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Sample records for dense taxon sampling

  1. Increased taxon sampling greatly reduces phylogenetic error.

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    Zwickl, Derrick J; Hillis, David M

    2002-08-01

    Several authors have argued recently that extensive taxon sampling has a positive and important effect on the accuracy of phylogenetic estimates. However, other authors have argued that there is little benefit of extensive taxon sampling, and so phylogenetic problems can or should be reduced to a few exemplar taxa as a means of reducing the computational complexity of the phylogenetic analysis. In this paper we examined five aspects of study design that may have led to these different perspectives. First, we considered the measurement of phylogenetic error across a wide range of taxon sample sizes, and conclude that the expected error based on randomly selecting trees (which varies by taxon sample size) must be considered in evaluating error in studies of the effects of taxon sampling. Second, we addressed the scope of the phylogenetic problems defined by different samples of taxa, and argue that phylogenetic scope needs to be considered in evaluating the importance of taxon-sampling strategies. Third, we examined the claim that fast and simple tree searches are as effective as more thorough searches at finding near-optimal trees that minimize error. We show that a more complete search of tree space reduces phylogenetic error, especially as the taxon sample size increases. Fourth, we examined the effects of simple versus complex simulation models on taxonomic sampling studies. Although benefits of taxon sampling are apparent for all models, data generated under more complex models of evolution produce higher overall levels of error and show greater positive effects of increased taxon sampling. Fifth, we asked if different phylogenetic optimality criteria show different effects of taxon sampling. Although we found strong differences in effectiveness of different optimality criteria as a function of taxon sample size, increased taxon sampling improved the results from all the common optimality criteria. Nonetheless, the method that showed the lowest overall

  2. Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships

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    Pick, K.S.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D.J.; Wrede, P.; Wiens, M.; Alié, A.; Morgenstern, B.; Manuel, M.; Wörheide, G.

    2010-01-01

    Despite expanding data sets and advances in phylogenomic methods, deep-level metazoan relationships remain highly controversial. Recent phylogenomic analyses depart from classical concepts in recovering ctenophores as the earliest branching metazoan taxon and propose a sister-group relationship between sponges and cnidarians (e.g., Dunn CW, Hejnol A, Matus DQ, et al. (18 co-authors). 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452:745–749). Here, we argue that these results are artifacts stemming from insufficient taxon sampling and long-branch attraction (LBA). By increasing taxon sampling from previously unsampled nonbilaterians and using an identical gene set to that reported by Dunn et al., we recover monophyletic Porifera as the sister group to all other Metazoa. This suggests that the basal position of the fast-evolving Ctenophora proposed by Dunn et al. was due to LBA and that broad taxon sampling is of fundamental importance to metazoan phylogenomic analyses. Additionally, saturation in the Dunn et al. character set is comparatively high, possibly contributing to the poor support for some nonbilaterian nodes. PMID:20378579

  3. Assessing the value of DNA barcodes for molecular phylogenetics: effect of increased taxon sampling in lepidoptera.

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    John James Wilson

    Full Text Available BACKGROUND: A common perception is that DNA barcode datamatrices have limited phylogenetic signal due to the small number of characters available per taxon. However, another school of thought suggests that the massively increased taxon sampling afforded through the use of DNA barcodes may considerably increase the phylogenetic signal present in a datamatrix. Here I test this hypothesis using a large dataset of macrolepidopteran DNA barcodes. METHODOLOGY/PRINCIPAL FINDINGS: Taxon sampling was systematically increased in datamatrices containing macrolepidopteran DNA barcodes. Sixteen family groups were designated as concordance groups and two quantitative measures; the taxon consistency index and the taxon retention index, were used to assess any changes in phylogenetic signal as a result of the increase in taxon sampling. DNA barcodes alone, even with maximal taxon sampling (500 species per family, were not sufficient to reconstruct monophyly of families and increased taxon sampling generally increased the number of clades formed per family. However, the scores indicated a similar level of taxon retention (species from a family clustering together in the cladograms as the number of species included in the datamatrix was increased, suggesting substantial phylogenetic signal below the 'family' branch. CONCLUSIONS/SIGNIFICANCE: The development of supermatrix, supertree or constrained tree approaches could enable the exploitation of the massive taxon sampling afforded through DNA barcodes for phylogenetics, connecting the twigs resolved by barcodes to the deep branches resolved through phylogenomics.

  4. Phylogenetic representativeness: a new method for evaluating taxon sampling in evolutionary studies

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    Passamonti Marco

    2010-04-01

    Full Text Available Abstract Background Taxon sampling is a major concern in phylogenetic studies. Incomplete, biased, or improper taxon sampling can lead to misleading results in reconstructing evolutionary relationships. Several theoretical methods are available to optimize taxon choice in phylogenetic analyses. However, most involve some knowledge about the genetic relationships of the group of interest (i.e., the ingroup, or even a well-established phylogeny itself; these data are not always available in general phylogenetic applications. Results We propose a new method to assess taxon sampling developing Clarke and Warwick statistics. This method aims to measure the "phylogenetic representativeness" of a given sample or set of samples and it is based entirely on the pre-existing available taxonomy of the ingroup, which is commonly known to investigators. Moreover, our method also accounts for instability and discordance in taxonomies. A Python-based script suite, called PhyRe, has been developed to implement all analyses we describe in this paper. Conclusions We show that this method is sensitive and allows direct discrimination between representative and unrepresentative samples. It is also informative about the addition of taxa to improve taxonomic coverage of the ingroup. Provided that the investigators' expertise is mandatory in this field, phylogenetic representativeness makes up an objective touchstone in planning phylogenetic studies.

  5. Likelihood inference of non-constant diversification rates with incomplete taxon sampling.

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    Sebastian Höhna

    Full Text Available Large-scale phylogenies provide a valuable source to study background diversification rates and investigate if the rates have changed over time. Unfortunately most large-scale, dated phylogenies are sparsely sampled (fewer than 5% of the described species and taxon sampling is not uniform. Instead, taxa are frequently sampled to obtain at least one representative per subgroup (e.g. family and thus to maximize diversity (diversified sampling. So far, such complications have been ignored, potentially biasing the conclusions that have been reached. In this study I derive the likelihood of a birth-death process with non-constant (time-dependent diversification rates and diversified taxon sampling. Using simulations I test if the true parameters and the sampling method can be recovered when the trees are small or medium sized (fewer than 200 taxa. The results show that the diversification rates can be inferred and the estimates are unbiased for large trees but are biased for small trees (fewer than 50 taxa. Furthermore, model selection by means of Akaike's Information Criterion favors the true model if the true rates differ sufficiently from alternative models (e.g. the birth-death model is recovered if the extinction rate is large and compared to a pure-birth model. Finally, I applied six different diversification rate models--ranging from a constant-rate pure birth process to a decreasing speciation rate birth-death process but excluding any rate shift models--on three large-scale empirical phylogenies (ants, mammals and snakes with respectively 149, 164 and 41 sampled species. All three phylogenies were constructed by diversified taxon sampling, as stated by the authors. However only the snake phylogeny supported diversified taxon sampling. Moreover, a parametric bootstrap test revealed that none of the tested models provided a good fit to the observed data. The model assumptions, such as homogeneous rates across species or no rate shifts, appear

  6. Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae.

