.M. Calza; F. Giusti; J. Lübbe (Jann); S. Seidenari (Stefania); J. Ring (J.)

2013-01-01

textabstractDifficult to control atopic dermatitis (AD) presents a therapeutic challenge and often requires combinations of topical and systemic treatment. Anti-inflammatory treatment of severe AD most commonly includes topical glucocorticosteroids and topical calcineurin antagonists used for

Protein production by Arthrospira (Spirulina platensis in solid state cultivation using sugarcane bagasse as support

Directory of Open Access Journals (Sweden)

Lúcia Helena Pelizer

2015-03-01

Full Text Available The genus Arthrospira comprises a group of filamentous multicellular cyanobacteria and can be used for animal feed and human food. Solid state fermentation or cultivation (SSF involves the use of a culture medium composed of solid material with given moisture content. No studies have been published about the cultivation of microalgae or cyanobacteria on solid medium. Furthermore, although sugar-cane bagasse is used as source of energy in alcohol distilleries in Brazil, the excess could be a support to photosynthetic microorganism growth. The experimental design methodology was used to evaluate the protein production by Arthrospira platensis under SSF using sugarcane bagasse as support, taking into account the moisture content of the medium, light intensity and inoculum concentration. Moisture was found to have a strong influence on the performance of the process. The best conditions were: moisture of 98.8%; inoculum concentration of 0.15 g biomass·kg wet culture medium−1 and light intensity of 6.0 klx.

Identification and Characterization of Extremophile Microorganisms with Significance to Astrobiology

Science.gov (United States)

Bej, Asim K.

2003-01-01

It is now well recognized that microorganisms thrive in extreme ecological conditions such as geothermal vents, polar region, acid and alkaline lakes, and the cold pressurized depth of the ocean floor of this planet. Morphological, physiological, biochemical and genetic adaptations to extreme environments by these extremophile microorganisms have generated immense interest amongst astrobiologists who increasingly believe in the existence of extraterrestrial life. The evidence collected by NASA's space probe Galileo suggested the presence of liquid water and volcanic activity on Mars and Jupiter's satellite Europa. Volcanic activity provides some of the heat necessary to keep the water on Europa from freezing that could provide important dissolved chemicals needed by living organisms. The possibility of the existence of hypersaline alkaline lakes and evaporites confined within closed volcanic basins and impact craters on Mars, and a layer of liquid water under the ice on Europa provide sufficient 'raison d'etre' to study microorganisms in similar extreme environments on Earth, which could provide us with a model that would help establish the existence of extraterrestrial life on other planetary bodies. The objectives of the summer research project were as follows: (1) application of molecular approaches to help establish new species of extremophile microorganisms isolated from a hypersaline alkaline lake; and (2) identification of a major cold-shock gene (cspA) homolog from a psychrotolerant microorganism, PmagG1.

The cultivation of the mushroom Agaricus bisporus (Champignon) and some environmental and health aspects.

Science.gov (United States)

Zicari, Giuseppe; Rivetti, Daniela; Soardo, Vincenzo; Cerrato, Elena

2012-01-01

The cultivation of the mushroom Agaricus bisporus, also known as button mushroom, requires the use of substrates for its cultivation, such as chicken and/or horse manure and the application of manufacturing steps, such as storage and composting that produce odours. The odours may cause disturbance to people living near the plant and may be a problem for workers. This article examines some measures that can be taken to reduce the odorous emissions during the production of Agaricus bisporus. The possibility of recovery of some organic matter left from the cultivation is examined. Finally, some occupational hazards for workers are highlighted.

Biotechnical leaching of lean ores using heterotrophic microorganisms

International Nuclear Information System (INIS)

Schwartz, W.; Naeveke, R.

1980-01-01

After reporting briefly on leaching with Thiobacillus, it is discussed whether in those cases where thiobacilli fail to work the limits of microbial leaching are reached or still other groups of microorganisms will be suitable. In this relation the great number of carbon-heterotrophic fungi and bacteria have to be considered which are partly oligotrophic and occur e.g. in weathering biotopes of rocks and minerals and which may even include heavy metals in the dissolving processes of weathering. The active agents are, as far as is known up to now, organic acids which are produced by microorganisms and given off to the medium where they may combine with metals to form water-soluble complex compounds. In order to detect and isolate suitable strains of fungi and bacteria it will be necessary to work out a screening program which proceeds from general to special selections. Experiments to identify the active agents and the conditions of their production will have to follow. It remains still an open question whether such studies will result in technical processes. Mass production processes which are possible with the carbon-autotrophic and acidophilic thiobacilli are less probable than special processes to get hold of rare and economically valuable metals whose extraction would be difficult by other means. (orig.) [de

Calculation of the radiative properties of photosynthetic microorganisms

International Nuclear Information System (INIS)

Dauchet, Jérémi; Blanco, Stéphane; Cornet, Jean-François; Fournier, Richard

2015-01-01

A generic methodological chain for the predictive calculation of the light-scattering and absorption properties of photosynthetic microorganisms within the visible spectrum is presented here. This methodology has been developed in order to provide the radiative properties needed for the analysis of radiative transfer within photobioreactor processes, with a view to enable their optimization for large-scale sustainable production of chemicals for energy and chemistry. It gathers an electromagnetic model of light-particle interaction along with detailed and validated protocols for the determination of input parameters: morphological and structural characteristics of the studied microorganisms as well as their photosynthetic-pigment content. The microorganisms are described as homogeneous equivalent-particles whose shape and size distribution is characterized by image analysis. The imaginary part of their refractive index is obtained thanks to a new and quite extended database of the in vivo absorption spectra of photosynthetic pigments (that is made available to the reader). The real part of the refractive index is then calculated by using the singly subtractive Kramers–Krönig approximation, for which the anchor point is determined with the Bruggeman mixing rule, based on the volume fraction of the microorganism internal-structures and their refractive indices (extracted from a database). Afterwards, the radiative properties are estimated using the Schiff approximation for spheroidal or cylindrical particles, as a first step toward the description of the complexity and diversity of the shapes encountered within the microbial world. Finally, these predictive results are confronted to experimental normal-hemispherical transmittance spectra for validation. This entire procedure is implemented for Rhodospirillum rubrum, Arthrospira platensis and Chlamydomonas reinhardtii, each representative of the main three kinds of photosynthetic microorganisms, i.e. respectively

Calculation of the radiative properties of photosynthetic microorganisms

Science.gov (United States)

Dauchet, Jérémi; Blanco, Stéphane; Cornet, Jean-François; Fournier, Richard

2015-08-01

A generic methodological chain for the predictive calculation of the light-scattering and absorption properties of photosynthetic microorganisms within the visible spectrum is presented here. This methodology has been developed in order to provide the radiative properties needed for the analysis of radiative transfer within photobioreactor processes, with a view to enable their optimization for large-scale sustainable production of chemicals for energy and chemistry. It gathers an electromagnetic model of light-particle interaction along with detailed and validated protocols for the determination of input parameters: morphological and structural characteristics of the studied microorganisms as well as their photosynthetic-pigment content. The microorganisms are described as homogeneous equivalent-particles whose shape and size distribution is characterized by image analysis. The imaginary part of their refractive index is obtained thanks to a new and quite extended database of the in vivo absorption spectra of photosynthetic pigments (that is made available to the reader). The real part of the refractive index is then calculated by using the singly subtractive Kramers-Krönig approximation, for which the anchor point is determined with the Bruggeman mixing rule, based on the volume fraction of the microorganism internal-structures and their refractive indices (extracted from a database). Afterwards, the radiative properties are estimated using the Schiff approximation for spheroidal or cylindrical particles, as a first step toward the description of the complexity and diversity of the shapes encountered within the microbial world. Finally, these predictive results are confronted to experimental normal-hemispherical transmittance spectra for validation. This entire procedure is implemented for Rhodospirillum rubrum, Arthrospira platensis and Chlamydomonas reinhardtii, each representative of the main three kinds of photosynthetic microorganisms, i.e. respectively

Use of specific microorganisms for in-situ sanitation of long-standing pollution sites. Final report

International Nuclear Information System (INIS)

Dengler, D.

1988-07-01

Laboratory and semi-industrial experiments were carried out in order to find out whether soils contaminated with mineral oil can be regenerated by stimulating microbial growth or by introducing additional oil-degrading microorganisms into the soil. In addition, methods were tested in which contaminants are wasted out with the aid of tensides. (orig.) [de

Advances in Rosetta structure prediction for difficult molecular-replacement problems

International Nuclear Information System (INIS)

DiMaio, Frank

2013-01-01

Modeling advances using Rosetta structure prediction to aid in solving difficult molecular-replacement problems are discussed. Recent work has shown the effectiveness of structure-prediction methods in solving difficult molecular-replacement problems. The Rosetta protein structure modeling suite can aid in the solution of difficult molecular-replacement problems using templates from 15 to 25% sequence identity; Rosetta refinement guided by noisy density has consistently led to solved structures where other methods fail. In this paper, an overview of the use of Rosetta for these difficult molecular-replacement problems is provided and new modeling developments that further improve model quality are described. Several variations to the method are introduced that significantly reduce the time needed to generate a model and the sampling required to improve the starting template. The improvements are benchmarked on a set of nine difficult cases and it is shown that this improved method obtains consistently better models in less running time. Finally, strategies for best using Rosetta to solve difficult molecular-replacement problems are presented and future directions for the role of structure-prediction methods in crystallography are discussed

Inquiry-Based Laboratory Activity to Investigate Physical Growth Requirements of Microorganisms

Directory of Open Access Journals (Sweden)

Michelle Furlong

2014-08-01

Full Text Available Standard "cookbook" laboratory activities that are used to teach students the optimal physical growth conditions of microorganisms should be modified so that they more effectively foster student's higher order cognitive skills and attract student interest.  This paper describes a laboratory activity that engages students in an inquiry-based approach to studying the physical growth requirements of microorganisms.  In this activity, students design and implement an experiment to obtain pure cultures of specific microorganisms, with distinct growth properties, that are provided to them in a mixed culture.

Microorganisms in food technology

Energy Technology Data Exchange (ETDEWEB)

Rose, A H

1981-11-01

Man has been using microorganisms for thousands of years to make bread, cheese, beer, wine, etc. Today, microorganisms can be specially grown or genetically manipulated so as to synthesize high-quality proteins even from low-grade basic materials.

Fossil Microorganisms in Archaean

Science.gov (United States)

Astafleva, Marina; Hoover, Richard; Rozanov, Alexei; Vrevskiy, A.

2006-01-01

Ancient Archean and Proterozoic rocks are the model objects for investigation of rocks comprising astromaterials. The first of Archean fossil microorganisms from Baltic shield have been reported at the last SPIE Conference in 2005. Since this confeence biomorphic structures have been revealed in Archean rocks of Karelia. It was determined that there are 3 types of such bion structures: 1. structures found in situ, in other words microorganisms even-aged with rock matrix, that is real Archean fossils biomorphic structures, that is to say forms inhabited early formed rocks, and 3. younger than Archean-Protherozoic minerali microorganisms, that is later contamination. We made attempt to differentiate these 3 types of findings and tried to understand of burial of microorganisms. The structures belongs (from our point of view) to the first type, or real Archean, forms were under examination. Practical investigation of ancient microorganisms from Green-Stone-Belt of Northern Karelia turns to be very perspective. It shows that even in such ancient time as Archean ancient diverse world existed. Moreover probably such relatively highly organized cyanobacteria and perhaps eukaryotic formes existed in Archean world.

Functional Basis of Microorganism Classification

Science.gov (United States)

Zhu, Chengsheng; Delmont, Tom O.; Vogel, Timothy M.; Bromberg, Yana

2015-01-01

Correctly identifying nearest “neighbors” of a given microorganism is important in industrial and clinical applications where close relationships imply similar treatment. Microbial classification based on similarity of physiological and genetic organism traits (polyphasic similarity) is experimentally difficult and, arguably, subjective. Evolutionary relatedness, inferred from phylogenetic markers, facilitates classification but does not guarantee functional identity between members of the same taxon or lack of similarity between different taxa. Using over thirteen hundred sequenced bacterial genomes, we built a novel function-based microorganism classification scheme, functional-repertoire similarity-based organism network (FuSiON; flattened to fusion). Our scheme is phenetic, based on a network of quantitatively defined organism relationships across the known prokaryotic space. It correlates significantly with the current taxonomy, but the observed discrepancies reveal both (1) the inconsistency of functional diversity levels among different taxa and (2) an (unsurprising) bias towards prioritizing, for classification purposes, relatively minor traits of particular interest to humans. Our dynamic network-based organism classification is independent of the arbitrary pairwise organism similarity cut-offs traditionally applied to establish taxonomic identity. Instead, it reveals natural, functionally defined organism groupings and is thus robust in handling organism diversity. Additionally, fusion can use organism meta-data to highlight the specific environmental factors that drive microbial diversification. Our approach provides a complementary view to cladistic assignments and holds important clues for further exploration of microbial lifestyles. Fusion is a more practical fit for biomedical, industrial, and ecological applications, as many of these rely on understanding the functional capabilities of the microbes in their environment and are less concerned

How Difficult It Is to Be God

DEFF Research Database (Denmark)

Wilson, Fiona

2014-01-01

Book review of Carlos Iván Degregori, How Difficult It Is to Be God: Shining Path's Politics of War in Peru,1980–1999 (Madison, WI: University of Wisconsin Press, 2012)......Book review of Carlos Iván Degregori, How Difficult It Is to Be God: Shining Path's Politics of War in Peru,1980–1999 (Madison, WI: University of Wisconsin Press, 2012)...

Comparisons of dioxin levels of cucumber varieties and cultivation periods

Energy Technology Data Exchange (ETDEWEB)

Eun, H.; Watanabe, E.; Ishii, Y.; Ueji, M. [National Inst. for Agro-Environmental Sciences, Tsukuba (Japan); Narita, I.; Nakamura, K. [Saitama Prefecture Agriculture and Forestry Research Center, Saitama (Japan)

2004-09-15

According to a 2001 survey on Daily Intake in Japan, the total dioxins intake of a person in Japan amounts to 1.68 pg-TEQ per kg of body weight/day on average. The sharing a percentage of agricultural crops was about 3%in Japanese TDI amounts. However, all cases collect samples from supermarkets to estimate TDI of dioxins, which make it difficult to understand under what environment, food samples were pretreated and cultivated. Especially, TDI values in agricultural crops are probably dependent on the collection situation. In the agricultural environment, some reports indicate that dioxins have accumulated in paddy and upland in Japan due to the past use of some types of agricultural chemicals, which contained dioxins as impurities. Furthermore, taking the atmospheric pathway, for example, dioxins in the ambient air are associated with particulate matter and fall to the ground, contaminating agricultural land. Thus, it has been emphasized that dioxin compounds have a possibility to have adverse effect on vegetables. However, there is little understanding related to this fact in the country and worldwide. Empirical studies conducted in Japan and abroad have reported low residual concentrations of dioxins in cucumbers (Cucumis sativus L.), a member of the gourd family. However, there have been extremely few instances of research involving overall comparisons of cultivation environments. Thus, we studied the persistence of dioxins in cucumbers of different varieties cultivated outdoors over varying cultivation periods, conducting thorough experiments to elucidate the actual conditions and mechanisms of dioxin contamination of cucumbers.

A guideline for comprehensive evaluation of a licensee's effort to cultivate safety culture

International Nuclear Information System (INIS)

Makino, Maomi; Ishii, Yoichi

2009-01-01

The nuclear industry in Japan had held excellent performance in safety in the world during 90's. However recent events stem from organizational factors and defects of safety culture are pointed out in their contexts. In order to reduce accidents caused by organizational factors, the Japanese Regulatory body NISA (Nuclear and Industrial Safety Agency) decided to evaluate a licensee's effort for the cultivation of safety culture, and to order all licensses to add the provision of cultivating safety culture to their safety preservation rules. The inspection for the new safety preservation rules started in December, 2007. For a measure of evaluation by resident inspectors, NISA and the Japan Nuclear Energy Safety Organization (JNES) prepared a guideline for the prevention of degradation of safety culture and organizational climate. In this guideline, 14 items were defined as the components of the safety culture or as the viewpoints to evaluate the effort made to prevent any degradation of safety culture and organizational climate in the daily safety preservation activities. The 14 items are also used to establish the method to comprehensively evaluate the effort to prevent degradation of safety culture and organizational climate. This method consists of 10 steps: two steps to taken prior to start of the evaluation, two steps to be taken during the evaluation period, 5 steps to be taken during a comprehensive evaluation period and a final step to be taken for comprehensive findings for safety culture. This paper mainly describes the viewpoints to evaluate comprehensively a licensee's effort for cultivation of safety culture. (author)

Final Reply to Hirsch.

Science.gov (United States)

Gerbner, George; And Others

1981-01-01

Replies to Paul Hirsch's rejoinder to Gerbner et al's findings on cultivation analysis. (See EJ 240 175-177.) Addresses the use of the National Opinion Research Center/ General Social Surveys. Concludes that Hirsch's appraisal of cultivation theory and his reasons for rejecting the concepts of mainstreaming and resonance are unwarranted and…

Physically Triggered Morphology Changes in a Novel Acremonium Isolate Cultivated in Precisely Engineered Microfabricated Environments

Directory of Open Access Journals (Sweden)

Laura Catón

2017-07-01

Full Text Available Fungi are strongly affected by their physical environment. Microfabrication offers the possibility of creating new culture environments and ecosystems with defined characteristics. Here, we report the isolation of a novel member of the fungal genus Acremonium using a microengineered cultivation chip. This isolate was unusual in that it organizes into macroscopic structures when initially cultivated within microwells with a porous aluminum oxide (PAO base. These “templated mycelial bundles” (TMB were formed from masses of parallel hyphae with side branching suppressed. TMB were highly hydrated, facilitating the passive movement of solutes along the bundle. By using a range of culture chips, it was deduced that the critical factors in triggering the TMB were growth in microwells from 50 to 300 μm in diameter with a PAO base. Cultivation experiments, using spores and pigments as tracking agents, indicate that bulk growth of the TMB occurs at the base. TMB morphology is highly coherent and is maintained after growing out of the microwells. TMB can explore their environment by developing unbundled lateral hyphae; TMB only followed if nutrients were available. Because of the ease of fabricating numerous microstructures, we suggest this is a productive approach for exploring morphology and growth in multicellular microorganisms and microbial communities.

LIHTC Difficult to Develop Areas

Data.gov (United States)

Department of Housing and Urban Development — A Difficult Development Area (DDA) for the Low Income Housing Tax Credit program is an area designated by the U.S. Department of Housing and Urban Development (HUD)...

Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota.

Science.gov (United States)

Gao, Weimin; Navarroli, Dena; Naimark, Jared; Zhang, Weiwen; Chao, Shih-Hui; Meldrum, Deirdre R

2013-01-09

The use of culture-independent nucleic acid techniques, such as ribosomal RNA gene cloning library analysis, has unveiled the tremendous microbial diversity that exists in natural environments. In sharp contrast to this great achievement is the current difficulty in cultivating the majority of bacterial species or phylotypes revealed by molecular approaches. Although recent new technologies such as metagenomics and metatranscriptomics can provide more functionality information about the microbial communities, it is still important to develop the capacity to isolate and cultivate individual microbial species or strains in order to gain a better understanding of microbial physiology and to apply isolates for various biotechnological applications. We have developed a new system to cultivate bacteria in an array of droplets. The key component of the system is the microbe observation and cultivation array (MOCA), which consists of a Petri dish that contains an array of droplets as cultivation chambers. MOCA exploits the dominance of surface tension in small amounts of liquid to spontaneously trap cells in well-defined droplets on hydrophilic patterns. During cultivation, the growth of the bacterial cells across the droplet array can be monitored using an automated microscope, which can produce a real-time record of the growth. When bacterial cells grow to a visible microcolony level in the system, they can be transferred using a micropipette for further cultivation or analysis. MOCA is a flexible system that is easy to set up, and provides the sensitivity to monitor growth of single bacterial cells. It is a cost-efficient technical platform for bioassay screening and for cultivation and isolation of bacteria from natural environments.

Hydroponic cultivation improves the nutritional quality of soybean and its products.

Science.gov (United States)

Palermo, Mariantonella; Paradiso, Roberta; De Pascale, Stefania; Fogliano, Vincenzo

2012-01-11

Hydroponic cultivation allows the control of environmental conditions, saves irrigation water, increases productivity, and prevents plant infections. The use of this technique for large commodities such as soybean is not a relevant issue on fertile soils, but hydroponic soybean cultivation could provide proteins and oil in adverse environmental conditions. In this paper, the compositions of four cultivars of soybean seeds and their derivates, soy milk and okara, grown hydroponically were compared to that of the same cultivar obtained from soil cultivation in an open field. Besides proximal composition, the concentrations of phytic acid and isoflavones were monitored in the seeds, soy milk, and okara. Results demonstrated that, independent from the cultivar, hydroponic compared to soil cultivation promoted the accumulation of fats (from 17.37 to 21.94 g/100 g dry matter) and total dietary fiber (from 21.67 to 28.46 g/100 g dry matter) and reduced isoflavones concentration (from 17.04 to 7.66 mg/kg dry matter), whereas protein concentration was unaffected. The differences found in seed composition were confirmed in the respective okara products, but the effect of cultivation system was not significant looking at the soy milk composition. Data showed that hydroponic cultivation improved the nutritional quality of soybean seeds with regard to fats and dietary fiber. They also suggest that specific cultivars should be selected to obtain the desired nutritional features of the soybean raw material depending on its final destination.

Contribution of soil esterase to biodegradation of aliphatic polyester agricultural mulch film in cultivated soils.

Science.gov (United States)

Yamamoto-Tamura, Kimiko; Hiradate, Syuntaro; Watanabe, Takashi; Koitabashi, Motoo; Sameshima-Yamashita, Yuka; Yarimizu, Tohru; Kitamoto, Hiroko

2015-01-01

The relationship between degradation speed of soil-buried biodegradable polyester film in a farmland and the characteristics of the predominant polyester-degrading soil microorganisms and enzymes were investigated to determine the BP-degrading ability of cultivated soils through characterization of the basal microbial activities and their transition in soils during BP film degradation. Degradation of poly(butylene succinate-co-adipate) (PBSA) film was evaluated in soil samples from different cultivated fields in Japan for 4 weeks. Both the degradation speed of the PBSA film and the esterase activity were found to be correlated with the ratio of colonies that produced clear zone on fungal minimum medium-agarose plate with emulsified PBSA to the total number colonies counted. Time-dependent change in viable counts of the PBSA-degrading fungi and esterase activities were monitored in soils where buried films showed the most and the least degree of degradation. During the degradation of PBSA film, the viable counts of the PBSA-degrading fungi and the esterase activities in soils, which adhered to the PBSA film, increased with time. The soil, where the film was degraded the fastest, recorded large PBSA-degrading fungal population and showed high esterase activity compared with the other soil samples throughout the incubation period. Meanwhile, esterase activity and viable counts of PBSA-degrading fungi were found to be stable in soils without PBSA film. These results suggest that the higher the distribution ratio of native PBSA-degrading fungi in the soil, the faster the film degradation is. This could be due to the rapid accumulation of secreted esterases in these soils.

[Dendrobium officinale stereoscopic cultivation method].

Science.gov (United States)

Si, Jin-Ping; Dong, Hong-Xiu; Liao, Xin-Yan; Zhu, Yu-Qiu; Li, Hui

2014-12-01

The study is aimed to make the most of available space of Dendrobium officinale cultivation facility, reveal the yield and functional components variation of stereoscopic cultivated D. officinale, and improve quality, yield and efficiency. The agronomic traits and yield variation of stereoscopic cultivated D. officinale were studied by operating field experiment. The content of polysaccharide and extractum were determined by using phenol-sulfuric acid method and 2010 edition of "Chinese Pharmacopoeia" Appendix X A. The results showed that the land utilization of stereoscopic cultivated D. officinale increased 2.74 times, the stems, leaves and their total fresh or dry weight in unit area of stereoscopic cultivated D. officinale were all heavier than those of the ground cultivated ones. There was no significant difference in polysaccharide content between stereoscopic cultivation and ground cultivation. But the extractum content and total content of polysaccharide and extractum were significantly higher than those of the ground cultivated ones. In additional, the polysaccharide content and total content of polysaccharide and extractum from the top two levels of stereoscopic culture matrix were significantly higher than that of the ones from the other levels and ground cultivation. Steroscopic cultivation can effectively improves the utilization of space and yield, while the total content of polysaccharides and extractum were significantly higher than that of the ground cultivated ones. The significant difference in Dendrobium polysaccharides among the plants from different height of stereo- scopic culture matrix may be associated with light factor.

Motivation of farmers to cultivate organic rice in Central Java

Science.gov (United States)

Dalmiyatun, T.; Eddy, B. T.; Sumekar, W.; Mardiningsih, D.

2018-01-01

The consumer’s need for organic agricultural products increases sharply along with awareness of health, lifestyle and environmental concern. This research was intended to determine the relationship between social factors and the motivation of farmers for cultivating organic rice in Central Java. The research has been done by survey to farmers groups at three regions i.e. Semarang, Sragen and Demak. The determination of the location was carried out by means of purposive i.e. farmer groups that conduct organic rice cultivation (not semi organic). The determination of the sample was conducted purposively for a number of 50 people each regencies. Data were analyzed descriptive analysis and rank Spearman correlation analysis. The results showed that social factors include age, cultivated area, education, farming experience have correlation with motivation. education and cultivated area of land has a fairly close relation with correlation value 0,463% and 0,242%. Based on the motivation level, 33% of farmers have high motivation, motivation of farmers varied but most of them, 54% of total farmers stated that the motivation to cultivate organic rice is the quality of organic rice products and high income.

Identification of cultivated land using remote sensing images based on object-oriented artificial bee colony algorithm

Science.gov (United States)

Li, Nan; Zhu, Xiufang

2017-04-01

Cultivated land resources is the key to ensure food security. Timely and accurate access to cultivated land information is conducive to a scientific planning of food production and management policies. The GaoFen 1 (GF-1) images have high spatial resolution and abundant texture information and thus can be used to identify fragmentized cultivated land. In this paper, an object-oriented artificial bee colony algorithm was proposed for extracting cultivated land from GF-1 images. Firstly, the GF-1 image was segmented by eCognition software and some samples from the segments were manually identified into 2 types (cultivated land and non-cultivated land). Secondly, the artificial bee colony (ABC) algorithm was used to search for classification rules based on the spectral and texture information extracted from the image objects. Finally, the extracted classification rules were used to identify the cultivated land area on the image. The experiment was carried out in Hongze area, Jiangsu Province using wide field-of-view sensor on the GF-1 satellite image. The total precision of classification result was 94.95%, and the precision of cultivated land was 92.85%. The results show that the object-oriented ABC algorithm can overcome the defect of insufficient spectral information in GF-1 images and obtain high precision in cultivated identification.

How to manage a child with difficult asthma?

Science.gov (United States)

Saglani, Sejal; Fleming, Louise

2016-08-01

Children with difficult asthma have significant morbidity and fail to achieve asthma control despite being prescribed high dose maintenance treatment. If control remains poor after diagnostic confirmation, detailed assessments of the reasons for asthma being difficult-to-control are needed. Underlying modifiable factors including non-adherence to medication, persistent environmental exposures that trigger asthma symptoms and psychosocial factors contribute to poor control in these patients. The focus of this review is to provide a practical approach to the diagnosis and management of difficult asthma including an overview of long term assessments to identify potential progression to true, severe asthma. A multi-disciplinary team is critical to enable modifiable factors to be identified and addressed. Significant resources are required to manage paediatric difficult asthma optimally and only specialist centres should be tasked with the assessment of these patients. Although this may have an impact on healthcare resources, long term benefits for lung health are significant. Expert commentary: The management of paediatric difficult asthma is not simple and involves numerous professionals with varied expertise. However, if it is not undertaken with the appropriate skills, there is a significant risk of children receiving inappropriate invasive investigations and therapies that will have no impact on morbidity.

Biodiversity, evolution and adaptation of cultivated crops.

Science.gov (United States)

Vigouroux, Yves; Barnaud, Adeline; Scarcelli, Nora; Thuillet, Anne-Céline

2011-05-01

The human diet depends on very few crops. Current diversity in these crops is the result of a long interaction between farmers and cultivated plants, and their environment. Man largely shaped crop biodiversity from the domestication period 12,000 B.P. to the development of improved varieties during the last century. We illustrate this process through a detailed analysis of the domestication and early diffusion of maize. In smallholder agricultural systems, farmers still have a major impact on crop diversity today. We review several examples of the major impact of man on current diversity. Finally, biodiversity is considered to be an asset for adaptation to current environmental changes. We describe the evolution of pearl millet in West Africa, where average rainfall has decreased over the last forty years. Diversity in cultivated varieties has certainly helped this crop to adapt to climate variation. Copyright © 2011 Académie des sciences. Published by Elsevier SAS. All rights reserved.

Identification of anaerobic microorganisms for converting kitchen waste to biogas

International Nuclear Information System (INIS)

Amirhossein Malakahmad; Shahrom Mohd Zain; Noor Ezlin Ahmad Basri; Shamsul Rahman Mohamed Kutty; Mohd Hasnain Isa

2010-01-01

Anaerobic digestion process is one of the alternative methods to convert organic waste into methane gas which is a fuel and energy source. Activities of various kinds of microorganisms are the main factor for anaerobic digestion which produces methane gas. Therefore, in this study a modified Anaerobic Baffled Reactor (ABR) with working volume of 50 liters was designed to identify the microorganisms through biogas production. The mixture of 75% kitchen waste and 25% sewage sludge was used as substrate. Observations on microorganisms in the ABR showed that there exists a small amount of protozoa (5%) and fungi (2%) in the system, but almost 93% of the microorganism population consists of bacteria. It is definitely clear that bacteria are responsible for anaerobic biodegradation of kitchen waste. Results show that in the acidification zone of the ABR (front compartments of reactor) fast growing bacteria capable of growth at high substrate levels and reduced pH was dominant. A shift to slower growing scavenging bacteria that grow better at higher pH was occurring towards the end of the reactor. Due to the ability of activity in acetate environment the percentages of Methanococcus, Methanosarcina and Methanotrix were higher than other kinds of methane former in the system. (Author)

Continuous cultivation of a thermophilic bacterium Aeribacillus pallidus 418 for production of an exopolysaccharide applicable in cosmetic creams.

Science.gov (United States)

Radchenkova, N; Panchev, I; Vassilev, S; Kuncheva, M; Dobreva, S; Kambourova, M

2015-11-01

The aim of this study was to evaluate the effectiveness of continuous cultivation approach for exopolysaccharide (EPS) production by a thermophilic micro-organism and the potential of the synthesized EPS for application in cosmetic industry. Study on the ability of Aeribacillus pallidus 418, isolated as a good EPS producer, to synthesize the polymer in continuous cultures showed higher production in comparison with batch cultures. The degree of the EPS in the precipitate after continuous cultivation significantly increased. Non-Newtonian pseudoplastic and thixotropic behaviour of EPS determines the ability of the received cream to become more fluid after increasing time of application on the skin. This study demonstrates a highly efficient way for production of EPS from a continuous growth culture of A. pallidus 418 that have many advantages and can outperform batch culture by eliminating time for cleaning and sterilization of the vessel and the comparatively long lag phases before the organisms enter a brief period of high productivity. The valuable physico-chemical properties of the synthesized EPS influenced positively the properties of a commercial cream. EPSs from thermophilic micro-organisms are of special interest due to the advantages of the thermophilic processes and nonpathogenic nature of the polymer molecules. However, their industrial application is hindered by the comparatively low biomass and correspondingly EPS yield. Suggested continuous approach for EPS could have an enormous economic potential for an industrial scale production of thermophilic EPSs. © 2015 The Society for Applied Microbiology.

Functional genes and thermophilic microorganisms responsible for arsenite oxidation from the shallow sediment of an untraversed hot spring outlet.

Science.gov (United States)

Yang, Ye; Mu, Yao; Zeng, Xian-Chun; Wu, Weiwei; Yuan, Jie; Liu, Yichen; Guoji, E; Luo, Feng; Chen, Xiaoming; Li, Hao; Wang, Jianing

2017-05-01

Hot Springs have unique geochemical features. Microorganisms-mediated arsenite oxidation is one of the major biogeochemical processes occurred in some hot springs. This study aimed to understand the diversities of genes and microorganisms involved in arsenite oxidation from the outlet of an untraversed hot spring located at an altitude of 4226 m. Microcosm assay indicated that the microbial community from the hot spring was able to efficiently oxidize As(III) using glucose, lactic acid, yeast extract or sodium bicarbonate as the sole carbon source. The microbial community contained 7 phyla of microorganisms, of which Proteobacteria and Firmicutes are largely dominant; this composition is unique and differs significantly from those of other described hot springs. Twenty one novel arsenite oxidase genes were identified from the samples, which are affiliated with the arsenite oxidase families of α-Proteobacteria, β-Proteobacteria or Archaea; this highlights the high diversity of the arsenite-oxidizing microorganisms from the hot spring. A cultivable arsenite-oxidizer Chelatococcu sp. GHS311 was also isolated from the sample using enrichment technique. It can completely convert 75.0 mg/L As(III) into As(V) in 18 days at 45 °C. The arsenite oxidase of GHS311 shares the maximal sequence identity (84.7%) to that of Hydrogenophaga sp. CL3, a non-thermotolerant bacterium. At the temperature lower than 30 °C or higher than 65 °C, the growth of this strain was completely inhibited. These data help us to better understand the diversity and functional features of the thermophilic arsenite-oxidizing microorganisms from hot springs.

Effects of Atrazine on Soil Microorganisms

Directory of Open Access Journals (Sweden)

Ljiljana Radivojević

2006-01-01

Full Text Available Effects of the herbicide atrazine on soil microorganisms was investigated. Trials were set up in laboratory, on a clay loam soil. Atrazine was applied at 8.0, 40.0 and 80.0 mg/kg soil rates. The abundance of total microorganisms, fungi, actinomycetes, cellulolytic microorganisms and amino-heterotrophs was recorded. Soil samples were collected 1, 7, 14, 21, 30 and 60 days after atrazine treatment for microbiological analyses.The results showed that the intensity of atrazine effect on soil microorganisms depended on treatment rate, exposure time and group of microorganisms. Atrazine had an inhibiting effect on cellulolytic microorganisms and amino-heterotrophs. Initially, it inhibited fungiand actinomycetes but its effect turned into a stimulating one once a population recovered. Atrazine had a stimulating effect on total abundance of microorganisms.

40 CFR 725.85 - Microorganism identity.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 30 2010-07-01 2010-07-01 false Microorganism identity. 725.85 Section... to Information § 725.85 Microorganism identity. (a) Claims applicable to the period prior to... specific microorganism identity at the time of submission of the information. This claim will apply only to...

