WorldWideScience

Sample records for dicotyledons

  1. The sieve element occlusion gene family in dicotyledonous plants.

    Science.gov (United States)

    Ernst, Antonia M; Rüping, Boris; Jekat, Stephan B; Nordzieke, Steffen; Reineke, Anna R; Müller, Boje; Bornberg-Bauer, Erich; Prüfer, Dirk; Noll, Gundula A

    2011-01-01

    Sieve element occlusion (SEO) genes encoding forisome subunits have been identified in Medicago truncatula and other legumes. Forisomes are structural phloem proteins uniquely found in Fabaceae sieve elements. They undergo a reversible conformational change after wounding, from a condensed to a dispersed state, thereby blocking sieve tube translocation and preventing the loss of photoassimilates. Recently, we identified SEO genes in several non-Fabaceae plants (lacking forisomes) and concluded that they most probably encode conventional non-forisome P-proteins. Molecular and phylogenetic analysis of the SEO gene family has identified domains that are characteristic for SEO proteins. Here, we extended our phylogenetic analysis by including additional SEO genes from several diverse species based on recently published genomic data. Our results strengthen the original assumption that SEO genes seem to be widespread in dicotyledonous angiosperms, and further underline the divergent evolution of SEO genes within the Fabaceae.

  2. Fermentation of the endosperm cell walls of monocotyledon and dicotyledon plant species: The relationship between cell wall characteristics and fermentability

    NARCIS (Netherlands)

    Laar, van H.; Tamminga, S.; Williams, B.A.; Verstegen, M.W.A.

    2000-01-01

    Cell walls from the endosperm of four monocotyledons (maize, wheat, rye, and rice) and four dicotyledons (soya bean, lupin, faba bean, and pea) seeds were studied to relate cell wall composition and structure with fermentation characteristics. Cell wall material was isolated from the endosperm of

  3. Factors contributing to the recalcitrance of herbaceous dicotyledons (forbs) to enzymatic deconstruction.

    Science.gov (United States)

    Jabbour, Dina; Angelos, Evan R; Mukhopadhyay, Achira; Womboldt, Alec; Borrusch, Melissa S; Walton, Jonathan D

    2014-04-05

    Many different feedstocks are under consideration for the practical production of biofuels from lignocellulosic materials. The best choice under any particular combination of economic, agronomic, and environmental conditions depends on multiple factors. The use of old fields, restored prairie, or marginal lands to grow biofuel feedstocks offers several potential benefits including minimal agronomic inputs, reduced competition with food production, and high biodiversity. However, a major component of such landscapes is often herbaceous dicotyledonous plants, also known as forbs. The potential and obstacles of using forbs as biofuel feedstocks compared to the more frequently considered grasses and woody plants are poorly understood. The factors that contribute to the yield of fermentable sugars from four representative forbs were studied in comparison with corn stover. The forbs chosen for the study were lamb's quarters (Chenopodium album), goldenrod (Solidago canadensis), milkweed (Asclepias syriaca), and Queen Anne's lace (Daucus carota). These plants are taxonomically diverse, widely distributed in northern temperate regions including the continental United States, and are weedy but not invasive. All of the forbs had lower total glucose (Glc) content from all sources (cell walls, sucrose, starch, glucosides, and free Glc) compared to corn stover (range 16.2 to 23.0% on a dry weight basis compared to 39.2% for corn stover). When digested with commercial enzyme mixtures after alkaline pretreatment, yields of Glc as a percentage of total Glc were lower for the forbs compared to corn stover. Enzyme inhibition by water-extractable compounds was not a significant contributor to the lower yields. Based on experiments with optimized cocktails of pure glycosyl hydrolases, enzyme imbalance probably accounted for much of the lower yields. Addition of xyloglucanase and α-xylosidase, two enzymes targeting Glc-containing polysaccharides that are more abundant in dicotyledonous

  4. Fitting into the Harsh Reality: Regulation of Irondeficiency Responses in Dicotyledonous Plants

    Institute of Scientific and Technical Information of China (English)

    Rumen Ivanov; Tzvetina Brumbarova; Petra Bauer

    2012-01-01

    Iron is an essential element for life on Earth and its shortage,or excess,in the living organism may lead to severe health disorders.Plants serve as the primary source of dietary iron and improving crop iron content is an important step towards a better public health.Our review focuses on the control of iron acquisition in dicotyledonous plants and monocots that apply a reduction-based strategy in order to mobilize and import iron from the rhizosphere.Achieving a balance between shortage and excess of iron requires a tight regulation of the activity of the iron uptake system.A number of studies,ranging from single gene characterization to systems biology analyses,have led to the rapid expansion of our knowledge on iron uptake in recent years.Here,we summarize the novel insights into the regulation of iron acquisition and internal mobilization from intracellular stores.We present a detailed view of the main known regulatory networks defined by the Arabidopsis regulators FIT and POPEYE (PYE).Additionally,we analyze the root and leaf ironresponsive regulatory networks,revealing novel potential gene interactions and reliable iron-deficiency marker genes.We discuss perspectives and open questions with regard to iron sensing and post-translational regulation.

  5. Jasmonates induce both defense responses and communication in monocotyledonous and dicotyledonous plants.

    Science.gov (United States)

    Okada, Kazunori; Abe, Hiroshi; Arimura, Gen-ichiro

    2015-01-01

    Jasmonic acid (JA) and its derivatives (jasmonates, JAs) are phytohormones with essential roles in plant defense against pathogenesis and herbivorous arthropods. Both the up- and down-regulation of defense responses are dependent on signaling pathways mediated by JAs as well as other stress hormones (e.g. salicylic acid), generally those involving the transcriptional and post-transcriptional regulation of transcription factors via protein modification and epigenetic regulation. In addition to the typical model plant Arabidopsis (a dicotyledon), advances in genetics research have made rice a model monocot in which innovative pest control traits can be introduced and whose JA signaling pathway can be studied. In this review, we introduce the dynamic functions of JAs in plant defense strategy using defensive substances (e.g. indole alkaloids and terpenoid phytoalexins) and airborne signals (e.g. green leaf volatiles and volatile terpenes) in response to biotrophic and necrotrophic pathogens as well as above-ground and below-ground herbivores. We then discuss the important issue of how the mutualism of herbivorous arthropods with viruses or bacteria can cause cross-talk between JA and other phytohormones to counter the defense systems. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  6. Dicotyledon Weed Quantification Algorithm for Selective Herbicide Application in Maize Crops.

    Science.gov (United States)

    Laursen, Morten Stigaard; Jørgensen, Rasmus Nyholm; Midtiby, Henrik Skov; Jensen, Kjeld; Christiansen, Martin Peter; Giselsson, Thomas Mosgaard; Mortensen, Anders Krogh; Jensen, Peter Kryger

    2016-11-04

    The stricter legislation within the European Union for the regulation of herbicides that are prone to leaching causes a greater economic burden on the agricultural industry through taxation. Owing to the increased economic burden, research in reducing herbicide usage has been prompted. High-resolution images from digital cameras support the studying of plant characteristics. These images can also be utilized to analyze shape and texture characteristics for weed identification. Instead of detecting weed patches, weed density can be estimated at a sub-patch level, through which even the identification of a single plant is possible. The aim of this study is to adapt the monocot and dicot coverage ratio vision (MoDiCoVi) algorithm to estimate dicotyledon leaf cover, perform grid spraying in real time, and present initial results in terms of potential herbicide savings in maize. The authors designed and executed an automated, large-scale field trial supported by the Armadillo autonomous tool carrier robot. The field trial consisted of 299 maize plots. Half of the plots (parcels) were planned with additional seeded weeds; the other half were planned with naturally occurring weeds. The in-situ evaluation showed that, compared to conventional broadcast spraying, the proposed method can reduce herbicide usage by 65% without measurable loss in biological effect.

  7. The choice of process parameters to obtain a stable dispersion system of plant-based bioactivated dicotyledonous seeds

    Directory of Open Access Journals (Sweden)

    L. A. Samofalova

    2016-01-01

    Full Text Available The article dealswith the search for the unification of technological approaches to increase the efficiency of separation of the protein complex and stability of the plant foundations from seed dicotyledonous economically important crops of soybean, hemp, buckwheat. Uneven localization of nitrogenous substances in the seed largely determines the accessibility of protein complexes for extraction. Natural fermentation of spare proteins in cellular structures when the germination process starts leads to the accumulation of soluble nitrogen, and the change in the salt composition of protoplasm facilitates the transition in the solution of insoluble complexes in the form of colloids. It is shown that fine grinding of dry seeds increases the efficiency of extraction by 1.3–1.6 times, while rough grinding increases bioactivity by 1.6–1.8 times. The dispersion containing 8.1±0.7% of dry matter at buckwheat bases and 9.5±1,3% at hemp and soy bases with the water ratio 1:4 to 1:7 satisfy the requirements of taste sensations and fullness of the chemical composition. Based on the results of the extraction of protein of buckwheat seeds the conclusion has been drawn that there is a need for a differentiated approach to selecting conditions for the creation of food framework. Taking into consideration the fact that the amount of calcium in buckwheat seeds is17–25 times smaller than in oil seeds and the quantity of phosphorus is 1.6–2 times smaller, the contribution of electrostatic forces in the protein solubility is small and the additional actions to activate the protein complex are required. To predict the properties of vegetable bases of bioactivated soybean seeds and hemp, the central composite uniform-rotatable planning was applied and the full factorial experiment with factorial scheme 3×3×3 (33 was selected. The preferred combination of values of the input parameters X1, X2, X3 was discovered. They provide for the maximum of Y

  8. Caesium-137 soil-to-plant transfer for representative agricultural crops of monocotyledonous and dicotyledonous plants in post-Chernobyl steppe landscape

    Science.gov (United States)

    Paramonova, Tatiana; Komissarova, Olga; Turykin, Leonid; Kuzmenkova, Natalia; Belyaev, Vladimir

    2016-04-01

    The accident at the Chernobyl nuclear power plant in 1986 had a large-scale action on more than 2.3 million hectares agricultural lands in Russia. The area of radioactively contaminated chernozems of semi-arid steppe zone with initial levels of Cs-137 185-555 kBq/m2 in Tula region received the name "Plavsky radioactive hotspot". Nowadays, after the first half-life period of Cs-137 arable chernozems of the region are still polluted with 3-6-fold excess above the radioactive safety standard (126-228 kBq/m2). Therefore, qualitative and quantitative characteristics of Cs-137 soil-to-plant transfer are currently a central problem for land use on the territory. The purpose of the present study was revealing the biological features of Cs-137 root uptake from contaminated arable chernozems by different agricultural crops. The components of a grass mixture growing at the central part of Plavsky radioactive hotspot with typical dicotyledonous and monocotyledonous plants - galega (Galega orientalis, Fabaceae family) and bromegrass (Bromus inermis, Gramineae family) respectively - were selected for the investigation, that was conducted during the period of harvesting in 2015. An important point was that the other factors influenced on Cs-137 soil-to-plant transfer - the level of soil pollution, soil properties, climatic conditions, vegetative phase, etc. - were equal. So, biological features of Cs-137 root uptake could be estimated the most credible manner. As a whole, general discrimination of Cs-137 root uptake was clearly shown for both agricultural crops. Whereas Cs-137 activity in rhizosphere 30-cm layer of arable chernozem was 371±74 Bq/kg (140±32 kBq/m2), Cs-137 activities in plant biomass were one-two orders of magnitude less, and transfer factor (TF) values (the ratio of the Cs-137 activities in vegetation and in soil) not exceeded 0.11. At the same time bioavailability of Cs-137 for bromegrass was significantly higher than for galega: TFs in total biomass of the

  9. Control of ALS resistant volunteer oil seed rape and other dicotyledonous weeds with GF-145, a new cereal herbicide product containing isoxaben and florasulam

    Directory of Open Access Journals (Sweden)

    Becker, Jörg

    2014-02-01

    Full Text Available GF-145 contains the active ingredients isoxaben (610 g ai/kg and florasulam (40 g ai/kg and is formulated as a Wettable Granule (WG. The active ingredients are found in commercial products such as Primus™2 (florasulam, Starane XL™ (fluroxypyr + florasulam, Ariane C™ (fluroxypyr + florasulam + clopyralid or Flexidor™ (isoxaben. While florasulam has been widely used in cereal crops in recent years, isoxaben offers a new mode of action (MOA for use in German cereal herbicides even when considering that Flexidor™ has had regulatory approval in 1988 to 1991. The MOA of isoxaben is inhibition of cellulose synthesis (HRAC class L, while florasulam inhibits Acetolactate Synthase (ALS and is a representative of the HRAC class B. It is known that florasulam works through uptake by green leaves. Isoxaben is a herbicide with soil activity and with a very low activity when foliar applied, except on some species in the cruciferae family. GF-145 is intended to be applied in the autumn in cereals (wheat, barley, rye, triticale for the control of ALS resistant volunteer oil seed rape and annual dicotyledonous weeds including Matricaria spp., Stellaria media, Papaver rhoeas, Capsella bursa-pastoris, Myosotis arvensis, Lamium spp., Galium aparine, Veronica spp. and others when applied at early post-emergence from BBCH 10 to 13 of the crop. The use rate in winter cereals is 95 g product/ha (58 g ai/ha isoxaben plus 3.75 g ai/ha florasulam. Field trials conducted in previous years confirmed excellent selectivity in all cereal crops and efficacy trials initiated in autumn 2012 show that GF-145 provides excellent and superior control to ALS resistant oil seed rape that was better than straight florasulam and other ALS active ingredients. GF-145 adds a new MOA to the cereal herbicide portfolio and controls volunteer oil seed rape, cruciferous weeds and broad-leaved weeds and is more robust than florasulam based products that do not contain isoxaben.

  10. Translocation of {sup 14}C-Labelled Substances and {sup 32}PO{sub 4} in Mistletoe-Infected and Uninfected Conifers and Dicotyledonous Trees

    Energy Technology Data Exchange (ETDEWEB)

    Leonard, O. A.; Hull, R. J. [University of California, Davis, CA (United States)

    1966-05-15

    effective method of introducing all substances (other than assimilates) into dwarf and green mistletoes. High relative humidity greatly favoured the uptake and transport of amitrole in Abies concolor but not of 2,4-D. {sup 32}PO{sub 4} was poorly absorbed by Pinus sabiniana unless the leaves were scraped before application. Phloem transport occurred at all seasons in evergreen conifers and in evergreen dicotyledonous trees. (author)

  11. Uso do novo sistema Clearfield® na cultura do girassol para o controle de plantas daninhas dicotiledóneas Use of the new Clearfield® system in sunflower culture to control dicotyledonous weeds

    Directory of Open Access Journals (Sweden)

    G. Santos

    2012-06-01

    Full Text Available A ocorrência de plantas daninhas dicotiledóneas tem limitado o aumento da área de cultivo de girassol no Brasil, devido ao seu impacto sobre a produtividade. Isso se deve à escassez de produtos registrados para a cultura com amplo espectro de ação. Em razão disso, desenvolveram-se dois experimentos com o objetivo de avaliar a eficácia e seletividade de herbicidas do grupo das imidazolinonas aplicados em pós-emergência de plantas daninhas dicotiledôneas na cultura do girassol Clearfield®. Os experimentos foram instalados no campo, em Iguatemi, distrito de Maringá-PR. Os tratamentos constituíram-se de duas testemunhas sem aplicação de herbicida, sendo uma sem capina e outra capinada, sulfentrazone (200,00 g ha-1 aplicado em pré-emergência e imazapic+imazapyr aplicados em pós-emergência nas doses de [36,75+12,25], [52,5+17,5], [12,25+36,75] e [17,5+52,5] g ha-1. Foram feitas avaliações de controle para Euphorbia heterophylla, Conyza bonariensis, Raphanus raphanistrum, Bidens pilosa, Ipomoea grandifolia e Portulaca oleracea. Também foram realizadas avaliações de intoxicação do girassol Clearfield®, estande e produtividade em kg ha-1. De acordo com os resultados, verificou-se que o uso do sistema Clearfield® mostrou-se uma ótima opção para áreas com infestação de plantas daninhas dicotiledôneas, pois possibilita a aplicação de herbicidas inibidores da enzima acetolactato sintase (ALS; os controles obtidos variaram de medianos a excelentes, além de ele não provocar injúrias à cultura e manter o estande inicial e a produtividade.The occurrence of dicotyledonous weeds has limited the increase of the area of sunflower cultivation in Brazil, due to their impact on crop yield. This is a result of a shortage of products registered for the crop with broad-spectrum control. Thus, two experiments were installed to evaluate the efficacy and selectivity of the imidazolinone herbicides applied on post

  12. Efeitos de misturas de napropamide e simazine no controle de mono e dicotiledoneas em cafeeiros novos Effects of napropamide and simazine mixtures on the control of mono and dicotyledon on new coffee trees

    Directory of Open Access Journals (Sweden)

    L.S.P. Cruz

    1980-12-01

    Full Text Available Com a finalidade de se conhecer a ação de misturas de napropamide e simazine no controle de plantas daninhas mono e dicotiledôneas em cafee iros com dois anos de idade, foi conduzido um experimento de campo em Araras, SP, em 1979/80. 0 delineamento foi o de blocos ao acaso com nove tratamentos e quatro repetições. Os tratamentos foram os seguintes: napropamide a 2,00 kg e 3,00 kg/ha; simazine a 0,50 kg e 0,75 kg/ha; e, misturas de 2,00 kg/ha de napropamide com 0,50 kg e 0,75 kg/ha de simazine, e de 3,00 kg/ha de napropamide também com 0,50 kg e 0,75 kg/ha de simaz ine . Constou do experimento ainda, uma testemunha sem herbicida. Aos 45 dias após a aplicação dos herbicidas foi feita uma contagem das plantas daninhas, e a cada 15 dias, até aos 90 dias da aplicação, foram realizadas observações visuais de porcentagem de infestação do mato. Nestas mesmas épocas também foram realizadas observações sobre sintomas de fi totoxicidade causados pelos herbicidas aos cafeeiros. As plantas daninhas presentes em maior número no ensaio foram as monocotiledôneas capim - de-colchão - Digitaria horizontalis Willd e capimpé -de-galinha Eleusine indica (L.1 Gaertn, e as dicotiledôneas carurú-de-mancha - Amaranthus viridis L. e picão-preto - Bidens pilosa L. Como era esperado, as misturas foram superiores aos tratamentos com herbicidas isolados. sendo bastante eficientes no controle das mono e dicotiledõneas que incidiram no experimento. Todos os tratamentos com 0.75 k ' ha de simazine apresentaram leves sintomas de fitotoxicidade, limitados a algumas folhas dos cafeeiros. até a última observação realizada.A field experiment was conducted in Araras in 1979/80 with the purpose to study the effects of mixture of napropamide and simazine on the control of mono and dicotyledons weeds in two years old coffee trees. The experiment was in randomised blocks with nine treatments and four repplications. The treatments were the following

  13. Collective biology of neoplastic disease in dicotyledonous plants

    International Nuclear Information System (INIS)

    Chela-Flores, J.

    1987-07-01

    We discuss the two different responses from the angiosperms to the specific molecular mechanisms of the tumor-inducing agent contained in the bacterium Agrobacterium tumefaciens. This is done in terms of the collective variables for expressing genetic response to a continuously varying supply of energy from metabolic pathways. We are led to the conjecture that the expression of the recessive oncogenes may not be restricted to humans (retinoblastoma and osteosarcoma), but may also occur in plants (crown gall), and be expressed through a heat-shock. (author). 11 refs

  14. Dicotyledon Weed Quantification Algorithm for Selective Herbicide Application in Maize Crops

    DEFF Research Database (Denmark)

    Laursen, Morten Stigaard; Nyholm Jørgensen, Rasmus; Midtiby, Henrik Skov

    2016-01-01

    The stricter legislation within the European Union for the regulation of herbicides that are prone to leaching causes a greater economic burden on the agricultural industry through taxation. Owing to the increased economic burden, research in reducing herbicide usage has been prompted. High-resol...

  15. MaisTer® Power: a Terbuthylazin free new solution to control monocotyledonous and dicotyledonous weeds in maize.

    Directory of Open Access Journals (Sweden)

    Wegener, Martin

    2014-02-01

    Full Text Available MaisTer® power is a combination of the well-known active ingredients Foramsulfuron (31,5 g/L, Iodosulfuron (1,04 g/L and the new developed ai Thiencarbazone-methyl (10,0 g/L and the new safener Cyprosulfamide (15,0 g/L. All three active ingredients belong to the group of the ALS inhibitors. The product can be applied with a dose rate of 1,5 L/ha or 1,0 L/ha. Foramsulfuron and Iodosulfuron will be taken up via the leaves of the plants whereas Thiencarbazone-methyl can penetrate the plants via the roots and the leaves. By using a dose rate of 1,5 L/ha a very good residual activity against new flushes of grass or broadleaf weeds will be observed. All relevant grass and broadleaf weeds in maize will be controlled after the application of MaisTer power including Polygonum species. If a dose rate of 1,0 L/ha is used it could make sense to add a tank mix partner like Aspect to complete the spectrum against some weeds like Chenopodium album or Polygonum convolvulus.

  16. Enhancement of innate immune system in monocot rice by transferring the dicotyledonous elongation factor Tu receptor EFR

    Institute of Scientific and Technical Information of China (English)

    Fen Lu; Huiqin Wang; Shanzhi Wang; Wendi Jiang; Changlin Shan; Bin Li; Jun Yang; Shiyong Zhang; Wenxian Sun

    2015-01-01

    The elongation factor Tu (EF-Tu) receptor (EFR) in cruciferous plants specifical y recognizes the N-terminal acetylated elf18 region of bacterial EF-Tu and thereby activates plant immunity. It has been demonstrated that Arabidopsis EFR confers broad-spectrum bacterial resistance in the EFR transgenic solanaceous plants. Here, the transgenic rice plants (Oryza sativa L. ssp. japonica cv. Zhonghua 17) and cel cultures with constitutive expression of AtEFR were developed to investigate whether AtEFR senses EF-Tu and thus enhances bacterial resistance in the monocot plants. We demonstrated that the Xanthomonas oryzae-derived elf18 peptide induced oxidative burst and mitogen-activated protein kinase activa-tion in the AtEFR transgenic rice cel s and plants, respectively. Pathogenesis-related genes, such as OsPBZ1, were upregulated dramatical y in transgenic rice plant and cel lines in response to elf18 stimulation. Importantly, pretreatment with elf18 trig-gered strong resistance to X. oryzae pv. oryzae in the transgenic plants, which was largely dependent on the AtEFR expression level. These plants also exhibited enhanced resistance to rice bacterial brown stripe, but not to rice fungal blast. Col ectively, the results indicate that the rice plants with heterologous expression of AtEFR recognize bacterial EF-Tu and exhibit enhanced broad-spectrum bacterial disease resistance and that pattern recognition receptor-mediated immunity may be manipulated across the two plant classes, dicots and monocots.

  17. Personal ideas about the application of the International Rules of Nomenclature, or, as with the Rules themselves, International deliberation? II. Some denominations of Dicotyledonous Trees and Shrubs species. With a Retrospection and a set of Propositions on the Nomenclature-Rules

    NARCIS (Netherlands)

    Valckenier Suringar, J.

    1928-01-01

    This second Part has its origin principally in Dr. ALFRED REHDER’S “Manual of Cultivated Trees and Shrubs” 1927. That admirable work contains several revolutionary looking changes of names, which changes partly were already propagated in BAILEY’S works of the last years; and I have made a study of

  18. Induced mutation to monocotyledony in periwinkle, Catharanthus ...

    Indian Academy of Sciences (India)

    Unknown

    (i) insufficiency in endogenous kinetin may lead to monocotyledonous embryo patterning and (ii) dicotyledonous em- ... Induced-mutagenesis experiments in plants have so far .... C. roseus is a small perennial herb of family Apocyna-.

  19. Assessment of hairy roots induction in Solenostemon scutellarioides ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-08-04

    Aug 4, 2009 ... family (Garcia and O'Neil, 2000). Cell suspension and transformed callus cultures of this plant are known to produce rosmarinic acid ... Hairy root is a pathological syndrome of dicotyledonous plants following wounding and ...

  20. A fruit wing of Shorea Roxb. from the Early Miocene sediments of ...

    Indian Academy of Sciences (India)

    Previously recorded plant megafossils from the Khari River Formation, Kachchh. Fossil species .... Origin and evolution of ... era of vascular plants V: Flowering plant-Dicotyledons- ... Hickey L J 1979 A revised classification of the architecture.

  1. Active Sites of Reduced Epidermal Fluorescence1 (REF1) Isoforms Contain Amino Acid Substitutions That Are Different between Monocots and Dicots.

    Science.gov (United States)

    Missihoun, Tagnon D; Kotchoni, Simeon O; Bartels, Dorothea

    2016-01-01

    Plant aldehyde dehydrogenases (ALDHs) play important roles in cell wall biosynthesis, growth, development, and tolerance to biotic and abiotic stresses. The Reduced Epidermal Fluorescence1 is encoded by the subfamily 2C of ALDHs and was shown to oxidise coniferaldehyde and sinapaldehyde to ferulic acid and sinapic acid in the phenylpropanoid pathway, respectively. This knowledge has been gained from works in the dicotyledon model species Arabidopsis thaliana then used to functionally annotate ALDH2C isoforms in other species, based on the orthology principle. However, the extent to which the ALDH isoforms differ between monocotyledons and dicotyledons has rarely been accessed side-by-side. In this study, we used a phylogenetic approach to address this question. We have analysed the ALDH genes in Brachypodium distachyon, alongside those of other sequenced monocotyledon and dicotyledon species to examine traits supporting either a convergent or divergent evolution of the ALDH2C/REF1-type proteins. We found that B. distachyon, like other grasses, contains more ALDH2C/REF1 isoforms than A. thaliana and other dicotyledon species. Some amino acid residues in ALDH2C/REF1 isoforms were found as being conserved in dicotyledons but substituted by non-equivalent residues in monocotyledons. One example of those substitutions concerns a conserved phenylalanine and a conserved tyrosine in monocotyledons and dicotyledons, respectively. Protein structure modelling suggests that the presence of tyrosine would widen the substrate-binding pocket in the dicotyledons, and thereby influence substrate specificity. We discussed the importance of these findings as new hints to investigate why ferulic acid contents and cell wall digestibility differ between the dicotyledon and monocotyledon species.

  2. Active Sites of Reduced Epidermal Fluorescence1 (REF1 Isoforms Contain Amino Acid Substitutions That Are Different between Monocots and Dicots.

    Directory of Open Access Journals (Sweden)

    Tagnon D Missihoun

    Full Text Available Plant aldehyde dehydrogenases (ALDHs play important roles in cell wall biosynthesis, growth, development, and tolerance to biotic and abiotic stresses. The Reduced Epidermal Fluorescence1 is encoded by the subfamily 2C of ALDHs and was shown to oxidise coniferaldehyde and sinapaldehyde to ferulic acid and sinapic acid in the phenylpropanoid pathway, respectively. This knowledge has been gained from works in the dicotyledon model species Arabidopsis thaliana then used to functionally annotate ALDH2C isoforms in other species, based on the orthology principle. However, the extent to which the ALDH isoforms differ between monocotyledons and dicotyledons has rarely been accessed side-by-side. In this study, we used a phylogenetic approach to address this question. We have analysed the ALDH genes in Brachypodium distachyon, alongside those of other sequenced monocotyledon and dicotyledon species to examine traits supporting either a convergent or divergent evolution of the ALDH2C/REF1-type proteins. We found that B. distachyon, like other grasses, contains more ALDH2C/REF1 isoforms than A. thaliana and other dicotyledon species. Some amino acid residues in ALDH2C/REF1 isoforms were found as being conserved in dicotyledons but substituted by non-equivalent residues in monocotyledons. One example of those substitutions concerns a conserved phenylalanine and a conserved tyrosine in monocotyledons and dicotyledons, respectively. Protein structure modelling suggests that the presence of tyrosine would widen the substrate-binding pocket in the dicotyledons, and thereby influence substrate specificity. We discussed the importance of these findings as new hints to investigate why ferulic acid contents and cell wall digestibility differ between the dicotyledon and monocotyledon species.

  3. Studies on anatomical characters indicating C3 and C4 photosynthetic metabolism in the genus Boerhavia L. (Nyctaginaceae

    Directory of Open Access Journals (Sweden)

    Abdulwakeel Ayokun-nun Ajao

    2017-08-01

    Full Text Available The C3 and C4 photosynthetic pathways in dicotyledons were investigated with the four species of Boerhavia occurring in Nigeria using light microscopy. The study is not yet well reported on dicotyledons as done for monocotyledons. The features cross-examined were stomata index, stomata size, inter-stomatal distance, stomatal density, interveinal distance, intercellular air spaces, leaf thickness, mesophyll thickness, Kranz tissue, one cell distant count criterion, maximum lateral cell count criterion, vein density and vein distance. Based on these features, these species (B. erecta, B. coccinea and B. repens were grouped into C4 while B. diffusa was grouped as a C3 plant. In particular, interveinal distance less than 166µm and maximum lateral count ranging 2 to 6 will help in grouping C4 dicotyledons species while those that were greater than these values are useful in grouping C3 and plants.

  4. On the occurrence of nuclei in mature sieve elements.

    Science.gov (United States)

    Event, R F; Davis, J D; Tucker, C M; Alfieri, F J

    1970-12-01

    The secondary phloem of 3 species of the Taxodiaceae and 13 species of woody dicotyledons was examined for the occurrence of nuclei in mature sieve elements. Nuclei were found in all mature sieve cells of Metasequoia glyptostroboides, Sequoia sempervirens and Taxodium distichum, and in some mature sieve-tube members in 12 of the 13 species of woody dicotyledons. Except for nuclei of sieve cells undergoing cessation of function, the nuclei in mature sieve cells of M. glyptostroboides, S. sempervirens and T. distichum were normal in appearance. The occurrence and morphology of nuclei in mature sieve-tube members of the woody dicotyledons were quite variable. Only 3 species, Robinia pseudoacacia, Ulmus americana and Vitis riparia, contained some mature sieve elements with apparently normal nuclei.

  5. Age-dependent variation in membrane lipid synthesis in leaves of garden pea (Pisum sativum L.)

    DEFF Research Database (Denmark)

    Hellgren, Lars; Sandelius, A.S.

    2001-01-01

    To study membrane lipid synthesis during the lifespan of a dicotyledon leaf, the second oldest leaf of 10-40-d-old plants of garden pea (Pisum sativum L.) was labelled with [1-C- 14]acetate and the distribution of radioactivity between the major membrane lipids was followed for 3 d. In the expand......To study membrane lipid synthesis during the lifespan of a dicotyledon leaf, the second oldest leaf of 10-40-d-old plants of garden pea (Pisum sativum L.) was labelled with [1-C- 14]acetate and the distribution of radioactivity between the major membrane lipids was followed for 3 d...

  6. Synthesis and Herbicidal Activity of Novel Sulfonylureas Containing 1,2,4-Triazolinone Moiety

    Institute of Scientific and Technical Information of China (English)

    LIU Zhuo; PAN Li; LI Yong-hong; WANG Su-hua; LI Zheng-ming

    2013-01-01

    A series of new sulfonylureas incorporating 1,2,4-triazolinone moiety was synthesized,which were further bio-assayed for the herbicidal activity against four herbs,representative of monocotyledons and dicotyledons.Some of them exhibited high potency to inhibit the growth of dicotyledons(Bassica napus and Amaranthus retroflexus) in the pot experiment.Compounds 9a and 9b also displayed an excellent herbicidal activity against Bassica napus at a concentration of 15 g/hectare,which were comparable with commercial triasulfuron.

  7. Potential allelochemicals from Sambucus nigra.

    Science.gov (United States)

    D'Abrosca, B; DellaGreca, M; Fiorentino, A; Monaco, P; Previtera, L; Simonet, A M; Zarrelli, A

    2001-12-01

    Twenty-four aromatic metabolites belonging to cyanogenins, lignans, flavonoids, and phenolic glycosides were obtained from Sambucus nigra. Structures were determined on the basis of their spectroscopic features. Two compounds have been isolated and identified as (2S)-2-O-beta-D-glucopyranosyl-2-hydroxyphenylacetic acid and benzyl 2-O-beta-D-glucopyranosyl-2,6-dihydroxybenzoate. All the compounds have been assayed on dicotyledons Lactuca sativa (lettuce) and Raphanus sativus (radish) and monocotyledon Allium cepa (onion) to test their stimulatory or inhibitory effects on seed germination and radicle elongation. Cyanogenins have a mainly inhibiting effect while lignans stimulate the growth. Some compounds show different effects on dicotyledons and monocotyledons.

  8. Plant-inducible virulence promoter of the Agrobacterium tumefaciens Ti plasmid

    NARCIS (Netherlands)

    Okker, Robert J.H.; Spaink, Herman; Hille, Jacques; Brussel, Ton A.N. van; Lugtenberg, Ben; Schilperoort, Rob A.

    1984-01-01

    Agrobacterium tumefaciens is the causative agent of crown gall, a plant tumour that can arise on most species of dicotyledonous plants. The tumour-inducing capacity of the bacterium requires the presence of a large plasmid, designated the Ti plasmid, which itself contains two regions essential for

  9. IRON REDUCTASE SYSTEMS ON THE PLANT PLASMA-MEMBRANE - A REVIEW

    NARCIS (Netherlands)

    MOOG, PR; BRUGGEMANN, W

    1994-01-01

    Higher plant roots, leaf mesophyll tissue, protoplasts as well as green algae are able to reduce extra-cellular ferricyanide and ferric chelates. In roots of dicotyledonous and nongraminaceous, monocotyledonous plants, the rate of ferric reduction is increased by iron deficiency. This reduction is

  10. Journal of Biosciences | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Among the Actinobacteria, the genus Frankia is well known for its facultative lifestyle as a plant symbiont of dicotyledonous plants and as a free-living soil dweller. Frankia sp. strains are generally classified into one of four major phylogenetic groups that have distinctive plant host ranges. Our understanding of these bacteria ...

  11. Molecular characterization of ferulate 5-hydroxylase gene from kenaf (Hibiscus cannabinus L.)

    Science.gov (United States)

    The purpose of this research was to clone and characterize the expression pattern of a kenaf (Hibiscus cannabinus L.) F5H gene that encodes ferulate 5-hydroxylase in the phenylpropanoid pathway. Kenaf is well known as a fast growing dicotyledonous plant, which makes it a valuable biomass plant. The ...

  12. Molecular cloning, characterization and expression of the caffeic acid O-methyltransferase (COMT) ortholog from kenaf (Hibiscus cannabinus)

    Science.gov (United States)

    We cloned the full-length of the gene putatively encoding caffeic acid O-methyltransferase (COMT) from kenaf (Hibiscus cannabinus L.) using degenerate primers and the RACE (rapid amplification of cDNA ends) method. Kenaf is an herbaceous and rapidly growing dicotyledonous plant with great potential ...

  13. Journal of Genetics | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    Availability during embryo development of exogenously supplied cytokinin kinetin suppressed the mutant phenotype. These observations suggest that, in C. roseus,. insufficiency in endogenous kinetin may lead to monocotyledonous embryo patterning and; dicotyledonous embryo formation requires a critical amount of ...

  14. Sadar et al., Afr J Tradit Complement Altern Med. (2015) 12(4):9-13 ...

    African Journals Online (AJOL)

    Proff.Adewunmi

    monocotyledonous and fourteen dicotyledonous families were reported to medicinal and food value as well as found useful in making ropes, mats, baskets and soil binding. ... angiosperms contain promising antimicrobial agents (Morales et al., 2006; Bushmann & Ailstok, 2006). Ikram et al. (2014) conducted and.

  15. Transformation of Lesquerella fendleri with the new binary vector pGPro4-35S

    Science.gov (United States)

    Crop genetic engineering requires the use of various promoters to control the expression of introduced transgenes. Some of the binary vectors currently available for promoter characterization in dicotyledonous plants have pitfalls due to their construction, such as containing a selectable marker ca...

  16. Journal of Biosciences | Indian Academy of Sciences

    Indian Academy of Sciences (India)

    The mutant produced seeds possessing tricotyledonous embryos, unlike the typically dicotyledonous embryos present in the wild type Abo+ seeds. In comparison to Abo+ adults, the mutant plants had short stature and lanceolate leaves. The vascular bundles in the leaves and stem were poorly developed. Leaf surfaces ...

  17. Arabinose-rich polymers as an evolutionary strategy to plasticize resurrection plant cell walls against desiccation

    DEFF Research Database (Denmark)

    Moore, John P.; Nguema-Ona, Eric E.; Vicré-Gibouin, Mäite

    2013-01-01

    A variety of Southern African resurrection plants were surveyed using high-throughput cell wall profiling tools. Species evaluated were the dicotyledons, Myrothamnus flabellifolia and Craterostigma plantagineum; the monocotyledons, Xerophyta viscosa, Xerophyta schlecterii, Xerophyta humilis and t......-arabinans, arabinogalactan proteins and arabinoxylans) as the major contributors in ensuring flexibility is maintained and rehydration is facilitated in these plants....

  18. Effect of nitrogen supply on leaf growth, leaf nitrogen economy and photosynthetic capacity in potato

    NARCIS (Netherlands)

    Vos, J.; Putten, van der P.E.L.

    1998-01-01

    Literature reports show little effect of nitrogen supply on radiation use efficiency in potato and in other dicotyledonous C3 species. This paper tests the hypothesis that potato reduces leaf size rather than leaf nitrogen concentration and photosynthetic capacity when nitrogen is in short supply.

  19. First report of Orobanche ludoviciana parasitizing sunflowers

    Science.gov (United States)

    Broomrape is the common name given to a group of flowering plants belonging to the genus Orobanche that parasitize the roots of higher dicotyledonous plants. More than 100 species of Orobanche have been identified, all of which are obligate parasites that lack chlorophyll and depend upon their host ...

  20. Insertional mutagenesis in the vascular wilt pathogen Verticillium dahliae

    NARCIS (Netherlands)

    Santhanam, P.

    2014-01-01

    Vascular wilt diseases caused by soil-borne pathogens are among the most

    devastating plant diseases worldwide. The ascomycete fungus Verticillium dahliae

    causes vascular wilt diseases in hundreds of dicotyledonous plant species, including

    important crops such as eggplant,

  1. Entyloma scandicis, a new smut fungus on Scandix verna from Mediterranean forests of Israel

    Science.gov (United States)

    Entyloma is a genus of more than 170 species of smut fungi parasitizing dicotyledons. Within the genus, the species sporulating in vegetative organs of Apiaceae form a separate group. In this study, the morphology and phylogeny of Entyloma on Scandix verna (Apiaceae, Scandiceae) collected in Mount C...

  2. Virulence determinants of Pseudomonas syringae strains isolated from grasses in the context of a small type III effector repertoire

    DEFF Research Database (Denmark)

    Dudnik, Alexey; Dudler, Robert

    2014-01-01

    derivative that inhibits the eukaryotic proteasome. In strains colonizing dicotyledonous plants, the compound was demonstrated to suppress the salicylic-acid-dependent defense pathway. Here, we analyze virulence factors of three strains colonizing wheat (Triticum aestivum): P. syringae pathovar syringae (Psy...

  3. Diel time-courses of leaf growth in monocot and dicot species: endogenous rhythms and temperature effects.

    Science.gov (United States)

    Poiré, Richard; Wiese-Klinkenberg, Anika; Parent, Boris; Mielewczik, Michael; Schurr, Ulrich; Tardieu, François; Walter, Achim

    2010-06-01

    Diel (24 h) leaf growth patterns were differently affected by temperature variations and the circadian clock in several plant species. In the monocotyledon Zea mays, leaf elongation rate closely followed changes in temperature. In the dicotyledons Nicotiana tabacum, Ricinus communis, and Flaveria bidentis, the effect of temperature regimes was less obvious and leaf growth exhibited a clear circadian oscillation. These differences were related neither to primary metabolism nor to altered carbohydrate availability for growth. The effect of endogenous rhythms on leaf growth was analysed under continuous light in Arabidopsis thaliana, Ricinus communis, Zea mays, and Oryza sativa. No rhythmic growth was observed under continuous light in the two monocotyledons, while growth rhythmicity persisted in the two dicotyledons. Based on model simulations it is concluded that diel leaf growth patterns in mono- and dicotyledons result from the additive effects of both circadian-clock-controlled processes and responses to environmental changes such as temperature and evaporative demand. Apparently very distinct diel leaf growth behaviour of monocotyledons and dicotyledons can thus be explained by the different degrees to which diel temperature variations affect leaf growth in the two groups of species which, in turn, depends on the extent of the leaf growth control by internal clocks.

  4. Review

    NARCIS (Netherlands)

    Steenis, van C.G.G.J.

    1970-01-01

    This is primarily a textbook for students, providing a synopsis of orders and families of Gymnosperms, Dicotyledons, and Monocotyledons native, naturalized, and commonly cultivated in Malaya and Singapore. It emerged from a syllabus prepared by the author in 1960. There is a brief introduction. The

  5. Fe, Cr, Ni, Cu, Mg, Al, Ti, and S contents in plants and soil of heaps of nickel smelting works

    Energy Technology Data Exchange (ETDEWEB)

    Banasova, V; Hajduk, J

    1977-01-01

    The writers established the Fe, Ce, Cr, Ni, Ca, Mg, Al, Ti and S contents in the neopedon of heaps piling up from processing of nickel ore as well as in the plants: Cardaria draba, Salsola cali, Agropyrum repens, Bromus erectus, Calamagrostis epigeios, Cynodon dactylon and Matricaria inodora, growing on such heaps. Ca, Mg and S contents were found to be higher in dicotyledons and Fe, Al, Ti, Ni and Cr contents higher in monocotyledons. The analyzed dicotyledons appeared to be concentrators of Ca and S. Highest Fe, Al, Ti, Ni and Cr contents were found in individuals of the species Agropyrum repens. The neopedon as well as the plants had extraordinarily high Cr concentrations. The species Salsola cali has been found to possess an unusually higher affinity to the dump substrate after processing of nickel ore and to be a concentrator of Mg. 16 references, 1 table.

  6. Differential expression of catalase genes in Nicotiana plumbaginifolia (L.).

    Science.gov (United States)

    Willekens, H; Langebartels, C; Tiré, C; Van Montagu, M; Inzé, D; Van Camp, W

    1994-10-25

    We have analyzed the expression of three catalase (Cat; EC 1.11.1.6) genes from Nicotiana plumbaginifolia by means of RNA blot and in situ hybridizations. Our data demonstrate that the expression of each catalase is associated with a particular H2O2-producing process. Cat1 appears to be specifically involved in the scavenging of photorespiratory H2O2 and is under control of a circadian rhythm, Cat2 is uniformly expressed in different organs with a cellular preference for vascular tissues, and the expression profile of Cat3 points to a role in glyoxysomal processes. Differential expression of these catalases is also manifested in response to temperature changes. DNA sequence comparison with other dicotyledonous catalases led to the identification of at least three distinct classes, which indicates that the functional organization of catalases is generally conserved in dicotyledonous plants.

  7. Tinjauan Kembali* (Review Sebuah Tinjauan Tentang Parasit Tali Putri (Cuscuta Spp.) Dan Pengendaliannya [a Review of Dodder (Cuscuta Spp.) and Its Control

    OpenAIRE

    Sunaryo, Sunaryo

    2003-01-01

    Cuscuta species are parasitic seed plants with twining stems, that coil and fasten to host plants with attachments called haustoria.The Cuscuta stem forms the haustorial coil around the host.Several species of Cuscuta are troublesome parasites on numerous dicotyledonous plants and make eradication and control most difficult. Overall control of Cuscuta is based on mechanical, cultural,chemical and biological methods. Resistant varieties of susceptible crops and biological control are presently...

  8. Restricted cell elongation in Arabidopsis hypocotyls is associated with a reduced average pectin esterification level

    OpenAIRE

    Derbyshire, Paul; McCann, Maureen C; Roberts, Keith

    2007-01-01

    Abstract Background Cell elongation is mainly limited by the extensibility of the cell wall. Dicotyledonous primary (growing) cell walls contain cellulose, xyloglucan, pectin and proteins, but little is known about how each polymer class contributes to the cell wall mechanical properties that control extensibility. Results We present evidence that the degree of pectin methyl-esterification (DE%) limits cell growth, and that a minimum level of about 60% DE is required for normal cell elongatio...

  9. Cooperative ethylene receptor signaling

    OpenAIRE

    Liu, Qian; Wen, Chi-Kuang

    2012-01-01

    The gaseous plant hormone ethylene is perceived by a family of five ethylene receptor members in the dicotyledonous model plant Arabidopsis. Genetic and biochemical studies suggest that the ethylene response is suppressed by ethylene receptor complexes, but the biochemical nature of the receptor signal is unknown. Without appropriate biochemical measures to trace the ethylene receptor signal and quantify the signal strength, the biological significance of the modulation of ethylene responses ...

  10. Introducing wood anatomical and dendrochronological aspects of herbaceous plants: applications of the Xylem Database to vegetation science

    Czech Academy of Sciences Publication Activity Database

    Büntgen, Ulf; Psomas, A.; Schweingruber, F. H.

    2014-01-01

    Roč. 25, č. 4 (2014), s. 967-977 ISSN 1100-9233 R&D Projects: GA MŠk(CZ) EE2.3.20.0248 Institutional support: RVO:67179843 Keywords : dendrochronology * dicotyledon * environmental change * functional traits * herbs * life form * non-forest vegetation * secondary growth * shrub * vegetation cover * wood anatomy * Xylem formation Subject RIV: DG - Athmosphere Sciences, Meteorology Impact factor: 3.709, year: 2014

  11. Production of Phytotoxic Metabolite Using Biphasic Fermentation System from Strain C1136 of Lasiodiplodia pseudotheobromae, a Potential Bioherbicidal Agent

    OpenAIRE

    Charles Oluwaseun ADETUNJI; Julius Kola OLOKE; Gandham PRASAD; Moses ABALAKA; Emenike Onyebum IROKANULO

    2017-01-01

    Formulation of effective and environmental friendly bioherbicides depends on the type of fermentation medium used for the production of phytotoxic metabolites. The effect of biomass, colony forming unit and the phytotoxic metabolite produced from the biphasic fermentation was carried out, while the phytotoxic metabolite was tested in vivo and in-vitro on Echinochola crus-galli and dicotyledonous Chromolaena odorata. The mutant strain of Lasiodiplodia pseudotheobromae C1136 (Lp90) produced th...

  12. Nopal Cactus (Opuntia ficus-indica) as a Source of Bioactive Compounds for Nutrition, Health and Disease

    OpenAIRE

    Karym El-Mostafa; Youssef El Kharrassi; Asmaa Badreddine; Pierre Andreoletti; Joseph Vamecq; M'Hammed Saïd El Kebbaj; Norbert Latruffe; Gérard Lizard; Boubker Nasser; Mustapha Cherkaoui-Malki

    2014-01-01

    Opuntia ficus-indica, commonly referred to as prickly pear or nopal cactus, is a dicotyledonous angiosperm plant. It belongs to the Cactaceae family and is characterized by its remarkable adaptation to arid and semi-arid climates in tropical and subtropical regions of the globe. In the last decade, compelling evidence for the nutritional and health benefit potential of this cactus has been provided by academic scientists and private companies. Notably, its rich composition in polyphenols, vit...

  13. The effect of intercropping on weed infestation of a spring barley crop cultivated in monoculture

    Directory of Open Access Journals (Sweden)

    Ewa Kwiecińska-Poppe

    2012-12-01

    Full Text Available This paper presents the results of a study carried out in the years 2005-2007 in the Bezek Experimental Farm near the city of Chełm, Poland, on heavy mixed rendzina soil. The effect of intercropping, using red clover (cv. Dajana and white clover (cv. Astra, on weed infestation of a spring barley crop was studied. The species composition of weeds in the spring barley crop changed to a small extent under the influence of the application of clover intercropping, whereas the population size of particular species showed large fluctuations. In the spring barley crop with the red clover intercrop, Sonchus arvensis occurred in greatest numbers among dicotyledonous weed species. In the barley crop with white clover and without intercrop, Viola arvensis and Sonchus arvensis were the dominant dicotyledonous species. Setaria pumila was the dominant monocotyledonous species in all the treatments. Intercropping using red and white clover clearly limited the growth and development of weeds. The red clover intercrop in the spring barley crop better reduced the infestation with dicotyledonous weeds and also significantly reduced the number of monocotyledonous weeds and the total number of weeds, whereas the white clover intercrop limited only the number of monocotyledonous weeds. The application of the herbicide Chwastox Extra 300 SL significantly reduced the fresh weight of weeds found in the spring barley crop. The presence of the intercrop resulted in different total numbers of weeds in particular treatments. Intercropping distinctly limited the occurrence of the following weed species: Sonchus arvensis, Fallopia convolvulus, Melandrium album, Amaranthus retroflexus, Veronica arvensis and Medicago lupulina. The investigated intercrop species also reduced the biomass of weeds. The application of the herbicide did not differentiate the number of monocotyledonous weeds, which resulted from the application of Chwastox Extra 300 SL that controls only

  14. Fire and drought experiments in northern wetlands: A climate change analogue

    Energy Technology Data Exchange (ETDEWEB)

    Hogenbirk, J.C.; Wen, R.W. (Alberta Univ., Edmonton, AB (Canada))

    1991-09-01

    Drought and fire, which may increase in frequency and severity because of global warming, were simulated in mid-boreal wetlands by transplanting soil block upslope to a lower water table and by prescribed burns. In the 2 years after treatments were applied to seasonally flooded vegetation zones in the Peace-Athabasca Delta, Alberta, the drought treatment did not significantly change stem density and height of the dominant hygrophytes Calamagrostics canadensis and Carex atherodes. Dicotyledonous species' density and richness increased 3- to 36-fold on soil blocks moved upslope to the driest vegetation zone relative to unmoved soil blocks. The percent cover of native dicotyledonous species was unaffected but that of xerophytic Eurasian species, Sonchus arvensis and Cirsium arvense, increased 5- to 13-fold after dought treatment. Fire, particularly the deepest burn, reduced graminoid density and height up to 90%. Dicotyledon density, but not richness, was generally higher after fire. Plant cover was unaffected by fire but Eurasian species' cover was still 3- to 15-fold greater than that of native species. Seasonally flooded vegetation zones will likely be shifted from flood-driven dynamics with cool and moist environmental conditions towards drought- and fire-driven dynamics with warmer and drier conditions. It is hypothesized that, under these climate change conditions, Eurasian species might dominate early successional communities in mid-boreal wetlands. 37 refs., 1 fig., 4 tabs.

  15. Progress of cereal transformation technology mediated by Agrobacterium tumefaciens

    Directory of Open Access Journals (Sweden)

    Yukoh eHiei

    2014-11-01

    Full Text Available Monocotyledonous plants were believed to be not transformable by the soil bacterium Agrobacterium tumefaciens until two decades ago, although convenient protocols for infection of leaf disks and subsequent regeneration of transgenic plants had been well established in a number of dicotyledonous species by then. This belief was reinforced by the fact that monocotyledons are mostly outside the host range of crown gall disease caused by the bacterium and by the failures in trials in monocotyledons to mimic the transformation protocols for dicotyledons. However, a key reason for the failure could have been the lack of active cell divisions at the wound sites, which are the basis of tissue culture and transformation in dicotyledons, in monocotyledons. The complexity and narrow optimal windows of critical factors, such as genotypes of plants, conditions of the plants from which explants are prepared, tissue culture methods and culture media, pre-treatments of explants, strains of A. tumefaciens, inducers of virulence genes, transformation vectors, selection marker genes and selective agents, kept technical hurdles high. Eventually it was determined that rice and maize could be transformed by co-cultivating cells of callus cultures or immature embryos, which are actively dividing or about to divide, with A. tumefaciens. Subsequently, these initial difficulties were resolved one by one by many research groups, and the major cereals are now transformed quite efficiently. As many as 15 independent transgenic events may be regenerated from a single piece of immature embryo of rice. Maize transformation protocols are well established, and almost all transgenic events deregulated for commercialization after 2003 were generated by Agrobacterium-mediated transformation. Wheat, barley and sorghum are also among those plants that can be efficiently transformed by A. tumefaciens.

  16. The structures of cytosolic and plastid-located glutamine synthetases from Medicago truncatula reveal a common and dynamic architecture

    International Nuclear Information System (INIS)

    Torreira, Eva; Seabra, Ana Rita; Marriott, Hazel; Zhou, Min; Llorca, Óscar; Robinson, Carol V.; Carvalho, Helena G.; Fernández-Tornero, Carlos; Pereira, Pedro José Barbosa

    2014-01-01

    The experimental models of dicotyledonous cytoplasmic and plastid-located glutamine synthetases unveil a conserved eukaryotic-type decameric architecture, with subtle structural differences in M. truncatula isoenzymes that account for their distinct herbicide resistance. The first step of nitrogen assimilation in higher plants, the energy-driven incorporation of ammonia into glutamate, is catalyzed by glutamine synthetase. This central process yields the readily metabolizable glutamine, which in turn is at the basis of all subsequent biosynthesis of nitrogenous compounds. The essential role performed by glutamine synthetase makes it a prime target for herbicidal compounds, but also a suitable intervention point for the improvement of crop yields. Although the majority of crop plants are dicotyledonous, little is known about the structural organization of glutamine synthetase in these organisms and about the functional differences between the different isoforms. Here, the structural characterization of two glutamine synthetase isoforms from the model legume Medicago truncatula is reported: the crystallographic structure of cytoplasmic GSII-1a and an electron cryomicroscopy reconstruction of plastid-located GSII-2a. Together, these structural models unveil a decameric organization of dicotyledonous glutamine synthetase, with two pentameric rings weakly connected by inter-ring loops. Moreover, rearrangement of these dynamic loops changes the relative orientation of the rings, suggesting a zipper-like mechanism for their assembly into a decameric enzyme. Finally, the atomic structure of M. truncatula GSII-1a provides important insights into the structural determinants of herbicide resistance in this family of enzymes, opening new avenues for the development of herbicide-resistant plants

  17. The structures of cytosolic and plastid-located glutamine synthetases from Medicago truncatula reveal a common and dynamic architecture

    Energy Technology Data Exchange (ETDEWEB)

    Torreira, Eva [Centro de Investigaciones Biológicas – CSIC, Ramiro de Maeztu 9, 28040 Madrid (Spain); Seabra, Ana Rita [IBMC – Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua do Campo Alegre 823, 4150-180 Porto (Portugal); Marriott, Hazel; Zhou, Min [University of Oxford, South Parks Road, Oxford OX1 3QZ (United Kingdom); Llorca, Óscar [Centro de Investigaciones Biológicas – CSIC, Ramiro de Maeztu 9, 28040 Madrid (Spain); Robinson, Carol V. [University of Oxford, South Parks Road, Oxford OX1 3QZ (United Kingdom); Carvalho, Helena G. [IBMC – Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua do Campo Alegre 823, 4150-180 Porto (Portugal); Fernández-Tornero, Carlos, E-mail: cftornero@cib.csic.es [Centro de Investigaciones Biológicas – CSIC, Ramiro de Maeztu 9, 28040 Madrid (Spain); Pereira, Pedro José Barbosa, E-mail: cftornero@cib.csic.es [IBMC – Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua do Campo Alegre 823, 4150-180 Porto (Portugal); Centro de Investigaciones Biológicas – CSIC, Ramiro de Maeztu 9, 28040 Madrid (Spain)

    2014-04-01

    The experimental models of dicotyledonous cytoplasmic and plastid-located glutamine synthetases unveil a conserved eukaryotic-type decameric architecture, with subtle structural differences in M. truncatula isoenzymes that account for their distinct herbicide resistance. The first step of nitrogen assimilation in higher plants, the energy-driven incorporation of ammonia into glutamate, is catalyzed by glutamine synthetase. This central process yields the readily metabolizable glutamine, which in turn is at the basis of all subsequent biosynthesis of nitrogenous compounds. The essential role performed by glutamine synthetase makes it a prime target for herbicidal compounds, but also a suitable intervention point for the improvement of crop yields. Although the majority of crop plants are dicotyledonous, little is known about the structural organization of glutamine synthetase in these organisms and about the functional differences between the different isoforms. Here, the structural characterization of two glutamine synthetase isoforms from the model legume Medicago truncatula is reported: the crystallographic structure of cytoplasmic GSII-1a and an electron cryomicroscopy reconstruction of plastid-located GSII-2a. Together, these structural models unveil a decameric organization of dicotyledonous glutamine synthetase, with two pentameric rings weakly connected by inter-ring loops. Moreover, rearrangement of these dynamic loops changes the relative orientation of the rings, suggesting a zipper-like mechanism for their assembly into a decameric enzyme. Finally, the atomic structure of M. truncatula GSII-1a provides important insights into the structural determinants of herbicide resistance in this family of enzymes, opening new avenues for the development of herbicide-resistant plants.

  18. Chemical Control of Curled Dock (Rumex crispus L. and Other Weeds in Noncropped Areas

    Directory of Open Access Journals (Sweden)

    Tsvetanka Dimitrova

    2008-01-01

    Full Text Available Rumex crispus L. is an invasive species widespread in our country and in particular in the region of North Bulgaria. It is characterized by high biological and ecological plasticity. Owing to its great reproductive potential, the weed has been assigned to the list of economically most important weeds in the country. With the purpose of studying the possibility of chemical weed control in noncropped areas with heavy natural background infestation with R. crispus L. and other dicotyledonous weeds, two field trials were carried out. A ready-to-use herbicide mixture 2,4-D 140.2 g/l-1 + Triclopyr 144 g/l-1, trade product Genoxon 3X (X0050, was tested at two doses of active ingredient, 3552 and 2842 ml/ha-1. It was found that: (1 population density of Rumex crispus L. can be successfully reduced by treatment at the stage of early stem formation; herbicideefficacy with 3552 and 2882 ml/ha-1 doses on the 21st day after treatment was 100% and 90.5%, respectively, at the end of vegetation 94.4 and 85.7%, respectively; (2 herbicidal efficacy was lower when R. crispus L. was treated at the 5 - 6 leaf stage, being 100 – 94.1%and 80 – 76.5% respectively for the indicated doses and time of recording; (3 at the studied doses the herbicide controlled both annual dicotyledonous weeds (Amaranthus spp., Chenopodium album L., Portulaca oleracea L. and perennial dicotyledonous ones (Cirsiumarvense L., Sonchus arvensis L., Convolvulus arvensis L., Carduus acanthoides L., but it was not toxic to monocotyledonous weeds.

  19. The key role of peltate glandular trichomes in symbiota comprising clavicipitaceous fungi of the genus periglandula and their host plants.

    Science.gov (United States)

    Steiner, Ulrike; Kucht, Sabine Hellwig neé; Ahimsa-Müller, Mahalia A; Grundmann, Nicola; Li, Shu-Ming; Drewke, Christel; Leistner, Eckhard

    2015-04-16

    Clavicipitaceous fungi producing ergot alkaloids were recently discovered to be epibiotically associated with peltate glandular trichomes of Ipomoea asarifolia and Turbina corymbosa, dicotyledonous plants of the family Convolvulaceae. Mediators of the close association between fungi and trichomes may be sesquiterpenes, main components in the volatile oil of different convolvulaceous plants. Molecular biological studies and microscopic investigations led to the observation that the trichomes do not only secrete sesquiterpenes and palmitic acid but also seem to absorb ergot alkaloids from the epibiotic fungal species of the genus Periglandula. Thus, the trichomes are likely to have a dual and key function in a metabolic dialogue between fungus and host plant.

  20. Ferns and flowering plants of Klaserie Private Nature Reserve, eastern Transvaal: an annotated checklist

    Directory of Open Access Journals (Sweden)

    N. Zambatis

    1994-10-01

    Full Text Available An annotated checklist of the plant taxa of the Klaserie Private Nature Reserve, eastern Transvaal Lowveld, is presented. Of the 618 infrageneric taxa recorded, six are pteridophytes and the remainder angiosperms. Of these, 161 are monocotyledons and 451 dicotyledons. Five of the latter are currently listed in the Red Data List of the Transvaal, two of which are first records for the Transvaal Lowveld. The vegetation of the reserve shows strong affinities with the Savanna Biome, and to a lesser degree, with the Grassland Biome.

  1. Anatomy of Sarcocaulon

    Directory of Open Access Journals (Sweden)

    R. L. Verhoeven

    1983-11-01

    Full Text Available The anatomy of the leaf blade, petiole, stem and root of the genus Sarcocaulon (DC. Sweet is discussed. On the basis of the leaf anatomy, the four sections recognized by Moffett (1979 can be identified: section Denticulati (dorsiventral leaves, section Multifidi (isobilateral leaves and adaxial and abaxial palisade continuous at midvein, section Crenati (isobilateral leaves, short curved trichomes and glandular hairs, section Sarcocaulon (isobilateral leaves and glandular hairs only. The anatomy of the stem is typically that of a herbaceous dicotyledon with a thick periderm. The root structure shows that the function of the root is not food storage.