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    Ning Wang

    Full Text Available Galliform birds (relatives of the chicken and turkey have attracted substantial attention due to their importance to society and value as model systems. This makes understanding the evolutionary history of Galliformes, especially the species-rich family Phasianidae, particularly interesting and important for comparative studies in this group. Previous studies have differed in their conclusions regarding galliform phylogeny. Some of these studies have suggested that specific clades within this order underwent rapid radiations, potentially leading to the observed difficulty in resolving their phylogenetic relationships. Here we presented analyses of six nuclear intron sequences and two mitochondrial regions, an amount of sequence data larger than many previous studies, and expanded taxon sampling by collecting data from 88 galliform species and four anseriform outgroups. Our results corroborated recent studies describing relationships among the major families, and provided further evidence that the traditional division of the largest family, the Phasianidae into two major groups ("pheasants" and "partridges" is not valid. Within the Phasianidae, relationships among many genera have varied among studies and there has been little consensus for the placement of many taxa. Using this large dataset, with substantial sampling within the Phasianidae, we obtained strong bootstrap support to confirm some previously hypothesized relationships and we were able to exclude others. In addition, we added the first nuclear sequence data for the partridge and quail genera Ammoperdix, Caloperdix, Excalfactoria, and Margaroperdix, placing these taxa in the galliform tree of life with confidence. Despite the novel insights obtained by combining increased sampling of taxa and loci, our results suggest that additional data collection will be necessary to solve the remaining uncertainties.

  7. Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.

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    Reddy, Sushma; Kimball, Rebecca T; Pandey, Akanksha; Hosner, Peter A; Braun, Michael J; Hackett, Shannon J; Han, Kin-Lan; Harshman, John; Huddleston, Christopher J; Kingston, Sarah; Marks, Ben D; Miglia, Kathleen J; Moore, William S; Sheldon, Frederick H; Witt, Christopher C; Yuri, Tamaki; Braun, Edward L

    2017-09-01

    Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life. However, it has become clear that analyses of these large genomic data sets can also result in conflicting estimates of phylogeny. Here, we use the early divergences in Neoaves, the largest clade of extant birds, as a "model system" to understand the basis for incongruence among phylogenomic trees. We were motivated by the observation that trees from two recent avian phylogenomic studies exhibit conflicts. Those studies used different strategies: 1) collecting many characters [$\\sim$ 42 mega base pairs (Mbp) of sequence data] from 48 birds, sometimes including only one taxon for each major clade; and 2) collecting fewer characters ($\\sim$ 0.4 Mbp) from 198 birds, selected to subdivide long branches. However, the studies also used different data types: the taxon-poor data matrix comprised 68% non-coding sequences whereas coding exons dominated the taxon-rich data matrix. This difference raises the question of whether the primary reason for incongruence is the number of sites, the number of taxa, or the data type. To test among these alternative hypotheses we assembled a novel, large-scale data matrix comprising 90% non-coding sequences from 235 bird species. Although increased taxon sampling appeared to have a positive impact on phylogenetic analyses the most important variable was data type. Indeed, by analyzing different subsets of the taxa in our data matrix we found that increased taxon sampling actually resulted in increased congruence with the tree from the previous taxon-poor study (which had a majority of non-coding data) instead of the taxon-rich study (which largely used coding data). We suggest that the observed differences in the estimates of topology for these studies reflect data-type effects due to violations of the models used in phylogenetic analyses, some of which

  8. Tackling an intractable problem: Can greater taxon sampling help resolve relationships within the Stenopelmatoidea (Orthoptera: Ensifera)?

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    Vandergast, Amy; Weissman, David B; Wood, Dustin; Rentz, David C F; Bazelet, Corinna S; Ueshima, Norihiro

    2017-01-01

    The relationships among and within the families that comprise the orthopteran superfamily Stenopelmatoidea (suborder Ensifera) remain poorly understood. We developed a phylogenetic hypothesis based on Bayesian analysis of two nuclear ribosomal and one mitochondrial gene for 118 individuals (84 de novo and 34 from GenBank). These included Gryllacrididae from North, Central, and South America, South Africa and Madagascar, Australia and Papua New Guinea; Stenopelmatidae from North and Central America and South Africa; Anostostomatidae from North and Central America, Papua New Guinea, New Zealand, Australia, and South Africa; members of the Australian endemic Cooloola (three species); and a representative of Lezina from the Middle East. We also included representatives of all other major ensiferan families: Prophalangopsidae, Rhaphidophoridae, Schizodactylidae, Tettigoniidae, Gryllidae, Gryllotalpidae and Myrmecophilidae and representatives of the suborder Caelifera as outgroups. Bayesian analyses of concatenated sequence data supported a clade of Stenopelmatoidea inclusive of all analyzed members of Gryllacrididae, Stenopelmatidae, Anostostomatidae, Lezina and Cooloola. We found Gryllacrididae worldwide to be monophyletic, while we did not recover a monophyletic Stenopelmatidae nor Anostostomatidae. Australian Cooloola clustered in a clade composed of Australian, New Zealand, and some (but not all) North American Anostostomatidae. Lezina was included in a clade of New World Anostostomatidae. Finally, we compiled and compared karyotypes and sound production characteristics for each supported group. Chromosome number, centromere position, drumming, and stridulation differed among some groups, but also show variation within groups. This preliminary trait information may contribute toward future studies of trait evolution. Despite greater taxon sampling within Stenopelmatoidea than previous efforts, some relationships among the families examined continue to remain elusive.

  9. Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling.

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    Alexis Crête-Lafrenière

    Full Text Available Considerable research efforts have focused on elucidating the systematic relationships among salmonid fishes; an understanding of these patterns of relatedness will inform conservation- and fisheries-related issues, as well as provide a framework for investigating evolutionary mechanisms in the group. However, uncertainties persist in current Salmonidae phylogenies due to biological and methodological factors, and a comprehensive phylogeny including most representatives of the family could provide insight into the causes of these difficulties. Here we increase taxon sampling by including nearly all described salmonid species (n = 63 to present a time-calibrated and more complete portrait of Salmonidae using a combination of molecular markers and analytical techniques. This strategy improved resolution by increasing the signal-to-noise ratio and helped discriminate methodological and systematic errors from sources of difficulty associated with biological processes. Our results highlight novel aspects of salmonid evolution. First, we call into question the widely-accepted evolutionary relationships among sub-families and suggest that Thymallinae, rather than Coregoninae, is the sister group to the remainder of Salmonidae. Second, we find that some groups in Salmonidae are older than previously thought and that the mitochondrial rate of molecular divergence varies markedly among genes and clades. We estimate the age of the family to be 59.1 MY (CI: 63.2-58.1 MY old, which likely corresponds to the timing of whole genome duplication in salmonids. The average, albeit highly variable, mitochondrial rate of molecular divergence was estimated as ~0.31%/MY (CI: 0.27-0.36%/MY. Finally, we suggest that some species require taxonomic revision, including two monotypic genera, Stenodus and Salvethymus. In addition, we resolve some relationships that have been notoriously difficult to discern and present a clearer picture of the evolution of the group. Our