Fiscal 1998 research report. Study on the feasibility of microorganism biotechnology for effective use of environmental pollutants. Pt. 2; 1998 nendochosa hokokusho. Kankyo osen busshitsu no shigenka no tame no biseibutsu bio technology riyo kanosei ni kansuru chosa. 2

Energy Technology Data Exchange (ETDEWEB)

NONE

1996-03-01

Study was made on the feasibility of microorganism biotechnology for effective use of environmental pollutants and unused resources. Microorganisms and microorganism enzymes for decomposing lignocellulose were viewed, and uses of hydrolysis products were summarized. Production of microorganisms applicable to fodder, composting, and production of energy sources (methane, hydrogen, ethanol) were studied. Use of vegetable fiber residues such as beer lees as fungus cultivation medium and conversion to valuable substances were also studied. Microorganisms treatment (MT) of wastes in fats and oils industry was summarized. Effective use of MT of protein waste from marine products was studied. MT of manures with the greatest impact on environment as livestock waste was summarized. The necessity of separate collection of domestic wastes, and composting and methane fermentation of kitchen garbage were reported. The feasibility of MT of plastic wastes, and decomposition of halogenated methane with high toxicity were also studied. (NEDO)

Fungal cultivation on glass-beads

DEFF Research Database (Denmark)

Droce, Aida; Sørensen, Jens Laurids; Giese, Henriette

Transcription of various bioactive compounds and enzymes are dependent on fungal cultivation method. In this study we cultivate Fusarium graminearum and Fusarium solani on glass-beads with liquid media in petri dishes as an easy and inexpensive cultivation method, that resembles in secondary...... metabolite production to agar-cultivation but with an easier and more pure RNA-extraction of total fungal mycelia....

Radioresistant microorganisms and food irradiation

Energy Technology Data Exchange (ETDEWEB)

Ito, H [Japan Atomic Energy Research Inst., Takasaki, Gunma. Takasaki Radiation Chemistry Research Establishment

1976-01-01

This paper deals with Micrococcus radiodurans, Arthrobacter radiotolerance, etc., which were isolated and discovered as radioresistant microorganisms. As for the explanation of the mechanism of radioresistance of these microorganisms, the consideration that these organisms have marked repair power of the damaged DNA and have many opportunity to repair the damaged DNA because of their long fission term were cited. The relationship between the radioresistance of microorganisms and food irradiation was also mentioned.

Cultivation and Stimulation of the English Learning Motivation

Institute of Scientific and Technical Information of China (English)

马茹

2014-01-01

In recent years, more and more researches show that we should pay more attention to students to play a main role in English study, because students who get the final effect on English learning motivation play central role in numerous students' learning affected factors. Therefore, in the education teaching activities, many teachers regard learning motivation of English effect as important aspect and use it in teaching through different ways and methods to cultivate and motivate students to learn English motivation. According to the definition of learning motivation,combined with the modern middle school students’English study, such as, the current situation of teachers' teaching, the actual situation of the relationship between teach-ers and students to talk about encouraging and educating high school students in English learning motivation by means and methods, in order to culti-vate and stimulate students`English learning motivation and improve English teaching level.

Biosurfactants from marine microorganisms

Directory of Open Access Journals (Sweden)

Suppasil Maneerat

2005-11-01

Full Text Available Biosurfactants are the surface-active molecules synthesized by microorganisms. With the advantage of environmental compatibility, the demand for biosurfactants has been steadily increasing and may eventually replace their chemically synthesized counterparts. Marine biosurfactants produced by some marine microorganisms have been paid more attention, particularly for the bioremediation of the sea polluted by crude oil. This review describes screening of biosurfactant-producing microorganisms, the determination of biosurfactant activity as well as the recovery of marine surfactant. The uses of marine biosurfactants for bioremediation are also discussed.

The complexity of wine: clarifying the role of microorganisms.

Science.gov (United States)

Tempère, Sophie; Marchal, Axel; Barbe, Jean-Christophe; Bely, Marina; Masneuf-Pomarede, Isabelle; Marullo, Philippe; Albertin, Warren

2018-05-01

The concept of wine complexity has gained considerable interest in recent years, both for wine consumers and wine scientists. As a consequence, some research programs concentrate on the factors that could improve the perceived complexity of a wine. Notably, the possible influence of microbiological factors is particularly investigated. However, wine complexity is a multicomponent concept not easily defined. In this review, we first describe the actual knowledge regarding wine complexity, its perception, and wine chemical composition. In particular, we emphasize that, contrary to expectations, the perception of wine complexity is not related to wine chemical complexity. Then, we review the impact of wine microorganisms on wine complexity, with a specific focus on publications including sensory analyses. While microorganisms definitively can impact wine complexity, the underlying mechanisms and molecules are far from being deciphered. Finally, we discuss some prospective research fields that will help improving our understanding of wine complexity, including perceptive interactions, microbial interactions, and other challenging phenomena.

Cultivation of the photosynthesis microorganism in a Taylor-Couette Vortex Flow with a small aspect ratio

Science.gov (United States)

Kawai, H.; Yasui, S.; Takahashi, H.; Kikura, H.; Aritomi, M.

2009-02-01

This study focuses on the dynamics of the Taylor-Couette Vortex Flow (TVF) in a photo-bioreactor in which CO2 is changed to O2 with high efficiency by the photosynthesis ability of micro algae. Stirring by means of a screw propeller is generally used for a simple agitation. However, the problem is that there exists a very high shearing flow region just near the propeller, which causes the destruction of the alga cell by the shearing force. In contrast, the TVF mixing is expected to reduce such a local and random shearing force because of their column of steady and orderly vortices. In this study, the relationship between the microorganism growth rate and the flow structures in dilute suspensions of a TVF is investigated and the flow characteristics are measured by using an ultrasonic velocity profiler with a small aspect ratio of 3.

Cultivation of the photosynthesis microorganism in a Taylor-Couette Vortex Flow with a small aspect ratio

International Nuclear Information System (INIS)

Kawai, H; Yasui, S; Takahashi, H; Kikura, H; Aritomi, M

2009-01-01

This study focuses on the dynamics of the Taylor-Couette Vortex Flow (TVF) in a photo-bioreactor in which CO 2 is changed to O 2 with high efficiency by the photosynthesis ability of micro algae. Stirring by means of a screw propeller is generally used for a simple agitation. However, the problem is that there exists a very high shearing flow region just near the propeller, which causes the destruction of the alga cell by the shearing force. In contrast, the TVF mixing is expected to reduce such a local and random shearing force because of their column of steady and orderly vortices. In this study, the relationship between the microorganism growth rate and the flow structures in dilute suspensions of a TVF is investigated and the flow characteristics are measured by using an ultrasonic velocity profiler with a small aspect ratio of 3.

Restoration potential of sedge meadows in hand-cultivated soybean fields in northeastern China

Science.gov (United States)

Wang, Guodong; Middleton, Beth; Jiang, Ming

2013-01-01

Sedge meadows can be difficult to restore from farmed fields if key structural dominants are missing from propagule banks. In hand-cultivated soybean fields in northeastern China, we asked if tussock-forming Carex and other wetland species were present as seed or asexual propagules. In the Sanjiang Plain, China, we compared the seed banks, vegetative propagules (below-ground) and standing vegetation of natural and restored sedge meadows, and hand-cultivated soybean fields in drained and flooded conditions. We found that important wetland species survived cultivation as seeds for some time (e.g. Calamogrostis angustifolia and Potamogeton crispus) and as field weeds (e.g. C. angustifolia and Phragmites australis). Key structural species were missing in these fields, for example, Carex meyeriana. We also observed that sedge meadows restored without planting or seeding lacked tussock-forming sedges. The structure of the seed bank was related to experimental water regime, and field environments of tussock height, thatch depth, and presence of burning as based on Nonmetric Multidimensional Scaling analysis. To re-establish the structure imposed by tussock sedges, specific technologies might be developed to encourage the development of tussocks in restored sedge meadows.

How to Cultivate the Student's Cultural Awareness

Institute of Scientific and Technical Information of China (English)

tian xiu ying

2008-01-01

Language and culture are inseparable and cultural awareness must be integrated with language teaching. How to cultivate the learners' cultural awareness is an important issue that we have to carry out in teaching practice in China.

Combination of microbiological culture and multiplex PCR increases the range of vaginal microorganisms identified in cervical cancer patients at high risk for bacterial vaginosis and vaginitis.

Science.gov (United States)

Schmidt, Katarzyna; Cybulski, Zefiryn; Roszak, Andrzej; Grabiec, Alicja; Talaga, Zofia; Urbański, Bartosz; Odważna, Joanna; Wojciechowicz, Jacek

2015-05-01

Bacterial vaginosis (BV) and vaginitis in cervical cancer patients might becaused by mixed aerobic, anaerobic, and atypical bacteria. Since genital tract infections can be complicated, early and accurate identification of causal pathogens is vital. The purpose of this study was i) to determinate if currently used aerobic culture methods are sufficiently sensitive to identify pathogens that can appear in the cervix of women after cancer treatment; ii) to investigate if molecular methods can improve the diagnostic process of BV and vaginitis, as well as broaden the range of detectable pathogens that would otherwise be difficult to cultivate. A one-year hospital-based study was conducted in 2011/2012. Cervical swabs from 130 patients were examined by microbiological culture and multiplex PCR. Swab samples were positive for 107 and 93 women by microbiological culture and multiplex PCR, respectively The most common bacteria isolated from culture were: Escherichia coli, Enterococcus faecalis, Streptococcus agalactiae, and Staphylococcus aureus, and using the molecular technique were: Gardnerella vaginalis, Bacteroides fragilis, Ureoplasma ureoliticum/parvum, Mobiluncus curtisii and Atopobium vaginae. Multiplex PCR might contribute to the diagnosis of genital tract infections and it broadens the number of detectable microorganisms responsible for BV. Combination of these two methods may become the basis for standardized diagnosis of BV and vaginitis.

Chemosensing in microorganisms to practical biosensors

OpenAIRE

Ghosh, Surya K.; Kundu, Tapanendu; Sain, Anirban

2012-01-01

Microorganisms like bacteria can sense concentration of chemo-attractants in its medium very accurately. They achieve this through interaction between the receptors on their cell surface and the chemo-attractant molecules (like sugar). But the physical processes like diffusion set some limits on the accuracy of detection which was discussed by Berg and Purcell in the late seventies. We have a re-look at their work in order to assess what insight it may offer towards making efficient, practica...

Financial assessment of oil palm cultivation on peatland in Selangor, Malaysia

Directory of Open Access Journals (Sweden)

M.N. Noormahayu

2009-02-01

Full Text Available Oil palm plantations on peat soils are generally believed to have greater environmental impacts than those on other soil types. Nonetheless, Malaysia operates substantial incentives to maximise palm oil production, which in practice encourage the establishment of plantations on peatland. This paper explores the social and economic basis of oil palm cultivation on one peatland estate at Sungai Panjang in the state of Selangor, peninsular Malaysia. Data were obtained by conducting a questionnaire survey of 200 farmers who cultivate oil palm on peat soil. Some of the data were cross-tabulated against farmers’ ages in order to identify any age-related trends in education level, the area of land farmed, annual income and knowledge about oil palm cultivation. The Cobb-Douglas production function was used to model the financial output from oil palm in terms of the costs of chemical inputs and labour. The results indicated that cultivation of this crop gives decreasing returns to scale on peatland in Sungai Panjang, and that chemical inputs are more important than labour cost in determining the level of financial output. Finally, the financial viability of oil palm cultivation for farmers was assessed by calculating three financial indicators (NPV, BCR and IRR. This can be a profitable investment so long as growth conditions, costs, selling price and interest rate do not fluctuate substantially. Greater annual returns can be achieved over 20–25 years than over shorter periods, especially of less than 10 years.

Experimental modeling of aerosols produced by microorganisms in working area air as risk factor exerting hazardous impacts on health of workers employed at biotechnological production

Directory of Open Access Journals (Sweden)

N.V. Dudchik

2017-09-01

Full Text Available Scientific foundation and practices in the sphere of hygienic and ecological standardization concerning biological factors of the environment have a number of peculiarities and are methodically less developed than chemical factors standardization. Efficient industrial control over maximum permissible concentrations of standardized microorganisms-producers in working area air is based on validated instrumental techniques of quantitative assessment. Our goal was to create experimental models for microorganisms-producers' aerosols of a multi-component microbe specimen in working area air as a risk factor causing impacts on health of workers employed at biotechnological production; another task was to work out a procedure for measuring Pseudomonas aurantiaca B-162/255.17concentration and cells and spores of Bacillus sp. BB58-3 strain in working area air. We gave grounds for a technology aimed at quantitative determination of microorganisms-producers in working area air in a modeling experiment; it was based on conventional stages and tech-niques accepted in microbiological practices, namely air samples taking via aspiration technique allowing for a volume taken; cultivation under conditions which are optimal for examined microorganisms-producers in a nutrient medium with reduced composition; calculation of evolved colonies with specific morphological features; morphologic identification of microorganisms and colonies; calculation of microorganisms' quantity on dishes with recalculation per 1 m3 of air. Bas-ing on the detected regular concentration dependences of microbe contamination dynamics in air we worked out a proce-dure for quantitative determination of microorganisms-producers; we also performed metrological estimate of opera-tional properties for assessing microorganisms-producers of a multi-component microbe specimen as a risk factor caus-ing hazardous impacts on health of workers employed at biotechnological production. We validated our

[Effects of copper on biodegradation mechanism of trichloroethylene by mixed microorganisms].

Science.gov (United States)

Gao, Yanhui; Zhao, Tiantao; Xing, Zhilin; He, Zhi; Zhang, Lijie; Peng, Xuya

2016-05-25

We isolated and enriched mixed microorganisms SWA1 from landfill cover soils supplemented with trichloroethylene (TCE). The microbial mixture could degrade TCE effectively under aerobic conditions. Then, we investigated the effect of copper ion (0 to 15 μmol/L) on TCE biodegradation. Results show that the maximum TCE degradation speed was 29.60 nmol/min with 95.75% degradation when copper ion was at 0.03 μmol/L. In addition, genes encoding key enzymes during biodegradation were analyzed by Real-time quantitative reverse transcription PCR (RT-qPCR). The relative expression abundance of pmoA gene (4.22E-03) and mmoX gene (9.30E-06) was the highest when copper ion was at 0.03 μmol/L. Finally, we also used MiSeq pyrosequencing to investigate the diversity of microbial community. Methylocystaceae that can co-metabolic degrade TCE were the dominant microorganisms; other microorganisms with the function of direct oxidation of TCE were also included in SWA1 and the microbial diversity decreased significantly along with increasing of copper ion concentration. Based on the above results, variation of copper ion concentration affected the composition of SWA1 and degradation mechanism of TCE. The degradation mechanism of TCE included co-metabolism degradation of methanotrophs and oxidation metabolism directly at copper ion of 0.03 μmol/L. When copper ion at 5 μmol/L (biodegradation was 84.75%), the degradation mechanism of TCE included direct-degradation and co-metabolism degradation of methanotrophs and microorganisms containing phenol hydroxylase. Therefore, biodegradation of TCE by microorganisms was a complicated process, the degradation mechanism included co-metabolism degradation of methanotrophs and bio-oxidation of non-methanotrophs.

Diversity of cultivable bacteria involved in the formation of macroscopic microbial colonies (Cave silver on the walls of a cave in Slovenia

Directory of Open Access Journals (Sweden)

Blagajana Herzog Velikonja

2014-01-01

Full Text Available Karstic caves often support white, yellow, grey or pink microbial colonies that are termed ‘cave silver’ by speleologists. Using various sample pre-treatments and culture media, a wide variety of bacteria associated with these colonies were recovered from a cave in Slovenia, Pajsarjeva jama. Decreasing the inoculum size resulted in significant increases in viable counts, while pre-treatments had the opposite effect with the exception of microwave irradiation. While all growth media yielded viable counts, the maximal counts were observed on a low-nutrient TWA medium. Based on the 16S rRNA gene sequence of OTU representatives, the majority of the 80 isolates examined belonged to Streptomyces (25%, Micrococcus (16% and Rhodococcus (10% Other abundant groups were Pseudomonas (9%, Agrobacterium (8%, Lysobacter (6% and Paenibacillus (5%, while members of genera Microbacterium, Agrococcus, Arthrobacter, Bacillus, Kocuria, Oerskovia, Sphingomonas, Aerococcus, and Bosea represented a minor portion of cultivable diversity encountered. Members of Streptomyces and Agrobacterium were common to all samples. Although these microorganisms readily form colonies under laboratory conditions, they were unrelated to abundant environmental phylotypes recovered from same samples in a previous study. However, the comparative 16S rRNA analysis showed that microorganisms highly related to the ones obtained in this study were cultivated from other subterranean environments indicating that they might represent true microbial cave dwellers.

Interactions Between Beneficial and Harmful Microorganisms: From the Composting Process to Compost Application

OpenAIRE

Fuchs, Jacques G.

2010-01-01

Numerous microorganisms are involved in the composting process, but their precise roles are often unknown. Compost microorganisms are influenced by the composition of the substrate and by the temperature in the compost pile. In addition, different microorganisms also influence each other, e.g. through competition. In the first phase of composting, microbial activity increase drastically, leading to a rise in temperature. The initial bacterial dominance is replaced by a fungal one during compo...

Effect of Azotobacter croococcum on productive traits and microorganisms in sugar beet rhizosphere

Directory of Open Access Journals (Sweden)

Kuzevski Janja

2011-01-01

Full Text Available The aim of this study was to determine the effects of three different inoculation methods with selected Azotobacter chroococcum strains on productive and technological traits of sugar beet, as well as on the total number of microorganisms and azotobacter in rhizosphere. The results of this two-year study showed that effectiveness of the tested inoculation methods in increasing root yield and sugar content varies greatly, depending on year and azotobacter strains. Effectiveness of inoculation methods was not largely impacted by year on granulated sugar. Achieved granulated sugar yield was significantly higher by using pre-sowing azotobacter application, than by using seed inoculation. A significantly increased number of microorganisms in sugar beet rhizosphere was determined, not only by using pre-sowing azotobacter application but also by using sugar beet seed inoculation. Pre-sowing azotobacter application and inter-row cultivation both caused an equal increase in the number of these bacteria in sugar beet rhizosphere (42.2% and 46.9%. Use of sugar beet seed inoculation caused an increase of 33.7% in the number of azotobacter. In order to achieve higher effectiveness in applying azotobacter on productive and technological traits of sugar beet, and considering determined interaction between a certain year, an inoculation method and a strain, it is necessary for future research to focus on determining efficiency of these strains when they are in a mixture.

Earthworm-microorganism interactions: a strategy to stabilize domestic wastewater sludge.

Science.gov (United States)

Zhao, Limin; Wang, Yayi; Yang, Jian; Xing, Meiyan; Li, Xiaowei; Yi, Danghao; Deng, Dehan

2010-04-01

The performance of a conventional biofilter (BF) and a vermifilter containing the earthworm, Eisenia foetida, (VF) for the treatment of domestic wastewater sludge were compared with the earthworm-microorganism interaction mechanisms involved in sludge stabilization. The results revealed that the presence of earthworms in the VF led to significant stabilization of the sludge by enhancing the reduction in volatile suspended solids (VSS) by 25.1%. Digestion by earthworms and the earthworm-microorganism interactions were responsible for 54% and 46% of this increase, respectively. Specifically, earthworms in the VF were capable of transforming insoluble organic materials to a soluble form and then selectively digesting the sludge particles of 10-200 microm to finer particles of 0-2 microm, which led to the further degradation of organic materials by the microorganisms in the reactor. Additionally, denaturing gradient gel electrophoresis (DGGE) profiles showed that there was an intensified bacterial diversity in the vermifilter due to the presence of earthworms, especially in response to the nutrients in their casts. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Different cultivation methods to acclimatise ammonia-tolerant methanogenic consortia.

Science.gov (United States)

Tian, Hailin; Fotidis, Ioannis A; Mancini, Enrico; Angelidaki, Irini

2017-05-01

Bioaugmentation with ammonia tolerant-methanogenic consortia was proposed as a solution to overcome ammonia inhibition during anaerobic digestion process recently. However, appropriate technology to generate ammonia tolerant methanogenic consortia is still lacking. In this study, three basic reactors (i.e. batch, fed-batch and continuous stirred-tank reactors (CSTR)) operated at mesophilic (37°C) and thermophilic (55°C) conditions were assessed, based on methane production efficiency, incubation time, TAN/FAN (total ammonium nitrogen/free ammonia nitrogen) levels and maximum methanogenic activity. Overall, fed-batch cultivation was clearly the most efficient method compared to batch and CSTR. Specifically, by saving incubation time up to 150%, fed-batch reactors were acclimatised to nearly 2-fold higher FAN levels with a 37%-153% methanogenic activity improvement, compared to batch method. Meanwhile, CSTR reactors were inhibited at lower ammonia levels. Finally, specific methanogenic activity test showed that hydrogenotrophic methanogens were more active than aceticlastic methanogens in all FAN levels above 540mgNH 3 -NL -1 . Copyright © 2017 Elsevier Ltd. All rights reserved.

Establishment and cultivation of the radiation safety culture

International Nuclear Information System (INIS)

Zhang Zhigang; Fan Yumao

2010-01-01

Safety culture is the cure of the corporate culture for nuclear technology application unit's. This article introduces the definition, connotation and levels of safety culture, and discusses the requirements of safety culture for organization and individuals in the area of technology application. Finally, key practical issues for the cultivation of safety culture are explained and some ideas about the construction of safety culture are proposed. (authors)

Cultivation, Genetic, Ethnopharmacology, Phytochemistry and Pharmacology of Moringa oleifera Leaves: An Overview.

Science.gov (United States)

Leone, Alessandro; Spada, Alberto; Battezzati, Alberto; Schiraldi, Alberto; Aristil, Junior; Bertoli, Simona

2015-06-05

Moringa oleifera is an interesting plant for its use in bioactive compounds. In this manuscript, we review studies concerning the cultivation and production of moringa along with genetic diversity among different accessions and populations. Different methods of propagation, establishment and cultivation are discussed. Moringa oleifera shows diversity in many characters and extensive morphological variability, which may provide a resource for its improvement. Great genetic variability is present in the natural and cultivated accessions, but no collection of cultivated and wild accessions currently exists. A germplasm bank encompassing the genetic variability present in Moringa is needed to perform breeding programmes and develop elite varieties adapted to local conditions. Alimentary and medicinal uses of moringa are reviewed, alongside the production of biodiesel. Finally, being that the leaves are the most used part of the plant, their contents in terms of bioactive compounds and their pharmacological properties are discussed. Many studies conducted on cell lines and animals seem concordant in their support for these properties. However, there are still too few studies on humans to recommend Moringa leaves as medication in the prevention or treatment of diseases. Therefore, further studies on humans are recommended.

Addition of waste and introduction of microorganisms after 45 years of soil degradation

Directory of Open Access Journals (Sweden)

Adriana Avelino Santos

Full Text Available ABSTRACT The construction of hydroelectric power plants (HPP may result in environmental problems, such as extensive areas of exposed subsoil and conditions of extreme degradation. These areas require alternative that minimize impact and allow partial recovery of their ecosystem functions and vegetation. This study aimed to evaluate the effects of residue addition (organic/macrophytes - OR and inorganic/ash - AR, hydrogel, and inoculation of microorganisms in degraded soil, cultivated with Jatropha curcas, through fertility and microbial activity. A conserved Cerrado ("savannah" soil was the source of microorganisms - mainly mycorrhizal fungi. The experiment was conducted for 12 months (during 2010/2011 at the farm of UNESP-School of Engineering/Campus of Ilha Solteira, Selvíria-MS, Brazil, installed in an area where the soil was degraded during the HPP construction, in the 1960s. The experimental design was complete randomized blocks, using a 2×2×4 factorial scheme, i.e., two inoculation treatments (with and without, two hydrogel treatments (with and without, and four residue treatments to introduce the J. curcas (OR, AR, OR + AR, and control without residues, with four replicates and five plants evaluated per replicate. The soil fertility analyses, quantification of microbial biomass carbon (MBC, and released C as CO2 (CO2-C, microbial quotient (qMic, and metabolic quotient (qCO2 were carried out 12 months after planting. The fertility positively responded to the addition of OR and OR + AR, with an increase in pH and SB and reduction in Al and H + Al. The inoculation of soil microorganisms associated with OR and OR + AR residue treatments raised the released CO2-C, MBC, and qMic. The addition of hydrogel combined with OR treatment contributed to the increase in the values of MBC and qMic.

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species.

Science.gov (United States)

Coleman-Derr, Devin; Desgarennes, Damaris; Fonseca-Garcia, Citlali; Gross, Stephen; Clingenpeel, Scott; Woyke, Tanja; North, Gretchen; Visel, Axel; Partida-Martinez, Laila P; Tringe, Susannah G

2016-01-01

Desert plants are hypothesized to survive the environmental stress inherent to these regions in part thanks to symbioses with microorganisms, and yet these microbial species, the communities they form, and the forces that influence them are poorly understood. Here we report the first comprehensive investigation of the microbial communities associated with species of Agave, which are native to semiarid and arid regions of Central and North America and are emerging as biofuel feedstocks. We examined prokaryotic and fungal communities in the rhizosphere, phyllosphere, leaf and root endosphere, as well as proximal and distal soil samples from cultivated and native agaves, through Illumina amplicon sequencing. Phylogenetic profiling revealed that the composition of prokaryotic communities was primarily determined by the plant compartment, whereas the composition of fungal communities was mainly influenced by the biogeography of the host species. Cultivated A. tequilana exhibited lower levels of prokaryotic diversity compared with native agaves, although no differences in microbial diversity were found in the endosphere. Agaves shared core prokaryotic and fungal taxa known to promote plant growth and confer tolerance to abiotic stress, which suggests common principles underpinning Agave-microbe interactions. No claim to US Government works. New Phytologist © 2015 New Phytologist Trust.

Formation of Guaiacol by Spoilage Bacteria from Vanillic Acid, a Product of Rice Koji Cultivation, in Japanese Sake Brewing.

Science.gov (United States)

Ito, Toshihiko; Konno, Mahito; Shimura, Yoichiro; Watanabe, Seiei; Takahashi, Hitoshi; Hashizume, Katsumi

2016-06-08

The formation of guaiacol, a potent phenolic off-odor compound in the Japanese sake brewing process, was investigated. Eight rice koji samples were analyzed, and one contained guaiacol and 4-vinylguaiacol (4-VG) at extraordinarily high levels: 374 and 2433 μg/kg dry mass koji, respectively. All samples contained ferulic and vanillic acids at concentrations of mg/kg dry mass koji. Guaiacol forming microorganisms were isolated from four rice koji samples. They were identified as Bacillus subtilis, B. amyloliquefaciens/subtilis, and Staphylococcus gallinarum using 16S rRNA gene sequence. These spoilage bacteria convert vanillic acid to guaiacol and ferulic acid to 4-VG. However, they convert very little ferulic acid or 4-VG to guaiacol. Nine strains of koji fungi tested produced vanillic acid at the mg/kg dry mass koji level after cultivation. These results indicated that spoilage bacteria form guaiacol from vanillic acid, which is a product of koji cultivation in the sake brewing process.

Microorganisms with a Taste for Vanilla: Microbial Ecology of Traditional Indonesian Vanilla Curing

Science.gov (United States)

Röling, Wilfred F. M.; Kerler, Josef; Braster, Martin; Apriyantono, Anton; Stam, Hein; van Verseveld, Henk W.

2001-01-01

The microbial ecology of traditional postharvesting processing of vanilla beans (curing) was examined using a polyphasic approach consisting of conventional cultivation, substrate utilization-based and molecular identification of isolates, and cultivation-independent community profiling by 16S ribosomal DNA based PCR-denaturing gradient gel electrophoresis. At two different locations, a batch of curing beans was monitored. In both batches a major shift in microbial communities occurred after short-term scalding of the beans in hot water. Fungi and yeast disappeared, although regrowth of fungi occurred in one batch during a period in which process conditions were temporarily not optimal. Conventional plating showed that microbial communities consisting of thermophilic and thermotolerant bacilli (mainly closely related to Bacillus subtilis, B. licheniformis,, and B. smithii) developed under the high temperatures (up to 65°C) that were maintained for over a week after scalding. Only small changes in the communities of culturable bacteria occurred after this period. Molecular analysis revealed that a proportion of the microbial communities could not be cultured on conventional agar medium, especially during the high-temperature period. Large differences between both batches were observed in the numbers of microorganisms, in species composition, and in the enzymatic abilities of isolated bacteria. These large differences indicate that the effects of microbial activities on the development of vanilla flavor could be different for each batch of cured vanilla beans. PMID:11319073

Biotechnological potential of Synechocystis salina co-cultures with selected microalgae and cyanobacteria: Nutrients removal, biomass and lipid production.

Science.gov (United States)

Gonçalves, Ana L; Pires, José C M; Simões, Manuel

2016-01-01

Cultivation of microalgae and cyanobacteria has been the focus of several research studies worldwide, due to the huge biotechnological potential of these photosynthetic microorganisms. However, production of these microorganisms is still not economically viable. One possible alternative to improve the economic feasibility of the process is the use of consortia between microalgae and/or cyanobacteria. In this study, Chlorella vulgaris, Pseudokirchneriella subcapitata and Microcystis aeruginosa were co-cultivated with Synechocystis salina to evaluate how dual-species cultures can influence biomass and lipid production and nutrients removal. Results have shown that the three studied consortia achieved higher biomass productivities than the individual cultures. Additionally, nitrogen and phosphorus consumption rates by the consortia provided final concentrations below the values established by European Union legislation for these nutrients. In the case of lipid productivities, higher values were determined when S. salina was co-cultivated with P. subcapitata and M. aeruginosa. Copyright © 2015 Elsevier Ltd. All rights reserved.

Microorganism identification technique using radioactive and fluorescent agent

International Nuclear Information System (INIS)

Silman, R.E.

1983-01-01

A method for identifying microorganisms is claimed. An emissive agent is added to a specimen of microorganisms to produce a mix of emissive products. These products are detected and characteristic pattern functioning as an identifier for the microorganisms is derived. The identifier is then compared with identifiers representing known microorganisms

Resistance of Microorganisms to Extreme Environmental Conditions and Its Contribution to Astrobiology

Directory of Open Access Journals (Sweden)

Pabulo Henrique Rampelotto

2010-06-01

Full Text Available In the last decades, substantial changes have occurred regarding what scientists consider the limits of habitable environmental conditions. For every extreme environmental condition investigated, a variety of microorganisms have shown that not only can they tolerate these conditions, but that they also often require these extreme conditions for survival. Microbes can return to life even after hundreds of millions of years. Furthermore, a variety of studies demonstrate that microorganisms can survive under extreme conditions, such as ultracentrifugation, hypervelocity, shock pressure, high temperature variations, vacuums, and different ultraviolet and ionizing radiation intensities, which simulate the conditions that microbes could experience during the ejection from one planet, the journey through space, as well as the impact in another planet. With these discoveries, our knowledge about the biosphere has grown and the putative boundaries of life have expanded. The present work examines the recent discoveries and the principal advances concerning the resistance of microorganisms to extreme environmental conditions, and analyzes its contributions to the development of the main themes of astrobiology: the origins of life, the search for extraterrestrial life, and the dispersion of life in the Universe.

Cellular viability of Saccharomyces cerevisiae cultivated in association with contaminates bacteria of alcoholic fermentation;Viabilidade celular de Saccharomyces cerevisiae cultivada em associacao com bacterias contaminantes da fermentacao alcoolica

Energy Technology Data Exchange (ETDEWEB)

Nobre, Thais de Paula

2005-07-01

The aim of this work was to study the influence of the bacteria Bacillus and Lactobacillus, as well as their metabolic products, in reduction of cellular viability of Saccharomyces cerevisiae, when in mixed culture of yeast and active and treated bacteria. Also was to evaluated an alternative medium (MCC) for the cultivation of bacteria and yeast, constituted of sugarcane juice diluted to 5 deg Brix and supplemented with yeast extract and peptone. The bacteria Bacillus subtilis, Bacillus coagulans, Bacillus stearothermophilus, Lactobacillus fermentum and Lactobacillus plantarum were cultivated in association with yeast Saccharomyces cerevisiae (strain Y-904) for 72 h on 32 deg C, under agitation. The cellular viability, budding rate and population of S. cerevisiae, the total acidity, volatile acidity and pH of culture were determined from 0, 24, 48 e 72 h of mixed culture. Also were determined the initial and final of microorganism population across the pour plate method, in traditional culture medium (PCA for Bacillus, MRS-agar for Lactobacillus and YEPD-agar for yeast S. cerevisiae) and in medium constituted of sugarcane juice. The bacteria cultures were treated by heat sterilization (120 deg C for 20 minutes), antibacterial agent (Kamoran HJ in concentration 3,0 ppm) or irradiation (radiation gamma, with doses of 5,0 kGy for Lactobacillus and 15,0 kGy for Bacillus). The results of the present research showed that just the culture mediums more acids (with higher concentrations of total and volatile acidity, and smaller values of pH), contaminated with active bacteria L. fermentum and B. subtilis, caused reduction on yeast cellular viability. Except the bacteria B. subtilis treated with radiation, the others bacteria treated by different procedures (heat, radiation e antibacterial) did not cause reduction on yeast cellular viability and population, indicating that the isolated presence of the cellular metabolic of theses bacteria was not enough to reduce the

Using a medium of free amino acids to produce penicillin g acylase in fed-batch cultivations of Bacillus megaterium ATCC 14945

Directory of Open Access Journals (Sweden)

R. G. Silva

2006-03-01

Full Text Available The production of penicillin G acylase (PGA, an important industrial enzyme from a wild strain of Bacillus megaterium using a pool of free amino acids as substrate was studied in a bench-scale bioreactor. Experiments carried out in shakers showed that the substitution of casein for free amino acids in the presence of cheese whey was the culture medium that provided the highest productivity. Several cultivations were carried out in a bioreactor operated in either batch or fed-batch mode. Batch runs showed that enzyme production is associated with microorganism growth. The following set of amino acids was preferentially consumed: Ala, Arg, Asp, Gly, Lys, Ser, Thr and Trp. On the other hand, the rates of consumption of His, Ile, Leu, Met, Phe, Pro, Tyr and Val were lower.

Glass bead cultivation of fungi

DEFF Research Database (Denmark)

Droce, Aida; Sørensen, Jens Laurids; Giese, H.

2013-01-01

Production of bioactive compounds and enzymes from filamentous fungi is highly dependent on cultivation conditions. Here we present an easy way to cultivate filamentous fungi on glass beads that allow complete control of nutrient supply. Secondary metabolite production in Fusarium graminearum...... and Fusarium solani cultivated on agar plates, in shaking liquid culture or on glass beads was compared. Agar plate culture and glass bead cultivation yielded comparable results while liquid culture had lower production of secondary metabolites. RNA extraction from glass beads and liquid cultures was easier...... to specific nutrient factors. •Fungal growth on glass beads eases and improves fungal RNA extraction....