  2. THE ECONOMIC IMPACT OF CUSCUTA: DAMAGES AND USAGES

    OpenAIRE

    TANASE Maria; SAND Camelia; CIORTEA Gligor

    2012-01-01

    Many dicotyledonous weeds serve as hosts for Cuscuta. Such plants can support Cuscuta on road-sides, field borders, and other non-cropped areas, as well as within fields of non-host crops. Weedy hosts have two significant economic effects: not only can they perpetuate and even amplify the reservoir of Cuscuta seed in the soil during years in which non-host crops are grown, but they also serve as a first attachment site for Cuscuta seedlings. Much of the information found in literature refers ...

  3. Jasmonic acid and salicylic acid activate a common defense system in rice.

    Science.gov (United States)

    Tamaoki, Daisuke; Seo, Shigemi; Yamada, Shoko; Kano, Akihito; Miyamoto, Ayumi; Shishido, Hodaka; Miyoshi, Seika; Taniguchi, Shiduku; Akimitsu, Kazuya; Gomi, Kenji

    2013-06-01

    Jasmonic acid (JA) and salicylic acid (SA) play important roles in plant defense systems. JA and SA signaling pathways interact antagonistically in dicotyledonous plants, but, the status of crosstalk between JA and SA signaling is unknown in monocots. Our rice microarray analysis showed that more than half of the genes upregulated by the SA analog BTH are also upregulated by JA, suggesting that a major portion of the SA-upregulated genes are regulated by JA-dependent signaling in rice. A common defense system that is activated by both JA and SA is thus proposed which plays an important role in pathogen defense responses in rice.

  4. Floristic diversity of 'Chinarite' protected area – Rodopi municipality, Bulgaria

    Directory of Open Access Journals (Sweden)

    L. Dospatliev

    2017-06-01

    Full Text Available Abstract. Study on the species composition of vascular plants in 'Chinarite' protected area in Belashtitsa village, Rodopi Municipality, Bulgaria was conducted using the floristic analysis method. A total of 147 species of vascular plants were identified, belonging to 124 genera and 51 families. The families Poaceae, Asteraceae, Lamiaceae, Brassicaceae, Apiaceae, Rosaceae and Fabaceae are the most highly represented. The comparative analysis shows that the angiosperm taxa are dominating in the studied area. Dicotyledonous plants are prevailing among them, while monocotyledonous are significantly less in number. Molinia caerulea species, identified in the present study, has not been reported to have been found so far in the Thracian lowland floristic region.

  5. Nitrogen transfer from forage legumes to nine neighbouring plants in a multi-species grassland

    DEFF Research Database (Denmark)

    Pirhofer-Walzl, Karin; Rasmussen, Jim; Jensen, Henning Høgh

    2012-01-01

    Legumes play a crucial role in nitrogen supply to grass-legume mixtures for ruminant fodder. To quantify N transfer from legumes to neighbouring plants in multi-species grasslands we established a grass-legume-herb mixture on a loamy-sandy site in Denmark. White clover (Trifolium repens L.), red...... amounts of N from legumes than dicotyledonous plants which generally have taproots. Slurry application mainly increased N transfer from legumes to grasses. During the growing season the three legumes transferred approximately 40 kg N ha-1 to neighbouring plants. Below-ground N transfer from legumes...

  6. Bacteria from Wheat and Cucurbit Plant Roots Metabolize PAHs and Aromatic Root Exudates: Implications for Rhizodegradation

    DEFF Research Database (Denmark)

    Ely, Cairn S; Smets, Barth F.

    2017-01-01

    The chemical interaction between plants and bacteria in the root zone can lead to soil decontamination. Bacteria which degrade PAHs have been isolated from the rhizospheres of plant species with varied biological traits, however, it is not known what phytochemicals promote contaminant degradation....... One monocot and two dicotyledon plants were grown in PAH-contaminated soil from a manufactured gas plant (MGP) site. A phytotoxicity assay confirmed greater soil decontamination in rhizospheres when compared to bulk soil controls. Bacteria were isolated from plant roots (rhizobacteria) and selected...

  7. Glycoprotein component of plant cell walls

    International Nuclear Information System (INIS)

    Cooper, J.B.; Chen, J.A.; Varner, J.E.

    1984-01-01

    The primary wall surrounding most dicotyledonous plant cells contains a hydroxyproline-rich glycoprotein (HRGP) component named extensin. A small group of glycopeptides solubilized from isolated cell walls by proteolysis contained a repeated pentapeptide glycosylated by tri- and tetraarabinosides linked to hydroxyproline and, by galactose, linked to serine. Recently, two complementary approaches to this problem have provided results which greatly increase the understanding of wall extensin. In this paper the authors describe what is known about the structure of soluble extensin secreted into the walls of the carrot root cells

  8. Evidence of cretaceous to recent West African intertropical vegetation from continental sediment spore-pollen analysis

    Science.gov (United States)

    Salard-Cheboldaeff, M.; Dejax, J.

    The succession of spore-pollen assemblages during the Cretaceous and Tertiary, as defined in each of the basin from Senegal to Angola, gives the possibility to consider the intertropical African flora evolution for the past 120 M.a. During the Early Cretaceous, xeric-adapted gymnosperms and various ferns were predominant the flora which nevertheless comprises previously unknown early angiosperm pollen. During the Middle Cretaceous, gymnospers were gradually replaced by angiosperms; these became more and more abundant, along with the diversification of new genera and species. During the Paleocene, the radiation of the monocotyledons (mainly that of the palm-trees) as well as a greater diversification among the dicotyledons and ferms are noteworthy. Since gymnosperms had almost disappeared by the Eocene, the diversification of the dicotyledons went on until the neogene, when all extinct pollen types are already present. These important modifications of the vegetation reflect evolutionary trends as well as climatic changes during the Cretaceous: the climate, firstly hot, dry and perhaps arid, did probably induced salt deposition, and later became gradually more humid under oceanic influences which arose in connection with the Gondwana break-up.

  9. Arabidopsis thaliana sucrose phosphate synthase (sps) genes are expressed differentially in organs and tissues, and their transcription is regulated by osmotic stress.

    Science.gov (United States)

    Solís-Guzmán, María Gloria; Argüello-Astorga, Gerardo; López-Bucio, José; Ruiz-Herrera, León Francisco; López-Meza, Joel Edmundo; Sánchez-Calderón, Lenin; Carreón-Abud, Yazmín; Martínez-Trujillo, Miguel

    2017-11-01

    Sucrose is synthesized from UDP-Glc and Fru-6-phosphate via the activity of sucrose-phosphate synthase (SPS) enzymes, which produce Suc-6-phosphate. Suc-6-phosphate is rapidly dephosphorylated by phosphatases to produce Suc and inorganic phosphate. Arabidopsis has four sps genes encoding SPS enzymes. Of these enzymes, AtSPS1F and AtSPS2F have been grouped with other dicotyledonous SPS enzymes, while AtSPS3F and AtSPS4F are included in groups with both dicotyledonous and monocotyledonous SPS enzymes. In this work, we generated Arabidopsis thaliana transformants containing the promoter region of each sps gene fused to gfp::uidA reporter genes. A detailed characterization of expression conferred by the sps promoters in organs and tissues was performed. We observed expression of AtSPS1F, AtSPS2F and AtSPS3F in the columella roots of the plants that support sucrose synthesis. Hence, these findings support the idea that sucrose synthesis occurs in the columella cells, and suggests that sucrose has a role in this tissue. In addition, the expression of AtSPS4F was identified in embryos and suggests its participation in this developmental stage. Quantitative transcriptional analysis of A. thaliana plants grown in media with different osmotic potential showed that AtSPS2F and AtSPS4F respond to osmotic stress. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Evidence for the control of phytolith formation in Cucurbita fruits by the hard rind (Hr) genetic locus: Archaeological and ecological implications

    Science.gov (United States)

    Piperno, Dolores R.; Holst, Irene; Wessel-Beaver, Linda; Andres, Thomas C.

    2002-01-01

    Many angiosperms, both monocotyledons and dicotyledons, heavily impregnate their vegetative and reproductive organs with solid particles of silicon dioxide (SiO2) known as opaline phytoliths. The underlying mechanisms accounting for the formation of phytoliths in plants are poorly understood, however. Using wild and domesticated species in the genus Cucurbita along with their F1 and F2 progeny, we have demonstrated that the production of large diagnostic phytoliths in fruit rinds exhibits a one-to-one correspondence to the lignification of these structures. We propose that phytolith formation in Cucurbita fruits is primarily determined by a dominant genetic locus, called hard rind (Hr), previously shown to code for lignin deposition. If true, this evidence represents a demonstration of genetic control over phytolith production in a dicotyledon and provides considerable support to hypotheses that silica phytoliths constitute another important system of mechanical defense in plants. Our research also identifies Hr as another single locus controlling more than one important phenotypic difference between wild and domesticated plants, and establishes rind tissue cell structure and hardness under the effects of Hr as an important determinant of phytolith morphology. When recovered from pre-Columbian archaeological sites, Cucurbita phytoliths represent genetically controlled fossil markers of exploitation and domestication in this important economic genus. PMID:12149443

  11. Determination of natural radioactivity and the concentration of elements in soil and plants at Krau Wildlife Reserve, Temerloh, Pahang

    International Nuclear Information System (INIS)

    Hafiz Hadzori

    2012-01-01

    This study was conducted to determine the natural radioactivity and the concentration of elements in soil and plants at Krau Wildlife Reserve, Pahang. Soil and plant samples collected were air dried and heated in the oven at temperature of 100 degree Celsius. Inductively Coupled Plasma Mass-Spectrometer (ICP-MS) was used to determine the natural radioactivity and elemental contents of each sample. Results showed that the concentration of U-238 and Th-232 varied from each sampling site. The concentration of Th-232 is higher than of U-238. For soil and plants samples, the natural radioactivity for both radionuclides were below 72 Bq/ kg. 15 elements present in both soil and plant samples, among other are Al, Fe, K, Mg, Mn, Ca, Zn, Co, Cd and As. The concentration of each elements differs for every sampling site. The elements with higher concentration are Al, Ca, Fe, K, Mg and Mn. This study showed that monocotyledon taking up more Mg than dicotyledons whereas dicotyledon plants taking up more Al. (author)

  12. A genomic approach to elucidating grass flower development

    Directory of Open Access Journals (Sweden)

    Dornelas Marcelo C.

    2001-01-01

    Full Text Available In sugarcane (Saccharum sp as with other species of grass, at a certain moment of its life cycle the vegetative meristem is converted into an inflorescence meristem which has at least two distinct inflorescence branching steps before the spikelet meristem terminates in the production of a flower (floret. In model dicotyledonous species such successive conversions of meristem identities and the concentric arrangement of floral organs in specific whorls have both been shown to be genetically controlled. Using data from the Sugarcane Expressed Sequence Tag (EST Project (SUCEST database, we have identified all sugarcane proteins and genes putatively involved in reproductive meristem and flower development. Sequence comparisons of known flower-related genes have uncovered conserved evolutionary pathways of flower development and flower pattern formation between dicotyledons and monocotyledons, such as some grass species. We have paid special attention to the analysis of the MADS-box multigene family of transcription factors that together with the APETALA2 (AP2 family are the key elements of the transcriptional networks controlling plant reproductive development. Considerations on the evolutionary developmental genetics of grass flowers and their relation to the ABC homeotic gene activity model of flower development are also presented.

  13. Evaluation of special, functional and structural diversity of weeds community in pistachios (Pistacia vera L. orchards of Bardaskan County

    Directory of Open Access Journals (Sweden)

    S. Elahi

    2016-04-01

    Full Text Available To study weed species diversity and community structure in pistachio (Pistacia vera L. orchards in 33 orchards of 12 villages an investigation was conducted in Bardaskan County, Khorasan Razavi Province, Iran during 2008-2009. Weed population sampling was conducted in a w shape method using 1m² quadrate. The results showed that the weeds of pistachio orchards were belonging to 15 families and 44 species. dicotyledons (31 species were more than monocotyledons (13 species. Such as in this community, weed species of C3, C4, annual and perennial were 26, 18, 28 and 13, respectively. The majority of weed species were belonging to the plant families of chenopodiceae (9 species and poaceae (12 species amongst dicotyledons and monocotyledons, respectively. the most important species of monocotyledon annual weeds were including Echinochloa crus-gali, Digitaria sanguinlis, Setaria viridis and perennial weeds were including Cyperus routundus, Cynodon dactylon and convolvulus arvensis. Weed species were grouped in seven clusters for density average, frequency and uniformity (similarity 75 percent whereas in eight clusters for relative density average, relative frequency and relative uniformity (similarity 75 percent. Amplitude changes of Shannon-winter diversity index were between 2.3 and 0.16 and of Simpson dominant index were between 0.97 and 0.17. The difference among indices of biodiversity and dominant clusters were relative to scale and type of management practices.

  14. Loops in hierarchical channel networks

    Science.gov (United States)

    Katifori, Eleni; Magnasco, Marcelo

    2012-02-01

    Nature provides us with many examples of planar distribution and structural networks having dense sets of closed loops. An archetype of this form of network organization is the vasculature of dicotyledonous leaves, which showcases a hierarchically-nested architecture. Although a number of methods have been proposed to measure aspects of the structure of such networks, a robust metric to quantify their hierarchical organization is still lacking. We present an algorithmic framework that allows mapping loopy networks to binary trees, preserving in the connectivity of the trees the architecture of the original graph. We apply this framework to investigate computer generated and natural graphs extracted from digitized images of dicotyledonous leaves and animal vasculature. We calculate various metrics on the corresponding trees and discuss the relationship of these quantities to the architectural organization of the original graphs. This algorithmic framework decouples the geometric information from the metric topology (connectivity and edge weight) and it ultimately allows us to perform a quantitative statistical comparison between predictions of theoretical models and naturally occurring loopy graphs.

  15. Iron Requirement and Iron Uptake from Various Iron Compounds by Different Plant Species

    Science.gov (United States)

    Christ, Rudolf A.

    1974-01-01

    The Fe requirements of four monocotyledonous plant species (Avena sativa L., Triticum aestivum L., Oryza sativa L., Zea mays L.) and of three dicotyledonous species (Lycopersicum esculentum Mill., Cucumis sativus L., Glycine maxima (L.) Merr.) in hydroponic cultures were ascertained. Fe was given as NaFe-EDDHA chelate (Fe ethylenediamine di (O-hydroxyphenylacetate). I found that the monocotyledonous species required a substantially higher Fe concentration in the nutrient solution in order to attain optimum growth than did the dicotyledonous species. Analyses showed that the process of iron uptake was less efficient with the monocotyledonous species. When the results obtained by using chelated Fe were compared with those using ionic Fe, it was shown that the inefficient species were equally inefficient in utilizing Fe3+ ions. However, the differences between the efficient and the inefficient species disappeared when Fe2+ was used. This confirms the work of others who postulated that Fe3+ is reduced before uptake of chelated iron by the root. In addition, it was shown that reduction also takes place when Fe is used in ionic form. The efficiency of Fe uptake seems to depend on the efficiency of the root system of the particular plant species in reducing Fe3+. The removal of Fe from the chelate complex after reduction to Fe2+ seems to present no difficulties to the various plant species. PMID:16658933

  16. Functional morphology, biomechanics and biomimetic potential of stem-branch connections in Dracaena reflexa and Freycinetia insignis.

    Science.gov (United States)

    Masselter, Tom; Eckert, Sandra; Speck, Thomas

    2011-01-01

    Branching in plants is one of the most important assets for developing large arborescent growth forms with complex crowns. While the form and development of branching in gymnosperms and dicotyledonous trees is widely understood, very little is known about branching patterns and the structure of branch-stem-junctions in arborescent monocotyledons. For a better and quantitative understanding of the functional morphology of branch-stem-junctions in arborescent monocotyledons, we investigated the two species Dracaena reflexa and Freycinetia insignis. While D. reflexa is able to develop large arborescent forms with conspicuous crowns by anomalous secondary growth, F. insignis remains relatively small and is only capable of primary growth. Biomechanical investigations were performed by applying vertical loads up to rupture to lateral branches of both species. This allows the analysis of the fracture mechanics and the determination of the maximal force, stress and strain at rupture as well as the fracture toughness. Functional morphology was correlated with the mechanical behaviour of these plants and compared to data of other dicotyledonous trees. The high energy absorption found in the rupture process of lateral branches of D. reflexa and F. insignis makes them promising biological concept generators with a high potential for biomimetic implementation, i.e., for the development of branched fibre-reinforced technical composites. A wide range of constructional elements with branched (sub-)structures can be optimised by using solutions inspired by plant ramifications, e.g., in automotive and aerospace engineering, architecture, sports equipment and prosthetic manufacturing.

  17. Exclusion of UV-B radiation from normal solar spectrum on the growth of mung bean and maize

    International Nuclear Information System (INIS)

    Pal, M.; Sharma, A.; Abrol, Y.P.; Sengupta, U.K.

    1997-01-01

    The increase in UV-B radiation due to depletion of the ozone layer has potentially harmful effects on plant growth and performance. The bulk of these studies conducted in growth chambers, greenhouses or in the field use different types of exposure systems which may be responsible for differences in the sensitivity of a crop to UV-B radiation. A field study using selective filters to remove the UV-B portion of the solar spectrum was conducted with mung bean (a dicotyledonous C 3 plant) and maize (a monocotyledonous C 4 plant) to determine the sensitivity of these crop plants to ambient UV-B levels without disturbing the microenvironment. Mung bean was found to be sensitive to ambient UV-B levels in terms of leaf area development, plant height attained and net photosynthesis, while maize was found to be unaffected by ambient UV-B levels (22.8 |GmW cm −2 nm −1 ) found in Delhi, India (28°38′N, 77°13′E). The level of ambient UV-B radiation thus appears to be inhibitory for optimal growth of plants, especially dicotyledonous mung bean. (author)

  18. Herbicidal potential of ophiobolins produced by Drechslera gigantea.

    Science.gov (United States)

    Evidente, Antonio; Andolfi, Anna; Cimmino, Alessio; Vurro, Maurizio; Fracchiolla, Mariano; Charudattan, Raghavan

    2006-03-08

    Drechslera gigantea, a potential mycoherbicide of grass weeds, was isolated in Florida from naturally infected large crabgrass (Digitaria sanguinalis); it produces phytotoxic metabolites in liquid culture. The main metabolite was identified by spectroscopic methods and optical properties as ophiobolin A (1), a well-known phytotoxic sesterterpene produced by several phytopathogenic fungi of important crops and already extensively studied for its interesting biological activities. The other three minor metabolites proved to be related to ophiobolin A and were identified using the same techniques as 6-epi-ophiobolin A and 3-anhydro-6-epi-ophiobolin A (2 and 3) and ophiobolin I (4). Assayed on punctured detached leaves of several grass and dicotyledon weeds, ophiobolin A proved to be on average more phytotoxic as compared to the other related compounds. Some structural features appear to be important for the phytoxicity, such as the hydroxy group at C-3, the stereochemistry at C-6, and the aldehyde group at C-7. Furthermore, grass weeds usually proved to be more sensitive to the phytotoxins than dicotyledons, on which ophiobolin A caused the appearance of large necrosis even at the lowest concentration assayed. This is the first report about the production of ophiobolins from D. gigantea and of the proposed use as potential natural herbicides against grass weeds.

  19. SPECIES COMPOSITION, DISTRIBUTION, LIFE FORMS AND FOLK NOMENCLATURE OF FOREST AND COMMON LAND PLANTS OF WESTERN CHITWAN, NEPAL

    Science.gov (United States)

    Dangol, D. R.

    2012-01-01

    This paper enumerates 349 plant species belonging to 77 families of vascular plants collected in the winter seasons of 1996 and 2000 by the flora teams of the Population and Ecology Research Laboratory, Nepal. Of the total species, 249 species belong to dicotyledons, 87 species to monocotyledons and 13 species to pteridophytes. Among the families, dicotyledons contributed the highest number of families (55 in number) followed by monocotyledons and pteridophytes. In the study areas, species composition varies with the type of habitats in the study plots. Some species are unique in distribution. The highest unique species are contributed by common lands (87 spp.), followed by the Chitwan National Park forest (36 spp.) and Tikauli forest (32 spp.). Ageratum houstonianum Mill., Cynodon dactylon (L.) Pers., Imperata cylindrica (L.) Beauv., Rungia parviflora (Retz.) Nees, Saccharum spontaneum L. and Thelypteris auriculata (J. Sm.) K. Iwats are the most common species across all the research blocks. Of the listed plants, many plants have local names either in Nepalese or other tribal languages. Plants are named in different ways on the basis of habit, habitat, smell, taste, and morphological characters of the plants, which are also the basis of nomenclature in plant taxonomy. PMID:22962539

  20. [Spatial and temporal dynamics of the weed community in the Zoysia matrella lawn].

    Science.gov (United States)

    Liu, Jia-Qi; Li, You-Han; Zeng, Ying; Xie, Xin-Ming

    2014-02-01

    The heterogeneity of species composition is one of the main attributes in weed community dynamics. Based on species frequency and power law, this paper studied the variations of weed community species composition and spatial heterogeneity in a Zoysia matrella lawn in Guangzhou at different time. The results showed that there were 43 weed species belonging to 19 families in the Z. matrella lawn from 2007 to 2009, in which Gramineae, Compositae, Cyperaceae and Rubiaceae had a comparative advantage. Perennial weeds accounted for the largest proportion of weeds and increased gradually in the three years. Weed communities distributed in higher heterogeneity than in a random model. Dominant weeds varied with season and displayed regularity in the order of 'dicotyledon-monocotyledon-dicotyledon weeds' and 'perennial-annual-perennial weeds'. The spatial heterogeneity of weed community in Z. matrella lawn was higher in summer than in winter. The diversity and evenness of weed community were higher in summer and autumn than in winter and spring. The number of weed species with high heterogeneity in summer was higher than in the other seasons. The spatial heterogeneity and diversity of weed community had no significant change in the three years, while the evenness of weed community had the tendency to decline gradually.

  1. WEED SURVEYING OF PHACELIA (PHACELIA TANACETIFOLIA L.) AND EVALUATING THE EFFICIENCY OF THE WEED CONTROL.

    Science.gov (United States)

    Horváth, E; Szabó, R

    2014-01-01

    The experiment was set up in an area of 9 ha that was split into 4 plots: in plot 1 the row spacing was 12 cm and the seeding rate was 10 kg; in plot 2 the row spacing was 24 cm and the seeding rate was 10 kg; in plot 3 the row spacing was 24 cm and the seeding rate was 8 kg; in plot 4 the row spacing was 12 cm and the seeding rate was 8 kg. After the weed surveying, the total weed coverage was established as follows: in plot 1 the total weed coverage was 11.34%, in plot 2 it was 12.3%, in plot 3 it was 18%, and in plot 4 the total weed coverage was 15%. Based on the weed survey, on the test area the following dicotyledon weeds belonging to the T4 Raunkiaer plant life-form category occupied the highest percentage: heal-all, black-bindweed, goosefoot. The proportion of the perennial dicotyledons: field bindweed (G3), tuberous pea (G1), white campion (H3) was negligible. In all four cases the weed control was executed using the same herbicide in the same doses and with regard to the weed species it showed the same level of efficiency. The smaller row spacing and higher seeding rate has a beneficial effect on the weed suppressing capacity of the crop, the crop's weed suppressing capacity is better and the development of the weeds becomes worse.

  2. Quantifying loopy network architectures.

    Directory of Open Access Journals (Sweden)

    Eleni Katifori

    Full Text Available Biology presents many examples of planar distribution and structural networks having dense sets of closed loops. An archetype of this form of network organization is the vasculature of dicotyledonous leaves, which showcases a hierarchically-nested architecture containing closed loops at many different levels. Although a number of approaches have been proposed to measure aspects of the structure of such networks, a robust metric to quantify their hierarchical organization is still lacking. We present an algorithmic framework, the hierarchical loop decomposition, that allows mapping loopy networks to binary trees, preserving in the connectivity of the trees the architecture of the original graph. We apply this framework to investigate computer generated graphs, such as artificial models and optimal distribution networks, as well as natural graphs extracted from digitized images of dicotyledonous leaves and vasculature of rat cerebral neocortex. We calculate various metrics based on the asymmetry, the cumulative size distribution and the Strahler bifurcation ratios of the corresponding trees and discuss the relationship of these quantities to the architectural organization of the original graphs. This algorithmic framework decouples the geometric information (exact location of edges and nodes from the metric topology (connectivity and edge weight and it ultimately allows us to perform a quantitative statistical comparison between predictions of theoretical models and naturally occurring loopy graphs.

  3. Characterization of diferuloylated pectic polysaccharides from quinoa (Chenopodium quinoa WILLD.).

    Science.gov (United States)

    Wefers, Daniel; Gmeiner, Bianca M; Tyl, Catrin E; Bunzel, Mirko

    2015-08-01

    In plants belonging to the order of Caryophyllales, pectic neutral side chains can be substituted with ferulic acid. The ability of ferulic acid to form intra- and/or intermolecular polysaccharide cross-links by dimerization was shown by the isolation and characterization of diferulic acid oligosaccharides from monocotyledonous plants. In this study, two diferulic acid oligosaccharides were isolated from the enzymatic hydrolyzate of seeds of the dicotyledonous pseudocereal quinoa by gel permeation chromatography and preparative HPLC and unambiguously identified by LC-MS(2) and 1D/2D NMR spectroscopy. The isolated oligosaccharides are comprised of 5-5- and 8-O-4-diferulic acid linked to the O2-position of the nonreducing residue of two (1→5)-linked arabinobioses. To get insight into the structure and the degree of phenolic acid substitution of the diferuloylated polysaccharides, polymeric sugar composition, glycosidic linkages, and polysaccharide-bound monomeric phenolic acids and diferulic acids were analyzed. This study demonstrates that diferulic acids are involved into intramolecular and/or intermolecular cross-linking of arabinan chains and may have a major impact on cell wall architecture of quinoa and other dicotyledonous plants of the order of Caryophyllales. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. Road verges and winter wheat fields as resources for wild bees in agricultural landscapes

    DEFF Research Database (Denmark)

    Henriksen, Casper Christian I; Langer, Vibeke

    2013-01-01

    The effects of farming system on plant density and flowering of dicotyledonous herbs of high value for bees were investigated in 14 organic and 14 conventional winter wheat fields and adjacent road verges. The organic and conventional winter wheat fields/road verges were paired based on the perce......The effects of farming system on plant density and flowering of dicotyledonous herbs of high value for bees were investigated in 14 organic and 14 conventional winter wheat fields and adjacent road verges. The organic and conventional winter wheat fields/road verges were paired based...... on the percentage of semi-natural habitats in the surrounding landscape at 1-km scale. Mean density of high value bee plants per Raunkiaer circle was significantly higher in organic winter wheat fields and their adjacent road verges than in their conventionally farmed counterparts. The effect of organic farming...... was even more pronounced on the flowering stage of high value bee plants, with 10-fold higher mean density of flowering plants in organic fields than in conventional fields and 1.9-fold higher in road verges bordering organic fields than in those bordering conventional fields. In summary, organic farming...

  5. Quantitative analysis of microtubule orientation in interdigitated leaf pavement cells.

    Science.gov (United States)

    Akita, Kae; Higaki, Takumi; Kutsuna, Natsumaro; Hasezawa, Seiichiro

    2015-01-01

    Leaf pavement cells are shaped like a jigsaw puzzle in most dicotyledon species. Molecular genetic studies have identified several genes required for pavement cells morphogenesis and proposed that microtubules play crucial roles in the interdigitation of pavement cells. In this study, we performed quantitative analysis of cortical microtubule orientation in leaf pavement cells in Arabidopsis thaliana. We captured confocal images of cortical microtubules in cotyledon leaf epidermis expressing GFP-tubulinβ and quantitatively evaluated the microtubule orientations relative to the pavement cell growth axis using original image processing techniques. Our results showed that microtubules kept parallel orientations to the growth axis during pavement cell growth. In addition, we showed that immersion treatment of seed cotyledons in solutions containing tubulin polymerization and depolymerization inhibitors decreased pavement cell complexity. Treatment with oryzalin and colchicine inhibited the symmetric division of guard mother cells.

  6. Production of Phytotoxic Metabolite Using Biphasic Fermentation System from Strain C1136 of Lasiodiplodia pseudotheobromae, a Potential Bioherbicidal Agent

    Directory of Open Access Journals (Sweden)

    Charles Oluwaseun ADETUNJI

    2017-09-01

    Full Text Available Formulation of effective and environmental friendly bioherbicides depends on the type of fermentation medium used for the production of phytotoxic metabolites. The effect of biomass, colony forming unit and the phytotoxic metabolite produced from the biphasic fermentation was carried out, while the phytotoxic metabolite was tested in vivo and in-vitro on Echinochola crus-galli and dicotyledonous Chromolaena odorata. The mutant strain of Lasiodiplodia pseudotheobromae C1136 (Lp90 produced the highest amount of conidia and the largest necrotic area on the two tested weeds when compared to its wild strain in the different biphasic media combinations. The study revealed that the biphasic system containing PDB + rice produced the highest bioherbicidal activities. Therefore, the phytotoxic metabolites from strain C1136 are suggested for large scale production of bioherbicides for the management of weeds in conventional farming to improve yield and enhance food security.

  7. Preliminary description of the diet of Hippopotamus amphibius L. in Loango National Park (Gabon

    Directory of Open Access Journals (Sweden)

    Michez, A.

    2013-01-01

    Full Text Available Due to the paucity of suitable habitat, hippos are very rare in the Congo Bassin. Compared to East-African populations, Central African populations of hippos have been less studied. Information found in the literature regarding the animal's basic ecology is limited. This study focuses on the description of the diet of an isolated hippo population in Loango National Park (Gabon, comparing faecal analysis with a reference collection of herbaceous species from the savannas. The effectiveness of using faecal analysis versus using the floristic description of hippos' pastures was demonstrated. The most frequent herbaceous species identified in faeces samples were Paspalum vaginatum, Axonopus compressus, Stenotaphrum secundatum (Poaceae and Desmodium triflorum (Fabaceae. The voluntary consumption of a dicotyledonous species (Desmodium triflorum is novel for this species.

  8. Distribution of the horticultural plants in togo according to decorative parts and medical value

    International Nuclear Information System (INIS)

    Radji, R.; Kokou, K

    2014-01-01

    In Togo, more than six hundred species of horticultural plants were identified belonging to approximately 59% of Dicotyledons (49 families, 145 genera and 315 species) and 37.37% were monocotyledons. Pteridophytes and gymnosperms accounted for less than 6%. The spectrum of morphological types indicated that herbs accounted for 55%, while trees and shrubs were 15%. More than 50% of the species of this flora were exotic. The species distributions were made according to their decorative parts and their place of use. Across the country, 55 plantings were recorded and unevenly distributed in cities. Apart from their ornamental use, these plants were used for feeding, traditional and industrial cosmetics in psychotherapy, horticultural therapy and in traditional and conventional medicine preparation. In this study, 79 species from 39 families are reported as medicinal plants. The Apocynaceae and Fabaceae (6 species), the Euphorbiaceae and Liliaceae (5 species), the Arecaceae and Verbenaceae (4 species) were the best represented families. (author)

  9. Synthesis and phytotoxic activity of 1,2,3-triazole derivatives

    Energy Technology Data Exchange (ETDEWEB)

    Borgati, Thiago F.; Alves, Rosemeire B., E-mail: thfborgati@gmail.com, E-mail: rosebrondi@yahoo.com.br [Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG (Brazil). Departamento de Quimica; Teixeira, Robson R.; Freitas, Rossimiriam P. de; Perdigao, Thays G.; Silva, Silma F. da; Santos, Aline Aparecida dos [Universidade Federal de Vicosa, MG (Brazil). Departamento de Quimica; Bastidas, Alberto de Jesus O. [Laboratorio de Quimica Ecologica, Departamento de Quimica, Universidad de Los Andes, Nucleo Universitario Pedro Rincon Gutierrez, Merida (Viet Nam)

    2013-06-15

    Thirteen triazole derivatives bearing halogenated benzyl substituents were synthesized using the Cu-catalyzed azide-alkyne cycloaddition (CuAAC), a leading example of the click chemistry approach, as the key step. The biological activity of the compounds was evaluated, and it was found that these compounds interfere with the germination and radicle growth (shoots and roots) of two dicotyledonous species, Lactuca sativa and Cucumis sativus, and one monocotyledonous species, Allium cepa. The compounds showed predominantly inhibitory activity related to the evaluated species mainly at the concentration of 10{sup -4} mol L{sup -1}. Some of them presented inhibitory activity comparable to 2,4-D (2,4-dichlorophenoxyacetic acid), used as positive control. (author)

  10. Synthesis and phytotoxic activity of 1,2,3-triazole derivatives

    International Nuclear Information System (INIS)

    Borgati, Thiago F.; Alves, Rosemeire B.

    2013-01-01

    Thirteen triazole derivatives bearing halogenated benzyl substituents were synthesized using the Cu-catalyzed azide-alkyne cycloaddition (CuAAC), a leading example of the click chemistry approach, as the key step. The biological activity of the compounds was evaluated, and it was found that these compounds interfere with the germination and radicle growth (shoots and roots) of two dicotyledonous species, Lactuca sativa and Cucumis sativus, and one monocotyledonous species, Allium cepa. The compounds showed predominantly inhibitory activity related to the evaluated species mainly at the concentration of 10 -4 mol L -1 . Some of them presented inhibitory activity comparable to 2,4-D (2,4-dichlorophenoxyacetic acid), used as positive control. (author)

  11. M1 chimerism following mutagen treatment of seeds in rice and some other cereals

    International Nuclear Information System (INIS)

    Kawai, T.

    1983-01-01

    Articles reporting on M 1 chimerism following treatment of seed with mutagen in cereals were mostly published in the 1960's. Rice is a good material for making such studies because of its relatively large number of seeds per panicle, rather easily identifiable tillering and panicle branching systems and uniform growth after seedling transplanting. The present article summarizes results of studies on M 1 chimerism in rice and some other cereals which may serve as reference information in discussing M 1 chimerism of those plant species showing different development patterns, as dicotyledonous plants, following treatment of seed with mutagen. Studies on M 1 chimerism provide not only knowledge of the sporophyte development but also basic information for developing methods of harvesting M 2 seed which provide the maximum numbers of mutants of different origins in a limited number of M 2 plants. (author)

  12. Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor.

    Science.gov (United States)

    Hegenauer, Volker; Fürst, Ursula; Kaiser, Bettina; Smoker, Matthew; Zipfel, Cyril; Felix, Georg; Stahl, Mark; Albert, Markus

    2016-07-29

    Parasitic plants are a constraint on agriculture worldwide. Cuscuta reflexa is a stem holoparasite that infests most dicotyledonous plants. One exception is tomato, which is resistant to C. reflexa We discovered that tomato responds to a small peptide factor occurring in Cuscuta spp. with immune responses typically activated after perception of microbe-associated molecular patterns. We identified the cell surface receptor-like protein CUSCUTA RECEPTOR 1 (CuRe1) as essential for the perception of this parasite-associated molecular pattern. CuRe1 is sufficient to confer responsiveness to the Cuscuta factor and increased resistance to parasitic C. reflexa when heterologously expressed in otherwise susceptible host plants. Our findings reveal that plants recognize parasitic plants in a manner similar to perception of microbial pathogens. Copyright © 2016, American Association for the Advancement of Science.

  13. Restricted cell elongation in Arabidopsis hypocotyls is associated with a reduced average pectin esterification level.

    Science.gov (United States)

    Derbyshire, Paul; McCann, Maureen C; Roberts, Keith

    2007-06-17

    Cell elongation is mainly limited by the extensibility of the cell wall. Dicotyledonous primary (growing) cell walls contain cellulose, xyloglucan, pectin and proteins, but little is known about how each polymer class contributes to the cell wall mechanical properties that control extensibility. We present evidence that the degree of pectin methyl-esterification (DE%) limits cell growth, and that a minimum level of about 60% DE is required for normal cell elongation in Arabidopsis hypocotyls. When the average DE% falls below this level, as in two gibberellic acid (GA) mutants ga1-3 and gai, and plants expressing pectin methyl-esterase (PME1) from Aspergillus aculeatus, then hypocotyl elongation is reduced. Low average levels of pectin DE% are associated with reduced cell elongation, implicating PMEs, the enzymes that regulate DE%, in the cell elongation process and in responses to GA. At high average DE% other components of the cell wall limit GA-induced growth.

  14. Nopal cactus (Opuntia ficus-indica) as a source of bioactive compounds for nutrition, health and disease.

    Science.gov (United States)

    El-Mostafa, Karym; El Kharrassi, Youssef; Badreddine, Asmaa; Andreoletti, Pierre; Vamecq, Joseph; El Kebbaj, M'Hammed Saïd; Latruffe, Norbert; Lizard, Gérard; Nasser, Boubker; Cherkaoui-Malki, Mustapha

    2014-09-17

    Opuntia ficus-indica, commonly referred to as prickly pear or nopal cactus, is a dicotyledonous angiosperm plant. It belongs to the Cactaceae family and is characterized by its remarkable adaptation to arid and semi-arid climates in tropical and subtropical regions of the globe. In the last decade, compelling evidence for the nutritional and health benefit potential of this cactus has been provided by academic scientists and private companies. Notably, its rich composition in polyphenols, vitamins, polyunsaturated fatty acids and amino acids has been highlighted through the use of a large panel of extraction methods. The identified natural cactus compounds and derivatives were shown to be endowed with biologically relevant activities including anti-inflammatory, antioxidant, hypoglycemic, antimicrobial and neuroprotective properties. The present review is aimed at stressing the major classes of cactus components and their medical interest through emphasis on some of their biological effects, particularly those having the most promising expected health benefit and therapeutic impacts.

  15. Nopal Cactus (Opuntia ficus-indica as a Source of Bioactive Compounds for Nutrition, Health and Disease

    Directory of Open Access Journals (Sweden)

    Karym El-Mostafa

    2014-09-01

    Full Text Available Opuntia ficus-indica, commonly referred to as prickly pear or nopal cactus, is a dicotyledonous angiosperm plant. It belongs to the Cactaceae family and is characterized by its remarkable adaptation to arid and semi-arid climates in tropical and subtropical regions of the globe. In the last decade, compelling evidence for the nutritional and health benefit potential of this cactus has been provided by academic scientists and private companies. Notably, its rich composition in polyphenols, vitamins, polyunsaturated fatty acids and amino acids has been highlighted through the use of a large panel of extraction methods. The identified natural cactus compounds and derivatives were shown to be endowed with biologically relevant activities including anti-inflammatory, antioxidant, hypoglycemic, antimicrobial and neuroprotective properties. The present review is aimed at stressing the major classes of cactus components and their medical interest through emphasis on some of their biological effects, particularly those having the most promising expected health benefit and therapeutic impacts.

  16. Transfer equations for cesium-137 for coniferous forest understorey plant species

    International Nuclear Information System (INIS)

    Wirth, E.; Hiersche, L.; Kammerer, L.; Krajewska, G.; Krestel, R.; Mahler, S.; Roemmelt, R.

    1994-01-01

    The transfer of cesium-137 from organic soil horizons to understorey vegetation has been studied on two coniferous tree sites. In total, 14 different plants preferably taking up their nutrients from organic soil layers were taken into account. A relatively good correlation was found to exist between the transfer factor (Bq/kg plant dry wt./Bq/kg O-horizons dry wt.) for dicotyledons (r=0.51) and berry plants (r=0.63), but there was no correlation for monocotyledons (r= 0 .15). The correlations could not be improved by additionally taking potassium in plant and soil into account. These results are discussed in respect to different parameters influencing the amount of cesium-137 uptake, including plants supported by mycorrhizal fungi

  17. In silico identification and analysis of phytoene synthase genes in plants.

    Science.gov (United States)

    Han, Y; Zheng, Q S; Wei, Y P; Chen, J; Liu, R; Wan, H J

    2015-08-14

    In this study, we examined phytoene synthetase (PSY), the first key limiting enzyme in the synthesis of carotenoids and catalyzing the formation of geranylgeranyl pyrophosphate in terpenoid biosynthesis. We used known amino acid sequences of the PSY gene in tomato plants to conduct a genome-wide search and identify putative candidates in 34 sequenced plants. A total of 101 homologous genes were identified. Phylogenetic analysis revealed that PSY evolved independently in algae as well as monocotyledonous and dicotyledonous plants. Our results showed that the amino acid structures exhibited 5 motifs (motifs 1 to 5) in algae and those in higher plants were highly conserved. The PSY gene structures showed that the number of intron in algae varied widely, while the number of introns in higher plants was 4 to 5. Identification of PSY genes in plants and the analysis of the gene structure may provide a theoretical basis for studying evolutionary relationships in future analyses.

  18. Optimization of Neutral Comet Assay for studying DNA double-strand breaks in pea and wheat

    Directory of Open Access Journals (Sweden)

    Ivelina Nikolova

    2013-01-01

    Full Text Available This study describes an adaptation of the Comet assay under neutral conditions for mono- and dicotyledonous plants pea (Pisum sativum L. and wheat (Triticum aestivum L.. Modifications concern lysis and electrophoresis steps, respectively. Electrophoresis was carried out varying the intensity of the electric field. A linear relationship between the percentages of DNA in the tail from control background with alteration of intensity was found. Trypan blue dye exclusion test was used in order to determine the intactness of nuclear membrane of the isolated nuclei from both plant model systems. Assessment was conducted on non-irradiated and irradiated nuclei on a monolayer with three doses of UVC. It was found that the share of intact nuclei (trypan blue negative ones is about 95% in controls. Gradual dose-related increase of damaged nuclei was observed in both species, reaching statistical significance only at the higher dose applied.

  19. Etude des groupements d'adventices dans le Maroc occidental

    Directory of Open Access Journals (Sweden)

    Douira, A.

    2010-01-01

    Full Text Available Study of the weeds groupings in western Morocco. An ecological floristic study was carried out in the principal areas of Morocco severely infested by the sterile oats. From 110 readings taken in cereals, the 324 listed species belong to 47 botanical families including 39 dicotyledons. Six families: Asteraceae, Fabaceae, Poaceae, Brassicaceae, Caryophyllaceae and Apiaceae add up 59% of the total staff complement alone. The biological aspect shows a prevalence of the therophytes with 80%, followed by the hemicryptophytes and the geophytes with respectively 11 and 7%. Mediterranean taxa are dominating with 62% of the total staff complement. The taking into account of the index partial of noxiousness made it possible to release 27 problematic species whose Avena sterilis, Phalaris paradoxa, Phalaris brachystachys, Scolymus maculates, Lolium multiflorum, Papaver rhoeas and Lolium rigidum are most harmful by far. The factorial analysis of correspondences (A.F.C., by the means of the edaphic variables, made it possible to highlight six ecological groups.

  20. The Cer-cqu gene cluster determines three key players in a β-diketone synthase polyketide pathway synthesizing aliphatics in epicuticular waxes

    DEFF Research Database (Denmark)

    Schneider, Lizette Marais; Adamski, Nikolai M.; Christensen, Caspar Elo

    2016-01-01

    identification of mutants in their synthesis or transport. The present study discloses three such Eceriferum (cer) genes in barley - Cer-c, Cer-q and Cer-u - known to be tightly linked and functioning in a biochemical pathway forming dominating amounts of β-diketone and hydroxy-β-diketones plus some esterified...... alkan-2-ols. These aliphatics are present in many Triticeae as well as dicotyledons such as Eucalyptus and Dianthus. Recently developed genomic resources and mapping populations in barley defined these genes to a small region on chromosome arm 2HS. Exploiting Cer-c and -u potential functions pinpointed...... five candidates, of which three were missing in apparent cer-cqu triple mutants. Sequencing more than 50 independent mutants for each gene confirmed their identification. Cer-c is a chalcone synthase-like polyketide synthase, designated diketone synthase (DKS), Cer-q is a lipase/carboxyl transferase...

  1. Photosynthesis intensity of poic plants of left bank Ukraine’s Forest–steppe

    Directory of Open Access Journals (Sweden)

    L. D. Orlova

    2010-01-01

    Full Text Available The intensity of photosynthesis is studied in species of 20 families of Magnoliophyta (Angiospermae. It is revealed that in general, dicotyledons have a higher rate in comparison with the monocotyledonous plant by 10.0 %. The average values with limits from 3.6 to 39.3 mg СО2/dm2 per year are given. The studied species are classified by the ability to assimilate СО2. The rate dependence on a biomorph and hygromorph is determined. It is stressed that rhizome species have sufficient and high values of that rate. The dynamics of values during ontogenesis and impact of weather conditions on them are shown.

  2. Study of Allelopathic Interaction of Wheat (Triticum aestivum L. and Some Weed Species Using Equal - Compartment – Agar Method

    Directory of Open Access Journals (Sweden)

    M. R Labbafi

    2012-02-01

    Full Text Available There are many methods for weed management one of them is putting allelopathic and cover crop in weed management programs. In order to study the effect of sowing time (delayed sowing, synchronic sowing and wheat cultivars (Shiraz, Roshan, Tabasi, Niknejad on allelopathic interaction of wheat and weed species (Secale cereale L., Avena ludoviciana L.: monocotyledon, Convolvulus arvensis L. and Vicia villosa L.: dicotyledon, an experiment was conducted with factorial arrangement in a completely randomized design and 4 replications. According to the results, the inhibitory effect of wheat on monocot weeds (oat and rye was more than in synchronic sowing and the inhibitory effect of wheat on dicot weeds (bindweed and vetch was more than in delayed sowing. Effect of wheat cultivars on rye and oat (except hypocotyls length was inhibitory and that of vetch was stimulatory. Hypocotyls length showed the most sensitivity to released allelochemicals from wheat cultivars, because root has the most contact with allelochemicals in the soil.

  3. Functional genomic analysis supports conservation of function among cellulose synthase-like a gene family members and suggests diverse roles of mannans in plants

    DEFF Research Database (Denmark)

    Liepman, Aaron H; Nairn, C Joseph; Willats, William G T

    2007-01-01

    from Arabidopsis (Arabidopsis thaliana), guar (Cyamopsis tetragonolobus), and Populus trichocarpa catalyze beta-1,4-mannan and glucomannan synthase reactions in vitro. Mannan polysaccharides and homologs of CslA genes appear to be present in all lineages of land plants analyzed to date. In many plants......, the CslA genes are members of extended multigene families; however, it is not known whether all CslA proteins are glucomannan synthases. CslA proteins from diverse land plant species, including representatives of the mono- and dicotyledonous angiosperms, gymnosperms, and bryophytes, were produced...... they are prevalent at cell junctions and in buds. Taken together, these results demonstrate that members of the CslA gene family from diverse plant species encode glucomannan synthases and support the hypothesis that mannans function in metabolic networks devoted to other cellular processes in addition to cell wall...

  4. On the use of dorsiventral reflectance asymmetry of hornbeam (Carpinus betulus L.) leaves in air pollution estimation.

    Science.gov (United States)

    Brackx, Melanka; Verhelst, Jolien; Scheunders, Paul; Samson, Roeland

    2017-08-25

    This study examines the role of dorsiventral leaf measurements in reflectance-based air quality estimation. The dorsiventral asymmetry is used to describe the difference between the upper (adaxial) and lower (abaxial) leaf side. Spectral characteristics of dorsiventral asymmetry and both adaxial and abaxial leaf reflectance are investigated for a typical dicotyledonous species Carpinus betulus used in an urban environment. The link with traffic-related air pollution is established and the potential for monitoring of air quality is evaluated. We conclude that dorsiventral reflectance asymmetry is a factor that should not be ignored in canopy measurements and modeling. On the other hand, the benefits of dorsiventral asymmetry indices as a tool for reflectance-based air quality seem limited.

  5. Development of anthers and pollen in Brazilian heterostylic species of Erythroxylum (Erythroxylaceae): an ecological approach

    International Nuclear Information System (INIS)

    Silva, L.D.; Fernandes, C. L.

    2016-01-01

    This study describes the development of anthers and pollen in heterostylic flowers of two species of Erythroxylum. The features of anthers and their developmental pattern, which is of the dicotyledonous type, do not vary according to morphs or species. The pollen grains of both morphs show differences in their morphology, development, and content stored as a reserve source. In both species, thrum (short-styled) flowers presented bicellular pollen grains, while pin (long-styled) ones yielded bi- and tricellular pollen grains. The presence of inviable pollen grains in the two flower morphs of both species and the malformation of one of the four microsporanges in the thrum flowers of E. campestre are noteworthy. We verified that features found both in the anther wall and in the pollen grains could be related to the reproductive success and adaptation of the species to the Brazilian savanna biome. (author)

  6. Cutting weeds with a CO2 laser

    DEFF Research Database (Denmark)

    Heisel, T.; Schou, Jørgen; Christensen, S.

    2001-01-01

    Stems of Chenopodium album. and Sinapis arvensis. and leaves of Lolium perenne. were cut with a CO2 laser or with a pair of scissors. Treatments were carried out on greenhouse-grown pot plants at three different growth stages and at two heights. Plant dry matter was measured 2 to 5 weeks after...... treatment. The relationship between dry weight and laser energy was analysed using a non-linear dose-response regression model. The regression parameters differed significantly between the weed species. At all growth stages and heights S. arvensis was more difficult to cut with a CO2 laser than C. album....... When stems were cut below the meristems, 0.9 and 2.3 J mm(-1) of CO2 laser energy dose was sufficient to reduce by 90% the biomass of C. album and S. arvensis respectively. Regrowth appeared when dicotyledonous plant stems were cut above meristems, indicating that it is important to cut close...

  7. Plant growth-promoting bacterium Acinetobacter calcoaceticus P23 increases the chlorophyll content of the monocot Lemna minor (duckweed) and the dicot Lactuca sativa (lettuce).

    Science.gov (United States)

    Suzuki, Wakako; Sugawara, Masayuki; Miwa, Kyoko; Morikawa, Masaaki

    2014-07-01

    Acinetobacter calcoaceticus P23 is a plant growth-promoting bacterium that was isolated from the surface of duckweed (Lemna aoukikusa). The bacterium was observed to colonize on the plant surfaces and increase the chlorophyll content of not only the monocotyledon Lemna minor but also the dicotyledon Lactuca sativa in a hydroponic culture. This effect on the Lactuca sativa was significant in nutrient-poor (×1/100 dilution of H2 medium) and not nutrient-rich (×1 or ×1/10 dilutions of H2 medium) conditions. Strain P23 has the potential to play a part in the future development of fertilizers and energy-saving hydroponic agricultural technologies. Copyright © 2013 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  8. Discovery of the first maize-infecting mastrevirus in the Americas using a vector-enabled metagenomics approach.

    Science.gov (United States)

    Fontenele, Rafaela S; Alves-Freitas, Dione M T; Silva, Pedro I T; Foresti, Josemar; Silva, Paulo R; Godinho, Márcio T; Varsani, Arvind; Ribeiro, Simone G

    2018-01-01

    The genus Mastrevirus (family Geminiviridae) is composed of single-stranded DNA viruses that infect mono- and dicotyledonous plants and are transmitted by leafhoppers. In South America, there have been only two previous reports of mastreviruses, both identified in sweet potatoes (from Peru and Uruguay). As part of a general viral surveillance program, we used a vector-enabled metagenomics (VEM) approach and sampled leafhoppers (Dalbulus maidis) in Itumbiara (State of Goiás), Brazil. High-throughput sequencing of viral DNA purified from the leafhopper sample revealed mastrevirus-like contigs. Using a set of abutting primers, a 2746-nt circular genome was recovered. The circular genome has a typical mastrevirus genome organization and shares 99% pairwise identity with the one from the leafhopper. This is the first report of a maize-infecting mastrevirus in the Americas, the first identified in a non-vegetatively propagated mastrevirus host in South America, and the first mastrevirus to be identified in Brazil.

  9. Fatty acid composition, fat soluble vitamin concentrations and oxidative stability in bovine milk produced on two pastures with different botanical composition

    DEFF Research Database (Denmark)

    Adler, S A; Dahl, A V; Jensen, Søren Krogh

    2013-01-01

    to oxidation. Two groups of 8 multiparous Norwegian Red dairy cows [mean (standard deviation); 599 (45.1) kg body weight, 73 (15.0) d in milk, 29.9 (2.90) kg milk/d at experiment start] grazed either a short-term pasture (SP) or a long-term pasture (LP). Both pastures were organically managed, meaning......Previous research has shown that grazing pastures compared to feeding preserved forages has large impact on milk fatty acid (FA) composition, but differences between grazing red clover (Trifolium pratense L.) or white clover (Trifolium repens L.) are small, whereas the herbage proportions...... of dicotyledon botanical families is positively correlated with the milk-fat proportions of total polyunsaturated FA when grazing pastures in the Alps. The objective of the present study was to investigate the influence of botanically different pastures on bovine milk composition and milk susceptibility...

  10. ALELOPATIA DE Arctium minus BERNH (ASTERACEAE NA GERMINAÇÃO E CRESCIMENTO RADICULAR DE SORGO E PEPINO

    Directory of Open Access Journals (Sweden)

    Valdenir José Belinelo

    2008-01-01

    Full Text Available The objectives of this work were identified and characterize the allelopatic activity of extracts obtained from Arctium minus (Hill Bernh (Asteraceae. The fitotoxic activity of organic extracts (1 e 100 mg.L-1 and aqueous extract (5,00 e 0,05% m/v on the germination and radicular growth of the monocotyledon Sorghum bicolor L. (sorghum, and the dicotyledon Cucumis sativus L. (cucumber were evaluated. The results showed the presence of allelopatic activity variable in according to the extract concentration and with the target plant. The intensity of induced inhibitory effect was higher for the ethanolic extract in concentration of 100 mg.L-1 for Sorghum bicolor L. The results also indicates the existence of the potential use of Arctium minus (Hill Bernh ethanolic extract as a natural herbicide and open perspectives for the research of the constituent(s with higher allelopatic activity.

  11. Increasing efficacy of graminicides with a forward angled spray

    DEFF Research Database (Denmark)

    Jensen, Peter Kryger

    2012-01-01

    Control of annual grass species with vertically oriented leaves in agricultural crops by application of foliar acting herbicides with conventional hydraulic sprayers can be increased using forward angled nozzles. Changing the spray angle from the normally predominantly vertical spray towards...... an angled spray increases the potential target size of vertically oriented targets. This theory was tested in field experiments from 2005 to 2009 investigating control of three different grass species and a dicotyledonous weed species at early growth stages using foliar acting herbicides. Lolium perenne...... efficacy on L. perenne at early growth stages using nozzles with different spray quality, at different driving speeds and in different wind conditions. Similarly graminicide efficacy was increased when nozzles were angled 60° forward controlling A. myosuroides. Experiments investigating control of the two...

  12. Intracellular localization of hydroxyproline-rich glycoprotein biosynthesis

    International Nuclear Information System (INIS)

    Robinson, D.G.; Andreae, M.; Glas, A.R.; Sauer, A.

    1984-01-01

    The structural proteins of plant cell walls are glycoproteins characterized by O-glucosidic linkages to hydroxyproline or serine. Proline, not hydroxyproline, is the translatable amino acid in hydroxyproline-rich glycoproteins (HRGP). Hydroxylation and arabinosylation of proline are sequential, post-translational events. Because of this, there is no a priori reason for expecting HRGP synthesis to follow the well-established route for secretory and plasma membrane (PM) glycoproteins, i.e., from endoplasmic reticulum (ER) via the Golgi apparatus (GA) to the PM. In this paper, two plausible alternatives for HRGO secretion are examined. Because a feature of the majority of dicotyledons is overlapping GA and PM regions in sucrose density gradients, the authors have used two monocotyledonous systems to determine the distribution of HRGP and enzyme activity

  13. A CACGTG motif of the Antirrhinum majus chalcone synthase promoter is recognized by an evolutionarily conserved nuclear protein

    International Nuclear Information System (INIS)

    Staiger, D.; Kaulen, H.; Schell, J.

    1989-01-01

    In the chalcone synthase gene of Antirrhinum majus (snapdragon), 150 base pairs of the 5' flanking region contain cis-acting signals for UV light-induced expression. A nuclear factor, designated CG-1, specifically recognizes a hexameric motif with internal dyad symmetry, CACGTG, located within this light-responsive sequence. Binding of CG-1 is influenced by C-methylation of the CpG dinucleotide in the recognition sequence. CG-1 is a factor found in a variety of dicotyledonous plant species including Nicotiana tabacum, A. majus, Petunia hybrida, Arabidopsis thaliana, and Glycine max. CACGTG motifs contained within trans-acting factor recognition sites in various other plant promoters can interact with CG-1. In addition, the binding site of the human adenovirus major late transcription factor USF can compete for CG-1 binding to the chalcone synthase promoter. This suggests an evolutionary conservation of trans-acting factor recognition sites involved in divergent mechanisms of gene control. (author)

  14. Bacteria from wheat and cucurbit plant roots metabolize PAHs and aromatic root exudates: Implications for rhizodegradation.

    Science.gov (United States)

    Ely, Cairn S; Smets, Barth F

    2017-10-03

    The chemical interaction between plants and bacteria in the root zone can lead to soil decontamination. Bacteria that degrade polycyclic aromatic hydrocarbons (PAHs) have been isolated from the rhizospheres of plant species with varied biological traits; however, it is not known what phytochemicals promote contaminant degradation. One monocot and two dicotyledon plants were grown in PAH-contaminated soil from a manufactured gas plant (MGP) site. A phytotoxicity assay confirmed greater soil decontamination in rhizospheres when compared to bulk soil controls. Bacteria were isolated from plant roots (rhizobacteria) and selected for growth on anthracene and chrysene on PAH-amended plates. Rhizosphere isolates metabolized 3- and 4-ring PAHs and PAH catabolic intermediates in liquid incubations. Aromatic root exudate compounds, namely flavonoids and simple phenols, were also substrates for isolated rhizobacteria. In particular, the phenolic compounds-morin, caffeic acid, and protocatechuic acid-appear to be linked to bacterial degradation of 3- and 4-ring PAHs in the rhizosphere.

  15. Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis.

    Directory of Open Access Journals (Sweden)

    Sylvain Aubry

    2014-06-01

    Full Text Available With at least 60 independent origins spanning monocotyledons and dicotyledons, the C4 photosynthetic pathway represents one of the most remarkable examples of convergent evolution. The recurrent evolution of this highly complex trait involving alterations to leaf anatomy, cell biology and biochemistry allows an increase in productivity by ∼ 50% in tropical and subtropical areas. The extent to which separate lineages of C4 plants use the same genetic networks to maintain C4 photosynthesis is unknown. We developed a new informatics framework to enable deep evolutionary comparison of gene expression in species lacking reference genomes. We exploited this to compare gene expression in species representing two independent C4 lineages (Cleome gynandra and Zea mays whose last common ancestor diverged ∼ 140 million years ago. We define a cohort of 3,335 genes that represent conserved components of leaf and photosynthetic development in these species. Furthermore, we show that genes encoding proteins of the C4 cycle are recruited into networks defined by photosynthesis-related genes. Despite the wide evolutionary separation and independent origins of the C4 phenotype, we report that these species use homologous transcription factors to both induce C4 photosynthesis and to maintain the cell specific gene expression required for the pathway to operate. We define a core molecular signature associated with leaf and photosynthetic maturation that is likely shared by angiosperm species derived from the last common ancestor of the monocotyledons and dicotyledons. We show that deep evolutionary comparisons of gene expression can reveal novel insight into the molecular convergence of highly complex phenotypes and that parallel evolution of trans-factors underpins the repeated appearance of C4 photosynthesis. Thus, exploitation of extant natural variation associated with complex traits can be used to identify regulators. Moreover, the transcription factors

  16. Progress of cereal transformation technology mediated by Agrobacterium tumefaciens.

    Science.gov (United States)

    Hiei, Yukoh; Ishida, Yuji; Komari, Toshihiko

    2014-01-01

    Monocotyledonous plants were believed to be not transformable by the soil bacterium Agrobacterium tumefaciens until two decades ago, although convenient protocols for infection of leaf disks and subsequent regeneration of transgenic plants had been well established in a number of dicotyledonous species by then. This belief was reinforced by the fact that monocotyledons are mostly outside the host range of crown gall disease caused by the bacterium and by the failures in trials in monocotyledons to mimic the transformation protocols for dicotyledons. However, a key reason for the failure could have been the lack of active cell divisions at the wound sites in monocotyledons. The complexity and narrow optimal windows of critical factors, such as genotypes of plants, conditions of the plants from which explants are prepared, tissue culture methods and culture media, pre-treatments of explants, strains of A. tumefaciens, inducers of virulence genes, transformation vectors, selection marker genes and selective agents, kept technical hurdles high. Eventually it was demonstrated that rice and maize could be transformed by co-cultivating cells of callus cultures or immature embryos, which are actively dividing or about to divide, with A. tumefaciens. Subsequently, these initial difficulties were resolved one by one by many research groups, and the major cereals are now transformed quite efficiently. As many as 15 independent transgenic events may be regenerated from a single piece of immature embryo of rice. Maize transformation protocols are well established, and almost all transgenic events deregulated for commercialization after 2003 were generated by Agrobacterium-mediated transformation. Wheat, barley, and sorghum are also among those plants that can be efficiently transformed by A. tumefaciens.