  10. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

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    Rice Danny W

    2004-09-01

    Full Text Available Abstract Background Numerous studies, using in aggregate some 28 genes, have achieved a consensus in recognizing three groups of plants, including Amborella, as comprising the basal-most grade of all other angiosperms. A major exception is the recent study by Goremykin et al. (2003; Mol. Biol. Evol. 20:1499–1505, whose analyses of 61 genes from 13 sequenced chloroplast genomes of land plants nearly always found 100% support for monocots as the deepest angiosperms relative to Amborella, Calycanthus, and eudicots. We hypothesized that this conflict reflects a misrooting of angiosperms resulting from inadequate taxon sampling, inappropriate phylogenetic methodology, and rapid evolution in the grass lineage used to represent monocots. Results We used two main approaches to test this hypothesis. First, we sequenced a large number of chloroplast genes from the monocot Acorus and added these plus previously sequenced Acorus genes to the Goremykin et al. (2003 dataset in order to explore the effects of altered monocot sampling under the same analytical conditions used in their study. With Acorus alone representing monocots, strongly supported Amborella-sister trees were obtained in all maximum likelihood and parsimony analyses, and in some distance-based analyses. Trees with both Acorus and grasses gave either a well-supported Amborella-sister topology or else a highly unlikely topology with 100% support for grasses-sister and paraphyly of monocots (i.e., Acorus sister to "dicots" rather than to grasses. Second, we reanalyzed the Goremykin et al. (2003 dataset focusing on methods designed to account for rate heterogeneity. These analyses supported an Amborella-sister hypothesis, with bootstrap support values often conflicting strongly with cognate analyses performed without allowing for rate heterogeneity. In addition, we carried out a limited set of analyses that included the chloroplast genome of Nymphaea, whose position as a basal angiosperm was

  11. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

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    Stefanović, Saša; Rice, Danny W; Palmer, Jeffrey D

    2004-01-01

    Background Numerous studies, using in aggregate some 28 genes, have achieved a consensus in recognizing three groups of plants, including Amborella, as comprising the basal-most grade of all other angiosperms. A major exception is the recent study by Goremykin et al. (2003; Mol. Biol. Evol. 20:1499–1505), whose analyses of 61 genes from 13 sequenced chloroplast genomes of land plants nearly always found 100% support for monocots as the deepest angiosperms relative to Amborella, Calycanthus, and eudicots. We hypothesized that this conflict reflects a misrooting of angiosperms resulting from inadequate taxon sampling, inappropriate phylogenetic methodology, and rapid evolution in the grass lineage used to represent monocots. Results We used two main approaches to test this hypothesis. First, we sequenced a large number of chloroplast genes from the monocot Acorus and added these plus previously sequenced Acorus genes to the Goremykin et al. (2003) dataset in order to explore the effects of altered monocot sampling under the same analytical conditions used in their study. With Acorus alone representing monocots, strongly supported Amborella-sister trees were obtained in all maximum likelihood and parsimony analyses, and in some distance-based analyses. Trees with both Acorus and grasses gave either a well-supported Amborella-sister topology or else a highly unlikely topology with 100% support for grasses-sister and paraphyly of monocots (i.e., Acorus sister to "dicots" rather than to grasses). Second, we reanalyzed the Goremykin et al. (2003) dataset focusing on methods designed to account for rate heterogeneity. These analyses supported an Amborella-sister hypothesis, with bootstrap support values often conflicting strongly with cognate analyses performed without allowing for rate heterogeneity. In addition, we carried out a limited set of analyses that included the chloroplast genome of Nymphaea, whose position as a basal angiosperm was also, and very recently

  12. Effects of taxon sampling on molecular dating for within-genus divergence events, when deep fossils are used for calibration

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    Richard I. MILNE

    2009-01-01

    A universal method of molecular dating that can be applied to all families and genera regardless of their fossil records, or lack thereof, is highly desirable. A possible method for eudicots is to use a large phylogeny calibrated using deep fossils including tricolpate pollen as a fixed (124 mya) calibration point. This method was used to calculate node ages within three species-poor disjunct basal eudicot genera, Caulophyllum, Podophyllum and Pachysandra, and sensitivity of these ages to effects such as taxon sampling were then quantified. By deleting from one to three accessions related to each genus in 112 different combinations, a confidence range describing variation due only to taxon sampling was generated. Ranges for Caulophyllum, Podophyllum and Pachysandra were 8.4-10.6, 7.6-20.0, and 17.6-25.0 mya, respectively. However, the confidence ranges calculated using bootstrapping were much wider, at 3-19, 0-32 and 11-32 mya, respectively. Furthermore, deleting 10 adjacent taxa had a large effect in Pachysandra only, indicating that undersampling effects are significant among Buxales. Changes to sampling density in neighboring clades, or to the position of the fixed fossil calibration point had small to negligible effects. Non-parametric rate smoothing was more sensitive to taxon sampling effects than was penalized likelihood. The wide range for Podophyllum, compared to the other two genera, was probably due to a high degree of rate heterogeneity within this genus. Confidence ranges calculated by this method could be narrowed by sampling more individuals within the genus of interest, and by sequencing multiple DNA regions from all species in the phylogeny.

  13. How to handle speciose clades? Mass taxon-sampling as a strategy towards illuminating the natural history of Campanula (Campanuloideae.

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    Guilhem Mansion

    Full Text Available BACKGROUND: Speciose clades usually harbor species with a broad spectrum of adaptive strategies and complex distribution patterns, and thus constitute ideal systems to disentangle biotic and abiotic causes underlying species diversification. The delimitation of such study systems to test evolutionary hypotheses is difficult because they often rely on artificial genus concepts as starting points. One of the most prominent examples is the bellflower genus Campanula with some 420 species, but up to 600 species when including all lineages to which Campanula is paraphyletic. We generated a large alignment of petD group II intron sequences to include more than 70% of described species as a reference. By comparison with partial data sets we could then assess the impact of selective taxon sampling strategies on phylogenetic reconstruction and subsequent evolutionary conclusions. METHODOLOGY/PRINCIPAL FINDINGS: Phylogenetic analyses based on maximum parsimony (PAUP, PRAP, Bayesian inference (MrBayes, and maximum likelihood (RAxML were first carried out on the large reference data set (D680. Parameters including tree topology, branch support, and age estimates, were then compared to those obtained from smaller data sets resulting from "classification-guided" (D088 and "phylogeny-guided sampling" (D101. Analyses of D088 failed to fully recover the phylogenetic diversity in Campanula, whereas D101 inferred significantly different branch support and age estimates. CONCLUSIONS/SIGNIFICANCE: A short genomic region with high phylogenetic utility allowed us to easily generate a comprehensive phylogenetic framework for the speciose Campanula clade. Our approach recovered 17 well-supported and circumscribed sub-lineages. Knowing these will be instrumental for developing more specific evolutionary hypotheses and guide future research, we highlight the predictive value of a mass taxon-sampling strategy as a first essential step towards illuminating the detailed

  14. 类群取样与系统发育分析精确度之探索%Taxon sampling and the accuracy of phylogenetic analyses

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    Tracy A. HEATH; Shannon M. HEDTKE; David M. HILLIS

    2008-01-01

    Appropriate and extensive taxon sampling is one of the most important determinants of accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary processes obtained from phylogenetic analyses is improved significantly by thorough taxon sampling efforts. Many recent efforts to improve phylogenetic estimates have focused instead on increasing sequence length or the number of overall characters in the analysis, and this often does have a beneficial effect on the accuracy of phylogenetic analyses. However, phylogenetic analyses of few taxa (but each represented by many characters) can be subject to strong systematic biases, which in turn produce high measures of repeatability (such as bootstrap proportions) in support of incorrect or misleading phylogenetic results. Thus, it is important for phylogeneticists to consider both the sampling of taxa, as well as the sampling of characters, in designing phylogenetic studies. Taxon sampling also improves estimates of evolutionary parameters derived from phylogenetic trees, and is thus important for improved applications of phylogenetic analyses. Analysis of sensitivity to taxon inclusion, the possible effects of long-branch attraction, and sensitivity of parameter estimation for model-based methods should be a part of any careful and thorough phylogenetic analysis. Furthermore, recent improvements in phylogenetic algorithms and in computational power have removed many constraints on analyzing large, thoroughly sampled data sets. Thorough taxon sampling is thus one of the most practical ways to improve the accuracy of phylogenetic estimates, as well as the accuracy of biological inferences that are based on these phylogenetic trees.