Soft power as part of China's strategy for national image cultivation

DEFF Research Database (Denmark)

Overgaard, Signe

In recent years soft power has become a key issue at the highest political level in China, focusing especially on cultural soft power. This is reflected in important political documents, such as five year plans, plenum meeting summaries, as well as speeches by Hu Jintao and other politicians...... at the highest level. This interest in soft power is generally seen as part of an important foreign policy shift, and the huge amounts of money spent by the government on cultural diplomacy testify to the importance attached to it. Understanding what might be the goal of China’s soft power strategy is however...... difficult. The question can be analysed from various perspectives focusing on the use of power, the peaceful development discourse, or national image cultivation, and finding a straight forward answer is therefore difficult. If we go deeper and see the soft power discourse in the context of the worries...

Ionic liquid-tolerant microorganisms and microbial communities for lignocellulose conversion to bioproducts.

Science.gov (United States)

Yu, Chaowei; Simmons, Blake A; Singer, Steven W; Thelen, Michael P; VanderGheynst, Jean S

2016-12-01

Chemical and physical pretreatment of biomass is a critical step in the conversion of lignocellulose to biofuels and bioproducts. Ionic liquid (IL) pretreatment has attracted significant attention due to the unique ability of certain ILs to solubilize some or all components of the plant cell wall. However, these ILs inhibit not only the enzyme activities but also the growth and productivity of microorganisms used in downstream hydrolysis and fermentation processes. While pretreated biomass can be washed to remove residual IL and reduce inhibition, extensive washing is costly and not feasible in large-scale processes. IL-tolerant microorganisms and microbial communities have been discovered from environmental samples and studies begun to elucidate mechanisms of IL tolerance. The discovery of IL tolerance in environmental microbial communities and individual microbes has lead to the proposal of molecular mechanisms of resistance. In this article, we review recent progress on discovering IL-tolerant microorganisms, identifying metabolic pathways and mechanisms of tolerance, and engineering microorganisms for IL tolerance. Research in these areas will yield new approaches to overcome inhibition in lignocellulosic biomass bioconversion processes and increase opportunities for the use of ILs in biomass pretreatment.

Contribution to interpretation of metal uptake dependence upon the growth phase of microorganisms. The case of uranium (VI) uptake by common yeasts, cultivated at different temperatures, with or without aeration

International Nuclear Information System (INIS)

Anagnostopoulos, V.A.; Symeopoulos, B.D.; Argyro Bekatorou

2011-01-01

The dependence of U(VI) uptake on the temperature of cell culture, the air flow during the cultivation process and the age of cells were studied. Saccharomyces cerevisiae, Kluyveromyces marxianus and Debaromyces hansenii were chosen as typical yeasts, which are widely used, in food industries. Our results revealed that the highest metal uptake was obtained from exponential phase cells, which had been cultivated at the optimum temperature of growth, while the air flow during the cultivation process, exhibited no significant effect on the metal uptake. A qualitative interpretation of bibliographic data, concerning the metal uptake on the age of cells is proposed, assuming that qualitative changes in the cell wall structure take place, as the cells pass from exponential to stationary phase, in addition to quantitative modifications, which have been reported in the literature. According to our interpretation, the relative abundances among quantitative and qualitative alterations of cell wall, determine which cells (exponential or stationary) exhibit the higher metal capacity. One type of the suggested qualitative modifications of surface constituent of cell wall, may have been caused by a shortening of a carboxylic acid carbon chain. This type of modification implies, as prerequisite, the decrease of pK a values of cell wall carboxyl groups, with the age of cells. An evidence, supporting our approach, may be the fact that the decrease of pK a values mentioned above, has been observed by other authors. (author)

Extracellular electron transfer mechanisms between microorganisms and minerals

Energy Technology Data Exchange (ETDEWEB)

Shi, Liang; Dong, Hailiang; Reguera, Gemma; Beyenal, Haluk; Lu, Anhuai; Liu, Juan; Yu, Han-Qing; Fredrickson, James K.

2016-08-30

Electrons can be transferred from microorganisms to multivalent metal ions that are associated with minerals and vice versa. As the microbial cell envelope is neither physically permeable to minerals nor electrically conductive, microorganisms have evolved strategies to exchange electrons with extracellular minerals. In this Review, we discuss the molecular mechanisms that underlie the ability of microorganisms to exchange electrons, such as c-type cytochromes and microbial nanowires, with extracellular minerals and with microorganisms of the same or different species. Microorganisms that have extracellular electron transfer capability can be used for biotechnological applications, including bioremediation, biomining and the production of biofuels and nanomaterials.

Emotional distance to so-called difficult patients

DEFF Research Database (Denmark)

Michaelsen, Jette Joost

2012-01-01

Scand J Caring Sci; 2011 Emotional distance to so-called difficult patients Purpose: To explore nurses' relationships with patients they regard as being difficult. How do nurses feel about such patients and relate to them, and what are the consequences for nurse and patient? Design and methods....... Patients' case records were studied and four meetings with the staff were arranged to discuss the findings. Data collection lasted 18 months in all. Findings: Three strategies were identified: persuasion, avoidance (emotional distance), and compromise. Interestingly, in the relationship with a particular...... patient, the avoidance strategy did not necessarily represent the terminal stage, since a nurse could revert to the compromise strategy. Some of the nurses experienced painful emotions regarding these interactions. Conclusions: The avoidance strategy (emotional distance) resulted in important social...

Comparison between cultivated and total bacterial communities associated with Cucurbita pepo using cultivation-dependent techniques and 454 pyrosequencing.

Science.gov (United States)

Eevers, N; Beckers, B; Op de Beeck, M; White, J C; Vangronsveld, J; Weyens, N

2016-02-01

Endophytic bacteria often have beneficial effects on their host plants that can be exploited for bioremediation applications but, according to the literature, only 0.001-1% of all endophytic microbes should be cultivable. This study compared the cultivated endophytic communities of the roots and shoots of Cucurbita pepo with the total endophytic communities as determined by cultivation-dependent techniques and 454 pyrosequencing. The ten most abundant taxa of the total communities aligned well with the cultivated taxa; however, the abundance of these taxa in the two communities differed greatly. Enterobacter showed very low presence in the total communities, whereas they were dominantly present in the cultivated communities. Although Rhizobium dominated in total root and shoot communities, it was poorly cultivable and even then only in growth media containing plant extract. Since endophytes likely contribute to plant-growth promotion, cultivated bacterial strains were tested for their plant-growth promoting capabilities, and the results were correlated with their abundance in the total community. Bacillus and Pseudomonas showed promising results when considering cultivability, abundance in the total community and plant-growth promoting capability. This study demonstrated that, although a limited number of bacterial genera were cultivable, current cultivation-dependent techniques may be sufficient for further isolation and inoculation experiments that aim to improve phytoremediation efficiency. Copyright © 2015 Elsevier GmbH. All rights reserved.

Large-scale production of diesel-like biofuels - process design as an inherent part of microorganism development.

Science.gov (United States)

Cuellar, Maria C; Heijnen, Joseph J; van der Wielen, Luuk A M

2013-06-01

Industrial biotechnology is playing an important role in the transition to a bio-based economy. Currently, however, industrial implementation is still modest, despite the advances made in microorganism development. Given that the fuels and commodity chemicals sectors are characterized by tight economic margins, we propose to address overall process design and efficiency at the start of bioprocess development. While current microorganism development is targeted at product formation and product yield, addressing process design at the start of bioprocess development means that microorganism selection can also be extended to other critical targets for process technology and process scale implementation, such as enhancing cell separation or increasing cell robustness at operating conditions that favor the overall process. In this paper we follow this approach for the microbial production of diesel-like biofuels. We review current microbial routes with both oleaginous and engineered microorganisms. For the routes leading to extracellular production, we identify the process conditions for large scale operation. The process conditions identified are finally translated to microorganism development targets. We show that microorganism development should be directed at anaerobic production, increasing robustness at extreme process conditions and tailoring cell surface properties. All the same time, novel process configurations integrating fermentation and product recovery, cell reuse and low-cost technologies for product separation are mandatory. This review provides a state-of-the-art summary of the latest challenges in large-scale production of diesel-like biofuels. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

[Cultivated keratinocytes on micro-carriers: in vitro studies of a new carrier system].

Science.gov (United States)

Hecht, J; Hoefter, E A; Hecht, J; Haraida, S; Nerlich, A; Hartinger, A; Mühlbauer, W; Dimoudis, N

1997-03-01

Epidermal grafts from confluently cultivated keratinocytes have been used since the early eighties for the treatment of severe burns, where the shortage of donor sites for split-thickness skin grafts did not allow for adequate wound coverage. The difficult handling of these grafts as well as the advanced differentiation of their epithelial cells into a multilayer sheet poses a problem for their clinical application. The aim of the study was to characterize cultivated keratinocytes, as well as to observe their migration and proliferation from the MC onto a surface. Keratinocytes were isolated from human foreskin and cultivated in serum-free and serum-containing medium according to a modified method by Rheinwald and Green. Collagen-coated Dextran beads were used as MC. The MC were colonized with keratinocytes using the Spinner culture technique. After seeding the colonized MC into culture flasks, their migration and proliferation was monitored regularly through immunohistochemical studies and measurement of the metabolic cell activity. Immunohistological staining proved that the cells isolated from human foreskin represent keratinocytes of the basal type. Keratinocytes, cultivated with serum-containing and serum free medium, both adhered to the surface of the MC, then migrated onto the surface of the flasks and proliferated to form a multilayer of epithelial cells. In the long-term, a flexible epithelial graft consisting of poorly differentiated keratinocytes should be available, which is simple to produce and easy to handle. This would be an alternative method for treating wounds, where the conventional multilayer epithelial graft (ET) is insufficient.

Analysis of structural chromosomal rearrangements in hematological neoplasias; Study of structural chromosomal rearrangements of cells of chronic lymphocytic leukemia after DSP30/IL2 stimulated cultivation

OpenAIRE

Hrubá, Martina

2014-01-01

Cytogenetic analysis of cells of chronic lymphocytic leukemia (CLL) is difficult because of their low proliferative activity. To obtain sufficient number of mitoses for performing chromosomal analysis a suitable stimulation of cell division is needed. Using DSP30/IL2 stimulated cultivation 391 CLL samples were investigated in 5 years' period. The cultivation was showed to have high success rate (96%; 375/391) with also high rate of detection of pathological clones by both karyotype and metaph...

Morphological Observations and Fatty Acid Composition of Indoor-Cultivated Cordyceps sinensis at a High-Altitude Laboratory on Sejila Mountain, Tibet

Science.gov (United States)

Guo, Lian-Xian; Xu, Xiao-Ming; Liang, Fu-Rui; Yuan, Jian-Ping; Peng, Juan; Wu, Chou-Fei; Wang, Jiang-Hai

2015-01-01

Cordyceps sinensis, a caterpillar entomopathogenic fungus-host larva complex, is a rare medicinal herb found in the Qinghai-Tibetan Plateau and its surrounding high-altitude areas. The alternation of generations in the life cycle, whatever the fungus or its host insect, requires special growth conditions. However, it is difficult to simulate the growth conditions of C. sinensis, which hinders its artificial cultivation. In this work, the life cycle from the host larva to C. sinensis was observed in an indoor-cultivation laboratory at 4,200 m a.s.l. on Sejila Mountain, Tibet. Comparative examinations between indoor-cultivated and wild C. sinensis demonstrated that the indoor-cultivated C. sinensis preferred to germinate multiple long, slim stromata at diverse positions on dead larvae, including but not limited to their heads. Their fatty acid composition shows a significant difference in the levels of polyunsaturated fatty acids (PUFAs). In indoor-cultivated C. sinensis, PUFAs constituted 24.59% and 49.43%, respectively, of neutral and polar lipids; meanwhile, in wild C. sinensis, PUFAs represented 34.34% and 61.25% of neutral and polar lipids, respectively. These observations and fatty acid data suggest that environmental factors, particularly temperature, soil pressure and light intensity, strongly affect the growth of C. sinensis. Our new findings may provide important information for improving techniques for the large-scale artificial cultivation of C. sinensis. PMID:25938484

Necromass as a source of energy to microorganisms in marine sediments.

Science.gov (United States)

Bradley, J.; Amend, J.; LaRowe, D.

2017-12-01

Marine sediments constitute one of the largest, most energy-limited biospheres on Earth. Despite increasing exploration and interest characterizing microbial communities in marine sediments, the production and role of microbial dead-matter (necromass) has largely been overlooked. Necromass is produced on a global scale, yet its significance as a power source to heterotrophic microorganisms remains unknown. We developed a physical, bio-energetic and geochemical model to quantify the total power supply from necromass oxidation and the total power demand of living microorganisms in marine sediments. This model is first applied to sediments from the oligotrophic South Pacific Gyre (SPG), where organic carbon and biomass concentrations are extremely low, yet microorganisms persist for millions of years in some of the lowest energy states on Earth. We show that necromass does not supply sufficient power to support the total demands of the living community (maintenance demands of microorganisms in marine sediments for up to 60,000 years following burial. Our model assumes that all counted cells are viable. Yet, if only a fraction of counted cells are alive, the role of necromass as an electron donor in fueling microbial metabolisms is even greater. This new insight requires a reassessment of carbon fluxes in the deep biosphere. By extension, we also demonstrate a mechanism for microbial communities to persist by oxidizing necromass over geological timescales, and thereby endure unfavorable, low-energy settings that might be analogous to conditions on early Earth and on other planetary bodies.

Corrosion of low carbon steel by microorganisms from the 'pigging' operation debris in water injection pipelines.

Science.gov (United States)

Cote, Claudia; Rosas, Omar; Sztyler, Magdalena; Doma, Jemimah; Beech, Iwona; Basseguy, Régine

2014-06-01

Present in all environments, microorganisms develop biofilms adjacent to the metallic structures creating corrosion conditions which may cause production failures that are of great economic impact to the industry. The most common practice in the oil and gas industry to annihilate these biofilms is the mechanical cleaning known as "pigging". In the present work, microorganisms from the "pigging" operation debris are tested biologically and electrochemically to analyse their effect on the corrosion of carbon steel. Results in the presence of bacteria display the formation of black corrosion products allegedly FeS and a sudden increase (more than 400mV) of the corrosion potential of electrode immersed in artificial seawater or in field water (produced water mixed with aquifer seawater). Impedance tests provided information about the mechanisms of the interface carbon steel/bacteria depending on the medium used: mass transfer limitation in artificial seawater was observed whereas that in field water was only charge transfer phenomenon. Denaturing Gradient Gel Electrophoresis (DGGE) results proved that bacterial diversity decreased when cultivating the debris in the media used and suggested that the bacteria involved in the whole set of results are mainly sulphate reducing bacteria (SRB) and some other bacteria that make part of the taxonomic order Clostridiales. Copyright © 2013 Elsevier B.V. All rights reserved.

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

Science.gov (United States)

Vishnivetskaya, Tatiana A; Hamilton-Brehm, Scott D; Podar, Mircea; Mosher, Jennifer J; Palumbo, Anthony V; Phelps, Tommy J; Keller, Martin; Elkins, James G

2015-02-01

The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (65 °C) temperatures.

Cultivating Visionary Leaders to Transform Our World

Science.gov (United States)

Coers, Natalie J.

2018-01-01

Vision has long been a quality and characteristic defining leadership. To cultivate vision among undergraduate students in a course, the United Nations' Sustainable Development Goals are utilized as a foundation to inspire a vision that connects local service and personal interests to global, complex issues. Students select a goal to work with for…

NASA Applied Sciences' DEVELOP National Program: a unique model cultivating capacity in the geosciences

Science.gov (United States)

Ross, K. W.; Favors, J. E.; Childs-Gleason, L. M.; Ruiz, M. L.; Rogers, L.; Allsbrook, K. N.

2013-12-01

The NASA DEVELOP National Program takes a unique approach to cultivating the next generation of geoscientists through interdisciplinary research projects that address environmental and public policy issues through the application of NASA Earth observations. Competitively selected teams of students, recent graduates, and early career professionals take ownership of project proposals outlining basic application concepts and have ten weeks to research core scientific challenges, engage partners and end-users, demonstrate prototypical solutions, and finalize and document their results and outcomes. In this high pressure, results-driven environment emerging geoscience professionals build strong networks, hone effective communication skills, and learn how to call on the varied strengths of a multidisciplinary team to achieve difficult objectives. The DEVELOP approach to workforce development has a variety of advantages over classic apprenticeship-style internship systems. Foremost is the experiential learning of grappling with real-world applied science challenges as a primary actor instead of as an observer or minor player. DEVELOP participants gain experience that fosters personal strengths and service to others, promoting a balance of leadership and teamwork in order to successfully address community needs. The program also advances understanding of Earth science data and technology amongst participants and partner organizations to cultivate skills in managing schedules, risks and resources to best optimize outcomes. Individuals who come through the program gain experience and networking opportunities working within NASA and partner organizations that other internship and academic activities cannot replicate providing not only skill development but an introduction to future STEM-related career paths. With the competitive nature and growing societal role of science and technology in today's global community, DEVELOP fosters collaboration and advances environmental

Methodology to evaluate the impact of the erosion in cultivated floors applying the technique of the 137CS

International Nuclear Information System (INIS)

Gil Castillo, R.; Peralta Vital, J.L.; Carrazana, J.; Riverol, M.; Penn, F.; Cabrera, E.

2004-01-01

The present paper shows the results obtained in the framework of 2 Nuclear Projects, in the topic of application of nuclear techniques to evaluate the erosion rates in cultivated soils. Taking into account the investigations with the 137 CS technique, carried out in the Province of Pinar del Rio, was obtained and validated (first time) a methodology to evaluate the erosion impact in a cropland. The obtained methodology includes all relevant stages for the adequate application of the 137 CS technique, from the initial step of area selection, the soil sampling process, selection of the models and finally, the results evaluation step. During the methodology validation process in soils of the Municipality of San Juan y Martinez, the erosion rates estimated by the methodology and the obtained values by watershed segment measures (traditional technique) were compared in a successful manner. The methodology is a technical guide, for the adequate application of the 137 CS technique to estimate the soil redistribution rates in cultivated soils

Bioprospection of marine microorganisms: biotechnological applications and methods

Directory of Open Access Journals (Sweden)

Hebe M Dionisi

2012-03-01

Full Text Available Environmental microorganisms constitute an almost inexhaustible reserve of genetic and functional diversity, accumulated during millions of years of adaptive evolution to various selective pressures. In particular, the extent of microbial biodiversity in marine habitats seems to grow larger as new techniques emerge to measure it. This has resulted in novel and more complex approaches for the screening of molecules and activities of biotechnological interest in these environments. In this review, we explore the different partially overlapping biotechnological fields that make use of microorganisms and we describe the different marine habitats that are particularly attractive for bioprospection. In addition, we review the methodological approaches currently used for microbial bioprospection, from the traditional cultivation techniques to state of the art metagenomic approaches, with emphasis in the marine environment.Bioprospección de microorganismos marinos: aplicaciones biotecnológicas y métodos. Los microorganismos ambientales constituyen una reserva prácticamente inagotable de diversidad genética, acumulada durante millones de años de evolución adaptativa a varias presiones selectivas. En particular, la magnitud de la biodiversidad microbiana en hábitats marinos parece crecer al emerger nuevas técnicas para medirla. Como resultado, se han comenzado a utilizar enfoques novedosos y más complejos para la búsqueda de moléculas y actividades de interés biotecnológico en estos ambientes. En este artículo de revisión, nosotros exploramos los diferentes campos de la biotecnología que utilizan microorganismos, los cuales se superponen parcialmente, y describimos los diferentes hábitats marinos que resultan particularmente atractivos para la bioprospección. Además, revisamos los enfoques metodológicos actualmente utilizados para la bioprospección microbiana, desde las técnicas de cultivo tradicionales hasta modernos enfoques

The medicinal Agaricus mushroom cultivated in Brazil: biology, cultivation and non-medicinal valorisation.

Science.gov (United States)

Largeteau, Michèle L; Llarena-Hernández, Régulo Carlos; Regnault-Roger, Catherine; Savoie, Jean-Michel

2011-12-01

Sun mushroom is a cultivated mushroom extensively studied for its medicinal properties for several years and literature abounds on the topic. Besides, agronomical aspects were investigated in Brazil, the country the mushroom comes from, and some studies focus on the biology of the fungus. This review aimed to present an overview of the non-medicinal knowledge on the mushroom. Areas of commercial production and marketing trends are presented. Its specific fragrance, taste, nutritional value and potential use of extracts as food additives are compared to those of the most cultivated fungi and laboratory models. The interest of the mushroom for lignocellulosic enzyme production and source of biomolecules for the control of plant pathogens are shown. Investigation of genetic variability among cultivars is reported. Growing and storage of mycelium, as well as cultivation conditions (substrate and casing generally based on local products; indoor and outdoor cultivation; diseases and disorders) are described and compared to knowledge on Agaricus bisporus.

Definition of Management Zones for Enhancing Cultivated Land Conservation Using Combined Spatial Data

Science.gov (United States)

Li, Yan; Shi, Zhou; Wu, Hao-Xiang; Li, Feng; Li, Hong-Yi

2013-10-01

The loss of cultivated land has increasingly become an issue of regional and national concern in China. Definition of management zones is an important measure to protect limited cultivated land resource. In this study, combined spatial data were applied to define management zones in Fuyang city, China. The yield of cultivated land was first calculated and evaluated and the spatial distribution pattern mapped; the limiting factors affecting the yield were then explored; and their maps of the spatial variability were presented using geostatistics analysis. Data were jointly analyzed for management zone definition using a combination of principal component analysis with a fuzzy clustering method, two cluster validity functions were used to determine the optimal number of cluster. Finally one-way variance analysis was performed on 3,620 soil sampling points to assess how well the defined management zones reflected the soil properties and productivity level. It was shown that there existed great potential for increasing grain production, and the amount of cultivated land played a key role in maintaining security in grain production. Organic matter, total nitrogen, available phosphorus, elevation, thickness of the plow layer, and probability of irrigation guarantee were the main limiting factors affecting the yield. The optimal number of management zones was three, and there existed significantly statistical differences between the crop yield and field parameters in each defined management zone. Management zone I presented the highest potential crop yield, fertility level, and best agricultural production condition, whereas management zone III lowest. The study showed that the procedures used may be effective in automatically defining management zones; by the development of different management zones, different strategies of cultivated land management and practice in each zone could be determined, which is of great importance to enhance cultivated land conservation

Airborne microorganisms from waste containers.

Science.gov (United States)

Jedlicka, Sabrina S; Stravitz, David M; Lyman, Charles E

2012-01-01

In physician's offices and biomedical labs, biological waste is handled every day. This waste is disposed of in waste containers designed for holding red autoclave bags. The containers used in these environments are closed hands-free containers, often with a step pedal. While these containers protect the user from surface-borne microorganisms, the containers may allow airborne microorganisms to escape via the open/close mechanism because of the air current produced upon open/close cycles. In this study, the air current was shown to be sufficient to allow airborne escape of microorganisms held in the container, including Aspergillus niger. However, bacterial cultures, such as Escherichia coli and Lactococcus lactis did not escape. This may be due to the choice of bacterial cultures and the absence of solid waste, such as dust or other particulate matter in the waste containers, that such strains of bacteria could travel on during aerosolization. We compared these results to those obtained using a re-designed receptacle, which mimimizes air currents, and detected no escaping microorganisms. This study highlights one potential source of airborne contamination in labs, hospitals, and other environments that dispose of biological waste.

[Biotechnological cultivation of edible macrofungi: an alternative for obtaining nutraceutics].

Science.gov (United States)

Suárez Arango, Carolina; Nieto, Ivonne Jeannette

2013-01-03

Macromycetes have been part of the human culture for thousand years, and have been reported as food in the most important civilizations in history. Many nutraceutical properties of macromycetes have been described, such as anti-cancer, anti-tumour, cholesterol lowering, antiviral, antibacterial, or immunomodulatory, among others. Given that production of mushrooms by traditional cultivation and extraction of bioactive metabolites is very difficult in some cases, biotechnology is essential for the development of profitable and productive techniques for obtaining these metabolites. It is the development of this technology, and the ease in which it enables the use of its variables that has allowed mycelium to be cultivated in liquid medium of macrofungi, with a significant reduction in time and an increased production of metabolites. This increased production has led to the study of compounds that have medicinal, nutriceutical and quasi-farmaceutical potential, in the exhausted media and the mycelium. The aim of this review is to provide an overview of the use of liquid-state fermentation as a technological tool for obtaining edible fungi, and the study of these and their metabolites, by describing the different cultivation conditions used in recent years, as well as the results obtained. The relevance of Agaricus, Flammulina, Grifola, Pleurotus and Lentinula genera, will also be discussed, with emphasis on the last one, since Shiitake has been always considered as the ultimate medicinal mushroom. Copyright © 2011 Revista Iberoamericana de Micología. Published by Elsevier España, S.L. All rights reserved.

Phylogeography of the wild and cultivated stimulant plant qat (Catha edulis, Celastraceae) in areas of historical cultivation.

Science.gov (United States)

Tembrock, Luke R; Simmons, Mark P; Richards, Christopher M; Reeves, Patrick A; Reilley, Ann; Curto, Manuel A; Meimberg, Harald; Ngugi, Grace; Demissew, Sebsebe; Al Khulaidi, Abdul Wali; Al-Thobhani, Mansoor; Simpson, Sheron; Varisco, Daniel M

2017-04-01

Qat ( Catha edulis , Celastraceae) is a woody plant species cultivated for its stimulant alkaloids. Qat is important to the economy and culture in large regions of Ethiopia, Kenya, and Yemen. Despite the importance of this species, the wild origins and dispersal of cultivars have only been described in often contradictory historical documents. We examined the wild origins, human-mediated dispersal, and genetic divergence of cultivated qat compared to wild qat. We sampled 17 SSR markers and 1561 wild and cultivated individuals across the historical areas of qat cultivation. On the basis of genetic structure inferred using Bayesian and nonparametric methods, two centers of origin in Kenya and one in Ethiopia were found for cultivated qat. The centers of origin in Ethiopia and northeast of Mt. Kenya are the primary sources of cultivated qat genotypes. Qat cultivated in Yemen is derived from Ethiopian genotypes rather than Yemeni wild populations. Cultivated qat with a wild Kenyan origin has not spread to Ethiopia or Yemen, whereas a small minority of qat cultivated in Kenya originated in Ethiopia. Hybrid genotypes with both Ethiopian and Kenyan parentage are present in northern Kenya. Ethiopian cultivars have diverged from their wild relatives, whereas Kenyan qat has diverged less. This pattern of divergence could be caused by the extinction of the wild-source qat populations in Ethiopia due to deforestation, undersampling, and/or artificial selection for agronomically important traits. © 2017 Tembrock et al. Published by the Botanical Society of America. This work is licensed under a Creative Commons public domain license (CC0 1.0).

Final technical report for project titled Quantitative Characterization of Cell Aggregation/Adhesion as Predictor for Distribution and Transport of Microorganisms in Subsurface Environment

Energy Technology Data Exchange (ETDEWEB)

Gu, April Z. [Northeastern Univ., Boston, MA (United States); Wan, Kai-tak [Northeastern Univ., Boston, MA (United States)

2014-09-02

This project aims to explore and develop enabling methodology and techniques for nano-scale characterization of microbe cell surface contact mechanics, interactions and adhesion quantities that allow for identification and quantification of indicative properties related to microorganism migration and transport behavior in porous media and in subsurface environments. Microbe transport has wide impact and therefore is of great interest in various environmental applications such as in situ or enhanced subsurface bioremediation,filtration processes for water and wastewater treatments and protection of drinking water supplies. Although great progress has been made towards understanding the identities and activities of these microorganisms in the subsurface, to date, little is known of the mechanisms that govern the mobility and transport of microorganisms in DOE’s contaminated sites, making the outcomes of in situ natural attenuation or contaminant stability enhancement unpredictable. Conventionally, movement of microorganisms was believed to follows the rules governing solute (particle) transport. However, recent studies revealed that cell surface properties, especially those pertaining to cell attachment/adhesion and aggregation behavior, can cause the microbe behavior to deviate from non-viable particles and hence greatly influence the mobility and distribution of microorganisms in porous media.This complexity highlights the need to obtain detailed information of cell-cell and cell-surface interactions in order to improve and refine the conceptual and quantitative model development for fate and transport of microorganisms and contaminant in subsurface. Traditional cell surface characterization methods are not sufficient to fully predict the deposition rates and transport behaviors of microorganism observed. A breakthrough of methodology that would allow for quantitative and molecular-level description of intrinsic cell surface properties indicative for cell

Bioplastics from microorganisms.

Science.gov (United States)

Luengo, José M; García, Belén; Sandoval, Angel; Naharro, Germán; Olivera, Elías R

2003-06-01

The term 'biomaterials' includes chemically unrelated products that are synthesised by microorganisms (or part of them) under different environmental conditions. One important family of biomaterials is bioplastics. These are polyesters that are widely distributed in nature and accumulate intracellularly in microorganisms in the form of storage granules, with physico-chemical properties resembling petrochemical plastics. These polymers are usually built from hydroxy-acyl-CoA derivatives via different metabolic pathways. Depending on their microbial origin, bioplastics differ in their monomer composition, macromolecular structure and physical properties. Most of them are biodegradable and biocompatible, which makes them extremely interesting from the biotechnological point of view.

Infestation of tall fescue (Festuca arundinacea Schreb. with Neotyphodium coenophialum and its influence on growth of chosen microorganisms in vitro

Directory of Open Access Journals (Sweden)

Dariusz Pańka

2012-12-01

Full Text Available Occurrence of Neotyphodium coenophialum in tall fescue cultivars cultivated in Poland and determination an endophyte inhibition effect on mycelium growth of chosen microorganisms in vitro were investigated. Seventeen seed lots of 11 cultivars of tall fescue were examined. The endophyte mycelium was dyed with bengal rose and microscopically examined to detect N. coenophialum. Occurrence of endophyte was checked with PCR method. Influence of endophyte on growth of 15 microorganisms was established in the laboratory conditions on Petri dishes with PDA medium at 10, 20 and 30°C. Neotyphodium coenophialum occurred only in two seed lots, 'Barrocco' - 42% and Terros - 2%. Living mycelium of endophyte was isolated only from 'Barrocco'. The highest mycelium growth inhibition of Bipolaris sorokiniana, Fusarium avenaceum, F. equiseti, Microdochium nivale and Gaeumannomyces graminis by endophyte at 30°C was recorded. The highest width of growth inhibition zone (4mm was detected for the last pathogen. Mycelium growth of B. sorokiniana and M. nivale was not inhibited at 10°C, and for F. avenaceum at 10 and 20°C.

Radiation resistance of microorganisms on unsterilized infusion sets

DEFF Research Database (Denmark)

Christensen, E. Ahrensburg; Kristensen, H.; Hoborn, J.

1991-01-01

Three different methods were used for detecting and isolating microorganisms with high radiation resistance from the microbial contamination on infusion sets prior to sterilization. By all three methods, microorganisms with a radiation resistance high enough to be a critical factor in a steriliza......Three different methods were used for detecting and isolating microorganisms with high radiation resistance from the microbial contamination on infusion sets prior to sterilization. By all three methods, microorganisms with a radiation resistance high enough to be a critical factor...

New Approach to Inactivation of Harmful and Pathogenic Microorganisms by Photosensitization

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Živile Lukšiene

2005-01-01

Full Text Available Photosensitization is a treatment involving the administration of a photoactive compound that selectively accumulates in the target cells or microorganisms and is followed by irradiation with visible light. The combination of the two absolutely nontoxic elements, drug and light, in the presence of oxygen results in the selective destruction of target microorganism. It is important to note that truly major advances have been made in photosensitized antimicrobial chemotherapy, in particular disinfection of the blood and blood products, or treating local infections. By no means, prevention of any disease by microbial control of environment, including food manufacturing, is of greatest importance. Thus, development of new antimicrobial methods is necessary. In this context, photosensitization has been shown to be really effective: different microorganisms such as drug-resistant bacteria, yeasts, viruses and parasites can be inactivated by this method. So far, a photosensitization phenomenon can open new and interesting avenues for the development of novel, effective and ecologically friendly antimicrobial treatment, which might be applied to increase food safety.

Doppler speedometer for micro-organisms

International Nuclear Information System (INIS)

Penkov, F.; Tuleushev, A.; Lisitsyn, V.; Kim, S.; Tuleushev, Yu.

1996-01-01

Objective of Investigations: Development and creation of the Doppler speedometer for micro-organisms which allows to evaluate, in a real temporal scale, variations in the state of water suspension of micro-organisms under the effect of chemical, physical and other external actions. Statement of the Problem The main problem is absence of reliable, accessible for users and simple, in view of application, Doppler speedometers for micro-organisms. Nevertheless, correlation Doppler spectrometry in the regime of heterodyning the supporting and cell-scattered laser radiation is welt known. The main idea is that the correlation function of photo-current pulses bears an information on the averages over the assembly of cell velocities. For solving the biological problems, construction of auto-correlation function in the real-time regime with the delay time values comprising, function in the real-time regime with the delay time values comprising, nearly, 100 me (10 khz) or higher is needed. Computers of high class manage this problem using but the program software. Due to this, one can simplify applications of the proposed techniques provided he creates the Doppler speedometer for micro-organism on a base of the P entium . Expected Result Manufactured operable mock-up of the Doppler speedometer for micro-organisms in a form of the auxiliary computer block which allows to receive an information, in the real time scale, on the results of external effects of various nature on the cell assembly in transparent medium with a small volume of the studied cell suspension

Biofouling of marbles by oxygenic photosynthetic microorganisms.

Science.gov (United States)

Karaca, Zeki; Öztürk, Ayten; Çolak, Emel

2015-08-01

Phototrophic microorganisms disfigure the surfaces of different types of stone. Stone structure is damaged by the activity of photoautotrophic and other microorganisms. However, to date few, investigations have been undertaken into the relationship between microorganisms and the properties of different types of marble. In this study, biological activity of photoautotrophic microorganisms on three types of marble (Yatagan White, Giallo Anticato and Afyon White) was investigated under laboratory conditions over a short period of time. The three types of marble supported the growth of phototrophic microbial communities on their outer and inner layers, turning their original colour from white to a yellowish green colour. The porosity of the marble types facilitated filamentous microbial growth in the presence of water. Scanning electron microscope analysis revealed the accumulation of aggregates such as small spherical, fibrillar, calcified globular bodies on the inner surfaces of the marbles. This suggests that the microscopic characteristics of particular marble types may stimulate the growth of certain types of microorganisms.

Toxicity of fluoride to microorganisms in biological wastewater treatment systems.