  17. Progress of cereal transformation technology mediated by Agrobacterium tumefaciens

    Science.gov (United States)

    Hiei, Yukoh; Ishida, Yuji; Komari, Toshihiko

    2014-01-01

    Monocotyledonous plants were believed to be not transformable by the soil bacterium Agrobacterium tumefaciens until two decades ago, although convenient protocols for infection of leaf disks and subsequent regeneration of transgenic plants had been well established in a number of dicotyledonous species by then. This belief was reinforced by the fact that monocotyledons are mostly outside the host range of crown gall disease caused by the bacterium and by the failures in trials in monocotyledons to mimic the transformation protocols for dicotyledons. However, a key reason for the failure could have been the lack of active cell divisions at the wound sites in monocotyledons. The complexity and narrow optimal windows of critical factors, such as genotypes of plants, conditions of the plants from which explants are prepared, tissue culture methods and culture media, pre-treatments of explants, strains of A. tumefaciens, inducers of virulence genes, transformation vectors, selection marker genes and selective agents, kept technical hurdles high. Eventually it was demonstrated that rice and maize could be transformed by co-cultivating cells of callus cultures or immature embryos, which are actively dividing or about to divide, with A. tumefaciens. Subsequently, these initial difficulties were resolved one by one by many research groups, and the major cereals are now transformed quite efficiently. As many as 15 independent transgenic events may be regenerated from a single piece of immature embryo of rice. Maize transformation protocols are well established, and almost all transgenic events deregulated for commercialization after 2003 were generated by Agrobacterium-mediated transformation. Wheat, barley, and sorghum are also among those plants that can be efficiently transformed by A. tumefaciens. PMID:25426132

  18. Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis.

    Science.gov (United States)

    Aubry, Sylvain; Kelly, Steven; Kümpers, Britta M C; Smith-Unna, Richard D; Hibberd, Julian M

    2014-06-01

    With at least 60 independent origins spanning monocotyledons and dicotyledons, the C4 photosynthetic pathway represents one of the most remarkable examples of convergent evolution. The recurrent evolution of this highly complex trait involving alterations to leaf anatomy, cell biology and biochemistry allows an increase in productivity by ∼ 50% in tropical and subtropical areas. The extent to which separate lineages of C4 plants use the same genetic networks to maintain C4 photosynthesis is unknown. We developed a new informatics framework to enable deep evolutionary comparison of gene expression in species lacking reference genomes. We exploited this to compare gene expression in species representing two independent C4 lineages (Cleome gynandra and Zea mays) whose last common ancestor diverged ∼ 140 million years ago. We define a cohort of 3,335 genes that represent conserved components of leaf and photosynthetic development in these species. Furthermore, we show that genes encoding proteins of the C4 cycle are recruited into networks defined by photosynthesis-related genes. Despite the wide evolutionary separation and independent origins of the C4 phenotype, we report that these species use homologous transcription factors to both induce C4 photosynthesis and to maintain the cell specific gene expression required for the pathway to operate. We define a core molecular signature associated with leaf and photosynthetic maturation that is likely shared by angiosperm species derived from the last common ancestor of the monocotyledons and dicotyledons. We show that deep evolutionary comparisons of gene expression can reveal novel insight into the molecular convergence of highly complex phenotypes and that parallel evolution of trans-factors underpins the repeated appearance of C4 photosynthesis. Thus, exploitation of extant natural variation associated with complex traits can be used to identify regulators. Moreover, the transcription factors that are shared by

  19. Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum.

    Science.gov (United States)

    Kolukisaoglu, H U; Marx, S; Wiegmann, C; Hanelt, S; Schneider-Poetsch, H A

    1995-09-01

    Thirty-two partial phytochrome sequences from algae, mosses, ferns, gymnosperms, and angiosperms (11 of them newly released ones from our laboratory) were analyzed by distance and character-state approaches (PHYLIP, TREECON, PAUP). In addition, 12 full-length sequences were analyzed. Despite low bootstrap values at individual internal nodes, the inferred trees (neighbor-joining, Fitch, maximum parsimony) generally showed similar branching orders consistent with other molecular data. Lower plants formed two distinct groups. One basal group consisted of Selaginella, Equisetum, and mosses; the other consisted of a monophyletic cluster of frond-bearing pteridophytes. Psilotum was a member of the latter group and hence perhaps was not, as sometimes suggested, a close relative of the first vascular plants. The results further suggest that phytochrome gene duplication giving rise to a- and b- and later to c-types may have taken place within seedfern genomes. Distance matrices dated the separation of mono- and dicotyledons back to about 260 million years before the present (Myr B.P.) and the separation of Metasequoia and Picea to a fossil record-compatible value of 230 Myr B.P. The Ephedra sequence clustered with the c- or a-type and Metasequoia and Picea sequences clustered with the b-type lineage. The "paleoherb" Nymphaea branched off from the c-type lineage prior to the divergence of mono- and dicotyledons on the a- and b-type branches. Sequences of Piper (another "paleoherb") created problems in that they branched off from different phytochrome lineages at nodes contradicting distance from the inferred trees' origin.

  20. Miocene fossil plants from Bukpyeong Formation of Bukpyeong Basin in Donghae City, Gangwon-do Province, Korea and their palaeoenvironmental implications

    Science.gov (United States)

    Jeong, Eun Kyoung; Kim, Hyun Joo; Uemura, Kazuhiko; Kim, Kyungsik

    2016-04-01

    The Tertiary sedimentary basins are distributed along the eastern coast of Korean Peninsula. The northernmost Bukpyeong Basin is located in Donghae City, Gangwon-do Province, Korea. The Bukpyeong Basin consists of Bukpyeong Formation and Dogyeongri Conglomerate in ascending order. The geologic age of Bukpyeong Formation has been suggested as from Early Miocene to Pliocene, In particular, Lee & Jacobs (2010) suggested the age of the Bukpyeong Formation as late Early Miocene to early Middle Miocene based on the fossils of rodent teeth. Sedimentary environment has been thought as mainly fresh water lake and/or swamp partly influenced by marine water. Lately, new outcrops of Bukpyeong Formation were exposed during the road construction and abundant fossil plants were yielded from the newly exposed outcrops. As a result of palaeobotanical studies 47 genera of 23 families have been found. This fossil plant assemblage is composed of gymnosperms and dicotyledons. Gymnosperms were Pinaceae (e.g., Pinus, Tsuga), Sciadopityaceae (e.g., Sciadopitys) and Cupressaceae with well-preserved Metasequoia cones. Dicotyledons were deciduous trees such as Betulaceae (e.g., Alnus, Carpinus) and Sapindaceae (e.g., Acer, Aesculus, Sapindus), and evergreen trees such as evergreen Fagaceae (e.g., Castanopsis, Cyclobalanopsis, Pasania) and Lauraceae (e.g., Cinnamomum, Machilus). In addition, fresh water plants such as Hemitrapa (Lytraceae) and Ceratophyllum (Ceratophyllaceae) were also found. The fossil plant assemblage of the Bukpyeong Formation supported the freshwater environment implied by previous studies. It can be suggested that the palaeoflora of Bukpyeong Formation was oak-laurel forest with broad-leaved evergreen and deciduous trees accompanying commonly by conifers of Pinaceae and Cupressaceae under warm-temperate climate.

  1. Application of biotests for the determination of soil ecotoxicity after exposure to biodegradable plastics

    Directory of Open Access Journals (Sweden)

    Susanna Sforzini

    2016-10-01

    Full Text Available Biodegradable plastics are mostly applied in packaging materials (e.g. shopping bags, waste collection bags, catering products, and agricultural applications. In this last case, degradation takes place directly in soil where biodegradable plastic products are intentionally left after use (e.g. mulch films for weeds control. Due to the growing volumes of biodegradable polymers and plastics, interest in their environmental safety is increasing and more research is carried out. Some attempt has been made to apply biotests, used in other sectors of environmental sciences, in the assessment of biodegradable plastics safety. In this work, the quality of soils after biodegradation of the bioplastics Mater-Bi has been assessed with a large array of biotests based on model organisms representative of the different trophic levels in the food chains of the edaphic and aquatic ecosystems. Mater-Bi was degraded under controlled conditions for 6 months at a 1% concentration. The selected organisms included bacteria and protozoa (V. fischeri and D. discoideum, respectively, the green alga P. subcapitata, plants (the monocotyledon S. saccharatum and the dicotyledon L. sativum, and invertebrates animals (D. magna, a freshwater crustacean, and the Oligochaeta earthworm E. andrei, using both acute and chronic endpoints. The results of the applied ecotoxicological tests showed that the Mater-Bi materials tested at very high doses did not affect the soil quality. Soil exposed to Mater-Bi has no noxious effects on edaphic organisms; in particular, mono and dicotyledon plants results, indicate that Mater-Bi plastic products are innocuous for agricultural uses. The use of more sensitive chronic endpoints allows to exclude possible effects at population level. This is the first time that such a comprehensive approach is applied to the assessment of possible ecotoxicity effects induced by biodegradable plastics in soil and represents a possible starting point for

  2. Identification of Important Physiological Traits and Moderators That Are Associated with Improved Salt Tolerance in CBL and CIPK Overexpressors through a Meta-Analysis

    Directory of Open Access Journals (Sweden)

    Yuanchun Ma

    2017-05-01

    Full Text Available The CBL-CIPK pathway is a plant-specific Ca2+ sensor relaying pathway that has been shown to be involved in plant response to salt stress. Over-expression of CBL-CIPK network genes has been reported to increase salt tolerance in many studies. The studies on the overexpression of CBL-CIPK network genes, however, have used various indices to evaluate the effect of these genes on salt tolerance and have indicated a variety of roles for the major CBL-CIPK pathway genes. Therefore, it is of great interest to analyze the various effects resulting from the overexpression CBL-CIPK pathway genes and their relation to salt tolerance. The meta-analysis conducted in the present study investigated how over-expression of CBLs or CIPKs in transgenic plants affects the response to salt stress and identified the increase or decrease that occurs in these experimental variables when foreign CIPK or CBL genes are overexpressed in transgenic plants. The data from the collective studies on over-expression of CIPKs indicated that 6 of the 11 examined parameters (main effects increased by 22% or more, while two of the six examined parameters increased by at least 78% in transgenic plants overexpressing CBL genes. In addition to analyzing the impact of overexpression on the main effects, eight different modifying parameters were also analyzed. Results indicated that several moderators impact the extent to which overexpression of CBLs and CIPKs affect the main parameters. The majority of CBLs have been obtained from dicotyledonous plants and most of the CBLs and CIPKs have been expressed in dicotyledonous plants. In comparison to homologous expression, the meta-analysis indicated that heterogeneous expression of CBLs resulted in greater increases in seed germination. The results of the meta-analysis provide information that could be useful in designing research to examine the mechanisms by which CBL-CIPK pathway genes increase salt tolerance in plants.

  3. Extensin network formation in Vitis vinifera callus cells is an essential and causal event in rapid and H2O2-induced reduction in primary cell wall hydration

    Science.gov (United States)

    2011-01-01

    Background Extensin deposition is considered important for the correct assembly and biophysical properties of primary cell walls, with consequences to plant resistance to pathogens, tissue morphology, cell adhesion and extension growth. However, evidence for a direct and causal role for the extensin network formation in changes to cell wall properties has been lacking. Results Hydrogen peroxide treatment of grapevine (Vitis vinifera cv. Touriga) callus cell walls was seen to induce a marked reduction in their hydration and thickness. An analysis of matrix proteins demonstrated this occurs with the insolubilisation of an abundant protein, GvP1, which displays a primary structure and post-translational modifications typical of dicotyledon extensins. The hydration of callus cell walls free from saline-soluble proteins did not change in response to H2O2, but fully regained this capacity after addition of extensin-rich saline extracts. To assay the specific contribution of GvP1 cross-linking and other wall matrix proteins to the reduction in hydration, GvP1 levels in cell walls were manipulated in vitro by binding selected fractions of extracellular proteins and their effect on wall hydration during H2O2 incubation assayed. Conclusions This approach allowed us to conclude that a peroxidase-mediated formation of a covalently linked network of GvP1 is essential and causal in the reduction of grapevine callus wall hydration in response to H2O2. Importantly, this approach also indicated that extensin network effects on hydration was only partially irreversible and remained sensitive to changes in matrix charge. We discuss this mechanism and the importance of these changes to primary wall properties in the light of extensin distribution in dicotyledons. PMID:21672244

  4. ST proteins, a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae.

    Science.gov (United States)

    Albornos, Lucía; Martín, Ignacio; Iglesias, Rebeca; Jiménez, Teresa; Labrador, Emilia; Dopico, Berta

    2012-11-07

    Many proteins with tandem repeats in their sequence have been described and classified according to the length of the repeats: I) Repeats of short oligopeptides (from 2 to 20 amino acids), including structural cell wall proteins and arabinogalactan proteins. II) Repeats that range in length from 20 to 40 residues, including proteins with a well-established three-dimensional structure often involved in mediating protein-protein interactions. (III) Longer repeats in the order of 100 amino acids that constitute structurally and functionally independent units. Here we analyse ShooT specific (ST) proteins, a family of proteins with tandem repeats of unknown function that were first found in Leguminosae, and their possible similarities to other proteins with tandem repeats. ST protein sequences were only found in dicotyledonous plants, limited to several plant families, mainly the Fabaceae and the Asteraceae. ST mRNAs accumulate mainly in the roots and under biotic interactions. Most ST proteins have one or several Domain(s) of Unknown Function 2775 (DUF2775). All deduced ST proteins have a signal peptide, indicating that these proteins enter the secretory pathway, and the mature proteins have tandem repeat oligopeptides that share a hexapeptide (E/D)FEPRP followed by 4 partially conserved amino acids, which could determine a putative N-glycosylation signal, and a fully conserved tyrosine. In a phylogenetic tree, the sequences clade according to taxonomic group. A possible involvement in symbiosis and abiotic stress as well as in plant cell elongation is suggested, although different STs could play different roles in plant development. We describe a new family of proteins called ST whose presence is limited to the plant kingdom, specifically to a few families of dicotyledonous plants. They present 20 to 40 amino acid tandem repeat sequences with different characteristics (signal peptide, DUF2775 domain, conservative repeat regions) from the described group of 20 to 40

  5. Tolerance of cultivated and wild plants of different taxonomy to soil contamination by kerosene.

    Science.gov (United States)

    Sharonova, Natalia; Breus, Irina

    2012-05-01

    In laboratory experiments on leached chernozem contaminated by kerosene (1-15 wt.%), germination of 50 plants from 21 families (cultivated and wild, annual and perennial, mono- and dicotyledonous) as affected by kerosene type and concentration and plant features was determined. Tested plants formed three groups: more tolerant, less tolerant, and intolerant, in which relative germination was more than 70%, 30-70% and less than 30%, respectively. As parameters of soil phytotoxicity, effective kerosene concentrations (EC) causing germination depression of 10%, 25% and 50% were determined. EC values depended on the plant species and varied in a wide range of kerosene concentrations: 0.02-7.3% (EC(10)), 0.05-8.1% (EC(25)), and 0.2-12.7% (EC(50)). The reported data on germination in soils contaminated by oil and petrochemicals were generalized. The comparison showed that at very high contamination levels (10 and 15%) kerosene was 1.3-1.6 times more phytotoxic than diesel fuel and 1.3-1.4 times more toxic than crude oil, and at low (1 and 2%) and medium (3 and 5%) levels the toxicity of these contaminants was close differing by a factor of 1.1-1.2. Tolerance of plants to soil contamination had a species-specific nature and, on the average, decreased in the following range of families: Fabaceae (germination decrease of 10-60% as compared to an uncontaminated control)>Brassicaceae (5-70%)>Asteraceae (25-95%)>Poaceae (10-100%). The monocotyledonous species tested were characterized as medium- and low-stable to contamination, whereas representatives of dicotyledonous plants were met in all groups of tolerance. Tested wild plants, contrary to reference data on oil toxicity, were more sensitive to kerosene than cultivated. No correlation was observed between degree of plant tolerance to kerosene and mass of seeds. The evidence indicates factors as structure and properties of testa, structure of germ, type of storage compounds, and type of seed germination (underground or

  6. Shadows of the colonial past--diverging plant use in Northern Peru and Southern Ecuador.

    Science.gov (United States)

    Bussmann, Rainer W; Sharon, Douglas

    2009-02-02

    This paper examines the traditional use of medicinal plants in Northern Peru and Southern Ecuador, with special focus on the Departments of Piura, Lambayeque, La Libertad, Cajamarca, and San Martin, and in Loja province, with special focus on the development since the early colonial period. Northern Peru represents the locus of the old Central Andean "Health Axis." The roots of traditional healing practices in this region go as far back as the Cupisnique culture early in the first millennium BC. Northern Peru and Southern Ecuador share the same cultural context and flora but show striking differences in plant use and traditional knowledge. Two hundred fifteen plant species used for medicinal purposes in Ecuador and 510 plant species used for medicinal purposes in Peru were collected, identified,. and their vernacular names, traditional uses, and applications recorded. This number of species indicates that the healers, market vendors, and members of the public interviewed in Peru still have a very high knowledge of plants in their surroundings, which can be seen as a reflection of the knowledge of the population in general. In Ecuador much of the original plant knowledge has already been lost. In Peru, 433 (85%) were Dicotyledons, 46 (9%) Monocotyledons, 21 (4%) Pteridophytes, and 5 (1%) Gymnosperms. Three species of Giartina (Algae) and one species of the Lichen genus Siphula were used. The families best represented were Asteraceae with 69 species, Fabaceae (35), Lamiaceae (25), and Solanaceae (21). Euphorbiaceae had 12 species, and Poaceae and Apiaceae each accounted for 11 species. In Ecuador the families best represented were Asteraceae (32 species), Euphorbiaceae, Lamiaceae, and Solanaceae (11 species each), and Apiaceae, Fabaceae, Lycopodiaceae (9 species each). One hundred eighty-two (85%) of the species used were Dicotyledons, 20 Monocotyledons (9.3%), 12 ferns (5.5%), and one unidentified lichen was used. Most of the plants used (83%) were native to Peru

  7. When plant virology met Agrobacterium: the rise of the deconstructed clones.

    Science.gov (United States)

    Peyret, Hadrien; Lomonossoff, George P

    2015-10-01

    In the early days of molecular farming, Agrobacterium-mediated stable genetic transformation and the use of plant virus-based vectors were considered separate and competing technologies with complementary strengths and weaknesses. The demonstration that 'agroinfection' was the most efficient way of delivering virus-based vectors to their target plants blurred the distinction between the two technologies and permitted the development of 'deconstructed' vectors based on a number of plant viruses. The tobamoviruses, potexviruses, tobraviruses, geminiviruses and comoviruses have all been shown to be particularly well suited to the development of such vectors in dicotyledonous plants, while the development of equivalent vectors for use in monocotyledonous plants has lagged behind. Deconstructed viral vectors have proved extremely effective at the rapid, high-level production of a number of pharmaceutical proteins, some of which are currently undergoing clinical evaluation. © 2015 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

  8. [Methods for the detection of Agrobacterium from plant, soil and water samples].

    Science.gov (United States)

    Alippi, Adriana M; López, Ana C; Balatti, Pedro A

    2011-01-01

    The genus Agrobacterium includes phytopathogenic bacteria that induce the development of root crown galls and/or aerial galls at the base of the stem or hairy roots on more than 600 species of plants belonging to 90 dicotyledonous families and non-pathogenic species. These bacteria being natural soil inhabitants are particularly difficult to eradicate, which is a problem in nurseries where more than 80% of infections occur. Since early detection is crucial to avoid the inadvertent spread of the disease, the aim of this work was to develop sensitive and precise identification techniques by using a set of semi-selective and differential culture media in combination with a specific PCR to amplify a partial sequence derived from the virC operon, as well as a multiplex PCR on the basis of 23SrDNA sequences, and biological assays to identify and differentiate species and biovars of Agrobacterium obtained either from soil, water or plant samples. The combination of the different assays allowed us to reduce the number of false positive and negative results from bacteria isolated from any of the three types of samples. Therefore, the combination of multiplex PCR, specific PCR, isolations in semi-selective D1, D1-M and YEM-RCT media combined with bioassays on cut leaves of Kalanchoe and seedlings of California Wonder pepper cultivar constitute an accurate tool to detect species and biovars of Agrobacterium for diagnostic purposes.

  9. Agrobacterium May Delay Plant Nonhomologous End-Joining DNA Repair via XRCC4 to Favor T-DNA Integration[W

    Science.gov (United States)

    Vaghchhipawala, Zarir E.; Vasudevan, Balaji; Lee, Seonghee; Morsy, Mustafa R.; Mysore, Kirankumar S.

    2012-01-01

    Agrobacterium tumefaciens is a soilborne pathogen that causes crown gall disease in many dicotyledonous plants by transfer of a portion of its tumor-inducing plasmid (T-DNA) into the plant genome. Several plant factors that play a role in Agrobacterium attachment to plant cells and transport of T-DNA to the nucleus have been identified, but the T-DNA integration step during transformation is poorly understood and has been proposed to occur via nonhomologous end-joining (NHEJ)–mediated double-strand DNA break (DSB) repair. Here, we report a negative role of X-RAY CROSS COMPLEMENTATION GROUP4 (XRCC4), one of the key proteins required for NHEJ, in Agrobacterium T-DNA integration. Downregulation of XRCC4 in Arabidopsis and Nicotiana benthamiana increased stable transformation due to increased T-DNA integration. Overexpression of XRCC4 in Arabidopsis decreased stable transformation due to decreased T-DNA integration. Interestingly, XRCC4 directly interacted with Agrobacterium protein VirE2 in a yeast two-hybrid system and in planta. VirE2-expressing Arabidopsis plants were more susceptible to the DNA damaging chemical bleomycin and showed increased stable transformation. We hypothesize that VirE2 titrates or excludes active XRCC4 protein available for DSB repair, thus delaying the closure of DSBs in the chromosome, providing greater opportunity for T-DNA to integrate. PMID:23064322

  10. Computational prediction of over-annotated protein-coding genes in the genome of Agrobacterium tumefaciens strain C58

    Science.gov (United States)

    Yu, Jia-Feng; Sui, Tian-Xiang; Wang, Hong-Mei; Wang, Chun-Ling; Jing, Li; Wang, Ji-Hua

    2015-12-01

    Agrobacterium tumefaciens strain C58 is a type of pathogen that can cause tumors in some dicotyledonous plants. Ever since the genome of A. tumefaciens strain C58 was sequenced, the quality of annotation of its protein-coding genes has been queried continually, because the annotation varies greatly among different databases. In this paper, the questionable hypothetical genes were re-predicted by integrating the TN curve and Z curve methods. As a result, 30 genes originally annotated as “hypothetical” were discriminated as being non-coding sequences. By testing the re-prediction program 10 times on data sets composed of the function-known genes, the mean accuracy of 99.99% and mean Matthews correlation coefficient value of 0.9999 were obtained. Further sequence analysis and COG analysis showed that the re-annotation results were very reliable. This work can provide an efficient tool and data resources for future studies of A. tumefaciens strain C58. Project supported by the National Natural Science Foundation of China (Grant Nos. 61302186 and 61271378) and the Funding from the State Key Laboratory of Bioelectronics of Southeast University.

  11. Nitric Oxide (NO) Measurements in Stomatal Guard Cells.

    Science.gov (United States)

    Agurla, Srinivas; Gayatri, Gunja; Raghavendra, Agepati S

    2016-01-01

    The quantitative measurement of nitric oxide (NO) in plant cells acquired great importance, in view of the multifaceted function and involvement of NO as a signal in various plant processes. Monitoring of NO in guard cells is quite simple because of the large size of guard cells and ease of observing the detached epidermis under microscope. Stomatal guard cells therefore provide an excellent model system to study the components of signal transduction. The levels and functions of NO in relation to stomatal closure can be monitored, with the help of an inverted fluorescence or confocal microscope. We can measure the NO in guard cells by using flouroprobes like 4,5-diamino fluorescein diacetate (DAF-2DA). This fluorescent dye, DAF-2DA, is cell permeable and after entry into the cell, the diacetate group is removed by the cellular esterases. The resulting DAF-2 form is membrane impermeable and reacts with NO to generate the highly fluorescent triazole (DAF-2T), with excitation and emission wavelengths of 488 and 530 nm, respectively. If time-course measurements are needed, the epidermis can be adhered to a cover-glass or glass slide and left in a small petri dishes. Fluorescence can then be monitored at required time intervals; with a precaution that excitation is done minimally, only when a fluorescent image is acquired. The present method description is for the epidermis of Arabidopsis thaliana and Pisum sativum and should work with most of the other dicotyledonous plants.

  12. Floristic diversity in bashemsin valley of kackar mountains national park of rize, turkey

    International Nuclear Information System (INIS)

    Baykal, H.

    2016-01-01

    The floristical structure of Bashemsin and its environs as a protected and isolated area within Kackar Mountains National Park, situated in Rize, a province in the Blacksea region of Turkey, is studied. 1830 plant specimens were collected and 503 taxa were identified in 234 genera and 75 families. Sixteen Pteridophytes and 487 Spermatophytes were determined. Two of Spermatophytes are Gymnospermae while 485 of them are Angiospermae (98 Monocotyledones and 389 Dicotyledones). The richest families in taxa are Asteraceae, Poaceae, Brassicaceae, and Fabaceae (55 Asteraceae, 49 Poaceae, 28 Brassicaceae, and 27 Fabaceae). Phytogeographic elements are listed in order as: Euro-Siberian 247 (49.1%), Irano-Turanian 17 (3.4%), Mediterranean 6 (1.2%), multiregional-unknown phytogeographic root 233 (46.3%). Hemicryptophytes are the richest with 224 (44.5%) taxa and it is followed by cryptophytes 144 (28.6%), therophytes 53 (10.5%), chamaephytes 59 (11.7%), phanerophytes 19 (3.8%), vasicular parasites 2 (0.4%), nanophanerophytes/chamaephytes 1 (0.2%) and hydrophytes 1 (0.2%). 34 endemic taxa were determined (6.7%). 13 threatened taxa were detected in the research area and we determined that Sorbus caucasica Zinserl. var. yaltirikii Goksin population has fallen into CR endangered category with only 2 individuals in the study area. (author)

  13. Détermination de la cellulose, des hémicelluloses, de la lignine et des cendres dans diverses cultures lignocellulosiques dédiées à la production de bioéthanol de deuxième génération

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    Godin, B.

    2010-01-01

    Full Text Available Cellulose, hemicelluloses, lignin, and ash contents in various lignocellulosic crops for second generation bioethanol production. Various green energy crops are available for the production of renewable energy vectors such as second generation bioethanol. The efficiency of the energy recovery potential of these lignocellulosic crops depends on the crop husbandry, their content of main components (cellulose, hemicelluloses, lignin, ash and on the second generation bioethanol production process. The lignocellulosic crops investigated in this study are miscanthus (Miscanthus x giganteus J.M.Greef & Deuter ex Hodk. & Renvoize, switchgrass (Panicum virgatum L., fescue (Festuca arundinacea Schreb., fiber sorghum (Sorghum bicolor (L. Moench, fiber corn (Zea mays L., "cocksfoot-alfalfa" mixture (Dactylis glomerata L. – Medicago sativa L., comfrey (Symphytum officinale L., jerusalem artichoke (aerial part (Helianthus tuberosus L. and hemp (Cannabis sativa L.. The samples came from different energy crop trials and their content in cellulose, hemicelluloses and lignin was quantified using the Van Soest method. The ash content has also been quantified. The lignocellulosic crops with the best theoretical potential to produce second generation bioethanol based on their biochemical composition (with a yield of 100% for the hydrolysis and the fermentation of cellulose and hemicelluloses are in decreasing order miscanthus, switchgrass, fescue, fiber sorghum, fiber corn and hemp. On one hand, these crops are composed of high amounts of cellulose and hemicelluloses and, on the other hand, the lignin and ash concentration are low. A principal component analysis showed that commeniloïd monocotyledonous and dicotyledonous lignocellulosic crops formed two differentiated categories.

  14. Distribution of a Ty3/gypsy-like retroelement on the A and B-chromosomes of Cestrum strigilatum Ruiz & Pav. and Cestrum intermedium Sendtn. (Solanaceae

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    Jéferson Nunes Fregonezi

    2007-01-01

    Full Text Available Retroelements are a diversified fraction of eukaryotic genomes, with the Ty1/copia and Ty3/gypsy groups being very common in a large number of plant genomes. We isolated an internal segment of the Ty3/gypsy retroelement of Cestrum strigilatum (Solanaceae using PCR amplification with degenerate primers for a conserved region of reverse transcriptase. The isolated segment (pCs12 was sequenced and showed similarity with Ty3/gypsy retroelements of monocotyledons and dicotyledons. This segment was used as probe in chromosomes of C. strigilatum and Cestrum intermedium. Diffuse hybridization signals were observed along the chromosomes and more accentuated terminal signals in some chromosome pairs, always associated with nucleolus organizer regions (NORs. The physical relationship between the hybridization sites of pCs12 and pTa71 ribosomal probes was assessed after sequential fluorescence in situ hybridization (FISH. Hybridization signals were also detected in the B chromosomes of these species, indicating an entail among the chromosomes of A complement and B-chromosomes.

  15. Isolation and characterization of cDNA clones for carrot extensin and a proline-rich 33-kDa protein

    International Nuclear Information System (INIS)

    Chen, J.; Varner, J.E.

    1985-01-01

    Extensins are hydroxyproline-rich glycoproteins associated with most dicotyledonous plant cell walls. To isolate cDNA clones encoding extensin, the authors started by isolating poly(A) + RNA from carrot root tissue, and then translating the RNA in vitro, in the presence of tritiated leucine or proline. A 33-kDa peptide was identified in the translation products as a putative extensin precursor. From a cDNA library constructed with poly(A) + RNA from wounded carrots, one cDNA clone (pDC5) was identified that specifically hybridized to poly(A) + RNA encoding this 33-kDa peptide. They isolated three cDNA clones (pDC11, pDC12, and pDC16) from another cDNA library using pCD5 as a probe. DNA sequence data, RNA hybridization analysis, and hybrid released in vitro translation indicate that the cDNA clones pDC11 encodes extensin and that cDNA clones pDC12 and pDC16 encode the 33-kDa peptide, which as yet has an unknown identity and function. The assumption that the 33-kDa peptide was an extensin precursor was invalid. RNA hybridization analysis showed that RNA encoded by both clone types is accumulated upon wounding

  16. Utilizing virus-induced gene silencing for the functional characterization of maize genes during infection with the fungal pathogen Ustilago maydis.

    Science.gov (United States)

    van der Linde, Karina; Doehlemann, Gunther

    2013-01-01

    While in dicotyledonous plants virus-induced gene silencing (VIGS) is well established to study plant-pathogen interaction, in monocots only few examples of efficient VIGS have been reported so far. One of the available systems is based on the brome mosaic virus (BMV) which allows gene silencing in different cereals including barley (Hordeum vulgare), wheat (Triticum aestivum), and maize (Zea mays).Infection of maize plants by the corn smut fungus Ustilago maydis leads to the formation of large tumors on stem, leaves, and inflorescences. During this biotrophic interaction, plant defense responses are actively suppressed by the pathogen, and previous transcriptome analyses of infected maize plants showed comprehensive and stage-specific changes in host gene expression during disease progression.To identify maize genes that are functionally involved in the interaction with U. maydis, we adapted a VIGS system based on the Brome mosaic virus (BMV) to maize at conditions that allow successful U. maydis infection of BMV pre-infected maize plants. This setup enables quantification of VIGS and its impact on U. maydis infection using a quantitative real-time PCR (q(RT)-PCR)-based readout.

  17. Geminivirus vectors for high-level expression of foreign proteins in plant cells.

    Science.gov (United States)

    Mor, Tsafrir S; Moon, Yong-Sun; Palmer, Kenneth E; Mason, Hugh S

    2003-02-20

    Bean yellow dwarf virus (BeYDV) is a monopartite geminivirus that can infect dicotyledonous plants. We have developed a high-level expression system that utilizes elements of the replication machinery of this single-stranded DNA virus. The replication initiator protein (Rep) mediates release and replication of a replicon from a DNA construct ("LSL vector") that contains an expression cassette for a gene of interest flanked by cis-acting elements of the virus. We used tobacco NT1 cells and biolistic delivery of plasmid DNA for evaluation of replication and expression of reporter genes contained within an LSL vector. By codelivery of a GUS reporter-LSL vector and a Rep-supplying vector, we obtained up to 40-fold increase in expression levels compared to delivery of the reporter-LSL vectors alone. High-copy replication of the LSL vector was correlated with enhanced expression of GUS. Rep expression using a whole BeYDV clone, a cauliflower mosaic virus 35S promoter driving either genomic rep or an intron-deleted rep gene, or 35S-rep contained in the LSL vector all achieved efficient replication and enhancement of GUS expression. We anticipate that this system can be adapted for use in transgenic plants or plant cell cultures with appropriately regulated expression of Rep, with the potential to greatly increase yield of recombinant proteins. Copyright 2003 Wiley Periodicals, Inc. Biotechnol Bioeng 81: 430-437, 2003.

  18. Two shikimate dehydrogenases, VvSDH3 and VvSDH4, are involved in gallic acid biosynthesis in grapevine.

    Science.gov (United States)

    Bontpart, Thibaut; Marlin, Thérèse; Vialet, Sandrine; Guiraud, Jean-Luc; Pinasseau, Lucie; Meudec, Emmanuelle; Sommerer, Nicolas; Cheynier, Véronique; Terrier, Nancy

    2016-05-01

    In plants, the shikimate pathway provides aromatic amino acids that are used to generate numerous secondary metabolites, including phenolic compounds. In this pathway, shikimate dehydrogenases (SDH) 'classically' catalyse the reversible dehydrogenation of 3-dehydroshikimate to shikimate. The capacity of SDH to produce gallic acid from shikimate pathway metabolites has not been studied in depth. In grapevine berries, gallic acid mainly accumulates as galloylated flavan-3-ols. The four grapevine SDH proteins have been produced in Escherichia coli In vitro, VvSDH1 exhibited the highest 'classical' SDH activity. Two genes, VvSDH3 and VvSDH4, mainly expressed in immature berry tissues in which galloylated flavan-3-ols are accumulated, encoded enzymes with lower 'classical' activity but were able to produce gallic acid in vitro The over-expression of VvSDH3 in hairy-roots increased the content of aromatic amino acids and hydroxycinnamates, but had little or no effect on molecules more distant from the shikimate pathway (stilbenoids and flavan-3-ols). In parallel, the contents of gallic acid, β-glucogallin, and galloylated flavan-3-ols were increased, attesting to the influence of this gene on gallic acid metabolism. Phylogenetic analysis from dicotyledon SDHs opens the way for the examination of genes from other plants which accumulate gallic acid-based metabolites. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  19. Genomic Characterization for Parasitic Weeds of the Genus Striga by Sample Sequence Analysis

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    Matt C. Estep

    2012-03-01

    Full Text Available Generation of ∼2200 Sanger sequence reads or ∼10,000 454 reads for seven Lour. DNA samples (five species allowed identification of the highly repetitive DNA content in these genomes. The 14 most abundant repeats in these species were identified and partially assembled. Annotation indicated that they represent nine long terminal repeat (LTR retrotransposon families, three tandem satellite repeats, one long interspersed element (LINE retroelement, and one DNA transposon. All of these repeats are most closely related to repetitive elements in other closely related plants and are not products of horizontal transfer from their host species. These repeats were differentially abundant in each species, with the LTR retrotransposons and satellite repeats most responsible for variation in genome size. Each species had some repetitive elements that were more abundant and some less abundant than the other species examined, indicating that no single element or any unilateral growth or decrease trend in genome behavior was responsible for variation in genome size and composition. Genome sizes were determined by flow sorting, and the values of 615 Mb [ (L. Kuntze], 1330 Mb [ (Willd. Vatke], 1425 Mb [ (Delile Benth.] and 2460 Mb ( Benth. suggest a ploidy series, a prediction supported by repetitive DNA sequence analysis. Phylogenetic analysis using six chloroplast loci indicated the ancestral relationships of the five most agriculturally important species, with the unexpected result that the one parasite of dicotyledonous plants ( was found to be more closely related to some of the grass parasites than many of the grass parasites are to each other.

  20. Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis.

    Science.gov (United States)

    Ohyama, Kiyoshi; Suzuki, Masashi; Kikuchi, Jun; Saito, Kazuki; Muranaka, Toshiya

    2009-01-20

    The differences between the biosynthesis of sterols in higher plants and yeast/mammals are believed to originate at the cyclization step of oxidosqualene, which is cyclized to cycloartenol in higher plants and lanosterol in yeast/mammals. Recently, lanosterol synthase genes were identified from dicotyledonous plant species including Arabidopsis, suggesting that higher plants possess dual biosynthetic pathways to phytosterols via lanosterol, and through cycloartenol. To identify the biosynthetic pathway to phytosterol via lanosterol, and to reveal the contributions to phytosterol biosynthesis via each cycloartenol and lanosterol, we performed feeding experiments by using [6-(13)C(2)H(3)]mevalonate with Arabidopsis seedlings. Applying (13)C-{(1)H}{(2)H} nuclear magnetic resonance (NMR) techniques, the elucidation of deuterium on C-19 behavior of phytosterol provided evidence that small amounts of phytosterol were biosynthesized via lanosterol. The levels of phytosterol increased on overexpression of LAS1, and phytosterols derived from lanosterol were not observed in a LAS1-knockout plant. This is direct evidence to indicate that the biosynthetic pathway for phytosterol via lanosterol exists in plant cells. We designate the biosynthetic pathway to phytosterols via lanosterol "the lanosterol pathway." LAS1 expression is reported to be induced by the application of jasmonate and is thought to have evolved from an ancestral cycloartenol synthase to a triterpenoid synthase, such as beta-amyrin synthase and lupeol synthase. Considering this background, the lanosterol pathway may contribute to the biosynthesis of not only phytosterols, but also steroids as secondary metabolites.

  1. Líquenes folícolas de la Estación Biológica La Selva, Costa Rica: inventario, comunidades y comparación florística de tipos de vegetación

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    Robert Lücking

    1999-09-01

    Full Text Available A total of 280 foliicolous lichens and 12 lichenicolous fungi was found in an inventory made in the lowland rain forest at La Selva Biological Station, Costa Rica. The species composition reflects 50 % of the world's diversity of foliicolous lichens and is representative for neotropical lowland rain forests. The most common species are Gyalectidium filicinum, Sporopodium leprieurii, Tricharia vainioi, Porina epiphylla, Phyllophiale alba, Trichothelium epiphyllum, Mazosia phyllosema, Tricharia urceolata, and Arthonia leptosperma. Many species show distinct microsite preferences: (1 Characteristic of the shady understory, including Arthoniaceae, Opegraphaceae, Pilocarpaceae, and Trichotheliaceae; (2 characteristic of light gaps, including Gomphillaceae and Ectolechiaceae; (3 characteristic of the canopy, including Asterothyriaceae and Gomphillaceae. Only few species exhibit preferences towards certain leaf types, either dicotyledoneous or palm leaves. The microsite preferences agree with earlier established indices, except for a few species for which modified indices are proposed. Communities resulting from these preferences are illustrated by clustering of phorophytes and associations of foliicolous lichens. The three principal associations correspond to the shady understory, light gaps and the canopy, whereas two subassociations reflect subtle phorophyte preferences. Species diversity and composition are strongly affected by the degree of disturbance of vegetation types at La Selva. Diversity is highest in the primary forest and lowest in young successional stages. The foliicolous lichen flora of open, anthropogenic vegetation resembles that of light gaps or the canopy in the primary forest, while species characteristic of the forest understory disappear.

  2. Axial vessel widening in arborescent monocots.

    Science.gov (United States)

    Petit, Giai; DeClerck, Fabrice A J; Carrer, Marco; Anfodillo, Tommaso

    2014-02-01

    Dicotyledons have evolved a strategy to compensate for the increase in hydraulic resistance to water transport with height growth by widening xylem conduits downwards. In monocots, the accumulation of hydraulic resistance with height should be similar, but the absence of secondary growth represents a strong limitation for the maintenance of xylem hydraulic efficiency during ontogeny. The hydraulic architecture of monocots has been studied but it is unclear how monocots arrange their axial vascular structure during ontogeny to compensate for increases in height. We measured the vessel lumina and estimated the hydraulic diameter (Dh) at different heights along the stem of two arborescent monocots, Bactris gasipaes (Kunth) and Guadua angustifolia (Kunth). For the former, we also estimated the variation in Dh along the leaf rachis. Hydraulic diameter increased basally from the stem apex to the base with a scaling exponent (b) in the range of those reported for dicot trees (b = 0.22 in B. gasipaes; b = 0.31 and 0.23 in G. angustifolia). In B. gasipaes, vessels decrease in Dh from the stem's centre towards the periphery, an opposite pattern compared with dicot trees. Along the leaf rachis, a pattern of increasing Dh basally was also found (b = 0.13). The hydraulic design of the monocots studied revealed an axial pattern of xylem conduits similar to those evolved by dicots to compensate and minimize the negative effect of root-to-leaf length on hydrodynamic resistance to water flow.

  3. Molecular cloning and characterization of two β-ketoacyl-acyl carrier protein synthase I genes from Jatropha curcas L.

    Science.gov (United States)

    Xiong, Wangdan; Wei, Qian; Wu, Pingzhi; Zhang, Sheng; Li, Jun; Chen, Yaping; Li, Meiru; Jiang, Huawu; Wu, Guojiang

    2017-07-01

    The β-ketoacyl-acyl carrier protein synthase I (KASI) is involved in de novo fatty acid biosynthesis in many organisms. Two putative KASI genes, JcKASI-1 and JcKASI-2, were isolated from Jatropha curcas. The deduced amino acid sequences of JcKASI-1 and JcKASI-2 exhibit around 83.8% and 72.5% sequence identities with AtKASI, respectively, and both contain conserved Cys-His-Lys-His-Phe catalytic active sites. Phylogenetic analysis indicated that JcKASI-2 belongs to a clade with several KASI proteins from dicotyledonous plants. Both JcKASI genes were expressed in multiple tissues, most strongly in filling stage seeds of J. curcas. Additionally, the JcKASI-1 and JcKASI-2 proteins were both localized to the plastids. Expressing JcKASI-1 in the Arabidopsis kasI mutant rescued the mutant's phenotype and restored the fatty acid composition and oil content in seeds to wild-type, but expressing JcKASI-2 in the Arabidopsis kasI mutant resulted in only partial rescue. This implies that JcKASI-1 and JcKASI-2 exhibit partial functional redundancy and KASI genes play a universal role in regulating fatty acid biosynthesis, growth, and development in plants. Copyright © 2017 Elsevier GmbH. All rights reserved.

  4. An attack of the plant parasite Cuscuta reflexa induces the expression of attAGP, an attachment protein of the host tomato.

    Science.gov (United States)

    Albert, Markus; Belastegui-Macadam, Xana; Kaldenhoff, Ralf

    2006-11-01

    Dodder or Cuscutaceae are holoparasitic plants subsisting on other dicotyledonous plants. The infection process is initiated by adherence of Cuscuta prehaustoria to the host surface, followed by penetration attempts by hyphae. In the case of a successful infection, these organs connect the parasite's vascular tissue to that of the host. Here we show that contact of Cuscuta reflexa prehaustoria to tomato induces the expression of a new arabinogalactan protein (AGP), attAGP, in the tomato precisely at the site of dodder attack. We show that attAGP is a plasma membrane-bound cell wall-localized protein. Using the RNAi technique and attAGP-targeted virus-induced gene silencing, we observed a correlation between attAGP expression level and force of attachment of the parasite to host tomatoes. If the expression level of attAGP was reduced, the C. reflexa attachment capability was significantly reduced, too. We conclude that C. reflexa infection induced a signal in the host leading to expression of tomato attAGP, which promotes the parasite's adherence.

  5. Restricted cell elongation in Arabidopsis hypocotyls is associated with a reduced average pectin esterification level

    Directory of Open Access Journals (Sweden)

    Derbyshire Paul

    2007-06-01

    Full Text Available Abstract Background Cell elongation is mainly limited by the extensibility of the cell wall. Dicotyledonous primary (growing cell walls contain cellulose, xyloglucan, pectin and proteins, but little is known about how each polymer class contributes to the cell wall mechanical properties that control extensibility. Results We present evidence that the degree of pectin methyl-esterification (DE% limits cell growth, and that a minimum level of about 60% DE is required for normal cell elongation in Arabidopsis hypocotyls. When the average DE% falls below this level, as in two gibberellic acid (GA mutants ga1-3 and gai, and plants expressing pectin methyl-esterase (PME1 from Aspergillus aculeatus, then hypocotyl elongation is reduced. Conclusion Low average levels of pectin DE% are associated with reduced cell elongation, implicating PMEs, the enzymes that regulate DE%, in the cell elongation process and in responses to GA. At high average DE% other components of the cell wall limit GA-induced growth.

  6. Geminivirus data warehouse: a database enriched with machine learning approaches.

    Science.gov (United States)

    Silva, Jose Cleydson F; Carvalho, Thales F M; Basso, Marcos F; Deguchi, Michihito; Pereira, Welison A; Sobrinho, Roberto R; Vidigal, Pedro M P; Brustolini, Otávio J B; Silva, Fabyano F; Dal-Bianco, Maximiller; Fontes, Renildes L F; Santos, Anésia A; Zerbini, Francisco Murilo; Cerqueira, Fabio R; Fontes, Elizabeth P B

    2017-05-05

    The Geminiviridae family encompasses a group of single-stranded DNA viruses with twinned and quasi-isometric virions, which infect a wide range of dicotyledonous and monocotyledonous plants and are responsible for significant economic losses worldwide. Geminiviruses are divided into nine genera, according to their insect vector, host range, genome organization, and phylogeny reconstruction. Using rolling-circle amplification approaches along with high-throughput sequencing technologies, thousands of full-length geminivirus and satellite genome sequences were amplified and have become available in public databases. As a consequence, many important challenges have emerged, namely, how to classify, store, and analyze massive datasets as well as how to extract information or new knowledge. Data mining approaches, mainly supported by machine learning (ML) techniques, are a natural means for high-throughput data analysis in the context of genomics, transcriptomics, proteomics, and metabolomics. Here, we describe the development of a data warehouse enriched with ML approaches, designated geminivirus.org. We implemented search modules, bioinformatics tools, and ML methods to retrieve high precision information, demarcate species, and create classifiers for genera and open reading frames (ORFs) of geminivirus genomes. The use of data mining techniques such as ETL (Extract, Transform, Load) to feed our database, as well as algorithms based on machine learning for knowledge extraction, allowed us to obtain a database with quality data and suitable tools for bioinformatics analysis. The Geminivirus Data Warehouse (geminivirus.org) offers a simple and user-friendly environment for information retrieval and knowledge discovery related to geminiviruses.

  7. Unexpected complexity of the Aquaporin gene family in the moss Physcomitrella patens

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    Johanson Urban

    2008-04-01

    Full Text Available Abstract Background Aquaporins, also called major intrinsic proteins (MIPs, constitute an ancient superfamily of channel proteins that facilitate the transport of water and small solutes across cell membranes. MIPs are found in almost all living organisms and are particularly abundant in plants where they form a divergent group of proteins able to transport a wide selection of substrates. Results Analyses of the whole genome of Physcomitrella patens resulted in the identification of 23 MIPs, belonging to seven different subfamilies, of which only five have been previously described. Of the newly discovered subfamilies one was only identified in P. patens (Hybrid Intrinsic Protein, HIP whereas the other was found to be present in a wide variety of dicotyledonous plants and forms a major previously unrecognized MIP subfamily (X Intrinsic Proteins, XIPs. Surprisingly also some specific groups within subfamilies present in Arabidopsis thaliana and Zea mays could be identified in P. patens. Conclusion Our results suggest an early diversification of MIPs resulting in a large number of subfamilies already in primitive terrestrial plants. During the evolution of higher plants some of these subfamilies were subsequently lost while the remaining subfamilies expanded and in some cases diversified, resulting in the formation of more specialized groups within these subfamilies.

  8. How could sympatric megaherbivores coexist? Example of niche partitioning within a proboscidean community from the Miocene of Europe

    Science.gov (United States)

    Calandra, Ivan; Göhlich, Ursula B.; Merceron, Gildas

    2008-09-01

    Although low in diversity, megaherbivores (mammals weighting over 103 kg) and especially proboscideans have a powerful impact on the structure and dynamics of present-day ecosystems. During the Neogene (23 to 2.6 Ma) of Europe, the diversity and geographic distribution of these megaherbivores was much greater. Nonetheless, their role in past ecosystems is unclear. Nutrition is one of the main bonds between organisms and their environment. Therefore, the ecology of organisms can be inferred from their dietary habits. The present study is aimed at characterizing the feeding habits of diverse megaherbivores through dental microwear analyses. This method was applied on cheek teeth of three sympatric species of proboscideans from the middle/late Miocene of the Molasse Basin in Southern Germany: Gomphotherium subtapiroideum, Gomphotherium steinheimense, and Deinotherium giganteum. The microwear signatures are significantly different between these taxa, suggesting differences in feeding habits and ecological niches within a woodland environment. D. giganteum probably browsed on dicotyledonous foliages whereas the two species of gomphotheres were neither strict grazers nor strict browsers and instead probably fed on a large spectrum of vegetal resources. The differences of occlusal molar morphology between the two gomphotheres are supported by the dental microwear pattern. Indeed, G. subtapiroideum probably ingested more abrasive material than G. steinheimense. Thus, our results suggest that these proboscideans did not compete for food resources.

  9. Proposal of Xanthomonas translucens pv. pistaciae pv. nov., pathogenic to pistachio (Pistacia vera).

    Science.gov (United States)

    Giblot-Ducray, Danièle; Marefat, Alireza; Gillings, Michael R; Parkinson, Neil M; Bowman, John P; Ophel-Keller, Kathy; Taylor, Cathy; Facelli, Evelina; Scott, Eileen S

    2009-12-01

    Strains of Xanthomonas translucens have caused dieback in the Australian pistachio industry for the last 15 years. Such pathogenicity to a dicotyledonous woody host contrasts with that of other pathovars of X. translucens, which are characterized by their pathogenicity to monocotyledonous plant families. Further investigations, using DNA-DNA hybridization, gyrB gene sequencing and integron screening, were conducted to confirm the taxonomic status of the X. translucens pathogenic to pistachio. DNA-DNA hybridization provided a clear classification, at the species level, of the pistachio pathogen as a X. translucens. In the gyrB-based phylogeny, strains of the pistachio pathogen clustered among the X. translucens pathovars as two distinct lineages. Integron screening revealed that the cassette arrays of strains of the pistachio pathogen were different from those of other Xanthomonas species, and again distinguished two groups. Together with previously reported pathogenicity data, these results confirm that the pistachio pathogen is a new pathovar of X. translucens and allow hypotheses about its origin. The proposed name is Xanthomonas translucens pv. pistaciae pv. nov.

  10. Diet of the crayfish Paranephrops zealandicus in bush and pasture streams : insights from stable isotopes and stomach analysis

    International Nuclear Information System (INIS)

    Hollows, J.W.; Townsend, C.R.; Collier, K.J.

    2002-01-01

    Crayfish (Paranephrops zealandicus White) stomachs from streams in both native bush (mainly tree leaves and dicotyledonous seeds) and exotic pasture settings (mainly grass stems and monocotyledonous seeds) were dominated by allochthonous material. More detritus occurred in stomachs in autumn-winter than in spring-summer, but quantities were similar in crayfish from native bush and pasture streams. The stomachs of larger crayfish contained a significantly greater proportion of detritus than smaller individuals. Aquatic invertebrates were the second most abundant dietary category by volume, with highest values in winter, but there were no significant differences between land uses or crayfish size classes. A wide range of invertebrates was eaten by crayfish, with mayfly nymphs, chironomid larvae, and snails predominating. The latter were numerically more prominent in crayfish from bush than pasture streams. Terrestrial invertebrates were recorded from 4% of stomachs, but there were no significant differences in relation to land use, season, or crayfish size class. Despite aquatic invertebrates making up 13 C and perhaps of microfloral origin, seems to be an important energy source for crayfish in both stream types. (author). 52 refs., 5 figs., 2 tabs

  11. Pollen grains in quaternary sediments from the Campos Basin, state of Rio de Janeiro, Brazil: Core BU-91-GL-05

    Directory of Open Access Journals (Sweden)

    Aline Gonçalves de Freitas

    2013-12-01

    Full Text Available Here, we describe pollen grains extracted from a Pleistocene-Holocene sediment core (BU-91-GL-05; 22°48'45"S; 41°54'13"W taken from the Albacora Slope (22°48'45"S; 41°54'13"W, located in the Campos Basin of the northern region of the state of Rio de Janeiro, Brazil. The analysis resulted in the identification and morphological description of 46 types of pollen: one of a gymnosperm genus (Podocarpus; and 45 of angiosperm taxa across 27 families-one family of monocotyledons (Poaceae and 26 families (30 types of dicotyledons. The most common angiosperm families were Amaranthaceae (Chenopodium, Amaranthus and Gomphrena; Fabaceae (Fabaceae type, Bauhinia, Inga and Canavalia; Malpighiaceae (Tetrapteris, Heteropteris and Peixotoa; Malvaceae (Sida, Abutilon, Hibiscus and Pseudobombax; Rubiaceae (Faramea, Borreria and Psychotria; Asteraceae (Eupatorium and tribe Vernonieae; Bignoniaceae (Bignoniaceae type, Adenocalymma and Tabebuia; and Onagraceae (Fuchsia and Ludwigia. The palynoflora in this study are associated with dense montane and submontane Atlantic Forest, semideciduous forest and restinga (coastal woodland, all of which are present in the state of Rio de Janeiro. Palynological analysis can provide important data about paleovegetation and paleoclimatic changes in the studied area during the Quaternary, specifically in the last 145,000 years.

  12. Correlation of leaf damage with uptake and translocation of glyphosate in velvetleaf (Abutilon theophrasti)

    International Nuclear Information System (INIS)

    Feng, P.C.C.; Ryerse, J.S.; Sammons, R.D.

    1998-01-01

    Uptake and translocation of glyphosate in three commercial formulations were examined in velvetleaf, a dicotyledonous weed that is commonly treated with glyphosate. The formulations included Roundup(R) (MON35085), Roundup Ultra, and Touchdown(R) as sold in Canada. A minimal amount of 14C-glyphosate was spiked into a lethal rate of each formulation, and the short-term (3 to 72 h) uptake into the treated leaf and subsequent translocation into the plant were measured. Time-course studies showed very rapid uptake and translocation of glyphosate in the Ultra formulation. In comparison, the uptake and translocation of glyphosate in Touchdown was much slower but continued throughout the 72-h period. Glyphosate in the Roundup formulation showed intermediate uptake and translocation. Tissue necrosis at the application sites of Ultra and Roundup was visible within 24 h after treatment. Examinations using stereo and fluorescence microscopy revealed extensive cell death and tissue disruption. Tissue necrosis from Ultra and Roundup was also observed in blank formulations containing no glyphosate and therefore was likely caused by the surfactants. In contrast, the application sites of Touchdown produced little to no leaf damage. Our results demonstrated a direct correlation between tissue necrosis and rapid rates of glyphosate uptake and translocation. (author)

  13. Uptake, localization, and speciation of cobalt in Triticum aestivum L. (wheat) and Lycopersicon esculentum M. (tomato).

    Science.gov (United States)

    Collins, Richard N; Bakkaus, Estelle; Carrière, Marie; Khodja, Hicham; Proux, Olivier; Morel, Jean-Louis; Gouget, Barbara

    2010-04-15

    The root-to-shoot transfer, localization, and chemical speciation of Co were investigated in a monocotyledon (Triticum aestivum L., wheat) and a dicotyledon (Lycopersicon esculentum M., tomato) plant species grown in nutrient solution at low (5 muM) and high (20 muM) Co(II) concentrations. Cobalt was measured in the roots and shoots by inductively coupled plasma-mass spectrometry. X-ray absorption spectroscopy measurements were used to identify the chemical structure of Co within the plants and Co distribution in the leaves was determined by micro-PIXE (particle induced X-ray emission). Although the root-to-shoot transport was higher for tomato plants exposed to excess Co, both plants appeared as excluders. The oxidation state of Co(II) was not transformed by either plant in the roots or shoots and Co appeared to be present as Co(II) in a complex with carboxylate containing organic acids. Cobalt was also essentially located in the vascular system of both plant species indicating that neither responded to Co toxicity via sequestration in epidermal or trichome tissues as has been observed for other metals in metal hyperaccumulating plants.

  14. Driving factors of the communities of phytophagous and predatory mites in a physic nut plantation and spontaneous plants associated.

    Science.gov (United States)

    Cruz, Wilton P; Sarmento, Renato A; Teodoro, Adenir V; Neto, Marçal P; Ignacio, Maíra

    2013-08-01

    Seasonal changes in climate and plant diversity are known to affect the population dynamics of both pests and natural enemies within agroecosystems. In Brazil, spontaneous plants are usually tolerated in small-scale physic nut plantations over the year, which in turn may mediate interactions between pests and natural enemies within this agroecosystem. Here, we aimed to access the influence of seasonal variation of abiotic (temperature, relative humidity and rainfall) and biotic (diversity of spontaneous plants, overall richness and density of mites) factors on the communities of phytophagous and predatory mites found in a physic nut plantation and its associated spontaneous plants. Mite sampling was monthly conducted in dicotyledonous and monocotyledonous leaves of spontaneous plants as well as in physic nut shrubs over an entire year. In the dry season there was a higher abundance of phytophagous mites (Tenuipalpidae, Tarsonemidae and Tetranychidae) on spontaneous plants than on physic nut shrubs, while predatory mites (Phytoseiidae) showed the opposite pattern. The overall density of mites on spontaneous plants increased with relative humidity and diversity of spontaneous plants. Rainfall was the variable that most influenced the density of mites inhabiting physic nut shrubs. Agroecosystems comprising spontaneous plants associated with crops harbour a rich mite community including species of different trophic levels which potentially benefit natural pest control due to increased diversity and abundance of natural enemies.

  15. Biological Efficacy of Herbicides for Weed Control in Noncropped Areas

    Directory of Open Access Journals (Sweden)

    Tsvetanka Dimitrova

    2009-01-01

    Full Text Available An increasing problem facing agricultural producers is the invasion of weeds, perennial in particular, so that implementation of industrial technologies is impossible without their highly efficient and rational control. For the purpose of studying efficient herbicides for weed control in noncropped areas (stubbles, a biological study of five total systemic herbicides was conducted in areas under natural weed infestation and pressure from othersurrounding weeds at the Institute of Forage Crops in Pleven in 2005-2007. The trials were carried out in field conditions using the block method with plot size of 20 m². Treatment was conducted at the predominant stage of budding of perennial dicotyledonous weeds and earing of monocotyledonous weeds. Herbicidal efficacy was recorded on the EWRS 9-score scale (0-100% killed weeds = score 9-1. It was found that treatment of noncropped areas (stubbles with the total systemic herbicides Touchdown System 4 (360 g/l glyphosate; Cosmic (360 g/l glyphosate; Roundup Plus (441 g/l glyphosate potassium salt; Leon 36 SL (360 g/l glyphosate and Glyphos Super 45 SL (450 g/l glyphosate was highly efficient, so that it was a successful element of a strategy for controlling weeds of different biological groups, and was especially effective against perennial weeds.

  16. Identification and functional analysis of two alternatively spliced transcripts of ABSCISIC ACID INSENSITIVE3 (ABI3) in linseed flax (Linum usitatissimum L.).

    Science.gov (United States)

    Wang, Yanyan; Zhang, Tianbao; Song, Xiaxia; Zhang, Jianping; Dang, Zhanhai; Pei, Xinwu; Long, Yan

    2018-01-01

    Alternative splicing is a popular phenomenon in different types of plants. It can produce alternative spliced transcripts that encode proteins with altered functions. Previous studies have shown that one transcription factor, ABSCISIC ACID INSENSITIVE3 (ABI3), which encodes an important component in abscisic acid (ABA) signaling, is subjected to alternative splicing in both mono- and dicotyledons. In the current study, we identified two homologs of ABI3 in the genome of linseed flax. We screened two alternatively spliced flax LuABI3 transcripts, LuABI3-2 and LuABI3-3, and one normal flax LuABI3 transcript, LuABI3-1. Sequence analysis revealed that one of the alternatively spliced transcripts, LuABI3-3, retained a 6 bp intron. RNA accumulation analysis showed that all three transcripts were expressed during seed development, while subcellular localization and transgene experiments showed that LuABI3-3 had no biological function. The two normal transcripts, LuABI3-1 and LuABI3-2, are the important functional isoforms in flax and play significant roles in the ABA regulatory pathway during seed development, germination, and maturation.