  15. Microscopic Lensing by a Dense, Cold Atomic Sample

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    Roof, Stetson; Havey, Mark; Sokolov, I M; Kupriyanov, D V

    2014-01-01

    We demonstrate that a cold, dense sample of 87Rb atoms can exhibit a micron-scale lensing effect, much like that associated with a macroscopically-sized lens. The experiment is carried out in the fashion of traditional z-scan measurements but in much weaker fields and where close attention is paid to the detuning dependence of the transmitted light. The results are interpreted using numerical simulations and by modeling the sample as a thin lens with a spherical focal length.

  16. Comparative analysis of mitochondrial genomes in Diplura (hexapoda, arthropoda): taxon sampling is crucial for phylogenetic inferences.

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    Chen, Wan-Jun; Koch, Markus; Mallatt, Jon M; Luan, Yun-Xia

    2014-01-01

    Two-pronged bristletails (Diplura) are traditionally classified into three major superfamilies: Campodeoidea, Projapygoidea, and Japygoidea. The interrelationships of these three superfamilies and the monophyly of Diplura have been much debated. Few previous studies included Projapygoidea in their phylogenetic considerations, and its position within Diplura still is a puzzle from both morphological and molecular points of view. Until now, no mitochondrial genome has been sequenced for any projapygoid species. To fill in this gap, we determined and annotated the complete mitochondrial genome of Octostigma sinensis (Octostigmatidae, Projapygoidea), and of three more dipluran species, one each from the Campodeidae, Parajapygidae, and Japygidae. All four newly sequenced dipluran mtDNAs encode the same set of genes in the same gene order as shared by most crustaceans and hexapods. Secondary structure truncations have occurred in trnR, trnC, trnS1, and trnS2, and the reduction of transfer RNA D-arms was found to be taxonomically correlated, with Campodeoidea having experienced the most reduction. Partitioned phylogenetic analyses, based on both amino acids and nucleotides of the protein-coding genes plus the ribosomal RNA genes, retrieve significant support for a monophyletic Diplura within Pancrustacea, with Projapygoidea more closely related to Campodeoidea than to Japygoidea. Another key finding is that monophyly of Diplura cannot be recovered unless Projapygoidea is included in the phylogenetic analyses; this explains the dipluran polyphyly found by past mitogenomic studies. Including Projapygoidea increased the sampling density within Diplura and probably helped by breaking up a long-branch-attraction artifact. This finding provides an example of how proper sampling is significant for phylogenetic inference.

  17. Phylogenetic relationships and evolution of pulmonate gastropods (Mollusca): new insights from increased taxon sampling.

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    Dayrat, Benoît; Conrad, Michele; Balayan, Shaina; White, Tracy R; Albrecht, Christian; Golding, Rosemary; Gomes, Suzete R; Harasewych, M G; Martins, António Manuel de Frias

    2011-05-01

    Phylogenetic relationships among higher clades of pulmonate gastropods are reconstructed based on a data set including one nuclear marker (complete ribosomal 18S) and two mitochondrial markers (partial ribosomal 16S and Cytochrome oxidase I) for a total of 96 species. Sequences for 66 of these species are new to science, with a special emphasis on sampling the Ellobiidae, Onchidiidae, and Veronicellidae. Important results include the monophyly of Systellommatophora (Onchidiidae and Veronicellidae) as well as the monophyly of Ellobiidae (including Trimusculus, Otina, and Smeagol). Relationships within Ellobiidae, Onchidiidae, and Veronicellidae are evaluated here for the first time using molecular data. Present results are compared with those from the recent literature, and the current knowledge of phylogenetic relationships among pulmonate gastropods is reviewed: despite many efforts, deep nodes are still uncertain. Identification uncertainties about early fossils of pulmonates are reviewed. Impacts of those phylogenetic and fossil record uncertainties on our understanding of the macro-evolutionary history of pulmonates, especially transitions between aquatic and terrestrial habitats, are discussed.

  18. Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling.

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    Drummond, Christopher S; Eastwood, Ruth J; Miotto, Silvia T S; Hughes, Colin E

    2012-05-01

    Replicate radiations provide powerful comparative systems to address questions about the interplay between opportunity and innovation in driving episodes of diversification and the factors limiting their subsequent progression. However, such systems have been rarely documented at intercontinental scales. Here, we evaluate the hypothesis of multiple radiations in the genus Lupinus (Leguminosae), which exhibits some of the highest known rates of net diversification in plants. Given that incomplete taxon sampling, background extinction, and lineage-specific variation in diversification rates can confound macroevolutionary inferences regarding the timing and mechanisms of cladogenesis, we used Bayesian relaxed clock phylogenetic analyses as well as MEDUSA and BiSSE birth-death likelihood models of diversification, to evaluate the evolutionary patterns of lineage accumulation in Lupinus. We identified 3 significant shifts to increased rates of net diversification (r) relative to background levels in the genus (r = 0.18-0.48 lineages/myr). The primary shift occurred approximately 4.6 Ma (r = 0.48-1.76) in the montane regions of western North America, followed by a secondary shift approximately 2.7 Ma (r = 0.89-3.33) associated with range expansion and diversification of allopatrically distributed sister clades in the Mexican highlands and Andes. We also recovered evidence for a third independent shift approximately 6.5 Ma at the base of a lower elevation eastern South American grassland and campo rupestre clade (r = 0.36-1.33). Bayesian ancestral state reconstructions and BiSSE likelihood analyses of correlated diversification indicated that increased rates of speciation are strongly associated with the derived evolution of perennial life history and invasion of montane ecosystems. Although we currently lack hard evidence for "replicate adaptive radiations" in the sense of convergent morphological and ecological trajectories among species in different clades, these

  19. Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

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    Drummond, Christopher S.; Eastwood, Ruth J.; Miotto, Silvia T. S.; Hughes, Colin E.