Science.gov (United States)

Ochoa-Herrera, Valeria; Banihani, Qais; León, Glendy; Khatri, Chandra; Field, James A; Sierra-Alvarez, Reyes

2009-07-01

Fluoride is a common contaminant in a variety of industrial wastewaters. Available information on the potential toxicity of fluoride to microorganisms implicated in biological wastewater treatment is very limited. The objective of this study was to evaluate the inhibitory effect of fluoride towards the main microbial populations responsible for the removal of organic constituents and nutrients in wastewater treatment processes. The results of short-term batch bioassays indicated that the toxicity of sodium fluoride varied widely depending on the microbial population. Anaerobic microorganisms involved in various metabolic steps of anaerobic digestion processes were found to be very sensitive to the presence of fluoride. The concentrations of fluoride causing 50% metabolic inhibition (IC(50)) of propionate- and butyrate-degrading microorganisms as well as mesophilic and thermophilic acetate-utilizing methanogens ranged from 18 to 43 mg/L. Fluoride was also inhibitory to nitrification, albeit at relatively high levels (IC(50)=149 mg/L). Nitrifying bacteria appeared to adapt rapidly to fluoride, and a near complete recovery of their metabolic activity was observed after only 4d of exposure to high fluoride levels (up to 500 mg/L). All other microbial populations evaluated in this study, i.e., glucose fermenters, aerobic glucose-degrading heterotrophs, denitrifying bacteria, and H(2)-utilizing methanogens, tolerated fluoride at very high concentrations (>500 mg/L).

Effect of Agave tequilana age, cultivation field location and yeast strain on tequila fermentation process.

Science.gov (United States)

Pinal, L; Cornejo, E; Arellano, M; Herrera, E; Nuñez, L; Arrizon, J; Gschaedler, A

2009-05-01

The effect of yeast strain, the agave age and the cultivation field location of agave were evaluated using kinetic parameters and volatile compound production in the tequila fermentation process. Fermentations were carried out with Agave juice obtained from two cultivation fields (CF1 and CF2), as well as two ages (4 and 8 years) and two Saccharomyces cerevisiae yeast strains (GU3 and AR5) isolated from tequila fermentation must. Sugar consumption and ethanol production varied as a function of cultivation field and agave age. The production of ethyl acetate, 1-propanol, isobutanol and amyl alcohols were influenced in varying degrees by yeast strain, agave age and cultivation field. Methanol production was only affected by the agave age and 2-phenylethanol was influenced only by yeast strain. This work showed that the use of younger Agave tequilana for tequila fermentation resulted in differences in sugar consumption, ethanol and volatile compounds production at the end of fermentation, which could affect the sensory quality of the final product.

Reproducible Biofilm Cultivation of Chemostat-Grown Escherichia coli and Investigation of Bacterial Adhesion on Biomaterials Using a Non-Constant-Depth Film Fermenter

Science.gov (United States)

Lüdecke, Claudia; Jandt, Klaus D.; Siegismund, Daniel; Kujau, Marian J.; Zang, Emerson; Rettenmayr, Markus; Bossert, Jörg; Roth, Martin

2014-01-01

Biomaterials-associated infections are primarily initiated by the adhesion of microorganisms on the biomaterial surfaces and subsequent biofilm formation. Understanding the fundamental microbial adhesion mechanisms and biofilm development is crucial for developing strategies to prevent such infections. Suitable in vitro systems for biofilm cultivation and bacterial adhesion at controllable, constant and reproducible conditions are indispensable. This study aimed (i) to modify the previously described constant-depth film fermenter for the reproducible cultivation of biofilms at non-depth-restricted, constant and low shear conditions and (ii) to use this system to elucidate bacterial adhesion kinetics on different biomaterials, focusing on biomaterials surface nanoroughness and hydrophobicity. Chemostat-grown Escherichia coli were used for biofilm cultivation on titanium oxide and investigating bacterial adhesion over time on titanium oxide, poly(styrene), poly(tetrafluoroethylene) and glass. Using chemostat-grown microbial cells (single-species continuous culture) minimized variations between the biofilms cultivated during different experimental runs. Bacterial adhesion on biomaterials comprised an initial lag-phase I followed by a fast adhesion phase II and a phase of saturation III. With increasing biomaterials surface nanoroughness and increasing hydrophobicity, adhesion rates increased during phases I and II. The influence of materials surface hydrophobicity seemed to exceed that of nanoroughness during the lag-phase I, whereas it was vice versa during adhesion phase II. This study introduces the non-constant-depth film fermenter in combination with a chemostat culture to allow for a controlled approach to reproducibly cultivate biofilms and to investigate bacterial adhesion kinetics at constant and low shear conditions. The findings will support developing and adequate testing of biomaterials surface modifications eventually preventing biomaterial

Microorganisms applying for artificial soil regeneration technology in space greenhouses

Science.gov (United States)

Krivobok, A. S.

2012-04-01

The space greenhouse and technology for growing plants are being designed in frame of bio-technical life support systems development. During long-term space missions such greenhouse could provide the crew with vitamins and rough plant fiber. One of the important elements of the plant cultivation technology in the absence of earth gravity is organization and support the optimum root area. The capillary-porous substrate composed of anionites (FIBAN -1) and cationites (FIBAN -22-1) synthetic salt-saturated fibers is developed for plant cultivation in space and named "BIONA-V3". The BIONA main features are high productivity and usability. But the pointed features are not constant: the substrate productivity will be decreasing gradually from vegetation to vegetation course of plant residues and root secretions accumulation. Also, the basic hydro-physical characteristic of root zone will be shifted. Furthermore, saprotrophic microflora will develop and lead to increasing the level of microbial contamination of whole inhabit isolated module. Due to these changes the substrate useful life is limited and store mass is increased in long-term missions. For overhaul-period renewal it' necessary to remove the roots residues and other organic accumulation providing safety of the substrate capillary-porous structure. The basic components of 24-days old plant roots (Brassica chinensis, L) are cellulose (35 %) hemicellulose (11 %) and lignin (10 %). We see that one of the possible ways for roots residues removal from fibrous BIONA is microorganisms applying with strong cellulolytic and ligninolytic activities. The fungi Trichoderma sp., cellulolytic bacteria associations, and some genus of anaerobic thermophilic cellulolitic bacteria have been used for roots residues biodegradation. In case of applying cellulolytic fungi Trichoderma sp. considerable decrease of microcrystalline cellulose has been noted in both liquid and solid state fermentation. Cellulolytic fungi weight has been

Micro-Raman spectroscopic identification of bacterial cells of the genus Staphylococcus and dependence on their cultivation conditions.

Science.gov (United States)

Harz, M; Rösch, P; Peschke, K-D; Ronneberger, O; Burkhardt, H; Popp, J

2005-11-01

Microbial contamination is not only a medical problem, but also plays a large role in pharmaceutical clean room production and food processing technology. Therefore many techniques were developed to achieve differentiation and identification of microorganisms. Among these methods vibrational spectroscopic techniques (IR, Raman and SERS) are useful tools because of their rapidity and sensitivity. Recently we have shown that micro-Raman spectroscopy in combination with a support vector machine is an extremely capable approach for a fast and reliable, non-destructive online identification of single bacteria belonging to different genera. In order to simulate different environmental conditions we analyzed in this contribution different Staphylococcus strains with varying cultivation conditions in order to evaluate our method with a reliable dataset. First, micro-Raman spectra of the bulk material and single bacterial cells that were grown under the same conditions were recorded and used separately for a distinct chemotaxonomic classification of the strains. Furthermore Raman spectra were recorded from single bacterial cells that were cultured under various conditions to study the influence of cultivation on the discrimination ability. This dataset was analyzed both with a hierarchical cluster analysis (HCA) and a support vector machine (SVM).

Inactivation of Microorganisms

Science.gov (United States)

Alzamora, Stella Maris; Guerrero, Sandra N.; Schenk, Marcela; Raffellini, Silvia; López-Malo, Aurelio

Minimal processing techniques for food preservation allow better retention of product flavor, texture, color, and nutrient content than comparable conventional treatments. A wide range of novel alternative physical factors have been intensely investigated in the last two decades. These physical factors can cause inactivation of microorganisms at ambient or sublethal temperatures (e.g., high hydrostatic pressure, pulsed electric fields, ultrasound, pulsed light, and ultraviolet light). These technologies have been reported to reduce microorganism population in foods while avoiding the deleterious effects of severe heating on quality. Among technologies, high-energy ultrasound (i.e., intensities higher than 1 W/cm2, frequencies between 18 and 100 kHz) has attracted considerable interest for food preservation applications (Mason et al., 1996; Povey and Mason, 1998).

miRNA engineering of CHO cells facilitates production of difficult-to-express proteins and increases success in cell line development.

Science.gov (United States)

Fischer, Simon; Marquart, Kim F; Pieper, Lisa A; Fieder, Juergen; Gamer, Martin; Gorr, Ingo; Schulz, Patrick; Bradl, Harald

2017-07-01

In recent years, coherent with growing biologics portfolios also the number of complex and thus difficult-to-express (DTE) therapeutic proteins has increased considerably. DTE proteins challenge bioprocess development and can include various therapeutic protein formats such as monoclonal antibodies (mAbs), multi-specific affinity scaffolds (e.g., bispecific antibodies), cytokines, or fusion proteins. Hence, the availability of robust and versatile Chinese hamster ovary (CHO) host cell factories is fundamental for high-yielding bioprocesses. MicroRNAs (miRNAs) have emerged as potent cell engineering tools to improve process performance of CHO manufacturing cell lines. However, there has not been any report demonstrating the impact of beneficial miRNAs on industrial cell line development (CLD) yet. To address this question, we established novel CHO host cells constitutively expressing a pro-productive miRNA: miR-557. Novel host cells were tested in two independent CLD campaigns using two different mAb candidates including a normal as well as a DTE antibody. Presence of miR-557 significantly enhanced each process step during CLD in a product independent manner. Stable expression of miR-557 increased the probability to identify high-producing cell clones. Furthermore, production cell lines derived from miR-557 expressing host cells exhibited significantly increased final product yields in fed-batch cultivation processes without compromising product quality. Strikingly, cells co-expressing miR-557 and a DTE antibody achieved a twofold increase in product titer compared to clones co-expressing a negative control miRNA. Thus, host cell engineering using miRNAs represents a promising tool to overcome limitations in industrial CLD especially with regard to DTE proteins. Biotechnol. Bioeng. 2017;114: 1495-1510. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

A Comparative Evaluation of Adherence of Microorganism to Different Types of Brackets: A Scanning Electron Microscopic Study.

Science.gov (United States)

Shashidhar, E P; Sahitya, M; Sunil, T; Murthy, Anup R; Rani, M S

2015-09-01

The purpose of this study was to evaluate and compare the adherence of microorganism to different types of brackets using the scanning electron microscope (SEM). A double-blinded study was undertaken to evaluate and adherence of microorganisms to different types of brackets using SEM. At random, 12 patients reporting for treatment to the department of Orthodontics VS Dental College and Hospital were selected. Four types of brackets were included in the present study stainless steel, titanium, composite, and ceramic. Brackets were bonded to teeth of the patient on all the four quadrants. The teeth included for bonding were lateral incisor, canine, first premolar, and second premolar. The brackets were left for 72 h. After 72 h brackets were debonded, and they were evaluated by SEM for adherence of microorganism in the slot and tie wings surface. The SEM images were graded, and the adherence of microorganism to the brackets in the surfaces and the four different quadrants were recorded. There is a significant difference in adherence of microorganisms to the various types of brackets (P 0.05) included in the study. The interaction of bracket/surface, bracket/quadrant, surface/quadrants was analyzed, there was no significance of comparison of bracket/surfaces/quadrant but the interaction of bracket/quadrant was found to be significant (bracket/surfaces/quadrant was also found to be significant (bracket material and the least adherence of microorganisms was observed with the titanium bracket material. The adherence of microorganisms is relatively more in the slot area, when compare to the tie wings surface maximum adherence of microorganism is observed in the upper left quadrant and least adherence of microorganism is observed in the lower right quadrant. There is a significant difference in adherence of microorganisms to various types of brackets and the surfaces included in the study. There is no significant difference in the adherence of microorganism to the bracket

Isolation and characterization of Arctic microorganisms decomposing bioplastics.

Science.gov (United States)

Urbanek, Aneta K; Rymowicz, Waldemar; Strzelecki, Mateusz C; Kociuba, Waldemar; Franczak, Łukasz; Mirończuk, Aleksandra M

2017-12-01

The increasing amount of plastic waste causes significant environmental pollution. In this study, screening of Arctic microorganisms which are able to degrade bioplastics was performed. In total, 313 microorganisms were isolated from 52 soil samples from the Arctic region (Spitsbergen). Among the isolated microorganisms, 121 (38.66%) showed biodegradation activity. The ability of clear zone formation on emulsified poly(butylene succinate-co-adipate) (PBSA) was observed for 116 microorganisms (95.87%), on poly(butylene succinate) (PBS) for 73 microorganisms (60.33%), and on poly(ɛ-caprolactone) (PCL) for 102 microorganisms (84.3%). Moreover, the growth of microorganisms on poly(lactic acid) (PLA) agar plates was observed for 56 microorganisms (46.28%). Based on the 16S rRNA sequence, 10 bacterial strains which showed the highest ability for biodegradation were identified as species belonging to Pseudomonas sp. and Rhodococcus sp. The isolated fungal strains were tested for polycaprolactone films and commercial corn and potato starch bags degradation under laboratory conditions. Strains 16G (based on the analysis of a partial 18S rRNA sequence, identified as Clonostachys rosea) and 16H (identified as Trichoderma sp.) showed the highest capability for biodegradation. A particularly high capability for biodegradation was observed for the strain Clonostachys rosea, which showed 100% degradation of starch films and 52.91% degradation of PCL films in a 30-day shake flask experiment. The main advantage of the microorganisms isolated from Arctic environment is the ability to grow at low temperature and efficient biodegradation under this condition. The data suggest that C. rosea can be used in natural and laboratory conditions for degradations of bioplastics.

Genome-Based Studies of Marine Microorganisms to Maximize the Diversity of Natural Products Discovery for Medical Treatments

Directory of Open Access Journals (Sweden)

Xin-Qing Zhao

2011-01-01

Full Text Available Marine microorganisms are rich source for natural products which play important roles in pharmaceutical industry. Over the past decade, genome-based studies of marine microorganisms have unveiled the tremendous diversity of the producers of natural products and also contributed to the efficiency of harness the strain diversity and chemical diversity, as well as the genetic diversity of marine microorganisms for the rapid discovery and generation of new natural products. In the meantime, genomic information retrieved from marine symbiotic microorganisms can also be employed for the discovery of new medical molecules from yet-unculturable microorganisms. In this paper, the recent progress in the genomic research of marine microorganisms is reviewed; new tools of genome mining as well as the advance in the activation of orphan pathways and metagenomic studies are summarized. Genome-based research of marine microorganisms will maximize the biodiscovery process and solve the problems of supply and sustainability of drug molecules for medical treatments.

Micrometeorological principles of protected cultivation

Science.gov (United States)

Protected cultivation is a broad term commonly used among producers of specialty crops. Techniques can range from complex fixed structures to field site selection, to straightforward cultural practices in the field. This introduction to the ASHS workshop "Protected cultivation for fruit crops" consi...

Mechanisms of nickel toxicity in microorganisms

Science.gov (United States)

Macomber, Lee

2014-01-01

Summary Nickel has long been known to be an important human toxicant, including having the ability to form carcinomas, but until recently nickel was believed to be an issue only to microorganisms living in nickel-rich serpentine soils or areas contaminated by industrial pollution. This assumption was overturned by the discovery of a nickel defense system (RcnR/RcnA) found in microorganisms that live in a wide range of environmental niches, suggesting that nickel homeostasis is a general biological concern. To date, the mechanisms of nickel toxicity in microorganisms and higher eukaryotes are poorly understood. In this review, we summarize nickel homeostasis processes used by microorganisms and highlight in vivo and in vitro effects of exposure to elevated concentrations of nickel. On the basis of this evidence we propose four mechanisms of nickel toxicity: 1) nickel replaces the essential metal of metalloproteins, 2) nickel binds to catalytic residues of non-metalloenzymes; 3) nickel binds outside the catalytic site of an enzyme to inhibit allosterically, and 4) nickel indirectly causes oxidative stress. PMID:21799955

Transfer of microorganisms, including Listeria monocytogenes, from various materials to beef.

Science.gov (United States)

Midelet, Graziella; Carpentier, Brigitte

2002-08-01

The quantity of microorganisms that may be transferred to a food that comes into contact with a contaminated surface depends on the density of microorganisms on the surface and on the attachment strengths of the microorganisms on the materials. We made repeated contacts between pieces of meat and various surfaces (stainless steel and conveyor belt materials [polyvinyl chloride and polyurethane]), which were conditioned with meat exudate and then were contaminated with Listeria monocytogenes, Staphylococcus sciuri, Pseudomonas putida, or Comamonas sp. Attachment strengths were assessed by the slopes of the two-phase curves obtained by plotting the logarithm of the number of microorganisms transferred against the order number of the contact. These curves were also used to estimate the microbial population on the surface by using the equation of A. Veulemans, E. Jacqmain, and D. Jacqmain (Rev. Ferment. Ind. Aliment. 25:58-65, 1970). The biofilms were characterized according to their physicochemical surface properties and structures. Their exopolysaccharide-producing capacities were assessed from biofilms grown on polystyrene. The L. monocytogenes biofilms attached more strongly to polymers than did the other strains, and attachment strength proved to be weaker on stainless steel than on the two polymers. However, in most cases, it was the population of the biofilms that had the strongest influence on the total number of CFU detached. Although attachment strengths were weaker on stainless steel, this material, carrying a smaller population of bacteria, had a weaker contaminating capacity. In most cases the equation of Veulemans et al. revealed more bacteria than did swabbing the biofilms, and it provided a better assessment of the contaminating potential of the polymeric materials studied here.

[Characteristics of proteins synthesized by hydrogen-oxidizing microorganisms].

Science.gov (United States)

Volova, T G; Barashkov, V A

2010-01-01

The study was conducted to determine the biological value of proteins synthesized by hydrogen-oxidizing microorganisms--the hydrogen bacteria Alcaligenes eutrophus Z1 and Ralstonia eutropha B5786 and the CO-resistant strain of carboxydobacterium Seliberia carboxydohydrogena Z1062. Based on a number of significant parameters characterizing the biological value of a product, the proteins of hydrogen-oxidizing microorganisms have been found to occupy an intermediate position between traditional animal and plant proteins. The high total protein in biomass of these microorganisms, their complete amino acid content, and availability to proteolytic enzymes allow for us to consider these microorganisms as potential protein producers.

Establishment of a Modified in Vitro Cultivation of Protoscoleces to Adult Echinococcus Ganulosus; an Important Way for New Investigations on Hydatidosis

Directory of Open Access Journals (Sweden)

HR Rahimi

2012-02-01

Full Text Available Background: Echinococcus granulosus, a zoonotic cestode parasite, causative agent of hydatid cyst is endemic in many parts of the world including the Middle East. Study on different aspects of this parasite is very important and valuable. However, working with adult worms which their habitat situated in the small intestine of canids, is dangerous and risky. Achieving such risky situation needs a controlled condition which is cultivation of the organisms in the laboratory. In this regard, cultivation of E. granulosus protoscoleces leading to adult worms was established in the laboratory for the first time in Iran.Methods: Under aseptic conditions a number of protoscoleces were cultivated in diphasic S.10E.H medium using CO2 incubator to produce adult worms.Results: Different forms of parasites including pre-segmentation stages (PS1 - PS4 and segmentation stages (S5-S8 and developing stages in segmented worms (S10-S11 were observed and evaluated in these medium. Finally adult worms contained four proglottids with a large and distinct genital pore were observed 50-55 days post cultivation. These parasites do not produce fertile eggs and conclusively do not have risk of hydatid disease transmission to the researchers.Conclusion: The mentioned method for producing E. granulosus adult worms can open a new window for researches and facilitate working on different aspects of hydatidosis especially for diagnosis, protection and treatment studies.

Functional microorganisms for functional food quality.

Science.gov (United States)

Gobbetti, M; Cagno, R Di; De Angelis, M

2010-09-01

Functional microorganisms and health benefits represent a binomial with great potential for fermented functional foods. The health benefits of fermented functional foods are expressed either directly through the interactions of ingested live microorganisms with the host (probiotic effect) or indirectly as the result of the ingestion of microbial metabolites synthesized during fermentation (biogenic effect). Since the importance of high viability for probiotic effect, two major options are currently pursued for improving it--to enhance bacterial stress response and to use alternative products for incorporating probiotics (e.g., ice cream, cheeses, cereals, fruit juices, vegetables, and soy beans). Further, it seems that quorum sensing signal molecules released by probiotics may interact with human epithelial cells from intestine thus modulating several physiological functions. Under optimal processing conditions, functional microorganisms contribute to food functionality through their enzyme portfolio and the release of metabolites. Overproduction of free amino acids and vitamins are two classical examples. Besides, bioactive compounds (e.g., peptides, γ-amino butyric acid, and conjugated linoleic acid) may be released during food processing above the physiological threshold and they may exert various in vivo health benefits. Functional microorganisms are even more used in novel strategies for decreasing phenomenon of food intolerance (e.g., gluten intolerance) and allergy. By a critical approach, this review will aim at showing the potential of functional microorganisms for the quality of functional foods.

Lessons from conducting trans-national Internet-mediated participatory research with hidden populations of cannabis cultivators.

Science.gov (United States)

Barratt, Monica J; Potter, Gary R; Wouters, Marije; Wilkins, Chris; Werse, Bernd; Perälä, Jussi; Pedersen, Michael Mulbjerg; Nguyen, Holly; Malm, Aili; Lenton, Simon; Korf, Dirk; Klein, Axel; Heyde, Julie; Hakkarainen, Pekka; Frank, Vibeke Asmussen; Decorte, Tom; Bouchard, Martin; Blok, Thomas

2015-03-01

Internet-mediated research methods are increasingly used to access hidden populations. The International Cannabis Cultivation Questionnaire (ICCQ) is an online survey designed to facilitate international comparisons into the relatively under-researched but increasingly significant phenomenon of domestic cannabis cultivation. The Global Cannabis Cultivation Research Consortium has used the ICCQ to survey over 6000 cannabis cultivators across 11 countries. In this paper, we describe and reflect upon our methodological approach, focusing on the digital and traditional recruitment methods used to access this hidden population and the challenges of working across multiple countries, cultures and languages. Descriptive statistics showing eligibility and completion rates and recruitment source by country of residence. Over three quarters of eligible respondents who were presented with the survey were included in the final sample of n=6528. English-speaking countries expended more effort to recruit participants than non-English-speaking countries. The most effective recruitment modes were cannabis websites/groups (33%), Facebook (14%) and news articles (11%). While respondents recruited through news articles were older, growing practice variables were strikingly similar between these main recruitment modes. Through this process, we learnt that there are trade-offs between hosting multiple surveys in each country vs. using one integrated database. We also found that although perceived anonymity is routinely assumed to be a benefit of using digital research methodologies, there are significant limits to research participant anonymity in the current era of mass digital surveillance, especially when the target group is particularly concerned about evading law enforcement. Finally, we list a number of specific recommendations for future researchers utilising Internet-mediated approaches to researching hidden populations. Copyright © 2014 Elsevier B.V. All rights reserved.

Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches.

Science.gov (United States)

Papadimitriou, Konstantinos; Zoumpopoulou, Georgia; Foligné, Benoit; Alexandraki, Voula; Kazou, Maria; Pot, Bruno; Tsakalidou, Effie

2015-01-01

Over the past decades the food industry has been revolutionized toward the production of functional foods due to an increasing awareness of the consumers on the positive role of food in wellbeing and health. By definition probiotic foods must contain live microorganisms in adequate amounts so as to be beneficial for the consumer's health. There are numerous probiotic foods marketed today and many probiotic strains are commercially available. However, the question that arises is how to determine the real probiotic potential of microorganisms. This is becoming increasingly important, as even a superficial search of the relevant literature reveals that the number of proclaimed probiotics is growing fast. While the vast majority of probiotic microorganisms are food-related or commensal bacteria that are often regarded as safe, probiotics from other sources are increasingly being reported raising possible regulatory and safety issues. Potential probiotics are selected after in vitro or in vivo assays by evaluating simple traits such as resistance to the acidic conditions of the stomach or bile resistance, or by assessing their impact on complicated host functions such as immune development, metabolic function or gut-brain interaction. While final human clinical trials are considered mandatory for communicating health benefits, rather few strains with positive studies have been able to convince legal authorities with these health claims. Consequently, concern has been raised about the validity of the workflows currently used to characterize probiotics. In this review we will present an overview of the most common assays employed in screening for probiotics, highlighting the potential strengths and limitations of these approaches. Furthermore, we will focus on how the advent of omics technologies has reshaped our understanding of the biology of probiotics, allowing the exploration of novel routes for screening and studying such microorganisms.

Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches

Directory of Open Access Journals (Sweden)

Konstantinos ePapadimitriou

2015-02-01

Full Text Available Over the past decades the food industry has been revolutionized towards the production of functional foods due to an increasing awareness of the consumers on the positive role of food in wellbeing and health. By definition probiotic foods must contain live microorganisms in adequate amounts so as to be beneficial for the consumer’s health. There are numerous probiotic foods marketed today and many probiotic strains are commercially available. However, the question that arises is how to determine the real probiotic potential of microorganisms. This is becoming increasingly important, as even a superficial search of the relevant literature reveals that the number of proclaimed probiotics is growing fast. While the vast majority of probiotic microorganisms are food-related or commensal bacteria that are often regarded as safe, probiotics from other sources are increasingly being reported raising possible regulatory and safety issues. Potential probiotics are selected after in vitro or in vivo assays by evaluating simple traits such as resistance to the acidic conditions of the stomach or bile resistance, or by assessing their impact on complicated host functions such as immune development, metabolic function or gut-brain interaction. While final human clinical trials are considered mandatory for communicating health benefits, rather few strains with positive studies have been able to convince legal authorities with these health claims. Consequently, concern has been raised about the validity of the workflows currently used to characterize probiotics. In this review we will present an overview of the most common assays employed in screening for probiotics, highlighting the potential strengths and limitations of these approaches. Furthermore, we will focus on how the advent of omics technologies has reshaped our understanding of the biology of probiotics, allowing the exploration of novel routes for screening and studying such microorganisms.

Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches

Science.gov (United States)

Papadimitriou, Konstantinos; Zoumpopoulou, Georgia; Foligné, Benoit; Alexandraki, Voula; Kazou, Maria; Pot, Bruno; Tsakalidou, Effie

2015-01-01

Over the past decades the food industry has been revolutionized toward the production of functional foods due to an increasing awareness of the consumers on the positive role of food in wellbeing and health. By definition probiotic foods must contain live microorganisms in adequate amounts so as to be beneficial for the consumer’s health. There are numerous probiotic foods marketed today and many probiotic strains are commercially available. However, the question that arises is how to determine the real probiotic potential of microorganisms. This is becoming increasingly important, as even a superficial search of the relevant literature reveals that the number of proclaimed probiotics is growing fast. While the vast majority of probiotic microorganisms are food-related or commensal bacteria that are often regarded as safe, probiotics from other sources are increasingly being reported raising possible regulatory and safety issues. Potential probiotics are selected after in vitro or in vivo assays by evaluating simple traits such as resistance to the acidic conditions of the stomach or bile resistance, or by assessing their impact on complicated host functions such as immune development, metabolic function or gut–brain interaction. While final human clinical trials are considered mandatory for communicating health benefits, rather few strains with positive studies have been able to convince legal authorities with these health claims. Consequently, concern has been raised about the validity of the workflows currently used to characterize probiotics. In this review we will present an overview of the most common assays employed in screening for probiotics, highlighting the potential strengths and limitations of these approaches. Furthermore, we will focus on how the advent of omics technologies has reshaped our understanding of the biology of probiotics, allowing the exploration of novel routes for screening and studying such microorganisms. PMID:25741323

A study on the comparison of antioxidant effects among wild ginseng, cultivated wild ginseng, and cultivated ginseng extracts

Directory of Open Access Journals (Sweden)

Hae Young, Jang

2008-09-01

Full Text Available Objective : The objective of this study was to compare the antioxidant effects among wild ginseng, cultivated wild ginseng, and ginseng extracts. Methods : In vitro antioxidant activities were examined by total antioxidant capacity (TAC, oxygen radical scavenging capacity(ORAC, total phenolic content, 1, 1-Diphenyl-2-picrylhydrazyl (DPPH radical scavenging activity, inhibition of induced lipid peroxidation using liver mitochondria, reactive oxygen species(ROS scavenging effect using 2’, 7’-dichlorofluorescein(DCF fluorescence. Results : 1. TAC of 1.5 and 3.75 mg extracts was highest in cultivated wild ginseng, followed by wild ginseng and lowest in ginseng. 2. ORAC of 2, 10, and 20 μg extracts was highest in cultivated wild ginseng, followed by wild ginseng and lowest in ginseng. 3. Total phenolic content of 0.375, 0.938, and 1.875 mg extracts was highest in cultivated wild ginseng, followed by wild ginseng and lowest in ginseng. 4. DPPH(1, 1 -Diphenyl-2-picrylhydrazyl scavenging activity between wild ginseng and cultivated wild ginseng did not differ significantly (p>0.05. 5. Induced lipid peroxidation, measured by TBARS concentration in solution containing rat liver mitochondria incubated in the presence of FeSO4/ascorbic acid was inhibited as amounts of wild ginseng, cultivated wild ginseng, and ginseng extracts increased. TBARS concentration of ginseng extracts were significantly (p<0.05 higher than wild ginseng or cultivated wild ginseng extracts. 6. DCF fluorescence intensity was decreased as concentrations of wild ginseng, cultivated wild ginseng, and ginseng extracts increased, demonstrating that ROS generation was inhibited in a concentrationdependent manner. Conclusions : In summary, the results of this study demonstrate that cultivated wild ginseng extracts had similar antioxidant activities to wild ginseng extracts and greater that of cultivated ginseng extracts.

Isolation of microorganisms with capability to degrade polycyclic aromatic hydrocarbons (PATH )

International Nuclear Information System (INIS)

Vargas, M.C; Ramirez, N.E; Rueda, S.M; Sanchez, F.N

1996-01-01

This paper summarizes a work conducted on the isolation of microorganisms of contaminated sediments with a high percentage of hydrocarbons aromatic polynuclear (Polynuclear Aromatic Hydrocarbons, PAHS) The methodology involved two selection systems called fast route and slow route in which exposure periods and contaminant concentrations are the key determinants. The microorganisms isolated through the slow route system are more likely to be successful in degrading high molecular weight PAH'S. The six strains obtained through the fast route system were able to grow on low molecular weight PAH's showing preference towards the first four compounds of the sixteen demanded by the EPA (Environmental Protection Agency)

Fluorescence in situ hybridization (CARD-FISH) of microorganisms in hydrocarbon contaminated aquifer sediment samples.

Science.gov (United States)

Tischer, Karolin; Zeder, Michael; Klug, Rebecca; Pernthaler, Jakob; Schattenhofer, Martha; Harms, Hauke; Wendeberg, Annelie

2012-12-01

Groundwater ecosystems are the most important sources of drinking water worldwide but they are threatened by contamination and overexploitation. Petroleum spills account for the most common source of contamination and the high carbon load results in anoxia and steep geochemical gradients. Microbes play a major role in the transformation of petroleum hydrocarbons into less toxic substances. To investigate microbial populations at the single cell level, fluorescence in situ hybridization (FISH) is now a well-established technique. Recently, however, catalyzed reporter deposition (CARD)-FISH has been introduced for the detection of microbes from oligotrophic environments. Nevertheless, petroleum contaminated aquifers present a worst case scenario for FISH techniques due to the combination of high background fluorescence of hydrocarbons and the presence of small microbial cells caused by the low turnover rates characteristic of groundwater ecosystems. It is therefore not surprising that studies of microorganisms from such sites are mostly based on cultivation techniques, fingerprinting, and amplicon sequencing. However, to reveal the population dynamics and interspecies relationships of the key participants of contaminant degradation, FISH is an indispensable tool. In this study, a protocol for FISH was developed in combination with cell quantification using an automated counting microscope. The protocol includes the separation and purification of microbial cells from sediment particles, cell permeabilization and, finally, CARD-FISH in a microwave oven. As a proof of principle, the distribution of Archaea and Bacteria was shown in 60 sediment samples taken across the contaminant plume of an aquifer (Leuna, Germany), which has been heavily contaminated with several ten-thousand tonnes of petroleum hydrocarbons since World War II. Copyright © 2012 Elsevier GmbH. All rights reserved.

Effect of microorganisms on the chemical behavior of radionuclides in the environment

International Nuclear Information System (INIS)

Amachi, Seigo

2004-01-01

Microorganisms are affecting the fate of various radionuclides in the environment through processes such as sorption, accumulation, reduction, leaching and volatilization. We have studied on the microbial influences on the chemical behavior of iodine in the environment, and have isolated various microorganisms which can mediate volatilization, accumulation and oxidation of iodine. We found that iodine-volatilizing bacteria are distributed widely in the environment, and are very diverse group of bacteria. From gas chromatographic analyses, volatile iodine species produced by bacteria was identified as methyl iodide (CH 3 I). Radiotracer experiments were carried out to estimate bacterial contribution to the volatilization of iodine from soils and seawaters. In soil samples, bacteria were considered to play major roles in iodine volatilization since the addition of bacterial inhibitor almost completely inhibited the volatilization. On the other hand, in seawater samples, both bacterial and fungal (or algal) contributions were suggested. We also isolated iodine-accumulating bacteria and iodine-oxidizing bacteria from the environment. Iodine-accumulating bacteria were isolated from marine sediments, and 16S ribosomal DNA sequences showed that they are close to common marine bacteria Flexibacter sp. During the cultivation with iodide ion, they accumulated iodide intracellularly at a concentration that is more than 1,000 times higher than the culture medium. Iodide uptake by iodine-accumulating bacteria was found to occur biologically, and the uptake was specific for iodide but not for iodate. Iodine-oxidizing bacteria, which can mediate iodide (I - ) oxidation to molecular iodine (I 2 ), were phylogenetically divided into two groups within alpha-Proteobacteria, and iodide oxidation was mediated by an extracellular enzyme protein. (author)

Transformation of the insecticide teflubenzuron by microorganisms

NARCIS (Netherlands)

Finkelstein, Z.I.; Baskunov, B.P.; Rietjens, I.M.C.M.; Boersma, M.G.; Vervoort, J.; Golovleva, L.A.

2001-01-01

Transformation of teflubenzuron, the active component in the insecticide commercialized as Nomolt, by soil microorganisms was studied. It was shown that microorganisms, belonging to Bacillus, Alcaligenes, Pseudomonas and Acinetobacter genera are capable to perform the hydrolytic cleavage of the

Avaliação da atividade de microrganismos do solo em diferentes sistemas de manejo de soja Evaluation of nitrogen fixation and soil microorganisms in soybean under conventional and minimal cultivation regimes

Directory of Open Access Journals (Sweden)

O.M. de Castro

1993-09-01

experiment that consisted of continuous soybean or corn-soybean rotations as summer crops, with oats or Crotalaria juncea as winter crops. Treatments totaled eight cropping system regimes includig the coventional and minimal cultivation. Soil from a nearby natural forest was used as control. There were six replicate pots for each treatment, three of which were additionally inoculated with K japonicum inoculum when soybeans were sown. Plants were harvested at flowering and shoot dry matter and nitrogen concentration were determined, as well as nodule number, nodule weight and percent mycorrhizal colonization of roots. Soil samples from each field treatment that had been kept in the refrigerator were evaluated to determine the total number of bacteria, fungi, cellulolytic microorganisms and nitrifying bacteria. Soybeans grown in soil from minimal cultivation plots and from crop rotations demonstrated significantly greater nodulation and larger cellulolytic populations. Other microbial groups were not highly affected. Percent mycorrhizal infection of roots was extremely low in all treatments, probably due to the high available phosphate levels in all soils.