  17. Isolation and characterisation of cDNA clones representing the genes encoding the major tuber storage protein (dioscorin) of yam (Dioscorea cayenensis Lam.).

    Science.gov (United States)

    Conlan, R S; Griffiths, L A; Napier, J A; Shewry, P R; Mantell, S; Ainsworth, C

    1995-06-01

    cDNA clones encoding dioscorins, the major tuber storage proteins (M(r) 32,000) of yam (Dioscorea cayenesis) have been isolated. Two classes of clone (A and B, based on hybrid release translation product sizes and nucleotide sequence differences) which are 84.1% similar in their protein coding regions, were identified. The protein encoded by the open reading frame of the class A cDNA insert is of M(r) 30,015. The difference in observed and calculated molecular mass might be attributed to glycosylation. Nucleotide sequencing and in vitro transcription/translation suggest that the class A dioscorin proteins are synthesised with signal peptides of 18 amino acid residues which are cleaved from the mature peptide. The class A and class B proteins are 69.6% similar with respect to each other, but show no sequence identity with other plant proteins or with the major tuber storage proteins of potato (patatin) or sweet potato (sporamin). Storage protein gene expression was restricted to developing tubers and was not induced by growth conditions known to induce expression of tuber storage protein genes in other plant species. The codon usage of the dioscorin genes suggests that the Dioscoreaceae are more closely related to dicotyledonous than to monocotyledonous plants.

  18. A large scale analysis of cDNA in Arabidopsis thaliana: generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries.

    Science.gov (United States)

    Asamizu, E; Nakamura, Y; Sato, S; Tabata, S

    2000-06-30

    For comprehensive analysis of genes expressed in the model dicotyledonous plant, Arabidopsis thaliana, expressed sequence tags (ESTs) were accumulated. Normalized and size-selected cDNA libraries were constructed from aboveground organs, flower buds, roots, green siliques and liquid-cultured seedlings, respectively, and a total of 14,026 5'-end ESTs and 39,207 3'-end ESTs were obtained. The 3'-end ESTs could be clustered into 12,028 non-redundant groups. Similarity search of the non-redundant ESTs against the public non-redundant protein database indicated that 4816 groups show similarity to genes of known function, 1864 to hypothetical genes, and the remaining 5348 are novel sequences. Gene coverage by the non-redundant ESTs was analyzed using the annotated genomic sequences of approximately 10 Mb on chromosomes 3 and 5. A total of 923 regions were hit by at least one EST, among which only 499 regions were hit by the ESTs deposited in the public database. The result indicates that the EST source generated in this project complements the EST data in the public database and facilitates new gene discovery.

  19. Temporal analysis of reassortment and molecular evolution of Cucumber mosaic virus: Extra clues from its segmented genome

    Energy Technology Data Exchange (ETDEWEB)

    Ohshima, Kazusato, E-mail: ohshimak@cc.saga-u.ac.jp [Laboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga (Japan); The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima (Japan); Matsumoto, Kosuke [Laboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga (Japan); Yasaka, Ryosuke [Laboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga (Japan); The United Graduate School of Agricultural Sciences, Kagoshima University, Kagoshima (Japan); Nishiyama, Mai; Soejima, Kenta [Laboratory of Plant Virology, Faculty of Agriculture, Saga University, Saga (Japan); Korkmaz, Savas [Department of Plant Protection, Faculty of Agriculture, University of Canakkale Onsekiz Mart, Canakkale (Turkey); Ho, Simon Y.W. [School of Biological Sciences, University of Sydney, Sydney, New South Wales (Australia); Gibbs, Adrian J. [Emeritus Faculty, Australian National University, Canberra (Australia); Takeshita, Minoru [Laboratory of Plant Pathology, Faculty of Agriculture, University of Miyazaki, Miyazaki (Japan)

    2016-01-15

    Cucumber mosaic virus (CMV) is a damaging pathogen of over 200 mono- and dicotyledonous crop species worldwide. It has the broadest known host range of any virus, but the timescale of its evolution is unknown. To investigate the evolutionary history of this virus, we obtained the genomic sequences of 40 CMV isolates from brassicas sampled in Iran, Turkey and Japan, and combined them with published sequences. Our synonymous ('silent') site analyses revealed that the present CMV population is the progeny of a single ancestor existing 1550–2600 years ago, but that the population mostly radiated 295–545 years ago. We found that the major CMV lineages are not phylogeographically confined, but that recombination and reassortment is restricted to local populations and that no reassortant lineage is more than 251 years old. Our results highlight the different evolutionary patterns seen among viral pathogens of brassica crops across the world. - Highlights: • Present-day CMV lineages had a most recent common ancestor 1550–2600 years ago. • The CMV population mostly radiated less than 295–545 years ago. • No reassortant found in the present populations is more than 251 years old. • The open-reading frames evolve at around 2.3–4.7×10{sup −4} substitutions/site/year. • Synonymous codons of CMV seem to have a more precise temporal signal than all codons.

  20. Mechanical properties: wood lumber versus plastic lumber and thermoplastic composites

    Directory of Open Access Journals (Sweden)

    Bernardo Zandomenico Dias

    Full Text Available Abstract Plastic lumber and thermoplastic composites are sold as alternatives to wood products. However, many technical standards and scientific studies state that the two materials cannot be considered to have the same structural behaviour and strength. Moreover, there are many compositions of thermoplastic-based products and plenty of wood species. How different are their mechanical properties? This study compares the modulus of elasticity and the flexural, compressive, tensile and shear strengths of such materials, as well as the materials' specific mechanical properties. It analyses the properties of wood from the coniferae and dicotyledon species and those of commercialized and experimental thermoplastic-based product formulations. The data were collected from books, scientific papers and manufacturers' websites and technical data sheets, and subsequently compiled and presented in Ashby plots and bar graphs. The high values of the compressive strength and specific compressive and tensile strengths perpendicular to the grain (width direction shown by the experimental thermoplastic composites compared to wood reveal their great potential for use in compressed elements and in functions where components are compressed or tensioned perpendicularly to the grain. However, the low specific flexural modulus and high density of thermoplastic materials limit their usage in certain civil engineering and building applications.

  1. Temporal aspects of copper homeostasis and its crosstalk with hormones

    Directory of Open Access Journals (Sweden)

    Lola ePeñarrubia

    2015-04-01

    Full Text Available To cope with the dual nature of copper as being essential and toxic for cells, plants temporarily adapt the expression of copper homeostasis components to assure its delivery to cuproproteins while avoiding the interference of potential oxidative damage derived from both copper uptake and photosynthetic reactions during light hours. The circadian clock participates in the temporal organization of coordination of plant nutrition adapting metabolic responses to the daily oscillations. This timely control improves plant fitness and reproduction and holds biotechnological potential to drive increased crop yields. Hormonal pathways, including those of abscisic acid, gibberellins, ethylene, auxins, and jasmonates are also under direct clock and light control, both in mono and dicotyledons. In this review, we focus on copper transport in Arabidopsis thaliana and Oryza sativa and the presumable role of hormones in metal homeostasis matching nutrient availability to growth requirements and preventing metal toxicity. The presence of putative hormone-dependent regulatory elements in the promoters of copper transporters genes suggests hormonal regulation to match special copper requirements during plant development. Spatial and temporal processes that can be affected by hormones include the regulation of copper uptake into roots, intracellular trafficking and compartmentalisation, and long-distance transport to developing vegetative and reproductive tissues. In turn, hormone biosynthesis and signalling are also influenced by copper availability, which suggests reciprocal regulation subjected to temporal control by the central oscillator of the circadian clock. This transcriptional regulatory network, coordinates environmental and hormonal signalling with developmental pathways to allow enhanced micronutrient acquisition efficiency.

  2. A study of the flora of aquatic habitats in East and West of Mazandaran province, Iran

    Directory of Open Access Journals (Sweden)

    Samaneh Tavakoli

    2013-09-01

    Full Text Available To judge and to evaluate the ecological characteristics of a region, vegetation is of prime importance. In fact, it reflects the biological reactions against the environmental conditions, plant evolution process and geographical condition of the past. The purpose of this study was to collect and identify aquatic plants of the East and the West of Mazandaran province. Therefore, sampling sites viz. stagnant water stops and irrigated farms were selected, marked out on the map and the specimens were collected. The collected plants were identified using different references in the Herbarium of Nowshahr Botanical Garden as well as Herbarium of Research Institute of Plant Science, Ferdowsi University of Mashhad. In this survey, a total of 126 aquatic plant species, belonging to 44 families were recognized. Among them, 56 species of Dicotyledones, 63 species of Monocotyledones, 4 species of Pteridophytes, 1 species of algae and 2 species of bryophytes were reported. Chorological studies showed that most of the species belonged to the Euro-Siberian, Mediterranean, Irano-Turanian (triregional and the rest to Pluriregional and Cosmopolitan phytochoria.

  3. High-irradiance responses induced by far-red light in grass seedlings of the wild type or overexpressing phytochrome A

    International Nuclear Information System (INIS)

    Casal, J.J.; Clough, R.C.; Vierstra, R.D.

    1996-01-01

    The occurrence of phytochrome-mediated high irradiance responses (HIR), previously characterised largely in dicotyledonous plants, was investigated in Triticum aestivum L., Zea mays L., Lolium multiflorum Lam. and in both wild-type Oryza sativa L. and in transgenic plants overexpressing oat phytochrome A under the control of a 35S promoter. Coleoptile growth was promoted (maize, ryegrass) or inhibited (wild-type rice) by continuous far-red light (FRc). However, at equal fluences, hourly pulses of far-red light (FRp) were equally effective, indicating that the growth responses to FRc were not true HIR. In contrast, in maize and rice, FRc increased anthocyanin content in the coleoptile in a fluence-rate dependent manner. This response was a true HIR as FRp had reduced effects. In maize, anthocyanin levels were significantly higher under FRc than under continuous red light. In rice, overexpression of phytochrome A increased the inhibition of coleoptile growth and the levels of anthocyanin under FRc but not under FRp or under continuous red light. The effect of FRc was fluence-rate dependent. In light-grown rice, overexpression of phytochrome A reduced leaf-sheath length, impaired the response to supplementary far-red light, but did not affect the response to canopy shade-light. In grasses, typical HIR, i.e. fluence-rate dependent responses showing reciprocity failure, can be induced by FRc. Under FRc, overexpressed phytochrome A operates through this action mode in transgenic rice. (author)

  4. Molecular characterization, ecology, and epidemiology of a novel Tymovirus in Asclepias viridis from Oklahoma.

    Science.gov (United States)

    Min, Byoung-Eun; Feldman, Tracy S; Ali, Akhtar; Wiley, Graham; Muthukumar, Vijay; Roe, Bruce A; Roossinck, Marilyn; Melcher, Ulrich; Palmer, Michael W; Nelson, Richard S

    2012-02-01

    Native virus-plant interactions require more understanding and their study will provide a basis from which to identify potential sources of emerging destructive viruses in crops. A novel tymovirus sequence was detected in Asclepias viridis (green milkweed), a perennial growing in a natural setting in the Tallgrass Prairie Preserve (TGPP) of Oklahoma. It was abundant within and frequent among A. viridis plants and, to varying extents, within other dicotyledonous and one grass (Panicum virgatum) species obtained from the TGPP. Extracts from A. viridis containing the sequence were infectious to a limited number of species. The virus genome was cloned and determined to be closely related to Kennedya yellow mosaic virus. The persistence of the virus within the Oklahoma A. viridis population was monitored for five successive years. Virus was present in a high percentage of plants within representative areas of the TGPP in all years and was spreading to additional plants. Virus was present in regions adjacent to the TGPP but not in plants sampled from central and south-central Oklahoma. Virus was present in the underground caudex of the plant during the winter, suggesting overwintering in this tissue. The RNA sequence encoding the virus coat protein varied considerably between individual plants (≈3%), likely due to drift rather than selection. An infectious clone was constructed and the virus was named Asclepias asymptomatic virus (AsAV) due to the absence of obvious symptoms on A. viridis.

  5. Evolutionary conservation of plant gibberellin signalling pathway components

    Directory of Open Access Journals (Sweden)

    Reski Ralf

    2007-11-01

    Full Text Available Abstract Background: Gibberellins (GA are plant hormones that can regulate germination, elongation growth, and sex determination. They ubiquitously occur in seed plants. The discovery of gibberellin receptors, together with advances in understanding the function of key components of GA signalling in Arabidopsis and rice, reveal a fairly short GA signal transduction route. The pathway essentially consists of GID1 gibberellin receptors that interact with F-box proteins, which in turn regulate degradation of downstream DELLA proteins, suppressors of GA-controlled responses. Results: Arabidopsis sequences of the gibberellin signalling compounds were used to screen databases from a variety of plants, including protists, for homologues, providing indications for the degree of conservation of the pathway. The pathway as such appears completely absent in protists, the moss Physcomitrella patens shares only a limited homology with the Arabidopsis proteins, thus lacking essential characteristics of the classical GA signalling pathway, while the lycophyte Selaginella moellendorffii contains a possible ortholog for each component. The occurrence of classical GA responses can as yet not be linked with the presence of homologues of the signalling pathway. Alignments and display in neighbour joining trees of the GA signalling components confirm the close relationship of gymnosperms, monocotyledonous and dicotyledonous plants, as suggested from previous studies. Conclusion: Homologues of the GA-signalling pathway were mainly found in vascular plants. The GA signalling system may have its evolutionary molecular onset in Physcomitrella patens, where GAs at higher concentrations affect gravitropism and elongation growth.

  6. Hemlock alkaloids from Socrates to poison aloes.

    Science.gov (United States)

    Reynolds, Tom

    2005-06-01

    Hemlock (Conium maculatum L. Umbelliferae) has long been known as a poisonous plant. Toxicity is due to a group of piperidine alkaloids of which the representative members are coniine and gamma-coniceine. The latter is the more toxic and is the first formed biosynthetically. Its levels in relation to coniine vary widely according to environmental conditions and to provenance of the plants. Surprisingly, these piperidine alkaloids have turned up in quite unrelated species in the monocotyledons as well as the dicotyledons. Aloes, for instance, important medicinal plants, are not regarded as poisonous although some species are very bitter. Nevertheless a small number of mostly local species contain the alkaloids, especially gamma-coniceine and there have been records of human poisoning. The compounds are recognized by their characteristic mousy smell. Both acute and chronic symptoms have been described. The compounds are neurotoxins and death results from respiratory failure, recalling the effects of curare. Chronic non-lethal ingestion by pregnant livestock leads to foetal malformation. Both acute and chronic toxicity are seen with stock in damp meadows and have been recorded as problems especially in North America. The alkaloids derive biosynthetically from acetate units via the polyketide pathway in contrast to other piperidine alkaloids which derive from lysine.

  7. Cloning, Expression Profiling and Functional Analysis of CnHMGS, a Gene Encoding 3-hydroxy-3-Methylglutaryl Coenzyme A Synthase from Chamaemelum nobile.

    Science.gov (United States)

    Cheng, Shuiyuan; Wang, Xiaohui; Xu, Feng; Chen, Qiangwen; Tao, Tingting; Lei, Jing; Zhang, Weiwei; Liao, Yongling; Chang, Jie; Li, Xingxiang

    2016-03-08

    Roman chamomile (Chamaemelum nobile L.) is renowned for its production of essential oils, which major components are sesquiterpenoids. As the important enzyme in the sesquiterpenoid biosynthesis pathway, 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMGS) catalyze the crucial step in the mevalonate pathway in plants. To isolate and identify the functional genes involved in the sesquiterpene biosynthesis of C. nobile L., a HMGS gene designated as CnHMGS (GenBank Accession No. KU529969) was cloned from C. nobile. The cDNA sequence of CnHMGS contained a 1377 bp open reading frame encoding a 458-amino-acid protein. The sequence of the CnHMGS protein was highly homologous to those of HMGS proteins from other plant species. Phylogenetic tree analysis revealed that CnHMGS clustered with the HMGS of Asteraceae in the dicotyledon clade. Further functional complementation of CnHMGS in the mutant yeast strain YSC6274 lacking HMGS activity demonstrated that the cloned CnHMGS cDNA encodes a functional HMGS. Transcript profile analysis indicated that CnHMGS was preferentially expressed in flowers and roots of C. nobile. The expression of CnHMGS could be upregulated by exogenous elicitors, including methyl jasmonate and salicylic acid, suggesting that CnHMGS was elicitor-responsive. The characterization and expression analysis of CnHMGS is helpful to understand the biosynthesis of sesquiterpenoid in C. nobile at the molecular level and also provides molecular wealth for the biotechnological improvement of this important medicinal plant.

  8. Structure of native cellulose microfibrils, the starting point for nanocellulose manufacture

    Science.gov (United States)

    Jarvis, Michael C.

    2017-12-01

    There is an emerging consensus that higher plants synthesize cellulose microfibrils that initially comprise 18 chains. However, the mean number of chains per microfibril in situ is usually greater than 18, sometimes much greater. Microfibrils from woody tissues of conifers, grasses and dicotyledonous plants, and from organs like cotton hairs, all differ in detailed structure and mean diameter. Diameters increase further when aggregated microfibrils are isolated. Because surface chains differ, the tensile properties of the cellulose may be augmented by increasing microfibril diameter. Association of microfibrils with anionic polysaccharides in primary cell walls and mucilages leads to in vivo mechanisms of disaggregation that may be relevant to the preparation of nanofibrillar cellulose products. For the preparation of nanocrystalline celluloses, the key issue is the nature and axial spacing of disordered domains at which axial scission can be initiated. These disordered domains do not, as has often been suggested, take the form of large blocks occupying much of the length of the microfibril. They are more likely to be located at chain ends or at places where the microfibril has been mechanically damaged, but their structure and the reasons for their sensitivity to acid hydrolysis need better characterization. This article is part of a discussion meeting issue `New horizons for cellulose nanotechnology'.

  9. Vegetation Changes in a Native Forest Produced by Atta vollenweideri Forel 1893 (Hymenoptera: Formicidae) Nests.

    Science.gov (United States)

    Sabattini, J A; Sabattini, R A; Cian, J C; Sabattini, I A

    2018-02-01

    Herbivory is an important factor to generate spatial mosaics with variations in a plant community composition and organization. The objective of this work was to determine the impact of Atta vollenweideri Forel 1893 nests on herbaceous and shrub vegetation in a degraded native forest of the Espinal ecoregion. The study was carried out in the Protected Area and Multiple Use Nature Reserve called Estancia "El Carayá" (Entre Ríos, Argentina). Ten A. vollenweideri nests were selected by simple random sampling through internal roads, and two transects were drawn from the center of the nest (0 m) up to 60 m away in opposite directions. The line intercept method was used to quantify the percentage of vegetation cover of herbaceous and shrub species, while the floristic composition was estimated by the Canfield method. Afterwards, a nonparametric test between positions and a conglomerate analysis to evaluated distance were applied. Grass species, legumes, and sedges fell in the adjacent areas to nests, highlighting the bare soil at the crest and base of the nests. Fifteen plant species were identified, and two families correspond to monocotyledonous and dicotyledonous species. In conclusion, the nests of A. vollenweideri affect the community of herbaceous and shrub vegetation of the studied degraded native forest of the Espinal ecoregion since these ants perform a high selection of herbaceous species considered as pioneers of plant successions.

  10. Moessbauer study of iron uptake in cucumber root

    Energy Technology Data Exchange (ETDEWEB)

    Kovacs, K.; Kuzmann, E., E-mail: kuzmann@para.chem.elte.hu [Eoetvoes Lorand University, Research Group for Nuclear Methods in Structural Chemistry, Hungarian Academy of Sciences, Department of Nuclear Chemistry (Hungary); Fodor, F. [Eoetvoes Lorand University, Department of Plant Physiology and Molecular Plant Biology (Hungary); Vertes, A. [Eoetvoes Lorand University, Research Group for Nuclear Methods in Structural Chemistry, Hungarian Academy of Sciences, Department of Nuclear Chemistry (Hungary); Kamnev, A. A. [Russian Academy of Sciences, Institute of Biochemistry and Physiology of Plants and Microorganisms (Russian Federation)

    2005-09-15

    {sup 57}Fe Moessbauer spectroscopy was used to study the uptake and distribution of iron in the root of cucumber plants grown in iron-deficient modified Hoagland nutrient solution and put into iron-containing solution with 10 {mu}M Fe citrate enriched with {sup 57}Fe (90%) only before harvesting. The Moessbauer spectra of the frozen roots exhibited two Fe{sup 3+} components with typical average Moessbauer parameters of {delta} = 0.5 mm s{sup -1}, {Delta} = 0.46 mm s{sup -1} and {delta} = 0.5 mm s{sup -1}, {Delta} = 1.2 mm s{sup -1} at 78 K and the presence of an Fe{sup 2+} doublet, assigned to the ferrous hexaaqua complex. This finding gives a direct evidence for the existence of Fe{sup 2+} ions produced via root-associated reduction according to the mechanism proposed for iron uptake for dicotyledonous plants. Monotonous changes in the relative content of the components were found with the time period of iron supply. The Moessbauer results are interpreted in terms of iron uptake and transport through the cell wall and membranes.

  11. Urban ecological characteristics and vascular wall flora on the Anatolian side of Istanbul, Turkey

    Directory of Open Access Journals (Sweden)

    Volkan Altay

    2010-11-01

    Full Text Available The aim of this study is to specify the urban ecologic characteristics of Istanbul and to show their reflection to the vascular wall flora of the Anatolian side, which is a distinctive wall habitat. Plants samples of the urban habitat were collected from the top and vertical surfaces of walls during 2005-2007. A total of 101 taxa (81 species, 13 subspecies and 7 varieties belonging to 74 genera and 33 families were recorded. It was determined that 80 species were Dicotyledones while 1 was Monocotyledone. The families with the largest number of taxa were Asteraceae (18 species, 22.22%, Poaceae (8 species, 9.87%, Lamiaceae and Brassicaceae (5 species, 6.17%, and Polygonaceae and Scrophulariaceae (4 species, 4.93%. The most common plant species on walls were Parietaria judaica L. (Urticaceae, Stellaria media (L. Vill. subsp. media (Caryophyllaceae, and Mercurialis annua L. (Euphorbiaceae. The percentage of phytogeographical elements among the recorded taxa varied as follows: Euro-Siberian (6 taxa, 7.41%, Mediterranean (11 taxa, 13.58%, E. Mediterranian (2 taxa, 2.47%, Irano-Turanian (1 taxon, 1.23% and unknown (61 taxa, 75.31%. It was found that 6 taxa (7.41% were cosmopolitan, 12 (14.82% were widespread while 1 (1.23% was endemic. The results were compared with some other European wall floras and some similarities and dissimilarities were noted.

  12. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes.

    Science.gov (United States)

    Eves-van den Akker, Sebastian; Lilley, Catherine J; Jones, John T; Urwin, Peter E

    2014-09-01

    Sedentary endoparasitic nematodes are obligate biotrophs that modify host root tissues, using a suite of effector proteins to create and maintain a feeding site that is their sole source of nutrition. Using assumptions about the characteristics of genes involved in plant-nematode biotrophic interactions to inform the identification strategy, we provide a description and characterisation of a novel group of hyper-variable extracellular effectors termed HYP, from the potato cyst nematode Globodera pallida. HYP effectors comprise a large gene family, with a modular structure, and have unparalleled diversity between individuals of the same population: no two nematodes tested had the same genetic complement of HYP effectors. Individuals vary in the number, size, and type of effector subfamilies. HYP effectors are expressed throughout the biotrophic stages in large secretory cells associated with the amphids of parasitic stage nematodes as confirmed by in situ hybridisation. The encoded proteins are secreted into the host roots where they are detectable by immunochemistry in the apoplasm, between the anterior end of the nematode and the feeding site. We have identified HYP effectors in three genera of plant parasitic nematodes capable of infecting a broad range of mono- and dicotyledon crop species. In planta RNAi targeted to all members of the effector family causes a reduction in successful parasitism.

  13. Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes.

    Directory of Open Access Journals (Sweden)

    Sebastian Eves-van den Akker

    2014-09-01

    Full Text Available Sedentary endoparasitic nematodes are obligate biotrophs that modify host root tissues, using a suite of effector proteins to create and maintain a feeding site that is their sole source of nutrition. Using assumptions about the characteristics of genes involved in plant-nematode biotrophic interactions to inform the identification strategy, we provide a description and characterisation of a novel group of hyper-variable extracellular effectors termed HYP, from the potato cyst nematode Globodera pallida. HYP effectors comprise a large gene family, with a modular structure, and have unparalleled diversity between individuals of the same population: no two nematodes tested had the same genetic complement of HYP effectors. Individuals vary in the number, size, and type of effector subfamilies. HYP effectors are expressed throughout the biotrophic stages in large secretory cells associated with the amphids of parasitic stage nematodes as confirmed by in situ hybridisation. The encoded proteins are secreted into the host roots where they are detectable by immunochemistry in the apoplasm, between the anterior end of the nematode and the feeding site. We have identified HYP effectors in three genera of plant parasitic nematodes capable of infecting a broad range of mono- and dicotyledon crop species. In planta RNAi targeted to all members of the effector family causes a reduction in successful parasitism.

  14. Toxicity of the fluoroquinolone antibiotics enrofloxacin and ciprofloxacin to photoautotrophic aquatic organisms.

    Science.gov (United States)

    Ebert, Ina; Bachmann, Jean; Kühnen, Ute; Küster, Anette; Kussatz, Carola; Maletzki, Dirk; Schlüter, Christoph

    2011-12-01

    The present study investigated the growth inhibition effect of the fluoroquinolone antibiotics enrofloxacin and ciprofloxacin on four photoautotrophic aquatic species: the freshwater microalga Desmodesmus subspicatus, the cyanobacterium Anabaena flos-aquae, the monocotyledonous macrophyte Lemna minor, and the dicotyledonous macrophyte Myriophyllum spicatum. Both antibiotics, which act by inhibiting the bacterial DNA gyrase, demonstrated high toxicity to A. flos-aquae and L. minor and moderate to slight toxicity to D. subspicatus and M. spicatum. The cyanobacterium was the most sensitive species with median effective concentration (EC50) values of 173 and 10.2 µg/L for enrofloxacin and ciprofloxacin, respectively. Lemna minor proved to be similarly sensitive, with EC50 values of 107 and 62.5 µg/L for enrofloxacin and ciprofloxacin, respectively. While enrofloxacin was more toxic to green algae, ciprofloxacin was more toxic to cyanobacteria. Calculated EC50s for D. subspicatus were 5,568 µg/L and >8,042 µg/L for enrofloxacin and ciprofloxacin, respectively. These data, as well as effect data from the literature, were compared with predicted and reported environmental concentrations. For two of the four species, a risk was identified at ciprofloxacin concentrations found in surface waters, sewage treatment plant influents and effluents, as well as in hospital effluents. For ciprofloxacin the results of the present study indicate a risk even at the predicted environmental concentration. In contrast, for enrofloxacin no risk was identified at predicted and measured concentrations. Copyright © 2011 SETAC.

  15. Abaxial growth and steric constraints guide leaf folding and shape in Acer pseudoplatanus.

    Science.gov (United States)

    Couturier, Etienne; Brunel, Nicole; Douady, Stéphane; Nakayama, Naomi

    2012-08-01

    How leaf shape is regulated is a long-standing question in botany. For diverse groups of dicotyledon species, lamina folding along the veins and geometry of the space available for the primordia can explain the palmate leaf morphology. Dubbed the kirigami theory, this hypothesis of fold-dependent leaf shape regulation has remained largely theoretical. Using Acer pseudoplatanus, we investigated the mechanisms behind the two key processes of kirigami leaf development. Cytological examination and quantitative analyses were used to examine the course of the vein-dependent lamina folding. Surgical ablation and tissue culturing were employed to test the effects of physical constraints on primordia growth. The final morphology of leaves growing without steric constraints were predicted mathematically. The cytological examination showed that the lamina's abaxial side along the veins grows substantially more than the adaxial side. The abaxial hypergrowth along the veins and the lamina extension correlated with the lamina folding. When a primordium was released from the physical constraints imposed by the other primordia, it rapidly grew into the newly available space, while maintaining the curvature inward. The morphology of such a leaf was predicted to lack symmetry in the lobe shapes. The enhanced growth on the abaxial side of the lamina along the veins is likely to drive lamina folding. The surgical ablation provided clear support for the space-filling nature of leaf growth; thus, steric constraints play a role in determination of the shapes of folded leaves and probably also of the final leaf morphology.

  16. Molecular Characterization of Ferulate 5-Hydroxylase Gene from Kenaf (Hibiscus cannabinus L.

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    Jonggeun Kim

    2013-01-01

    Full Text Available The purpose of this study is to clone and characterize the expression pattern of a F5H gene encoding ferulate 5-hydroxylase in the phenylpropanoid pathway from kenaf (Hibiscus cannabinus L.. Kenaf is a fast-growing dicotyledonous plant valued for its biomass. F5H, a cytochrome P450-dependent monooxygenase (CYP84, is a key enzyme for syringyl lignin biosynthesis. The full length of the F5H ortholog was cloned and characterized. The full-length F5H ortholog consists of a 1,557-bp open reading frame (ORF encoding 518 amino acids (GenBank Accession number JX524278. The deduced amino acid sequence showed that kenaf F5H had the highest similarity (78% with that of Populus trichocarpa. Transcriptional analysis of F5H ortholog was conducted using quantitative real-time PCR during the developmental stages of various tissues and in response to various abiotic stresses. The highest transcript level of the F5H ortholog was observed in immature flower tissues and in early stage (6 week-old of stem tissues, with a certain level of expression in all tissues tested. The highest transcript level of F5H ortholog was observed at the late time points after treatments with NaCl (48 h, wounding (24 h, cold (24 h, abscisic acid (24 h, and methyl jasmonate (24 h.

  17. Spread and control of blackgrass (Alopecurus myosuroides according to an increasing occurrence of resistance - Evaluation of field trials in the federal states Brandenburg, Hessen, Saxony, Saxony-Anhalt and Thuringia in the years 2000 - 2014

    Directory of Open Access Journals (Sweden)

    Meinlschmidt, Ewa

    2016-02-01

    Full Text Available An increasing occurrence of blackgrass (Alopecurus myosuroides with high densities has been reported for Brandenburg, Hessen, Saxony-Anhalt, Saxony and Thuringia. In recent years, an increasing resistance to blackgrass especially to ALS inhibitors and partially to ACCase inhibitors has been reported for some eastern federal states and Hessen, too. It was determined to what extent dicotyledonous weeds are associated with blackgrass. The efficacy of different herbicide applications was tested in field trials between 2000 and 2014. A total of 191 trials have been included in the analysis of blackgrass. Using the HRAC-classification of herbicides tested, combinations of herbicides were used which might contribute to solve problems specifically linked to the detected resistance situation of the site. The study aimed to identify the right timing of the herbicide applications as well as applications as single or serial treatments and the use of herbicide at reduced doses according to the intensity of blackgrass. In autumn, single applications of soil active herbicides were not effective enough, especially at a high density of more than 500 heads of blackgrass per m2. The mixtures of soil active herbicides with leave active herbicides applied in autumn achieved very good control. The herbicide sequences were more effective than single applications. In order to counteract further spread of herbicide resistance, the right choice of the mode of action and highly efficacious herbicide treatments are the methods of choice, of course in addition to nonchemical controlling measures such as delayed autumn drilling, ploughing and crop rotation.

  18. Biological control of Orobanche aegyptiaca by Fusarium oxysporum F. sp. Orobanchein northwest Iran.

    Science.gov (United States)

    Saremi, H; Okhovvat, S M

    2008-01-01

    Broomrape (Orobanche aegyptiaca) is one of the most serious weed pathogen on many plants all over the world, especially in northwest Iran. It causes damage on some plants particularly on tomato, cucumber and other dicotyledonous crops in zanjan province. Broomrape as weed, caused reductions in crop yield, adversely affected crop quality, and resulted in loss of cultivated land due to reduced crop alternatives. Since there were no any chemical methods and other proper technique to control this plant parasite we tried to find a good mechanism for its management in the fields. Our study showed there was a specific species, Fusarium oxysporum f. sp. orobonche that had infected Broomrapes naturally in the field. In point of fact the species was isolated from naturally infected Broomrape in studied Locations. Our surveys showed F. oxysporum f. sp. orobanche caused disease on orobanche spp. in different agricultural fields. Although there were other fungal species which can nearly manage the orobanche but it can be fungal pathogen to other plants. However the best fungal isolate can be F. oxysporum f. sp. orobanche since it may not be pathogen for other plants.

  19. Resistance of red clover (Trifolium pratense) to the root parasitic plant Orobanche minor is activated by salicylate but not by jasmonate.

    Science.gov (United States)

    Kusumoto, Dai; Goldwasser, Yaakov; Xie, Xiaonan; Yoneyama, Kaori; Takeuchi, Yasutomo; Yoneyama, Koichi

    2007-09-01

    Obligate root holoparasites of the genus Orobanche attack dicotyledonous crops and cause severe losses in many parts of the world. Chemical induction of plant defence systems such as systemic acquired resistance was proposed to be an available strategy to control the root parasite, but the detailed mechanisms involved have not been clarified. The aim of this study was to elucidate the effects of salicylic acid (SA), jasmonic acid (JA) and their analogues on resistance of red clover to Orobanche parasitism. Roots of red clover grown in plastic chambers were applied with SA, S-methyl benzo[1,2,3]thiadiazole-7-carbothioate (BTH), methyl jasmonate (MeJA) and n-propyl dihydrojasmonate (PDJ), and then were inoculated with O. minor seeds. Attachments of the parasite were observed after 5 weeks. SA and BTH, inducers of SA-mediated defences, significantly reduced the number of established parasites by more than 75 %. By contrast, MeJA and PDJ, inducers of JA-mediated defences, did not affect parasitism. The reduction in the number of established parasites by SA and BTH was due to the inhibited elongation of O. minor radicles and the activation of defence responses in the host root including lignification of the endodermis. These results suggest that SA-induced resistance, but not JA-induced resistance, is effective in inhibiting Orobanche parasitism and that the resistance is expressed by the host root both externally and internally.

  20. P-proteins in Arabidopsis are heteromeric structures involved in rapid sieve tube sealing.

    Science.gov (United States)

    Jekat, Stephan B; Ernst, Antonia M; von Bohl, Andreas; Zielonka, Sascia; Twyman, Richard M; Noll, Gundula A; Prüfer, Dirk

    2013-01-01

    Structural phloem proteins (P-proteins) are characteristic components of the sieve elements in all dicotyledonous and many monocotyledonous angiosperms. Tobacco P-proteins were recently confirmed to be encoded by the widespread sieve element occlusion (SEO) gene family, and tobacco SEO proteins were shown to be directly involved in sieve tube sealing thus preventing the loss of photosynthate. Analysis of the two Arabidopsis SEO proteins (AtSEOa and AtSEOb) indicated that the corresponding P-protein subunits do not act in a redundant manner. However, there are still pending questions regarding the interaction properties and specific functions of AtSEOa and AtSEOb as well as the general function of structural P-proteins in Arabidopsis. In this study, we characterized the Arabidopsis P-proteins in more detail. We used in planta bimolecular fluorescence complementation assays to confirm the predicted heteromeric interactions between AtSEOa and AtSEOb. Arabidopsis mutants depleted for one or both AtSEO proteins lacked the typical P-protein structures normally found in sieve elements, underlining the identity of AtSEO proteins as P-proteins and furthermore providing the means to determine the role of Arabidopsis P-proteins in sieve tube sealing. We therefore developed an assay based on phloem exudation. Mutants with reduced AtSEO expression levels lost twice as much photosynthate following injury as comparable wild-type plants, confirming that Arabidopsis P-proteins are indeed involved in sieve tube sealing.

  1. P-proteins in Arabidopsis are heteromeric structures involved in rapid sieve tube sealing

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    Stephan B Jekat

    2013-07-01

    Full Text Available Structural phloem proteins (P-proteins are characteristic components of the sieve elements in all dicotyledonous and many monocotyledonous angiosperms. Tobacco P-proteins were recently evidenced to be encoded by the widespread SEO gene family, and tobacco SEO proteins were shown to be directly involved in sieve tube sealing thus preventing the loss of photosynthate. Analysis of the two Arabidopsis SEO proteins (AtSEOa and AtSEOb indicated that the corresponding P-protein subunits do not act in a redundant manner. However, there are still pending questions regarding the interaction properties and specific functions of AtSEOa and AtSEOb as well as the general function of structural P-proteins in Arabidopsis. In this study, we characterized the Arabidopsis P-proteins in more detail. We used in planta bimolecular fluorescence complementation assays to confirm the predicted heteromeric interactions between AtSEOa and AtSEOb. Arabidopsis mutants depleted for one or both AtSEO proteins lacked the typical P-protein structures normally found in sieve elements, underlining the identity of AtSEO proteins as P-proteins and furthermore providing the means to determine the role of Arabidopsis P-proteins in sieve tube sealing. We therefore developed an assay based on phloem exudation. Mutants with reduced AtSEO expression levels lost twice as much photosynthate following injury as comparable wild-type plants, confirming that Arabidopsis P-proteins are indeed involved in sieve tube sealing. 

  2. Multiple cis-regulatory elements are involved in the complex regulation of the sieve element-specific MtSEO-F1 promoter from Medicago truncatula.

    Science.gov (United States)

    Bucsenez, M; Rüping, B; Behrens, S; Twyman, R M; Noll, G A; Prüfer, D

    2012-09-01

    The sieve element occlusion (SEO) gene family includes several members that are expressed specifically in immature sieve elements (SEs) in the developing phloem of dicotyledonous plants. To determine how this restricted expression profile is achieved, we analysed the SE-specific Medicago truncatula SEO-F1 promoter (PMtSEO-F1) by constructing deletion, substitution and hybrid constructs and testing them in transgenic tobacco plants using green fluorescent protein as a reporter. This revealed four promoter regions, each containing cis-regulatory elements that activate transcription in SEs. One of these segments also contained sufficient information to suppress PMtSEO-F1 transcription in the phloem companion cells (CCs). Subsequent in silico analysis revealed several candidate cis-regulatory elements that PMtSEO-F1 shares with other SEO promoters. These putative sieve element boxes (PSE boxes) are promising candidates for cis-regulatory elements controlling the SE-specific expression of PMtSEO-F1. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands.

  3. Phenylalanine ammonia-lyase through evolution: A bioinformatic approach

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    Shiva Hemmati

    2015-03-01

    Full Text Available Phenylalanine ammonia-lyase (PAL is the first entry enzyme of the phenylpropanoid pathway that converts phenylalanine to cinnamic acid which is the precursor of various secondary metabolites. PAL is recently formulated for phenylketonuric patients in pegylated forms; therefore, screening a PAL with the highest affinity to the substrate is of a great importance. PAL exists in all higher plants and some fungi and few bacteria. Ancestors of land plants have been adopted by evolving metabolic pathways. A multi-gene family encodes PAL by gene duplication events in most plants. In this study, the taxonomic distribution and phylogeny of pal gene found in land plants, fungi and bacteria have been analyzed. It seems that the ancestor of plants acquired a pal gene via horizontal gene transfer in symbioses with bacteria and fungi. Gymnosperms have kept a diverse set of pal genes that arose from gene duplication events. In angiosperms, after the divergence of dicotyledons from monocots, pal genes were duplicated many times. The close paralogues of pal genes in some species indicate expansion of gene families after the divergence in plant pal gene evolution. Interestingly, some of the plant pals clustered by species in a way that pals within one species are more closely related to each other than to homologs in the other species which indicates this duplication event occurred more recently.

  4. Adaptação de um pulverizador de tração humana para aplicação localizada de herbicidas Adaptation of a manual spray for herbicide application at specific site

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    C.A. Viliotti

    2009-03-01

    Full Text Available Objetivou-se com este trabalho adaptar um pulverizador de tração humana para aplicação localizada de herbicidas. Para o desenvolvimento do circuito eletrônico, foi elaborado um programa computacional em linguagem Assembly, com informações sobre a variação da resistência elétrica no LDR (Resistor Dependente de Luz referente à radiação global incidente e refletida para quatro tipos de superfícies diferentes (plantas dicotiledôneas, plantas monocotiledôneas, palhada de trigo e solo. Concluiu-se que é possível e economicamente viável a utilização do sensor LDR para detecção de plantas daninhas.The objective of this work was to adapt a manual spray for herbicide application at specific site. For the development of the electronic circuit, a computer program in Assembly language was elaborated, with information on the variation of the electric resistance in LDR (Light Dependent Resistance, referring to the incident and reflected global radiation for four types of different surfaces (dicotyledonous plants, monocotyledonous plants, wheat straw and soil. It was concluded that it is possible and economically viable to utilize the LDR sensor to detect weeds.

  5. A simple enzyme assay for dry matter digestibility and its value in studying food selection by generalist herbivores.

    Science.gov (United States)

    Choo, Gillian M; Waterman, Peter G; McKey, Doyle B; Gartlan, J Stephen

    1981-05-01

    The dry matter digestibility of 94 species of leaf was assayed by a simple method involving sequential treatment with pepsin and fungal cellulase enzymes. It was demonstrated that for foliage from rainforest trees of a wide range of dicotyledonous plant families the assay showed high positive correlation with estimates of dry matter digestibility obtained using rumenliquor from a fistulated steer. Both assays were found to reflect negative correlates of digestibility, notably fibre and condensed tannin, rather than the nutritional value of an item. The higher dry matter digestibility of immature leaves relative to mature leaves appeared to be accounted for by their lower fibre content. It is suggested that the pepsin/cellulase assay offers a cheap, quick, routine method of gaining information on the effects of some types of plant secondary compounds (digestibility reducers) on the 'food potential' of different kinds of foliage to herbivores. Its use in studies of herbivory in rainforest areas in relation to analyses for plant secondary compounds and food selection by herbivores is discussed.

  6. Cell wall accumulation of fluorescent proteins derived from a trans-Golgi cisternal membrane marker and paramural bodies in interdigitated Arabidopsis leaf epidermal cells.

    Science.gov (United States)

    Akita, Kae; Kobayashi, Megumi; Sato, Mayuko; Kutsuna, Natsumaro; Ueda, Takashi; Toyooka, Kiminori; Nagata, Noriko; Hasezawa, Seiichiro; Higaki, Takumi

    2017-01-01

    In most dicotyledonous plants, leaf epidermal pavement cells develop jigsaw puzzle-like shapes during cell expansion. The rapid growth and complicated cell shape of pavement cells is suggested to be achieved by targeted exocytosis that is coordinated with cytoskeletal rearrangement to provide plasma membrane and/or cell wall materials for lobe development during their morphogenesis. Therefore, visualization of membrane trafficking in leaf pavement cells should contribute an understanding of the mechanism of plant cell morphogenesis. To reveal membrane trafficking in pavement cells, we observed monomeric red fluorescent protein-tagged rat sialyl transferases, which are markers of trans-Golgi cisternal membranes, in the leaf epidermis of Arabidopsis thaliana. Quantitative fluorescence imaging techniques and immunoelectron microscopic observations revealed that accumulation of the red fluorescent protein occurred mostly in the curved regions of pavement cell borders and guard cell ends during leaf expansion. Transmission electron microscopy observations revealed that apoplastic vesicular membrane structures called paramural bodies were more frequent beneath the curved cell wall regions of interdigitated pavement cells and guard cell ends in young leaf epidermis. In addition, pharmacological studies showed that perturbations in membrane trafficking resulted in simple cell shapes. These results suggested possible heterogeneity of the curved regions of plasma membranes, implying a relationship with pavement cell morphogenesis.

  7. Floristic study of Khargushan Mountain, Lorestan province

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    Mohammad Mehdi Dehshiri

    2016-09-01

    Full Text Available The aim of this research was plant identification, introduction to the flora, determination of life forms and geographical distribution in Khargushan Mountain. This Mountain, with 6000 hectares, situated on the east of Poldokhtar and south-west of Khorramabad. The maximum altitude of this mountain is thought 2329 m. Plant specimens were collected from different parts of the area during two growing seasons 2013-2014. The plant biological spectrum of the area was plotted by means of life forms results. The position of the area within Iran’s phytogeography classification was studied based on geographical distribution data and references. From 211 identified species in the studied area, 3 Pteridophytes, 1 Gymnosperm, 176 dicotyledons and 31 monocotyledons were presented. These species belong to 50 families and 150 genera. The important families are Fabaceae, Asteraceae, Apiaceae and Lamiaceae with 12.79%, 10.42%, 8.05% and 7.58%, respectively. Life forms of the plant species include Therophytes 36.49%, Hemicryptophytes 31.28%, Cryptophytes 18.96%, Phanerophytes 8.06%, and Chamaephytes 5.21%. 138 species (65.4% were endemics of Irano-Turanian region; 32 species of them were endemics of Iran which among them, distribution of 4 species (Astragalus lurorum, Dionysia gaubae, Hedysarum gypsophilum and Phlomis lurestanica limited to Lorestan province.

  8. Heavy metal and nutrient uptake in plants colonizing post-flotation copper tailings.

    Science.gov (United States)

    Kasowska, Dorota; Gediga, Krzysztof; Spiak, Zofia

    2018-01-01

    Copper ore mining and processing release hazardous post-flotation wastes that are difficult for remediation. The studied tailings were extremely rich in Cu (1800 mg kg -1 ) and contaminated with Co and Mn, and contained very little available forms of P, Fe, and Zn. The plants growing in tailings were distinctly enriched in Cu, Cd, Co, Ni, and Pb, and the concentration of copper achived the critical toxicity level in shoots of Cerastium arvense and Polygonum aviculare. The redundancy analysis demonstrated significant relationship between the concentration of available forms of studied elements in substrate and the chemical composition of plant shoots. Results of the principal component analysis enabled to distinguish groups of plants which significantly differed in the pattern of element accumulation. The grass species Agrostis stolonifera and Calamagrostis epigejos growing in the tailings accumulated significantly lower amounts of Cu, but they also had the lowest levels of P, Fe, and Zn in comparison to dicotyledonous. A. stolonifera occurred to be the most suitable species for phytostabilization of the tailings with regard to its low shoot Cu content and more efficient acquisition of limiting nutrients in relation to C. epigejos. The amendments improving texture, phosphorus fertilization, and the introduction of native leguminous species were recommended for application in the phytoremediation process of the tailings.

  9. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

    KAUST Repository

    Varsani, Arvind

    2014-03-22

    The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

  10. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

    KAUST Repository

    Varsani, Arvind; Navas-Castillo, Jesú s; Moriones, Enrique; Herná ndez-Zepeda, Cecilia; Idris, Ali; Brown, Judith K.; Murilo Zerbini, F.; Martin, Darren Patrick

    2014-01-01

    The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

  11. Evidence for the endophytic colonization of Phaseolus vulgaris (common bean) roots by the diazotroph Herbaspirillum seropedicae.

    Science.gov (United States)

    Schmidt, M A; Souza, E M; Baura, V; Wassem, R; Yates, M G; Pedrosa, F O; Monteiro, R A

    2011-03-01

    Herbaspirillum seropedicae is an endophytic diazotrophic bacterium, which associates with important agricultural plants. In the present study, we have investigated the attachment to and internal colonization of Phaseolus vulgaris roots by the H. seropedicae wild-type strain SMR1 and by a strain of H. seropedicae expressing a red fluorescent protein (DsRed) to track the bacterium in the plant tissues. Two-day-old P. vulgaris roots were incubated at 30°C for 15 min with 6 x 10(8) CFU/mL H. seropedicae SMR1 or RAM4. Three days after inoculation, 4 x 10(4) cells of endophytic H. seropedicae SMR1 were recovered per gram of fresh root, and 9 days after inoculation the number of endophytes increased to 4 x 10(6) CFU/g. The identity of the recovered bacteria was confirmed by amplification and sequencing of the 16SrRNA gene. Furthermore, confocal microscopy of P. vulgaris roots inoculated with H. seropedicae RAM4 showed that the bacterial cells were attached to the root surface 15 min after inoculation; fluorescent bacteria were visible in the internal tissues after 24 h and were found in the central cylinder after 72 h, showing that H. seropedicae RAM4 is capable of colonizing the roots of the dicotyledon P. vulgaris. Determination of dry weight of common bean inoculated with H. seropedicae SMR1 suggested that this bacterium has a negative effect on the growth of P. vulgaris.

  12. Evidence for the endophytic colonization of Phaseolus vulgaris(common bean roots by the diazotroph Herbaspirillum seropedicae

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    M.A. Schmidt

    2011-03-01

    Full Text Available Herbaspirillum seropedicae is an endophytic diazotrophic bacterium, which associates with important agricultural plants. In the present study, we have investigated the attachment to and internal colonization of Phaseolus vulgaris roots by the H. seropedicae wild-type strain SMR1 and by a strain of H. seropedicae expressing a red fluorescent protein (DsRed to track the bacterium in the plant tissues. Two-day-old P. vulgaris roots were incubated at 30°C for 15 min with 6 x 10(8 CFU/mL H. seropedicae SMR1 or RAM4. Three days after inoculation, 4 x 10(4 cells of endophytic H. seropedicae SMR1 were recovered per gram of fresh root, and 9 days after inoculation the number of endophytes increased to 4 x 10(6 CFU/g. The identity of the recovered bacteria was confirmed by amplification and sequencing of the 16SrRNA gene. Furthermore, confocal microscopy of P. vulgaris roots inoculated with H. seropedicae RAM4 showed that the bacterial cells were attached to the root surface 15 min after inoculation; fluorescent bacteria were visible in the internal tissues after 24 h and were found in the central cylinder after 72 h, showing that H. seropedicae RAM4 is capable of colonizing the roots of the dicotyledon P. vulgaris. Determination of dry weight of common bean inoculated with H. seropedicae SMR1 suggested that this bacterium has a negative effect on the growth of P. vulgaris.

  13. DIET OF DENDROPSOPHUS MICROCEPHALUS AND SCARTHYLA VIGILANS (ANURA: HYLIDAE AT A LOCALITY IN NORTH-WESTERN VENEZUELA WITH NOTES ON MICROHABITAT OCCUPATION

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    KIMBERLYN A. FONSECA-PÉREZ

    Full Text Available ABSTRACT The coexistence of species with similar ecological requirements (food, space, time has typically drawn attention of researchers because competition for resources is expected to be high. The diet and microhabitat occupation of two morphologically and ecologically similar species of Hylidae (Anura, Dendropsophus microcephalus and Scarthyla vigilans, were analyzed at a locality in north-western Venezuela, with the aim of addressing the potential for space and food competition between them. Diet was estimated through the analysis of stomach contents and microhabitat occupation was estimated through recordings of perch type, height and horizontal distance to water. Thirty-six prey categories (32 families, 4 orders of arthropods were identified: 30 categories in D. microcephalus and 21 categories in S. vigilans. The most important prey (RII in D. microcephalus were Agelenidae (11.1%, Tachinidae (9.32% and Lepidoptera-larvae (7.96%. Gryllidae (14.13%, Cicadidae (9.1%, Cicadellidae (8.3% and Delphacidae (8.02% were the most important in S. vigilans. Diet overlap was relatively low (0.32. Both species have relatively generalist diets. Both species occupied the same type of perches (leaves and stems of Dicotyledons and Monocotyledons and heights (average: S. vigilans, 24 ± 16.2 cm; D. microcephalus, 22.7 ± 9.5 cm. The potential for space competition is high if perches are limited and food competition is expected to be low.

  14. Use of Essential Oils of Cinnamon, Lavender and Peppermint for Weed Control

    Directory of Open Access Journals (Sweden)

    Enio Campiglia

    Full Text Available The indiscriminate use of synthetic chemical compounds for weed control has been often responsible of damage to both the environment and the human health. To challenge these problems, in the last years research has increased its effort to find out alternative farming strategies. A feasible alternative could be the identification of natural substances with allelopathic effects for the realization of natural herbicides. Some research has already highlighted the possibility of using essential oils, extracted from aromatic plants, for weed control. The advantage in the utilization of such natural compounds is the quickly breaking down process into the environment and so the possible application in sustainable agriculture like organic farming. Objective of this research was the evaluation of the inhibition effect exerted by the essential oils of cinnamon, peppermint and lavender on seeds germination of some of the most common weeds species of the Mediterranean environment (pigweed, wild mustard and ryegrass. The results have highlighted a control in the weeds germination. Among the essential oils tested, cinnamon oil has exerted the highest inhibition effect compared with lavender and peppermint ones. The dicotyledonous species have been more susceptible compared with the monocotyledonous, even if it has been recorded only for redroot pigweed a dose able to inhibit totally the seed germination.

  15. Isolated etioplasts as test system for inhibitors of fatty acid biosynthesis

    International Nuclear Information System (INIS)

    Lichtenthaler, H.K.; Kobek, K.

    1989-01-01

    Isolated intact chloroplasts of mono- and dicotyledonous plants possess the capacity for de novo fatty acid biosynthesis, starting from 14 C-acetate. These can be taken as test system for herbicides affecting fatty acid biosynthesis as shown earlier in our laboratory. The incorporation rates of acetate into the total fatty acids depend on the photosynthetic cofactors ATP and NADPH and amount in the light to 33 kBq (oat) and 39 kBq (pea) per mg chlorophyll x h, whereas in the dark only ca. 10% of these rates are obtained. In order to establish a test system, which is fully independent of light, we isolated and characterized etioplast fractions from oat and pea seedlings with a very high capacity of de novo fatty acid biosynthesis (500 and 400 kBq per mg carotenoids in a 20 min period). This activity was blocked by herbicides such as cycloxydim, sethoxydim and diclofop in a dose-dependent manner. This new test system has the great advantage that one can verify whether inhibitors of photosynthesis affect fatty acid biosynthesis

  16. Identification and functional analysis of two alternatively spliced transcripts of ABSCISIC ACID INSENSITIVE3 (ABI3 in linseed flax (Linum usitatissimum L..

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    Yanyan Wang

    Full Text Available Alternative splicing is a popular phenomenon in different types of plants. It can produce alternative spliced transcripts that encode proteins with altered functions. Previous studies have shown that one transcription factor, ABSCISIC ACID INSENSITIVE3 (ABI3, which encodes an important component in abscisic acid (ABA signaling, is subjected to alternative splicing in both mono- and dicotyledons. In the current study, we identified two homologs of ABI3 in the genome of linseed flax. We screened two alternatively spliced flax LuABI3 transcripts, LuABI3-2 and LuABI3-3, and one normal flax LuABI3 transcript, LuABI3-1. Sequence analysis revealed that one of the alternatively spliced transcripts, LuABI3-3, retained a 6 bp intron. RNA accumulation analysis showed that all three transcripts were expressed during seed development, while subcellular localization and transgene experiments showed that LuABI3-3 had no biological function. The two normal transcripts, LuABI3-1 and LuABI3-2, are the important functional isoforms in flax and play significant roles in the ABA regulatory pathway during seed development, germination, and maturation.

  17. Current Trends in the Studies of Allelochemicals for Their Application in Practice

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    Arsen V.Viter

    2015-06-01

    Full Text Available The allelochemicals have been largely used in agriculture, forestry, landscape design and ornamental plant growing for many decades. However, there is a lack of the comprehensive studies, where existing publications are analyzed and synthesized with regards to the theoretic aspects for such usage. The objective of this paper was to systemize the advances in the research on allelochemicals’ application in practice. Numerous novel methodological propositions have risen recently. We classified them into the physical, chemical, biological, biotechnological and cropgrowing approaches. The allelochemicals consist of the wide diversity of the substances according to their chemical nature. Among these substances we outlined, firstly, the unidentified plant exudates and the products of green manuring, secondly, the chemically characterized or purified substances, which include alcohols, organic acids, aliphatic compounds, aromatic, alicyclic and nitrogen-contain organic compounds. Several groups of the biotic sources of allelochemicals were described: dicotyledonous and monocotyledonous plants, particularly under their colonization by non-pathogenic strains of Fusarium oxysporum, marine flora and fungi, which exhibit the herbicidal activity. Different targets of the allelochemical application were listed in the paper and they were categorized into several groups: higher flora, animals, unicellular and multi-cellular fungi. We concluded that there is lack of the modern multifaceted knowledge bases for the information about the allelochemical application. Those knowledge bases must be useful in order to choose the appropriate biological method for solving each particular problem of plant cultivation. To that end we systemized the results of current investigation about the usage of allelochemicals in practice.

  18. Biogenesis of protein bodies during legumin accumulation in developing olive (Olea europaea L.) seed.

    Science.gov (United States)

    Jimenez-Lopez, Jose C; Zienkiewicz, Agnieszka; Zienkiewicz, Krzysztof; Alché, Juan D; Rodríguez-García, Maria I

    2016-03-01

    Much of our current knowledge about seed development and differentiation regarding reserves synthesis and accumulation come from monocot (cereals) plants. Studies in dicotyledonous seeds differentiation are limited to a few species and in oleaginous species are even scarcer despite their agronomic and economic importance. We examined the changes accompanying the differentiation of olive endosperm and cotyledon with a focus on protein bodies (PBs) biogenesis during legumin protein synthesis and accumulation, with the aim of getting insights and a better understanding of the PBs' formation process. Cotyledon and endosperm undergo differentiation during seed development, where an asynchronous time-course of protein synthesis, accumulation, and differential PB formation patterns was found in both tissues. At the end of seed maturation, a broad population of PBs, particularly in cotyledon cells, was distinguishable in terms of number per cell and morphometric and cytochemical features. Olive seed development is a tissue-dependent process characterized by differential rates of legumin accumulation and PB formation in the main tissues integrating seed. One of the main features of the impressive differentiation process is the specific formation of a broad group of PBs, particularly in cotyledon cells, which might depend on selective accumulation and packaging of proteins and specific polypeptides into PBs. The nature and availability of the major components detected in the PBs of olive seed are key parameters in order to consider the potential use of this material as a suitable source of carbon and nitrogen for animal or even human use.

  19. A systematic review on the herbal extract Tribulus terrestris and the roots of its putative aphrodisiac and performance enhancing effect.

    Science.gov (United States)

    Qureshi, Ahmed; Naughton, Declan P; Petroczi, Andrea

    2014-03-01

    Tribulus terrestris (TT) is a dicotyledonous herbal plant of the Zygophyllaceae family. In ancient medicine, extracts of the aerial parts and fruits have been used for its diuretic, tonic, and aphrodisiac properties. Today, TT is widely used by athletes and bodybuilders based on the belief, fueled by claims in marketing information, that it can enhance testosterone concentrations. To assess TT's effect on testosterone levels in human and animals, an electronic literature search out using seven databases and the patent database up to August 2013 was carried out. Randomized control trials, which included healthy human subjects ingesting TT as sole or combined supplement, along with animal studies with TT as a sole treatment across a number of species were included. Eleven studies met the inclusion criteria, including one patent application. The results showed that trials varied in duration, dosage and supplementation with TT as sole or combined treatment, rendering meta-analysis impossible. A limited number of animal studies displayed a significant increase in serum testosterone levels after TT administration, but this effect was only noted in humans when TT was part of a combined supplement administration. Literature available for the effectiveness of TT on enhancing testosterone concentrations is limited. Evidence to date suggests that TT is ineffective for increasing testosterone levels in humans, thus marketing claims are unsubstantiated. The nitric oxide release effect of TT may offer a plausible explanation for the observed physiological responses to TT supplementation, independent of the testosterone level.

  20. Characterisation of Culex quinquefasciatus (Diptera: Culicidae larval habitats at ground level and temporal fluctuations of larval abundance in Córdoba, Argentina

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    Marta Grech

    2013-09-01

    Full Text Available The aims of this study were to characterise the ground-level larval habitats of the mosquito Culex quinquefasciatus, to determine the relationships between habitat characteristics and larval abundance and to examine seasonal larval-stage variations in Córdoba city. Every two weeks for two years, 15 larval habitats (natural and artificial water bodies, including shallow wells, drains, retention ponds, canals and ditches were visited and sampled for larval mosquitoes. Data regarding the water depth, temperature and pH, permanence, the presence of aquatic vegetation and the density of collected mosquito larvae were recorded. Data on the average air temperatures and accumulated precipitation during the 15 days prior to each sampling date were also obtained. Cx. quinquefasciatus larvae were collected throughout the study period and were generally most abundant in the summer season. Generalised linear mixed models indicated the average air temperature and presence of dicotyledonous aquatic vegetation as variables that served as important predictors of larval densities. Additionally, permanent breeding sites supported high larval densities. In Córdoba city and possibly in other highly populated cities at the same latitude with the same environmental conditions, control programs should focus on permanent larval habitats with aquatic vegetation during the early spring, when the Cx. quinquefasciatus population begins to increase.