    2012-01-01

    Replicate radiations provide powerful comparative systems to address questions about the interplay between opportunity and innovation in driving episodes of diversification and the factors limiting their subsequent progression. However, such systems have been rarely documented at intercontinental scales. Here, we evaluate the hypothesis of multiple radiations in the genus Lupinus (Leguminosae), which exhibits some of the highest known rates of net diversification in plants. Given that incomplete taxon sampling, background extinction, and lineage-specific variation in diversification rates can confound macroevolutionary inferences regarding the timing and mechanisms of cladogenesis, we used Bayesian relaxed clock phylogenetic analyses as well as MEDUSA and BiSSE birth–death likelihood models of diversification, to evaluate the evolutionary patterns of lineage accumulation in Lupinus. We identified 3 significant shifts to increased rates of net diversification (r) relative to background levels in the genus (r = 0.18–0.48 lineages/myr). The primary shift occurred approximately 4.6 Ma (r = 0.48–1.76) in the montane regions of western North America, followed by a secondary shift approximately 2.7 Ma (r = 0.89–3.33) associated with range expansion and diversification of allopatrically distributed sister clades in the Mexican highlands and Andes. We also recovered evidence for a third independent shift approximately 6.5 Ma at the base of a lower elevation eastern South American grassland and campo rupestre clade (r = 0.36–1.33). Bayesian ancestral state reconstructions and BiSSE likelihood analyses of correlated diversification indicated that increased rates of speciation are strongly associated with the derived evolution of perennial life history and invasion of montane ecosystems. Although we currently lack hard evidence for “replicate adaptive radiations” in the sense of convergent morphological and ecological trajectories among species in different

  20. Toward a Tree-of-Life for the boas and pythons: multilocus species-level phylogeny with unprecedented taxon sampling.

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    Graham Reynolds, R; Niemiller, Matthew L; Revell, Liam J

    2014-02-01

    Snakes in the families Boidae and Pythonidae constitute some of the most spectacular reptiles and comprise an enormous diversity of morphology, behavior, and ecology. While many species of boas and pythons are familiar, taxonomy and evolutionary relationships within these families remain contentious and fluid. A major effort in evolutionary and conservation biology is to assemble a comprehensive Tree-of-Life, or a macro-scale phylogenetic hypothesis, for all known life on Earth. No previously published study has produced a species-level molecular phylogeny for more than 61% of boa species or 65% of python species. Using both novel and previously published sequence data, we have produced a species-level phylogeny for 84.5% of boid species and 82.5% of pythonid species, contextualized within a larger phylogeny of henophidian snakes. We obtained new sequence data for three boid, one pythonid, and two tropidophiid taxa which have never previously been included in a molecular study, in addition to generating novel sequences for seven genes across an additional 12 taxa. We compiled an 11-gene dataset for 127 taxa, consisting of the mitochondrial genes CYTB, 12S, and 16S, and the nuclear genes bdnf, bmp2, c-mos, gpr35, rag1, ntf3, odc, and slc30a1, totaling up to 7561 base pairs per taxon. We analyzed this dataset using both maximum likelihood and Bayesian inference and recovered a well-supported phylogeny for these species. We found significant evidence of discordance between taxonomy and evolutionary relationships in the genera Tropidophis, Morelia, Liasis, and Leiopython, and we found support for elevating two previously suggested boid species. We suggest a revised taxonomy for the boas (13 genera, 58 species) and pythons (8 genera, 40 species), review relationships between our study and the many other molecular phylogenetic studies of henophidian snakes, and present a taxonomic database and alignment which may be easily used and built upon by other researchers

  1. Methodology for dense spatial sampling of multicomponent recording of converted waves in shallow marine environments

    NARCIS (Netherlands)

    El Allouche, N.; Drijkoningen, G.G.; Van der Neut, J.R.

    2010-01-01

    A widespread use of converted waves for shallow marine applications is hampered by spatial aliasing and field efficiency. Their short wavelengths require dense spatial sampling which often needs to be achieved by receivers deployed on the seabed. We adopted a new methodology where the dense spatial

  2. Non-monophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA.

    Science.gov (United States)

    Dohrmann, Martin; Voigt, Oliver; Erpenbeck, Dirk; Wörheide, Gert

    2006-09-01

    Calcareous sponges (Porifera, Calcarea) play an important role for our understanding of early metazoan evolution, since several molecular studies suggested their closer relationship to Eumetazoa than to the other two sponge 'classes,' Demospongiae and Hexactinellida. The division of Calcarea into the subtaxa Calcinea and Calcaronea is well established by now, but their internal relationships remain largely unresolved. Here, we estimate phylogenetic relationships within Calcarea in a Bayesian framework, using full-length 18S and partial 28S ribosomal DNA sequences. Both genes were analyzed separately and in combination and were further partitioned by stem and loop regions, the former being modelled to take non-independence of paired sites into account. By substantially increasing taxon sampling, we show that most of the traditionally recognized supraspecific taxa within Calcinea and Calcaronea are not monophyletic, challenging the existing classification system, while monophyly of Calcinea and Calcaronea is again highly supported.

  3. ATLASGAL -- A Galaxy-wide sample of dense filamentary structures

    CERN Document Server

    Li, Guang-Xing; Leurini, S; Csengeri, T; Wyrowski, F; Menten, K M; Schuller, F

    2016-01-01

    [Abridged] Aims. We study the properties of filamentary structures from the ATLASGAL survey. Methods. We use the DisPerSE algorithm to identify spatially coherent structures located across the inner-Galaxy (300 < l < 60 and |b| < 1.5). Results. We have determined distances, masses and physical sizes for 241 of the filamentary structures. We find a median distance of 3.8 kpc, a mean mass of a few 10^3 m_sun, a mean length of ~6pc and a mass-to-length ratio of (M/L) ~200-2000M_sun/ pc. We also find that these filamentary structures are tightly correlated with the spiral arms in longitude and velocity, and that their semi-major axis is preferentially aligned parallel to the Galactic mid-plane and therefore with the direction of large-scale Galactic magnetic field. We find many examples where the dense filaments identified in ATLASGAL are associated with larger scale filamentary structures (~100 pc), and argue that this is likely to be common, and as such these may indicate a connection between large-sca...

  4. Dense mesh sampling for video-based facial animation

    Science.gov (United States)

    Peszor, Damian; Wojciechowska, Marzena

    2016-06-01

    The paper describes an approach for selection of feature points on three-dimensional, triangle mesh obtained using various techniques from several video footages. This approach has a dual purpose. First, it allows to minimize the data stored for the purpose of facial animation, so that instead of storing position of each vertex in each frame, one could store only a small subset of vertices for each frame and calculate positions of others based on the subset. Second purpose is to select feature points that could be used for anthropometry-based retargeting of recorded mimicry to another model, with sampling density beyond that which can be achieved using marker-based performance capture techniques. Developed approach was successfully tested on artificial models, models constructed using structured light scanner, and models constructed from video footages using stereophotogrammetry.

  5. Does better taxon sampling help? A new phylogenetic hypothesis for Sepsidae (Diptera: Cyclorrhapha) based on 50 new taxa and the same old mitochondrial and nuclear markers.

    Science.gov (United States)

    Zhao, Lei; Annie, Ang Shi Hui; Amrita, Srivathsan; Yi, Su Kathy Feng; Rudolf, Meier

    2013-10-01

    We here present a phylogenetic hypothesis for Sepsidae (Diptera: Cyclorrhapha), a group of schizophoran flies with ca. 320 described species that is widely used in sexual selection research. The hypothesis is based on five nuclear and five mitochondrial markers totaling 8813 bp for ca. 30% of the diversity (105 sepsid taxa) and - depending on analysis - six or nine outgroup species. Maximum parsimony (MP), maximum likelihood (ML), and Bayesian inferences (BI) yield overall congruent, well-resolved, and supported trees that are largely unaffected by three different ways to partition the data in BI and ML analyses. However, there are also five areas of uncertainty that affect suprageneric relationships where different analyses yield alternate topologies and MP and ML trees have significant conflict according to Shimodaira-Hasegawa tests. Two of these were already affected by conflict in a previous analysis that was based on the same genes and a subset of 69 species. The remaining three involve newly added taxa or genera whose relationships were previously resolved with low support. We thus find that the denser taxon sample in the present analysis does not reduce the topological conflict that had been identified previously. The present study nevertheless presents a significant contribution to the understanding of sepsid relationships in that 50 additional taxa from 18 genera are added to the Tree-of-Life of Sepsidae and that the placement of most taxa is well supported and robust to different tree reconstruction techniques. Copyright © 2013 Elsevier Inc. All rights reserved.