Advancing gut microbiome research using cultivation

DEFF Research Database (Denmark)

Sommer, Morten OA

2015-01-01

Culture-independent approaches have driven the field of microbiome research and illuminated intricate relationships between the gut microbiota and human health. However, definitively associating phenotypes to specific strains or elucidating physiological interactions is challenging for metagenomic...... approaches. Recently a number of new approaches to gut microbiota cultivation have emerged through the integration of high-throughput phylogenetic mapping and new simplified cultivation methods. These methodologies are described along with their potential use within microbiome research. Deployment of novel...... cultivation approaches should enable improved studies of xenobiotic tolerance and modification phenotypes and allow a drastic expansion of the gut microbiota reference genome catalogues. Furthermore, the new cultivation methods should facilitate systematic studies of the causal relationship between...

Evaluation of two modified culture media for Leishmania infantum cultivation versus different culture media.

Science.gov (United States)

Castelli, Germano; Galante, Antonella; Lo Verde, Vincenza; Migliazzo, Antonella; Reale, Stefano; Lupo, Tiziana; Piazza, Maria; Vitale, Fabrizio; Bruno, Federica

2014-04-01

The aim of this study is to improve the cultivation of Leishmania promastigotes without the use of common, semisolid culture media such as Evans' modified Tobie's medium (EMTM), liquid RPMI 1640, and Peptone-yeast extract medium (P-Y). Although EMTM medium permits the growth of a high number of parasites, it is technically difficult to prepare as it requires the use of fresh rabbit blood from animals bred on farms, while RPMI 1640 and P-Y show lower growth rates than the EMTM. There is, therefore, a need to develop new blood-free and time-saving culture systems. The aim of this paper is to propose new modified microbiological media, named RPMI-PY and Tobie-PY, to isolate Leishmania and cultivate parasites for research and diagnostic purposes. This study compares classic culture media to the new media, RPMI-PY and Tobie-PY, and demonstrates that the new media have superior performance in terms of time and parasitic load. The growth rate of the parasite was significantly higher at 24, 48, and 72 hr cultivation, based on counts using Bürker's chambers, when compared to classic media. This study was carried out at the National References Centre for Leishmaniasis (C.Re.Na.L.) where the isolation procedures are conducted daily from a number of different biological matrices.

Selection of optimum conditions of medium acidity and aeration for submerget cultivation of Bacillus thuringiensis and Beauveria bassiana

Directory of Open Access Journals (Sweden)

O. A. Dregval

2010-06-01

Full Text Available The paper deals with the influence of medium pH and aeration rate on growth and sporulation of Bacillus thuringiensis and Вeauveria bassiana, which are main constituents of the complex microbial insecticide. It was established optimal medium pH for B. thuringiensis – 6.0 and for В. bassiana – 6.0–7.0. The maximum productivity of the studied microorganisms was observed in the same range of aeration – 7– 14 mmol O2/l/h. The selected conditions of cultivation are necessary for the production of complex biological insecticide based on the association of B. thuringiensis and B. bassiana.

Difficult to control atopic dermatitis

Science.gov (United States)

2013-01-01

Difficult to control atopic dermatitis (AD) presents a therapeutic challenge and often requires combinations of topical and systemic treatment. Anti-inflammatory treatment of severe AD most commonly includes topical glucocorticosteroids and topical calcineurin antagonists used for exacerbation management and more recently for proactive therapy in selected cases. Topical corticosteroids remain the mainstay of therapy, the topical calcineurin inhibitors tacrolimus and pimecrolimus are preferred in certain locations. Systemic anti-inflammatory treatment is an option for severe refractory cases. Microbial colonization and superinfection contribute to disease exacerbation and thus justify additional antimicrobial / antiseptic treatment. Systemic antihistamines (H1) may relieve pruritus but do not have sufficient effect on eczema. Adjuvant therapy includes UV irradiation preferably of UVA1 wavelength. “Eczema school” educational programs have been proven to be helpful. PMID:23663504

Conflict Management: Difficult Conversations with Difficult People

OpenAIRE

Overton, Amy R.; Lowry, Ann C.

2013-01-01

Conflict occurs frequently in any workplace; health care is not an exception. The negative consequences include dysfunctional team work, decreased patient satisfaction, and increased employee turnover. Research demonstrates that training in conflict resolution skills can result in improved teamwork, productivity, and patient and employee satisfaction. Strategies to address a disruptive physician, a particularly difficult conflict situation in healthcare, are addressed.

Conflict management: difficult conversations with difficult people.

Science.gov (United States)

Overton, Amy R; Lowry, Ann C

2013-12-01

Conflict occurs frequently in any workplace; health care is not an exception. The negative consequences include dysfunctional team work, decreased patient satisfaction, and increased employee turnover. Research demonstrates that training in conflict resolution skills can result in improved teamwork, productivity, and patient and employee satisfaction. Strategies to address a disruptive physician, a particularly difficult conflict situation in healthcare, are addressed.

[Pattern of growth and metabolism of thermotolerant microorganisms on media containing carbohydrates and hydrocarbons].

Science.gov (United States)

Kvasnikov, E I; Isakova, D M; Eliseeva, G S; Loiko, Z I

1977-01-01

Experiments were carried out to examine the growth and metabolism of thermotolerant yeast Candida tropicalis K-41 and bacteria Micrococcus freudenreichii that do not have a single temperature point but instead have an optimal temperature plateau at which the growth rate and biosynthetic activity remain unaltered or change insignificantly. Upon transition from the carbohydrate to the hydrocarbon pattern of nutrition these microorganisms show significant changes in metabolic processes: optimal concentration of biotin in the medium decreases significantly; the synthesis of riboflavin, nicotinic and pantothenic acids increases in yeast; the synthesis of nicotinic acid, biotin and vitamin B12 increases in bacteria. During microbial cultivation on hydrocarbons the content of cell lipids grows; yeast accumulate actively phospholipids and free fatty acids; bacteria build up intensively waxes and phospholipids. With the near-maximal growth rate the total synthesis of lipids decreases on carbohydrates and increases drastically on hydrocarbons, primarily at the expense of the above fractions.

Fate of indicator microorganisms under nutrient management plan conditions.

Science.gov (United States)

Bradford, Scott A; Segal, Eran

2009-01-01

Nutrient management plans (NMPs) for application of wastewater from concentrated animal feeding operations are designed to meet crop water and nutrient requirements, but implicitly assume that pathogenic microorganisms in the wastewater will be retained and die-off in the root zone. A NMP was implemented on a field plot to test this assumption by monitoring the fate of several fecal indicator microorganisms (Enterococcus, fecal coliforms, somatic coliphage, and total Escherichia coli). When well-water and wastewater were applied to meet measured evapotranspiration (ET), little advective transport of the indicator microorganisms occurred below the root zone and the remaining microorganisms rapidly died-off (within 1 mo). Additional experiments were conducted in the laboratory to better quantify microorganism transport and survival in the field soil. Batch survival experiments revealed much more rapid die-off rates for the bacterial indicator microorganisms in native than in sterilized soil, suggesting that biotic factors controlled survival. Saturated column experiments with packed field soil, demonstrated much greater transport potential for somatic coliphage than bacterial indicators (Enterococcus and total E. coli) and that the retention rates for the indicator microorganisms were not log-linear with depth. A worst case transport scenario of ponded infiltration on a large undistributed soil column from the field was also initiated and indicator microorganisms were not detected in the column outflow or in the soil at a depth of 65 cm. All of these observations support the hypothesis that a NMP at this site will protect groundwater supplies from microorganism contamination, especially when applied water and wastewater meet ET.

Metal-microorganism interactions

International Nuclear Information System (INIS)

Andres, Y.; Thouand, G.; Redercher, S.; Boualam, M.; Texier, A.Cl.; Hoeffer, R.

1997-01-01

The physico-chemical procedures of treating the metalliferous effluents are not always adapted to de polluting the slightly concentrated industrial wastes. An alternative idea was advanced, implying the ability of some microorganisms to fix in considerable amounts the metal ions present in aqueous solutions, possibly in a selective way. This approach has been investigated thoroughly during the last 30 years, particularly from a mechanistic point of view. The advantage of the microorganisms lies mainly in the large diversity of bacteria and in their chemical state dependent interaction with metals, as well as, in the possibilities of developing their selective and quantitative separation properties. A biomass from Mycobacterium smegmatis, an acidic alcoholic resistant bacteria, has been used to prepare a bio-sorption support allowing the preferential sorption of thorium as compared to uranium and lanthanum. These studies have been extended to biological polymers such as chitosan and to studies related to bioaccumulation mechanisms and/or to the microbial resistances towards metals

Studies of marine macroalgae: saline desert water cultivation and effects of environmental stress on proximate composition. Final subcontract report. [Gracilaria tikvahiae; Ulva lactuca

Energy Technology Data Exchange (ETDEWEB)

Ryther, J.H.; DeBusk, T.A.; Peterson, J.E.

1985-11-01

The results presented in this report address the growth potential of marine macroalgae cultivated in desert saline waters, and the effects of certain environmental stresses (e.g., nitrogen, salinity, and temperature) on the proximate composition of several marine macroalgae. Two major desert saline water types were assayed for their ability to support the growth of Gracilaria, Ulva, and Caulerpa. Both water types supported short term growth, but long term growth was not supported. Carbohydrate levels in Gracilaria were increased by cultivation under conditions of high salinity, low temperature, and low nitrogen and phosphorous availability. Data suggests that it may be possible to maximize production of useful proximate constituents by cultivating the algae under optimum conditions for growth, and then holding the resulting biomass under the environmental conditions which favor tissue accumulation of the desired storage products. 16 refs., 21 figs., 19 tabs.

Decomposition of diesel oil by various microorganisms

Energy Technology Data Exchange (ETDEWEB)

Suess, A; Netzsch-Lehner, A

1969-01-01

Previous experiments demonstrated the decomposition of diesel oil in different soils. In this experiment the decomposition of /sup 14/C-n-Hexadecane labelled diesel oil by special microorganisms was studied. The results were as follows: (1) In the experimental soils the microorganisms Mycoccus ruber, Mycobacterium luteum and Trichoderma hamatum are responsible for the diesel oil decomposition. (2) By adding microorganisms to the soil an increase of the decomposition rate was found only in the beginning of the experiments. (3) Maximum decomposition of diesel oil was reached 2-3 weeks after incubation.

Reform of experimental teaching based on quality cultivation

Science.gov (United States)

Wang, Wei; Yan, Xingwei; Liu, Wei; Yao, Tianfu; Shi, Jianhua; Lei, Bing; Hu, Haojun

2017-08-01

Experimental teaching plays an import part in quality education which devotes to cultivating students with innovative spirit, strong technological talents and practical ability. However, in the traditional experimental teaching mode, the experiments are treated as a vassal or supplementary mean of theoretical teaching, and students prefer focus on theory to practice. Therefore, the traditional experimental teaching mode is difficult to meet the requirements of quality education. To address this issue, the reform of experimental teaching is introduced in this paper taking the photoelectric detector experiment as the example. The new experimental teaching mode is designed from such aspects as experimental content, teaching method and experimental evaluation. With the purpose of cultivating students' practical ability, two different-level experimental content is designed. Not only the basic experiments used to verify the theory are set to consolidate the students' learned theoretical knowledge, but also comprehensive experiments are designed to encourage the students to apply their learned knowledge to solve practical problems. In the teaching process, heuristic teaching thought is adopt and the traditional `teacher-centered' teaching form is replaced by `student-centered' form, which aims to encourage students to design the experimental systems by their own with the teacher's guidance. In addition to depending on stimulating the students' interest of science research, experimental evaluation is necessary to urge students to complete the experiments efficiently. Multifaceted evaluation method is proposed to test the students' mastery of theoretical knowledge, practice ability, troubleshooting and problem solving skills, and innovation capability comprehensively. Practices demonstrated the satisfying effect of our experimental teaching mode.

Pharmacotherapeutic approaches for treating psoriasis in difficult-to-treat areas.

Science.gov (United States)

Kivelevitch, Dario; Frieder, Jillian; Watson, Ian; Paek, So Yeon; Menter, M Alan

2018-04-01

Despite great therapeutic advancements in psoriasis, four notable difficult-to-treat areas including the scalp, nails, intertriginous (including genitals), and palmoplantar regions, pose a challenge to both physicians and patients. Localized disease of these specific body regions inflicts a significant burden on patients' quality of life and requires an adequate selection of treatments. Areas covered: This manuscript discusses appropriate therapies and important treatment considerations for these difficult-to-treat areas based on the available clinical data from the literature. Expert opinion: Clinical trials assessing therapies for the difficult-to-treat areas have been inadequate. With the first biological clinical trial for genital psoriasis pending publication, it is with hope that other biological agents will be evaluated for region-specific psoriasis. A greater understanding of the genetic and immunologic aspects of regional psoriasis, as well as identification of unique biomarkers, will further guide management decisions. For example, the recent discovery of the IL-36 receptor gene for generalized pustular psoriasis may prove valuable for other forms of psoriasis. Ultimately, identification of the most beneficial treatments for each psoriasis subtype and difficult-to-treat area will provide patients with maximal quality of life.

Esterase screening using whole cells of Brazilian soil microorganisms

Energy Technology Data Exchange (ETDEWEB)

Mantovani, Simone M.; Oliveira, Luciana G. de; Marsaioli, Anita J., E-mail: anita@iqm.unicamp.b [Universidade Estadual de Campinas (IQ/UNICAMP), SP (Brazil). Inst. de Quimica

2010-07-01

A miniaturized enzymatic assay using fluorescent probes to reveal esterase producing microorganisms was optimized and applied to screen 64 soil bacterial strains. The best results were validated using traditional non-fluorogenic assays with acetyl and propanoyl phenylethanol to confirm the miniaturized results. The most active microorganisms belong to the genus Bacillus showing esterase activity and good enantiomeric ratios for the resolution of phenylethanol derivatives (E > 30). Part of the microorganisms are kept in our laboratory in glycerol or freezedried and the best microorganisms will be deposited in the CBMAI/CPQBA/UNICAMP culture collection. (author)

Effect of copper and lead on two consortia of phototrophic microorganisms and their capacity to sequester metals

Energy Technology Data Exchange (ETDEWEB)

Burgos, A. [Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Edifici C, Campus de UAB, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona (Spain); Departamento de Recursos Hidrobiológicos, Universidad de Nariño, Pasto (N) (Colombia); Maldonado, J. [Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Edifici C, Campus de UAB, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona (Spain); De los Rios, A. [Museo Nacional de Ciencias Naturales(CSIC), Serrano 115 dpdo, 28006 Madrid (Spain); Solé, A. [Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Edifici C, Campus de UAB, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona (Spain); Esteve, I., E-mail: isabel.esteve@uab.cat [Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Edifici C, Campus de UAB, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona (Spain); Departamento de Recursos Hidrobiológicos, Universidad de Nariño, Pasto (N) (Colombia); Museo Nacional de Ciencias Naturales(CSIC), Serrano 115 dpdo, 28006 Madrid (Spain)

2013-09-15

Highlights: •We studied the tolerance-resistance of phototrophic microorganisms to copper and lead. •We determined the capacity of consortia of microorganisms to sequester copper and lead. •CLSM-λscan is a technique for evaluating in vivo effect of metals on microorganisms. •SEM-EDX and TEM-EDX determined the capacity of microorganisms to sequester metals. -- Abstract: The roles of consortia of phototrophic microorganisms have been investigated in this paper to determine their potential role to tolerate or resist metals and to capture them from polluted cultures. With this purpose, two consortia of microorganisms: on one hand, Geitlerinema sp. DE2011 (Ge) and Scenedesmus sp. DE2009 (Sc) (both identified in this paper by molecular biology methods) isolated from Ebro Delta microbial mats, and on the other, Spirulina sp. PCC 6313 (Sp) and Chroococcus sp. PCC 9106 (Ch), from Pasteur culture collection were polluted with copper and lead. In order to analyze the ability of these consortia to tolerate and capture metals, copper and lead were selected, because both have been detected in Ebro Delta microbial mats. The tolerance-resistance to copper and lead for both consortia was determined in vivo and at cellular level by Confocal Laser Scanning Microscopy (CLSM-λscan function). The results obtained demonstrate that both consortia are highly tolerant-resistant to lead and that the limits between the copper concentration having cytotoxic effect and that having an essential effect are very close in these microorganisms. The capacity of both consortia to capture extra- and intracellular copper and lead was determined by Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM) respectively, coupled to an Energy Dispersive X-ray detector (EDX). The results showed that all the microorganisms assayed were able to capture copper extracellularly in the extrapolymeric substances, and lead extra- and intracellularly in polyphosphate inclusions. Moreover

Effect of copper and lead on two consortia of phototrophic microorganisms and their capacity to sequester metals

International Nuclear Information System (INIS)

Burgos, A.; Maldonado, J.; De los Rios, A.; Solé, A.; Esteve, I.

2013-01-01

Highlights: •We studied the tolerance-resistance of phototrophic microorganisms to copper and lead. •We determined the capacity of consortia of microorganisms to sequester copper and lead. •CLSM-λscan is a technique for evaluating in vivo effect of metals on microorganisms. •SEM-EDX and TEM-EDX determined the capacity of microorganisms to sequester metals. -- Abstract: The roles of consortia of phototrophic microorganisms have been investigated in this paper to determine their potential role to tolerate or resist metals and to capture them from polluted cultures. With this purpose, two consortia of microorganisms: on one hand, Geitlerinema sp. DE2011 (Ge) and Scenedesmus sp. DE2009 (Sc) (both identified in this paper by molecular biology methods) isolated from Ebro Delta microbial mats, and on the other, Spirulina sp. PCC 6313 (Sp) and Chroococcus sp. PCC 9106 (Ch), from Pasteur culture collection were polluted with copper and lead. In order to analyze the ability of these consortia to tolerate and capture metals, copper and lead were selected, because both have been detected in Ebro Delta microbial mats. The tolerance-resistance to copper and lead for both consortia was determined in vivo and at cellular level by Confocal Laser Scanning Microscopy (CLSM-λscan function). The results obtained demonstrate that both consortia are highly tolerant-resistant to lead and that the limits between the copper concentration having cytotoxic effect and that having an essential effect are very close in these microorganisms. The capacity of both consortia to capture extra- and intracellular copper and lead was determined by Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM) respectively, coupled to an Energy Dispersive X-ray detector (EDX). The results showed that all the microorganisms assayed were able to capture copper extracellularly in the extrapolymeric substances, and lead extra- and intracellularly in polyphosphate inclusions. Moreover

The production of cyanobacterial carbon under nitrogen-limited cultivation and its potential for nitrate removal.

Science.gov (United States)

Huang, Yingying; Li, Panpan; Chen, Guiqin; Peng, Lin; Chen, Xuechu

2018-01-01

Harmful cyanobacterial blooms (CyanoHABs) represent a serious threat to aquatic ecosystems. A beneficial use for these harmful microorganisms would be a promising resolution of this urgent issue. This study applied a simple method, nitrogen limitation, to cultivate cyanobacteria aimed at producing cyanobacterial carbon for denitrification. Under nitrogen-limited conditions, the common cyanobacterium, Microcystis, efficiently used nitrate, and had a higher intracellular C/N ratio. More importantly, organic carbons easily leached from its dry powder; these leachates were biodegradable and contained a larger amount of dissolved organic carbon (DOC) and carbohydrates, but a smaller amount of dissolved total nitrogen (DTN) and proteins. When applied to an anoxic system with a sediment-water interface, a significant increase of the specific NO X - -N removal rate was observed that was 14.2 times greater than that of the control. This study first suggests that nitrogen-limited cultivation is an efficient way to induce organic and carbohydrate accumulation in cyanobacteria, as well as a high C/N ratio, and that these cyanobacteria can act as a promising carbon source for denitrification. The results indicate that application as a carbon source is not only a new way to utilize cyanobacteria, but it also contributes to nitrogen removal in aquatic ecosystems, further limiting the proliferation of CyanoHABs. Copyright © 2017. Published by Elsevier Ltd.

Pathogenic and opportunistic microorganisms in caves

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Sanchez-Moral Sergio

2010-01-01

Full Text Available With today’s leisure tourism, the frequency of visits to many caves makes it necessary to know about possible potentially pathogenic microorganisms in caves, determine their reservoirs, and inform the public about the consequences of such visits. Our data reveal that caves could be a potential danger to visitors because of the presence of opportunistic microorganisms, whose existence and possible development in humans is currently unknown.

REE Distribution in Cultivated and No Cultivated Soils in Two Viticultural Areas of Central Chile: Mineralogical, Pedological and Anthropic Influences

Science.gov (United States)

Castillo, P.; Townley, B.; Aburto, F.

2017-12-01

Within the scope of a Corfo-Innova Project (I+D Wines of Chile-University of Chile) we have recognized remarkable REE patterns in soils of two vineyards located in traditional vinicultural areas: Casablanca and Santa Cruz. Both vineyards have granitic parent rock, with similar petrographic features and REE patterns. We studied REE distribution on twelve cultivated soil profiles at each vineyard, where a full mineralogical, geochemical and pedogenic sampling and characterization was performed. To establish the effect of management no cultivated soil profiles were included from each vineyard location. REE in soil samples were measured by ICP-MS using two digestion methods: lithium metaborate/tetraborate fusion to obtain REE contents in total soil and MMI® partial extraction technique for REE contents on bioavailable phases.Soils display similar signatures of REEs respect to the rock source at both vineyards, but showing relative enrichments in soils of Casablanca and depletion in soils of Santa Cruz. Bioavailable phase data indicates a relative depletion of LREEs compared to HREEs and different anomalies for Ce (positive vs negative) in different areas of the same vineyard. Similar patterns of soils and parent rock suggest that REEs are adequate tracers of lithological source. Enrichments and/or depletions of REE patterns in soils respect to the rock source and Ce anomalies, evidence differential pedogenetic processes occurring at each sampled site. Results of bioavailable phase are coherent with the immobilization and fractionation of LREEs by stable minerals within soils as clays and Fe oxides. Mineralogical results in soil thin sections of Casablanca evidence the occurrence of Ti phases as sphene, ilmenite and rutile, which probably control the relative REE enrichment, since these minerals are considered more stable under pedogenic conditions.Finally, cultivated soils show a depleted but analogous pattern of REE regarding to no cultivated soil, indicating the

Cultivation Versus Molecular Analysis of Banana (Musa sp.) Shoot-Tip Tissue Reveals Enormous Diversity of Normally Uncultivable Endophytic Bacteria.

Science.gov (United States)

Thomas, Pious; Sekhar, Aparna Chandra

2017-05-01

The interior of plants constitutes a unique environment for microorganisms with various organisms inhabiting as endophytes. Unlike subterranean plant parts, aboveground parts are relatively less explored for endophytic microbial diversity. We employed a combination of cultivation and molecular approaches to study the endophytic bacterial diversity in banana shoot-tips. Cultivable bacteria from 20 sucker shoot-tips of cv. Grand Naine included 37 strains under 16 genera and three phyla (Proteobacteria, Actinobacteria, Firmicutes). 16S rRNA gene-ribotyping approach on 799f and 1492r PCR-amplicons to avoid plant organelle sequences was ineffective showing limited bacterial diversity. 16S rRNA metagene profiling targeting the V3-V4 hypervariable region after filtering out the chloroplast (74.2 %), mitochondrial (22.9 %), and unknown sequences (1.1 %) revealed enormous bacterial diversity. Proteobacteria formed the predominant phylum (64 %) succeeded by Firmicutes (12.1 %), Actinobacteria (9.5 %), Bacteroidetes (6.4 %), Planctomycetes, Cyanobacteria, and minor shares (banana shoot-tips (20 phyla, 46 classes) with about 2.6 % of the deciphered 269 genera and 1.5 % of the 656 observed species from the same source of shoot-tips attained through cultivation. The predominant genera included several agriculturally important bacteria. The study reveals an immense ecosystem of endophytic bacteria in banana shoot tissues endorsing the earlier documentation of intracellular "Cytobacts" and "Peribacts" with possible roles in plant holobiome and hologenome.

Biosurfactants Produced by Marine Microorganisms with Therapeutic Applications.

Science.gov (United States)

Gudiña, Eduardo J; Teixeira, José A; Rodrigues, Lígia R

2016-02-18

Marine microorganisms possess unique metabolic and physiological features and are an important source of new biomolecules, such as biosurfactants. Some of these surface-active compounds synthesized by marine microorganisms exhibit antimicrobial, anti-adhesive and anti-biofilm activity against a broad spectrum of human pathogens (including multi-drug resistant pathogens), and could be used instead of existing drugs to treat infections caused by them. In other cases, these biosurfactants show anti-cancer activity, which could be envisaged as an alternative to conventional therapies. However, marine biosurfactants have not been widely explored, mainly due to the difficulties associated with the isolation and growth of their producing microorganisms. Culture-independent techniques (metagenomics) constitute a promising approach to study the genetic resources of otherwise inaccessible marine microorganisms without the requirement of culturing them, and can contribute to the discovery of novel biosurfactants with significant biological activities. This paper reviews the most relevant biosurfactants produced by marine microorganisms with potential therapeutic applications and discusses future perspectives and opportunities to discover novel molecules from marine environments.

Biosurfactants Produced by Marine Microorganisms with Therapeutic Applications

Directory of Open Access Journals (Sweden)

Eduardo J. Gudiña

2016-02-01

Full Text Available Marine microorganisms possess unique metabolic and physiological features and are an important source of new biomolecules, such as biosurfactants. Some of these surface-active compounds synthesized by marine microorganisms exhibit antimicrobial, anti-adhesive and anti-biofilm activity against a broad spectrum of human pathogens (including multi-drug resistant pathogens, and could be used instead of existing drugs to treat infections caused by them. In other cases, these biosurfactants show anti-cancer activity, which could be envisaged as an alternative to conventional therapies. However, marine biosurfactants have not been widely explored, mainly due to the difficulties associated with the isolation and growth of their producing microorganisms. Culture-independent techniques (metagenomics constitute a promising approach to study the genetic resources of otherwise inaccessible marine microorganisms without the requirement of culturing them, and can contribute to the discovery of novel biosurfactants with significant biological activities. This paper reviews the most relevant biosurfactants produced by marine microorganisms with potential therapeutic applications and discusses future perspectives and opportunities to discover novel molecules from marine environments.

The use of ionizing radiation to reduce food spoilage by microorganisms

International Nuclear Information System (INIS)

Mosquera, Monica; Gomezjurado, Silvia; Munoz, Ricardo

1990-01-01

The contamination of Aspergillus flavus is studied in yellow maize, Zea mays, Peanuts, Arachis hipoguea, L.; Casabe, Yuca. Manhot esculenta, D.C. The contents of aflotoxines B 1 , B 2 , G 1 and G 2 is analized in food stuffs of popular consumption. The samples with higher contamination of A. flavus were irradiated with 1-3 KGy, and combined processes with gamma irradiation were assayed with previous and separate treatments with ammonia and hipochlorite. Thus, it was possible to lower the contamination of this fungus from 10 3 u.f.c/g to 10. Separate edible mushrooms of species Boletus edulis, were radurized with gamma irradiation dose of 2 KGy. It was possible to reduce the contamination of 10 7 microorganism/gram, to the value 10 3 - 10 2 microorganism/gram. The microbial contamination of 18 species and aromatic herbs is also studied. The contaminating fungi of these food products as well as of the edible mushrooms, were identified as Penicillum, Geortrichum, Mucor, Galdosporium and yeasts of Canida sp. The optimal irradiation doses of same species and tea herbs, are determined. At the same time de d10 irradiation doses for pure stubs of main microorganisms are determined. To reduce the microbial contamination of many foodstuffs to maximun permisible values it is proposed thesi technology eitherwith only irradiation, or with combined treatments with irradiation

The Cultivation of Human Granulosa Cells

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Lenka Brůčková

2008-01-01

Full Text Available The major functions of granulosa cells (GCs include the production of steroids, as well as a myriad of growth factors to interact with the oocyte during its development within the ovarian follicle. Also FSH stimulates GCs to convert androgens (coming from the thecal cells to estradiol by aromatase. However, after ovulation the GCs produce progesterone that may maintain a potential pregnancy. Experiments with human GCs are mainly focused on the purification of GCs from ovarian follicular fluid followed by FACS analysis or short-term cultivation. The aim of our study was to cultivate GCs for a long period, to characterize their morphology and phenotype. Moreover, we have cultivated GCs under gonadotropin stimulation in order to simulate different pathological mechanisms during folliculogenesis (e.g. ovarian hyperstimulation syndrome. GCs were harvested from women undergoing in vitro fertilization. Complex oocyte-cumulus oophorus was dissociated by hyaluronidase. The best condition for transport of GCs was optimized as short transport in follicular fluid at 37 °C. GCs expansion medium consisted of DMEM/F12, 2 % FCS, ascorbic acid, dexamethasone, L-glutamine, gentamycine, penicillin, streptomycin and growth factors (EGF, bFGF. GCs transported in follicular fluid and cultivated in 2 % FCS containing DMEM/F12 medium supplemented with follicular fluid presented increased adhesion, proliferation, viability and decreased doubling time. Cell viability was 92 % and mean cell doubling time was 52 hrs. We have optimized transport and cultivation protocols for long-term cultivation of GCs.

Secondary metabolites from marine microorganisms.

Science.gov (United States)

Kelecom, Alphonse

2002-03-01

After 40 years of intensive research, chemistry of marine natural products has become a mature field. Since 1995, there are signals of decreased interest in the search of new metabolites from traditional sources such as macroalgae and octocorals, and the number of annual reports on marine sponges stabilized. On the contrary, metabolites from microorganisms is a rapidly growing field, due, at least in part, to the suspicion that a number of metabolites obtained from algae and invertebrates may be produced by associated microorganisms. Studies are concerned with bacteria and fungi, isolated from seawater, sediments, algae, fish and mainly from marine invertebrates such as sponges, mollusks, tunicates, coelenterates and crustaceans. Although it is still to early to define tendencies, it may be stated that the metabolites from microorganisms are in most cases quite different from those produced by the invertebrate hosts. Nitrogenated metabolites predominate over acetate derivatives, and terpenes are uncommon. Among the latter, sesquiterpenes, diterpenes and carotenes have been isolated; among nitrogenated metabolites, amides, cyclic peptides and indole alkaloids predominate.

Secondary metabolites from marine microorganisms

Directory of Open Access Journals (Sweden)

KELECOM ALPHONSE

2002-01-01

Full Text Available After 40 years of intensive research, chemistry of marine natural products has become a mature field. Since 1995, there are signals of decreased interest in the search of new metabolites from traditional sources such as macroalgae and octocorals, and the number of annual reports on marine sponges stabilized. On the contrary, metabolites from microorganisms is a rapidly growing field, due, at least in part, to the suspicion that a number of metabolites obtained from algae and invertebrates may be produced by associated microorganisms. Studies are concerned with bacteria and fungi, isolated from seawater, sediments, algae, fish and mainly from marine invertebrates such as sponges, mollusks, tunicates, coelenterates and crustaceans. Although it is still to early to define tendencies, it may be stated that the metabolites from microorganisms are in most cases quite different from those produced by the invertebrate hosts. Nitrogenated metabolites predominate over acetate derivatives, and terpenes are uncommon. Among the latter, sesquiterpenes, diterpenes and carotenes have been isolated; among nitrogenated metabolites, amides, cyclic peptides and indole alkaloids predominate.

Exposure of Cucurbita pepo to DDE-contamination alters the endophytic community: A cultivation dependent vs a cultivation independent approach.

Science.gov (United States)

Eevers, N; Hawthorne, J R; White, J C; Vangronsveld, J; Weyens, N

2016-02-01

2,2-bis(p-chlorophenyl)-1,1-dichloro-ethylene (DDE) is the most abundant and persistent degradation product of the pesticide 2,2-bis(p-chlorophenyl)-1,1,1-trichloroethane (DDT) and is encountered in contaminated soils worldwide. Both DDE and DDT are classified as Persistent Organic Pollutants (POPs) due to their high hydrophobicity and potential for bioaccumulation and biomagnification in the food chain. Zucchini (Cucurbita pepo ssp. pepo) has been shown to accumulate high concentrations of DDE and other POPs and has been proposed as a phytoremediation tool for contaminated soils. The endophytic bacteria associated with this plant may play an important role in the remedial process. Therefore, this research focuses on changes in endophytic bacterial communities caused by the exposure of C. pepo to DDE. The total bacterial community was investigated using cultivation-independent 454 pyrosequencing, while the cultivable community was identified using cultivation-dependent isolation procedures. For both procedures, increasing numbers of endophytic bacteria, as well as higher diversities of genera were observed when plants were exposed to DDE. Several bacterial genera such as Stenotrophomonas sp. and Sphingomonas sp. showed higher abundance when DDE was present, while, for example Pseudomonas sp. showed a significantly lower abundance in the presence of DDE. These findings suggest tolerance of different bacterial strains to DDE, which might be incorporated in further investigations to optimize phytoremediation with the possible use of DDE-degrading endophytes. Copyright © 2015 Elsevier Ltd. All rights reserved.

Modelling and application of the inactivation of microorganism

International Nuclear Information System (INIS)

Oğuzhan, P.; Yangılar, F.

2013-01-01

Prevention of consuming contaminated food with toxic microorganisms causing infections and consideration of food protection and new microbial inactivation methods are obligatory situations. Food microbiology is mainly related with unwanted microorganisms spoiling foods during processing and transporting stages and causing diseases. Determination of pathogen microorganisms is important for human health to define and prevent dangers and elongate shelf life. Inactivation of pathogen microorganisms can provide food security and reduce nutrient losses. Microbial inactivation which is using methods of food protection such as food safety and fresh. With this aim, various methods are used such as classical thermal processes (pasteurisation, sterilisation), pressured electrical field (PEF), ionised radiation, high pressure, ultrasonic waves and plasma sterilisation. Microbial inactivation modelling is a secure and effective method in food production. A new microbiological application can give useful results for risk assessment in food, inactivation of microorganisms and improvement of shelf life. Application and control methods should be developed and supported by scientific research and industrial applications

Plasma inactivation of food-related microorganisms in liquids

International Nuclear Information System (INIS)

Marsili, Lisa; Espie, Steven; Anderson, J.G.John G.; MacGregor, S.J.Scott J.

2002-01-01

This paper reports on a plasma process that inactivates microorganisms in liquids through the application of high-voltage pulses. These pulses result in breakdown of the gas and liquid layers, producing many active species such as UV photons, ozone, free radicals and free electrons. Several test microorganisms representing a range of problematic microorganisms were investigated. Significant reductions in microbial population were achieved, demonstrating the effectiveness of using the plasma discharge process to treat contaminated liquids

Life cycle assessment: an application to poplar for energy cultivated in Italy

OpenAIRE

Bacenetti, J.; Gonzalez Garcia, S.; Mena, A.; Fiala, M.