  1. Light-stimulated cell expansion in bean (Phaseolus vulgaris L.) leaves. I. Growth can occur without photosynthesis

    Science.gov (United States)

    Van Volkenburgh, E.; Cleland, R. E.

    1990-01-01

    Cell expansion in dicotyledonous leaves is strongly stimulated by bright white light (WL), at least in part as a result of light-induced acidification of the cell walls. It has been proposed that photosynthetic reactions are required for light-stimulated transport processes across plasma membranes of leaf cells, including proton excretion. The involvement of photosynthesis in growth and wall acidification of primary leaves of bean has been tested by inhibiting photosynthesis in two ways: by reducing chlorophyll content of intact plants with tentoxin (TX) and by treating leaf discs with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). Exposure to bright WL stimulated growth of intact leaves of TX-treated plants. Discs excised from green as well as from TX-or DCMU-treated leaves also responded by growing faster in WL, as long as exogenous sucrose was supplied to the photosynthetically inhibited tissues. The WL caused acidification of the epidermal surface of intact TX-leaves, but acidification of the incubation medium by mesophyll cells only occurred when photosynthesis was not inhibited. It is concluded that light-stimulated cell enlargement of bean leaves, and the necessary acidification of epidermal cell walls, are mediated by a pigment other than chlorophyll. Light-induced proton excretion by mesophyll cells, on the other hand, may require both a photosynthetic product (or exogenous sugars) and a non-photosynthetic light effect.

  2. A membrane-bound matrix-metalloproteinase from Nicotiana tabacum cv. BY-2 is induced by bacterial pathogens

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    Wahner Verena

    2009-06-01

    Full Text Available Abstract Background Plant matrix metalloproteinases (MMP are conserved proteolytic enzymes found in a wide range of monocotyledonous and dicotyledonous plant species. Acting on the plant extracellular matrix, they play crucial roles in many aspects of plant physiology including growth, development and the response to stresses such as pathogen attack. Results We have identified the first tobacco MMP, designated NtMMP1, and have isolated the corresponding cDNA sequence from the tobacco suspension cell line BY-2. The overall domain structure of NtMMP1 is similar to known MMP sequences, although certain features suggest it may be constitutively active rather than dependent on proteolytic processing. The protein appears to be expressed in two forms with different molecular masses, both of which are enzymatically active as determined by casein zymography. Exchanging the catalytic domain of NtMMP1 with green fluorescent protein (GFP facilitated subcellular localization by confocal laser scanning microscopy, showing the protein is normally inserted into the plasma membrane. The NtMMP1 gene is expressed constitutively at a low level but can be induced by exposure to bacterial pathogens. Conclusion Our biochemical analysis of NtMMP1 together with bioinformatic data on the primary sequence indicate that NtMMP1 is a constitutively-active protease. Given its induction in response to bacterial pathogens and its localization in the plasma membrane, we propose a role in pathogen defense at the cell periphery.

  3. Seed Transmission of Beet Curly Top Virus and Beet Curly Top Iran Virus in a Local Cultivar of Petunia in Iran

    Science.gov (United States)

    Anabestani, Ameneh; Behjatnia, Seyed Ali Akbar; Izadpanah, Keramat; Tabein, Saeid

    2017-01-01

    Beet curly top virus (BCTV) and beet curly top Iran virus (BCTIV) are known as the causal agents of curly top disease in beet and several other dicotyledonous plants in Iran. These viruses are transmitted by Circulifer species, and until now, there has been no confirmed report of their seed transmission. A percentage (38.2–78.0%) of the seedlings developed from the seeds of a petunia local cultivar under insect-free conditions showed stunting, interveinal chlorosis, leaf curling, and vein swelling symptoms, and were infected by BCTV when tested by PCR. Presence of BCTV in seed extracts of petunia local cultivar was confirmed by PCR and IC-PCR, followed by sequencing. Agroinoculation of curly top free petunia plants with a BCTV infectious clone resulted in BCTV infection of plants and their developed seeds. These results show the seed infection and transmission of BCTV in a local cultivar of petunia. Similar experiments performed with BCTIV showed that this virus is also seed transmissible in the same cultivar of petunia, although with a lower rate (8.8–18.5%). Seed transmission of curly top viruses may have significant implications in the epidemiology of these viruses. PMID:29035342

  4. Black Cumin (Nigella sativa) and Its Active Constituent, Thymoquinone: An Overview on the Analgesic and Anti-inflammatory Effects.

    Science.gov (United States)

    Amin, Bahareh; Hosseinzadeh, Hossein

    2016-01-01

    For many centuries, seeds of Nigella sativa (black cumin), a dicotyledon of the Ranunculaceae family, have been used as a seasoning spice and food additive in the Middle East and Mediterranean areas. Traditionally, the plant is used for asthma, hypertension, diabetes, inflammation, cough, bronchitis, headache, eczema, fever, dizziness, and gastrointestinal disturbances. The literature regarding the biological activities of seeds of this plant is extensive, citing bronchodilative, anti-inflammatory, antinociceptive, antibacterial, hypotensive, hypolipidemic, cytotoxic, antidiabetic, and hepatoprotective effects. The active ingredients of N. sativa are mainly concentrated in the fixed or essential oil of seeds, which are responsible for most health benefits. This review will provide all updated reported activities of this plant with an emphasis on the antinociceptive and anti-inflammatory effects. Results of various studies have demonstrated that the oil, extracts, and their active ingredients, in particular, thymoquinone, possess antinociceptive and anti-inflammatory effects, supporting the common folk perception of N. Sativa as a potent analgesic and anti-inflammatory agent. Many protective properties are attributed to reproducible radical scavenging activity as well as an interaction with numerous molecular targets involved in inflammation, including proinflammatory enzymes and cytokines. However, there is a need for further investigations to find out the precise mechanisms responsible for the antinociceptive and anti-inflammatory effects of this plant and its active constituents. Georg Thieme Verlag KG Stuttgart · New York.

  5. Isolation and Expression Analysis of Novel Silicon Absorption Gene from Roots of Mangrove (Rhizophora apiculata via Suppression Subtractive Hybridization

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    Mahbod Sahebi

    2014-01-01

    Full Text Available Silicon (Si is the second most abundant element in soil after oxygen. It is not an essential element for plant growth and formation but plays an important role in increasing plant tolerance towards different kinds of abiotic and biotic stresses. The molecular mechanism of Si absorption and accumulation may differ between plants, such as monocotyledons and dicotyledons. Silicon absorption and accumulation in mangrove plants are affected indirectly by some proteins rich in serine and proline amino acids. The expression level of the genes responsible for Si absorption varies in different parts of plants. In this study, Si is mainly observed in the epidermal roots’ cell walls of mangrove plants compared to other parts. The present work was carried out to discover further information on Si stress responsive genes in Rhizophora apiculata, using the suppression subtractive hybridization technique. To construct the cDNA library, two-month-old seedlings were exposed to 0.5, 1, and 1.5 mM SiO2 for 15 hrs and for 1 to 6 days resulting in a total of 360 high quality ESTs gained. Further examination by RT-PCR and real-time qRT-PCR showed the expression of a candidate gene of serine-rich protein.

  6. Computational prediction of over-annotated protein-coding genes in the genome of Agrobacterium tumefaciens strain C58

    International Nuclear Information System (INIS)

    Yu Jia-Feng; Sui Tian-Xiang; Wang Ji-Hua; Wang Hong-Mei; Wang Chun-Ling; Jing Li

    2015-01-01

    Agrobacterium tumefaciens strain C58 is a type of pathogen that can cause tumors in some dicotyledonous plants. Ever since the genome of A. tumefaciens strain C58 was sequenced, the quality of annotation of its protein-coding genes has been queried continually, because the annotation varies greatly among different databases. In this paper, the questionable hypothetical genes were re-predicted by integrating the TN curve and Z curve methods. As a result, 30 genes originally annotated as “hypothetical” were discriminated as being non-coding sequences. By testing the re-prediction program 10 times on data sets composed of the function-known genes, the mean accuracy of 99.99% and mean Matthews correlation coefficient value of 0.9999 were obtained. Further sequence analysis and COG analysis showed that the re-annotation results were very reliable. This work can provide an efficient tool and data resources for future studies of A. tumefaciens strain C58. (special topic)

  7. Convergent Evolution towards High Net Carbon Gain Efficiency Contributes to the Shade Tolerance of Palms (Arecaceae.

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    Ren-Yi Ma

    Full Text Available Most palm species occur in the shaded lower strata of tropical rain forests, but how their traits relate to shade adaptation is poorly understood. We hypothesized that palms are adapted to the shade of their native habitats by convergent evolution towards high net carbon gain efficiency (CGEn, which is given by the maximum photosynthetic rate to dark respiration rate ratio. Leaf mass per area, maximum photosynthetic rate, dark respiration and N and P concentrations were measured in 80 palm species grown in a common garden, and combined with data of 30 palm species growing in their native habitats. Compared to other species from the global leaf economics data, dicotyledonous broad-leaved trees in tropical rainforest or other monocots in the global leaf economics data, palms possessed consistently higher CGEn, achieved by lowered dark respiration and fairly high foliar P concentration. Combined phylogenetic analyses of evolutionary signal and trait evolution revealed convergent evolution towards high CGEn in palms. We conclude that high CGEn is an evolutionary strategy that enables palms to better adapt to shady environments than coexisting dicot tree species, and may convey advantages in competing with them in the tropical forest understory. These findings provide important insights for understanding the evolution and ecology of palms, and for understanding plant shade adaptations of lower rainforest strata. Moreover, given the dominant role of palms in tropical forests, these findings are important for modelling carbon and nutrient cycling in tropical forest ecosystems.

  8. Organ accumulation and subcellular location of Cicer arietinum ST1 protein.

    Science.gov (United States)

    Albornos, Lucía; Cabrera, Javier; Hernández-Nistal, Josefina; Martín, Ignacio; Labrador, Emilia; Dopico, Berta

    2014-07-01

    The ST (ShooT Specific) proteins are a new family of proteins characterized by a signal peptide, tandem repeats of 25/26 amino acids, and a domain of unknown function (DUF2775), whose presence is limited to a few families of dicotyledonous plants, mainly Fabaceae and Asteraceae. Their function remains unknown, although involvement in plant growth, fruit morphogenesis or in biotic and abiotic interactions have been suggested. This work is focused on ST1, a Cicer arietinum ST protein. We established the protein accumulation in different tissues and organs of chickpea seedlings and plants and its subcellular localization, which could indicate the possible function of ST1. The raising of specific antibodies against ST1 protein revealed that its accumulation in epicotyls and radicles was related to their elongation rate. Its pattern of tissue location in cotyledons during seed formation and early seed germination, as well as its localization in the perivascular fibres of epicotyls and radicles, indicated a possible involvement in seed germination and seedling growth. ST1 protein appears both inside the cell and in the cell wall. This double subcellular localization was found in every organ in which the ST1 protein was detected: seeds, cotyledons and seedling epicotyls and radicles. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  9. Plántulas de algunas especies leñosas nativas y connaturalizadas del bosque subandino Silvania- Cundinamarca- Colombia

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    Barrera Torres Eduardo

    1992-06-01

    Full Text Available Con el propósito de identificar, en el medio natural, los primeros estadios de crecimiento de algunas especies de árboles y arbustos representativps de la franja inferior del Bosque Subandino, se describen las plántulas de 45 taxa de Dicotiledóneas, obtenidas mediante la germinación de semillas en condiciones de vivero semidescubierto. Entre otros caracteres observados, útiles para el reconocimiento taxonómico, se cuentan las modalidades de germinación, la estructuración y organización de los cotiledones, del hipocotilo y el epicotilo, complementados con la determinación de la filotaxis y la diferenciación foliar. Las familias con mayor número de especies estudiadas corresponden a los ordenes Fabales y Myrtales , con 13 y 6 especies, respectivamente.In order to identify in the natural medium the first growth sta tes of some trees and ahrubs represented on the inferiorfringe of the andino woods, 45 taxa of Dicotyledons seedlings are described, obtained through germination of seeds under semigreenhouse conditions. Among other characters observed which are used for taxonomic identification are: The germination, structure and organization of the Cotyledons, hypocotyl, andepicotyl coupled with the determination of the filotaxis and leaf diferentiation. The familias of the higher species studied
    correspond to the orders: Fabales and Myrtales, whith 13 and 6 species respectively.

  10. Enhancing Growth of Vigna radiata in the Presence of Pseudomonas aeruginosa Biopolymer and Metarhizium anisopliae Spores

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    Bhagwan N. Rekadwad

    2016-01-01

    Full Text Available Exopolysaccharide producing Pseudomonas aeruginosa NCIM 2945 (PANCL belonging to gamma-proteobacterium and entomopathogenic fungus Metarhizium anisopliae MCC 1129 (MAMCC belonging to Ascomycota were studied for their morphological features biochemical characteristics and plant growth promotion ability. Optimum growth of PANCL was recorded after 24 h at temperature 30°C and pH 7.0. Gram-negative PANCL appeared as white in color, one mm size, circular, opaque, and nonconsistent elevated colonies with entire margin. It has utilized dextrose, fructose, maltose, and sorbitol as carbon source and produced acid in the medium. PANCL was sensitive to Polymyxin B (300 µgm/disc followed by Neomycin (30 µgm/disc, Gentamycin (10 µgm/disc, and Chloramphenicol (30 µgm/disc. PANCL has secreted extracellular lipase, amylase, protease, and exopolysaccharides (EPS. Another fungal strain MAMCC sporulated after 168 h at temperature 30°C and pH 7.0. MAMCC has septate-white mycelium and bears dirty green colored spores. Growth of MAMCC was enhanced in the presence of Neem and Karela-Amla oil (0.1 mL each. Extracellular polysaccharide produced by PANCL and spores of MAMCC promoted growth of dicotyledon Vigna radiata (Mung individually as well as in consortium. Considerable increase in dry weight of Vigna radiata was recorded. Thus, reported PANCL and MAMCC strains have promoted growth Vigna radiata and may be a solution for sustainable agriculture.

  11. The use of cluster analysis for plant grouping by their tolerance to soil contamination with hydrocarbons at the germination stage.

    Science.gov (United States)

    Potashev, Konstantin; Sharonova, Natalia; Breus, Irina

    2014-07-01

    Clustering was employed for the analysis of obtained experimental data set (42 plants in total) on seed germination in leached chernozem contaminated with kerosene. Among investigated plants were 31 cultivated plants from 11 families (27 species and 20 varieties) and 11 wild plant species from 7 families, 23 annual and 19 perennial/biannual plant species, 11 monocotyledonous and 31 dicotyledonous plants. Two-dimensional (two-parameter) clustering approach, allowing the estimation of tolerance of germinating seeds using a pair of independent parameters (С75%, V7%) was found to be most effective. These parameters characterized the ability of seeds to both withstand high concentrations of contaminants without the significant reduction of the germination, and maintain high germination rate within certain contaminant concentrations. The performed clustering revealed a number of plant features, which define the relation of a particular plant to a particular tolerance cluster; it has also demonstrated the possibility of generalizing the kerosene results for n-tridecane, which is one of the typical kerosene components. In contrast to the "manual" plant ranking based on the assessment of germination at discrete concentrations of the contaminant, the proposed clustering approach allowed a generalized characterization of the seed tolerance/sensitivity to hydrocarbon contaminants. Copyright © 2014 Elsevier B.V. All rights reserved.

  12. Full establishment of arbuscular mycorrhizal symbiosis in rice occurs independently of enzymatic jasmonate biosynthesis.

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    Caroline Gutjahr

    Full Text Available Development of the mutualistic arbuscular mycorrhiza (AM symbiosis between most land plants and fungi of the Glomeromycota is regulated by phytohormones. The role of jasmonate (JA in AM colonization has been investigated in the dicotyledons Medicago truncatula, tomato and Nicotiana attenuata and contradicting results have been obtained with respect to a neutral, promotive or inhibitory effect of JA on AM colonization. Furthermore, it is currently unknown whether JA plays a role in AM colonization of monocotyledonous roots. Therefore we examined whether JA biosynthesis is required for AM colonization of the monocot rice. To this end we employed the rice mutant constitutive photomorphogenesis 2 (cpm2, which is deficient in JA biosynthesis. Through a time course experiment the amount and morphology of fungal colonization did not differ between wild-type and cpm2 roots. Furthermore, no significant difference in the expression of AM marker genes was detected between wild type and cpm2. However, treatment of wild-type roots with 50 μM JA lead to a decrease of AM colonization and this was correlated with induction of the defense gene PR4. These results indicate that JA is not required for AM colonization of rice but high levels of JA in the roots suppress AM development likely through the induction of defense.

  13. Análisis florístico del Parque Nacional Natural Amacayucu e Isla Mocagua, Amazonas (Colombia

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    Rudas L. Agustín

    1998-11-01

    Full Text Available A floristic study of the Parque Nacional Natural Amacayacu and Isla Mocagua shows 1348 species, 574 genera and 128 families of vascular plants; 82% of the species are dicotyledons, 14% monocotyledons, 3.7% ferns and ca. 0.2% gymnosperms. Leguminosae, Rubiaceae, Melastomataceae, Moraceae and Annonaceae represent 33% of the dicotyledonous species, whereas Araceae, Arecaceae and Poaceae are the main monocotyledonous families. Most families are Gondwanaland elements with sorne Laurasian elements; others are of unknown origino The main habit is represented by trees and shrubs (47% and 19% of the species, 25% are vines and herbs, 9% epiphytes and hemiepiphytes, and En un estudio florístico en cinco sectores del Parque Nacional Natural Amacayacu y en la Isla Mocagua, se encontraron 1348 especies de plantas vasculares, distribuidas en 574 géneros y 128 familias; 82% de las especies corresponden a dicotiledóneas, 14% a monocotiledóneas, 3.7% a pteridófitos y ca. de 0.2% a  gimnospermas. Las principales familias fueron Leguminosae, Rubiaceae, Melastomataceae, Moraceae y Annonaceae  (dicotiledóneas, y Araceae, Arecaceae y Poaceae (monocotiledóneas. La mayoría de las familias corresponde a elementos de Gondwana con algunos elementos Laurásicos y otros sin origen asignado. El mayor número de las especies tienen hábito arbóreo o arbustivo (47% y 19% respectivamente, ca. del 25% de las especies son lianas y hierbas, 9% epífitas y hemiepífitas, mientras que las parásitas y saprófitas apenas representan < 1%. Los bosques de tierra firme presentan casi el doble de especies de arbustos, hierbas y epífitos que las planicies inundables. Algunos sectores del Parque relativamente distantes entre sí presentan una gran similaridad en cuanto a composición florística, hecho que puede atribuirse principalmente al tipo de agua (blanca, negra o mixta que los irriga. Una comparación con regiones similares en el corredor pacífico, el piedemonte amaz

  14. LEVANTAMENTO DA FLORA EMERGENTE DE PLANTAS DANINHAS EM SISTEMAS DE COBERTURA DO SOLO SURVEY OF THE WEED EMERGING FLORA IN SOIL COVER SYSTEMS

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    Nicolas Bernon

    2007-09-01

    b tillage systems (minimum tillage; cover removal; no-tillage on grown weeds; conventional tillage. Evaluation of the emerging flora showed that among cover crops the treatments with pearl millet and the brachiaria presented low monocotyledonous incidence (0.66 pl/m², differing however from the conventional tillage (50.33 pl/m². The dicotyledonous occurrence was inhibited by crotalaria presence, saracen wheat and pearl mullet (1.00, 1.00, and 1.33pl/m², respectively, only oats differing within cover crops (18.66 pl/m². The residual population of pearl millet (130.66 pl/m² was statistically higher than residues of brachiaria, gray mucuna, and striped mucuna (1.00, 0.00, and 0.33 pl/m², respectively. It was found that the complete soil cover was achieved with brachiaria, which controlled weeds efficiently. Pearl millet and crotalaria showed good mono- and dicotyledonous control, achieving good soil cover. However, the emergence of volunteer pearl millet may pose management problems for the subsequent crop.

    KEY-WORDS: Crop systems; weeds; flora.

  15. The onion (Allium cepa L. R2R3-MYB gene MYB1 regulates anthocyanin biosynthesis

    Directory of Open Access Journals (Sweden)

    Kathy Schwinn

    2016-12-01

    Full Text Available Bulb colour is an important consumer trait for onion (Allium cepa L., Allioideae, Asparagales. The bulbs accumulate a range of flavonoid compounds, including anthocyanins (red, flavonols (pale yellow and chalcones (bright yellow. Flavonoid regulation is poorly characterised in onion and in other plants belonging to the Asparagales, despite being a major plant order containing many important crop and ornamental species. R2R3-MYB transcription factors associated with the regulation of distinct branches of the flavonoid pathway were isolated from onion. These belonged to sub-groups (SGs that commonly activate anthocyanin (SG6, MYB1 or flavonol (SG7, MYB29 production, or repress phenylpropanoid/flavonoid synthesis (SG4, MYB4, MYB5. MYB1 was demonstrated to be a positive regulator of anthocyanin biosynthesis by the induction of anthocyanin production in onion tissue when transiently overexpressd and by reduction of pigmentation when transiently repressed via RNAi. Furthermore, ectopic red pigmentation was observed in garlic (A. sativum L. plants stably transformed with a construct for co-overexpression of MYB1 and a bHLH partner. MYB1 also was able to complement the acyanic petal phenotype of a defined R2R3-MYB anthocyanin mutant in Antirrhinum majus of the asterid clade of eudicots. The availability of sequence information for flavonoid-related MYBs from onion enabled phylogenetic groupings to be determined across monocotyledonous and dicotyledonous species, including the identification of characteristic amino acid motifs. This analysis suggests that divergent evolution of the R2R3-MYB family has occurred between Poaceae/Orchidaceae and Allioideae species. The DNA sequences identified will be valuable for future analysis of classical flavonoid genetic loci in Allium crops and will assist the breeding of these important crop species.

  16. Chemical composition and digestibility of some browse plant species collected from Algerian arid rangelands

    Energy Technology Data Exchange (ETDEWEB)

    Boufennara, S.; Lopez, S.; Boussebouna, H.; Bodas, R.; Bouazza, L.

    2012-11-01

    Many wild browse and bush species are undervalued mainly because of insufficient knowledge about their potential feeding value. The objective was to evaluate some nutritional attributes of various Algerian browse and shub species (Atriplex halimus, Artemisia campestris, Artemisia herba-alba, Astragalus gombiformis, Calobota saharae, Retama raetam, Stipagrostis pungens, Lygeum spartum and Stipa tenacissima). Chemical composition, phenols and tannins concentration, in vitro digestibility, in vitro gas production kinetics and in vitro bio-assay for assessment of tannins using buffered rumen fluid, and in situ disappearence of the edible parts of the plants (leaves, thin twigs and flowers) were determined. In general, protein content in dicotyledon species was always greater than in monocotyledon grasses, these showing higher neutral and acid detergent fibre and lower lignin contents than dicots. The tannin concentrations varied considerably between species, but in general the plants investigated in this study had low tannin contents (except for Artemisia spp. and S. tenacissima). Monocots showed lower in vitro and in situ digestibilities, fermentation rate, cumulative gas production and extent of degradation than dicot species. The plants were clustered by principal components analysis in two groups: poor-quality grasses and the most digestible dicot species. Chemical composition (neutral detergent fibre and protein) and digestibility were the main influential variables determining the ranking. In conclusion, A. halimus, A. campestris, A. herba-alba and A. gombiformis can be considered of greater nutritional value than the highly fibrous and low digestible grasses (S. pungens, L. spartum and S. tenacissima) that should be considered emergency roughages. (Author) 46 refs.

  17. The Onion (Allium cepa L.) R2R3-MYB Gene MYB1 Regulates Anthocyanin Biosynthesis

    Science.gov (United States)

    Schwinn, Kathy E.; Ngo, Hanh; Kenel, Fernand; Brummell, David A.; Albert, Nick W.; McCallum, John A.; Pither-Joyce, Meeghan; Crowhurst, Ross N.; Eady, Colin; Davies, Kevin M.

    2016-01-01

    Bulb color is an important consumer trait for onion (Allium cepa L., Allioideae, Asparagales). The bulbs accumulate a range of flavonoid compounds, including anthocyanins (red), flavonols (pale yellow), and chalcones (bright yellow). Flavonoid regulation is poorly characterized in onion and in other plants belonging to the Asparagales, despite being a major plant order containing many important crop and ornamental species. R2R3-MYB transcription factors associated with the regulation of distinct branches of the flavonoid pathway were isolated from onion. These belonged to sub-groups (SGs) that commonly activate anthocyanin (SG6, MYB1) or flavonol (SG7, MYB29) production, or repress phenylpropanoid/flavonoid synthesis (SG4, MYB4, MYB5). MYB1 was demonstrated to be a positive regulator of anthocyanin biosynthesis by the induction of anthocyanin production in onion tissue when transiently overexpressed and by reduction of pigmentation when transiently repressed via RNAi. Furthermore, ectopic red pigmentation was observed in garlic (Allium sativum L.) plants stably transformed with a construct for co-overexpression of MYB1 and a bHLH partner. MYB1 also was able to complement the acyanic petal phenotype of a defined R2R3-MYB anthocyanin mutant in Antirrhinum majus of the asterid clade of eudicots. The availability of sequence information for flavonoid-related MYBs from onion enabled phylogenetic groupings to be determined across monocotyledonous and dicotyledonous species, including the identification of characteristic amino acid motifs. This analysis suggests that divergent evolution of the R2R3-MYB family has occurred between Poaceae/Orchidaceae and Allioideae species. The DNA sequences identified will be valuable for future analysis of classical flavonoid genetic loci in Allium crops and will assist the breeding of these important crop species. PMID:28018399

  18. Expression, purification and preliminary X-ray diffraction studies of VERNALIZATION1208–341 from Arabidopsis thaliana

    International Nuclear Information System (INIS)

    King, Gordon; Hill, Justine M.; Martin, Jennifer L.; Mylne, Joshua S.

    2009-01-01

    A C-terminal fragment of VERNALIZATION1 from A. thaliana, a DNA-binding protein required for the acceleration of flowering in response to prolonged cold treatment, was crystallized. X-ray diffraction data were collected to a resolution of 2.1 Å. VERNALIZATION1 (VRN1) is required in the model plant Arabidopsis thaliana for the epigenetic suppression of the floral repressor FLC by prolonged cold treatment. Stable suppression of FLC accelerates flowering, a physiological process known as vernalization. VRN1 is a 341-residue DNA-binding protein that contains two plant-specific B3 domains (B3a and B3b), a putative nuclear localization sequence (NLS) and two putative PEST domains. VRN1 208–341 includes the second B3 domain and a region upstream that is highly conserved in the VRN1 orthologues of other dicotyledonous plants. VRN1 208–341 was crystallized by the hanging-drop method in 0.05 M sodium acetate pH 6.0 containing 1.0 M NaCl and 18%(w/v) PEG 3350. Preliminary X-ray diffraction data analysis revealed that the VRN1 208–341 crystal diffracted to 2.1 Å and belonged to space group C2, with unit-cell parameters a = 105.2, b = 47.9, c = 61.2 Å, α = 90.0, β = 115.4, γ = 90.0°. Assuming that two molecules occupy the asymmetric unit, a Matthews coefficient of 2.05 Å 3 Da −1 and a solvent content of 40.1% were calculated

  19. The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.

    Science.gov (United States)

    Yang, Chao; Ma, Yamei; Li, Jianxiong

    2016-10-01

    YABBY genes encode seed plant-specific transcription factors that play pivotal roles in diverse aspects of leaf, shoot, and flower development. Members of the YABBY gene family are primarily expressed in lateral organs in a polar manner and function to specify abaxial cell fate in dicotyledons, but this polar expression is not conserved in monocotyledons. The function of YABBY genes is therefore not well understood in monocotyledons. Here we show that overexpression of the rice (Oryza sativa L.) YABBY4 gene (OsYABBY4) leads to a semi-dwarf phenotype, abnormal development in the uppermost internode, an increased number of floral organs, and insensitivity to gibberellin (GA) treatment. We report on an important role for OsYABBY4 in negative control of the expression of a GA biosynthetic gene by binding to the promoter region of the gibberellin 20-oxidase 2 gene (GA20ox2), which is a direct target of SLR1 (the sole DELLA protein negatively controlling GA responses in rice). OsYABBY4 also suppresses the expression level of SLR1 and interacts with SLR1 protein. The interaction inhibits GA-dependent degradation of SLR1 and therefore leads to GA insensitivity. These data together suggest that OsYABBY4 serves as a DNA-binding intermediate protein for SLR1 and is associated with the GA signaling pathway regulating gene expression during plant growth and development. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  20. Glufosinate (phosphinothricin), a natural amino acid with unexpected herbicidal properties.

    Science.gov (United States)

    Hoerlein, G

    1994-01-01

    Glufosinate ammonium (phosphinothricin ammonium) (GLA) is the active ingredient of Basta and several other herbicides used worldwide. It is produced as part of the tripeptide L-phosphinothricyl-L-alanyl-L-alanin, which was first isolated from Streptomyces viridichromogenes or Streptomyces hygroscopicus. Its structure is confirmed by degradation and synthesis. Several processes for the preparation of D,L- and L-phosphinothricin are described. Glufosinate is a structural analog of glutamate and inhibits the glutamine synthetase. The result is a rapid build-up of a high ammonia level and a concomitant depletion of glutamine and several other amino acids in the plant. These effects are accompanied by a rapid decline of photosynthetic CO2-fixation and are followed by chlorosis and desiccation. The results of numerous toxicological studies show that glufosinate ammonium and its commercial formulations are safe for users and consumers under the conditions of recommended use. The fast and complete degradation in soil and surface water prevents movement of residues into groundwater. The toxicological threshold levels for all the nontarget organisms tested are well above the potential exposure levels and therefore do not reflect any hazard for nontarget organisms in the ecosystem. Basta is a nonselective foliar applied herbicide for the control of undesirable mono- and dicotyledonous plants in orchards, vineyards, and plantations for minimum tillage, and as a harvest aid. A synthetic phosphinothricin acetyltransferase (PAT) gene has been introduced via Agrobacterium tumefaciens into dicot crops, such as like tobacco, tomato, spring and winter rapeseed, alfalfa, and several horticultural crops. The PAT gene was also successfully introduced into maize protoplasts that could be regenerated into fertile plants. All transgenic crop plants tolerated a two- to threefold field dosage of Basta.

  1. Flora characteristics of Chenier Wetland in Bohai Bay and biogeographic relations with adjacent wetlands

    Science.gov (United States)

    Zhao, Yanyun; Lu, Zhaohua; Liu, Jingtao; Hu, Shugang

    2017-12-01

    A key step towards the restoration of heavily disturbed fragile coastal wetland ecosystems is determining the composition and characteristics of the plant communities involved. This study determined and characterized the community of higher plants in the Chenier wetland of Bohai Bay using a combination of field surveys, quadrat approaches, and multivariate statistical analyses. This community was then compared to other adjacent wetlands (Tianjin, Qinhuangdao, Laizhouwan, Jiaozhouwan, and Yellow River Delta wetland) located near the Huanghai and Bohai Seas using principal coordinate analysis (PCoA). Results showed a total of 56 higher plant species belonging to 52 genera from 20 families in Chenier wetland, the majority of which were dicotyledons. Single-species families were predominant, while larger families, including Gramineae, Compositae, Leguminosae, and Chenopodiaceae contained a higher number of species (each⩾6 species). Cosmopolitan species were also dominant with apparent intrazonality. Abundance (number of species) of temperate species was twice that of tropical taxa. Species number of perennial herbs, such as Gramineae and Compositae, was generally higher. Plant diversity in the Chenier wetland, based on the Shannon-Wiener index, was observed to be between the Qinhuangdao and Laizhouwan indices, while no significant difference was found in other wetlands using the Simpson index. Despite these slight differences in diversity, PCoA based on species abundance and composition of the wetland flora suggest that the Bohai Chenier community was highly similar to the coastal wetlands in Tianjin and Laizhouwan, further suggesting that these two wetlands could be important breeding grounds and resources for the restoration of the plant ecosystem in the Chenier wetland.

  2. Use of higher plants as screens for toxicity assessment.

    Science.gov (United States)

    Kristen, U

    1997-01-01

    This review deals with the use of entire plants, seedlings, cell suspension cultures and pollen tubes for the estimation of potential toxicity in the environment, and for risk assessment of chemicals and formulations of human relevance. It is shown that the roots of onions and various crop seedlings, as well as in vitro growing pollen tubes of some mono- and dicotyledonous plants, are most frequently used to obtain toxicity data by determination of root and tube growth inhibition. Both roots and pollen tubes are chloroplast free, non-photosynthetic systems and, therefore, with regard to their cytotoxic reactions are closer to vertebrate tissues and cells than are chloroplast-containing plant organs. Root tips and anthers of flower buds are shown to be applicable to genotoxicity screening by microscopic analysis of mitotic or meiotic aberrations during cell division or microspore development, respectively. The processes of mitosis and meiosis are similar in plants and animals. Therefore, meristematic and sporogenic tissues of plants generally show patterns of cytotoxic response similar to those of embryogenic and spermatogenic tissues of vertebrates. The suitability of root tips, cell suspensions and pollen tubes for the investigation of mechanisms of toxic action and for the analysis of structure-activity relationships is also demonstrated. Two plant-based assays, the Allium test and the pollen tube growth test, both currently being evaluated alongside with established mammalian in vivo and in vitro protocols, are emphasized with regard to their potential use as alternatives to animal in vivo toxicity tests. For both assays, preliminary results indicate that the tips of growing roots and the rapidly elongating pollen tubes of certain higher plant species are as reliable as mammalian cell lines for detecting basal cytotoxicity. It is suggested that seeds and pollen grains, in particular, provide easily storable and convenient systems for inexpensive, relatively

  3. Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts.

    Science.gov (United States)

    Ding, Xin Shun; Schneider, William L; Chaluvadi, Srinivasa Rao; Mian, M A Rouf; Nelson, Richard S

    2006-11-01

    Virus-induced gene silencing (VIGS) is used to analyze gene function in dicotyledonous plants but less so in monocotyledonous plants (particularly rice and corn), partially due to the limited number of virus expression vectors available. Here, we report the cloning and modification for VIGS of a virus from Festuca arundinacea Schreb. (tall fescue) that caused systemic mosaic symptoms on barley, rice, and a specific cultivar of maize (Va35) under greenhouse conditions. Through sequencing, the virus was determined to be a strain of Brome mosaic virus (BMV). The virus was named F-BMV (F for Festuca), and genetic determinants that controlled the systemic infection of rice were mapped to RNAs 1 and 2 of the tripartite genome. cDNA from RNA 3 of the Russian strain of BMV (R-BMV) was modified to accept inserts from foreign genes. Coinoculation of RNAs 1 and 2 from F-BMV and RNA 3 from R-BMV expressing a portion of a plant gene to leaves of barley, rice, and maize plants resulted in visual silencing-like phenotypes. The visual phenotypes were correlated with decreased target host transcript levels in the corresponding leaves. The VIGS visual phenotype varied from maintained during silencing of actin 1 transcript expression to transient with incomplete penetration through affected tissue during silencing of phytoene desaturase expression. F-BMV RNA 3 was modified to allow greater accumulation of virus while minimizing virus pathogenicity. The modified vector C-BMV(A/G) (C for chimeric) was shown to be useful for VIGS. These BMV vectors will be useful for analysis of gene function in rice and maize for which no VIGS system is reported.

  4. Genome-wide analysis of the GRAS gene family in Prunus mume.

    Science.gov (United States)

    Lu, Jiuxing; Wang, Tao; Xu, Zongda; Sun, Lidan; Zhang, Qixiang

    2015-02-01

    Prunus mume is an ornamental flower and fruit tree in Rosaceae. We investigated the GRAS gene family to improve the breeding and cultivation of P. mume and other Rosaceae fruit trees. The GRAS gene family encodes transcriptional regulators that have diverse functions in plant growth and development, such as gibberellin and phytochrome A signal transduction, root radial patterning, and axillary meristem formation and gametogenesis in the P. mume genome. Despite the important roles of these genes in plant growth regulation, no findings on the GRAS genes of P. mume have been reported. In this study, we discerned phylogenetic relationships of P. mume GRAS genes, and their locations, structures in the genome and expression levels of different tissues. Out of 46 identified GRAS genes, 45 were located on the 8 P. mume chromosomes. Phylogenetic results showed that these genes could be classified into 11 groups. We found that Group X was P. mume-specific, and three genes of Group IX clustered with the rice-specific gene Os4. We speculated that these genes existed before the divergence of dicotyledons and monocotyledons and were lost in Arabidopsis. Tissue expression analysis indicated that 13 genes showed high expression levels in roots, stems, leaves, flowers and fruits, and were related to plant growth and development. Functional analysis of 24 GRAS genes and an orthologous relationship analysis indicated that many functioned during plant growth and flower and fruit development. Our bioinformatics analysis provides valuable information to improve the economic, agronomic and ecological benefits of P. mume and other Rosaceae fruit trees.

  5. Cretaceous origin of dogwoods: an anatomically preserved Cornus (Cornaceae fruit from the Campanian of Vancouver Island

    Directory of Open Access Journals (Sweden)

    Brian A. Atkinson

    2016-12-01

    Full Text Available Background Cornaceae consists of 58 species, all within the genus Cornus. The Cenozoic record of Cornus is extensive and well documented. Molecular divergence-time studies suggest that crown-group Cornus may have originated by the Late Cretaceous. However, there has been no formal report of Cornus from Cretaceous deposits. Here, we characterize a permineralized fossil fruit assignable to Cornus subg. Cornus from the Upper Cretaceous (Campanian Shelter Point locality of Vancouver Island, British Columbia, Canada. Methods Serial sections of the specimen were made using the cellulose acetate peel technique. Peels were mounted onto microscope slides and studied by light microscopy. Results The fossil fruit consists of a tri-locular woody endocarp with dorsal germination valves. The locules are sub-triangular to ellipsoidal in transverse section and are separated by thin septa. Endocarp tissue consists of elongated and isodiametric sclereids and secretory cavities. Internal vascular tissue was not observed, but is interpreted to have been located along the outer periphery of the septa for some length, common in many cornalean taxa. There is one seed in each locule, one of which was found to have endosperm and a dicotyledonous embryo. Discussion Woody endocarps with germination valves, without central vascular bundles, and with one seed per locule are characteristic of several families within the order Cornales. The interpreted vascular pattern and presence of secretory cavities indicates that the fossil fruit is assignable to Cornus subg. Cornus. Comparative analysis suggests that the fossil is most similar to Cornus piggae, a species described from the Paleocene of North Dakota. This fossil is the first evidence of crown-group Cornaceae from the Cretaceous and sheds light on both the plesiomorphic fruit characters and the timing of the initial diversification of the family and basal asterid lineage, Cornales.

  6. Genome-wide analysis of the MYB gene family in physic nut (Jatropha curcas L.).

    Science.gov (United States)

    Zhou, Changpin; Chen, Yanbo; Wu, Zhenying; Lu, Wenjia; Han, Jinli; Wu, Pingzhi; Chen, Yaping; Li, Meiru; Jiang, Huawu; Wu, Guojiang

    2015-11-01

    The MYB proteins comprise one of the largest transcription factor families in plants, and play key roles in regulatory networks controlling development, metabolism, and stress responses. A total of 125 MYB genes (JcMYB) have been identified in the physic nut (Jatropha curcas L.) genome, including 120 2R-type MYB, 4 3R-MYB, and 1 4R-MYB genes. Based on exon-intron arrangement of MYBs from both lower (Physcomitrella patens) and higher (physic nut, Arabidopsis, and rice) plants, we can classify plant MYB genes into ten groups (MI-X), except for MIX genes which are nonexistent in higher plants. We also observed that MVIII genes may be one of the most ancient MYB types which consist of both R2R3- and 3R-MYB genes. Most MYB genes (76.8% in physic nut) belong to the MI group which can be divided into 34 subgroups. The JcMYB genes were nonrandomly distributed on its 11 linkage groups (LGs). The expansion of MYB genes across several subgroups was observed and resulted from genome triplication of ancient dicotyledons and from both ancient and recent tandem duplication events in the physic nut genome. The expression patterns of several MYB duplicates in the physic nut showed differences in four tissues (root, stem, leaf, and seed), and 34 MYB genes responded to at least one abiotic stressor (drought, salinity, phosphate starvation, and nitrogen starvation) in leaves and/or roots based on the data analysis of digital gene expression tags. Overexpression of the JcMYB001 gene in Arabidopsis increased its sensitivity to drought and salinity stresses. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. An extensive alien plant inventory from the inhabited areas of galapagos.

    Directory of Open Access Journals (Sweden)

    Anne Guézou

    Full Text Available BACKGROUND: Plant invasions are causing habitat degradation in Galapagos. Problems are concentrated on the four inhabited islands. Plants introduced to rural areas in the humid highlands and urban areas on the arid coast act as foci for invasion of the surrounding Galapagos National Park. METHODOLOGY/PRINCIPAL FINDINGS: Here we present results of the most comprehensive inventory to date of alien vascular plants in the inhabited areas of Galapagos. The survey was conducted between 2002 and 2007, in 6031 properties (97% of the total on Floreana, Isabela, San Cristobal and Santa Cruz Islands. In total 754 alien vascular plant taxa were recorded, representing 468 genera in 123 families. Dicotyledons represented 554 taxa, monocotyledons 183, there were 7 gymnosperms and 10 pteridophytes. Almost half (363 of the taxa were herbaceous. The most represented families were Fabaceae (sensu lato, Asteraceae and Poaceae. The three most recorded species in the humid rural areas were Psidium guajava, Passiflora edulis and Bryophyllum pinnatum, and in the dry urban areas, Aloe vera, Portulaca oleracea and Carica papaya. In total, 264 (35% taxa were recorded as naturalized. The most common use for taxa was ornamental (52%. CONCLUSIONS/SIGNIFICANCE: This extensive survey has increased the known alien vascular flora of Galapagos by 257 species, giving a ratio of alien to native taxa of 1.57:1. It provides a crucial baseline for plant invasion management in the archipelago and contributes data for meta analyses of invasion processes worldwide. A repeat of the survey in the future would act as an effective early detection tool to help avoid further invasion of the Galapagos National Park.

  8. Use of ITS2 region as the universal DNA barcode for plants and animals.

    Science.gov (United States)

    Yao, Hui; Song, Jingyuan; Liu, Chang; Luo, Kun; Han, Jianping; Li, Ying; Pang, Xiaohui; Xu, Hongxi; Zhu, Yingjie; Xiao, Peigen; Chen, Shilin

    2010-10-01

    The internal transcribed spacer 2 (ITS2) region of nuclear ribosomal DNA is regarded as one of the candidate DNA barcodes because it possesses a number of valuable characteristics, such as the availability of conserved regions for designing universal primers, the ease of its amplification, and sufficient variability to distinguish even closely related species. However, a general analysis of its ability to discriminate species in a comprehensive sample set is lacking. In the current study, 50,790 plant and 12,221 animal ITS2 sequences downloaded from GenBank were evaluated according to sequence length, GC content, intra- and inter-specific divergence, and efficiency of identification. The results show that the inter-specific divergence of congeneric species in plants and animals was greater than its corresponding intra-specific variations. The success rates for using the ITS2 region to identify dicotyledons, monocotyledons, gymnosperms, ferns, mosses, and animals were 76.1%, 74.2%, 67.1%, 88.1%, 77.4%, and 91.7% at the species level, respectively. The ITS2 region unveiled a different ability to identify closely related species within different families and genera. The secondary structure of the ITS2 region could provide useful information for species identification and could be considered as a molecular morphological characteristic. As one of the most popular phylogenetic markers for eukaryota, we propose that the ITS2 locus should be used as a universal DNA barcode for identifying plant species and as a complementary locus for CO1 to identify animal species. We have also developed a web application to facilitate ITS2-based cross-kingdom species identification (http://its2-plantidit.dnsalias.org).

  9. Molecular cloning and functional characterization of multiple NADPH-cytochrome P450 reductases from Andrographis paniculata.

    Science.gov (United States)

    Lin, Huixin; Wang, Jian; Qi, Mengdie; Guo, Juan; Rong, Qixian; Tang, Jinfu; Wu, Yisheng; Ma, Xiaojing; Huang, Luqi

    2017-09-01

    Andrographis paniculata (Burm.f.) Wall. ex Nees is widely used as medicinal herb in Southern and Southeastern Asia and andrographolide is its main medicinal constituent. Based on the structure of andrographolide, it has been proposed that cytochrome P450 enzymes play vital roles on its biosynthesis. NADPH:cytochrome P450 reductase (CPR) is the most important redox partner of multiple P450s. In this study, three CPRs were identified in the genomic data of A. paniculata (namely ApCPR1, ApCPR2, and ApCPR3), and their coding regions were cloned. They varied from 62% to 70% identities to each other at the amino acid sequence level. ApCPR1 belongs to Class I of dicotyledonous CPR while both ApCPR2 and ApCPR3 are grouped to Class II. The recombinant enzymes ApCPR1 and ApCPR2 reduced cytochrome c and ferricyanide in an NADPH-dependent manner. In yeast, they supported the activity of CYP76AH1, a ferruginol-forming enzyme. However, ApCPR3 did not show any enzymatic activities either in vitro or in vivo. Quantitative real-time PCR analysis showed that both ApCPR1 and ApCPR2 expressed in all tissues examined, but ApCPR2 showed higher expression in leaves. Expression of ApCPR2 was inducible by MeJA and its pattern matched with andrographolide accumulation. Present investigation suggested ApCPR2 involves in the biosynthesis of secondary metabolites including andrographolide. Copyright © 2017. Published by Elsevier B.V.

  10. Involvement of an ent-copalyl diphosphate synthase in tissue-specific accumulation of specialized diterpenes in Andrographis paniculata.

    Science.gov (United States)

    Misra, Rajesh Chandra; Garg, Anchal; Roy, Sudeep; Chanotiya, Chandan Singh; Vasudev, Prema G; Ghosh, Sumit

    2015-11-01

    Ent-labdane-related diterpene (ent-LRD) specialized (i.e. secondary) metabolites of the medicinal plant kalmegh (Andrographis paniculata) have long been known for several pharmacological activities. However, our understanding of the ent-LRD biosynthetic pathway has remained largely incomplete. Since ent-LRDs accumulate in leaves, we carried out a comparative transcriptional analysis using leaf and root tissues, and identified 389 differentially expressed transcripts, including 223 transcripts that were preferentially expressed in leaf tissue. Analysis of the transcripts revealed various specialized metabolic pathways, including transcripts of the ent-LRD biosynthetic pathway. Two class II diterpene synthases (ApCPS1 and ApCPS2) along with one (ApCPS1') and two (ApCPS2' and ApCPS2″) transcriptional variants that were the outcomes of alternative splicing of the precursor mRNA and alternative transcriptional termination, respectively, were identified. ApCPS1 and ApCPS2 encode for 832- and 817-amino acids proteins, respectively, and are phylogenetically related to the dicotyledons ent-copalyl diphosphate synthases (ent-CPSs). The spatio-temporal patterns of ent-LRD metabolites accumulation and gene expression suggested a likely role for ApCPS1 in general (i.e. primary) metabolism, perhaps by providing precursor for the biosynthesis of phytohormone gibberellin (GA). However, ApCPS2 is potentially involved in tissue-specific accumulation of ent-LRD specialized metabolites. Bacterially expressed recombinant ApCPS2 catalyzed the conversion of (E,E,E)-geranylgeranyl diphosphate (GGPP), the general precursor of diterpenes to ent-copalyl diphosphate (ent-CPP), the precursor of ent-LRDs. Taken together, these results advance our understanding of the tissue-specific accumulation of specialized ent-LRDs of medicinal importance. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  11. Adaptation of indigenous sheep, goats and camels in harsh grazing conditions

    International Nuclear Information System (INIS)

    Engelhardt, W. von; Weyreter, H.; Heller, R.; Lechner, M.; Schultka, W.

    1986-01-01

    Microbial breakdown of cellulose is a rather slow process. Therefore the retention time of digesta and the volume of the fermentation chamber are factors limiting the quantity of fibrous diets that can be digested. Indigenous ruminants can generally adapt to harsh grazing conditions better than conventional breeds. Unexpectedly high rumen volumes were reported in a number of indigenous ruminants. In studies reported in this paper, Heidschnucken, an indigenous breed of sheep in the heather region of Northern Germany, were able to increase their rumen volume from 14% to 22% of body weight during adaptation to a low quality fibrous diet. Heidschnucken did not lose significant body weight, whereas Blackface sheep lost 20% and failed to adapt the rumen volume. Rumen volume of indigenous sheep and goats in Northern Kenya was 20% of body weight while grazing in the thornbush savannah during the dry season, compared with 9-12% while kept indoors on a hay-concentrate diet. Mean retention time of particles in the total gastrointestinal tract of goats and sheep in Kenya was 38 h and 46 h respectively. In the experiment with Heidschnucken, these sheep increased the retention time of particles to 71 h on a straw diet, while Blackface sheep retained particles 58 h. Dietary preference and feed intake have been studied in indigenous sheep and goats in Kenya at seasonal pasture conditions in the thornbush savannah. Goats have a higher preference to dicotyledon species (92-97%) than sheep, who are less selective grazers. The feeding behaviour of indigenous sheep and goats was complementary rather than competitive. Feeding observations indicate that this is also the case when cattle (grazers) and camels (browsers) are included in such a comparison. (author)

  12. Experimentation of grapevine cultivation in organic system, on five different Romanian vineyards

    Directory of Open Access Journals (Sweden)

    Aurora Maria Ranca

    2016-11-01

    Full Text Available In five Romanian vineyards, in 2013-2014 period was experimented organic system growing on  grape varieties for wine representative for each area, here are applied organic growing technology in parallel with the conventional (control. White varieties studied are: Chardonnay (Murfatlar and Valea Calugareasca, Sauvignon blanc and Muscat Ottonel(Tarnave, Feteasca regala (Tarnave, Bujoru and Copou-Iasi. Red varieties are Cabernet Sauvignon (Murfatlar and Valea Calugareasca and Merlot (Bujoru. Concerning evolution of main climatic factors for the years 2013-2014 it is show that the annual average air temperature increase compared with the average of the years 1991-2010; is observed an increasing in mean annual temperature, mean temperature during the growing season and the value of sum of sunshine hours. The water regime was kept constant, registering values close to the annual average, both during the growing season and at entire year. The weeds spectrum is represented both by dicotyledonous as knotweed (Polygonum aviculare, Veronica (Stellaria media, news (Amaranthus retroflexus, bindweed (Convolvurus arvensis and monocotyledonous as grass thick (Cynodon dactylon. Concerning the phytosanitary status, at Murfatlar were registered problems with oidium attack, with all main disease at Dealu Mare and with downy mildew at Bujoru. In all areas the pest has been found are: grape mouth (Lobesia botrana and spiders (Tetranichus sp.. Schemes of treatments focused generally on substances bassed on copper and sulfur to combat diseases and for pests have been used pheromonal traps or other certified organic products. The grapes harvest was lower in organic plots with till 25%; their quality being close at both growing variants.

  13. Molecular and phenotypic characterization of transgenic soybean expressing the Arabidopsis ferric chelate reductase gene, FRO2.

    Science.gov (United States)

    Vasconcelos, Marta; Eckert, Helene; Arahana, Venancio; Graef, George; Grusak, Michael A; Clemente, Tom

    2006-10-01

    Soybean (Glycine max Merr.) production is reduced under iron-limiting calcareous soils throughout the upper Midwest regions of the US. Like other dicotyledonous plants, soybean responds to iron-limiting environments by induction of an active proton pump, a ferric iron reductase and an iron transporter. Here we demonstrate that heterologous expression of the Arabidopsis thaliana ferric chelate reductase gene, FRO2, in transgenic soybean significantly enhances Fe(+3) reduction in roots and leaves. Root ferric reductase activity was up to tenfold higher in transgenic plants and was not subjected to post-transcriptional regulation. In leaves, reductase activity was threefold higher in the transgenic plants when compared to control. The enhanced ferric reductase activity led to reduced chlorosis, increased chlorophyll concentration and a lessening in biomass loss in the transgenic events between Fe treatments as compared to control plants grown under hydroponics that mimicked Fe-sufficient and Fe-deficient soil environments. However, the data indicate that constitutive FRO2 expression under non-iron stress conditions may lead to a decrease in plant productivity as reflected by reduced biomass accumulation in the transgenic events under non-iron stress conditions. When grown at Fe(III)-EDDHA levels greater than 10 microM, iron concentration in the shoots of transgenic plants was significantly higher than control. The same observation was found in the roots in plants grown at iron levels higher than 32 microM Fe(III)-EDDHA. These results suggest that heterologous expression of an iron chelate reductase in soybean can provide a route to alleviate iron deficiency chlorosis.

  14. The effect of tributyltin-oxide on earthworms, springtails, and plants in artificial and natural soils.

    Science.gov (United States)

    Römbke, J; Jänsch, S; Junker, T; Pohl, B; Scheffczyk, A; Schallnass, H-J

    2007-05-01

    Chemical bioavailability in Organisation for Economic Co-operation and Development (OECD) artificial soil can contrast with bioavailability in natural soils and produce ecotoxicologic benchmarks that are not representative of species' exposure conditions in the field. Initially, reproduction and growth of earthworm and Collembolan species, and early seedling growth of a dicotyledonous plant species, in nine natural soils (with a wide range of physicochemical properties) and in OECD soil were evaluated. Soils that supported reproduction and growth of the test species were then used to investigate the toxicity of tributyltin-oxide (TBT-O). Natural soils caused greater toxicity of TBT-O to earthworms (EC(50) values varied from 0.5 to 4.7 mg/kg soil dry weight [dw]) compared with toxicity in OECD soil (EC(50) = 13.4 mg/kg dw). Collembolans were less sensitive to TBT-O than earthworms in natural soils, with EC(50) values ranging from 23.4 to 177.8 mg/kg dw. In contrast, the toxicity of TBT-O to collembolans in OECD soil (EC(50) = 104.0 mg/kg dw) was within the range of EC(50) values in natural soils. Phytotoxicity tests revealed even greater difference between the effects in natural soils (EC(50) values ranged from 10.7 to 189.2 mg/kg dw) and in OECD soil (EC(50) = 535.5 mg/kg dw) compared with results of the earthworm tests. Studies also showed that EC(50) values were a more robust end point compared with EC(10) values based on comparisons of coefficients of variation. These results show that toxicity testing should include studies with natural soils in addition to OECD soil to better reflect exposure conditions in the field.

  15. Organização estrutural da casca de Persea major Kopp (Lauraceae Structural organization of Persea major Kopp bark (Lauraceae

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    Leila Teresinha Maranho

    2009-06-01

    Full Text Available O presente estudo foi desenvolvido com o objetivo de contribuir ao conhecimento da estrutura da casca de Persea major Kopp (Lauraceae, espécie nativa da América do Sul. No Brasil, é conhecida, popularmente, como "pau de andrade" e utilizada na cultura tradicional na cicatrização dos ferimentos. A análise da casca foi feita usando microscopia de óptica. A casca se distingue, principalmente, pelo tipo e distribuição dos tecidos esclerenquimáticos e a presença de células oleíferas e mucilaginosas. As características encontradas na estrutura da casca desta espécie mostram grande importância para a identificação e servem como parâmetros no controle de qualidade. Estas células oleíferas e mucilaginosas com uma distribuição restrita nas dicotiledôneas constituem uma característica taxonômica e diagnóstica particularmente valiosa.The study was undertaken to increase our knowledge of bark structure of Persea major Kopp (Lauraceae, a native specie from South America. In Brazil, it is known as "pau de andrade" and is used by traditional cultures to heal injuries. This analysis was done by light microscopy. The bark is distinguished mainly by the type and distribution of sclerenchymatic tissues, and the presence of oil and mucilage cells. The characteristics found in the bark anatomy of this species are of great importance for identification purposes and as parameters in quality control. These oil and mucilage cells have a restricted distribution in the dicotyledons and constitute a particularly valuable taxonomic and diagnostic feature.

  16. The Defense-Related Isoleucic Acid Differentially Accumulates in Arabidopsis Among Branched-Chain Amino Acid-Related 2-Hydroxy Carboxylic Acids

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    Rafał P. Maksym

    2018-06-01

    Full Text Available The branched-chain amino acid (BCAA related 2-hydroxy carboxylic acid isoleucic acid (ILA enhances salicylic acid-mediated pathogen defense in Arabidopsis thaliana. ILA has been identified in A. thaliana as its glucose conjugate correlated with the activity of the small-molecule glucosyltransferase UGT76B1, which can glucosylate both salicylic acid and ILA in vitro. However, endogenous levels of the ILA aglycon have not yet been determined in planta. To quantify ILA as well as the related leucic acid (LA and valic acid (VA in plant extracts, a sensitive method based on the derivatization of small carboxylic acids by silylation and gas chromatography–mass spectrometric analysis was developed. ILA was present in all species tested including several monocotyledonous and dicotyledonous plants as well as broadleaf and coniferous trees, whereas LA and VA were only detectable in a few species. In A. thaliana both ILA and LA were found. However, their levels varied during plant growth and in root vs. leaves. ILA levels were higher in 2-week-old leaves and decreased in older plants, whereas LA exhibited a reverted accumulation pattern. Roots displayed higher ILA and LA levels compared to leaves. ILA was inversely related to UGT76B1 expression level indicating that UGT76B1 glucosylates ILA in planta. In contrast, LA was not affected by the expression of UGT76B1. To address the relation of both 2-hydroxy acids to plant defense, we studied ILA and LA levels upon infection by Pseudomonas syringae. LA abundance remained unaffected, whereas ILA was reduced. This change suggests an ILA-related attenuation of the salicylic acid response. Collectively, the BCAA-related ILA and LA differentially accumulated in Arabidopsis, supporting a specific role and regulation of the defense-modulating small-molecule ILA among these 2-hydroxy acids. The new sensitive method will pave the way to further unravel their role in plants.

  17. Overexpression of sweet sorghum cryptochrome 1a confers hypersensitivity to blue light, abscisic acid and salinity in Arabidopsis.

    Science.gov (United States)

    Zhou, Tingting; Meng, Lingyang; Ma, Yue; Liu, Qing; Zhang, Yunyun; Yang, Zhenming; Yang, Deguang; Bian, Mingdi

    2018-02-01

    This work provides the bioinformatics, expression pattern and functional analyses of cryptochrome 1a from sweet sorghum (SbCRY1a), together with an exploration of the signaling mechanism mediated by SbCRY1a. Sweet sorghum [Sorghum bicolor (L.) Moench] is considered to be an ideal candidate for biofuel production due to its high efficiency of photosynthesis and the ability to maintain yield under harsh environmental conditions. Blue light receptor cryptochromes regulate multiple aspects of plant growth and development. Here, we reported the function and signal mechanism of sweet sorghum cryptochrome 1a (SbCRY1a) to explore its potential for genetic improvement of sweet sorghum varieties. SbCRY1a transcripts experienced almost 24 h diurnal cycling; however, its protein abundance showed no oscillation. Overexpression of SbCRY1a in Arabidopsis rescued the phenotype of cry1 mutant in a blue light-specific manner and regulated HY5 accumulation under blue light. SbCRY1a protein was present in both nucleus and cytoplasm. The photoexcited SbCRY1a interacted directly with a putative RING E3 ubiquitin ligase constitutive photomorphogenesis 1 (COP1) from sweet sorghum (SbCOP1) instead of SbSPA1 to suppress SbCOP1-SbHY5 interaction responding to blue light. These observations indicate that the function and signaling mechanism of cryptochromes are basically conservative between monocotyledons and dicotyledons. Moreover, SbCRY1a-overexpressed transgenic Arabidopsis showed oversensitive to abscisic acid (ABA) and salinity. The ABA-responsive gene ABI5 was up-regulated evidently in SbCRY1a transgenic lines, suggesting that SbCRY1a might regulate ABA signaling through the HY5-ABI5 regulon.