  6. Image classification with densely sampled image windows and generalized adaptive multiple kernel learning.

    Science.gov (United States)

    Yan, Shengye; Xu, Xinxing; Xu, Dong; Lin, Stephen; Li, Xuelong

    2015-03-01

    We present a framework for image classification that extends beyond the window sampling of fixed spatial pyramids and is supported by a new learning algorithm. Based on the observation that fixed spatial pyramids sample a rather limited subset of the possible image windows, we propose a method that accounts for a comprehensive set of windows densely sampled over location, size, and aspect ratio. A concise high-level image feature is derived to effectively deal with this large set of windows, and this higher level of abstraction offers both efficient handling of the dense samples and reduced sensitivity to misalignment. In addition to dense window sampling, we introduce generalized adaptive l(p)-norm multiple kernel learning (GA-MKL) to learn a robust classifier based on multiple base kernels constructed from the new image features and multiple sets of prelearned classifiers from other classes. With GA-MKL, multiple levels of image features are effectively fused, and information is shared among different classifiers. Extensive evaluation on benchmark datasets for object recognition (Caltech256 and Caltech101) and scene recognition (15Scenes) demonstrate that the proposed method outperforms the state-of-the-art under a broad range of settings.

  7. Ultra-dense EEG sampling results in two-fold increase of functional brain information.

    Science.gov (United States)

    Petrov, Yury; Nador, Jeffrey; Hughes, Christopher; Tran, Stanley; Yavuzcetin, Ozgur; Sridhar, Srinivas

    2014-04-15

    Contemporary high-density electroencephalographic systems (hd-EEG) comprising up to 256 electrodes have inter-electrode separations of 2-4 cm. Because electric currents of the brain are believed to strongly diffuse before reaching the scalp surface, higher-density electrode coverage is often deemed unnecessary. We used an ultra-dense electroencephalography (ud-EEG) sensor array to reveal strong potential variation at 1cm scale and discovered that it reflects functional brain activity. A new classification paradigm demonstrates that ud-EEG provides twice the signal to noise ratio for brain-response classification compared with contemporary hd-EEG. These results suggest a paradigm shift from current thinking by showing that higher spatial resolution sampling of EEG is required and leads to increased functional brain information that is useful for diverse neurological applications.

  8. Homogenization of sample absorption for the imaging of large and dense fossils with synchrotron microtomography.

    Science.gov (United States)

    Sanchez, Sophie; Fernandez, Vincent; Pierce, Stephanie E; Tafforeau, Paul

    2013-09-01

    Propagation phase-contrast synchrotron radiation microtomography (PPC-SRμCT) has proved to be very successful for examining fossils. Because fossils range widely in taphonomic preservation, size, shape and density, X-ray computed tomography protocols are constantly being developed and refined. Here we present a 1-h procedure that combines a filtered high-energy polychromatic beam with long-distance PPC-SRμCT (sample to detector: 4-16 m) and an attenuation protocol normalizing the absorption profile (tested on 13-cm-thick and 5.242 g cm(-3) locally dense samples but applicable to 20-cm-thick samples). This approach provides high-quality imaging results, which show marked improvement relative to results from images obtained without the attenuation protocol in apparent transmission, contrast and signal-to-noise ratio. The attenuation protocol involves immersing samples in a tube filled with aluminum or glass balls in association with a U-shaped aluminum profiler. This technique therefore provides access to a larger dynamic range of the detector used for tomographic reconstruction. This protocol homogenizes beam-hardening artifacts, thereby rendering it effective for use with conventional μCT scanners.

  9. The generation of warm dense matter samples using pulsed-power generators

    Science.gov (United States)

    Gourdain, P. A.; Seyler, C. E.; Knapp, P. F.

    2016-10-01

    Warm dense matter (WDM) bridges the gap between plasma and condensed matter, with densities similar to that of a solid, but temperature on the order of 1 eV. WDM is key to understanding the formation of gaseous giants, Mega-Earths, planetary collisions and inertial fusion implosions. Yet, the quantum properties of WDM and how they are expressed at the macroscopic level are mostly unknown. This paper uses 3-dimensional numerical simulations to show that cm-scale WDM samples can be generated by pulsed-power machines using a fast plasma closing switch, which virtually eliminates the mixing of WDM with other states of matter, allowing the measurement of its physical properties using line average diagnostics. A pre-ionized gas puff is imploded onto a central metal rod. Initially, most of the discharge current flows inside the gas shell. When the shell reaches the rod the full current switches to the rod in less than 10 ns. The subsequent compression produces WDM. We will discuss how an existing platform to generate cm-scale WDM at 20MA on the Z-machine at Sandia National Laboratories. This research is sponsored by DOE.

  10. Metagenomic covariation along densely sampled environmental gradients in the Red Sea

    KAUST Repository

    Thompson, Luke R

    2016-07-15

    Oceanic microbial diversity covaries with physicochemical parameters. Temperature, for example, explains approximately half of global variation in surface taxonomic abundance. It is unknown, however, whether covariation patterns hold over narrower parameter gradients and spatial scales, and extending to mesopelagic depths. We collected and sequenced 45 epipelagic and mesopelagic microbial metagenomes on a meridional transect through the eastern Red Sea. We asked which environmental parameters explain the most variation in relative abundances of taxonomic groups, gene ortholog groups, and pathways—at a spatial scale of <2000 km, along narrow but well-defined latitudinal and depth-dependent gradients. We also asked how microbes are adapted to gradients and extremes in irradiance, temperature, salinity, and nutrients, examining the responses of individual gene ortholog groups to these parameters. Functional and taxonomic metrics were equally well explained (75–79%) by environmental parameters. However, only functional and not taxonomic covariation patterns were conserved when comparing with an intruding water mass with different physicochemical properties. Temperature explained the most variation in each metric, followed by nitrate, chlorophyll, phosphate, and salinity. That nitrate explained more variation than phosphate suggested nitrogen limitation, consistent with low surface N:P ratios. Covariation of gene ortholog groups with environmental parameters revealed patterns of functional adaptation to the challenging Red Sea environment: high irradiance, temperature, salinity, and low nutrients. Nutrient-acquisition gene ortholog groups were anti-correlated with concentrations of their respective nutrient species, recapturing trends previously observed across much larger distances and environmental gradients. This dataset of metagenomic covariation along densely sampled environmental gradients includes online data exploration supplements, serving as a community

  11. Bridging the gap between IMRT and VMAT: Dense angularly sampled and sparse intensity modulated radiation therapy

    Science.gov (United States)