2012-01-01

The development of the bioenergy sector has led to an increasing interest in energy crops. Short rotation coppices (SRC) are forestry management systems in which fast-growing tree species are produced under intensive cultivation practices to obtain high wood chips yields. In Italy, most SRC plantations consist of poplar biomass-clones. SRC plantations can be carried out with different management systems with diverse cutting times; consequently, the cultivation system can be crucial for attain...

Heavy metal removal and recovery using microorganisms

Energy Technology Data Exchange (ETDEWEB)

Wilde, E.W. (Westinghouse Savannah River Co., Aiken, SC (United States)); Benemann, J.R. (Benemann (J.R.), Pinole, CA (United States))

1991-02-01

Microorganisms -- bacteria, fungi, and microalgae -- can accumulate relatively large amounts of toxic heavy metals and radionuclides from the environment. These organisms often exhibit specificity for particular metals. The metal content of microbial biomass can be a substantial fraction of total dry weight with concentration factors (metal in dry biomass to metal in solution) exceeding one million in some cases. Both living and inert (dead) microbial biomass can be used to reduce heavy metal concentrations in contaminated waters to very low levels -- parts per billion and even lower. In many respects (e.g. specificity, residual metal concentrations, accumulation factors, and economics) microbial bioremoval processes can be superior to conventional processes, such as ion exchange and caustic (lime or hydroxide) precipitation for heavy metals removal from waste and contaminated waters. Thus, bioremoval could be developed to contribute to the clean-up of wastes at the Savannah River Site (SRS) and other DOE facilities. However, the potential advantages of bioremoval processes must still be developed into practical operating systems. A detailed review of the literature suggests that appropriate bioremoval processes could be developed for the SRS. There is great variability from one biomass source to another in bioremoval capabilities. Bioremoval is affected by pH, other ions, temperature, and many other factors. The biological (living vs. dead) and physical (immobilized vs. dispersed) characteristics of the biomass also greatly affect metal binding. Even subtle differences in the microbial biomass, such as the conditions under which it was cultivated, can have major effects on heavy metal binding.

Heavy metal removal and recovery using microorganisms

International Nuclear Information System (INIS)

Wilde, E.W.; Benemann, J.R.

1991-02-01

Microorganisms -- bacteria, fungi, and microalgae -- can accumulate relatively large amounts of toxic heavy metals and radionuclides from the environment. These organisms often exhibit specificity for particular metals. The metal content of microbial biomass can be a substantial fraction of total dry weight with concentration factors (metal in dry biomass to metal in solution) exceeding one million in some cases. Both living and inert (dead) microbial biomass can be used to reduce heavy metal concentrations in contaminated waters to very low levels -- parts per billion and even lower. In many respects (e.g. specificity, residual metal concentrations, accumulation factors, and economics) microbial bioremoval processes can be superior to conventional processes, such as ion exchange and caustic (lime or hydroxide) precipitation for heavy metals removal from waste and contaminated waters. Thus, bioremoval could be developed to contribute to the clean-up of wastes at the Savannah River Site (SRS) and other DOE facilities. However, the potential advantages of bioremoval processes must still be developed into practical operating systems. A detailed review of the literature suggests that appropriate bioremoval processes could be developed for the SRS. There is great variability from one biomass source to another in bioremoval capabilities. Bioremoval is affected by pH, other ions, temperature, and many other factors. The biological (living vs. dead) and physical (immobilized vs. dispersed) characteristics of the biomass also greatly affect metal binding. Even subtle differences in the microbial biomass, such as the conditions under which it was cultivated, can have major effects on heavy metal binding

Does nanobiotechnology create new tools to combat microorganisms?

DEFF Research Database (Denmark)

Zielinska-Górska, Marlena K.; Sawosz, Ewa; Górski, Konrad

2017-01-01

Antimicrobial resistance is still a crucial global problem related to the overuse of antibiotics and natural microorganism capability for rapid horizontal evolution. Even new generations of drugs are not able to overcome bacterial defence mechanisms. A novel solution for this immense medical...... challenge can be nanomaterials. Researchers indicate that modern nanoforms can effectively support and perhaps in the long-term replace traditional bactericidal agents. Because of their unique physicochemical properties, nanotechnology products can exert multiple actions against bacteria, which might...

Sideróforos: uma resposta dos microorganismos Siderophores: a microorganism's answer

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Anna Maria Canavarro Benite

2002-12-01

Full Text Available Siderophores (from the Greek: "iron carriers" are defined as relatively low molecular weight, ferric ion specific chelating agents elaborated by microorganisms growing under low iron stress. The role of these compounds is to scavenge iron from the environment and to make this essential chemical element available to the microbial cell. The present paper is a brief presentation of siderophore coordination chemistry with emphasis on those aspects relevant to the transportation of iron (III complexes across biological membranes. Finally, the role of siderophores in infection and their clinical potential as iron scavenging molecules are reviewed.

Micro-compartmentalized cultivation of cyanobacteria for mutant screening using glass slides with highly water-repellent mark

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Sayuri Arai

2014-12-01

Full Text Available Photosynthetic microorganisms such as cyanobacteria have attracted attention for their potential to produce biofuels and biochemicals directly from CO2. Cell isolation by colony has conventionally been used for selecting target cells. Colony isolation methods require a significant amount of time for cultivation, and the colony-forming ratio is potentially low for cyanobacteria. Here, we overcome such limitations by encapsulating and culturing cells in droplets with an overlay of dodecane using glass slides printed with highly water-repellent mark. In the compartmentalized culture, the oil phase protects the small volume of culture medium from drying and increases the CO2 supply. Since a difference in cell growth was observed with and without the addition of antibiotics, this compartmentalized culture method could be a powerful tool for mutant selection.

Component analysis of cultivated ginseng, cultivated wild ginseng, and natural wild ginseng by structural parts using HPLC method

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Young-Ju,Han

2007-02-01

Full Text Available Objectives : The aim of this experiments is to provide an objective differentiation of ginseng, Korean and Chinese cultivated wild ginseng, and natural wild ginseng through components analysis of different parts of ginseng. Methods : Comparative analyses of ginsenoside-, ginsenoside-, and ginsenosides and from the root, stem, and leaves of ginseng, Korean and Chinese cultivated wild ginseng, and natural wild ginseng were conducted using HPLC. Results : 1. For content comparison of leaves, ginseng showed highest content of ginsenoside than other samples. Natural wild ginseng showed relatively high content of ginsenosides and than other samples. 2. For content comparison of the stem, ginseng and 10 years old Chinese cultivated wild ginseng didn't contain ginsenoside . Natural wild ginseng showed higher content of ginsenosides and than other samples. 3. For content comparison of the root, ginsenoside was found only in 5 and 10 years old Korean cultivated wild ginseng. 4. Distribution of contents by the parts of ginseng was similar in ginseng and Chinese cultivated wild ginseng. Conclusions : Above experiment data can be an important indicator for the identification of ginseng, Korean and Chinese cultivated wild ginseng, and natural wild ginseng.

Effective communication during difficult conversations.

Science.gov (United States)

Polito, Jacquelyn M

2013-06-01

A strong interest and need exist in the workplace today to master the skills of conducting difficult conversations. Theories and strategies abound, yet none seem to have found the magic formula with universal appeal and success. If it is such an uncomfortable skill to master is it better to avoid or initiate such conversations with employees? Best practices and evidence-based management guide us to the decision that quality improvement dictates effective communication, even when difficult. This brief paper will offer some suggestions for strategies to manage difficult conversations with employees. Mastering the skills of conducting difficult conversations is clearly important to keeping lines of communication open and productive. Successful communication skills may actually help to avert confrontation through employee engagement, commitment and appropriate corresponding behavior

Synthesis of biosurfactants and their advantages to microorganisms and mankind.

Science.gov (United States)

Cameotra, Swaranjit Singh; Makkar, Randhir S; Kaur, Jasminder; Mehta, S K

2010-01-01

Biosurfactants are surface-active compounds synthesized by a wide variety of microorganisms. They are molecules that have both hydrophobic and hydrophilic domains and are capable of lowering the surface tension and the interfacial tension of the growth medium. Biosurfactants possess different chemical structures--lipopeptides, glycolipids, neutral lipids and fatty acids. They are nontoxic biomolecules that are biodegradable. Biosurfactants also exhibit strong emulsification of hydrophobic compounds and form stable emulsions. The low water solubility of these hydrophobic compounds limits their availability to microorganisms, which is a potential problem for bioremediation of contaminated sites. Microbially produced surfactants enhance the bioavailability of these hydrophobic compounds for bioremediation. Therefore, biosurfactant-enhanced solubility of pollutants has potential applications in bioremediation. Not only are the biosurfactants useful in a variety of industrial processes, they are also of vital importance to the microbes in adhesion, emulsification, bioavailability, desorption and defense strategy. These interesting facts are discussed in this chapter.

Strawberry cultivation in Brazil | Cultivo de morangos no Brasil

Directory of Open Access Journals (Sweden)

José Machado

2016-06-01

Full Text Available The strawberry is cultivated in different regions of the world. Their cultivation have shown demand larger family hand labor and highly profitable.  The strawberry is a very old fruit. Wild species existed for more 50 million years, but the specie was tamed around the XIV century A.C.  There are various types of cultivation, among them stand out traditional cultivation and organic cultivation. The more important factors affecting the strawberries are climate, pests and diseases. Know the types of cultivation and strawberry it is important for decision making in the future, such as use of lichens in cultivation. The aim of this work is to explain about conventional and organic agriculture with emphasis in lichens on strawberry crop to support scientific research in more depth character.> S

Microorganisms and methods for producing pyruvate, ethanol, and other compounds

Energy Technology Data Exchange (ETDEWEB)

Reed, Jennifer L.; Zhang, Xiaolin

2017-12-26

Microorganisms comprising modifications for producing pyruvate, ethanol, and other compounds. The microorganisms comprise modifications that reduce or ablate activity of one or more of pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase, phosphate acetyltransferase, acetate kinase, pyruvate oxidase, lactate dehydrogenase, cytochrome terminal oxidase, succinate dehydrogenase, 6-phosphogluconate dehydrogenase, glutamate dehydrogenase, pyruvate formate lyase, pyruvate formate lyase activating enzyme, and isocitrate lyase. The microorganisms optionally comprise modifications that enhance expression or activity of pyruvate decarboxylase and alcohol dehydrogenase. The microorganisms are optionally evolved in defined media to enhance specific production of one or more compounds. Methods of producing compounds with the microorganisms are provided.

Evaluating lek occupancy of greater sage-grouse in relation to landscape cultivation in the Dakotas

Science.gov (United States)

Smith, Joe T.; Flake, Lester D.; Higgins, Kenneth F.; Kobriger, Gerald D.; Homer, Collin G.

2005-01-01

Greater Sage-Grouse (Centrocercus urophasianus) have been declining in many states and provinces of North America, and North and South Dakota hold no exception to these declines. We studied effects of cultivated land on Greater Sage-Grouse lek abandonment in North and South Dakota. Landscape-level data were assessed using satellite imagery within a geographic information system. Comparisons were made of 1972-1976 and 1999-2000 percent cultivated and noncultivated land. These comparisons were made between land uses surrounding active leks versus inactive leks, active leks versus random locations, and abandoned regions versus active regions. The 1999-2000 imagery illustrated that percent cultivated land was greater near abandoned leks (4-km buffers) than near active leks in North Dakota or random sites, but this did not hold true in South Dakota. Comparison of an extensive region of abandoned leks with a region of active leks in North Dakota illustrated a similar increase as well as dispersion of cultivation within the abandoned region. However, 1972-1976 imagery revealed that this relationship between percentage of cultivated land and lek activity in North Dakota has been static over the last 30 years. Thus, if the decline of Greater Sage-Grouse is the result of cultivated land infringements, it occurred prior to 1972 in North Dakota.

Agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation

Directory of Open Access Journals (Sweden)

Matheus Marchezi Mora

2015-02-01

Full Text Available For orchid cultivation in containers is essential to select the right substrate, since this will influence the quality of the final product, it serve as a support for the root system of the plants. This study aimed to evaluate different agricultural residues and expanded clay in Oncidium baueri Lindl. orchid cultivation. The plants were subjected to treatments: pinus husk + carbonized rice husk, pinus husk + coffee husk, pinus husk + fibered coconut, pecan nut husk, expanded clay, fibered coconut, coffee husk, carbonized rice husk, pinus husk. After eleven months of the experiment, the following variables were evaluated: plant height; largest pseudo-bulb diameter; number of buds; shoot fresh dry matter; the longest root length; number of roots; root fresh matter; root dry matter; and electric conductivity; pH and water retention capacity of the substrates. Except the expanded clay, the other substrates showed satisfactory results in one or more traits. Standing out among these substrates pinus husk + coffee husk and pine bark + fibered coconut, which favored the most vegetative and root characteristic of the orchid. The mixture of pinus husk + coffee husk and pinus husk + fibered coconut, provided the best results in vegetative and root growth of the orchid Oncidium baueri and the expanded clay did not show favorable results in the cultivation of this species.

The Cultivation of Cultural Awareness in English Teaching

Institute of Scientific and Technical Information of China (English)

王宁

2015-01-01

As the development of the information age,the cultivation of intercultural communicative competence has been extremely important. Thus foreign language teaching lays stress on the cultivation of language comprehensive application ability. Culture awareness is an important part of language comprehensive application ability. The cultivating of students’ cultural awareness is beneficial to improve their humanistic quality,broaden their international view,strengthen their patriotism spirit and sense of national mission,and achieve their all-round development. The paper will discuss the current situation of cultural awareness cultivation in English teaching. In view of the problems and its causes existing in the cultural awareness cultivation,three count measures have been proposed.

Microorganisms of Grape Berries

Directory of Open Access Journals (Sweden)

Kántor Attila

2017-12-01

Full Text Available Grape surface is an unstable habitat that changes greatly according to the stage of grape ripening. Different bacteria and yeasts can colonise the surface of grape berry and the diversity of microorganisms depends on the stage of ripening, pesticide application and health condition. The aim of this study was to study the microflora of the surface of grape berries. Altogether, 19 grape samples from Slovakia were collected. The spread plate method was applied and a 100 μL inoculum of each dilution (10−2, 10−3 was plated on TSA, MEA, and MRS agar for isolation of microorganisms from grapes. Proteins were extracted from cells by ethanol/formic acid extraction procedure. MALDI-TOF Mass Spectrometry was used for identification of microorganisms. In total, 11 genera of Gram-negative bacteria, 11 of Gram-positive bacteria and nine of yeasts were identified. Among 200 isolates, Gram-negative, Gram-positive bacteria and yeasts represented 11%, 27% and 62% of the total number of isolates studied. The most common genera of isolated yeasts were Hanseniaspora (37%, Metschnikowia (31%, and Rhodotorula (10%. The most frequently isolated among Gram-negative bacteria were Acinetobacter (22%, Pseudomonas (22% and Sphingomonas (13%. The most common genera of Gram-positive bacteria were Bacillus (20%, Lactobacillus (19%, Leuconostoc and Staphylococcus (11%, respectively.

Advancing metabolic engineering through systems biology of industrial microorganisms

DEFF Research Database (Denmark)

Dai, Zongjie; Nielsen, Jens

2015-01-01

resources. The objective of systems biology is to gain a comprehensive and quantitative understanding of living cells and can hereby enhance our ability to characterize and predict cellular behavior. Systems biology of industrial microorganisms is therefore valuable for metabolic engineering. Here we review......Development of sustainable processes to produce bio-based compounds is necessary due to the severe environmental problems caused by the use of fossil resources. Metabolic engineering can facilitate the development of highly efficient cell factories to produce these compounds from renewable...... the application of systems biology tools for the identification of metabolic engineering targets which may lead to reduced development time for efficient cell factories. Finally, we present some perspectives of systems biology for advancing metabolic engineering further....

PROBIOTICS BASED ON TRANSGENIC MICROORGANISMS

Directory of Open Access Journals (Sweden)

S. А. Starovoitova

2012-02-01

Full Text Available Modern tendencies of recombinant microorganisms creation for obtaining on their basis a new effective biopreparations (probiotics with wider spectrum of biological and therapeutic properties were considered. A lot of attention was focused on the main genera of perspective bacteria for creation of recombinant probiotics particularly: Lactococcus, Bifidobac terium,Bacillus, Escherichia. The main created Ukrainian and foreign gene-modified strains, that are widely used today in creation of effective recombinant biopreparations were characterized. Some fundamental directions and methods of gene-modified strains obtaining, which are used in getting effective biopreparations that used for therapy and prophylactic illness were reported, under which this group of pharmaceutical drugs were not used earlier. The safety matters of probiotics using on basis of genemodified strains were examined. Medical and veterinary biopreparations on basis of recombinant microorganisms could be used directly and effectively for therapy and prophylaxis of different illness, beginning from disbacteriosis up to cardiovascular diseases. It is related with some probiotic microorganisms ability for lowering of serum cholesterol at the host organism.

Glyphosate-Degrading Microorganisms from Industrial Activated Sludge

OpenAIRE

Balthazor, Terry M.; Hallas, Laurence E.

1986-01-01

A plating medium was developed to isolate N-phosphonomethylglycine (glyphosate)-degrading microorganisms, with glyphosate as the sole phosphorus source. Two industrial biosystems treating glyphosate wastes contained elevated microbial counts on the medium. One purified isolate metabolized glyphosate to aminomethylphosphonic acid, mineralizing this accumulating intermediate during log growth. This microorganism has been identified as a Flavobacterium species.

Mechanisms of nickel toxicity in microorganisms

OpenAIRE

Macomber, Lee; Hausinger, Robert P.

2011-01-01

Nickel has long been known to be an important human toxicant, including having the ability to form carcinomas, but until recently nickel was believed to be an issue only to microorganisms living in nickel-rich serpentine soils or areas contaminated by industrial pollution. This assumption was overturned by the discovery of a nickel defense system (RcnR/RcnA) found in microorganisms that live in a wide range of environmental niches, suggesting that nickel homeostasis is a general biological co...

Selenium determination in cereal plants and cultivation soils by radiochemical neutron activation analysis

International Nuclear Information System (INIS)

Galinha, C.; Freitas, M.C.; Anawar, H.M.; Pacheco, A.M.G.; Kamenik, J.; Kucera, J.; Coutinho, J.; Macas, B.; Almeida, A.S.

2012-01-01

Selenium (Se) is an essential micronutrient for human health but it is deficient in at least 1 billion people around the globe. Cereals are by far the most significant agricultural crops, not only on a gross tonnage basis, but also by what they represent in terms of energy supply and dietary intake for human nutrition worldwide. Portugal is no exception to such pattern. The Portuguese situation is difficult to assess though, due to scarce information and lack of consistent studies on the subject. In these terms, the Se status of major cereals and their cultivation soils are dealt with herein. Two species of wheat-bread and durum wheat-were sown at the end of November 2009, and then sampled in different growth stages. Rye was collected during harvest season, and cultivation soils were analyzed as well. Se results were within the range of: 100-225 ng g -1 for soils; 3-55 ng g -1 for durum wheat; 6-80 ng g -1 for bread wheat; and 4-30 ng g -1 for rye. Accuracy of the RNAA procedure was proved by analysis of reference materials NIST-SRM 1515 and NIS-SRM 8433. (author)

Antimicrobial Compounds from Marine Invertebrates-Derived Microorganisms.

Science.gov (United States)

Liu, Juan; Jung, Jee H; Liu, Yonghong

2016-01-01

It is known that marine invertebrates, including sponges, tunicates, cnidaria or mollusks, host affluent and various communities of symbiotic microorganisms. The microorganisms associated with the invertebrates metabolized various biologically active compounds, which could be an important resource for the discovery and development of potentially novel drugs. In this review, the new compounds with antimicrobial activity isolated from marine invertebrate-derived microorganisms in the last decade (2004-2014) will be presented, with focus on the relevant antimicrobial activities, origin of isolation, and information of strain species. New compounds without antimicrobial activity were not revealed.

Application of thermotolerant microorganisms for biofertilizer preparation.

Science.gov (United States)

Chen, Kuo-Shu; Lin, Yann-Shying; Yang, Shang-Shyng

2007-12-01

Intensive agriculture is practised in Taiwan, and compost application is very popular as a means of improving the soil physical properties and supplying plant nutrition. We tested the potential of inoculation with thermotolerant microorganisms to shorten the maturity and improve the quality of biofertilizer prepared by composting. Thermotolerant microorganisms were isolated from compost and reinoculated for the preparation of biofertilizer. The physical, chemical and biological properties of the biofertilizer were determined during composting. The effects of biofertilizer application on the growth and yield of rape were also studied. Among 3823 colonies of thermotolerant microorganisms, Streptomyces thermonitrificans NTU-88, Streptococcus sp. NTU-130 and Aspergillus fumigatus NTU-132 exhibited high growth rates and cellulolytic and proteolytic activities. When a mixture of rice straw and swine manure were inoculated with these isolates and composted for 61 days, substrate temperature increased initially and then decreased gradually during composting. Substrate pH increased from 7.3 to 8.5. Microbial inoculation enhanced the rate of maturity, and increased the content of ash and total and immobilized nitrogen, improved the germination rate of alfalfa seed, and decreased the content of total organic carbon and the carbon/nitrogen ratio. Biofertilizer application increased the growth and yield of rape. Inoculation of thermotolerant and thermophilic microorganisms to agricultural waste for biofertilizer preparation enhances the rate of maturity and improves the quality of the resulting biofertilizer. Inoculation of appropriate microorganisms in biofertilizer preparation might be usefully applied to agricultural situations.

Nitrogen acquisition by plants and microorganisms in a temperate grassland.

Science.gov (United States)

Liu, Qianyuan; Qiao, Na; Xu, Xingliang; Xin, Xiaoping; Han, Jessie Yc; Tian, Yuqiang; Ouyang, Hua; Kuzyakov, Yakov

2016-03-10

Nitrogen (N) limitation is common in most terrestrial ecosystems, often leading to strong competition between microorganisms and plants. The mechanisms of niche differentiation to reduce this competition remain unclear. Short-term (15)N experiments with NH4(+), NO3(-), and glycine were conducted in July, August and September in a temperate grassland to evaluate the chemical, spatial and temporal niche differentiation by competition between plants and microorganisms for N. Microorganisms preferred NH4(+) and NO3(-), while plants preferred NO3(-). Both plants and microorganisms acquired more N in August and September than in July. The soil depth had no significant effects on microbial uptake, but significantly affected plant N uptake. Plants acquired 67% of their N from the 0-5 cm soil layer and 33% from the 5-15 cm layer. The amount of N taken up by microorganisms was at least seven times than plants. Although microorganisms efficiently compete for N with plants, the competition is alleviated through chemical partitioning mainly in deeper soil layer. In the upper soil layer, neither chemical nor temporal niche separation is realized leading to strong competition between plants and microorganisms that modifies N dynamics in grasslands.

Establishing Drug Resistance in Microorganisms by Mass Spectrometry

Science.gov (United States)

Demirev, Plamen A.; Hagan, Nathan S.; Antoine, Miquel D.; Lin, Jeffrey S.; Feldman, Andrew B.

2013-08-01

A rapid method to determine drug resistance in bacteria based on mass spectrometry is presented. In it, a mass spectrum of an intact microorganism grown in drug-containing stable isotope-labeled media is compared with a mass spectrum of the intact microorganism grown in non-labeled media without the drug present. Drug resistance is determined by predicting characteristic mass shifts of one or more microorganism biomarkers using bioinformatics algorithms. Observing such characteristic mass shifts indicates that the microorganism is viable even in the presence of the drug, thus incorporating the isotopic label into characteristic biomarker molecules. The performance of the method is illustrated on the example of intact E. coli, grown in control (unlabeled) and 13C-labeled media, and analyzed by MALDI TOF MS. Algorithms for data analysis are presented as well.

Contribution of the genetic improvement to the development of the cultivation of Colombian coffee

International Nuclear Information System (INIS)

Moreno Ruiz, German

1994-01-01

After several years of study trying to obtain a variety of resistant coffee to the Rust, the variety Colombia was obtained, which is considered as the contribution more important that has made the genetic improvement to the cultivation of Colombian coffee and consequently to optimize the cultivations and to improve the environment

Isolation and characterization of microorganisms and volatiles associated with Moroccan saffron during different processing treatments.

Science.gov (United States)

Fancello, Francesco; Petretto, Giacomo; Sanna, Maria Lina; Pintore, Giorgio; Lage, Mounira; Zara, Severino

2018-05-20

Saffron may be spoiled by a variety of microorganisms during cultivation, harvesting, and post harvesting. As saffron can be dried and stored in different ways, this preliminary study explored the natural microbiota present in Moroccan saffron when subjected to different drying techniques. An analysis of the carotenoid-derived volatiles present in the saffron was also carried out. The culturable microbiota of the saffron samples dried using different methods, namely in the shade (also called natural), in the sun, or in the oven, were studied using classical and molecular approaches. The effect of the drying methods on head-space chemical volatiles was also determined. Eighty-two isolates grown in the different culture media were chosen from the colonies, and genotype analysis grouped the microorganisms into 58 clusters, revealing a wide diversity. Out of the 82 isolates, 75 belonged to the Bacillaceae family. The other isolates were distributed within the Dietziaceae, Paenibacillaceae and Carnobacteriaceae families. The dominant species was Bacillus simplex, which was detected in all samples, regardless of the drying method used. Lysinibacillus macroides was dominant in the sun-dried saffron. No pathogens were isolated, but an isolate belonging to Dietzia maris, a potential human pathogenic species, was detected. The biodiversity indexes were linked to the drying method and generally decreased as the intensity of the treatment increased. The results of this preliminary work show that the different drying methods strongly influenced the microbiota and affect the saffron volatile profile. Further analysis will be needed to determine possible effects of selected microbiota on saffron volatiles. Copyright © 2018 Elsevier B.V. All rights reserved.

A study on the comparison of antioxidant effects among cultivated ginseng, and cultivated wild ginseng extracts -Using the measurement of superoxide and hydroxy radical scavenging activities-

Directory of Open Access Journals (Sweden)

Tae Jin, Rhim

2009-06-01

Full Text Available Objectives : The objective of this study was to compare the antioxidant effects among cultivated wild ginseng and ginseng extracts. Methods : In vitro antioxidant activities were examined by superoxide and hydroxyl radical scavenging activities of ginseng and cultivated wild ginseng extracts. Results : 1. In the superoxide radical scavenging activities of ginseng and cultivated wild ginseng extracts, antioxidant activities of cultivated wild ginseng extracts was showed higher than cultivated ginseng in the concentration of 0.25 and 0.50㎎/㎖. 2. In the hydroxyl radical scavenging activities of ginseng and cultivated wild ginseng extracts, antioxidant activities of cultivated wild ginseng extracts was showed higher than cultivated ginseng in the concentration of 1.0, 2.5, and 5.0㎎/㎖. Conclusions : In summary, the results of this study demonstrate that cultivated wild ginseng extracts had higher antioxidant activities to cultivated ginseng.

Effects of the Atrazine herbicide over the diazotrophic microorganisms associated with corn in a Saldana soil (Tolima); Efecto del herbicida Atrazina sobre los microorganismos diazotrofos asociados a un cultivo de maiz en un suelo de Saldana (Tolima)

Energy Technology Data Exchange (ETDEWEB)

Ordonez, Alba R; Lozano de Yunda, A; Fuentes, C

1999-12-01

In this study, it was evaluated, at greenhouse in soil pots, the effect of the herbicide atrazine in different dose (corresponding to o, 0.75, 1.5 and 3.0 kg of soil hectare) over time (15, 30, 45, 60 and 90 days after the application) on the diazotrophic micro-organisms associated with rhizosphere soil and root of a corn cultivation in a clay loam soil of Saldana - Tolima. It was determined the population of diazotrophic microorganisms in soil by the most probable number technique; also it was observed the characteristic growth in the specific cultivation semisolid Nfb-malic acid medium and was evaluated the nitrogenase activity by means of the acetylene reduction technique. Of the same form, it was observed the characteristic growth and it was evaluated the nitrogenase activity of direct fragment sowings of root in the Nfb-malic acid medium. The 60.8% of soil isolates presented characteristic cultural growth in the form of whitish pellicle under the surface of the medium. in the root 83.3% showed this type of growth. The population of diazotrophic microorganisms of soil did not present significant differences ({alpha} = 0.05) between treatments neither over time the nitrogenase activity of soil dilutions demonstrated that there is no a significant effect ({alpha} = 0.05) of the treatments (dose) but if there is significant effect of the time. The highest values were presented to 45 days of application of the herbicide, with the application of the highest dose. the nitrogenase activity in the root to what is long of the time was different from rhizosphere soil. The treatment without application of atrazine presented greater values to what is long of the time, however, also in this case were not presented significant differences ({alpha} = 0.05) between the treatments (dose) neither to what is long of the time. For so much, as a conclusion, they were not presented effects on the population and the nitrogenase activity of the diazotrophic microorganisms until 90

Fiscal 1997 research report on development of use technology of bio-resources such as complex biosystem (Development of use and production technologies of complex biosystems); 1997 nendo fukugo seibutsukei nado seibutsu shigen riyo gijutsu kaihatsu seika hokokusho (fukugo seibutsukei riyo seisan gijutsu no kaihatsu)

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-03-01

This report summarizes the fiscal 1997 research results on production technology of functional materials, and the research study result for utilizing substance production and decomposition by complex biosystem for industries. For detecting technique of microorganisms in soil, staining by CFDA-AM was suitable, and allowed visualization of sulfate- reducing bacteria during culture. For research on functional analysis technology, study was made on atomic force microscope technology to detect microorganisms in environment and observe their fine structures. For research on detection, separation and cultivation technology of difficult-to-culture microorganisms, a molecular genetic analysis method of microbial communities and a determination method of their viability were selected. For functional substance production technology, study was made on technical utilization of bioflocculant produced by microbial consortia as environment-friendly oil removal reagent, and on gene transfer control in microbial consortia. For the research study for the project, survey was made on useful substances produced by complex biosystem. (NEDO)

the economic importance of microorganism in food processing

African Journals Online (AJOL)

BSN

This paper attempts to highlight the Economic Importance of microorganisms in food processing and manufacturing; it goes further to differentiate between the desirable ... Desirable importance are those cost saving and revenue generating activities ... Microorganism (yeast) play very useful role in the Bakery industries.

Interesting cases which were difficult to diagnose by CT

International Nuclear Information System (INIS)

Ueki, Koji; Okubo, Koichi; Shinohara, Shinji

1981-01-01

Computed tomography (CT) clinically provides us with much more useful diagnostic informations regarding the localization, size, shape, extent and inner structure of the lesions and then in some cases the specific diagnosis can be also obtained by CT alone. However, it is usually difficult to define the longitudinal extent of the lesions, their relation to adjacent tissues, the originated site in enormous lesion and histological type also. At CT examination, it is essential to recognize these drawback and limitation on CT. From these points of view, six interesting cases (i.e. pericardial diverticulum, hepatoma with retroperitoneal metastasis, cholangiohepatoma, afferent loop syndrome, invagination and retroperitoneal malignant schwannoma) which were difficult to diagnose by CT and proved ultimately with operation or autopsy were illustrated with some reviews. (author)

Catch the Best: Novel Screening Strategy to Select Stress Protecting Agents for Crop Plants

Directory of Open Access Journals (Sweden)

Christin Zachow

2013-11-01

Full Text Available Climate change increases stress levels for crops and affects the economic and environmental aspects of agricultural management systems. The application of stress tolerance-mediating microorganisms is an auspicious strategy for improving crop protection, and as such, we developed a direct selection strategy to obtain cultivable microorganisms from promising bioresources using the bait plants, maize, oilseed rape, sorghum and sugar beet. Alpine mosses, lichens and primrose were selected as bioresources, as each is adapted to adverse environmental conditions. A 10% crop-specific selection was found for bait plant rhizosphere communities using cultivation-independent fingerprints, and their potential role as stress protecting agents (SPA was evaluated following the cultivation of captured bacteria. In addition to assays identifying phytopathogen antagonism and plant growth promotion capacities, our evaluation included those that test the ability to allocate nutrients. Moreover, we developed new assays to measure tolerance in diverse stress conditions. A score scheme was applied to select SPAs with desired properties, and three Pseudomonas species with pronounced antagonistic activity that showed elevated tolerance to desiccation and an improved seed germination rate were subsequently chosen. Screening for environmentally-conditioned and host-adapted microorganisms provides a novel tool for target-oriented exploitation of microbial bioresources for the management of ecofriendly crops facing biotic and abiotic stresses.

Changes in immunoferritin labeling of Rickettsia tsutsugamushi after serial cultivation in 60Co-irradiated BHK cells

International Nuclear Information System (INIS)

Rikihisa, Y.; Rota, T.; Lee, T.H.; MacDonald, A.B.; Ito, S.

1979-01-01

The immunolabeling characteritics of Rickettsia tsutsugamushi (Gilliam strain) were examined by using a purified immunoglobulin G fraction of antibody to R. tsutsugamushi raised in rabbits. When rickettsiae in BHK-21 cells infected from yolk sac seed material were immunoferritin labeled, the binding of ferritin was found to be dense and uniform on the outer surface of the rickettsiae in disrupted host cells. Immunolabeling of purified suspensions of extracellular rickettsiae resulted in the uniform ferritin labeling of the microorganism. The immunoferritin labeling of R. tsutsugamushi during successive serial passages in BHK-21 cells revealed decreased labeling with each passage, and by the 10th passage there was no detectable labeling. However, these rickettsiae inoculated back into yolk sacs regained their immunoferritin labeling. Antibody against rickettsiae cultivated in BHK-21 cells continued labeling rickettsiae even after 9 serial passages in BHK-21 cells

The practice of jhum cultivation and its relationship to Plasmodium falciparum infection in the Chittagong Hill Districts of Bangladesh.

Science.gov (United States)

Galagan, Sean R; Prue, Chai Shwai; Khyang, Jacob; Khan, Wasif Ali; Ahmed, Sabeena; Ram, Malathi; Alam, Mohammad Shafiul; Haq, M Zahirul; Akter, Jasmin; Streatfield, Peter Kim; Glass, Gregory; Norris, Douglas E; Nyunt, Myaing Myaing; Shields, Timothy; Sullivan, David J; Sack, David A

2014-08-01

Malaria is endemic in the Chittagong Hill Districts of southeastern Bangladesh. Previous epidemiological analyses identified the agricultural practice of jhum cultivation as a potential risk factor for malaria infection. We conducted qualitative interviews with jhum cultivators and surveillance workers to describe jhum cultivation and used demographic and malaria surveillance in two study unions from May of 2010 to August of 2012 to better understand the relationship between jhum cultivation and malaria infection. Qualitative interviews revealed that jhum cultivation is conducted on remote, steep hillsides by ethnic tribal groups. Quantitative analyses found that adult jhum cultivators and individuals who live in the same residence had significantly higher incidence rates of symptomatic Plasmodium falciparum infection compared with non-cultivators. These results confirm that jhum cultivation is an independent risk factor for malaria infection and underscore the need for malaria testing and treatment services to reach remote populations in the Chittagong Hill Districts. © The American Society of Tropical Medicine and Hygiene.