  18. Weed infestation of winter wheat (Triticum aestivum L. under the conditions of application of some retardants

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    Elżbieta Harasim

    2013-07-01

    Full Text Available A field study was conducted in the period 2004–2007 on grey-brown podzolic soil (sandy. This study analysed the relationship between the use of stem shortening in cereals by means of retardants with the following active substances: chlormequat chloride (Antywylegacz Płynny 675 SL, trinexapac-ethyl (Moddus 250 EC, chlormequat chloride + ethephon (Cecefon 465 SL, and weed infestation. The retardants were applied at the 1st node stage (BBCH 31 – Antywylegacz Płynny 675 SL and the 2nd node stage of winter wheat (BBCH 32 – Moddus 250 EC and Cecefon 465 SL, together with the adjuvant Atpolan 80 EC (75% of SN 200 mineral oil or without the adjuvant. Winter wheat, cv. 'Muza', was grown after vetch grown for seed. The whole experiment was sprayed with the herbicides Apyros 75 WG and Starane 250 EC at the full tillering stage (BBCH 29–30. Plots where no growth regulators were used were the control treatment. Weed density and biomass showed great variation between years. In the winter wheat crop, Veronica persica, Viola arvensis, Veronica arvensis, Capsella bursa-pastoris,and Chenopodium album dominated in the dicotyledonous class, whereas Apera spica-venti, Echinochloa crus-galli,and Elymus repens were predominant among monocotyledonous plants. The level of weed infestation of the winter wheat crop, as measured by the number and air-dry weight of weeds, was significantly differentiated by years and retardants used as well as by interactions of these factors. The adjuvant Atpolan 80 EC did not have a significant effect on the above-mentioned weed infestation parameters. .

  19. Using a periclinal chimera to unravel layer-specific gene expression in plants.

    Science.gov (United States)

    Filippis, Ioannis; Lopez-Cobollo, Rosa; Abbott, James; Butcher, Sarah; Bishop, Gerard J

    2013-09-01

    Plant organs are made from multiple cell types, and defining the expression level of a gene in any one cell or group of cells from a complex mixture is difficult. Dicotyledonous plants normally have three distinct layers of cells, L1, L2 and L3. Layer L1 is the single layer of cells making up the epidermis, layer L2 the single cell sub-epidermal layer and layer L3 constitutes the rest of the internal cells. Here we show how it is possible to harvest an organ and characterise the level of layer-specific expression by using a periclinal chimera that has its L1 layer from Solanum pennellii and its L2 and L3 layers from Solanum lycopersicum. This is possible by measuring the level of the frequency of species-specific transcripts. RNA-seq analysis enabled the genome-wide assessment of whether a gene is expressed in the L1 or L2/L3 layers. From 13 277 genes that are expressed in both the chimera and the parental lines and with at least one polymorphism between the parental alleles, we identified 382 genes that are preferentially expressed in L1 in contrast to 1159 genes in L2/L3. Gene ontology analysis shows that many genes preferentially expressed in L1 are involved in cutin and wax biosynthesis, whereas numerous genes that are preferentially expressed in L2/L3 tissue are associated with chloroplastic processes. These data indicate the use of such chimeras and provide detailed information on the level of layer-specific expression of genes. © 2013 East Malling Research The Plant Journal © 2013 John Wiley & Sons Ltd.

  20. Evaluation of Medical Metabolites in Boraginaceae Family

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    Golnaz Taravati

    2014-05-01

    Full Text Available Boraginaceae family is known as a medicinal plant classified in dicotyledons.  It is originated from Asia (Middle East. The aim of this study was to evaluate ingredient between 4 species of Boraginaceae family based on physiological & phytochemical traits as well as seed fatty acid contents.  4 species (E. russicum, E. italicum, E. amoenum, and B. officinalis were evaluated carefully. All seeds were cultivated in identical conditions in a greenhouse in Tehran to assesse parameters such as tannins, phenols, anthocyanin, total protein, seed oil contents, Superoxide Dismutase (SOD, and Catalase (CAT activity. Analysis of oil from seeds of EchiumL. determined 7 different fatty acids including Linolenic acid (35.1%, Linoleic acid (16.8%, Oleic acid (16.6% and Arachidonic acid (15.5% as major fatty acids, while stearic acid (4.42%, Palmitic acid (6.22%, Gama-Linolenic acid (6.04% were the minor fatty acids extracted from seeds. Low protein content was observed in E. russicum(70 mg/g and maximum level of protein was in B. officinalis(91mg/g. E. amoenum had maximum phenols (38mg/g whereas E. russicum had minimum (26 mg/g. For total phenol, B. officinalis had maxium phenols (8.1mg/g whereas E. italicum had minimum (3.9mg/g. Anthocyanins: E. russicum had maximum anthocyanins (65 mg/g whereas B. officinalis had minimum (41 mg/g. In conclusion, it can be said that different species had different amounts of secondary metabolites so that no regular relation would be detected among plant species that we studied

  1. Rapid in situ detection of alkaloids in plant tissue under ambient conditions using desorption electrospray ionization.

    Science.gov (United States)

    Talaty, Nari; Takáts, Zoltán; Cooks, R Graham

    2005-12-01

    Desorption electrospray ionization (DESI) mass spectrometry is applied to the in situ detection of alkaloids in the tissue of poison hemlock (Conium maculatum), jimsonweed (Datura stramonium) and deadly nightshade (Atropa belladonna). The experiment is carried out by electrospraying micro-droplets of solvent onto native or freshly-cut plant tissue surfaces. No sample preparation is required and the mass spectra are recorded under ambient conditions, in times of a few seconds. The impact of the sprayed droplets on the surface produces gaseous ions from organic compounds originally present in the plant tissue. The effects of operating parameters, including the electrospray high voltage, heated capillary temperature, the solvent infusion rate and the carrier gas pressure on analytical performance are evaluated and optimized. Different types of plant material are analyzed including seeds, stems, leaves, roots and flowers. All the previously reported alkaloids have been detected in C. maculatum, while fifteen out of nineteen known alkaloids for D. stramonium and the principal alkaloids of A. belladonna were also identified. All identifications were confirmed by tandem mass spectrometry. Results obtained show similar mass spectra, number of alkaloids, and signal intensities to those obtained when extraction and separation processes are performed prior to mass spectrometric analysis. Evidence is provided that DESI ionization occurs by both a gas-phase ionization process and by a droplet pick-up mechanism. Quantitative precision of DESI is compared with conventional electrospray ionization mass spectrometry (after sample workup) and the RSD values for the same set of 25 dicotyledonous C. maculatum seeds (one half of each seed analyzed by ESI and the other by DESI) are 9.8% and 5.2%, respectively.

  2. In Vitro Screening for the Tumoricidal Properties of International Medicinal Herbs

    Science.gov (United States)

    Mazzio, Elizabeth A.; Soliman, Karam F. A.

    2009-01-01

    There is growing use of anticancer complementary and alternative medicines (CAMs) worldwide. The purpose of the current study is to assess a sizeable variety of natural and plant sources of diverse origin, to ascertain prospective research directives for cancer treatment and potential new chemotherapy drug sources. In this study, 374 natural extracts (10 μg/mL-5 mg/mL) were evaluated for dose-dependent tumoricidal effects using immortal neuroblastoma of spontaneous malignant origin. The findings indicate no pattern of tumoricidal effects by diverse plants with similar families/genus under the classes Pinopsida, Equisetopsida, Lycopodiosida, Filicosida, Liliopsida Monocotyledons or Magnoliopsida Dicotyledons. The results indicate that many of the most commonly used CAMs exhibited relatively weak tumoricidal effects including cats claw, astragalus, ginseng, echinacea, mistletoe, milk thistle, slippery elm, cayenne, chamomile, don quai, meadowsweet, motherwort and shepherd's purse. The data demonstrate that the most potent plant extracts were randomly dispersed within the plantae kingdom (LC50 = 31-490 μg/mL) in order of the lowest LC50 Dioscorea villosa (Dioscoreaceae) > Sanguinaria canadensis (Papaveraceae) > Dipsacus asper (Dipsacaceae) > Populus balsamifera (Salicaceae) > Boswellia carteri (Burseraceae) > Cyamopsis psoralioides (Fabaceae) > Rhamnus cathartica (Rhamnaceae) > Larrea tridentate (Zygophyllaceae) > Dichroa febrifuga (Hydrangeaceae) > Batschia canescens (Boraginaceae) > Kochia scoparia (Chenopodiaceae) > Solanum xanthocarpum (Solanaceae) > Opoponax chironium (Umbelliferae) > Caulophyllum thalictroides (Berberidaceae) > Dryopteris crassirhizoma (Dryopteridaceae) > Garcinia cambogia (Clusiaceae) > Vitex agnus-castus (Verbenaceae) > Calamus draco (Arecaceae). These findings show tumoricidal effect by extracts of wild yam root, bloodroot, teasel root, bakuchi seed, dichroa root, kanta kari, garcinia fruit, mace, dragons blood and the biblically referenced

  3. Cloning, Expression Profiling and Functional Analysis of CnHMGS, a Gene Encoding 3-hydroxy-3-Methylglutaryl Coenzyme A Synthase from Chamaemelum nobile

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    Shuiyuan Cheng

    2016-03-01

    Full Text Available Roman chamomile (Chamaemelum nobile L. is renowned for its production of essential oils, which major components are sesquiterpenoids. As the important enzyme in the sesquiterpenoid biosynthesis pathway, 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMGS catalyze the crucial step in the mevalonate pathway in plants. To isolate and identify the functional genes involved in the sesquiterpene biosynthesis of C. nobile L., a HMGS gene designated as CnHMGS (GenBank Accession No. KU529969 was cloned from C. nobile. The cDNA sequence of CnHMGS contained a 1377 bp open reading frame encoding a 458-amino-acid protein. The sequence of the CnHMGS protein was highly homologous to those of HMGS proteins from other plant species. Phylogenetic tree analysis revealed that CnHMGS clustered with the HMGS of Asteraceae in the dicotyledon clade. Further functional complementation of CnHMGS in the mutant yeast strain YSC6274 lacking HMGS activity demonstrated that the cloned CnHMGS cDNA encodes a functional HMGS. Transcript profile analysis indicated that CnHMGS was preferentially expressed in flowers and roots of C. nobile. The expression of CnHMGS could be upregulated by exogenous elicitors, including methyl jasmonate and salicylic acid, suggesting that CnHMGS was elicitor-responsive. The characterization and expression analysis of CnHMGS is helpful to understand the biosynthesis of sesquiterpenoid in C. nobile at the molecular level and also provides molecular wealth for the biotechnological improvement of this important medicinal plant.

  4. Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

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    Wu Jiajie

    2010-10-01

    Full Text Available Abstract Background Glycoside hydrolases cleave the bond between a carbohydrate and another carbohydrate, a protein, lipid or other moiety. Genes encoding glycoside hydrolases are found in a wide range of organisms, from archea to animals, and are relatively abundant in plant genomes. In plants, these enzymes are involved in diverse processes, including starch metabolism, defense, and cell-wall remodeling. Glycoside hydrolase genes have been previously cataloged for Oryza sativa (rice, the model dicotyledonous plant Arabidopsis thaliana, and the fast-growing tree Populus trichocarpa (poplar. To improve our understanding of glycoside hydrolases in plants generally and in grasses specifically, we annotated the glycoside hydrolase genes in the grasses Brachypodium distachyon (an emerging monocotyledonous model and Sorghum bicolor (sorghum. We then compared the glycoside hydrolases across species, at the levels of the whole genome and individual glycoside hydrolase families. Results We identified 356 glycoside hydrolase genes in Brachypodium and 404 in sorghum. The corresponding proteins fell into the same 34 families that are represented in rice, Arabidopsis, and poplar, helping to define a glycoside hydrolase family profile which may be common to flowering plants. For several glycoside hydrolase familes (GH5, GH13, GH18, GH19, GH28, and GH51, we present a detailed literature review together with an examination of the family structures. This analysis of individual families revealed both similarities and distinctions between monocots and eudicots, as well as between species. Shared evolutionary histories appear to be modified by lineage-specific expansions or deletions. Within GH families, the Brachypodium and sorghum proteins generally cluster with those from other monocots. Conclusions This work provides the foundation for further comparative and functional analyses of plant glycoside hydrolases. Defining the Brachypodium glycoside hydrolases sets

  5. The Cer-cqu gene cluster determines three key players in a β-diketone synthase polyketide pathway synthesizing aliphatics in epicuticular waxes.

    Science.gov (United States)

    Schneider, Lizette M; Adamski, Nikolai M; Christensen, Caspar Elo; Stuart, David B; Vautrin, Sonia; Hansson, Mats; Uauy, Cristobal; von Wettstein-Knowles, Penny

    2016-03-09

    Aliphatic compounds on plant surfaces, called epicuticular waxes, are the first line of defense against pathogens and pests, contribute to reducing water loss and determine other important phenotypes. Aliphatics can form crystals affecting light refraction, resulting in a color change and allowing identification of mutants in their synthesis or transport. The present study discloses three such Eceriferum (cer) genes in barley - Cer-c, Cer-q and Cer-u - known to be tightly linked and functioning in a biochemical pathway forming dominating amounts of β-diketone and hydroxy-β-diketones plus some esterified alkan-2-ols. These aliphatics are present in many Triticeae as well as dicotyledons such as Eucalyptus and Dianthus. Recently developed genomic resources and mapping populations in barley defined these genes to a small region on chromosome arm 2HS. Exploiting Cer-c and -u potential functions pinpointed five candidates, of which three were missing in apparent cer-cqu triple mutants. Sequencing more than 50 independent mutants for each gene confirmed their identification. Cer-c is a chalcone synthase-like polyketide synthase, designated diketone synthase (DKS), Cer-q is a lipase/carboxyl transferase and Cer-u is a P450 enzyme. All were highly expressed in pertinent leaf sheath tissue of wild type. A physical map revealed the order Cer-c, Cer-u, Cer-q with the flanking genes 101kb apart, confirming they are a gene cluster, Cer-cqu. Homology-based modeling suggests that many of the mutant alleles affect overall protein structure or specific active site residues. The rich diversity of identified mutations will facilitate future studies of three key enzymes involved in synthesis of plant apoplast waxes. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  6. Development of a testing system for the documentation and evaluation of the weed-suppressing ability of blue lupins

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    Böhm, Herwart

    2016-02-01

    Full Text Available Within the framework of a joint research project for breeding advancement of blue and yellow lupins, which is being conducted in cooperation with the Julius Kühn-Institute, Institute for Breeding Research on Agricultural Crops (coordinator, Saatzucht Steinach and the IPK Gatersleben, in a sub-project at the Thünen-Institute of Organic Farming 1. a test system for detection and assessment of weed-suppressing effect of blue lupins will be developed, and 2. this test system will be tested to pre-breeding lines of blue lupin. In the first year of the project, plot trials were conducted in 3-fold field repetition with two phenological widely differing varieties (cv. Boruta [terminated type], cv. Boregine [branched type] in combination with selected partners with four different seed rates. As partners, monocotyledonous species (e.g., cereals and dicotyledonous species (false flax or resp., a mixture of oil seed rape, phacelia and buckwheat, are used. Twice during the growing season and at harvest, the aboveground biomass, separated by lupin, partners and weeds, were recorded. The results of the first project year show that all the partner plants which should serve as artificial weeds were successfully established. False flax leads to the strongest effect on the development of lupins, which showed the lowest biomass production in these variants. In comparison to the sown partners, the false flax variants also showed the highest biomass production, while the lowest biomass production was recorded for the natural weeds occurring at the site. The species mixture of oil seed rape, phacelia and buckwheat, however, led to the lowest biomass production; contemporaneously the biomass production of lupins in these variants was only affected slightly. Comparing the two cultivated lupin varieties, Boruta showed a better weed suppressive effect.

  7. Effects of spray drift of glyphosate on nontarget terrestrial plants-A critical review.

    Science.gov (United States)

    Cederlund, Harald

    2017-11-01

    Glyphosate is a widely used broad-spectrum postemergent herbicide used for weed control in both agricultural and nonagricultural settings. Spray drift of glyphosate can pose a risk to nontarget terrestrial plants and plant communities outside the intended area of application, but the lack of a well-established predicted-no-effect drift rate makes properly assessing such risk difficult. For this reason, a literature review and meta-analysis was carried out with the aim to determine the level of drift that is likely to cause harm to plants and to explore what spray-reducing targets would be sufficiently protective. No-observed-adverse effect rates, lowest-observed-adverse effect rates, and effect rates giving 10, 25, and 50% effects were extracted from a total of 39 different publications. The data were combined per species, and species sensitivity distributions were constructed and fitted with a log-logistic model to assess protectiveness. No systematic differences were detected between the responses of monocotyledons or dicotyledons, but wild plants were found to be generally less sensitive to glyphosate drift than domesticated plants. The results indicate that restricting spray drift to a level below 5 g a.e./ha would protect approximately 95% of all higher plant species against minor adverse effects of glyphosate drift and that rates below 1 to 2 g a.e./ha would be almost completely protective. No studies were encountered that evaluated effects of spray drift against nonvascular plants, and therefore, the conclusions are only valid for vascular plants. Environ Toxicol Chem 2017;36:2879-2886. © 2017 SETAC. © 2017 SETAC.

  8. Impact of Soil Warming on the Plant Metabolome of Icelandic Grasslands

    Science.gov (United States)

    Gargallo-Garriga, Albert; Ayala-Roque, Marta; Granda, Victor; Sigurdsson, Bjarni D.; Leblans, Niki I. W.; Oravec, Michal; Urban, Otmar; Janssens, Ivan A.

    2017-01-01

    Climate change is stronger at high than at temperate and tropical latitudes. The natural geothermal conditions in southern Iceland provide an opportunity to study the impact of warming on plants, because of the geothermal bedrock channels that induce stable gradients of soil temperature. We studied two valleys, one where such gradients have been present for centuries (long-term treatment), and another where new gradients were created in 2008 after a shallow crustal earthquake (short-term treatment). We studied the impact of soil warming (0 to +15 °C) on the foliar metabolomes of two common plant species of high northern latitudes: Agrostis capillaris, a monocotyledon grass; and Ranunculus acris, a dicotyledonous herb, and evaluated the dependence of shifts in their metabolomes on the length of the warming treatment. The two species responded differently to warming, depending on the length of exposure. The grass metabolome clearly shifted at the site of long-term warming, but the herb metabolome did not. The main up-regulated compounds at the highest temperatures at the long-term site were saccharides and amino acids, both involved in heat-shock metabolic pathways. Moreover, some secondary metabolites, such as phenolic acids and terpenes, associated with a wide array of stresses, were also up-regulated. Most current climatic models predict an increase in annual average temperature between 2–8 °C over land masses in the Arctic towards the end of this century. The metabolomes of A. capillaris and R. acris shifted abruptly and nonlinearly to soil warming >5 °C above the control temperature for the coming decades. These results thus suggest that a slight warming increase may not imply substantial changes in plant function, but if the temperature rises more than 5 °C, warming may end up triggering metabolic pathways associated with heat stress in some plant species currently dominant in this region. PMID:28832555

  9. Genomic Organization, Phylogenetic Comparison and Differential Expression of the SBP-Box Family Genes in Grape

    Science.gov (United States)

    Hou, Hongmin; Li, Jun; Gao, Min; Singer, Stacy D.; Wang, Hao; Mao, Linyong; Fei, Zhangjun; Wang, Xiping

    2013-01-01

    Background The SBP-box gene family is specific to plants and encodes a class of zinc finger-containing transcription factors with a broad range of functions. Although SBP-box genes have been identified in numerous plants including green algae, moss, silver birch, snapdragon, Arabidopsis, rice and maize, there is little information concerning SBP-box genes, or the corresponding miR156/157, function in grapevine. Methodology/Principal Findings Eighteen SBP-box gene family members were identified in Vitis vinifera, twelve of which bore sequences that were complementary to miRNA156/157. Phylogenetic reconstruction demonstrated that plant SBP-domain proteins could be classified into seven subgroups, with the V. vinifera SBP-domain proteins being more closely related to SBP-domain proteins from dicotyledonous angiosperms than those from monocotyledonous angiosperms. In addition, synteny analysis between grape and Arabidopsis demonstrated that homologs of several grape SBP genes were found in corresponding syntenic blocks of Arabidopsis. Expression analysis of the grape SBP-box genes in various organs and at different stages of fruit development in V. quinquangularis ‘Shang-24’ revealed distinct spatiotemporal patterns. While the majority of the grape SBP-box genes lacking a miR156/157 target site were expressed ubiquitously and constitutively, most genes bearing a miR156/157 target site exhibited distinct expression patterns, possibly due to the inhibitory role of the microRNA. Furthermore, microarray data mining and quantitative real-time RT-PCR analysis identified several grape SBP-box genes that are potentially involved in the defense against biotic and abiotic stresses. Conclusion The results presented here provide a further understanding of SBP-box gene function in plants, and yields additional insights into the mechanism of stress management in grape, which may have important implications for the future success of this crop. PMID:23527172

  10. Genome-Wide Analysis of the AP2/ERF Family in Eucalyptus grandis: An Intriguing Over-Representation of Stress-Responsive DREB1/CBF Genes

    Science.gov (United States)

    SanClemente, H.; Mounet, F.; Dunand, C.; Marque, G.; Marque, C.; Teulières, C.

    2015-01-01

    Background The AP2/ERF family includes a large number of developmentally and physiologically important transcription factors sharing an AP2 DNA-binding domain. Among them DREB1/CBF and DREB2 factors are known as master regulators respectively of cold and heat/osmotic stress responses. Experimental Approaches The manual annotation of AP2/ERF family from Eucalyptus grandis, Malus, Populus and Vitis genomes allowed a complete phylogenetic study for comparing the structure of this family in woody species and the model Arabidopsis thaliana. Expression profiles of the whole groups of EgrDREB1 and EgrDREB2 were investigated through RNAseq database survey and RT-qPCR analyses. Results The structure and the size of the AP2/ERF family show a global conservation for the plant species under comparison. In addition to an expansion of the ERF subfamily, the tree genomes mainly differ with respect to the group representation within the subfamilies. With regard to the E. grandis DREB subfamily, an obvious feature is the presence of 17 DREB1/CBF genes, the maximum reported to date for dicotyledons. In contrast, only six DREB2 have been identified, which is similar to the other plants species under study, except for Malus. All the DREB1/CBF and DREB2 genes from E. grandis are expressed in at least one condition and all are heat-responsive. Regulation by cold and drought depends on the genes but is not specific of one group; DREB1/CBF group is more cold-inducible than DREB2 which is mainly drought responsive. Conclusion These features suggest that the dramatic expansion of the DREB1/CBF group might be related to the adaptation of this evergreen tree to climate changes when it expanded in Australia. PMID:25849589

  11. Investigation of weed species diversity and community structure in saffron fields of Khorasan

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    Surur Khorramdel

    2017-09-01

    Full Text Available Weedy flora of agroecosystems is composed of many species that have evolved in response to cropping system practices by occupying the niches left available in agroecosystems. In order to study weed species diversity and community structure in the saffron fields of Khorasan province, a survey trial was carried out in seven counties (including Mashhad, Neyshabur, Birjandn, Ghaen, Gonabad, Torbat-e Jam and Torbat-e Heydari during 2014 and 2015 from vegetative growth, dormant to flowering stages of saffron randomly dropped 1×1 m2 quadrates in 50 fields based on a systematic method as W pattern. The counties were clustered by the hierarchical complete linkage method based on Euclidean. Biodiversity indices such as stability coefficient, Simpson, Shannon–Wiener, Margalef and Menhinick were computed. The results indicated that the dominant weeds in saffron fields belong to 19 families and 50 species. Poaceae, Brassicaceae, Asteraceae and Fabaceae were dominant families with 11, 9, 8 and 6 species, respectively. The majority of weed species were dicotyledonous, C3, noxious and annual plants. The highest stability coefficients in the stages of growth of saffron were calculated in Alhagi camelorum, Avena fatua and Achillea millefolium to be 30.81, 24.11 and 12.14, respectively. All weed species except for Alhagi camelorum (sustainable species and Avena fatua (temporary species were recognized as causal species. The maximum diversity indices for weed species were recorded at the vegetative phase of saffron. Correlation coefficient between weed density and yield loss of saffron was computed as R2=0.98. Based on diversity indices for weed species, different counties were clustered in three groups at 75% similarity level.

  12. Sunflower (Helianthus annuus) fatty acid synthase complex: enoyl-[acyl carrier protein]-reductase genes.

    Science.gov (United States)

    González-Thuillier, Irene; Venegas-Calerón, Mónica; Garcés, Rafael; von Wettstein-Knowles, Penny; Martínez-Force, Enrique

    2015-01-01

    Enoyl-[acyl carrier protein]-reductases from sunflower. A major factor contributing to the amount of fatty acids in plant oils are the first steps of their synthesis. The intraplastidic fatty acid biosynthetic pathway in plants is catalysed by type II fatty acid synthase (FAS). The last step in each elongation cycle is carried out by the enoyl-[ACP]-reductase, which reduces the dehydrated product of β-hydroxyacyl-[ACP] dehydrase using NADPH or NADH. To determine the mechanisms involved in the biosynthesis of fatty acids in sunflower (Helianthus annuus) seeds, two enoyl-[ACP]-reductase genes have been identified and cloned from developing seeds with 75 % identity: HaENR1 (GenBank HM021137) and HaENR2 (HM021138). The two genes belong to the ENRA and ENRB families in dicotyledons, respectively. The genetic duplication most likely originated after the separation of di- and monocotyledons. RT-qPCR revealed distinct tissue-specific expression patterns. Highest expression of HaENR1 was in roots, stems and developing cotyledons whereas that of H a ENR2 was in leaves and early stages of seed development. Genomic DNA gel blot analyses suggest that both are single-copy genes. In vivo activity of the ENR enzymes was tested by complementation experiments with the JP1111 fabI(ts) E. coli strain. Both enzymes were functional demonstrating that they interacted with the bacterial FAS components. That different fatty acid profiles resulted infers that the two Helianthus proteins have different structures, substrate specificities and/or reaction rates. The latter possibility was confirmed by in vitro analysis with affinity-purified heterologous-expressed enzymes that reduced the crotonyl-CoA substrate using NADH with different V max.

  13. The Onion (Allium cepa L.) R2R3-MYB Gene MYB1 Regulates Anthocyanin Biosynthesis.

    Science.gov (United States)

    Schwinn, Kathy E; Ngo, Hanh; Kenel, Fernand; Brummell, David A; Albert, Nick W; McCallum, John A; Pither-Joyce, Meeghan; Crowhurst, Ross N; Eady, Colin; Davies, Kevin M

    2016-01-01

    Bulb color is an important consumer trait for onion ( Allium cepa L., Allioideae, Asparagales). The bulbs accumulate a range of flavonoid compounds, including anthocyanins (red), flavonols (pale yellow), and chalcones (bright yellow). Flavonoid regulation is poorly characterized in onion and in other plants belonging to the Asparagales, despite being a major plant order containing many important crop and ornamental species. R2R3-MYB transcription factors associated with the regulation of distinct branches of the flavonoid pathway were isolated from onion. These belonged to sub-groups (SGs) that commonly activate anthocyanin (SG6, MYB1) or flavonol (SG7, MYB29) production, or repress phenylpropanoid/flavonoid synthesis (SG4, MYB4, MYB5). MYB1 was demonstrated to be a positive regulator of anthocyanin biosynthesis by the induction of anthocyanin production in onion tissue when transiently overexpressed and by reduction of pigmentation when transiently repressed via RNAi. Furthermore, ectopic red pigmentation was observed in garlic ( Allium sativum L.) plants stably transformed with a construct for co-overexpression of MYB1 and a bHLH partner. MYB1 also was able to complement the acyanic petal phenotype of a defined R2R3-MYB anthocyanin mutant in Antirrhinum maju s of the asterid clade of eudicots. The availability of sequence information for flavonoid-related MYBs from onion enabled phylogenetic groupings to be determined across monocotyledonous and dicotyledonous species, including the identification of characteristic amino acid motifs. This analysis suggests that divergent evolution of the R2R3-MYB family has occurred between Poaceae/Orchidaceae and Allioideae species. The DNA sequences identified will be valuable for future analysis of classical flavonoid genetic loci in Allium crops and will assist the breeding of these important crop species.

  14. Erfahrungen mit der Bekämpfung von Ambrosia in der Schweiz – ein Rückblick

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    Bohren, Christian

    2014-07-01

    Full Text Available The dicotyledonous summer annual common ragweed (Ambrosia artemisiifolia L. is on the one hand a noxious arable weed and on the other hand an invasive neophyte with a great potential to spread. Various possibilities are known for control of common ragweed in agricultural fields with mechanical and chemical methods. Limits are set in sunflowers because sunflower and ragweed are botanically related. Because no weed control action results in 100% efficacy, common ragweed can propagate quickly in untreated corners of the field or in other disturbed soils. The legal obligation of reporting and control – introduced in Switzerland a couple of years ago – allowed the development of specific distribution maps and enhanced the quality of control measures. Facts and figures from the Canton of Geneva prove that the ragweed invasion has been stopped, but the species is not eradicated. The results of Geneva represent the results of good ragweed control in the whole country. Beside agriculture, traffic infrastructure, building sites, gravel pits and urban park and garden areas are sensible to ragweed invasion. This is why the formation of “Ambrosia Groups” helps to exchange experiences and to understand factors provoking the invasion. The responsibility of individuals helps to improve control efficiency even if financial funds are small. A sustainable control success depends on the efficiency to hamper seed production. The reduction of pollen quantity in the air in a long term is part of the earnings for the control effort. Actually, the publicity of common ragweed is fed by specialist information and its distribution in the media. It would be an interesting task to develop in our fast moving era an awareness level comparable to that of the stinging nettle.

  15. Root Differentiation of Agricultural Plant Cultivars and Proveniences Using FTIR Spectroscopy

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    Nicole Legner

    2018-06-01

    Full Text Available The differentiation of roots of agricultural species is desired for a deeper understanding of the belowground root interaction which helps to understand the complex interaction in intercropping and crop-weed systems. The roots can be reliably differentiated via Fourier transform infrared spectroscopy with attenuated total reflection (FTIR-ATR. In two replicated greenhouse experiments, six pea cultivars, five oat cultivars as well as seven maize cultivars and five barnyard grass proveniences (n = 10 plants/cultivar or provenience were grown under controlled conditions. One root of each plant was harvested and five different root segments of each root were separated, dried and measured with FTIR-ATR spectroscopy. The results showed that, firstly, the root spectra of single pea and single oat cultivars as well as single maize and single barnyard grass cultivars/proveniences separated species-specific in cluster analyses. In the majority of cases the species separation was correct, but in a few cases, the spectra of the root tips had to be omitted to ensure the precise separation between the species. Therefore, species differentiation is possible regardless of the cultivar or provenience. Consequently, all tested cultivars of pea and oat spectra were analyzed together and separated within a cluster analysis according to their affiliated species. The same result was found in a cluster analysis with maize and barnyard grass spectra. Secondly, a cluster analysis with all species (pea, oat, maize and barnyard grass was performed. The species split up species-specific and formed a dicotyledonous pea cluster and a monocotyledonous cluster subdivided in oat, maize and barnyard grass subclusters. Thirdly, cultivar or provenience differentiations within one species were possible in one of the two replicated experiments. But these separations were less resilient.

  16. Eocene age of the Baranowski Glacier Group at Red Hill, King George Island, West Antarctica

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    Mozer Anna

    2015-12-01

    Full Text Available Radiometric and geochemical studies were carried out at Red Hill in the southern part of King George Island (South Shetland Islands, northern Antarctic Peninsula on the Bransfield Strait coast. The rock succession at Red Hill has been determined to represent the Baranowski Glacier Group that was previously assigned a Late Cretaceous age. Two formations were distinguished within this succession: the lower Llano Point Formation and the upper Zamek Formation. These formations have stratotypes defined further to the north on the western coast of Admiralty Bay. On Red Hill the Llano Point Formation consists of terrestrial lavas and pyroclastic breccia; the Zamek Formation consist predominantly of fine to coarse tuff, pyroclastic breccia, lavas, tuffaceous mud-, silt-, and sandstone, locally conglomeratic. The lower part of the Zamek Formation contains plant detritus (Nothofagus, dicotyledonous, thermophilous ferns and numerous coal seams (vitrinitic composition that confirm the abundance of vegetation on stratovolcanic slopes and surrounding lowlands at that time. Selected basic to intermediate igneous rocks from the succession have been analysed for the whole-rock K-Ar age determination. The obtained results indicate that the Red Hill succession was formed in two stages: (1 from about 51–50 Ma; and (2 46–42 Ma, i.e. during the Early to Middle Eocene. This, in combination with other data obtained from other Baranowski Glacier Group exposures on western coast of Admiralty Bay, confirms the recently defined position of the volcano-clastic succession in the stratigraphic scheme of King George Island. The new stratigraphic position and lithofacies development of the Red Hill succession strongly suggest its correlation with other Eocene formations containing fossil plants and coal seams that commonly occur on King George Island.

  17. Towards a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom

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    Philipp eJanitza

    2012-12-01

    Full Text Available The mitogen-activated protein kinase (MAPK pathway is a three-tier signaling cascade that transmits cellular information from the plasma membrane to the cytoplasm where it triggers downstream responses. The MAPKs represent the last step in this cascade and are activated when both tyrosine and threonine residues in a conserved TxY motif are phosphorylated by MAPK kinases, which in turn are themselves activated by phosphorylation by MAPK kinase kinases. To understand the molecular evolution of MAPKs in the plant kingdom, we systematically conducted a Hidden-Markov-Model based screen to identify MAPKs in 13 completely sequenced plant genomes. In this analysis, we included green algae, bryophytes, lycophytes, and several mono- and dicotyledonous species covering >800 million years of evolution. The phylogenetic relationships of the 204 identified MAPKs based on Bayesian inference facilitated the retraction of the sequence of emergence of the four major clades that are characterized by the presence of a TDY or TEY-A/TEY-B/TEY-C type kinase activation loop. We present evidence that after the split of TDY- and TEY-type MAPKs, initially the TEY-C clade emerged. This was followed by the TEY-B clade in early land plants until the TEY-A clade finally emerged in flowering plants. In addition to these well characterized clades, we identified another highly conserved clade of 45 MAPK-likes, members of which were previously described as MHKs. In agreement with their essential functions, molecular population genetic analysis of MAPK genes in Arabidopsis thaliana accessions reveal that purifying selection drove the evolution of the MAPK family, implying strong functional constraints on MAPK genes. Closely related MAPKs most likely subfunctionalized, a process in which differential transcriptional regulation of duplicates may be involved.

  18. Strigolactone deficiency confers resistance in tomato line SL-ORT1 to the parasitic weeds Phelipanche and Orobanche spp.

    Science.gov (United States)

    Dor, Evgenia; Yoneyama, Koichi; Wininger, Smadar; Kapulnik, Yoram; Yoneyama, Kaori; Koltai, Hinanit; Xie, Xiaonan; Hershenhorn, Joseph

    2011-02-01

    The parasitic flowering plants of the genera Orobanche and Phelipanche (broomrape species) are obligatory chlorophyll-lacking root-parasitic weeds that infect dicotyledonous plants and cause heavy economic losses in a wide variety of plant species in warm-temperate and subtropical regions. One of the most effective strategies for broomrape control is crop breeding for broomrape resistance. Previous efforts to find natural broomrape-resistant tomato (Solanum lycopersicon) genotypes were unsuccessful, and no broomrape resistance was found in any wild tomato species. Recently, however, the fast-neutron-mutagenized tomato mutant SL-ORT1 was found to be highly resistant to various Phelipanche and Orobanche spp. Nevertheless, SL-ORT1 plants were parasitized by Phelipanche aegyptiaca if grown in pots together with the susceptible tomato cv. M-82. In the present study, no toxic activity or inhibition of Phelipanche seed germination could be detected in the SL-ORT1 root extracts. SL-ORT1 roots did not induce Phelipanche seed germination in pots but they were parasitized, at the same level as M-82, after application of the synthetic germination stimulant GR24 to the rhizosphere. Whereas liquid chromatography coupled to tandem mass spectrometry analysis of root exudates of M-82 revealed the presence of the strigolactones orobanchol, solanacol, and didehydro-orobanchol isomer, these compounds were not found in the exudates of SL-ORT1. It can be concluded that SL-ORT1 resistance results from its inability to produce and secrete natural germination stimulants to the rhizosphere.

  19. Crystal structure of prunin-1, a major component of the almond (Prunus dulcis) allergen amandin.

    Science.gov (United States)

    Jin, Tengchuan; Albillos, Silvia M; Guo, Feng; Howard, Andrew; Fu, Tong-Jen; Kothary, Mahendra H; Zhang, Yu-Zhu

    2009-09-23

    Seed storage proteins are accumulated during seed development and act as a reserve of nutrition for seed germination and young sprout growth. Plant seeds play an important role in human nutrition by providing a relatively inexpensive source of protein. However, many plant foods contain allergenic proteins, and the number of people suffering from food allergies has increased rapidly in recent years. The 11S globulins are the most widespread seed storage proteins, present in monocotyledonous and dicotyledonous seeds as well as in gymnosperms (conifers) and other spermatophytes. This family of proteins accounts for a number of known major food allergens. They are of interest to both the public and industry due to food safety concerns. Because of the interests in the structural basis of the allergenicity of food allergens, we sought to determine the crystal structure of Pru1, the major component of the 11 S storage protein from almonds. The structure was refined to 2.4 A, and the R/Rfree for the final refined structure is 17.2/22.9. Pru1 is a hexamer made of two trimers. Most of the back-to-back trimer-trimer association was contributed by monomer-monomer interactions. An alpha helix (helix 6) at the C-terminal end of the acidic domain of one of the interacting monomers lies at the cleft of the two protomers. The residues in this helix correspond to a flexible region in the peanut allergen Ara h 3 that encompasses a previously defined linear IgE epitope.

  20. Cobalt(ll) Coordination Compounds of Ethyl 4-Methyl-5-Imidazolecarboxylate: Chemical and Biochemical Characterization on Photosynthesis and Seed Germination

    Science.gov (United States)

    King-Díaz, Beatriz; Montes-Ayala, Josefina; Escartín-Guzmán, Concepción; Castillo-Blum, Silvia E.; Iglesias-Prieto, Roberto; Lotina-Hennsen, Blas; Barba-Behrens, Norah

    2005-01-01

    In this work we present the synthesis, structural and spectroscopic characterization of Co2+ coordination compounds with ethyl 4-methyl-5-imidazolecarboxylate (emizco). The effects of emizco, the metal salts CoCl2.6H2O, CoBr2, Co(NO3)2.6H2O and their metal coordination compounds [Co(emizco)2Cl2], [Co(emizco)2 Br2].H2O, [Co(emizco)2 (H2O)2(NO2)2.2H2O were evaluated on photosynthesis in spinach chloroplasts. Seed germination and seedling growth of the monocotyledonous species Lolium multiflorum and Triticum aestivum and the dicotyledonous species Trifolium alexandrinum and Physalis ixocarpa were also assayed under the effect of the compounds and salts. The results showed that cobalt(II) salts and their emizco coordination compounds inhibit photosynthetic electron flow and ATP-synthesis, behaving as Hill reaction inhibitors. Coordination compounds are more potent inhibitors than the salts. It was found that the salts target is at the b6f level while the complexes targets are at QB(D1)-protein and b6f level. The QB inhibition site was confirmed by variable chlorophyll a fluorescence yield. On the other hand, emizco inhibits seed germination, root and shoot development, in both weed and crop species. Cobalt(II) coordination compounds are the most effective photosynthesis inhibitors, but they are less potent than emizco in germination and seedling growth, while the metal salts are the least active of all. PMID:18365092

  1. Sieve element occlusion (SEO) genes encode structural phloem proteins involved in wound sealing of the phloem.

    Science.gov (United States)

    Ernst, Antonia M; Jekat, Stephan B; Zielonka, Sascia; Müller, Boje; Neumann, Ulla; Rüping, Boris; Twyman, Richard M; Krzyzanek, Vladislav; Prüfer, Dirk; Noll, Gundula A

    2012-07-10

    The sieve element occlusion (SEO) gene family originally was delimited to genes encoding structural components of forisomes, which are specialized crystalloid phloem proteins found solely in the Fabaceae. More recently, SEO genes discovered in various non-Fabaceae plants were proposed to encode the common phloem proteins (P-proteins) that plug sieve plates after wounding. We carried out a comprehensive characterization of two tobacco (Nicotiana tabacum) SEO genes (NtSEO). Reporter genes controlled by the NtSEO promoters were expressed specifically in immature sieve elements, and GFP-SEO fusion proteins formed parietal agglomerates in intact sieve elements as well as sieve plate plugs after wounding. NtSEO proteins with and without fluorescent protein tags formed agglomerates similar in structure to native P-protein bodies when transiently coexpressed in Nicotiana benthamiana, and the analysis of these protein complexes by electron microscopy revealed ultrastructural features resembling those of native P-proteins. NtSEO-RNA interference lines were essentially devoid of P-protein structures and lost photoassimilates more rapidly after injury than control plants, thus confirming the role of P-proteins in sieve tube sealing. We therefore provide direct evidence that SEO genes in tobacco encode P-protein subunits that affect translocation. We also found that peptides recently identified in fascicular phloem P-protein plugs from squash (Cucurbita maxima) represent cucurbit members of the SEO family. Our results therefore suggest a common evolutionary origin for P-proteins found in the sieve elements of all dicotyledonous plants and demonstrate the exceptional status of extrafascicular P-proteins in cucurbits.

  2. Occurrence of different phytoplasma infections in wild herbaceous dicots growing in vineyards affected by bois noir in Tuscany (Italy

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    Guido MARCHI

    2015-12-01

    Full Text Available Wild herbaceous dicotyledonous plants (dicots showing symptoms ascribable to phytoplasma disorders were found to be widely distributed in organic vineyards in central Tuscany (Italy affected by bois noir, a grapevine yellows disease caused by “Candidatus Phytoplasma solani”. In 2010 symptomatic dicots were tentatively identified to species level and the incidence of symptoms estimated in two selected vineyards in the province of Florence. Incidence ranged from 2 to 77%, and was not related to the relative abundance of hosts since very common species as well as relatively rare ones were consistently found to be symptomatic. PCR indexing and 16S rRNA sequence analyses indicated that two phytoplasmas co-existed in the vineyards: “Ca. P. solani”, infecting the root systems of 17 taxa, and a phytoplasma closely related to “Ca. P. phoenicium”, infecting 11 taxa, and occasionally co-infecting the same plant. Regardless of the high frequency of both pathogens in the vineyards, only “Ca. P. solani” could be detected in the grapevines. Population screening by means of tuf sequence analyses revealed the presence of only the tuf-b “Ca. P. solani” type both in dicot hosts and grapevine. This supports current notions of bois noir epidemiology, indicating that some infected dicots act as sources of “Ca. P. solani” inoculum whereas others are dead-end hosts. When the same specimens were screened by sequence analysis of the vmp1 gene, evidence was found that different phytoplasma genotypes may be predominant in grapevines and dicots.

  3. Leafcutter bee nests and pupae from the Rancho La Brea Tar Pits of Southern California: implications for understanding the paleoenvironment of the Late Pleistocene.

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    Anna R Holden

    Full Text Available The Rancho La Brea Tar Pits is the world's richest and most important Late Pleistocene fossil locality and best renowned for numerous fossil mammals and birds excavated over the past century. Less researched are insects, even though these specimens frequently serve as the most valuable paleoenvironemental indicators due to their narrow climate restrictions and life cycles. Our goal was to examine fossil material that included insect-plant associations, and thus an even higher potential for significant paleoenviromental data. Micro-CT scans of two exceptionally preserved leafcutter bee nest cells from the Rancho La Brea Tar Pits in Los Angeles, California reveal intact pupae dated between ∼23,000-40,000 radiocarbon years BP. Here identified as best matched to Megachile (Litomegachile gentilis Cresson (Hymenoptera: Megachilidae based on environmental niche models as well as morphometrics, the nest cells (LACMRLP 388E document rare preservation and life-stage. The result of complex plant-insect interactions, they offer new insights into the environment of the Late Pleistocene in southern California. The remarkable preservation of the nest cells suggests they were assembled and nested in the ground where they were excavated. The four different types of dicotyledonous leaves used to construct the cells were likely collected in close proximity to the nest and infer a wooded or riparian habitat with sufficient pollen sources for larval provisions. LACMRLP 388E is the first record of fossil Megachile Latreille cells with pupae. Consequently, it provides a pre-modern age location for a Nearctic group, whose phylogenetic relationships and biogeographic history remain poorly understood. Megachile gentilis appears to respond to climate change as it has expanded its distribution across elevation gradients over time as estimated by habitat suitability comparisons between low and high elevations; it currently inhabits mesic habitats which occurred at a lower

  4. Sunflower: A potential fructan-bearing crop?

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    Giselle eMartinez-Noel

    2015-10-01

    Full Text Available Grain filling in sunflower (Helianthus annuus L. mainly depends on actual photosynthesis, being the contribution of stored reserves in stems (sucrose, hexoses and starch rather low. Drought periods during grain filling often reduce yield. Increasing the capacity of stem to store reserves could help to increase grain filling and yield stability in dry years. Fructans improve water uptake in soils at low water potential, and allow the storage of large amount of assimilates per unit tissue volume that can be readily remobilized to grains. Sunflower is a close relative to Jerusalem artichoke (Helianthus tuberosus L., which accumulates large amounts of fructan (inulin in tubers and true stems. The reason why sunflower does not accumulate fructans is obscure. Through a bioinformatics analysis of a sunflower transcriptome database, we found sequences that are homologous to dicotyledon and monocotyledon fructan synthesis genes. A HPLC analysis of stem sugar composition revealed the presence of low amounts of 1-kestose, while a drastic enhancement of endogenous sucrose levels by capitulum removal did not promote 1-kestose accumulation. This suggests that the regulation of fructan synthesis in this species may differ from the currently best known model, mainly derived from research on Poaceae, where sucrose acts as both a signaling molecule and substrate, in the induction of fructan synthesis. Thus, sunflower might potentially constitute a fructan-bearing species, which could result in an improvement of its performance as a grain crop. However, a large effort is needed to elucidate how this up to now unsuspected potential could be effectively

  5. Evaluation of yield quality and weed infestation of common valerian (Valeriana officinalis L. in dependence on weed control method and forecrop.

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    Cezary Kwiatkowski

    2012-12-01

    Full Text Available A field experiment involving the cultivation of common valerian was conducted on loess soil in Abramów (Lublin region in the period 2007-2009. Qualitative parameters of herbal raw material obtained from this plant as well as in-crop weed infestation were evaluated depending on the protection method and forecrop. Hand-weeded plots, in which a hand hoe was used, were the control. In the other treatments, weeds were controlled using various herbicides and a mechanical implement (brush weeder. Potato and winter wheat + field pea cover crop were the forecrops for common valerian crops. A hypothesis was made that the use of a brush weeder and herbicides not registered for application in valerian crops would have a positive effect on this plant's productivity and weed infestation in its crops. It was also assumed that the introduction of a cover crop would allow the elimination of differences in the forecrop value of the crop stands in question. The best quantitative and qualitative parameters of common valerian raw material as well as the largest reduction of incrop weed infestation were recorded after the application of the herbicides which were not type approved. The use of the brush weeder in the interrows also had a beneficial effect on productivity of the plant in question, but secondary weed infestation at the end of the growing season of common valerian turned out to be its disadvantage. Traditional crop protection methods used in common valerian crops were less effective in weed infestation reduction and they resulted in lower plant productivity and raw material quality. Potato proved to be a better forecrop for common valerian than winter wheat + field pea; however, this positive effect was not confirmed statistically. The following annual weeds: Chenopodium album, Galinsoga parviflora, Stellaria media, were predominant in the common valerian crop. Traditional weed control methods resulted in the dominance of some dicotyledonous weeds, such

  6. BELVEDERE® Extra – a new high performance- herbicide in beets

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    Donati, Alexandra

    2014-03-01

    Full Text Available Common lambsquarters, cleavers, ladysthumb and wild buckwheat, chamomile, mercury, foolsparsleey and volunteer rapes are only some of the most important weeds in fooder and sugar beets. For the control of classical weed societies farmers can fall back on a limited number of active ingredients. Generally, Phenmedipham (PMP, Desmedipham (DMP and Ethofumesate are the basis of a spray sequence. They are complemented with other active ingredients depending on the specific weed situation. The newly formulated BELVEDERE® Extra combines the three mentioned active ingredients in an optimal ratio. Hence, the herbicide covers a very broad weed spectrum with an excellent efficacy on Common lambsquarters, cleavers, ladysthumb and wild buckwheat. BELVEDERE® EXTRA is a liquid, selective, and systemic herbicide. It is formulated as suspoemulsion so that a high efficacy is achieved while preserving a very good selectivity. The product allows for flexible control of leaf activity as an additive (e.g. OLEO FC is appended. Ethofumesate, which is mainly effective via the roots of the plant, belongs to a different HRAC group than Phenmedipham and Desmedipham. The high concentration of 200 g/L Ethofumesate leads to an effective resistance management especially regarding Fathen and other important weeds. Since 23rd of September 2013 BELVEDERE® extra is registered for post emergence splitting application (3 applications against annual dicotyledonous weeds. The maximum application rate per treatment is 1,3 L/ha. In combination with GOLTIX® TITAN® (Metamitron + Quinmerac or Goltix® Gold (Metamitron the weed spectrum is broadened. Basically, a timely application whose application rates are adapted to the location is essential for a good efficacy of beet herbicides.

  7. Genome-wide analysis of the AP2/ERF family in Eucalyptus grandis: an intriguing over-representation of stress-responsive DREB1/CBF genes.

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    P B Cao

    Full Text Available The AP2/ERF family includes a large number of developmentally and physiologically important transcription factors sharing an AP2 DNA-binding domain. Among them DREB1/CBF and DREB2 factors are known as master regulators respectively of cold and heat/osmotic stress responses.The manual annotation of AP2/ERF family from Eucalyptus grandis, Malus, Populus and Vitis genomes allowed a complete phylogenetic study for comparing the structure of this family in woody species and the model Arabidopsis thaliana. Expression profiles of the whole groups of EgrDREB1 and EgrDREB2 were investigated through RNAseq database survey and RT-qPCR analyses.The structure and the size of the AP2/ERF family show a global conservation for the plant species under comparison. In addition to an expansion of the ERF subfamily, the tree genomes mainly differ with respect to the group representation within the subfamilies. With regard to the E. grandis DREB subfamily, an obvious feature is the presence of 17 DREB1/CBF genes, the maximum reported to date for dicotyledons. In contrast, only six DREB2 have been identified, which is similar to the other plants species under study, except for Malus. All the DREB1/CBF and DREB2 genes from E. grandis are expressed in at least one condition and all are heat-responsive. Regulation by cold and drought depends on the genes but is not specific of one group; DREB1/CBF group is more cold-inducible than DREB2 which is mainly drought responsive.These features suggest that the dramatic expansion of the DREB1/CBF group might be related to the adaptation of this evergreen tree to climate changes when it expanded in Australia.

  8. Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia.

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    Gniadkowski, M; Hemmings-Mieszczak, M; Klahre, U; Liu, H X; Filipowicz, W

    1996-02-15

    Introns of nuclear pre-mRNAs in dicotyledonous plants, unlike introns in vertebrates or yeast, are distinctly rich in A+U nucleotides and this feature is essential for their processing. In order to define more precisely sequence elements important for intron recognition in plants, we investigated the effects of short insertions, either U-rich or A-rich, on splicing of synthetic introns in transfected protoplast of Nicotiana plumbaginifolia. It was found that insertions of U-rich (sequence UUUUUAU) but not A-rich (AUAAAAA) segments can activate splicing of a GC-rich synthetic infron, and that U-rich segments, or multimers thereof, can function irrespective of the site of insertion within the intron. Insertions of multiple U-rich segments, either at the same or different locations, generally had an additive, stimulatory effect on splicing. Mutational analysis showed that replacement of one or two U residues in the UUUUUAU sequence with A or C residues had only a small effect on splicing, but replacement with G residues was strongly inhibitory. Proteins that interact with fragments of natural and synthetic pre-mRNAs in vitro were identified in nuclear extracts of N.plumbaginifolia by UV cross- linking. The profile of cross-linked plant proteins was considerably less complex than that obtained with a HeLa cell nuclear extract. Two major cross-linkable plant proteins had apparent molecular mass of 50 and 54 kDa and showed affinity for oligouridilates present in synGC introns or for poly(U).

  9. Characterization of paralogous protein families in rice

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    Zhu Wei

    2008-02-01

    Full Text Available Abstract Background High gene numbers in plant genomes reflect polyploidy and major gene duplication events. Oryza sativa, cultivated rice, is a diploid monocotyledonous species with a ~390 Mb genome that has undergone segmental duplication of a substantial portion of its genome. This, coupled with other genetic events such as tandem duplications, has resulted in a substantial number of its genes, and resulting proteins, occurring in paralogous families. Results Using a computational pipeline that utilizes Pfam and novel protein domains, we characterized paralogous families in rice and compared these with paralogous families in the model dicotyledonous diploid species, Arabidopsis thaliana. Arabidopsis, which has undergone genome duplication as well, has a substantially smaller genome (~120 Mb and gene complement compared to rice. Overall, 53% and 68% of the non-transposable element-related rice and Arabidopsis proteins could be classified into paralogous protein families, respectively. Singleton and paralogous family genes differed substantially in their likelihood of encoding a protein of known or putative function; 26% and 66% of singleton genes compared to 73% and 96% of the paralogous family genes encode a known or putative protein in rice and Arabidopsis, respectively. Furthermore, a major skew in the distribution of specific gene function was observed; a total of 17 Gene Ontology categories in both rice and Arabidopsis were statistically significant in their differential distribution between paralogous family and singleton proteins. In contrast to mammalian organisms, we found that duplicated genes in rice and Arabidopsis tend to have more alternative splice forms. Using data from Massively Parallel Signature Sequencing, we show that a significant portion of the duplicated genes in rice show divergent expression although a correlation between sequence divergence and correlation of expression could be seen in very young genes. Conclusion

  10. Identification of QTLs for resistance to sclerotinia stem rot and BnaC.IGMT5.a as a candidate gene of the major resistant QTL SRC6 in Brassica napus.

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    Jian Wu

    Full Text Available Stem rot caused by Sclerotinia sclerotiorum in many important dicotyledonous crops, including oilseed rape (Brassica napus, is one of the most devastating fungal diseases and imposes huge yield loss each year worldwide. Currently, breeding for Sclerotinia resistance in B. napus, as in other crops, can only rely on germplasms with quantitative resistance genes. Thus, the identification of quantitative trait locus (QTL for S. sclerotiorum resistance/tolerance in this crop holds immediate promise for the genetic improvement of the disease resistance. In this study, ten QTLs for stem resistance (SR at the mature plant stage and three QTLs for leaf resistance (LR at the seedling stage in multiple environments were mapped on nine linkage groups (LGs of a whole genome map for B. napus constructed with SSR markers. Two major QTLs, LRA9 on LG A9 and SRC6 on LG C6, were repeatedly detected across all environments and explained 8.54-15.86% and 29.01%-32.61% of the phenotypic variations, respectively. Genotypes containing resistant SRC6 or LRA9 allele showed a significant reduction in disease lesion after pathogen infection. Comparative mapping with Arabidopsis and data mining from previous gene profiling experiments identified that the Arabidopsis homologous gene of IGMT5 (At1g76790 was related to the SRC6 locus. Four copies of the IGMT5 gene in B. napus were isolated through homologous cloning, among which, only BnaC.IGMT5.a showed a polymorphism between parental lines and can be associated with the SRC6. Furthermore, two parental lines exhibited a differential expression pattern of the BnaC.IGMT5.a gene in responding to pathogen inoculation. Thus, our data suggested that BnaC.IGMT5.a was very likely a candidate gene of this major resistance QTL.

  11. Analysis of apical hook formation in Alaska pea with a 3-D clinostat and agravitropic mutant ageotropum

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    Kensuke eMiyamoto

    2014-04-01

    Full Text Available The formation of the apical hook in dicotyledonous seedlings is believed to be effected by gravity in the dark. However, this notion is mostly based on experiments with the hook formed on the hypocotyl, and no detailed studies are available with the developmental manners of the hook, particularly of the epicotyl hook. The present study aims at clarifying the dynamics of hook formation including the possible involvement of gravity. Time-course studies with normal Alaska pea (Pisum sativum L., cv. Alaska and an agravitropic pea mutant, ageotropum, under the 1-g conditions and on a 3-D clinostat revealed that 1 the apical hook of the epicotyl forms by the development of the arc-shaped plumule of the embryo existing in the non-germinated seed. The process of formation consists of two stages: development and partial opening, which are controlled by some intrinsic property of the plumule, but not gravity. Approximately when the epicotyl emerges from the seed coat, the hook is established in both pea varieties. In Alaska the established hook is sustained or enhanced by gravity, resulting in a delay of hook opening compared with on a clinostat, which might give an incorrect idea that gravity causes hook formation. 2 During the hook development and opening processes the original plumular arc holds its orientation unchanged to be an established hook, which, therefore, is at the same side of the epicotyl axis as the cotyledons. This is true for both Alaska and ageotropum under 1-g conditions as well as on the clinostat, supporting finding (1. 3 Application of auxin polar transport inhibitors, hydroxyfluorenecarboxylic acid, naphthylphthalamic acid, and triiodobenzoic acid, suppressed the curvature of hook by equal extents in Alaska as well as ageotropum, suggesting that the hook development involves auxin polar transport probably asymmetrically distributed across the plumular axis by some intrinsic property of the plumule not directly related with gravity

  12. The population genomics of begomoviruses: global scale population structure and gene flow

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    Prasanna HC

    2010-09-01

    Full Text Available Abstract Background The rapidly growing availability of diverse full genome sequences from across the world is increasing the feasibility of studying the large-scale population processes that underly observable pattern of virus diversity. In particular, characterizing the genetic structure of virus populations could potentially reveal much about how factors such as geographical distributions, host ranges and gene flow between populations combine to produce the discontinuous patterns of genetic diversity that we perceive as distinct virus species. Among the richest and most diverse full genome datasets that are available is that for the dicotyledonous plant infecting genus, Begomovirus, in the Family Geminiviridae. The begomoviruses all share the same whitefly vector, are highly recombinogenic and are distributed throughout tropical and subtropical regions where they seriously threaten the food security of the world's poorest people. Results We focus here on using a model-based population genetic approach to identify the genetically distinct sub-populations within the global begomovirus meta-population. We demonstrate the existence of at least seven major sub-populations that can further be sub-divided into as many as thirty four significantly differentiated and genetically cohesive minor sub-populations. Using the population structure framework revealed in the present study, we further explored the extent of gene flow and recombination between genetic populations. Conclusions Although geographical barriers are apparently the most significant underlying cause of the seven major population sub-divisions, within the framework of these sub-divisions, we explore patterns of gene flow to reveal that both host range differences and genetic barriers to recombination have probably been major contributors to the minor population sub-divisions that we have identified. We believe that the global Begomovirus population structure revealed here could

  13. Identification and characterisation of Short Interspersed Nuclear Elements in the olive tree (Olea europaea L.) genome.

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    Barghini, Elena; Mascagni, Flavia; Natali, Lucia; Giordani, Tommaso; Cavallini, Andrea

    2017-02-01

    Short Interspersed Nuclear Elements (SINEs) are nonautonomous retrotransposons in the genome of most eukaryotic species. While SINEs have been intensively investigated in humans and other animal systems, SINE identification has been carried out only in a limited number of plant species. This lack of information is apparent especially in non-model plants whose genome has not been sequenced yet. The aim of this work was to produce a specific bioinformatics pipeline for analysing second generation sequence reads of a non-model species and identifying SINEs. We have identified, for the first time, 227 putative SINEs of the olive tree (Olea europaea), that constitute one of the few sets of such sequences in dicotyledonous species. The identified SINEs ranged from 140 to 362 bp in length and were characterised with regard to the occurrence of the tRNA domain in their sequence. The majority of identified elements resulted in single copy or very lowly repeated, often in association with genic sequences. Analysis of sequence similarity allowed us to identify two major groups of SINEs showing different abundances in the olive tree genome, the former with sequence similarity to SINEs of Scrophulariaceae and Solanaceae and the latter to SINEs of Salicaceae. A comparison of sequence conservation between olive SINEs and LTR retrotransposon families suggested that SINE expansion in the genome occurred especially in very ancient times, before LTR retrotransposon expansion, and presumably before the separation of the rosids (to which Oleaceae belong) from the Asterids. Besides providing data on olive SINEs, our results demonstrate the suitability of the pipeline employed for SINE identification. Applying this pipeline will favour further structural and functional analyses on these relatively unknown elements to be performed also in other plant species, even in the absence of a reference genome, and will allow establishing general evolutionary patterns for this kind of repeats in

  14. A conserved cysteine motif is critical for rice ceramide kinase activity and function.

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    Fang-Cheng Bi

    Full Text Available Ceramide kinase (CERK is a key regulator of cell survival in dicotyledonous plants and animals. Much less is known about the roles of CERK and ceramides in mediating cellular processes in monocot plants. Here, we report the characterization of a ceramide kinase, OsCERK, from rice (Oryza sativa spp. Japonica cv. Nipponbare and investigate the effects of ceramides on rice cell viability.OsCERK can complement the Arabidopsis CERK mutant acd5. Recombinant OsCERK has ceramide kinase activity with Michaelis-Menten kinetics and optimal activity at 7.0 pH and 40°C. Mg2+ activates OsCERK in a concentration-dependent manner. Importantly, a CXXXCXXC motif, conserved in all ceramide kinases and important for the activity of the human enzyme, is critical for OsCERK enzyme activity and in planta function. In a rice protoplast system, inhibition of CERK leads to cell death and the ratio of added ceramide and ceramide-1-phosphate, CERK's substrate and product, respectively, influences cell survival. Ceramide-induced rice cell death has apoptotic features and is an active process that requires both de novo protein synthesis and phosphorylation, respectively. Finally, mitochondria membrane potential loss previously associated with ceramide-induced cell death in Arabidopsis was also found in rice, but it occurred with different timing.OsCERK is a bona fide ceramide kinase with a functionally and evolutionarily conserved Cys-rich motif that plays an important role in modulating cell fate in plants. The vital function of the conserved motif in both human and rice CERKs suggests that the biochemical mechanism of CERKs is similar in animals and plants. Furthermore, ceramides induce cell death with similar features in monocot and dicot plants.