    Li, Ruijiang; Xing, Lei

    2011-01-01

    Purpose: To propose an alternative radiation therapy (RT) planning and delivery scheme with optimal angular beam sampling and intrabeam modulation for improved dose distribution while maintaining high delivery efficiency. Methods: In the proposed approach, coined as dense angularly sampled and sparse intensity modulated RT (DASSIM-RT), a large number of beam angles are used to increase the angular sampling, leading to potentially more conformal dose distributions as compared to conventional IMRT. At the same time, intensity modulation of the incident beams is simplified to eliminate the dispensable segments, compensating the increase in delivery time caused by the increased number of beams and facilitating the plan delivery. In a sense, the proposed approach shifts and transforms, in an optimal fashion, some of the beam segments in conventional IMRT to the added beams. For newly available digital accelerators, the DASSIM-RT delivery can be made very efficient by concatenating the beams so that they can be delivered sequentially without operator’s intervention. Different from VMAT, the level of intensity modulation in DASSIS-RT is field specific and optimized to meet the need of each beam direction. Three clinical cases (a head and neck (HN) case, a pancreas case, and a lung case) are used to evaluate the proposed RT scheme. DASSIM-RT, VMAT, and conventional IMRT plans are compared quantitatively in terms of the conformality index (CI) and delivery efficiency. Results: Plan quality improves generally with the number and intensity modulation of the incident beams. For a fixed number of beams or fixed level of intensity modulation, the improvement saturates after the intensity modulation or number of beams reaches to a certain level. An interplay between the two variables is observed and the saturation point depends on the values of both variables. For all the cases studied here, the CI of DASSIM-RT with 15 beams and 5 intensity levels (0.90, 0.79, and 0.84 for the

  12. Analysis of laser shock experiments on precompressed samples using a quartz reference and application to warm dense hydrogen and helium

    CERN Document Server

    Brygoo, Stephanie; Loubeyre, Paul; Lazicki, Amy E; Hamel, Sebastien; Qi, Tingting; Celliers, Peter M; Coppari, Federica; Eggert, Jon H; Fratanduono, Dayne E; Hicks, Damien G; Rygg, J Ryan; Smith, Raymond F; Swift, Damian C; Collins, Gilbert W; Jeanloz, Raymond

    2015-01-01

    Megabar (1 Mbar = 100 GPa) laser shocks on precompressed samples allow reaching unprecedented high densities and moderately high 10000-100000K temperatures. We describe here a complete analysis framework for the velocimetry (VISAR) and pyrometry (SOP) data produced in these experiments. Since the precompression increases the initial density of both the sample of interest and the quartz reference for pressure-density, reflectivity and temperature measurements, we describe analytical corrections based on available experimental data on warm dense silica and density-functional-theory based molecular dynamics computer simulations. Using our improved analysis framework we report a re-analysis of previously published data on warm dense hydrogen and helium, compare the newly inferred pressure, density and temperature data with most advanced equation of state models and provide updated reflectivity values.

  13. High-resolution three-dimensional holographic display using dense ray sampling from integral imaging.

    Science.gov (United States)

    Wakunami, Koki; Yamaguchi, Masahiro; Javidi, Bahram

    2012-12-15

    We present a high-resolution three-dimensional (3D) holographic display using a set of elemental images obtained by passive sensing integral imaging (II). Hologram calculations using a high-density ray-sampling plane are achieved from the elemental images captured by II. In II display, ray sampling by lenslet array and light diffraction limits the achievable resolution. Our approach can improve the resolution since target objects are captured in focus and then light-ray information is interpolated and resampled with higher density on ray-sampling plane located near the object to be converted into the wavefront. Numerical experimental results show that the 3D scene, composed of plural objects at different depths from the display, can be reconstructed with order of magnitude higher resolution by the proposed technique.

  14. Nested Markov chain Monte Carlo sampling of a density functional theory potential: equilibrium thermodynamics of dense fluid nitrogen.

    Science.gov (United States)

    Coe, Joshua D; Sewell, Thomas D; Shaw, M Sam

    2009-08-21

    An optimized variant of the nested Markov chain Monte Carlo [n(MC)(2)] method [J. Chem. Phys. 130, 164104 (2009)] is applied to fluid N(2). In this implementation of n(MC)(2), isothermal-isobaric (NPT) ensemble sampling on the basis of a pair potential (the "reference" system) is used to enhance the efficiency of sampling based on Perdew-Burke-Ernzerhof density functional theory with a 6-31G(*) basis set (PBE6-31G(*), the "full" system). A long sequence of Monte Carlo steps taken in the reference system is converted into a trial step taken in the full system; for a good choice of reference potential, these trial steps have a high probability of acceptance. Using decorrelated samples drawn from the reference distribution, the pressure and temperature of the full system are varied such that its distribution overlaps maximally with that of the reference system. Optimized pressures and temperatures then serve as input parameters for n(MC)(2) sampling of dense fluid N(2) over a wide range of thermodynamic conditions. The simulation results are combined to construct the Hugoniot of nitrogen fluid, yielding predictions in excellent agreement with experiment.

  15. A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

    Science.gov (United States)

    Ragonnet-Cronin, Manon L.; Shilaih, Mohaned; Günthard, Huldrych F.; Hodcroft, Emma B.; Böni, Jürg; Fearnhill, Esther; Dunn, David; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Yang, Wan-Lin; Brown, Alison E.; Lycett, Samantha J.; Kouyos, Roger; Brown, Andrew J. Leigh

    2016-09-01

    Phylogenetic clustering approaches can elucidate HIV transmission dynamics. Comparisons across countries are essential for evaluating public health policies. Here, we used a standardised approach to compare the UK HIV Drug Resistance Database and the Swiss HIV Cohort Study while maintaining data-protection requirements. Clusters were identified in subtype A1, B and C pol phylogenies. We generated degree distributions for each risk group and compared distributions between countries using Kolmogorov-Smirnov (KS) tests, Degree Distribution Quantification and Comparison (DDQC) and bootstrapping. We used logistic regression to predict cluster membership based on country, sampling date, risk group, ethnicity and sex. We analysed >8,000 Swiss and >30,000 UK subtype B sequences. At 4.5% genetic distance, the UK was more clustered and MSM and heterosexual degree distributions differed significantly by the KS test. The KS test is sensitive to variation in network scale, and jackknifing the UK MSM dataset to the size of the Swiss dataset removed the difference. Only heterosexuals varied based on the DDQC, due to UK male heterosexuals who clustered exclusively with MSM. Their removal eliminated this difference. In conclusion, the UK and Swiss HIV epidemics have similar underlying dynamics and observed differences in clustering are mainly due to different population sizes.

  16. A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.

    Science.gov (United States)

    Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; Böni, Jürg; Fearnhill, Esther; Dunn, David; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Yang, Wan-Lin; Brown, Alison E; Lycett, Samantha J; Kouyos, Roger; Brown, Andrew J Leigh

    2016-09-19

    Phylogenetic clustering approaches can elucidate HIV transmission dynamics. Comparisons across countries are essential for evaluating public health policies. Here, we used a standardised approach to compare the UK HIV Drug Resistance Database and the Swiss HIV Cohort Study while maintaining data-protection requirements. Clusters were identified in subtype A1, B and C pol phylogenies. We generated degree distributions for each risk group and compared distributions between countries using Kolmogorov-Smirnov (KS) tests, Degree Distribution Quantification and Comparison (DDQC) and bootstrapping. We used logistic regression to predict cluster membership based on country, sampling date, risk group, ethnicity and sex. We analysed >8,000 Swiss and >30,000 UK subtype B sequences. At 4.5% genetic distance, the UK was more clustered and MSM and heterosexual degree distributions differed significantly by the KS test. The KS test is sensitive to variation in network scale, and jackknifing the UK MSM dataset to the size of the Swiss dataset removed the difference. Only heterosexuals varied based on the DDQC, due to UK male heterosexuals who clustered exclusively with MSM. Their removal eliminated this difference. In conclusion, the UK and Swiss HIV epidemics have similar underlying dynamics and observed differences in clustering are mainly due to different population sizes.