Susceptibility of some oral microorganisms to chlorhexidine and paramonochlorophenol

OpenAIRE

Amorim,Crystiane Venditi Gomes do; Aun,Carlos Eduardo; Mayer,Marcia Pinto Alves

2004-01-01

Since the use of antimicrobial agents is required in endodontic therapies, this study aimed at determining the minimum inhibitory concentrations (MICs) of chlorhexidine digluconate and paramonochlorophenol (PMC) against microorganisms commonly found in endodontic infections. Both agents were tested by agar dilution tests against Pseudomonas aeruginosa, Staphylococcus aureus, Enterococcus faecalis, Escherichia coli, Candida albicans, Prevotella intermedia, Porphyromonas gingivalis, Porphyromon...

[Relationships between air conditioning, airborne microorganisms and health].

Science.gov (United States)

Parat, S; Perdrix, A; Baconnier, P

1999-01-01

Concurrently with the increase of air-conditioning, potentially severe or frequent new diseases have emerged, giving rise to social and economical consequences. The first part of this work is a state of the art review of the relationships between air-conditioning, airborne microorganisms and health, through a technical, metrological and medical approach. The second part presents four studies performed in this field. Two of them deal with the relationship between airborne microorganisms and technical features of air-conditioning. Measurements performed on actual sites demonstrated the benefit of using high efficiency filters and low risk components in air-conditioning systems. The third study was aimed to look for a relationship between airborne microorganisms and sick building syndrome symptoms. Statistical analyses of individual data revealed significant associations between airborne bacteria or fungi and symptoms. These results may be the first step in determining a dose-response relationship, in order to define threshold limit values in this field. In the fourth study, the contribution of particle counting in assessing exposure to airborne microorganisms was explored by monitoring simultaneous variations of microbial and particle concentrations. The results showed that associating particle counting may allow to detect microbial variations instantaneously, and therefore improve the assessment of exposure to airborne microorganisms.

Sustainable intensification of cultivated pastures using multiple ...

African Journals Online (AJOL)

rangeland and wildlife parks) for guidelines to implementing this approach in cultivated pasture. In rangeland or natural grassland ... Keywords: animal production, biodiversity, cultivated pastures, foraging ecology, plant–herbivore interactions ...

Bioremediation of Industrial Waste Through Enzyme Producing Marine Microorganisms.

Science.gov (United States)

Sivaperumal, P; Kamala, K; Rajaram, R

Bioremediation process using microorganisms is a kind of nature-friendly and cost-effective clean green technology. Recently, biodegradation of industrial wastes using enzymes from marine microorganisms has been reported worldwide. The prospectus research activity in remediation area would contribute toward the development of advanced bioprocess technology. To minimize industrial wastes, marine enzymes could constitute a novel alternative in terms of waste treatment. Nowadays, the evidence on the mechanisms of bioremediation-related enzymes from marine microorganisms has been extensively studied. This review also will provide information about enzymes from various marine microorganisms and their complexity in the biodegradation of comprehensive range of industrial wastes. © 2017 Elsevier Inc. All rights reserved.

Atmospheric Sampling of Microorganisms with UAS

Science.gov (United States)

Schmale, D. G., III

2017-12-01

Many microorganisms relevant to crops, domestic animals, and humans are transported over long distances through the atmosphere. Some of these atmospheric microbes catalyze the freezing of water at higher temperatures and facilitate the onset of precipitation. A few have crossed continents. New technologies are needed to study the movement of microorganisms in the atmosphere. We have used unmanned aircraft systems (UAS) to study the transport of microorganisms tens to hundreds of meters above the ground. These UAS are equipped with unique devices for collecting microbes in the atmosphere during flight. Autonomous systems enable teams of UAS to perform complex atmospheric sampling tasks, and coordinate flight missions with one another. Data collected with UAS can be used to validate and improve disease forecasting models along highways in the sky, connecting transport scales across farms, states, and continents. Though terrestrial environments are often considered a major contributor to atmospheric microbial aerosols, little is known about aquatic sources of microbial aerosols. Droplets containing microorganisms can aerosolize from the water surface, liberating them into the atmosphere. We are using teams of unmanned surface vehicles (USVs) and UAS to study the aerosolization of microbes from aquatic environments. Controlled flume studies using highspeed video have allowed us to observe unique aerosolization phenomena that can launch microbes out of the water and into the air. Unmanned systems may be used to excite the next generation of biologists and engineers, and raise important ethical considerations about the future of human-robot interactions.

Bisphenol A Removal by Submerged Macrophytes and the Contribution of Epiphytic Microorganisms to the Removal Process.

Science.gov (United States)

Zhang, Guosen; Wang, Yu; Jiang, Jinhui; Yang, Shao

2017-06-01

Bisphenol A (BPA), a typical endocrine disruptor, has been found in global aquatic environments, causing great concern. The capabilities of five common submerged macrophytes to remove BPA from water and the contributions of epiphytic microorganisms were investigated. Macrophytes removed 62%-100% of total BPA (5 mg/L) over 12 days; much higher rates than that observed in the control (2%, F = 261.511, p = 0.000). Ceratophyllum demersum was the most efficient species. C. demersum samples from lakes with different water qualities showed no significant differences in BPA removal rates. Moreover, removal, inhibition or re-colonization of epiphytic microorganisms did not significantly change the BPA removal rates of C. demersum. Therefore, the contributions of epiphytic microorganisms to the BPA removal process were negligible. The rate of BPA accumulation in C. demersum was 0.1%, indicating that BPA was mainly biodegraded by the macrophyte. Hence, submerged macrophytes, rather than epiphytic microorganisms, substantially contribute to the biodegradation of BPA in water.

Study of capability of microorganisms to develop on construction materials used in space objects

Science.gov (United States)

Rakova, N.; Svistunova, Y.; Novikova, N.

One of the most topical issues nowadays in the whole set of space research is the study of microbiological risks (medical, technical, technological). Experiments held onboard MIR station and International Space Station (ISS) clearly demonstrated capacity of microorganisms to contaminate the environment, equipment and belonging of habitual compartments of space objects. In this connection microorganisms-biodestructors play an important role. In their vital functioning they are capable of causing biological damage of different polymers, biocorrosion of metals which can lead to serious difficulties in performing long-term flights, namely the planned mission to Mars. Our purpose was to study capability of growth and reproduction of microorganisms on construction materials of various chemical composition as the first stage of biodestruction process. In our research we used "flight" strains of bacteria (Bacillus subtilus, Staphylococcus epidermidis, Staphylococcus saprophyticus, Pseudomonas pumilus etc.) recovered from the ISS environment in several missions. For control we used "earth" bacteria species with typical properties. To model the environment of the ISS we took construction materials which are widely used in the interior and equipment of the ISS. The results we've obtained show that some microorganisms are capable of living and reproducing themselves on construction materials and their capability is more pronounced than that of the "earth" species. The best capability for growth and reproduction was characteristic of Bacillus subtilus.

Mixotrophic cultivation of microalgae for biodiesel production: status and prospects.

Science.gov (United States)

Wang, Jinghan; Yang, Haizhen; Wang, Feng

2014-04-01

Biodiesel from microalgae provides a promising alternative for biofuel production. Microalgae can be produced under three major cultivation modes, namely photoautotrophic cultivation, heterotrophic cultivation, and mixotrophic cultivation. Potentials and practices of biodiesel production from microalgae have been demonstrated mostly focusing on photoautotrophic cultivation; mixotrophic cultivation of microalgae for biodiesel production has rarely been reviewed. This paper summarizes the mechanisms and virtues of mixotrophic microalgae cultivation through comparison with other major cultivation modes. Influencing factors of microalgal biodiesel production under mixotrophic cultivation are presented, development of combining microalgal biodiesel production with wastewater treatment is especially reviewed, and bottlenecks and strategies for future commercial production are also identified.

Seed constraint to cultivation and productivity of African indigenous ...

African Journals Online (AJOL)

Non-availability of improved seeds constitutes a major constraint to the cultivation and productivity of the indigenous leaf vegetables (ILVs) of Africa. Research on African ILVs has focused mainly on the ethnobotany, collection, preservation, and the assessment of food value and chemical composition of the ILVs. No serious ...

A Brazilian population of the asexual fungus-growing ant Mycocepurus smithii (Formicidae, Myrmicinae, Attini cultivates fungal symbionts with gongylidia-like structures.

Directory of Open Access Journals (Sweden)

Virginia E Masiulionis

Full Text Available Attine ants cultivate fungi as their most important food source and in turn the fungus is nourished, protected against harmful microorganisms, and dispersed by the ants. This symbiosis evolved approximately 50-60 million years ago in the late Paleocene or early Eocene, and since its origin attine ants have acquired a variety of fungal mutualists in the Leucocoprineae and the distantly related Pterulaceae. The most specialized symbiotic interaction is referred to as "higher agriculture" and includes leafcutter ant agriculture in which the ants cultivate the single species Leucoagaricus gongylophorus. Higher agriculture fungal cultivars are characterized by specialized hyphal tip swellings, so-called gongylidia, which are considered a unique, derived morphological adaptation of higher attine fungi thought to be absent in lower attine fungi. Rare reports of gongylidia-like structures in fungus gardens of lower attines exist, but it was never tested whether these represent rare switches of lower attines to L. gonglyphorus cultivars or whether lower attine cultivars occasionally produce gongylidia. Here we describe the occurrence of gongylidia-like structures in fungus gardens of the asexual lower attine ant Mycocepurus smithii. To test whether M. smithii cultivates leafcutter ant fungi or whether lower attine cultivars produce gongylidia, we identified the M. smithii fungus utilizing molecular and morphological methods. Results shows that the gongylidia-like structures of M. smithii gardens are morphologically similar to gongylidia of higher attine fungus gardens and can only be distinguished by their slightly smaller size. A molecular phylogenetic analysis of the fungal ITS sequence indicates that the gongylidia-bearing M. smithii cultivar belongs to the so-called "Clade 1"of lower Attini cultivars. Given that M. smithii is capable of cultivating a morphologically and genetically diverse array of fungal symbionts, we discuss whether asexuality of

Enhancement of uranium-accumulating ability of microorganisms by irradiation

Energy Technology Data Exchange (ETDEWEB)

Sakaguchi, Takashi; Nakajima, Akira; Tsuruta, Takehiko [Miyazaki Medical Coll., Kiyotake (Japan)

1998-01-01

Some microorganisms having excellent ability to accumulate uranium were isolated, from soil and water systems in and around the Ningyo-toge Station of Power Reactor and Nuclear Fuel Development Corporation. The enhancement of uranium-accumulating ability of microorganisms by electron-beam irradiation was examined, and the ability of JW-046 was increased 3-5% by the irradiation. The irradiation affect the growth of some of microorganisms tested. (author)

Microbial communication leading to the activation of silent fungal secondary metabolite gene clusters

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Tina eNetzker

2015-04-01

Full Text Available Microorganisms form diverse multispecies communities in various ecosystems. The high abundance of fungal and bacterial species in these consortia results in specific communication between the microorganisms. A key role in this communication is played by secondary metabolites (SMs, which are also called natural products. Recently, it was shown that interspecies ‘talk’ between microorganisms represents a physiological trigger to activate silent gene clusters leading to the formation of novel SMs by the involved species. This review focuses on mixed microbial cultivation, mainly between bacteria and fungi, with a special emphasis on the induced formation of fungal SMs in co-cultures. In addition, the role of chromatin remodeling in the induction is examined, and methodical perspectives for the analysis of natural products are presented. As an example for an intermicrobial interaction elucidated at the molecular level, we discuss the specific interaction between the filamentous fungi Aspergillus nidulans and Aspergillus fumigatus with the soil bacterium Streptomyces rapamycinicus, which provides an excellent model system to enlighten molecular concepts behind regulatory mechanisms and will pave the way to a novel avenue of drug discovery through targeted activation of silent SM gene clusters through co-cultivations of microorganisms.

The detection of microorganisms related to urethritis from the oral cavity of male patients with urethritis.

Science.gov (United States)

Le, Phuong Thi; Hamasuna, Ryoichi; Matsumoto, Masahiro; Furubayashi, Keiichi; Hatanaka, Masayuki; Kawai, Shuichi; Yamaguchi, Takamasa; Uehara, Kazutaka; Murakami, Norihiko; Yoshioka, Masaru; Nakayama, Ken; Shiono, Yutaka; Muraoka, Keisuke; Suzuki, Masahiko; Fujimoto, Naohiro; Matsumoto, Tetsuro

2017-10-01

To investigate the presence of microorganisms related to urethritis in the oral cavity of male patients with urethritis and the efficacies of antimicrobials for urethritis on microorganisms in the oral cavity. Ninety-two male patients with urethritis and 17 male controls participated to this study at 12 urology clinics in Japan between March 2014 and March 2015. The first voided urine (FVU) and oral wash fluid (OWF) specimens were collected from the participants. The microorganisms in both FVU and OWF specimens were detected by nucleic acid amplification tests at the first and follow-up visit. The efficacies of antimicrobials were evaluated after 1-4 weeks treatment completion. In a total of 92 male patients with urethritis, Neisseria gonorrhoeae, Chlamydia trachomatis, Mycoplasma hominis, Mycoplasma genitalium, Ureaplasma urealyticum, Ureaplasma parvum, Trichomonas vaginalis and Gardnerella vaginalis were detected from OWF specimens of 12%, 3%, 9%, 0%, 12%, 3%, 3% and 15% patients, respectively. From control males, no microorganism was detected from OWF specimens. Among 46 patients who could be evaluated for antimicrobial efficacies at the follow-up visit, 5 in FVU specimens failed by azithromycin (AZM), and 10 failed in OWF specimens (7 by AZM, 2 by tetracycline, 1 by spectinomycin; p = 0.002). Especially, a high prevalence of G. vaginalis remained positive after treatment for urethritis in the oral cavity. Microorganisms related to urethritis were detected in the oral cavity of male patients with urethritis. Antimicrobials that focused on urethritis, especially AZM regimen seem to be less effective for microorganisms in the oral cavity. Copyright © 2017 Japanese Society of Chemotherapy and The Japanese Association for Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

Multiorganismal insects: diversity and function of resident microorganisms.

Science.gov (United States)

Douglas, Angela E

2015-01-07

All insects are colonized by microorganisms on the insect exoskeleton, in the gut and hemocoel, and within insect cells. The insect microbiota is generally different from microorganisms in the external environment, including ingested food. Specifically, certain microbial taxa are favored by the conditions and resources in the insect habitat, by their tolerance of insect immunity, and by specific mechanisms for their transmission. The resident microorganisms can promote insect fitness by contributing to nutrition, especially by providing essential amino acids, B vitamins, and, for fungal partners, sterols. Some microorganisms protect their insect hosts against pathogens, parasitoids, and other parasites by synthesizing specific toxins or modifying the insect immune system. Priorities for future research include elucidation of microbial contributions to detoxification, especially of plant allelochemicals in phytophagous insects, and resistance to pathogens; as well as their role in among-insect communication; and the potential value of manipulation of the microbiota to control insect pests.

Overcoming of Soil Contamination with Pesticides in Forest Nurseries Using the Activity of Microorganisms

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Irina A. Freiberg

2010-01-01

Full Text Available The use of pesticides during cultivation of pine seedlings in forest nurseries resultsin the formation two phenotypes of teratomorph seedlings – conditionally normal andabnormal. Growing forest cultures from teratomorph seedlings leads to their low survivalrate. It is known that pesticides and their metabolic products can remain in soil for manyyears. It is therefore impossible to rely only on natural degradation of pesticides in soil. Apromising way of removing pesticides from soil is their microbiological decomposition.This method is preferable because there is a meliorative organic substance not far from forestnurseries – i.e. forest litter rich in microorganisms. The purpose of these experimentswas to examine the influence of forest litter applied on pesticide decomposition in soil andmorphology of pine seedlings. The rates of forest litter that were most effective in decompositionof pesticides and the activity of microbial communities in litter, depending on foreststand structure, were determined. Estimation of that action was based on the morphologyof seedlings (rate of pine seedlings with normal, conditionally normal and abnormalphenotypes, intensity of CO2 emission from soil and catalase activity, which correlates withthe number of soil microorganisms. The results of these experiments showed the mosteffective activity of forest litter at the application rate of 20 kg/m2. The number of seedlingswith normal phenotype rose from 32% up to 40%. Besides, it was noted that saprophyteswere most effective in pine forest litter, which is characterized by a more acid reaction ofsoil solution, while most others were rich in fungi. The highest number of normal phenotypeseedlings, intensity of CO2 emission and activity of soil catalase were correlated withthe microbiological activity of the applied pine forest litter.

Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms

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Claire eBertelli

2012-08-01

Full Text Available Based on Darwin’s concept of the tree of life, vertical inheritance was thought to be dominant, and mutations, deletions and duplication were streaming the genomes of living organisms. In the current genomic era, increasing data indicated that both vertical and lateral gene inheritance interact in space and time to trigger genome evolution, particularly among microorganisms sharing a given ecological niche. As a paradigm to their diversity and their survival in a variety of cell types, intracellular microorganisms, and notably intracellular bacteria, were considered as less prone to lateral genetic exchanges. Such specialized microorganisms generally have a smaller gene repertoire because they do rely on their host’s factors for some basic regulatory and metabolic functions. Here we review events of lateral gene transfer (LGT that illustrate the genetic exchanges among intra-amoebal microorganisms or between the microorganism and its amoebal host. We tentatively investigate the functions of laterally transferred genes in the light of the interaction with their host as they should confer a selective advantage and success to the amoeba-resisting microorganisms.

Endotypes of difficult-to-control asthma in inner-city African American children.

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K R Brown

Full Text Available African Americans have higher rates of asthma prevalence, morbidity, and mortality in comparison with other racial groups. We sought to characterize endotypes of childhood asthma severity in African American patients in an inner-city pediatric asthma population. Baseline blood neutrophils, blood eosinophils, and 38 serum cytokine levels were measured in a sample of 235 asthmatic children (6-17 years enrolled in the NIAID (National Institute of Allergy and Infectious Diseases-sponsored Asthma Phenotypes in the Inner City (APIC study (ICAC (Inner City Asthma Consortium-19. Cytokines were quantified using a MILLIPLEX panel and analyzed on a Luminex analyzer. Patients were classified as Easy-to-Control or Difficult-to-Control based on the required dose of controller medications over one year of prospective management. A multivariate variable selection procedure was used to select cytokines associated with Difficult-to-Control versus Easy-to-Control asthma, adjusting for age, sex, blood eosinophils, and blood neutrophils. In inner-city African American children, 12 cytokines were significant predictors of Difficult-to-Control asthma (n = 235. CXCL-1, IL-5, IL-8, and IL-17A were positively associated with Difficult-to-Control asthma, while IL-4 and IL-13 were positively associated with Easy-to-Control asthma. Using likelihood ratio testing, it was observed that in addition to blood eosinophils and neutrophils, serum cytokines improved the fit of the model. In an inner-city pediatric population, serum cytokines significantly contributed to the definition of Difficult-to-Control asthma endotypes in African American children. Mixed responses characterized by TH2 (IL-5 and TH17-associated cytokines were associated with Difficult-to-Control asthma. Collectively, these data may contribute to risk stratification of Difficult-to-Control asthma in the African American population.

Application of 13C-stable isotope probing to identify RDX-degrading microorganisms in groundwater

International Nuclear Information System (INIS)

Cho, Kun-Ching; Lee, Do Gyun; Roh, HyungKeun; Fuller, Mark E.; Hatzinger, Paul B.; Chu, Kung-Hui

2013-01-01

We employed stable isotope probing (SIP) with 13 C-labeled hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) to identify active microorganisms responsible for RDX biodegradation in groundwater microcosms. Sixteen different 16S rRNA gene sequences were derived from microcosms receiving 13 C-labeled RDX, suggesting the presence of microorganisms able to incorporate carbon from RDX or its breakdown products. The clones, residing in Bacteroidia, Clostridia, α-, β- and δ-Proteobacteria, and Spirochaetes, were different from previously described RDX degraders. A parallel set of microcosms was amended with cheese whey and RDX to evaluate the influence of this co-substrate on the RDX-degrading microbial community. Cheese whey stimulated RDX biotransformation, altered the types of RDX-degrading bacteria, and decreased microbial community diversity. Results of this study suggest that RDX-degrading microorganisms in groundwater are more phylogenetically diverse than what has been inferred from studies with RDX-degrading isolates. Highlights: •SIP identified sixteen groundwater bacteria capable of using RDX and/or its metabolites as a carbon source. •The RDX degraders in groundwater are phylogenetically diverse and different from known RDX degraders. •Cheese whey induced community shift and altered diversity of the RDX-degrading microorganisms over time. -- RDX-degrading bacteria in contaminated groundwater, identified by SIP with 13 C-labeled RDX, are phylogenetically diverse and different from known RDX degraders

Exposure to airborne microorganisms and endotoxin in herb processing plants.

Science.gov (United States)

Dutkiewicz, J; Krysińska-Traczyk, E; Skórska, C; Sitkowska, J; Prazmo, Z; Golec, M

2001-01-01

value of 4 mg/m3. The concentrations of airborne endotoxin ranged within 0.2-2681.0 microg/m3 (median 16.0 microg/m3), exceeding at all sampling sites the suggested OEL value of 0.1 microg/m3. In conclusion, the workers of herb processing plants could be exposed to large concentrations of airborne microorganisms, dust and endotoxin posing a risk of work-related respiratory disease.

The evaluation of cultivable microbiota profile in patients with secondary endodontic infection before and after photo-activated disinfection.

Science.gov (United States)

Pourhajibagher, Maryam; Ghorbanzadeh, Roghayeh; Parker, Steven; Chiniforush, Nasim; Bahador, Abbas

2017-06-01

Secondary/persistent endodontic infection can be the outcome of failure of endodontic treatment. Photo-activated disinfection (PAD) can be a useful adjunct to mechanical and antimicrobial agents in eliminating endopathogenic microorganisms. In this study, we evaluated the effect of PAD on diversity and count of microbiota related to secondary/persistent endodontic infections. Root canal samples were taken using sterile paper points from the root canals of 14 patients with secondary/persistent endodontic infections after removing the root-canal filling materials. PAD was performed on teeth with toluidine blue O (TBO) in combination with diode laser. Then re-sampling was conducted from the canal root using sterile paper points and transferred to transport medium. The samples were plated and pure cultures of the target microorganisms were then isolated and identified by analytical profile index (API ® 20A) assays and 16S ribosomal RNA gene sequencing. Before TBO-PAD, a total of 31 cultivable isolates could be retrieved; 25.8% of the isolated species were obligate anaerobic or microphilics including Veillonella parvula, Porphyromonas gingivalis, Aggregatibacter actinomycetemcomitans, Propionibacterium acnes, and Lactobacillus acidophilus, and 74.2% of the isolated species were facultative anaerobic such as Enterococcus faecalis, Actinomyces naeslundii, L. rhamnosus, L. casei, Streptococcus sanguinis, S. mitis, and Candida albicans. According to this in vivo study, the diversity and count of microbiota in root canal-treated teeth were decreased after TBO-PAD, so that E. faecalis, V. parvula, and C. albicans were the microorganisms that recovered after PAD. TBO-PAD is an effective approach that exhibited anti-microbial potential activity against microbiota involved in secondary/persistent endodontic infection. Copyright © 2017 Elsevier B.V. All rights reserved.

Application of microorganism to in-situ leaching mining

International Nuclear Information System (INIS)

Yu, Runlan; Sato, Kazuhiko; Nagara, Shuichi; Yamana, Satoshi

1998-01-01

In-situ leaching (ISL) technique has come into the spotlight recently because of its low production costs and low environmental impact. In China, development and application of economical ISL techniques are also being studied. To design a pilot scale ISL 'bioreactor' in China, applicability of microorganisms to ISL mining was evaluated at Ningyo Toge Works as a part of Scientist Exchange Program of the Science and Technology Agency. An overview of the indirect bio-ISL method with iron oxidizing bacteria, Thiobacillus ferroxidans (TF), and results from experiment to determine factors for the ISL 'bioreactor' are discussed. (author)

Properties of thermophilic microorganisms

International Nuclear Information System (INIS)

Ljungdahl, L.G.

1984-01-01

Microorganisms are called thermophilic or extreme thermophilic (caldo-active) if they grow and reproduce over 47 0 C and 70 0 C, respectively. A survey of growth characteristics of thermophiles is presented and it includes those which also live at extreme pH. The prevalent but not completely emcompassing theory of the ability of thermophiles to grow at high temperatures is that they have macromolecules and cell organelles with high thermostability. Work on some proteins and cell organelles from thermophiles is reviewed. The thermostabilities of these components are compared with those of the living cells, and factors which may govern optimum as well as minimum growth temperatures of microorganisms are discussed. Examples are from the literature but also include enzymes involved in tetrahydrofolate metabolism and other proteins of acetogenic therhmophilic bacteria which are presently studied in the author's laboratory

Curriculum-based library instruction from cultivating faculty relationships to assessment

CERN Document Server

Blevins, Amy

2014-01-01

Curriculum-Based Library Instruction: From Cultivating Faculty Relationships to Assessment highlights the movement beyond one-shot instruction sessions, specifically focusing on situations where academic librarians have developed curriculum based sessions and/or become involved in curriculum committees.

A Sensitive and Rapid Method to Determine the Adhesion Capacity of Probiotics and Pathogenic Microorganisms to Human Gastrointestinal Mucins

Directory of Open Access Journals (Sweden)

Bélinda Ringot-Destrez

2018-05-01

Full Text Available Mucus is the habitat for the microorganisms, bacteria and yeast that form the commensal flora. Mucins, the main macromolecules of mucus, and more specifically, the glycans that cover them, play essential roles in microbial gastrointestinal colonization. Probiotics and pathogens must also colonize mucus to have lasting positive or deleterious effects. The question of which mucin-harboured glycan motifs favour the adhesion of specific microorganisms remains very poorly studied. In the current study, a simple test based on the detection of fluorescent-labeled microorganisms raised against microgram amounts of mucins spotted on nitrocellulose was developed. The adhesion of various probiotic, commensal and pathogenic microorganisms was evaluated on a panel of human purified gastrointestinal mucins and compared with that of commercially available pig gastric mucins (PGM and of mucins secreted by the colonic cancer cell line HT29-MTX. The latter two proved to be very poor indicators of adhesion capacity on intestinal mucins. Our results show that the nature of the sialylated cores of O-glycans, determined by MALDI MS-MS analysis, potentially enables sialic acid residues to modulate the adhesion of microorganisms either positively or negatively. Other identified factors affecting the adhesion propensity were O-glycan core types and the presence of blood group motifs. This test should help to select probiotics with enhanced adhesion capabilities as well as deciphering the role of specific mucin glycotopes on microbial adhesion.

Advancing metabolic engineering through systems biology of industrial microorganisms.

Science.gov (United States)

Dai, Zongjie; Nielsen, Jens

2015-12-01

Development of sustainable processes to produce bio-based compounds is necessary due to the severe environmental problems caused by the use of fossil resources. Metabolic engineering can facilitate the development of highly efficient cell factories to produce these compounds from renewable resources. The objective of systems biology is to gain a comprehensive and quantitative understanding of living cells and can hereby enhance our ability to characterize and predict cellular behavior. Systems biology of industrial microorganisms is therefore valuable for metabolic engineering. Here we review the application of systems biology tools for the identification of metabolic engineering targets which may lead to reduced development time for efficient cell factories. Finally, we present some perspectives of systems biology for advancing metabolic engineering further. Copyright © 2015 Elsevier Ltd. All rights reserved.

Production of bio-fertilizer from microwave vacuum pyrolysis of waste palm shell for cultivation of oyster mushroom (Pleurotus ostreatus

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Nam Wai Lun

2017-01-01

Full Text Available Microwave vacuum pyrolysis of waste palm shell (WPS was performed to produce biochar, which was then tested as bio-fertilizer in growing Oyster mushroom (Pleurotus ostreatus. The pyrolysis approach generated a biochar containing a highly porous structure with a high BET surface area (up to 1250 m2/g and a low moisture content (≤ 10 wt%, exhibiting desirable adsorption properties to be used as bio-fertilizer since it can act as a housing that provides many sites on which living microorganisms (mycelium or plant-growth promoting bacteria and organic nutrients can be attached or adsorbed onto. This could in turn stimulate plant growth by increasing the availability and supply of nutrients to the targeted host plant. The results from growing Oyster mushroom using the biochar record an impressive growth rate and a monthly production of up to about 550 g of mushroom. The shorter time for mycelium growth on whole baglog (30 days and the highest yield of Oyster mushroom (550 g was obtained from the cultivation medium added with 20 g of biochar. Our results demonstrate that the biochar-based bio-fertilizer produce from microwave vacuum pyrolysis of WPS show exceptional promise as an alternative growing substrate for mushroom cultivation.

Production of bio-fertilizer from microwave vacuum pyrolysis of waste palm shell for cultivation of oyster mushroom (Pleurotus ostreatus)

Science.gov (United States)

Lun Nam, Wai; Huan Su, Man; Phang, Xue Yee; Chong, Min Yee; Keey Liew, Rock; Ma, Nyuk Ling; Lam, Su Shiung

2017-11-01

Microwave vacuum pyrolysis of waste palm shell (WPS) was performed to produce biochar, which was then tested as bio-fertilizer in growing Oyster mushroom (Pleurotus ostreatus). The pyrolysis approach generated a biochar containing a highly porous structure with a high BET surface area (up to 1250 m2/g) and a low moisture content (≤ 10 wt%), exhibiting desirable adsorption properties to be used as bio-fertilizer since it can act as a housing that provides many sites on which living microorganisms (mycelium or plant-growth promoting bacteria) and organic nutrients can be attached or adsorbed onto. This could in turn stimulate plant growth by increasing the availability and supply of nutrients to the targeted host plant. The results from growing Oyster mushroom using the biochar record an impressive growth rate and a monthly production of up to about 550 g of mushroom. The shorter time for mycelium growth on whole baglog (30 days) and the highest yield of Oyster mushroom (550 g) was obtained from the cultivation medium added with 20 g of biochar. Our results demonstrate that the biochar-based bio-fertilizer produce from microwave vacuum pyrolysis of WPS show exceptional promise as an alternative growing substrate for mushroom cultivation.

Attitudes of cannabis growers to regulation of cannabis cultivation under a non-prohibition cannabis model.

Science.gov (United States)

Lenton, Simon; Frank, Vibeke A; Barratt, Monica J; Dahl, Helle Vibeke; Potter, Gary R

2015-03-01

How cannabis cultivation is dealt with under various examples of cannabis legalization or regulation is an important consideration in design of such schemes. This study aimed to (i) investigate support among current or recent cannabis growers, for various potential policy options for cannabis cultivation if prohibition were repealed, and (ii) explore the support for these options across countries, scale of growing operations, demographics, drug use and cannabis supply involvement variables. This study utilized data from the online web survey of largely 'small-scale' cannabis cultivators, aged 18yrs and over, in eleven countries conducted by the Global Cannabis Cultivation Research Consortium (GCCRC). Data from 1722 current and recent cannabis growers in Australia, Denmark and the UK, who were all asked about policy, were included in the analysis. It investigated support for various frameworks for cultivation: (no regulation (free market); adult only; growing licenses; restrictions on plant numbers; licensed business-only sale; approved commercial growing; etc.). Among current growers, support for these options were compared across countries, across scale of growing operations, and by demographics, drug use and crime variables. Although there were some between country differences in support for the various policy options, what was striking was the similarity of the proportions for each of the eight most popular policy options. Among current growers, many of these positions were predicted by demographic, drug use and cannabis growing variables which were conceptually congruent with these positions. The results have relevance for the provisions regarding cannabis cultivation in the design of new non-prohibitionist models of cannabis which are increasingly under consideration. It should be of interest to policy makers, drug policy researchers, law enforcement and cannabis cultivators. Copyright © 2014 Elsevier B.V. All rights reserved.

[Ants as carriers of microorganisms in hospital environments].

Science.gov (United States)

Pereira, Rogério Dos Santos; Ueno, Mariko

2008-01-01

Concern exists regarding the real possibility of public health threats caused by pathogenic agents that are carried by urban ants. The present study had the objective of isolating and identifying the microorganisms that are associated with ants in hospital environments. One hundred and twenty-five ants of the same species were collected from different units of a university hospital. Each ant was collected using a swab soaked with physiological solution and was transferred to a tube containing brain heart infusion broth and incubated at 35 degrees C for 24 hours. From each tube, with growth, inoculations were made into specific culturing media, to isolate any microorganisms. The ants presented a high capacity for carrying microorganism groups: spore-producing Gram-positive bacilli 63.5%, Gram-negative bacilli 6.3%, Gram-positive cocci 23.1%, filamentous fungi 6.7% and yeast 0.5%. Thus, it can be inferred that ants may be one of the agents responsible for disseminating microorganisms in hospital environments.

Influence of microorganisms on the alteration of glasses

International Nuclear Information System (INIS)

Besnainou, B.; Libert, M.F.

1997-01-01

Under specific conditions, microorganisms may enhance the alteration process of basaltic glass. However bacterial activity in the near field of a glass container would be possible only in environmental conditions provide nutrients and energetic substrates for bacterial growth. Depending of these conditions, microorganisms can: - modify the pH or the medium, - consume or produce soluble organic acids. To qualify the long term behaviour of glass, in presence of microorganisms, a qualitative and quantitative estimation of microbial activity potentialities and their consequences is needed. This must be achieved in studying the availability of the chemical species in the environment. (authors)

The global dispersion of pathogenic microorganisms by dust storms and its relevance to agriculture: Chapter 1

Science.gov (United States)

Gonzalez-Martin, Cristina; Teigell-Perez, Nuria; Valladares, Basilio; Griffin, Dale W.

2014-01-01

Dust storms move an estimated 500–5000 Tg of soil through Earth’s atmosphere every year. Dust-storm transport of topsoils may have positive effects such as fertilization of aquatic and terrestrial ecosystems and the evolution of soils in proximal and distal environments. Negative effects may include the stripping of nutrient-rich topsoils from source regions, sandblasting of plant life in downwind environments, the fertilization of harmful algal blooms, and the transport of toxins (e.g., metals, pesticides, herbicides, etc.) and pathogenic microorganisms. With respect to the long-range dispersion of microorganisms and more specifically pathogens, research is just beginning to demonstrate the quantity and diversity of organisms that can survive this type of transport. Most studies to date have utilized different assays to identify microorganisms and microbial communities using predominately culture-based, and more recently nonculture-based, methodologies. There is a clear need for international-scale research efforts that apply standardized methods to advance this field of science. Here we present a review of dust-borne microorganisms with a focus on their relevance to agronomy.