  15. Crystal Structure of Prunin-1, a Major Component of the Almond (Prunus dulcis) Allergen Amandin

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    Jin, Tengchuan; Albillos, Silvia M.; Guo, Feng; Howard, Andrew; Fu, Tong-Jen; Kothary, Mahendra H.; Zhang, Yu-Zhu; (IIT); (US-FDA); (IT)

    2010-10-28

    Seed storage proteins are accumulated during seed development and act as a reserve of nutrition for seed germination and young sprout growth. Plant seeds play an important role in human nutrition by providing a relatively inexpensive source of protein. However, many plant foods contain allergenic proteins, and the number of people suffering from food allergies has increased rapidly in recent years. The 11S globulins are the most widespread seed storage proteins, present in monocotyledonous and dicotyledonous seeds as well as in gymnosperms (conifers) and other spermatophytes. This family of proteins accounts for a number of known major food allergens. They are of interest to both the public and industry due to food safety concerns. Because of the interests in the structural basis of the allergenicity of food allergens, we sought to determine the crystal structure of Pru1, the major component of the 11 S storage protein from almonds. The structure was refined to 2.4 {angstrom}, and the R/Rfree for the final refined structure is 17.2/22.9. Pru1 is a hexamer made of two trimers. Most of the back-to-back trimer-trimer association was contributed by monomer-monomer interactions. An {alpha} helix (helix 6) at the C-terminal end of the acidic domain of one of the interacting monomers lies at the cleft of the two protomers. The residues in this helix correspond to a flexible region in the peanut allergen Ara h 3 that encompasses a previously defined linear IgE epitope.

  16. Resistance to quinclorac caused by the enhanced ability to detoxify cyanide and its molecular mechanism in Echinochloa crus-galli var. zelayensis.

    Science.gov (United States)

    Gao, Yuan; Pan, Lang; Sun, Yu; Zhang, Teng; Dong, Liyao; Li, Jun

    2017-11-01

    Quinclorac, an auxin-type herbicide, is widely used to control barnyardgrass and some dicotyledon weeds. Echinochloa crus-galli var. zelayensis, a variety of E. crus-galli (L.) Beauv., is widespread in China and some populations have resistance to quinclorac. E. crus-galli var. zelayensis seeds with varying sensitivity to quinclorac were used in the present study. The expression of the ADP/ATP carrier protein (ANT) gene, which plays an important role in the maintenance of cellular energy balance, dramatically rose in the S biotype after exposure to quinclorac, while no change was found in two R biotypes. The activity of β-cyanoalanine synthase (β-CAS), which is the key enzyme for cyanide degradation, was higher in two R biotypes than in the S biotype before and after treatment with quinclorac. One single-nucleotide difference was detected in the EcCAS gene of two R biotypes compared with the S biotype. The nucleotide change, which caused one amino acid substitution, replacing Methionine (Met)-295 with Lysine (Lys)-295 in the two R biotypes, which are same as the rice β-CAS gene at this position. In addition, EcCAS gene expression was higher in the two R biotypes than in the S biotype. In conclusion, β-CAS may play a crucial role in the resistance of E. crus-galli var. zelayensis to quinclorac. EcCAS gene mutation and higher gene expression may enhance the activity of β-CAS to avoid the accumulation of toxic cyanide in resistant populations, thus contributing to the resistance mechanism of E. crus-galli var. zelayensis. to quinclorac. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. Immunomodulatory and therapeutic properties of the Nigella sativa L. seed.

    Science.gov (United States)

    Salem, Mohamed Labib

    2005-12-01

    A larger number of medicinal plants and their purified constituents have been shown beneficial therapeutic potentials. Seeds of Nigella sativa, a dicotyledon of the Ranunculaceae family, have been employed for thousands of years as a spice and food preservative. The oil and seed constituents, in particular thymoquinine (TQ), have shown potential medicinal properties in traditional medicine. In view of the recent literature, this article lists and discusses different immunomodulatory and immunotherapeutic potentials for the crude oil of N. sativa seeds and its active ingredients. The published findings provide clear evidence that both the oil and its active ingredients, in particular TQ, possess reproducible anti-oxidant effects through enhancing the oxidant scavenger system, which as a consequence lead to antitoxic effects induced by several insults. The oil and TQ have shown also potent anti-inflammatory effects on several inflammation-based models including experimental encephalomyelitis, colitis, peritonitis, oedama, and arthritis through suppression of the inflammatory mediators prostaglandins and leukotriens. The oil and certain active ingredients showed beneficial immunomodulatory properties, augmenting the T cell- and natural killer cell-mediated immune responses. Most importantly, both the oil and its active ingredients expressed anti-microbial and anti-tumor properties toward different microbes and cancers. Coupling these beneficial effects with its use in folk medicine, N. sativa seed is a promising source for active ingredients that would be with potential therapeutic modalities in different clinical settings. The efficacy of the active ingredients, however, should be measured by the nature of the disease. Given their potent immunomodulatory effects, further studies are urgently required to explore bystander effects of TQ on the professional antigen presenting cells, including macrophages and dendritic cells, as well as its modulatory effects upon Th1

  18. Lack of S-RNase-Based Gametophytic Self-Incompatibility in Orchids Suggests That This System Evolved after the Monocot-Eudicot Split

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    Shan-Ce Niu

    2017-06-01

    Full Text Available Self-incompatibility (SI is found in approximately 40% of flowering plant species and at least 100 families. Although orchids belong to the largest angiosperm family, only 10% of orchid species present SI and have gametophytic SI (GSI. Furthermore, a majority (72% of Dendrobium species, which constitute one of the largest Orchidaceae genera, show SI and have GSI. However, nothing is known about the molecular mechanism of GSI. The S-determinants of GSI have been well characterized at the molecular level in Solanaceae, Rosaceae, and Plantaginaceae, which use an S-ribonuclease (S-RNase-based system. Here, we investigate the hypothesis that Orchidaceae uses a similar S-RNase to those described in Rosaceae, Solanaceae, and Plantaginaceae SI species. In this study, two SI species (Dendrobium longicornu and D. chrysanthum were identified using fluorescence microscopy. Then, the S-RNase- and SLF-interacting SKP1-like1 (SSK1-like genes present in their transcriptomes and the genomes of Phalaenopsis equestris, D. catenatum, Vanilla shenzhenica, and Apostasia shenzhenica were investigated. Sequence, phylogenetic, and tissue-specific expression analyses revealed that none of the genes identified was an S-determinant, suggesting that Orchidaceae might have a novel SI mechanism. The results also suggested that RNase-based GSI might have evolved after the split of monocotyledons (monocots and dicotyledons (dicots but before the split of Asteridae and Rosidae. This is also the first study to investigate S-RNase-based GSI in monocots. However, studies on gene identification, differential expression, and segregation analyses in controlled crosses are needed to further evaluate the genes with high expression levels in GSI tissues.

  19. Oxidative stress protection and stomatal patterning as components of salinity tolerance mechanism in quinoa (Chenopodium quinoa).

    Science.gov (United States)

    Shabala, Lana; Mackay, Alex; Tian, Yu; Jacobsen, Sven-Erik; Zhou, Daowei; Shabala, Sergey

    2012-09-01

    Two components of salinity stress are a reduction in water availability to plants and the formation of reactive oxygen species. In this work, we have used quinoa (Chenopodium quinoa), a dicotyledonous C3 halophyte species displaying optimal growth at approximately 150 mM NaCl, to study mechanisms by which halophytes cope with the afore-mentioned components of salt stress. The relative contribution of organic and inorganic osmolytes in leaves of different physiological ages (e.g. positions on the stem) was quantified and linked with the osmoprotective function of organic osmolytes. We show that the extent of the oxidative stress (UV-B irradiation) damage to photosynthetic machinery in young leaves is much less when compared with old leaves, and attribute this difference to the difference in the size of the organic osmolyte pool (1.5-fold difference under control conditions; sixfold difference in plants grown at 400 mM NaCl). Consistent with this, salt-grown plants showed higher Fv/Fm values compared with control plants after UV-B exposure. Exogenous application of physiologically relevant concentrations of glycine betaine substantially mitigated oxidative stress damage to PSII, in a dose-dependent manner. We also show that salt-grown plants showed a significant (approximately 30%) reduction in stomatal density observed in all leaves. It is concluded that accumulation of organic osmolytes plays a dual role providing, in addition to osmotic adjustment, protection of photosynthetic machinery against oxidative stress in developing leaves. It is also suggested that salinity-induced reduction in stomatal density represents a fundamental mechanism by which plants optimize water use efficiency under saline conditions. Copyright © Physiologia Plantarum 2012.

  20. In vitro screening for the tumoricidal properties of international medicinal herbs.

    Science.gov (United States)

    Mazzio, Elizabeth A; Soliman, Karam F A

    2009-03-01

    There is growing use of anticancer complementary and alternative medicines (CAMs) worldwide. The purpose of the current study is to assess a sizeable variety of natural and plant sources of diverse origin, to ascertain prospective research directives for cancer treatment and potential new chemotherapy drug sources. In this study, 374 natural extracts (10 microg/mL-5 mg/mL) were evaluated for dose-dependent tumoricidal effects using immortal neuroblastoma of spontaneous malignant origin. The findings indicate no pattern of tumoricidal effects by diverse plants with similar families/genus under the classes Pinopsida, Equisetopsida, Lycopodiosida, Filicosida, Liliopsida Monocotyledons or Magnoliopsida Dicotyledons. The results indicate that many of the most commonly used CAMs exhibited relatively weak tumoricidal effects including cats claw, astragalus, ginseng, echinacea, mistletoe, milk thistle, slippery elm, cayenne, chamomile, don quai, meadowsweet, motherwort and shepherd's purse. The data demonstrate that the most potent plant extracts were randomly dispersed within the plantae kingdom (LC(50) = 31-490 microg/mL) in order of the lowest LC(50) Dioscorea villosa (Dioscoreaceae) > Sanguinaria canadensis (Papaveraceae) > Dipsacus asper (Dipsacaceae) > Populus balsamifera (Salicaceae) > Boswellia carteri (Burseraceae) > Cyamopsis psoralioides (Fabaceae) > Rhamnus cathartica (Rhamnaceae) > Larrea tridentate (Zygophyllaceae) > Dichroa febrifuga (Hydrangeaceae) > Batschia canescens (Boraginaceae) > Kochia scoparia (Chenopodiaceae) > Solanum xanthocarpum (Solanaceae) > Opoponax chironium (Umbelliferae) > Caulophyllum thalictroides (Berberidaceae) > Dryopteris crassirhizoma (Dryopteridaceae) > Garcinia cambogia (Clusiaceae) > Vitex agnus-castus (Verbenaceae) > Calamus draco (Arecaceae). These findings show tumoricidal effect by extracts of wild yam root, bloodroot, teasel root, bakuchi seed, dichroa root, kanta kari, garcinia fruit, mace, dragons blood and the biblically

  1. Effect of straw mulch residues of previous crop oats on the weed population in direct seeded faba bean in Organic Farming

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    Massucati, Luiz Felipe Perrone

    2014-02-01

    Full Text Available Under conditions of Organic Farming, we investigated whether direct seeding of faba bean (Vicia faba L. into straw mulch from residues of precrop oats used for weed control enables at least occasional/opportunistic direct seeding in Organic Agriculture. Eight field trials were carried out at different study sites in North Rhine-Westphalia, Germany, in 2008-2009 and 2009-2010. Direct seeding (DS was performed into mulch layers of 0,4 and 6 t ha-1 of straw residues applied to the remaining stubble, simulating different yield levels of the precrop oats. LBS was used as a reference treatment, where straw was harvested, stubble tillage performed and seedbed prepared in fall and oil radish (Raphanus sativus grown as winter cover crop. Mouldboard ploughing combined with conventional seedbed preparation was performed in early spring to V. faba. Compared with LBS, straw mulch with subsequent direct seeding suppressed especially dicotyledonous annuals significantly. DS treatments with straw reduced the abundance of this group by 81 and 85% compared with LBS. Straw mulch resulted in effective suppression of photosensitive weeds such as Matricaria spp. and late germinating Chenopodium album. Grasses and perennial species occurred independent of the amount of straw. Compared with DS, the abundance of these weeds was reduced by 64 and 82% in LBS treatment. The shoot dry matter production of faba bean was retarded by DS compared with LBS, but significant yield losses could be avoided with straw residues of at least 4 t ha-1. Sufficient amount of straw of from the previous crop is a key criterion to facilitate organic no-till farming of faba bean in a suitable crop sequence when pressure of perennials and grasses is low.

  2. Leafcutter bee nests and pupae from the Rancho La Brea Tar Pits of Southern California: implications for understanding the paleoenvironment of the Late Pleistocene.

    Science.gov (United States)

    Holden, Anna R; Koch, Jonathan B; Griswold, Terry; Erwin, Diane M; Hall, Justin

    2014-01-01

    The Rancho La Brea Tar Pits is the world's richest and most important Late Pleistocene fossil locality and best renowned for numerous fossil mammals and birds excavated over the past century. Less researched are insects, even though these specimens frequently serve as the most valuable paleoenvironemental indicators due to their narrow climate restrictions and life cycles. Our goal was to examine fossil material that included insect-plant associations, and thus an even higher potential for significant paleoenviromental data. Micro-CT scans of two exceptionally preserved leafcutter bee nest cells from the Rancho La Brea Tar Pits in Los Angeles, California reveal intact pupae dated between ∼23,000-40,000 radiocarbon years BP. Here identified as best matched to Megachile (Litomegachile) gentilis Cresson (Hymenoptera: Megachilidae) based on environmental niche models as well as morphometrics, the nest cells (LACMRLP 388E) document rare preservation and life-stage. The result of complex plant-insect interactions, they offer new insights into the environment of the Late Pleistocene in southern California. The remarkable preservation of the nest cells suggests they were assembled and nested in the ground where they were excavated. The four different types of dicotyledonous leaves used to construct the cells were likely collected in close proximity to the nest and infer a wooded or riparian habitat with sufficient pollen sources for larval provisions. LACMRLP 388E is the first record of fossil Megachile Latreille cells with pupae. Consequently, it provides a pre-modern age location for a Nearctic group, whose phylogenetic relationships and biogeographic history remain poorly understood. Megachile gentilis appears to respond to climate change as it has expanded its distribution across elevation gradients over time as estimated by habitat suitability comparisons between low and high elevations; it currently inhabits mesic habitats which occurred at a lower elevation during

  3. A Virus-Induced Assay for Functional Dissection and Analysis of Monocot and Dicot Flowering Time Genes.

    Science.gov (United States)

    Qin, Cheng; Chen, Weiwei; Shen, Jiajia; Cheng, Linming; Akande, Femi; Zhang, Ke; Yuan, Chen; Li, Chunyang; Zhang, Pengcheng; Shi, Nongnong; Cheng, Qi; Liu, Yule; Jackson, Stephen; Hong, Yiguo

    2017-06-01

    Virus-induced flowering (VIF) uses virus vectors to express Flowering Locus T ( FT ) to induce flowering in plants. This approach has recently attracted wide interest for its practical applications in accelerating breeding in crops and woody fruit trees. However, the insight into VIF and its potential as a powerful tool for dissecting florigenic proteins remained to be elucidated. Here, we describe the mechanism and further applications of Potato virus X (PVX)-based VIF in the short-day Nicotiana tabacum cultivar Maryland Mammoth. Ectopic delivery of Arabidopsis ( Arabidopsis thaliana ) AtFT by PVX/AtFT did not induce the expression of the endogenous FT ortholog NtFT4 ; however, it was sufficient to trigger flowering in Maryland Mammoth plants grown under noninductive long-day conditions. Infected tobacco plants developed no systemic symptoms, and the PVX-based VIF did not cause transgenerational flowering. We showed that the PVX-based VIF is a much more rapid method to examine the impacts of single amino acid mutations on AtFT for floral induction than making individual transgenic Arabidopsis lines for each mutation. We also used the PVX-based VIF to demonstrate that adding a His- or FLAG-tag to the N or C terminus of AtFT could affect its florigenic activity and that this system can be applied to assay the function of FT genes from heterologous species, including tomato ( Solanum lycopersicum ) SFT and rice ( Oryza sativa ) Hd3a Thus, the PVX-based VIF represents a simple and efficient system to identify individual amino acids that are essential for FT-mediated floral induction and to test the ability of mono- and dicotyledonous FT genes and FT fusion proteins to induce flowering. © 2017 American Society of Plant Biologists. All Rights Reserved.

  4. Quaternary ammonium salts with tetrafluoroborate anion: Phytotoxicity and oxidative stress in terrestrial plants

    Energy Technology Data Exchange (ETDEWEB)

    Biczak, Robert, E-mail: r.biczak@ajd.czest.pl

    2016-03-05

    Highlights: • The level of oxidative stress in mono- and dicotyledonous plants was comparable. • Chlorophyll content in the plants was correlated with QAS concentration in the soil. • POD activity increased in plants cultivated in soil with high QAS content. - Abstract: This paper discusses the impact of four quaternary ammonium salts (QAS) such as tetraethylammonium tetrafluoroborate [TEA][BF{sub 4}], tetrabutylammonium tetrafluoroborate [TBA][BF{sub 4}], tetrahexylammonium tetrafluoroborate [THA][BF{sub 4}], and tetraoctylammonium tetrafluoroborate [TOA][BF{sub 4}] on the growth and development of spring barley and common radish. Analogous tests were performed with the inorganic salt ammonium tetrafluoroborate [A][BF{sub 4}] for comparison purposes. Results indicated that the phytotoxicity of the QAS applied is dependent on the concentration of the substance and their number of carbon atoms. The most toxic compound was [TBA][BF{sub 4}], causing the greatest drop in fresh weight of both study plants, similar to the phytotoxic effects of [A][BF{sub 4}]. All the tested compounds caused oxidative stress in spring barley and common radish seedlings due to a drop in the chlorophyll content. Stress was also observed in plants, which was indicated by the increased level of ROS (reactive oxygen species) such as H{sub 2}O{sub 2} and lipid peroxidation of MDA (malondialdehyde). Due to the stress, both plants displayed changes in the activity of antioxidative enzymes such as superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD). Based on the results of the study, it was concluded that changes in chlorophyll levels and peroxidase activity are the best biomarkers to determine oxidative stress in plants.

  5. Efeito de diferentes herbicidas nas culturas de alho e cebola Effect of different herbicides on garlic and onion crops

    Directory of Open Access Journals (Sweden)

    Robert Deuber

    1983-01-01

    ório.O oxadiazon em PRÉ e o linuron em PÓS foram os mais eficientes no controle de gramíneas. Não houve diferenças entre as produções de cebola nos diferentes tratamentos.Two field trials with garlic 'Lavínia' and onion 'Monte Alegre' and 'Roxa do Traviú' were performed on a loamy soil to study herbicide selectivity and their efficiency on weed control. The following treatments were studied on garlic: pendimethalin at 1.50 kg/ha; linuron at 1.00 kg/ha and oxadiazon at 1.00 kg/ha, applied in pre-emergence at the planting day; ioxynil at 0.50 and 0.75 kg/ha, ioxynil + oxadiazon at 0.75 + 0,25 kg/ha and 0.50 + 0.50 kg/ha, applied 35 days after, weeded and hoed checks and a check with mulch. The weed population was a mixture of various types of weeds; predominated by Portucala oleracea L. Weed control was evaluated at 48 and 84 days. All treatments controlled very well the dicotyledons. Ioxynil alone or mixed with oxadiazon in post-emergence did not control grasses. None of the herbicide treatments reduced the garlic stand, occurring the lowest number on the checks with weeds and mulch. The yields occurred in the following: hoed check > oxadiazon > ioxynil + oxadiazon at 0.50 + 0.50 kg/ha = pendimethalin = mulch = ioxynil + oxadiazon at 0.75 + 0.25 kg/ha > linuron > ioxynil at 0.75 kg/ha > ioxynil at 0.50 kg/ha > weeded check. On the onion crop the following treatments were studied: pendimethalin at 1.50 kg/ha, linuron at 1.00 kg/ha, oxadiazon at 1.00 kg/ha, and chloroxuron at 4.00 kg/ha, applied in pre-emergence on the day of transplanting; ioxynil at 0.50 and 0.75 kg/ha, oxadiazon + ioxynil at 0.75 + 0.25 kg/ha, at 1.00 + 0.25 kg/ha and at 1.00 + 1.00 kg/ha and linuron at 1.00 kg/ha, all applied 32 days after, weeded and hoed checks. The weeds occurring were predominantly dicotyledons being Portulaca oleracea L. and Chenopodium album L. the most dominant. Control evaluation was done at 48 days showing an excelent control of dicotyledons (over 95% by all treatments. Ioxynil

  6. Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening.

    Science.gov (United States)

    Freixas Coutin, José A; Munholland, Seth; Silva, Anjali; Subedi, Sanjeena; Lukens, Lewis; Crosby, William L; Pauls, K Peter; Bozzo, Gale G

    2017-05-25

    Edible dry beans (Phaseolus vulgaris L.) that darken during postharvest storage are graded lower and are less marketable than their non-darkened counterparts. Seed coat darkening in susceptible genotypes is dependent upon the availability of proanthocyanidins, and their subsequent oxidation to reactive quinones. Mature cranberry beans lacking this postharvest darkening trait tend to be proanthocyanidin-deficient, although the underlying molecular and biochemical determinants for this metabolic phenomenon are unknown. Seed coat proanthocyanidin levels increased with plant maturation in a darkening-susceptible cranberry bean recombinant inbred line (RIL), whereas these metabolites were absent in seeds of the non-darkening RIL plants. RNA sequencing (RNA-seq) analysis was used to monitor changes in the seed coat transcriptome as a function of bean development, where transcript levels were measured as fragments per kilobase of exon per million fragments mapped. A total of 1336 genes were differentially expressed between darkening and non-darkening cranberry bean RILs. Structural and regulatory genes of the proanthocyanidin biosynthesis pathway were upregulated in seed coats of the darkening RIL. A principal component analysis determined that changes in transcript levels for two genes of unknown function and three proanthocyanidin biosynthesis genes, FLAVANONE 3-HYDROXYLASE 1, DIHYDROFLAVONOL 4-REDUCTASE 1 and ANTHOCYANIDIN REDUCTASE 1 (PvANR1) were highly correlated with proanthocyanidin accumulation in seed coats of the darkening-susceptible cranberry bean RIL. HPLC-DAD analysis revealed that in vitro activity of a recombinant PvANR1 was NADPH-dependent and assays containing cyanidin yielded epicatechin and catechin; high cyanidin substrate levels inhibited the formation of both of these products. Proanthocyanidin oxidation is a pre-requisite for postharvest-related seed coat darkening in dicotyledonous seeds. In model plant species, the accumulation of

  7. The pepper Bs4C proteins are localized to the endoplasmic reticulum (ER) membrane and confer disease resistance to bacterial blight in transgenic rice.

    Science.gov (United States)

    Wang, Jun; Zeng, Xuan; Tian, Dongsheng; Yang, Xiaobei; Wang, Lanlan; Yin, Zhongchao

    2018-03-30

    Transcription activator-like effector (TALE)-dependent dominant disease resistance (R) genes in plants, also referred to as executor R genes, are induced on infection by phytopathogenic bacteria of the genus Xanthomonas harbouring the corresponding TALE genes. Unlike the traditional R proteins, the executor R proteins do not determine the resistance specificity and may function broadly in different plant species. The executor R gene Bs4C-R in the resistant genotype PI 235047 of the pepper species Capsicum pubescens (CpBs4C-R) confers disease resistance to Xanthomonas campestris pv. vesicatoria (Xcv) harbouring the TALE genes avrBsP/avrBs4. In this study, the synthetic genes of CpBs4C-R and two other Bs4C-like genes, the susceptible allele in the genotype PI585270 of C. pubescens (CpBs4C-S) and the CaBs4C-R homologue gene in the cultivar 'CM334' of Capsicum annum (CaBs4C), were characterized in tobacco (Nicotiana benthamiana) and rice (Oryza sativa). The Bs4C genes induced cell death in N. benthamiana. The functional Bs4C-eCFP fusion proteins were localized to the endoplasmic reticulum (ER) membrane in the leaf epidermal cells of N. benthamiana. The Xa10 promoter-Bs4C fusion genes in transgenic rice conferred strain-specific disease resistance to Xanthomonas oryzae pv. oryzae (Xoo), the causal agent of bacterial blight in rice, and were specifically induced by the Xa10-incompatible Xoo strain PXO99 A (pHM1avrXa10). The results indicate that the Bs4C proteins from pepper species function broadly in rice and the Bs4C protein-mediated cell death from the ER is conserved between dicotyledonous and monocotyledonous plants, which can be utilized to engineer novel and enhanced disease resistance in heterologous plants. © 2018 TEMASEK LIFE SCIENCES LABORATORY. MOLECULAR PLANT PATHOLOGY © 2018 JOHN WILEY & SONS LTD.

  8. Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers Disease Resistance to Rice Bacterial Blight.

    Science.gov (United States)

    Wang, Jun; Tian, Dongsheng; Gu, Keyu; Yang, Xiaobei; Wang, Lanlan; Zeng, Xuan; Yin, Zhongchao

    2017-06-01

    , show self-interaction, and induce ER Ca 2+ depletion in leaf cells of N. benthamiana. The results indicate that Xa10-Ni and Xa23-Ni in Nipponbare encode functional executor R proteins, which induce cell death in both monocotyledonous and dicotyledonous plants and have the potential of being engineered to provide broad-spectrum disease resistance to plant-pathogenic Xanthomonas spp.

  9. Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants.

    Science.gov (United States)

    Rüping, Boris; Ernst, Antonia M; Jekat, Stephan B; Nordzieke, Steffen; Reineke, Anna R; Müller, Boje; Bornberg-Bauer, Erich; Prüfer, Dirk; Noll, Gundula A

    2010-10-08

    The phloem of dicotyledonous plants contains specialized P-proteins (phloem proteins) that accumulate during sieve element differentiation and remain parietally associated with the cisternae of the endoplasmic reticulum in mature sieve elements. Wounding causes P-protein filaments to accumulate at the sieve plates and block the translocation of photosynthate. Specialized, spindle-shaped P-proteins known as forisomes that undergo reversible calcium-dependent conformational changes have evolved exclusively in the Fabaceae. Recently, the molecular characterization of three genes encoding forisome components in the model legume Medicago truncatula (MtSEO1, MtSEO2 and MtSEO3; SEO = sieve element occlusion) was reported, but little is known about the molecular characteristics of P-proteins in non-Fabaceae. We performed a comprehensive genome-wide comparative analysis by screening the M. truncatula, Glycine max, Arabidopsis thaliana, Vitis vinifera and Solanum phureja genomes, and a Malus domestica EST library for homologs of MtSEO1, MtSEO2 and MtSEO3 and identified numerous novel SEO genes in Fabaceae and even non-Fabaceae plants, which do not possess forisomes. Even in Fabaceae some SEO genes appear to not encode forisome components. All SEO genes have a similar exon-intron structure and are expressed predominantly in the phloem. Phylogenetic analysis revealed the presence of several subgroups with Fabaceae-specific subgroups containing all of the known as well as newly identified forisome component proteins. We constructed Hidden Markov Models that identified three conserved protein domains, which characterize SEO proteins when present in combination. In addition, one common and three subgroup specific protein motifs were found in the amino acid sequences of SEO proteins. SEO genes are organized in genomic clusters and the conserved synteny allowed us to identify several M. truncatula vs G. max orthologs as well as paralogs within the G. max genome. The unexpected

  10. [Leaf nitrogen and phosphorus stoichiometry of shrubland plants in the rocky desertification area of Southwestern Hunan, China.

    Science.gov (United States)

    Jing, Yi Ran; Deng, Xiang Wen; Wei, Hui; Li, Yan Qiong; Deng, Dong Hua; Liu, Hao Jian; Xiang, Wen Hua

    2017-02-01

    In this paper, we took the leaves of shrubland plants in rocky desertification area in Southwestern Hunan as the research object to analyze the nitrogen (N) and phosphorus (P) stoichiometry characteristics for different functional groups and different grades of rocky desertification, i.e., light rocky desertification (LRD), moderate rocky desertification (MRD) and intense rocky desertification (IRD). The results showed that the average contents of N and P were 12.89 and 1.19 g·kg -1 , respectively, and N/P was 11.24 in common shrubland plants in the study area, which indicated that the growth of most plants were mainly limited by N. The content of N was declined in order of deciduous shrubs > evergreen shrubs > annual herbs > perennial herbs. The content of P and N/P were higher in deciduous shrubs than in perennial herbs. Significant differences were found among the main families of plants in terms of the contents of N, P and N/P in the study sites. The plants of Gramineae had the lowest contents of N and P, andtheir growth was mostly restricted by N, while Leguminosae had the highest content of N and N/P, and their productivity was majorly controlled by P. The contents of N and P in the leaves were significantly higher in dicotyledon plants and C3 plants than in monocotyledon plants and C4 plants, but the N/P was not significantly diffe-rent between these two plant categories. The nitrogen-fixing plants had higher content of N and N/P than the non-nitrogen-fixing plants, but the P content was not significantly different between these two plant groups. There were significant correlations between contents of N and P, N/P and N in all study plots. No significant correlation was found between N/P and P content in the examined rocky desertification sites, except for that in MRD. There were no significant differences of the contents of N, P and N/P under different grades of rocky desertification.

  11. Effects of glufosinate-ammonium on off crop vegetation--interim results.

    Science.gov (United States)

    De Snoo, G R; De Jong, F M; Van Der Poll, R J; Van Der Linden, M G

    2001-01-01

    In 2000 a field study was conducted at four different locations concerning the effects of low dosages of glufosinate-ammonium, a leaf acting herbicide, on off crop vegetation. Therefore species rich road verges and ditch banks not adapted to a history of herbicide use were sprayed twice with different dosages of glufosinate-ammonium, simulating drift (0, 2, 4, 16, 32 and 64% of the maximum field dose: 800 g a.i./ha). The parameters studied were short term phytotoxic effects and the effects on biomass, species cover and number of species in autumn (Braun-Blanquêt relevés). The results show significant phytotoxic effects at all dosages of glufosinate-ammonium on the non-target vegetation. The low concentrations (2 and 4%) had most impact when applied early in the season (9% average at the 2% dosage and 22% at 4% dosage, after the first spraying. At high dosages (32 and 64%) a decrease of the biomass of the vegetation was found in August. A comparison between treatments in August shows a small decrease in species number and cover in the 64% compared to the control. In the comparison between the spring and August relevés, the decrease in the mean number of species was significantly stronger in the treated plots than in the untreated ones of 4% and higher. For monocotyledons in all treatments except 16%, a significantly stronger decrease in species number was found compared to the untreated. For dicotyledons only the 64% dosage differed from the untreated. Only at the 64% treatment the total cover of species decreased more than in the untreated plots. Since drift percentages of 2-4% can be expected at 1-2 m from a treated plot it can be concluded that the use of glufosinate-ammonium could result in visible short term phytotoxic effects (max 22%) on off-crop vegetation such as ditch banks and verges. There are also indications that effects on the number and cover of species in autumn can occur. Because in future glufosinate-ammonium could be used on a large scale in

  12. Root dynamics in an artificially constructed regenerating longleaf pine ecosystem are affected by atmospheric CO(2) enrichment.

    Science.gov (United States)

    Pritchard, S G.; Davis, M A.; Mitchell, R J.; Prior, S A.; Boykin, D L.; Rogers, H H.; Runion, G B.

    2001-08-01

    Differential responses to elevated atmospheric CO(2) concentration exhibited by different plant functional types may alter competition for above- and belowground resources in a higher CO(2) world. Because C allocation to roots is often favored over C allocation to shoots in plants grown with CO(2) enrichment, belowground function of forest ecosystems may change significantly. We established an outdoor facility to examine the effects of elevated CO(2) on root dynamics in artificially constructed communities of five early successional forest species: (1) a C(3) evergreen conifer (longleaf pine, Pinus palustris Mill.); (2) a C(4) monocotyledonous bunch grass (wiregrass, Aristida stricta Michx.); (3) a C(3) broadleaf tree (sand post oak, Quercus margaretta); (4) a C(3) perennial herbaceous legume (rattlebox, Crotalaria rotundifolia Walt. ex Gemel); and (5) an herbaceous C(3) dicotyledonous perennial (butterfly weed, Asclepias tuberosa L.). These species are common associates in early successional longleaf pine savannahs throughout the southeastern USA and represent species that differ in life-form, growth habit, physiology, and symbiotic relationships. A combination of minirhizotrons and soil coring was used to examine temporal and spatial rooting dynamics from October 1998 to October 1999. CO(2)-enriched plots exhibited 35% higher standing root crop length, 37% greater root length production per day, and 47% greater root length mortality per day. These variables, however, were enhanced by CO(2) enrichment only at the 10-30 cm depth. Relative root turnover (flux/standing crop) was unchanged by elevated CO(2). Sixteen months after planting, root biomass of pine was 62% higher in elevated compared to ambient CO(2) plots. Conversely, the combined biomass of rattlebox, wiregrass, and butterfly weed was 28% greater in ambient compared to high CO(2) plots. There was no difference in root biomass of oaks after 16 months of exposure to elevated CO(2). Using root and shoot

  13. Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition

    Directory of Open Access Journals (Sweden)

    O'Brien Kimberly

    2008-06-01

    Full Text Available Abstract Background The Solanaceae family contains a number of important crop species including potato (Solanum tuberosum which is grown for its underground storage organ known as a tuber. Albeit the 4th most important food crop in the world, other than a collection of ~220,000 Expressed Sequence Tags, limited genomic sequence information is currently available for potato and advances in potato yield and nutrition content would be greatly assisted through access to a complete genome sequence. While morphologically diverse, Solanaceae species such as potato, tomato, pepper, and eggplant share not only genes but also gene order thereby permitting highly informative comparative genomic analyses. Results In this study, we report on analysis 89.9 Mb of potato genomic sequence representing 10.2% of the genome generated through end sequencing of a potato bacterial artificial chromosome (BAC clone library (87 Mb and sequencing of 22 potato BAC clones (2.9 Mb. The GC content of potato is very similar to Solanum lycopersicon (tomato and other dicotyledonous species yet distinct from the monocotyledonous grass species, Oryza sativa. Parallel analyses of repetitive sequences in potato and tomato revealed substantial differences in their abundance, 34.2% in potato versus 46.3% in tomato, which is consistent with the increased genome size per haploid genome of these two Solanum species. Specific classes and types of repetitive sequences were also differentially represented between these two species including a telomeric-related repetitive sequence, ribosomal DNA, and a number of unclassified repetitive sequences. Comparative analyses between tomato and potato at the gene level revealed a high level of conservation of gene content, genic feature, and gene order although discordances in synteny were observed. Conclusion Genomic level analyses of potato and tomato confirm that gene sequence and gene order are conserved between these solanaceous species and that

  14. [Taxonomy and evolution of the genus Pratylenchoides (Nematoda: Pratylenchidae)].

    Science.gov (United States)

    Ryss, A Iu

    2007-01-01

    The amended diagnosis of the genus Pratylenchoides and list of its valid species with synonyms are given. All the efficient diagnostic characters are listed. Modern taxonomic standard for the description of Pratylenchoides species is proposed; it may be used also in taxonomic databases. Tabular and text keys for all species of the genus are given. Five following groups are considered within the genus Pratylenchoides. The group arenicola differs from other groups in the primitive adanal bursa type; the groups magnicauda, crenicauda, ritteri, and megalobatus differ from each other in the position of cardium along the body axis in relation to the pharyngeal gland nuclei, pharynx types are named according to the stages of its evolution from the primitive tylenchoid pharynx (cardium situated posteriorly) to the advanced hoplolaimoid one (cardium situated anteriorly). Diagnoses and species compositions of the groups are given. Basing on the matrix of species characters, the dendrogram has been generated for all species of Pratylenchoides and for all characters (UPGMA, distance, mean character difference, random, characters ordered). Taking in view that the PAUP software gives equal weights to all characters, including the most important ones which define the prognostic species groups, the separate dendrograms for each prognostic species group were generated using the same above mentioned tree parameters. On the base of the records of Pratylenchoides species the matrices of plant host ranges, geographic distribution, and preferred soil-climatic conditions were developed. The dendrograms of the faunal similarities were generated using these matrices, with conclusions on a possible origin and evolution of the genus. The genus evolved from the flood lands with swampy soils and prevalence of dicotyledons (herbaceous Lamiaceae and woody Salicaceae families) to the forest mainland communities with balanced humidity and predominance of herbaceous Poaceae and Fabaceae with woody

  15. Distribution of throughfall and stemflow in multi-strata agroforestry, perennial monoculture, fallow and primary forest in central Amazonia, Brazil

    Science.gov (United States)

    Schroth, Götz; Ferreira da Silva, Luciana; Wolf, Marc-Andree; Geraldes Teixeira, Wenceslau; Zech, Wolfgang

    1999-07-01

    The partitioning of rain water into throughfall, stemflow and interception loss when passing through plant canopies depends on properties of the respective plant species, such as leaf area and branch angles. In heterogeneous vegetation, such as tropical forest or polycultural systems, the presence of different plant species may consequently result in a mosaic of situations with respect to quantity and quality of water inputs into the soil. As these processes influence not only the water availability for the plants, but also water infiltration and nutrient leaching, the understanding of plant effects on the repartitioning of rain water may help in the optimization of land use systems and management practices. We measured throughfall and stemflow in a perennial polyculture (multi-strata agroforestry), monocultures of peach palm (Bactris gasipaes) for fruit and for palmito, a monoculture of cupuaçu (Theobroma grandiflorum), spontaneous fallow and primary forest during one year in central Amazonia, Brazil. The effect on rain water partitioning was measured separately for four useful tree species in the polyculture and for two tree species in the primary forest. Throughfall at two stem distances, and stemflow, differed significantly between tree species, resulting in pronounced spatial patterns of water input into the soil in the polyculture system. For two tree species, peach palm for fruit (Bactris gasipaes) and Brazil nut trees (Bertholletia excelsa), the water input into the soil near the stem was significantly higher than the open-area rainfall. This could lead to increased nutrient leaching when fertilizer is applied close to the stem of these trees. In the primary forest, such spatial patterns could also be detected, with significantly higher water input near a palm (Oenocarpus bacaba) than near a dicotyledonous tree species (Eschweilera sp.). Interception losses were 6·4% in the polyculture, 13·9 and 12·3% in the peach palm monocultures for fruit and for

  16. Extraction of Plant Physiological Status from Hyperspectral Signatures Using Machine Learning Methods

    Directory of Open Access Journals (Sweden)

    Daniel Doktor

    2014-12-01

    Full Text Available The machine learning method, random forest (RF, is applied in order to derive biophysical and structural vegetation parameters from hyperspectral signatures. Hyperspectral data are, among other things, characterized by their high dimensionality and autocorrelation. Common multivariate regression approaches, which usually include only a limited number of spectral indices as predictors, do not make full use of the available information. In contrast, machine learning methods, such as RF, are supposed to be better suited to extract information on vegetation status. First, vegetation parameters are extracted from hyperspectral signatures simulated with the radiative transfer model, PROSAIL. Second, the transferability of these results with respect to laboratory and field measurements is investigated. In situ observations of plant physiological parameters and corresponding spectra are gathered in the laboratory for summer barley (Hordeum vulgare. Field in situ measurements focus on winter crops over several growing seasons. Chlorophyll content, Leaf Area Index and phenological growth stages are derived from simulated and measured spectra. RF performs very robustly and with a very high accuracy on PROSAIL simulated data. Furthermore, it is almost unaffected by introduced noise and bias in the data. When applied to laboratory data, the prediction accuracy is still good (C\\(_{ab}\\: \\(R^2\\ = 0.94/ LAI: \\(R^2\\ = 0.80/BBCH (Growth stages of mono-and dicotyledonous plants : \\(R^2\\ = 0.91, but not as high as for simulated spectra. Transferability to field measurements is given with prediction levels as high as for laboratory data (C\\(_{ab}\\: \\(R^2\\ = 0.89/LAI: \\(R^2\\ = 0.89/BBCH: \\(R^2\\ = \\(\\sim\\0.8. Wavelengths for deriving plant physiological status based on simulated and measured hyperspectral signatures are mostly selected from appropriate spectral regions (both field and laboratory: 700–800 nm regressing on C\\(_{ab}\\ and 800–1300

  17. Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes.

    Science.gov (United States)

    Garg, Anchal; Agrawal, Lalit; Misra, Rajesh Chandra; Sharma, Shubha; Ghosh, Sumit

    2015-09-02

    Kalmegh (Andrographis paniculata) has been widely exploited in traditional medicine for the treatment of infectious diseases and health disorders. Ent-labdane-related diterpene (ent-LRD) specialized (i.e., secondary) metabolites of kalmegh such as andrographolide, neoandrographolide and 14-deoxy-11,12-didehydroandrographolide, are known for variety of pharmacological activities. However, due to the lack of genomic and transcriptomic information, underlying molecular basis of ent-LRDs biosynthesis has remained largely unknown. To identify candidate genes of the ent-LRD biosynthetic pathway, we performed comparative transcriptome analysis using leaf and root tissues that differentially accumulate ent-LRDs. De novo assembly of Illumina HiSeq2000 platform-generated paired-end sequencing reads resulted into 69,011 leaf and 64,244 root transcripts which were assembled into a total of 84,628 unique transcripts. Annotation of these transcripts to the Uniprot, Kyoto Encyclopedia of Genes and Genomes (KEGG) and Carbohydrate-Active Enzymes (CAZy) databases identified candidate transcripts of the ent-LRD biosynthetic pathway. These included transcripts that encode enzymes of the plastidial 2C-methyl-D-erythritol-4-phosphate pathway which provides C5 isoprenoid precursors for the ent-LRDs biosynthesis, geranylgeranyl diphosphate synthase, class II diterpene synthase (diTPS), cytochrome P450 monooxygenase and glycosyltransferase. Three class II diTPSs (ApCPS1, ApCPS2 and ApCPS3) that showed distinct tissue-specific expression profiles and are phylogenetically related to the dicotyledon ent-copalyl diphosphate synthases, are identified. ApCPS1, ApCPS2 and ApCPS3 encode for 832-, 817- and 797- amino acids proteins of 55-63 % identity, respectively. Spatio-temporal patterns of transcripts and ent-LRDs accumulation are consistent with the involvement of ApCPS1 in general (i.e., primary) metabolism for the biosynthesis of phytohormone gibberellin, ApCPS2 in leaf specialized ent

  18. Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

    Directory of Open Access Journals (Sweden)

    Dang Zhen-hua

    2013-01-01

    Full Text Available Abstract Background Reaumuria trigyna is an endangered small shrub endemic to desert regions in Inner Mongolia. This dicotyledonous recretohalophyte has unique morphological characteristics that allow it to tolerate the stress imposed by semi-desert saline soil. However, it is impossible to explore the mechanisms underlying this tolerance without detailed genomic information. Fortunately, newly developed high-throughput sequencing technologies are powerful tools for de novo sequencing to gain such information for this species. Results Two sequencing libraries prepared from control (C21 and NaCl-treated samples (T43 were sequenced using short reads sequencing technology (Illumina to investigate changes in the R. trigyna transcriptome in response to salt stress. Among 65340 unigenes, 35495 (52.27% were annotated with gene descriptions, conserved domains, gene ontology terms, and metabolic pathways with a cut-off E-value of 10-5. These included 44 Gene Ontology (GO terms, 119 Kyoto Encyclopedia of Genes and Genomes (KEGG pathways, and 25 Clusters of Orthologous Groups families. By comparing the transcriptomes from control and NaCl-treated plants, 5032 genes showed significantly differences in transcript abundance under salt stress (false discovery rate ≤ 0.001 and |log2Ratio| ≥ 1. These genes were significantly enriched in 29 KEGG pathways and 26 GO terms. The transcription profiles indicated that genes related to ion transport and the reactive oxygen species scavenging system were relevant to the morphological and physiological characteristics of this species. The expression patterns of 30 randomly selected genes resulted from quantitative real-time PCR were basically consistent with their transcript abundance changes identified by RNA-seq. Conclusions The present study identified potential genes involved in salt tolerance of R. trigyna. The globally sequenced genes covered a considerable proportion of the R. trigyna transcriptome. These data

  19. Modulation of Potassium Channel Activity in the Balance of ROS and ATP Production by Durum Wheat Mitochondria - An amazing defence tool against hyperosmotic stress

    Directory of Open Access Journals (Sweden)

    Daniela eTrono

    2015-12-01

    Full Text Available In plants, the existence of a mitochondrial potassium channel was firstly demonstrated about fifteen years ago in durum wheat as an ATP-dependent potassium channel (PmitoKATP. Since then, both properties of the original PmitoKATP and occurrence of different mitochondrial potassium channels in a number of plant species (monocotyledonous and dicotyledonous and tissues/organs (etiolated and green have been shown. Here, an overview of the current knowledge is reported; in particular, the issue of PmitoKATP physiological modulation is addressed. Similarities and differences with other potassium channels, as well as possible cross-regulation with other mitochondrial proteins (Plant Uncoupling Protein, Alternative Oxidase, Plant Inner Membrane Anion Channel are also described. PmitoKATP is inhibited by ATP and activated by superoxide anion, as well as by free fatty acids (FFAs and acyl-CoAs. Interestingly, channel activation increases electrophoretic potassium uptake across the inner membrane towards the matrix, so collapsing membrane potential (ΔΨ, the main component of the protonmotive force (Δp in plant mitochondria; moreover, cooperation between PmitoKATP and the K+/H+ antiporter allows a potassium cycle able to dissipate also ΔpH. Interestingly, ΔΨ collapse matches with an active control of mitochondrial reactive oxygen species (ROS production. Fully open channel is able to lower superoxide anion up to 35-fold compared to a condition of ATP-inhibited channel. On the other hand, ΔΨ collapse by PmitoKATP was unexpectedly found to not affect ATP synthesis via oxidative phosphorylation. This may probably occur by means of a controlled collapse due to ATP inhibition of PmitoKATP; this brake to the channel activity may allow a loss of the bulk phase Δp, but may preserve a non-classically detectable localized driving force for ATP synthesis. This ability may become crucial under environmental/oxidative stress. In particular, under moderate

  20. Biodiversidad de la flora del flanco oriental del Cordón del Plata (Luján de Cuyo, Mendoza, Argentina. Catálogo florístico Biodiversity of the flora of the eastern slope of the Cordón del Plata (Luján de Cuyo, Mendoza, Argentina

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    Eduardo Méndez

    2009-07-01

    Full Text Available La biodiversidad de la flora de la vertiente oriental del Cordón del Plata, Luján de Cuyo, Mendoza, Argentina se analizó a lo largo de un gradiente altitudinal, entre los 1200 y 4500 m s.n.m. Para ello se utilizó la lista florística de las especies de 89 comunidades vegetales distribuidas en 14 unidades de vegetación, 5 pisos de vegetación y 3 unidades fitogeográficas. Para cada especie se consideró su distribución en los grupos de comunidades vegetales, ubicación fitogeográfica, formas de vida, origen y registro de colección. La flora examinada contiene 667 especies vegetales que se corresponden con 338 géneros y 82 familias. Las familias están representadas por 8 Pteridophyta, 1 Gymnospermae y 73 Angiospermae, con 12 Monocotyledoneae y 61 Dicotyledoneae. Las familias mejor representadas son Asteraceae y Poaceae que tienen en conjunto 110 géneros y 249 especies. Los géneros Senecio, Baccharis y Adesmia son los más ricos en especies. Aproximadamente el 20 % de las especies son endémicas de Argentina. La flora del área se la compara con la del país, la provincia y la de otras áreas.Floristic catalogue. The floristic biodiversity of the eastern slope of the Cordón del Plata, Luján de Cuyo, Mendoza, Argentina, was studied along an altitudinal gradient, between 1200 and 4500 m a.s.l. For this we used a floristic list of 89 plant communities, distributed in 14 vegetation types, 5 vegetation belts and 3 phytogeographic units. For each of the species, its distribution in the groups of plant communities, phytogeographic position, life form, biogeographical origin, and registration of each collection was considered. The studied flora has 667 species, corresponding to 338 genera and 82 families. There are 8 Pteridophyta, 1 Gymnospermae, and 73 Angiospermae, of which 12 are Monocotyledons and 61 Dicotyledons. The most represented families are Asteraceae and Poaceae, which in total have 110 genera and 249 species. The most species

  1. A novel method for transmitting southern rice black-streaked dwarf virus to rice without insect vector.

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    Yu, Lu; Shi, Jing; Cao, Lianlian; Zhang, Guoping; Wang, Wenli; Hu, Deyu; Song, Baoan

    2017-08-15

    Southern rice black-streaked dwarf virus (SRBSDV) has spread from the south of China to the north of Vietnam in the past few years, and has severely influenced rice production. However, previous study of traditional SRBSDV transmission method by the natural virus vector, the white-backed planthopper (WBPH, Sogatella furcifera), in the laboratory, researchers are frequently confronted with lack of enough viral samples due to the limited life span of infected vectors and rice plants and low virus acquisition and inoculation efficiency by the vector. Meanwhile, traditional mechanical inoculation of virus only apply to dicotyledon because of the higher content of lignin in the leaves of the monocot. Therefore, establishing an efficient and persistent-transmitting model, with a shorter virus transmission time and a higher virus transmission efficiency, for screening novel anti-SRBSDV drugs is an urgent need. In this study, we firstly reported a novel method for transmitting SRBSDV in rice using the bud-cutting method. The transmission efficiency of SRBSDV in rice was investigated via the polymerase chain reaction (PCR) method and the replication of SRBSDV in rice was also investigated via the proteomics analysis. Rice infected with SRBSDV using the bud-cutting method exhibited similar symptoms to those infected by the WBPH, and the transmission efficiency (>80.00%), which was determined using the PCR method, and the virus transmission time (30 min) were superior to those achieved that transmitted by the WBPH. Proteomics analysis confirmed that SRBSDV P1, P2, P3, P4, P5-1, P5-2, P6, P8, P9-1, P9-2, and P10 proteins were present in infected rice seedlings infected via the bud-cutting method. The results showed that SRBSDV could be successfully transmitted via the bud-cutting method and plants infected SRBSDV exhibited the symptoms were similar to those transmitted by the WBPH. Therefore, the use of the bud-cutting method to generate a cheap, efficient, reliable supply of

  2. Reclassification of subspecies of Acidovorax avenae as A. Avenae (Manns 1905) emend., A. cattleyae (Pavarino, 1911) comb. nov., A. citrulli Schaad et al., 1978) comb. nov., and proposal of A. oryzae sp. nov.

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    Schaad, Norman W; Postnikova, Elena; Sechler, Aaron; Claflin, Larry E; Vidaver, Anne K; Jones, Jeffrey B; Agarkova, Irina; Ignatov, Alexander; Dickstein, Ellen; Ramundo, Bruce A

    2008-12-01

    The bacterium Acidovorax avenae causes disease in a wide range of economically important monocotyledonous and dicotyledonous plants, including corn, rice, watermelon, anthurium, and orchids. Genotypic and phenotypic relatedness among strains of phytopathogenic A. avenae subsp. avenae, A. avenae subsp. citrulli, A. avenae subsp. cattleyae and A. konjaci, as well as all other Acidovorax species, including A. facilis, the type strain of Acidovorax, was determined. The 16s rDNA sequencing confirmed previous studies showing the environmental species to be very distant from the phytopathogenic species. DNA/DNA reassociation assays on the different strains of A. avenae revealed four (A, B, C, and D) distinct genotypes. Taxon A included six A. avenae subsp. avenae strains from corn that had a mean reciprocal similarity of 81%; taxon B included six A. avenae subsp. avenae strains from rice that had a mean reciprocal similarity of 97%; taxon C contained 11 A. avenae subsp. citrulli strains from cucurbits (cantaloupe, watermelon, and pumpkin) that had a mean reciprocal similarity of 88%, and taxon D contained four A. avenae subsp. cattleyae strains from orchids that had a mean similarity of 98%. The mean reciprocal relatedness between taxa A, B, C, and D was less than 70%. Sequence analysis of 16S rDNA and the 16S-23S rDNA internally transcribed spacer region, as well as AFLP analysis, revealed the same four taxa. All four were easily differentiated phenotypically from each other and from all other recognized Acidovorax species. Strains of A. avenae did not contain 3-hydroxyoctanoic acid, which was found in all other species. On the basis of these and previous genetic and phenotypic results, we propose an emendation of the species A. avenae. A. avenae subsp. citrulli (C strains) and A. avenae subsp. cattleyae (D strains) should be elevated to species rank as A. citrulli and A. cattleyae, respectively. We further propose a new taxon for the B strains, A. oryzae sp. nov. with

  3. Transcript mapping of Cotton leaf curl Burewala virus and its cognate betasatellite, Cotton leaf curl Multan betasatellite

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    Akbar Fazal

    2012-10-01

    Full Text Available Abstract Background Whitefly-transmitted geminiviruses (family Geminiviridae, genus Begomovirus are major limiting factors for the production of numerous dicotyledonous crops throughout the warmer regions of the world. In the Old World a small number of begomoviruses have genomes consisting of two components whereas the majority have single-component genomes. Most of the monopartite begomoviruses associate with satellite DNA molecules, the most important of which are the betasatellites. Cotton leaf curl disease (CLCuD is one of the major problems for cotton production on the Indian sub-continent. Across Pakistan, CLCuD is currently associated with a single begomovirus (Cotton leaf curl Burewala virus [CLCuBuV] and the cotton-specific betasatellite Cotton leaf curl Multan betasatellite (CLCuMuB, both of which have recombinant origins. Surprisingly, CLCuBuV lacks C2, one of the genes present in all previously characterized begomoviruses. Virus-specific transcripts have only been mapped for few begomoviruses, including one monopartite begomovirus that does not associate with betasatellites. Similarly, the transcripts of only two betasatellites have been mapped so far. The study described has investigated whether the recombination/mutation events involved in the evolution of CLCuBuV and its associated CLCuMuB have affected their transcription strategies. Results The major transcripts of CLCuBuV and its associated betasatellite (CLCuMuB from infected Nicotiana benthamiana plants have been determined. Two complementary-sense transcripts of ~1.7 and ~0.7 kb were identified for CLCuBuV. The ~1.7 kb transcript appears similar in position and size to that of several begomoviruses and likely directs the translation of C1 and C4 proteins. Both complementary-sense transcripts can potentially direct the translation of C2 and C3 proteins. A single virion-sense transcript of ~1 kb, suitable for translation of the V1 and V2 genes was identified. A predominant

  4. The Vascular Flora of Rarău Massif (Eastern Carpathians, Romania. Note I

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    Adrian Oprea

    2012-10-01

    Full Text Available The present study is concerned with the flora of the Rarău Massif, an area lying in the northeastern part of Romania, nearby the town of Câmpulung Moldovenesc. This study attempt to list all the vascular plants (i.e. ferns, conifers, and flowering plants from the whole area of Rarău Massif. Till now, there are published several papers on this area, but no paper deals with the whole surface of Rarău Massif. The research was carried out between 2000 to 2011. During the study period, 1377 taxa (1089 species and 288 subspecies, belonging to 95 families and 411 genera; 43 of the species belong to Pteridophytes, 8 belongs to Gymnosperms, and 1038 belongs to Angiosperms (835 Dicotyledons, 203 Monocotyledons subdivisions. The largest families (in terms of the number of species and subspecies included are: Asteraceae (167, Poaceae (78, Brassicaceae (53, Rosaceae and Lamiaceae (50, Scrophulariaceae and Cyperaceae (47, Caryophyllaceae and Ranunculaceae (42. The highest number of species, of a certain genus, is like the next: Carex L. (39, Centaurea L. (25, Hieracium L. (21, Festuca L. (19, Senecio L. (12, Cirsium, Pilosella, and Poa (11, etc. Since the flora of the area is analysed according to Raunkiaer’s life forms, the results are as follows: Hemicryptophytes 605 species (H=55.6%, Cryptophytes (also called Geophytes 137 species (G=12.6%, Therophytes 120 species (11.0%, Phanerophytes 84 species (Ph=7.7%, Chamaephytes 57 species (Ch=5.2%, Hemitherophytes 77 species (Ht=7.1%, Helo-hydatophytes 8 species (HH=0.7%, and Epiphytes 1 species (Ep=0.1%. The phytogeographic elements are the next ones: European=375 species (36.6%, Eurasian=349 species (34.0%, Circumboreal=148 species (14.8%, Cosmopolite=37 species (3.6%, Carpathians=31 species (3.0%, Pontics=19 species (1.9%, Mediterranean-submediterrannean=11 species (1.1%, and Adventitious=2 species (0.2%. The number of endemic and near-endemic taxa (species and subspecies within the study area is 53 (5.2%.

  5. A checklist of the plants of the forests and grasslands in the Weza district, southern KwaZulu-Natal and a review of their status in the Red Data List

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    Graham R.H. Grieve

    2015-09-01

    Full Text Available Eastern mistbelt forests are naturally fragmented forests with grassland which occur from the Eastern Cape to KwaZulu-Natal, South Africa. These were heavily logged by colonial settlers and continue to be harvested despite being protected. Consequently we documented a checklist of the plants of the forests and grasslands in the Weza district (3029DA WEZA, southern KwaZulu-Natal, including Ngeli Forest and nearby indigenous forest patches to highlight their biodiversity status and need for conservation. We also reviewed their status in the Red Data List. Of the 1554 records included in this summary of plant species for the Weza district, there were 6 lichens (0.4%, 46 bryophytes (3.0%, 58 pteridophytes (3.7%, 6 gymnosperms (0.4% and the remaining 1424 species angiosperms (92.5%. Of the angiosperms, 27.3% were monocotyledons and 72.7% were dicotyledons. The most species-rich family was Asteraceae (239 species followed by Fabaceae (115 species, Liliaceae (used for purposes of comparison against older studies – 89 species, Orchidaceae (89 species, Iridaceae (59 species, Poaceae (58 species, Asclepidaceae (again used for purposes of comparison against older studies – 57 species, Scrophulariaceae (42 species, Euphorbiaceae (32 species, Lamiaceae (32 species and Rubiaceae (27 species. These 10 families each comprised more than 2% of the species in the list. Together they contributed 55% of the angiosperm species and 34.1% of the angiosperm genera. The biodiversity and conservation value of the study area are conserved pockets of eastern mistbelt forest, Drakensberg foothill moist grassland and mistbelt grassland. More than 4% of the species are under some degree of threat, as was evidenced by the number of species regarded as endangered (5, vulnerable (18, near threatened (10, critically rare (1, rare (20 or declining (11 amongst the 1554 species covered in the list. Conservation implications: In terms of taxa under some degree of threat, number of

  6. Analysis and functional annotation of expressed sequence tags (ESTs from multiple tissues of oil palm (Elaeis guineensis Jacq.

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    Lee Weng-Wah

    2007-10-01

    Full Text Available Abstract Background Oil palm is the second largest source of edible oil which contributes to approximately 20% of the world's production of oils and fats. In order to understand the molecular biology involved in in vitro propagation, flowering, efficient utilization of nitrogen sources and root diseases, we have initiated an expressed sequence tag (EST analysis on oil palm. Results In this study, six cDNA libraries from oil palm zygotic embryos, suspension cells, shoot apical meristems, young flowers, mature flowers and roots, were constructed. We have generated a total of 14537 expressed sequence tags (ESTs from these libraries, from which 6464 tentative unique contigs (TUCs and 2129 singletons were obtained. Approximately 6008 of these tentative unique genes (TUGs have significant matches to the non-redundant protein database, from which 2361 were assigned to one or more Gene Ontology categories. Predominant transcripts and differentially expressed genes were identified in multiple oil palm tissues. Homologues of genes involved in many aspects of flower development were also identified among the EST collection, such as CONSTANS-like, AGAMOUS-like (AGL2, AGL20, LFY-like, SQUAMOSA, SQUAMOSA binding protein (SBP etc. Majority of them are the first representatives in oil palm, providing opportunities to explore the cause of epigenetic homeotic flowering abnormality in oil palm, given the importance of flowering in fruit production. The transcript levels of two flowering-related genes, EgSBP and EgSEP were analysed in the flower tissues of various developmental stages. Gene homologues for enzymes involved in oil biosynthesis, utilization of nitrogen sources, and scavenging of oxygen radicals, were also uncovered among the oil palm ESTs. Conclusion The EST sequences generated will allow comparative genomic studies between oil palm and other monocotyledonous and dicotyledonous plants, development of gene-targeted markers for the reference genetic map

  7. Cell wall matrix polysaccharide distribution and cortical microtubule organization: two factors controlling mesophyll cell morphogenesis in land plants.