Dynamic size spectrometry of airborne microorganisms: Laboratory evaluation and calibration

Science.gov (United States)

Qian, Yinge; Willeke, Klaus; Ulevicius, Vidmantas; Grinshpun, Sergey A.; Donnelly, Jean

Bioaerosol samplers need to be calibrated for the microorganisms of interest. The Aerosizer, a relatively new aerodynamic size spectrometer, is shown to be a suitable dynamic instrument for the evaluation and calibration of such samplers in the laboratory, prior to their use in the field. It provides the necessary reference count against which the microbiological response of the sampler can be compared. It measures the health-significant aerodynamic diameters of microorganisms down to 0.5 μm, thus including most of the bacteria, fungi and pollen found in outdoor and indoor air environments. Comparison tests with a laser size spectrometer indicate that the suspension of microorganisms needs to be washed several times before aerosolization to avoid coating of the airborne microorganisms with nutrients and microbial slime from the suspension, and to reduce the residue particles to sizes below the lowest size of the aerosolized microorganisms.

Final Technical Report: Viral Infection of Subsurface Microorganisms and Metal/Radionuclide Transport

Energy Technology Data Exchange (ETDEWEB)

Weber, Karrie A.; Bender, Kelly S.; Li, Yusong

2013-09-28

Microbially mediated metabolisms have been identified as a significant factor either directly or indirectly impacting the fate and transport of heavy metal/radionuclide contaminants. To date microorganisms have been isolated from contaminated environments. Examination of annotated finished genome sequences of many of these subsurface isolates from DOE sites, revealed evidence of prior viral infection. To date the role that viruses play influencing microbial mortality and the resulting community structure which directly influences biogeochemical cycling in soils and sedimentary environments remains poorly understood. The objective of this exploratory study was to investigate the role of viral infection of subsurface bacteria and the formation of contaminant-bearing viral particles. This objective was approached by examining the following working hypotheses: (i) subsurface microorganisms are susceptible to viral infections by the indigenous subsurface viral community, and (ii) viral surfaces will adsorb heavy metals and radionuclides. Our results have addressed basic research needed to accomplish the BER Long Term Measure to provide sufficient scientific understanding such that DOE sites would be able to incorporate coupled physical, chemical and biological processes into decision making for environmental remediation or natural attenuation and long-term stewardship by establishing viral-microbial relationships on the subsequent fate and transport of heavy metals and radionuclides. Here we demonstrated that viruses play a significant role in microbial mortality and community structure in terrestrial subsurface sedimentary systems. The production of viral-like particles within subsurface sediments in response to biostimulation with dissolved organic carbon and a terminal electron acceptor resulted in the production of viral-like particles. Organic carbon alone did not result in significant viral production and required the addition of a terminal electron acceptor

Beta particle dose rates to micro-organisms in soil

International Nuclear Information System (INIS)

Kabir, M.; Spiers, F.W.; Iinuma, Takeshi.

1977-01-01

Studies were made to estimate the beta-particle dose rates to micro-organisms of various sizes in soil. The small insects and organisms living in soil are constantly exposed to beta-radiation arising from naturally occuring radionuclides in soil as in this case no overlying tissue shields them. The technique of measuring beta-particle dose rate consisted of using of a thin plastic scintillator to measure the pulse height distribution as the beta particle traverses the scintillator. The integrated response was determined by the number and size of the photomultiplier pulses. From the data of soil analyses it was estimated that typically about 29% of the beta particles emitted per gm. of soil were contributed by the U/Ra series, 21% by the Th series and about 50% by potassium. By combining the individual spectra of these three radionuclides in the proportion found in a typical soil, a resultant spectrum was computed representing the energy distribution of the beta particles. The dose rate received by micro-organisms of different shape and size in soil was derived from the equilibrium dose rates combined with a 'Geometrical Factor' of the organisms. For small organisms, the dose rates did not vary between the spherical and cylindrical types, but in the case of larger organisms, the dose rates were found to be greater for the spherical types of the same diameter. (auth.)

Component Analysis of Cultivated Ginseng, Red Ginseng, Cultivated Wild Ginseng, and Red Wild Ginseng Using HPLC Method

Directory of Open Access Journals (Sweden)

Jang Ho, Lee

2008-06-01

Full Text Available Objectives : The aim of this experiment is to provide an differentiation of ginseng, red ginseng, cultivated wild ginseng(CWG, and red wild ginseng(RWG through component analysis using HPLC(High Performance Liquid Chromatography, hereafter HPLC. Methods : Comparative analyses of ginsenoside Rg3, ginsenoside Rh2, and ginsenosides Rb1 and Rg1 of various ginsengs were conducted using HPLC. Results : 1. CWG was relatively heat-resistant and showed slow change in color during the process of steaming and drying, compared to cultivated ginseng. 2. Ginsenoside Rg3 was not detected in cultivated ginseng and CWG, whereas it was high in red ginseng and RWG. Ginsenoside Rg3 was more generated in red ginseng than in RWG. 3. Ginsenoside Rh2 appreared during steaming and drying of cultivated ginseng, whereas it was more increased during steaming and drying of CWG. 4. Ginsenoside Rg1 content was more increased during steaming and drying of cultivated ginseng, whereas it was more decreased during steaming and drying of CWG. 5. Ginsenoside Rb1 content was increased about 500% during steaming and drying of cultivated ginseng, whereas it was increased about 30% during steaming and drying of CWG, indicating that ginsenoside Rb1 was more generated in red ginseng than in RWG. 6. Ginsenoside Rg3 content was higher, whereas ginsenoside Rg1 content was lower in 11th RWG than in 9th RWG, indicating that ginsenoside Rg3 content was increased and Rg1 content was decreased as steaming and drying continued to proceed. Ginsenoside Rh2 and Rb1 contents began to be increased, followed by decreased after 9th steaming and drying process. Conclusions : Above experiment data can be an important indicator for the identification of ginseng, red ginseng, CWG, and RWG. And the following studies will be need for making good product using CWG.

[Status of termite-mushroom artificial domestication cultivation--a review].

Science.gov (United States)

Zhang, Yujin; Guo, Huachun; Li, Rongchun

2010-10-01

Two models of domestication and cultivation of termite-mushroom were discussed: the cultivation of termitomyces model, which method of woodrotting fungi cultivation was emphasized and the original ecological model, which multiplication of symbiotic termites was focused. The problems and possible solutions during termite-mushroom cultivation were also discussed.

Comparison of different tests to determine difficult intubation in pediatric patients

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Mehmet Turan Inal

2014-12-01

Full Text Available Background: The difficulties with airway management is the main reason for pediatric anesthesia-related morbidity and mortality. Objective: To assess the value of modified Mallampati test, Upper-Lip-Bite test, thyromental distance and the ratio of height to thyromental distance to predict difficult intubation in pediatric patients. Design: Prospective analysis. Measurements and results: Data were collected from 5 to 11 years old 250 pediatric patients requiring tracheal intubation. The Cormack and Lehane classification was used to evaluate difficult laryngoscopy. Sensitivity, specificity, positive predictive value and AUC values for each test were measured. Results: The sensitivity and specificity of modified Mallampati test were 76.92% and 95.54%, while those for ULBT were 69.23% and 97.32%. The optimal cutoff point for the ratio of height to thyromental distance and thyromental distance for predicting difficult laryngoscopy was 23.5 (sensitivity, 57.69%; specificity, 86.61% and 5.5 cm (sensitivity, 61.54%; specificity, 99.11%. The modified Mallampati was the most sensitive of the tests. The ratio of height to thyromental distance was the least sensitive test. Conclusion: These results suggested that the modified Mallampati and Upper-Lip-Bite tests may be useful in pediatric patients for predicting difficult intubation.

Methods for combating microorganisms in cooling water systems - a literature study and a market inventory

International Nuclear Information System (INIS)

Thierry, D.

1989-01-01

One of the greatest current problems in both closed and open cooling water systems is that of micro- and macro-organisms. In view of the environmental effects associated with the discharge of chemicals, the range of biocides and alternative methods for combating micro-organisms has increased during recent years. This report presents a brief description of the organisms which contribute to corrosion problems and the mechanisms associated with microbial corrosion. Thereafter descriptions are given of 15 different biocides which are used in both open and closed cooling systems. In each case, details are given of their chemical compositions and mode of action and of their effects on metals and on the environment. Finally, alternative methods of combating micro-organisms in cooling water systems are briefly described. The report also includes a survey of the biocides for cooling water systems which are available on the Swedish market. (author)

Food fermentations: Microorganisms with technological beneficial use

DEFF Research Database (Denmark)

Bourdichon, François; Casaregola, Serge; Farrokh, Choreh

2012-01-01

Microbial food cultures have directly or indirectly come under various regulatory frameworks in the course of the last decades. Several of those regulatory frameworks put emphasis on “the history of use”, “traditional food”, or “general recognition of safety”. Authoritative lists of microorganism......, legumes, cereals, beverages, and vinegar). We have also reviewed and updated the taxonomy of the microorganisms used in food fermentations in order to bring the taxonomy in agreement with the current standing in nomenclature....... cultures in practical use. However, as the focus mainly was on commercially available dairy cultures, there was an unmet need for a list with a wider scope. We present an updated inventory of microorganisms used in food fermentations covering a wide range of food matrices (dairy, meat, fish, vegetables...

Method and apparatus for detecting micro-organisms

International Nuclear Information System (INIS)

Mirsky, J.

1976-01-01

A method and apparatus is described for determining the presence and quantity of microorganisms, such as bacteria, fungi and yeast, in a given sample. The apparatus includes two sealed containers, a portion of which may be penetrated by a sharp instrument, as for example, glass vials with flexible septum tops. One container includes a radioactive nutrient medium which is capable of supporting the life process of the microorganism whose presence is being tested. The second container includes a liquid scintillation solution which absorbs the product of metabolism of the organisms. The sample is introduced into the first sealed container, for example, by means of a standard syringe. Any microorganisms present will consume the radioactive nutrient and as a result produce radioactive waste. Means are then applied to penetrate the containers and allow the flow of the radioactive metabolic product from the first container to the second container while preventing any contamination from the ambient. The liquid scintillation solution will emit light in proportion to the amount of the product of metabolism collected from the first container. This light may be detected by standard liquid scintillation counters, thus providing a qualitative and quantitative measure of the microorganism in the tested sample

Exposure of Cucurbita pepo to DDE-contamination alters the endophytic community: A cultivation dependent vs a cultivation independent approach

International Nuclear Information System (INIS)

Eevers, N.; Hawthorne, J.R.; White, J.C.; Vangronsveld, J.; Weyens, N.

2016-01-01

2,2-bis(p-chlorophenyl)-1,1-dichloro-ethylene (DDE) is the most abundant and persistent degradation product of the pesticide 2,2-bis(p-chlorophenyl)-1,1,1-trichloroethane (DDT) and is encountered in contaminated soils worldwide. Both DDE and DDT are classified as Persistent Organic Pollutants (POPs) due to their high hydrophobicity and potential for bioaccumulation and biomagnification in the food chain. Zucchini (Cucurbita pepo ssp. pepo) has been shown to accumulate high concentrations of DDE and other POPs and has been proposed as a phytoremediation tool for contaminated soils. The endophytic bacteria associated with this plant may play an important role in the remedial process. Therefore, this research focuses on changes in endophytic bacterial communities caused by the exposure of C. pepo to DDE. The total bacterial community was investigated using cultivation-independent 454 pyrosequencing, while the cultivable community was identified using cultivation-dependent isolation procedures. For both procedures, increasing numbers of endophytic bacteria, as well as higher diversities of genera were observed when plants were exposed to DDE. Several bacterial genera such as Stenotrophomonas sp. and Sphingomonas sp. showed higher abundance when DDE was present, while, for example Pseudomonas sp. showed a significantly lower abundance in the presence of DDE. These findings suggest tolerance of different bacterial strains to DDE, which might be incorporated in further investigations to optimize phytoremediation with the possible use of DDE-degrading endophytes. - Highlights: • Cucurbita pepo accumulates DDE and can be used for phytoremediation. • Phytoremediation capacity might be enhanced with endophytic bacteria. • The differences in bacterial communities without and with DDE are investigated. • Several DDE-tolerant bacteria are discovered and might be used in phytoremediation. - DDE-exposure and DDE-uptake of Cucurbita pepo lead to increases in both diversity

Differential Responses of Soil Microbial Community to Four-Decade Long Grazing and Cultivation in a Semi-Arid Grassland

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Yating He

2017-01-01

Full Text Available Grazing and cultivation are two important management practices worldwide that can cause significant soil organic carbon (SOC losses. However, it remains elusive how soil microbes have responded to soil carbon changes under these two practices. Based on a four-decade long field experiment, this study investigated the effects of grazing and cultivation on SOC stocks and microbial properties in the semi-arid grasslands of China. We hypothesize that grazing and cultivation would deplete SOC and depress microbial activities under both practices. However, our hypotheses were only partially supported. As compared with the adjacent indigenous grasslands, SOC and microbial biomass carbon (MBC were decreased by 20% or more under grazing and cultivation, which is consistent with the reduction of fungi abundance by 40% and 71%, respectively. The abundance of bacteria and actinomycetes was decreased under grazing but increased under cultivation, which likely enhanced microbial diversity in cultivation. Invertase activity decreased under the two treatments, while urease activity increased under grazing. These results suggest that nitrogen fertilizer input during cultivation may preferentially favor bacterial growth, in spite of SOC loss, due to rapid decomposition, while overgrazing may deteriorate the nitrogen supply to belowground microbes, thus stimulating the microbial production of nitrogen acquisition enzymes. This decade-long study demonstrated differential soil microbial responses under grazing and cultivation and has important applications for better management practices in the grassland ecosystem.

Synergistic interface behavior of strontium adsorption using mixed microorganisms.

Science.gov (United States)

Hu, Wenyuan; Dong, Faqin; Yang, Guangmin; Peng, Xin; Huang, Xiaojun; Liu, Mingxue; Zhang, Jing

2017-08-10

The proper handling of low-level radioactive waste is crucial to promote the sustainable development of nuclear power. Research into the mechanism for interactions between bacterium and radionuclides is the starting point for achieving successful remediation of radionuclides with microorganisms. Using Sr(II) as a simulation radionuclide and the mixed microorganisms of Saccharomyces cerevisiae and Bacillus subtilis as the biological adsorbent, this study investigates behavior at the interface between Sr(II) and the microorganisms as well as the mechanisms governing that behavior. The results show that the optimal ratio of mixed microorganisms is S. cerevisiae 2.0 g L -1 to B. subtilis 0.05 g L -1 , and the optimal pH is about 6.3. Sr(II) biosorption onto the mixed microorganisms is spontaneous and endothermic in nature. The kinetics and the equilibrium isotherm data of the biosorption process can be described with pseudo-second-order equation and the Langmuir isotherm equation, respectively. The key interaction between the biological adsorbent and Sr(II) involves shared electronic pairs arising from chemical reactions via bond complexation or electronic exchange, and spectral and energy spectrum analysis show that functional groups (e.g., hydroxyl, carboxyl, amino, amide) at the interface between the radionuclide and the mixed microorganisms are the main active sites of the interface reactions.

Soilless cultivation system for functional food crops

International Nuclear Information System (INIS)

Ahamad Sahali Mardi; Shyful Azizi Abdul Rahman; Ahmad Nazrul Abd Wahid; Abdul Razak Ruslan; Hazlina Abdullah

2007-01-01

This soilless cultivation system is based on the fertigation system and cultivation technologies using Functional Plant Cultivation System (FPCS). EBARA Japan has been studying on the cultivation conditions in order to enhance the function of decease risk reduction in plants. Through the research and development activities, EBARA found the possibilities on the enhancement of functions. Quality and quantity of the products in term of bioactive compounds present in the plants may be affected by unforeseen environmental conditions, such as temperature, strong light and UV radiation. The main objective to develop this system is, to support? Functional Food Industry? as newly emerging field in agriculture business. To success the system, needs comprehensive applying agriculture biotechnologies, health biotechnologies and also information technologies, in agriculture. By this system, production of valuable bioactive compounds is an advantage, because the market size of functional food is increasing more and more in the future. (Author)

Pesticides in Soil: Effects on Microorganisms

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Ljiljana Radivojević

2007-01-01

Full Text Available Since their discovery to the present day, pesticides have been an inevitable segment of agricultural production and efforts have been made to synthesize compounds that would share a required efficacy along with selectivity, sufficient persistence on the object of protection and favourable toxicological and ecotoxicological characteristics so as to minimize their effect on the environment.When a pesticide gets into soil after application, it takes part in a number of physical, chemical and biological processes that depend not only on the compound itself, but a number of other factors as well, such as: physical, chemical and biological characteristics of soil; climatic factors, equipment used, method of application, method of storage, handling and disposal of waste, site characteristics (proximity of ground and underground waters, biodiversity and sensitivity of the environment. Microorganisms play an important role in pesticide degradation as they are able to utilize the biogenic elements from those compounds, as well as energy for their physiological processes. On the other hand, pesticides are more or less toxic substances that can have adverse effect on populations of microorganisms and prevent their development, reduce their abundance, deplete their taxonomic complexity and create communities with a lower level of diversity and reduced physiological activity.The article discusses complex interactions between pesticides and microorganisms in soil immediately after application and over the ensuing period. Data on changes in the abundance of some systematic and physiological groups of microorganisms, their microbial biomass and enzymatic activity caused under pesticide activity are discussed as indicators of these processes.

Compost supplementation with nutrients and microorganisms in composting process.

Science.gov (United States)

Sánchez, Óscar J; Ospina, Diego A; Montoya, Sandra

2017-11-01

The composting is an aerobic, microorganism-mediated, solid-state fermentation process by which different organic materials are transformed into more stable compounds. The product obtained is the compost, which contributes to the improvement of physical, chemical and microbiological properties of the soil. However, the compost usage in agriculture is constrained because of its long-time action and reduced supply of nutrients to the crops. To enhance the content of nutrients assimilable by the plants in the compost, its supplementation with nutrients and inoculation with microorganisms have been proposed. The objective of this work was to review the state of the art on compost supplementation with nutrients and the role played by the microorganisms involved (or added) in their transformation during the composting process. The phases of composting are briefly compiled and different strategies for supplementation are analyzed. The utilization of nitrogenous materials and addition of microorganisms fixing nitrogen from the atmosphere or oxidizing ammonia into more assimilable for plants nitrogenous forms are analyzed. Several strategies for nitrogen conservation during composting are presented as well. The supplementation with phosphorus and utilization of microorganisms solubilizing phosphorus and potassium are also discussed. Main groups of microorganisms relevant during the composting process are described as well as most important strategies to identify them. In general, the development of this type of nutrient-enriched bio-inputs requires research and development not only in the supplementation of compost itself, but also in the isolation and identification of microorganisms and genes allowing the degradation and conversion of nitrogenous substances and materials containing potassium and phosphorus present in the feedstocks undergoing the composting process. In this sense, most important research trends and strategies to increase nutrient content in the compost

Temporal Eukarya, Bacteria, and Archaea biodiversity during cultivation of an alkaliphilic algae, Chlorella vulgaris, in an outdoor raceway pond

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Tisza Ann Szeremy Bell

2016-01-01

Full Text Available Algal biofuels and valuable co-products are being produced in both open and closed cultivation systems. Growing algae in open pond systems may be a more economical alternative, but this approach allows environmental microorganisms to colonize the pond and potentially infect or outcompete the algal crop. In this study, we monitored the microbial community of an outdoor, open raceway pond inoculated with a high lipid-producing alkaliphilic alga, Chlorella vulgaris BA050. The strain C. vulgaris BA050 was previously isolated from Soap Lake, Washington, a system characterized by a high pH (approximately 9.8. An outdoor raceway pond (200L was inoculated with C. vulgaris and monitored for ten days and then the culture was transferred to a 2,000L raceway pond and cultivated for an additional six days. Community DNA samples were collected over the 16-day period in conjunction with water chemistry analyses and cell counts. Universal primers for the SSU rRNA gene sequences for Eukarya, Bacteria, and Archaea were used for barcoded pyrosequence determination. The environmental parameters that most closely correlated with C. vulgaris abundance were pH and phosphate. Community analyses indicated that the pond system remained dominated by the Chlorella population (93% of eukaryotic sequences, but was also colonized by other microorganisms. Bacterial sequence diversity increased over time while archaeal sequence diversity declined over the same time period. Using SparCC co-occurrence network analysis, a positive correlation was observed between C. vulgaris and Pseudomonas sp. throughout the experiment, which may suggest a symbiotic relationship between the two organisms. The putative relationship coupled with high pH may have contributed to the success of C. vulgaris. The characterization of the microbial community dynamics of an alkaliphilic open pond system provides significant insight into open pond systems that could be used to control photoautotrophic

Microbial genome-enabled insights into plant-microorganism interactions.

Science.gov (United States)

Guttman, David S; McHardy, Alice C; Schulze-Lefert, Paul

2014-12-01

Advances in genome-based studies on plant-associated microorganisms have transformed our understanding of many plant pathogens and are beginning to greatly widen our knowledge of plant interactions with mutualistic and commensal microorganisms. Pathogenomics has revealed how pathogenic microorganisms adapt to particular hosts, subvert innate immune responses and change host range, as well as how new pathogen species emerge. Similarly, culture-independent community profiling methods, coupled with metagenomic and metatranscriptomic studies, have provided the first insights into the emerging field of research on plant-associated microbial communities. Together, these approaches have the potential to bridge the gap between plant microbial ecology and plant pathology, which have traditionally been two distinct research fields.

Microorganism Utilization for Synthetic Milk

Science.gov (United States)

Morford, Megan A.; Khodadad, Christina L.; Caro, Janicce I.; Spencer, LaShelle E.; Richards, Jeffery T.; Strayer, Richard F.; Birmele, Michele N.; Wheeler, Raymond M.

2014-01-01

A desired architecture for long duration spaceflight, like aboard the International Space Station or for future missions to Mars, is to provide a supply of fresh food crops for the astronauts. However, some crops can create a high proportion of inedible plant waste. The main goal of the Synthetic Biology project, Cow in a Column, was to produce the components of milk (sugar, lipid, protein) from inedible plant waste by utilizing microorganisms (fungi, yeast, bacteria). Of particular interest was utilizing the valuable polysaccharide, cellulose, found in plant waste, to naturally fuel-through microorganism cellular metabolism- the creation of sugar (glucose), lipid (milk fat), and protein (casein) in order to produce a synthetic edible food product. Environmental conditions such as pH, temperature, carbon source, aeration, and choice microorganisms were optimized in the laboratory and the desired end-products, sugars and lipids, were analyzed. Trichoderma reesei, a known cellulolytic fungus, was utilized to drive the production of glucose, with the intent that the produced glucose would serve as the carbon source for milk fat production and be a substitute for the milk sugar lactose. Lipid production would be carried out by Rhodosporidium toruloides, yeast known to accumulate those lipids that are typically found in milk fat. Results showed that glucose and total lipid content were below what was expected during this phase of experimentation. In addition, individual analysis of six fatty acids revealed that the percentage of each fatty acid was lower than naturally produced bovine milk. Overall, this research indicates that microorganisms could be utilized to breakdown inedible solid waste to produce useable products. For future work, the production of the casein protein for milk would require the development of a genetically modified organism, which was beyond the scope of the original project. Additional trials would be needed to further refine the required

INTENSIFICATION OF JELLY MUSHROOM CULTIVATION IN PAKEM SLEMAN

OpenAIRE

Sulistiya; Retno Lantarsih; Titop Dwiwinarno*

2015-01-01

Mushroom cultivation is long enough to be a source of income for some people in Pakem, Sleman. However, cultivation techniques that do not yet meet the standards for technical, so that productivity is still low. Marketing mushrooms are limited to the traditional market. Waste mushroom has not been used well, so potentially to pollute the environment mushroom. This service activities include the provision of mushroom cultivation equipment, such as water pumps and termohygrome...

Microscale interactions between earthworms and microorganisms: a review

Directory of Open Access Journals (Sweden)

Zirbes, L.

2012-01-01

Full Text Available Microorganisms are well adapted to their soil microhabitat where they live together in consortia, interacting with other living members, including earthworms. This literature review consists of four sections that focus on microscale interactions between earthworms and microorganisms. The first part is devoted to nephridia symbiosis. Recent discoveries show that Verminephrobacter spp. is present as a symbiont in earthworm nephridia. The second section deals with earthworm food preference and focuses on the major hypotheses of foraging strategies. The third section presents evidence of gut symbionts and highlights the need for additional studies in this field. The last section of this review explains why microorganism activities are enhanced in burrows and casts of earthworms.

Principals, Trust, and Cultivating Vibrant Schools

Directory of Open Access Journals (Sweden)

Megan Tschannen-Moran

2015-03-01

Full Text Available Although principals are ultimately held accountable to student learning in their buildings, the most consistent research results have suggested that their impact on student achievement is largely indirect. Leithwood, Patten, and Jantzi proposed four paths through which this indirect influence would flow, and the purpose of this special issue is to examine in greater depth these mediating variables. Among mediating variables, we assert that trust is key. In this paper, we explore the evidence that points to the role that faculty trust in the principal plays in student learning and how principals can cultivate trust by attending to the five facets of trust, as well as the correlates of trust that mediate student learning, including academic press, collective teacher efficacy, and teacher professionalism. We argue that trust plays a role in each of the four paths identified by Leithwood, Patten, and Jantzi. Finally, we explore possible new directions for future research.

PREPARATION OF ZINC ENRICHED YEAST (SACCHAROMYCES CEREVISIAE BY CULTIVATION WITH DIFFERENT ZINC SALTS

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Ľuboš Harangozo

2012-02-01

Full Text Available The yeast Saccharomyces cerevisiae is the best known microorganism and therefore widely used in many branches of industry. This study aims to investigate the accumulation of three inorganic zinc salts. Our research presents the ability of this yeast to absorb zinc from liquid medium and such enriched biomass use as a potential source of microelements in animal and/or human nutrition. It was found that the addition of different zinc forms, i.e. zinc nitrate, zinc sulphate and zinc chloride in fixed concentrations of 0, 25, 50 and 100 mg.100 ml-1 did not affect the amount of dry yeast biomass yielded, i.e. 1.0 – 1.2 g of yeast cells from 100 ml of cultivation medium, while higher presence of zinc solutions caused significantly lower yield of yeast biomass. The highest amount of zinc in yeast cells was achieved when added in the form of zinc nitrate in concentration of 200 mg.100 ml-1 YPD medium. The increment of intracellular zinc was up to 18.5 mg.g-1 of yeast biomass.

The Third Perspective on Shifting Cultivation

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Sukanya Sharma

2017-11-01

Full Text Available ABSTRACT There are two perspectives in which the understanding of food sustainability in the world is entangled. The first perspective which believes that food sustainability can be achieved by technology presents shifting cultivation as a reflection of a lower state of cultural evolution in comparison with more sophisticated societies (O’Brien 2002.The second perspective which believes in culture, in the ‘way of life’ paradigm valorise shifting cultivation as a form of indigenous genius, representing the indigenous people as perhaps the original environmentalist (Bandy et al.1993; Conklin 1957; Grandstaff 1981; Hong 1987. The biasness of both the perspectives is well visible. The task now is to document and evaluate indigenous strategies of shifting cultivation through a process of research and development. This process involves identification of promising indigenous practices, characterization of the practices, validation of the utility of the practice for other communities, extrapolation to other locations, verification with key farmers, and wide-scale extension. This can be treated as the third perspective available to the policy makers. By this, the detrimental effects of shifting cultivation can be mitigated and productivity increased (Mali 2003.

Volatilization of Po by microorganisms at laboratory culture experiments

International Nuclear Information System (INIS)

Momoshima, N.; Ishida, A.; Yoshinaga, C.; Fukuda, A.

2005-01-01

The previous experiments proved the volatility of polonium form culture medium in which microorganisms were propagated from seed of seawater, river water or pond water, therefore we did not know what kind of species are responsible to Po volatility. To search microorganisms, which concerned with Po emission we carried out culture experiments using known microorganisms. Three microorganisms were examined; Escherichia coli K-12, Bacillus subtilis and Chromobacterium violaceum. The microorganisms were pre-cultured in LB medium at 30 degree C and a small portion of the pre-cultured was transferred to a culture bottle in which LB medium and 208 Po tracer were contained. The culture was done at 30 degree C with shaking the culture bottle and air passed through a filter was introduced. The Po volatilized was transferred into the trap vials in which scintillator for liquid scintillation counting (LSC) was contained. The Po activity was measured by LSC. All of the microorganisms examined volatilized Po but their ability was quite different each other. Highest ability was observed on Chromobacterium violaceum and then Escherichia coli K-12 followed by Bacillus subtilis, the relative magnitude of the ability was 10 2 , 10, 1, respectively. Chromobacterium violaceum and Escherichia coli K-12 showed high volatility for the first 24 h but Escherichia coli K-12 showed a decrease thereafter. However high volatility was continued on Chromobacterium violaceum during the culture. The low culture temperature suppressed Po volatility, supporting biologically mediated Po emission from the culture.

Mini-review: Inhibition of biofouling by marine microorganisms.

Science.gov (United States)

Dobretsov, Sergey; Abed, Raeid M M; Teplitski, Max

2013-01-01

Any natural or artificial substratum exposed to seawater is quickly fouled by marine microorganisms and later by macrofouling species. Microfouling organisms on the surface of a substratum form heterogenic biofilms, which are composed of multiple species of heterotrophic bacteria, cyanobacteria, diatoms, protozoa and fungi. Biofilms on artificial structures create serious problems for industries worldwide, with effects including an increase in drag force and metal corrosion as well as a reduction in heat transfer efficiency. Additionally, microorganisms produce chemical compounds that may induce or inhibit settlement and growth of other fouling organisms. Since the last review by the first author on inhibition of biofouling by marine microbes in 2006, significant progress has been made in the field. Several antimicrobial, antialgal and antilarval compounds have been isolated from heterotrophic marine bacteria, cyanobacteria and fungi. Some of these compounds have multiple bioactivities. Microorganisms are able to disrupt biofilms by inhibition of bacterial signalling and production of enzymes that degrade bacterial signals and polymers. Epibiotic microorganisms associated with marine algae and invertebrates have a high antifouling (AF) potential, which can be used to solve biofouling problems in industry. However, more information about the production of AF compounds by marine microorganisms in situ and their mechanisms of action needs to be obtained. This review focuses on the AF activity of marine heterotrophic bacteria, cyanobacteria and fungi and covers publications from 2006 up to the end of 2012.

Vibrational spectroscopy as a probe to rapidly detect, identify, and characterize micro-organisms

Science.gov (United States)

Sockalingum, Ganesh D.; Lamfarraj, Hasnae; Beljebbar, Abdelilah; Pina, Patrick; Delavenne, Marc; Witthuhn, Fabienne; Allouch, Pierre; Manfait, Michel

1999-04-01

Fast and exact identification of a great number of microorganisms is becoming a serious challenge. Differentiation and identification of microorganisms is today mainly achieved by the use of a variety of distinct techniques based on morphological, serological aspects and a set of biochemical test. Vibrational spectroscopic techniques can be complementary and useful methods in this field due to their rapidity, 'fingerprinting' capabilities, and the molecular information that they can provide. Using SERS at Ag colloids, we have conducted pilot studies to rapidly detect and identify bacterial clinical strains. Using a Raman microspectrometer equipped with a He/Ne laser, a first attempt to record SERS spectra was made on colloidal solutions. Spectra were of good quality but not very reproducible due to the movement of the microorganisms. Strains were then put in presence of Ag colloids and direct on-plate analysis was performed. Spectra were more reproducible, with diminished fluorescence, and reveal characteristic cellular-level information. Different growth conditions and colloid preparations have been tested. Pseudomonas aeruginosa and Escherichia coli clinical strains, responsible for nosocomial infections, have been our first test samples. An attempt has also been made to record SERS data from gold colloids in view of future measurement in the near-IR. Spectroscopic data are compared with ATR-FTIR results.

Genome-Wide Analysis of Host Responses to Four Different Types of Microorganisms in Bombyx Mori (Lepidoptera: Bombycidae).

Science.gov (United States)

Cheng, Tingcai; Lin, Ping; Huang, Lulin; Wu, Yuqian; Jin, Shengkai; Liu, Chun; Xia, Qingyou

2016-01-01

Several pathogenic microorganisms have been used to investigate the genome-wide transcriptional responses of Bombyx mori to infection. However, studies have so far each focused on one microorganism, and systematic genome-wide comparison of transcriptional responses to different pathogenic microorganisms has not been undertaken. Here, we surveyed transcriptional responses of B. mori to its natural bacterial, viral, and fungal pathogens, Bacillus bombyseptieus, B. mori nucleopolyhedrovirus (BmNPV), and Beauveria bassiana, respectively, and to nonpathogenic Escherichia coli, by microarray analysis. In total, the expression of 2,436, 1,804, 1,743, and 912 B. mori genes was modulated by infection with B. bombyseptieus, BmNPV, B. bassiana, and E. coli, respectively. Notably, the expression of 620, 400, 177, or 165 of these genes was only modulated by infection with B. bombyseptieus, BmNPV, B. bassiana, or E. coli, respectively. In contrast to the expression of genes related to juvenile hormone synthesis and metabolism, that of genes encoding juvenile hormone binding proteins was microorganism-specific. Three basal metabolic pathways were modulated by infection with any of the four microorganisms, and 3, 14, 5, and 2 metabolic pathways were specifically modulated by infection with B. bombyseptieus, BmNPV, B. bassiana, and E. coli, respectively. Interestingly, BmNPV infection modulated the JAK/STAT signaling pathway, whereas both the Imd and Toll signaling pathways were modulated by infection with B. bombyseptieus, B. bassiana, or E. coli These results elucidate potential molecular mechanisms of the host response to different microorganisms, and provide a foundation for further work on host-pathogen interaction. © The Author 2016. Published by Oxford University Press on behalf of the Entomological Society of America.

Cultivated Land Changes and Agricultural Potential Productivity in Mainland China

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Linlin Xiao

2015-08-01

Full Text Available With rapid and continuous population growth and the associated declining quality of cultivated land, food security in China has been attracting the attention of scholars both domestically and internationally. In recent decades, the implications of the cultivated land balance policy have promoted spatial changes of cultivated land. Estimating the agricultural potential productivity and assessing its response to cultivated land changes could provide a scientific basis for strategic decision-making concerning grain production and thus guarantee food security. In the present study, the Agro-Ecological Zone (AEZ model was applied to estimate the agricultural potential productivity. Data from the second national land survey were first applied to characterize the changes of cultivated land (by comparing the cultivated land in 2009 with that in 2012 and their influence on potential productivity in Mainland China. We propose a utilization degree of total potential productivity (UTP and its ratio coefficient (RUTP to reveal the utilization status of potential productivity and its change characteristics at the provincial level. It was found that there was a trend for cultivated land to be shifted away from cities, and the average productive capability per hectare of cultivated land declined from 7386.5 kg/ha to 6955.2 kg/ha by occupying highly productive cultivated land generally near the cities and compensating less productive cultivated land in remote areas. UTPs and RUTPs indicate a significant difference in the utilization status of potential productivity among the 31 provinces of Mainland China. Grain production with the aim of sustainable development should be strategized according to the particular facts of each province. The methods we applied can mine the impacts of cultivated land changes on potential productivity and the utilization of potential productivity effectively.