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    Sotiriou, P; Giannoutsou, E; Panteris, E; Apostolakos, P; Galatis, B

    2016-03-01

    This work investigates the involvement of local differentiation of cell wall matrix polysaccharides and the role of microtubules in the morphogenesis of mesophyll cells (MCs) of three types (lobed, branched and palisade) in the dicotyledon Vigna sinensis and the fern Asplenium nidus. Homogalacturonan (HGA) epitopes recognized by the 2F4, JIM5 and JIM7 antibodies and callose were immunolocalized in hand-made leaf sections. Callose was also stained with aniline blue. We studied microtubule organization by tubulin immunofluorescence and transmission electron microscopy. In both plants, the matrix cell wall polysaccharide distribution underwent definite changes during MC differentiation. Callose constantly defined the sites of MC contacts. The 2F4 HGA epitope in V. sinensis first appeared in MC contacts but gradually moved towards the cell wall regions facing the intercellular spaces, while in A. nidus it was initially localized at the cell walls delimiting the intercellular spaces, but finally shifted to MC contacts. In V. sinensis, the JIM5 and JIM7 HGA epitopes initially marked the cell walls delimiting the intercellular spaces and gradually shifted in MC contacts, while in A. nidus they constantly enriched MC contacts. In all MC types examined, the cortical microtubules played a crucial role in their morphogenesis. In particular, in palisade MCs, cortical microtubule helices, by controlling cellulose microfibril orientation, forced these MCs to acquire a truncated cone-like shape. Unexpectedly in V. sinensis, the differentiation of colchicine-affected MCs deviated completely, since they developed a cell wall ingrowth labyrinth, becoming transfer-like cells. The results of this work and previous studies on Zea mays (Giannoutsou et al., Annals of Botany 2013; 112: : 1067-1081) revealed highly controlled local cell wall matrix differentiation in MCs of species belonging to different plant groups. This, in coordination with microtubule-dependent cellulose microfibril

  8. Altered Gene Expression in Three Plant Species in Response to Treatment with Nep1, a Fungal Protein That Causes Necrosis

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    Keates, Sarah E.; Kostman, Todd A.; Anderson, James D.; Bailey, Bryan A.

    2003-01-01

    Nep1 is an extracellular fungal protein that causes necrosis when applied to many dicotyledonous plants, including invasive weed species. Using transmission electron microscopy, it was determined that application of Nep1 (1.0 μg mL–1, 0.1% [v/v] Silwet-L77) to Arabidopsis and two invasive weed species, spotted knapweed (Centaurea maculosa) and dandelion (Taraxacum officinale), caused a reduction in the thickness of the cuticle and a breakdown of chloroplasts 1 to 4 h after treatment. Membrane breakdown was most severe in cells closest to the surface of application. Differential display was used to isolate cDNA clones from the three species showing differential expression in response to Nep1 treatment. Differential gene expression was observed for a putative serpin (CmSER-1) and a calmodulin-like (CmCAL-1) protein from spotted knapweed, and a putative protein phosphatase 2C (ToPP2C-1) and cytochrome P-450 (ToCYP-1) protein from dandelion. In addition, differential expression was observed for genes coding for a putative protein kinase (AtPK-1), a homolog (AtWI-12) of wound-induced WI12, a homolog (AtLEA-1) of late embryogenesis abundant LEA-5, a WRKY-18 DNA-binding protein (AtWRKY-18), and a phospholipase D (AtPLD-1) from Arabidopsis. Genes showing elevated mRNA levels in Nep1-treated (5 μg mL–1, 0.1% [v/v] Silwet-L77) leaves 15 min after Nep1 treatment included CmSER-1 and CmCAL-1 for spotted knapweed, ToCYP-1 and CmCAL-1 for dandelion, and AtPK-1, AtWRKY-18, AtWI-12, and AtLEA-1 for Arabidopsis. Levels of mRNA for AtPLD-1 (Arabidopsis) and ToPP2C-1 (dandelion) decreased rapidly in Silwet-l77-treated plants between 15 min and 4 h of treatment, but were maintained or decreased more slowly over time in Nep1-treated (5 μg mL–1, 0.1% [v/v] Silwet-L77) leaves. In general, increases in mRNA band intensities were in the range of two to five times, with only ToCYP-1 in dandelion exceeding an increase of 10 times. The identified genes have been shown to be involved

  9. Flowering catch crops used as forage plants for dairy cows: influence on fatty acids and tocopherols in milk.

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    Kälber, T; Meier, J S; Kreuzer, M; Leiber, F

    2011-03-01

    The effect of several flowering dicotyledonous catch crop plants (dicots) on milk fat quality in cows was investigated to test the hypothesis that their phenolic compounds may inhibit ruminal biohydrogenation and thus enhance the transfer to milk of intact, plant-derived polyunsaturated fatty acids. Berseem clover (Trifolium alexandrinum), buckwheat (Fagopyrum esculentum), and phacelia (Phacelia tanacetifolia) were sown in mixture with ryegrass (Lolium multiflorum; intended biomass proportion of 0.2) on 1ha. For comparison, nonflowering chicory (Cichorium intybus, also sown in mixture with ryegrass) and pure ryegrass were cultivated. Realized biomass proportions (wet weight) were 91% for berseem clover, 69% for buckwheat, 54% for phacelia, and 51% for chicory. At the start of flowering (or from d 47 after sowing onward), cultures were harvested daily and fed for 20 d ad libitum to groups of 6 midlactation cows each. Additionally, 1 kg each of energy and protein concentrate and pure ryegrass hay were fed. Individual intake and milk yield of the cows were measured daily. Milk samples were obtained twice daily 5 d before and from 11 to 20 d after the start of treatment feeding. Feed samples were drawn twice a week from the fresh feeds. Apart from standard traits, feeds and milk were analyzed for fatty acids, tocopherols, and phenolic fractions. Only a few substantial treatment effects on intake and performance were observed. All diets based on dicots increased α-linolenic acid (ALA) concentrations in milk fat compared with the ryegrass diet even though the corresponding swards were not generally richer in ALA. The highest ALA concentration in milk fat (1.3 g/100g of fatty acids) occurred with the berseem clover diet. Transfer rate of ALA from feed to milk was highest with the buckwheat diet (0.09) and lowest with ryegrass (0.05). This was congruent with the differences in total extractable phenols, being high in the buckwheat sward (2.6% of dry matter) and low in the

  10. Ethnomedicinal plants used by local inhabitants of Jakholi block, Rudraprayag district, western Himalaya, India.

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    Singh, Ankit; Nautiyal, Mohan C; Kunwar, Ripu M; Bussmann, Rainer W

    2017-08-24

    Ethnomedicinal knowledge of the Indian Himalayas is very interesting because of the wide range of medicinal plants used in traditional medical practice. However, there is a danger of knowledge being lost because the knowledge sharing is very limited and passed on orally. The present study is the first ethnomedicinal study in Jakholi area of Rudraprayag district of Northwestern India. The aim of present study was to identify traditional medicinal plants used by the inhabitants to treat different ailments and document the associated knowledge of these medicinal plants. An ethnomedicinal survey was carried out in 72 of 133 villages and alpine pastures of Jakholi block (800-4000 m asl). Door to door surveys and group discussions, applying semi-structured questionnaires were conducted with traditional healers and villagers in local language (Garhwali). Informant Consensus Factor (ICF) was computed to analyse collected ethnomedicinal data. A total of 78 species (Gymnosperms 3 species, Monocotyledons 12 and 63 Dicotyledons) belonging to 73 genera in 46 families were identified to treat 14 different ailments categories. Most dominant family is Asteraceae (5 species). In disease treated categories, Diseases of the skin (DE) have the highest proportion (29.55%) followed by Gastro- intestinal disorder (GA) (25.89%). The most life form of plants used was herb (56%) followed by tree (23%) while root was the most frequently used part of the plants and the traditional preparation was mainly applied in the form of paste (37%). The highest ICF value (0.99) was found for hair ailments (HA) followed ophthalmologic complaints (OP) and mental afflictions (MA) (0.98). The present study provides valuable information about traditional knowledge of medicinal plants of Jakholi Block in the Northwestern Himalaya, India. Local communities still possess large traditional knowledge of plants and their therapeutic uses and that the link of that traditional knowledge to modern research could be

  11. Ultrastructure of pea and cress root statocytes exposed to high gradient magnetic field

    Science.gov (United States)

    Belyavskaya, N. A.; Chernishov, V. I.; Polishchuk, O. V.; Kondrachuk, A. V.

    As it was demonstrated by Kuznetsov & Hasenstein (1996) the high gradient magnetic field (HGMF) can produce a ponderomotive force that results in displacements of amyloplasts and causes the root response similar to the graviresponse. It was suggested that the HGMF could allow to imitate the effects of gravity in microgravity and/or change them in laboratory conditions correspondingly, as well as to study statolith-related processes in graviperception. Therefore, the correlation between the direction of the ponderomotive force resulting in statolith displacements and the direction of the HGMF-induced plant curvature can be the serious argument to support this suggestion and needs the detailed ultrastructural analysis. Seeds of dicotyledon Pisum sativum L. cv. Damir-2 and monocotyledon Lepidium sativum L. cv. P896 were soaked and grown in a vertical position on moist filter paper in chambers at room temperature. Tips of primary roots of vertical control, gravistimulated and exposed to HGMF seedlings were fixed for electron microscopy using conventional techniques. At ultrastructural level, we observed no significant changes in the volume of the individual statocytes or amyloplasts, relative volumes of cellular organelles (except vacuoles), number of amyloplasts per statocyte or surface area of endoplasmic reticulum. No consistent contacts between amyloplasts and any cellular structures, including plasma membrane, were revealed at any stage of magneto- and gravistimulation. By 5 min after onset of magnetostimulation, amyloplasts were located along cell wall distant from magnets. In HGMF, the locations of amyloplasts in columella cells were similar to those in horizontally-oriented roots up to 1 h stimulation. In the latter case, there were sometimes cytoplasmic spherical bodies with a dense vesicle-rich cytoplasm in pea statocytes, which were absent in seedlings exposed to HGMF. In cress root statocytes, both gravi- and magnetostimulation were found to cause the

  12. Ethnobotany of medicinal plants among the communities of Alpine and Sub-alpine regions of Pakistan.

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    Kayani, Sadaf; Ahmad, Mushtaq; Sultana, Shazia; Khan Shinwari, Zabta; Zafar, Muhammed; Yaseen, Ghulam; Hussain, Manzoor; Bibi, Tahira

    2015-04-22

    To best of our knowledge it is first quantitative ethno-botanical study from Alpine and Sub-alpine, Western Himalaya of Pakistan. The study aims to report, compare the uses and highlight the ethno-botanical significance of medicinal plants for treatment of various diseases. A total of 290 (278 males and 12 females) informants including 14 Local Traditional Healers (LTHs) were interviewed. Information was collected using semi-structured interviews, analyzed and compared by quantitative ethno-botanical indices such as Informant Consensus Factor (ICF), Relative frequency of citation (RFC), use value (UV), Fidelity Level (FL) and Jaccard index (JI). A total of 125 plant species (Gymnosperms 7 species, Monocotyledons 2 and 116 Di-cotyledons) belonging to 41 families are collected, identified and ethno-botanically assessed. The most dominant family is Ranunculaceae (20 species) followed by Rosaceae (14 species). In diseases treated, gastrointestinal tract (GIT) diseases have highest proportion (27.5%) followed by respiratory diseases (20%) in the mountain communities. The most dominant life form of plants used is herbs (78%) followed by shrubs (19%) while the most commonly used plant parts are leaves (44 reports) followed by underground part, the roots (37 reports). The highest ICF (0.68) is found for ear, nose and eye disease category followed by respiratory disorders (0.46). There are 15 medicinal plants having 100% FL. Use value (UV) and Relative frequency of citation (RFC) range from 0.03 to 0.53 and 0.04 to 0.23 respectively. In comparison, maximum similarity index is found in the studies with JI 19.52 followed by 17.39. Similarity percentage of plant uses range from 1.69% to 19.52% while dissimilarity percentage varies from 0% to 20%. The Alpine and Sub-alpine regions of Pakistan are rich in medicinal plants and still need more research exploration. On the other hand, ethno-botanical knowledge in study areas is decreasing day by day due to high emigration rates

  13. Changes in wood density, wood anatomy and hydraulic properties of the xylem along the root-to-shoot flow path in tropical rainforest trees.

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    Schuldt, Bernhard; Leuschner, Christoph; Brock, Nicolai; Horna, Viviana

    2013-02-01

    It is generally assumed that the largest vessels are occurring in the roots and that vessel diameters and the related hydraulic conductance in the xylem are decreasing acropetally from roots to leaves. With this study in five tree species of a perhumid tropical rainforest in Sulawesi (Indonesia), we searched for patterns in hydraulic architecture and axial conductivity along the flow path from small-diameter roots through strong roots and the trunk to distal sun-canopy twigs. Wood density differed by not more than 10% across the different flow path positions in a species, and branch and stem wood density were closely related in three of the five species. Other than wood density, the wood anatomical and xylem hydraulic traits varied in dependence on the position along the flow path, but were unrelated to wood density within a tree. In contrast to reports from conifers and certain dicotyledonous species, we found a hump-shaped variation in vessel diameter and sapwood area--specific conductivity along the flow path in all five species with a maximum in the trunk and strong roots and minima in both small roots and twigs; the vessel size depended on the diameter of the organ. This pattern might be an adaptation to the perhumid climate with a low risk of hydraulic failure. Despite a similar mean vessel diameter in small roots and twigs, the two distal organs, hydraulically weighted mean vessel diameters were on average 30% larger in small roots, resulting in ∼ 85% higher empirical and theoretical specific conductivities. Relative vessel lumen area in percent of sapwood area decreased linearly by 70% from roots to twigs, reflecting the increase in sclerenchymatic tissue and tracheids in acropetal direction in the xylem. Vessel size was more closely related to the organ diameter than to the distance along the root-to-shoot flow path. We conclude that (i) the five co-occurring tree species show convergent patterns in their hydraulic architecture despite different growth

  14. Comunidades de malezas en cultivos hortícolas en la Provincia de Neuquén (Argentina Weed's communities in vegetable crops in Neuquen Province, (Argentina

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    María Beatriz Cerazo

    2008-07-01

    them included in the class Artemisietea vulgaris. Eighty nine species were tacked stock for the autumn -winter and spring - summer periods. There was a clear predominance of Dicotyledonous ( 79 % over Monocotyledonous and a predominance of annual weeds (66% over perennial weeds.

  15. Myxomycetes da Chapada do Araripe (Crato - CE, Brasil Myxomycetes from Chapada do Araripe (Crato, CE, Brazil

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    Laise de Holanda Cavalcanti

    1998-12-01

    Full Text Available Foi efetuado um levantamento dos Myxomyeetes ocorrentes em área de floresta no município do Crato, CE (7º13'53" S; 39º24'28'' W; Alt. 422m, assinalando-se as seguintes famílias e gêneros: Ceratiomyxaceae (Ceratiomyxa, 1 sp.; Cribrariaceae (Cribraria, lsp., Dictydium, 1 sp.; Didymiaceae (Didymium, 2sp.; Enteridiaceae (Dicrydiaethalium, 1sp.; Physaraceae (Badhamia, 2sp., Fuligo, 2sp., Physarum, 5sp.; Steinonitaceae (Comatricha, 3sp., Sfemonitis, 6sp.; Trichiaceae (Arcyria, 3sp., Hemitrichia, 2sp., Periclwena, 1 sp.- Constatou-se preferência das espécies para frutificar em troncos mortos de dicotiledôneas, seguindo-se restos de palmeiras e folhedo. O levantamento eleva para 30 o número de espécies referidas para o Ceará. Uma família e 19 espécies são novos registros para o Estado e Arcyria magna var. rosea Rex é nova referência para o Brasil. São apresentados comentários, chave de identificação e distribuição geográfica das espécies no Nordeste do Brasil.A survey on Myxomycetes was made in the woods of Crato Municipality. State of Ceará, Brazil (7º13'53" S; 39º24,28" W; Alt. 422m. when the following families and genera were registered: Ceratiomyxaceae (Ceratiomyxa, 1 sp.; Cribrariaceae (Cribraria, 1 sp., Dictydium. 1 sp.; Didymiaceae (Didymium, 2sp.; Enteridiaceae Dictydiaethalium, 1 sp.; Physaraceae (Badhamia. 2sp., Fuligo, 2sp., Physarum, 5sp.; Stemonitaceae Comatricha, 3sp., Stemonitis, 6sp.; Trichiaceae (Arcyria, 3sp., Hemitrichia, 2sp., Perichaena, lsp..The species sporulated mostly on dead dicotyledones wood, followed by monocotyledones (Arecaceae debris and litter. The survey raises the number of registers referred to the State of Ceará to 30 species. One family and 19 species are new records for that State while Arcyria magna var. rosea Rex represents a new record for Brazil. Key for the species, comments and geographical distribution in Northeast Brazil arc presented.

  16. Differential effectiveness of Serratia plymuthica IC1270-induced systemic resistance against hemibiotrophic and necrotrophic leaf pathogens in rice

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    Höfte Monica M

    2009-01-01

    Full Text Available Abstract Background Induced resistance is a state of enhanced defensive capacity developed by a plant reacting to specific biotic or chemical stimuli. Over the years, several forms of induced resistance have been characterized, including systemic acquired resistance, which is induced upon localized infection by an avirulent necrotizing pathogen, and induced systemic resistance (ISR, which is elicited by selected strains of nonpathogenic rhizobacteria. However, contrary to the relative wealth of information on inducible defense responses in dicotyledoneous plants, our understanding of the molecular mechanisms underlying induced resistance phenomena in cereal crops is still in its infancy. Using a combined cytomolecular and pharmacological approach, we analyzed the host defense mechanisms associated with the establishment of ISR in rice by the rhizobacterium Serratia plymuthica IC1270. Results In a standardized soil-based assay, root treatment with IC1270 rendered foliar tissues more resistant to the hemibiotrophic pathogen Magnaporthe oryzae, causal agent of the devastating rice blast disease. Analysis of the cytological and biochemical alterations associated with restriction of fungal growth in IC1270-induced plants revealed that IC1270 primes rice for enhanced attacker-induced accumulation of reactive oxygen species (ROS and autofluorescent phenolic compounds in and near epidermal cells displaying dense cytoplasmic granulation. Similar, yet more abundant, phenotypes of hypersensitively dying cells in the vicinity of fungal hyphae were evident in a gene-for-gene interaction with an avirulent M. oryzae strain, suggesting that IC1270-inducible ISR and R protein conditioned effector-triggered immunity (ETI target similar defense mechanisms. Yet, this IC1270-inducible ISR response seems to act as a double-edged sword within the rice defense network as induced plants displayed an increased vulnerability to the necrotrophic pathogens Rhizoctonia

  17. In silico Coding Sequence Analysis of Walnut GAI and PIP2 Genes and Comparison with Different Plant Species

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    Mahdi Mohseniazar

    2017-02-01

    Full Text Available Introduction: Dwarfism is one of the important traits in breeding of crops and horticulture plants. A dwarfing rootstock will produce trees with 15-50% of standard trees size. In modern intensive fruit tree orchards, dwarfing rootstocks are commonly used to reduce trees size, enabling high-density planting and easy management, thus achieving higher yield. Trees on dwarfing rootstocks can also exhibit other economically important traits, such as precocious flowering, increased yield and increased disease resistance. Dwarf rootstocks have been extensively studied and released in stone and pome fruits, because of presence of genetic materials and the simplicity of budding methods. Control of tree size using genetically dwarf rootstocks for achievement to higher density and mechanized orchard systems is now very important for walnut production in the world especially in Iran. Many different genes can be involved in appear of this. Mutations in GAI and PIP2 genes cause dwarf trait by two different mechanisms in some plant species. In this case, we study in silico analysis of GAI and PIP2 genes consist of conserved sequences and domains, exon and intron number, function of their proteins, targeting, secondary and tertiary structure, and post translational modification. Materials and methods: The GAI and PIP2 mRNA and protein sequences (FASTA format belonging to 17 monocotyledon and dicotyledon were downloaded from NCBI (http://www.ncbi.nlm.nih.gov accessed, on September 2014. Several online web services and software were used for analysis of GAI and PIP2 mRNA and Proteins in plants. Comparative and bioinformatics analyses of PIP2 and GAI proteins were performed online at two websites NCBI (http://www.ncbi.nih.gov and EXPASY (http://expasy.org/tools. Molecular Evolutionary Genetics Analysis (MEGA; version 4 program and CLUSTAL-W with default parameters were used for multiple alignments of sequences. The phylogenetic analysis of GAI and PIP2 protein was

  18. Composição florística das plantas daninhas na cultura de guaraná (Paullinia cupana, no estado do Amazonas Floristic composition of weeds in guarana (Paullinia cupana crop in Amazonas, Brazil

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    S.M.F. Albertino

    2004-09-01

    Urucará located in the state of Amazonas, Brazil. Samples of weeds were taken from guarana growing areas in the five counties and identified by class, family and species. A total of 14,707 individual plants were collected and grouped into 40 families and 87 species,as follows: 70 Dicotyledonous, 13 Monocotyledonous and 4 Pteridophyts. The Dicotyledonous class presented the largest number of families and the monocotyledonous the largest number of individual plants, except in Maués and Iranduba. The number of Pteridophyts was inexpressive in all the counties. The Poaceae and Asteraceae families presented the largest number of species. Poaceae was found in all the counties, presenting the largest number of species in Maues. Panicum pilosum was the species with the largest number of individual plants, frequency, density and value of importance index, while Panicum laxum presented an expressive number of species in Urucará and Iranduba. Scleria malaleuca presented an expressive number in Coari and Chamaesyce hirta in Maués. Homolepis aturensis, Paspalum conjugatum and Spermacoce capitata were found in the five counties. The largest species diversity was found in Maues whereas the largest number of individual plants was found in Coari. The largest similarity index was found between Iranduba and Presidente Figueiredo (45% and the smallest between Iranduba and Coari (21.43%.

  19. Plantas invasoras em sistemas agroflorestais com cupuaçuzeiro no município de Presidente Figueiredo (Amazonas, Brasil Weedy plants in agroforestry systems with cupuassu in the municipality of Presidente Figueiredo (Amazonas, Brazil

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    Gladys Ferreira de Sousa

    2003-01-01

    . This work have undertaken a survey and phytosociological analysis of some aspects of weed species that occur in agroforestry systems with cupuassu. The treatments consisted of three crops arrangements (cassava+fruit trees; annuals crops+fruit trees; passion fruit+fruit trees, and three fertilizer management (NPK+OM, with Phosphorus and Phosphorus+leguminous. Three harvests of weed plants were accomplished, being six samples of 0,25 m² per plot. The identification of the species of the weed plants were carried out in the laboratory. The 55 weed species identified were distributed in 23 botanical families, being 43 of dicotyledonous species, 11 of monocotyledonous, and one of pteridophyta. The families Poaceae (monocotyledonous and Asteraceae (dicotyledonous were the most frequent and with large number of individuals. The most frequent species and with large number of plants per m² were Paspalum conjugatum P.J. Bergius (area A and Homolepis aturensis (Kunth Chase (area B of the Poaceae family; Ageratum conyzoides L. of the Asteraceae family, presented the largest density. The similarity coefficients varied among the areas studied, being the largest indexes observed in the treatments that received fertilizers with organic matter (NPK+OM, particularly in the system cassava+fruit trees. The agricultural practices and the soil and crops management systems, had a great influence to the flora composition and in the weed plants communities size in each local area. The number of monocotyledonous was smaller in the treatment with NPK+OM than in the other treatments.

  20. In silico Coding Sequence Analysis of Walnut GAI and PIP2 Genes and Comparison with Different Plant Species

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    Mahdi Mohseniazar

    2017-09-01

    Full Text Available Introduction: Dwarfism is one of the important traits in breeding of crops and horticulture plants. A dwarfing rootstock will produce trees with 15-50% of standard trees size. In modern intensive fruit tree orchards, dwarfing rootstocks are commonly used to reduce trees size, enabling high-density planting and easy management, thus achieving higher yield. Trees on dwarfing rootstocks can also exhibit other economically important traits, such as precocious flowering, increased yield and increased disease resistance. Dwarf rootstocks have been extensively studied and released in stone and pome fruits, because of presence of genetic materials and the simplicity of budding methods. Control of tree size using genetically dwarf rootstocks for achievement to higher density and mechanized orchard systems is now very important for walnut production in the world especially in Iran. Many different genes can be involved in appear of this. Mutations in GAI and PIP2 genes cause dwarf trait by two different mechanisms in some plant species. In this case, we study in silico analysis of GAI and PIP2 genes consist of conserved sequences and domains, exon and intron number, function of their proteins, targeting, secondary and tertiary structure, and post translational modification. Materials and methods: The GAI and PIP2 mRNA and protein sequences (FASTA format belonging to 17 monocotyledon and dicotyledon were downloaded from NCBI (http://www.ncbi.nlm.nih.gov accessed, on September 2014. Several online web services and software were used for analysis of GAI and PIP2 mRNA and Proteins in plants. Comparative and bioinformatics analyses of PIP2 and GAI proteins were performed online at two websites NCBI (http://www.ncbi.nih.gov and EXPASY (http://expasy.org/tools. Molecular Evolutionary Genetics Analysis (MEGA; version 4 program and CLUSTAL-W with default parameters were used for multiple alignments of sequences. The phylogenetic analysis of GAI and PIP2 protein was

  1. Hydrogen isotope ratios of terrestrial leaf wax n-alkanes from the Tibetan Plateau: Controls on apparent enrichment factors, effect of vapor sources and implication for altimetry

    Science.gov (United States)

    Zhang, Xiaolong; Xu, Baiqing; Günther, Franziska; Mügler, Ines; Lange, Markus; Zhao, Huabiao; Li, Jiule; Gleixner, Gerd

    2017-08-01

    Empirical evidence suggested that the altitudinal dependence of hydrogen isotope ratios of leaf wax n-alkanes (δDwax) can be used to estimate paleoaltitudinal changes. However, the application of δDwax-based paleoaltimetry remains difficult, as the impacts of evaporative, transpirative and biosynthetic processes on hydrogen isotope fractionations in changing environments and the influence of likely changing water vapor sources are not well explored. For this study, we sampled stream waters, soils and plant leaves along two transects spanning large gradients of altitude, precipitation amount, vapor source, temperature and vegetation type on the Tibetan Plateau (TP). δD values of stream water (as an approximation for δDp), soil water (δDsw) and plant leaf water (δDlw) as well as leaf wax n-alkanes were measured in order to quantify isotopic fractionations in the formation of leaf waxes. Most interestingly, we found a strong negative correlation between the evapotranspirative enrichment of leaf water against precipitation (εlw-p), which combines the effects of soil evaporation and leaf transpiration, and the biosynthetic hydrogen isotope fractionation (εwax-lw), which describes isotopic enrichment between leaf wax and leaf water. The relationship yields a steady apparent isotopic enrichment factor (εwax-p) between leaf wax and precipitation, which is independent from climatic parameters and has an average value of -107 ± 26‰ for grasses (monocotyledons) and -77 ± 22‰ for trees (dicotyledons). Since the terrestrial n-alkanes, especially n-C27 and n-C29, in sediments are derived from trees and grasses, the likely change of the vegetation type in the uplift of mountains can change the isotopic estimates by about ±30‰, which corresponds to an altitudinal change of ∼1600 m. We, therefore, suggest that hydrogen isotope ratio of sedimentary n-C31 alkane, which is mainly derived from grasses might be better proxies to reconstruct paleoaltitudes. Our large

  2. Migration of strontium in the food chain of plants, animals and man - problems and risks

    International Nuclear Information System (INIS)

    Anke, M.; Seifert, M.; Jaritz, M.; Schaefer, U.; Mueller, R.; Hoppe, Ch.

    2008-01-01

    The aims of investigation were to follow the Sr transport in the food chain from the flora to the fauna and humans, and its dependence on the geological origin og the plant site, industrial emissions, the age and site of plants, the part of plant used for nutrition and the strontium content in the drinking water, to determine the Sr intake of humans with the help of the duplicate method, and to estimate the apparent absorption rate and balance of strontium depending on of the form of diet (mixed or ovolactovegetarian), sex, season, age, region (geological origin of the living space) and method of intake measurement (duplicate or basket method). Strontium, an ultra trace element widespread in the earth's crust, is not essential and only mildly toxic for plants, animals and man according to current knowledge. The biological essentiality of Sr has not been investigated yet. Amoeba species living in sea water use Sr for the formation of their skeleton instead of Ca. There have been no Sr deficiency experiments in animals. Sr is assumed to have cariostatic effect. The toxicity of Sr to humans is not high but is discussed controversially. Therefore, the interest in this ultra trace element used to be exclusively concentrated on the ''9 0 Sr isotope released after nuclear tests. The Sr content in the flora is determined by the geological origin of the habitat and anthropogenic Sr emissions. Syenite and granite weathering soils, moor and loess sites produce a Sr-rich vegetation, whereas plants growing on alluvial riverside and Muschelkalk weathering soils are poor in Sr. The age of plants only has an insignificant effect on their Sr content. Leafy dicotyledons store much, while monocotyledons store less Sr. Root and stem thickenings (carrots, kohlrabi) accumulate medium Sr amounts, whereas fruit and seeds (tuber) are Sr-poor. The winter grazing of game is Sr-rich. The fauna reflects the Sr offer very well through the Sr content in the body or particular tissues. The

  3. Ocorrência de plantas daninhas após cultivo de milho na savana amazônica Occurrence of weeds after corn cultivation in the Amazonian savannah

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    J.A.A. Albuquerque

    2012-12-01

    emergent vegetation in the study area had 419species, nine of which were identified as Dicotyledons, while six were identified as Monocotyledons. Species in the Ciperaceae family were the most abundant, while the families Poaceae, Ciperaceae, Asteraceae, Malvaceae, and Fabaceae exhibited the highest number of individuals and species frequency per plot. Only the Cordia curassavica shrubby growth habit was identified. Cyperus rotundus species showed the highest values in all the phytosociological parameters evaluated, with an importance index value 1.5 times higher than that of Brachiaria humidicola which had the second highest value (40.49.

  4. Tolerância à interferência de plantas competidoras e habilidade de supressão por genótipos de soja: II. Resposta de variáveis de produtividade Tolerance to interference of competing plants and suppressive ability by soybean genotypes: II. Response of yield variables

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    F.P. Lamego

    2004-12-01

    Full Text Available As perdas de produtividade das culturas em decorrência da competição de plantas concorrentes geralmente aumentam quanto mais semelhantes forem suas características morfofisiológicas. O objetivo deste trabalho foi avaliar os efeitos da competição de cultivares de soja, simulando espécies daninhas dicotiledôneas, sobre cultivares de soja portadores de características diferenciais de planta. Para isso, conduziu-se um experimento em campo, em Eldorado do Sul-RS. Os fatores e tratamentos comparados foram: três condições de competição (ausência de plantas de soja concorrentes e presença de plantas concorrentes do cultivar de soja BRS 205 ou Cobb; e quatro cultivares reagentes de soja à competição (IAS 5, BR-16, CD 205 e Fepagro RS-10. Avaliaram-se variáveis relacionadas à produtividade dos cultivares e outras correlatas. Características dissimilares em plantas de cultivares de soja, como estatura e ciclo, resultaram em habilidade competitiva diferenciada com plantas concorrentes. O cultivar de soja CD 205, de estatura elevada e ciclo tardio, mostrou alta habilidade competitiva; IAS 5, de baixa estatura e ciclo precoce, apresentou baixa tolerância à competição, enquanto BR-16 e Fepagro RS-10 são intermediários. Cultivares com elevada habilidade competitiva, além de tolerarem a competição, preservando o potencial de produtividade, também suprimem a produção de grãos das plantas concorrentes.Due to concurrent plant competition, crop yield losses generally increase as their morphophysiological characteristics become more similar. The objective of this research was to evaluate the competitive effects of soybean cultivars mimicking dicotyledonous weed species on soybean cultivars holding dissimilar plant characteristics. Thus, a field experiment was carried out in Eldorado do Sul-RS. The factors and treatments compared were: three competition conditions (absence of competing plants and presence of the soybean cultivar

  5. Allometry of a neotropical palm, Euterpe edulis Mart. Alometria de uma palmeira Neotropical, Euterpe edulis Mart

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    Luciana F. Alves

    2004-06-01

    Full Text Available The stem allometry (stem diameter vs. tree height of a Neotropical palm (Euterpe edulis found in rain and seasonal forest of Southeastern Brazil was examined. Observed height-diameter relationships along the stem (diameter at ground level, (dgl, and diameter at breast height (dbh were compared to three theoretical stability mechanical models: elastic similarity, stress similarity and geometric similarity. Slopes of log-transformed height-diameter relationships did not lie near those predicted by any stability mechanical models. Significant differences in stem allometry were found when comparing dgl to dbh, suggesting greater increase in dbh with height. The relationship between stability safety factor (SSF and palm height showed that both dgl and dbh were found to be above McMahon's theoretical buckling limit for dicotyledonous trees, but some individuals approached this limit in relation to dbh. Despite displaying a similar decreasing pattern of SSF with height, differences found in SSF along the stem - greater SSF for dgl when compared to dbh - indicate that the risk of mechanism failure in palms depends upon the size and varies along the stem. Distinct allometric relationships along the stem obtained for Euterpe edulis may be reflecting possible differences in stem design and growth strategies.Neste trabalho foram analisadas as relações entre o diâmetro e a altura de uma palmeira Neotropical (Euterpe edulis comum na Floresta Atlântica do SE do Brasil. As relações observadas entre a altura e o diâmetro ao longo do estipe (diâmetro ao nível do solo (DAS, e diâmetro ao nível do peito (DAP foram comparadas a três modelos teóricos de estabilidade mecânica: similaridade elástica, similaridade de estresse e similaridade geométrica. As inclinações das regressões altura-diâmetro não se ajustaram a nenhum dos modelos de estabilidade mecânica. Diferenças significativas na alometria do estipe foram encontradas comparando-se as rela

  6. Misturas de herbicidas no manejo de plantas daninhas na cultura do feijão Herbicide mixtures in weed management in bean culture

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    A.F.L. Machado

    2006-01-01

    very low. None of the herbicide combinations was efficient in controlling C. rotundus. Except for fluazifop-p-butyl + bentazon (125 + 480 g ha-1, all the combinations were efficient in controlling the dicotyledonous weed species. The herbicide treatments had no effect on bean productivity. Fomesafen, applied under no-tillage, caused toxicity to the bean culture after the dose of 100 g ha-1, especially to silage corn. Under the conventional tillage, milder symptoms were only observed at the dose of 200 g ha-1. Fomesafen residue was found in the soil only in the no-tillage area without straw on the soil surface, in the area previously cultivated with maize for silage. Fomesafen doses can be reduced when mixed with bentazon without affecting bean productivity. In areas where bean was cultivated after maize harvest for silage, it is important to use small doses of fomesafen to prevent subsequent toxicity of sensitive cultures.

  7. Ontogenia dos estratos parietais da antera de Tabebuia pulcherrima Sandw. (Bignoniaceae Ontogeny of the anther parietal layers of Tabebuia pulcherrima Sandw. (Bignoniaceae

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    Nelson S Bittencourt Jr

    1997-07-01

    Full Text Available A ontogenia do tapete e dos demais estratos parietais, bem como o desenvolvimento do estômio e deiscência da antera de Tabebuia pulcherrima, foram presentemente estudados. O padrão de formação da parede do androsporângio é do tipo Dicotiledôneo. A camada parietal primária, a camada esporogênica e o tapete interno derivam-se diretamente do meristema fundamental. O tecido esporogênico, em cada androsporângio, visto em secção transversal, organiza-se numa fileira celular em forma de ferradura. O tapete é do tipo secretor e possui origem dual. O tapete interno diferencia-se precocemente em relação ao tapete externo. As duas camadas tapetais são discretamente dimórficas, mas tal dimorfismo é perdido no fim do estádio meiótico do esporângio. O dimorfismo tapetai e a precoce diferenciação do tapete interno são interpretados como expressão de um lapso ontogenético entre as duas camadas. Nas regiões dorso-laterais das tecas desenvolve-se um endotécio multiestratificado com espessamentos anelados ou helicoidais nas paredes celulares. A deiscência é precedida pela degeneração dos tecidos placentóides e ruptura dos septos interesporangiais. Apenas as células epidérmicas dos dois lados do sítio de ruptura do estômio (células estomiais estão envolvidas com a ruptura do mesmo.The ontogeny of the tapetum and parietal layers, as well as the stomium development and the dehiscence of the anther of Tabebuia pulcherima was studied. The anther wall formation follows the Dicotyledoneous type. The primary parietal layer, the sporogenous tissue, and the inner tapetum are differentiated directly from the ground meristem. The sporogenous tissue, as seeing in a transverse section, is organized in one cellular strip with a horseshoe outline. The tapetum is secretory and shows a distinct dual origin. The inner tapetai layer differentiates earlier than the outher. The two tapetai layers are moderately dimorphic. However, even such a

  8. Manejo de plantas daninhas na cultura do algodoeiro com S-metolachlor e trifloxysulfuron-sodium em sistema de plantio convencional Weed Management with S-metolachlor and trifloxysulfuron-sodium in cotton field

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    R.S. Freitas

    2006-06-01

    present in the area: Alternanthera tenella, representing over 80% of the total, Bidens sp., Acanthospermum hispidum, Cenchrus echinatus, Digitaria horizontalis, Eleusine indica e Commelina benghalensis Smetolachlor controlled A. tenella, C. echinatus, D. horizontalis, E. indica and C. benghalensis with high efficiency. Trifloxysulfuron-sodium controlled the dicotyledonous species effectively. The treatments providing the highest productivity were S-metolachlor at 768 g ha-1 plus 7.875 g ha-1 trifloxysulfuron-sodium; S-metolachlor at 1,152 g ha-1 plus trifloxysulfuron-sodium at the doses 5.250 and 7.875 g ha-1. The best weed control was obtained with 1,152 g ha-1 S-metolachlor plus 7.875 g ha-1 trifloxysulfuron-sodium.

  9. Palynostratigraphical correlation of the excavated Miocene lignite seams of the Yataǧan basin (Muǧla Province, south-western Turkey)

    Science.gov (United States)

    Bouchal, Johannes Martin; Grímsson, Friðgeir; Denk, Thomas

    2016-04-01

    The excavated main lignite seams and overlying lacustrine sediments of the opencast mines Eskihisar, Salihpaşalar, and Tı naz, Muǧla Province, south-western Turkey were investigated using a high taxonomic resolution palynological approach. The Eskihisar section comprises 47m and 56 samples of which 30 were usable for palynological analysis. The Tı naz section comprises 75 m and 29 samples of which 15 were usable for palynological analysis. Finally, the Salihpaşalar section comprises 25 m and 26 samples of which 16 were usable for palynological analysis. The age of the palynological sections is middle to late Miocene based on radiometric dating and vertebrate fossils. In order to investigate dispersed pollen and spores and their botanical affinities a combined light microscopy and scanning electron microscopy approach was used. The rich palynoflora comprises: seven types of algal cysts (Botryococcus, Zygnemataceae), seventeen spore types belonging to Lycopsida (club mosses), Marsileaceae (water-clover), Osmundaceae, Pteridaceae (brake), and Polypodiaceae; 14 types of gymnosperm pollen belonging to Ephedraceae (Mormon tea), Cupressaceae, Pinaceae (Cathaya, cedar, hemlock, pine, spruce); five types of monocotyledone pollen belonging to Poaceae (grasses, common reed), and Typhaceae (bulrush, bur-reed); ca 90 dicotyledone pollen types belonging to Altingiaceae (sweet gum), Amaranthaceae (goosefoot), Anacardiaceae (sumac family), Apiaceae (parsley family), Aquifoliaceae (holly), Asteraceae (sunflower family), Betulaceae (alder, birch, hazel, hophornbeam, hornbeam), Campanulaceae (bellflower family), Cannabaceae (hackberries), Caprifoliaceae (honeysuckle, teasel family), Caryophyllaceae (pink family), Ericaceae (heather family), Eucommiaceae, Euphorbiaceae (spurge family), Fabaceae (bean family), Fagaceae (beech, oak), Geraniaceae (storkbills), Juglandaceae (hickory, walnut, wingnut), Lamiaceae (bagflower), Linaceae (flax), Lythraceae (waterwillow), Malvaceae

  10. Métodos para la detección de Agrobacterium a partir de muestras de material vegetal, suelo y agua Methods for the detection of Agrobacterium from plant, soil and water samples

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    Adriana M Alippi

    2011-12-01

    Full Text Available El género Agrobacterium incluye especies ftopatógenas que inducen la formación de agallas en el cuello o la proliferación de raíces en cabellera en más de 600 especies de dicotiledóneas, y especies no patógenas cuyo hábitat natural es el suelo. Como no es posible erradicar a las especies patógenas y habida cuenta de que más del 80 % de las infecciones puede provenir de viveros, es importante evitar la diseminación de la enfermedad. Por ello, el objetivo de este trabajo ha sido desarrollar técnicas sensibles y precisas que, aisladamente o combinadas, permitan detectar la presencia de especies y biovares de Agrobacterium a partir de muestras de material vegetal, suelo y agua. Se comprobó que con la estrategia combinada de realizar aislamientos en los medios semiselectivos D1, D1-M y YEM-RCT; PCR multiplex sobre el gen 23S ADNr; PCR específca sobre los genes virC1 y virC2 y bioensayos en plántulas de pimiento cv. California Wonder y en hojas cortadas de kalanchoe, se reduce la posibilidad de obtener falsos negativos y/o falsos positivos. Por lo expuesto, esta combinación de técnicas constituye una herramienta adecuada para el diagnóstico de cepas patógenas de Agrobacterium a partir de distintos tipos de muestras.The genus Agrobacterium includes phytopathogenic bacteria that induce the development of root crown galls and/or aerial galls at the base of the stem or hairy roots on more than 600 species of plants belonging to 90 dicotyledonous families and non-pathogenic species. These bacteria being natural soil inhabitants are particularly diffcult to eradicate, which is a problem in nurseries where more than 80% of infections occur. Since early detection is crucial to avoid the inadvertent spread of the disease, the aim of this work was to develop sensitive and precise identifcation techniques by using a set of semi-selective and differential culture media in combination with a specifc PCR to amplify a partial sequence derived

  11. Controle de dez espécies daninhas em cana-de-açúcar com o herbicida mesotrione em mistura com ametryn e metribuzin Control of ten weed species in sugarcane using mesotrione mixed with ametryn and metribuzin

    Directory of Open Access Journals (Sweden)

    F.T. Carvalho

    2010-01-01

    -emergence control is the great challenge. The objective of this work was to evaluate the efficiency of the herbicide mesotrione in mixture with ametryn and metribuzin in the post-emergence control of ten weeds sown in sugarcane, variety RB86-7515. The weeds used in the experiment were: Brachiaria decumbens, Brachiaria plantaginea, Cenchrus echinatus, Digitaria horizontalis, Panicum maximum, Amaranthus deflexus, Bidens pilosa, Euphorbia heterophylla, Ipomoea nil and Sida glaziovii, sown in between the rows after crop emergence. The herbicides were applied on the 45th day after sugarcane planting when the monocotyledon weeds reached the third tiller phase and the dicotyledon weeds completed three to four leaves. The following treatments were carried out: mesotrione (120 g ha-1; ametryn (2,000 g ha-1; metribuzin (1,920 g ha-1; mesotrione + ametryn (120 g + 2,000 g ha-1; mesotrione + metribuzin (120 g + 1,920 g ha-1 and control with and without weeds. It was concluded that the herbicides, isolated or in mixture, were selective to sugarcane. Regarding control efficiency, it was observed that the herbicide mesotrione was efficient in the control of A. deflexus; ametryn was efficient in the control of A. deflexus, B. pilosa and I. nil; metribuzin was efficient in the control of A. deflexus, B. pilosa and S. glaziovii; mesotrione + ametryn were efficient in the control of B. decumbens, B. plantaginea, D. horizontalis, P. maximum, A. deflexus, B. pilosa, I. nil and S. glaziovii, and mesotrione + metribuzin was efficient in the control of B. plantaginea, D. horizontalis, P. maximum, A. deflexus, B. pilosa and S. glaziovii. A high synergistic effect of mesotrione was verified with the tested herbicides, with the mixture with ametryn being the most prominent.

  12. Competição de misturas de herbicidas nas principais regiões algodoeiras (Gossypium hirsutum L. no E. de Minas Gerais

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    J.P. del C. Laca-Buendia

    1978-09-01

    região foi encontrado efeito negativo da aplicação dos herbicidas.Several herbicide mixtures were tested on cotton, (Gossypium hirsutum L. in the main production areas of the State of Minas Gerais, Brasil. The cultivar "Minas Dona Beta", was used in the Metalúrgica region, whilst in Triângulo and Norte the cultivar employed was ."IAC-13-1", . In Triângulo litle regrowth occurred up to 30 days after application when the following mixtures were used: dinitramine + diuron, dinitroanilin + prometryne and pendimethalin + diuron. These treatments controlled 96.2%, 92.5% and 96.5% of the total weeds, respectively. When yields were compared, 1,962 Kg/ha were obtained in the best treatment (pendimethalin + diuron, against the control plots average of 1,130 Kg/ha. Tank mixtures of 2,00 Kg/ha of alachlor and 0.35 Kg/ha of metribuzin, or 3,00 Kg/ha of alachlor and 0,50 Kg/ha of metribuzin, and 1,00 Kg/ha of trifluralin and 0,50 Kg/ha of metribuzin were the most efficient in controlling grasses and dicotyledons. Effective weed control was recorded in Nor th of Minas Gerais when pendimethalin + diuron were applied expressed as: 86.4%, 83.6% and 70.3% of the total weeds after 30,50 and 80 days, respectively. The mixtures dinitramine + fluome - turon and dinitroanilin + fluometuron showed the best results regard to a cotton yield of 1,532 Kg/ha, produced in the treated plots against only 229 kg/ha in the control (unhoed. The best combination for total weed control in the Metalúrgica region was dinitramine + diuron with an efficiency of 67% after 30 days. When differences in fiber production were considered, however, the best mixture was dinitramine + fluometuron, the treated plots yielding 831 kg/ha and the control 145 kg/ha.

  13. Variações nos métodos de aplicação dos herbicidas Diuron e Tripluralin na cultura do algodoeiro Methods of application of the herbicides Diuron and Trifluralin in cotton

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    Aldo Alves

    1967-01-01

    application of the herbicides. The method of incorporation in pre-planting was not found to be more advantageous than the pre-emergence treatment. 3 - A reduction in the dosage of diuron (0.80 kg/ha in pre-pianting, with subsequent incorporation into the soil, did not give adequate control of annual weeds. 4 - The application of trifluralin (1 kg/ha, incorporated in pre-planting, gave excellent control of grass weeds, but the dicotyledonous species were little affected. 5 - A combination of diuron (0.80 kg/ha and trifluralin (0.5 kg/ha appears to be practical. The application of trifluralin in pre-planting, incorporated into the soil, and of diuron in pre-emergence, increased considerably the area of control of both groups of weeds. This practice, using two herbicides, offers the following advantages; a greater variety of weeds controlled; b a lessening of the opportunity for chlorosis to appear in the cotton by the use of a smaller dosage of diuron; c a reduced residual effect for the subsequent crops; d the band application of two products and reduction in cost of applied material; e the possibility of cultivating between rows without loss of efficiency of the incorporated product. 6 - The treatment with diuron (1.60 kg/ha applied in pre-emergence was sufficiently effective in the control of broad leaf weeds, while control of grass species was less so. Slight symptoms of phytotoxicity were noted, but these were not sufficient to affect the yield and with further development of the crop they disappeared. The yield from herbicide-treated plots was greater than that from check plots which received manual hoeing.

  14. Preliminary data on nutritional value of abundant species in supraforestal Pyrenean pastures

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    Marinas, A.

    2006-12-01

    Full Text Available

    The alpine pastures of the Pyrenees have been used as summer ranges for centuries and continue to be an important forage resource for livestock husbandry to this day. Some studies attribute high nutritional values to alpine pastures, but recent surveys have revealed weight-loss in animals summering in Pyrenean pastures. There is virtually no information available with regard to the nutritional value of the species which constitute Pyrenean summer pastures. Twenty-three of the most common species were analysed chemically to determine their nutritional value and their capacity to meet livestock requirements. Monthly samplings of uneaten plants were performed from June to September in plots where species were abundant. These samples were analysed to determine neutral detergent fiber (NDF, lignin (ADL, crude protein (CP, P, K and Mg content. In vitro dry matter digestibility (IVDMD was calculated using the pepsin-cellulase method and metabolizable energy (ME was estimated from it. On average, graminoids presented higher levels of NDF and lower levels of the other nutrients when compared with forbs. Month effect was significant for ADL, CP, P and K. In these cases June was the month which differed significantly from other months. Crude protein, P and K contents diminished with maturity, whereas ADL and Ca levels increased. NDF, IVDMD and Mg values remained fairly constant throughout the summer in both botanical groups. This fact is noteworthy because it may provide a constant supply of ME for herbivores during the grazing period (July to September. Dicotyledoneous forbs meet livestock requirements of all the nutrients analysed except P during the grazing period. Graminoids are deficient in ME (mainly for sheep, P and Mg, and their CP content is slightly low for the requirements of sheep. When cattle and sheep diets

  15. Controlled Release Formulations of Auxinic Herbicides

    Science.gov (United States)

    Kowalski, Witold J.; Siłowiecki, Andrzej.; Romanowska, Iwona; Glazek, Mariola; Bajor, Justyna; Cieciwa, Katarzyna; Rychter, Piotr

    2013-04-01

    Controlled release formulations are applied extensively for the release of active ingredients such as plant protection agents and fertilizers in response to growing concern for ecological problems associated with increased use of plant protection chemicals required for intensive agricultural practices [1]. We synthesized oligomeric mixtures of (R,S)-3-hydroxy butyric acid chemically bonded with 2,4-D, Dicamba and MCPA herbicides (HBA) respectively, and determined their molecular structure and molecular weight dispersion by the size exclusion chromatography, proton magnetic resonance spectrometry and electro-spray ionization mass spectrometry. Further we carried out bioassays of herbicidal effectiveness of the HBA herbicides vs. series of dicotyledonous weeds and crop injury tests [2, 3, 4]. Field bioassays were accomplished according to the EPPO standards [5]. Groups of representative weeds (the development stages in the BCCH scale: 10 - 30) were selected as targets. Statistical variabilities were assessed by the Fisher LSD test for plants treated with the studied herbicides in form of HBA oligomers, the reference herbicides in form of dimethyl ammonium salts (DMA), and untreated plants. No statistically significant differences in the crop injuries caused by the HBA vs. the DMA reference formulation were observed. The effectiveness of the HBA herbicides was lower through the initial period (ca. 2 weeks) relative to the DMA salts, but a significant increase in the effectiveness of the HBA systems followed during the remaining fraction of each assay. After 6 weeks all observed efficiencies approached 100%. The death of weeds treated with the HBA herbicides was delayed when compared with the DMA reference herbicides. The delayed uptake observed for the HBA oligomers relative to the DMA salts was due to controlled release phenomena. In case of the DMA salts the total amount of active ingredients was available at the target site. By contrast, the amount of an active

  16. Manejo de plantas daninhas na cultura do algodoeiro em sistema de plantio direto Weed management of cotton under no-tillage

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    R.S. Freitas

    2006-06-01

    , under no-tillage systems. A factorial scheme (4 x 4 + 1 was used in a completely randomized block design, with four replications. The first factor consisted of four S-metolachlor doses (0, 384, 768 and 1.152 g ha-1 and the second of four trifloxysulfuron-sodium doses (0.0; 2.625; 5.250; and 7.875 g ha-1, plus a control kept weeded throughout the cotton cycle. The weeds were evaluated 25, 45 and 60 DAE. The following weed species were present in the area: Alternanthera tenella, representing over 80% of the total, Bidens spp., Tridax procumbens, Acanthospermum hispidum, Ipomoea grandifolia, Digitaria horizontalis, Eleusine indica, and Commelina benghalensis. S-metolachlor controlled these species with low efficiency. The best control was obtained with the combination of S-metolachlor at 1.152 g ha-1 with trifloxysulfuron-sodium at 7.875 g ha-1, which controlled more than 90% of A. tenella and other dicotyledonous weeds until 60 DAE. This control was still not sufficient to clear the ground for the cotton harvest. The combinations S-metolachlor at 384 and 768 g ha¹ with trifloxysufuron-sodium at 7.875 g ha-1 and S-metolachlor at 1.152 g ha-1 with trifloxysulfuron-sodium in the doses 5.250 and 7.875 g ha-1 provided similar yields for the weeded control.

  17. Ocorrência de plantas daninhas no cultivo de beterraba com cobertura morta e adubação orgânica Weed occurrence in sugar beet crop under mulching and organic fertilization

    Directory of Open Access Journals (Sweden)

    M.A.N Sediyama

    2010-12-01

    in sugar beet and few herbicides are suitable for this crop. This work aimed to evaluate the effect of mulching using coffee husk and sugarcane bagasse, and doses of swine culture waste water sedimentation pond sludge on weed incidence and yield of sugar beet cultivar Early Wonder. The experiment, carried out at the EPAMIG Experimental Farm in Oratórios-MG, was arranged as a split-plot in a randomized block design with four replications. The plots consisted of three types of cover crops: sugarcane bagasse, coffee husk and no cover, and the split-plots of five doses of sludge from swine wastewater sedimentation pond (0, 10, 20, 40 and 60t ha-1. At 45 days after seedling transplanting (DAT, the weed population was evaluated and at 70 DAT, harvest was carried out. Coffee husk and sugarcane bagasse were effective in reducing the total fresh weight of weeds, mainly because of the suppressive effect of mulching on dicotyledonous weeds. Nut grass (Cyperus rotundus dry mass increased with coffee husk, while dry mass of other monocots showed no difference among the three treatments. Increasing doses of sludge caused a linear reduction in the dry mass of monocots, except of nut grass. Coffee husk mulching provided the highest root unit weight and increased commercial root yield, regardless of the sludge doses.

  18. Mapping the Distribution and Flora of the Weeds in Canola Fields of Gorgan Township by Geographic Information System (GIS

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    sahar jannati ataie

    2018-02-01

    species in canola fields of Gorgan Township and these belonged to 18 families. About 17.1 percent of these species belong to Poaceae and 11.4 percent belongs to Asteraceae and other families, respectively. In general, 77.2 and 22.8 percent of species were annual and perennial weeds, respectively. Also, 80 percent of weeds belong to dicotyledonous and 20 percent to monocotyledonous. The most important species of Poaceae family were Phalaris minor, Avena ludoviciana, Alopecuros sp., Poa annua, Lolium temulentum and Bromus sp. Also, the most important species of Asteraceae were Artemisia annua, Cirsium arvense, Sonchus sp. and Senecio vulgaris. 85.7 percent of weeds reported as broad-leaved weeds and 14.3 percent belong to the narrow leaves. Phalaris minor was the most important weed of narrow leaves and Melilotus officinalis was the most important broad leaf out groups. Among the weeds have been identified, 88.5 percent had photosynthetic cycle of C3 and 11.5 percent were C4. The study results also showed that Phalaris minor had the highest relative dominance among the 35 species and then Melilotus officinalis, Rapistrum rugosum and Avena ludoviciana had 29.4, 28.9 and 23.5 of relative dominance, respectively. To view maps of distribution, based on the abundance of weeds, the three categories 50-100 percent, 30-50 percent and lower than 30 percent were classified. Weeds that have had 50-100 percent frequency were considered as the most important weeds in canola fields of Gorgan. These weeds includes: Phalaris minor and Melilotus officinalis. Weeds that have a frequency between 30-50 percent were considered as medium importance weeds that included Sinapis arvensis, Veronica persica, Avena ludoviciana and Rapistrum rugosum. In final, the weeds with a frequency of less than 30 percent, were placed in the third group as small percentage of surveyed fields. The most important weeds in this group recorded as Artemisia annua, Ranunculus sp., Polygonum convolvulus and Alopecuros sp

  19. Redução da interferência de Brachiaria decumbens na formação de pastagem com Penisetum purpureum através de herbicidas Reduction of Brachiaria decumbens interference on Pennisetum purpureum pasture establishment through herbicides

    Directory of Open Access Journals (Sweden)

    W. Silva

    2002-08-01

    kg ha-1, were: ametryne (1.25; 2.50 and 3.75 and oxyfluorfen (0.48; 0.96 and 1.44, in four repetitions. The treatments were distributed in randomized blocks in both experiments, with added as treatments (weeded and weed-free, using the elephant-grass cultivars Cameroon and Pioneer. Herbicides in post-emergence were applied on the cultivar plant tops, at 20 days after planting, and in the pre-emergence experiment, one day after planting, and the soil was wet at the moment of herbicide application. Metolachlor, atrazine + metolachlor and oxyfluorfen applied in pre-emergence were selective for Pioneer and Cameroon cultivars. Ametryne and oxyfluorfen were also selective for cultivars when sprayed in post-emergence conditions. Because of initial damages to the crop, oxyfluorfen application in the dose of 1.44 kg ha-1, as well as, in pre- and post-emergence of the crop, combined with ametryne application in the dose of 3.75 kg ha-1 in post-emergence, must be avoided. B. decumbens and B. brizantha were controlled in 90.9% in pre-emergence, when intermediate and higher doses of the herbicides were used. Dicotyledonous plant control was 85% with metolachlor, atrazine + metalachlor and oxyfluorfen, except when the lowest doses were applied. In pre-emergence application, ametryne doses of 2.50 and 3.75 kg ha-1 and oxyfluorfen in the three doses studied provided a control level over 90% in B. decumbens, B. brizantha, S. glaziovii and S. urens, while D. tortuosum, and A. australe control was over 77.9%. In either pre- or in post-emergence application, residual effect of weed control was up to 90 days after application. Treatments with pre-emergence herbicides were 36.2% higher in cultivar height evaluated in pre-emergence and 34.7% higher in height in post-emergence, than the treatment weeded. As for above ground shoot dry matter accumulation, cultivars presented mean earnings of 48.8% in the treatments with pre-emergence herbicides and of 61.9% in post-emergence herbicides

  20. Association Mapping of Cell Wall Synthesis Regulatory Genes and Cell Wall Quality in Switchgrass

    Energy Technology Data Exchange (ETDEWEB)

    Bartley, Laura [Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology; Wu, Y. [Oklahoma State Univ., Stillwater, OK (United States); Zhu, L. [Oklahoma State Univ., Stillwater, OK (United States); Brummer, E. C. [Noble Foundation, Ardmore, OK (United States); Saha, M. [Noble Foundation, Ardmore, OK (United States)

    2016-05-31

    Inefficient conversion of biomass to biofuels is one of the main barriers for biofuel production from such materials. Approximately half of polysaccharides in biomass remain unused by typical biochemical conversion methods. Conversion efficiency is influenced by the composition and structure of cell walls of biomass. Grasses such as wheat, maize, and rice, as well as dedicated perennial bioenergy crops, like switchgrass, make up ~55% of biomass that can be produced in the United States. Grass cell walls have a different composition and patterning compared with dicotyledonous plants, including the well-studied model plant, Arabidopsis. This project identified genetic determinants of cell wall composition in grasses using both naturally occurring genetic variation of switchgrass and gene network reconstruction and functional assays in rice. In addition, the project linked functional data in rice and other species to switchgrass improvement efforts through curation of the most abundant class of regulators in the switchgrass genome. Characterizing natural diversity of switchgrass for variation in cell wall composition and properties, also known as quality, provides an unbiased avenue for identifying biologically viable diversity in switchgrass cell walls. To characterizing natural diversity, this project generated cell wall composition and enzymatic deconstruction data for ~450 genotypes of the Switchgrass Southern Association Collection (SSAC), a diverse collection composed of 36 switchgrass accessions from the southern U.S. distribution of switchgrass. Comparing these data with other measures of cell wall quality for the same samples demonstrated the complementary nature of the diverse characterization platforms now being used for biomass characterization. Association of the composition data with ~3.2K single nucleotide variant markers identified six significant single nucleotide variant markers co-associated with digestibility and another compositional trait. These