  17. 基于Rag1基因序列变异的鲤形目鱼类系统发育重建:采样策略对生命之树的影响%Inferring the Tree of Life of the order Cypriniformes, the earth's most diverse clade of freshwater fishes: Implications of varied taxon and character sampling

    Institute of Scientific and Technical Information of China (English)

    Richard L. MAYDEN; Phillip M. HARRIS; Junbing LI; Xuzhen WANG; Kenji SAITOH; Shunping HE; Huanzhang LIU; Yiyu CHEN; Mutsumi NISHIDA; Masaki MIYA; Kevin L. TANG; Robert M. WOOD; Wei-Jen CHEN; Mary K. AGNEW; Kevin W. CONWAY; Lei YANG; Andrew M. SIMONS; Henry L. BART

    2008-01-01

    problems. The recent Cypriniformes Tree of Life initiative is an effort to achieve this goal with morphological and molecular (mitochondrial and nuclear) data. In this early synthesis of our understanding of the phylogenetic relationships of these fishes, all types of data have contributed historically to improving our understanding, but not all analyses are complementary in taxon sampling, thus precluding direct understanding of the impact of taxon sampling on achieving accurate phylogenetic inferences. However, recent molecular studies do provide some insight and in some instances taxon sampling can be implicated as a variable that can influence sister group relationships. Other instances may also exist but without inclusion of more taxa for both mitochondrial and nuclear genes, one cannot distinguish between inferences being dictated by taxon sampling or the origins of the molecular data.

  18. Estimates of the hydrologic impact of drilling water on core samples taken from partially saturated densely welded tuff

    Energy Technology Data Exchange (ETDEWEB)

    Buscheck, T.A.; Nitao, J.J.

    1987-09-01

    The purpose of this work is to determine the extent to which drill water might be expected to be imbibed by core samples taken from densely welded tuff. In a related experimental study conducted in G-Tunnel, drill water imbibition by the core samples was observed to be minimal. Calculations were carried out with the TOUGH code with the intent of corroborating the imbibition observations. Due to the absence of hydrologic data pertaining directly to G-Tunnel welded tuff, it was necessary to apply data from a similar formation. Because the moisture retention curve was not available for imbibition conditions, the drainage curve was applied to the model. The poor agreement between the observed and calculated imbibition data is attributed primarily to the inappropriateness of the drainage curve. Also significant is the value of absolute permeability (k) assumed in the model. Provided that the semi-log plot of the drainage and imbibition moisture retention curves are parallel within the saturation range of interest, a simple relationship exists between the moisture retention curve, k, and porosity ({phi}) which are assumed in the model and their actual values. If k and {phi} are known, we define the hysteresis factor {lambda} to be the ratio of the imbibition and drainage suction pressures for any saturation within the range of interest. If k and {phi} are unknown, {lambda} also accounts for the uncertainties in their values. Both the experimental and modeling studies show that drill water imbibition by the core has a minimal effect on its saturation state. 22 refs., 6 figs., 2 tabs.

  19. Phylogenomics with incomplete taxon coverage: the limits to inference

    Directory of Open Access Journals (Sweden)

    McMahon Michelle M

    2010-05-01

    Full Text Available Abstract Background Phylogenomic studies based on multi-locus sequence data sets are usually characterized by partial taxon coverage, in which sequences for some loci are missing for some taxa. The impact of missing data has been widely studied in phylogenetics, but it has proven difficult to distinguish effects due to error in tree reconstruction from effects due to missing data per se. We approach this problem using a explicitly phylogenomic criterion of success, decisiveness, which refers to whether the pattern of taxon coverage allows for uniquely defining a single tree for all taxa. Results We establish theoretical bounds on the impact of missing data on decisiveness. Results are derived for two contexts: a fixed taxon coverage pattern, such as that observed from an already assembled data set, and a randomly generated pattern derived from a process of sampling new data, such as might be observed in an ongoing comparative genomics sequencing project. Lower bounds on how many loci are needed for decisiveness are derived for the former case, and both lower and upper bounds for the latter. When data are not decisive for all trees, we estimate the probability of decisiveness and the chances that a given edge in the tree will be distinguishable. Theoretical results are illustrated using several empirical examples constructed by mining sequence databases, genomic libraries such as ESTs and BACs, and complete genome sequences. Conclusion Partial taxon coverage among loci can limit phylogenomic inference by making it impossible to distinguish among multiple alternative trees. However, even though lack of decisiveness is typical of many sparse phylogenomic data sets, it is often still possible to distinguish a large fraction of edges in the tree.

  20. Dense Breasts

    Science.gov (United States)

    ... also appear white on mammography, they can be hidden by or within dense breast tissue. Other imaging ... understanding of the possible charges you will incur. Web page review process: This Web page is reviewed ...

  1. Bioenhanced dissolution of dense non-aqueous phase of trichloroethylene as affected by iron reducing conditions: model systems and environmental samples.

    Science.gov (United States)

    Paul, Laiby; Smolders, Erik

    2015-01-01

    The anaerobic biotransformation of trichloroethylene (TCE) can be affected by competing electron acceptors such as Fe (III). This study assessed the role of Fe (III) reduction on the bioenhanced dissolution of TCE dense non-aqueous phase liquid (DNAPL). Columns were set up as 1-D diffusion cells consisting of a lower DNAPL layer, a layer with an aquifer substratum and an upper water layer that is regularly refreshed. The substrata used were either inert sand or sand coated with 2-line ferrihydrite (HFO) or two environmental Fe (III) containing samples. The columns were inoculated with KB-1 and were repeatedly fed with formate. In none of the diffusion cells, vinyl chloride or ethene was detected while dissolved and extractable Fe (II) increased strongly during 60 d of incubation. The cis-DCE concentration peaked at 4.0 cm from the DNAPL (inert sand) while it was at 3.4 cm (sand+HFO), 1.7 cm and 2.5 cm (environmental samples). The TCE concentration gradients near the DNAPL indicate that the DNAPL dissolution rate was larger than that in an abiotic cell by factors 1.3 (inert sand), 1.0 (sand+HFO) and 2.2 (both environmental samples). This results show that high bioavailable Fe (III) in HFO reduces the TCE degradation by competitive Fe (III) reduction, yielding lower bioenhanced dissolution. However, Fe (III) reduction in environmental samples was not reducing TCE degradation and the dissolution factor was even larger than that of inert sand. It is speculated that physical factors, e.g. micro-niches in the environmental samples protect microorganisms from toxic concentrations of TCE.

  2. Taxon names of the Tricladida maricola (Platyhelminthes): additions and emendations

    NARCIS (Netherlands)

    Sluys, Ronald; Kawakatsu, Masaharu

    1995-01-01

    We formally correct the spelling of several taxon names of marine planarians. The authorship and date of publication are given for all current higher taxa (from the rank of subfamily and higher) in the Tricladida Maricola.

  3. Fast simulated annealing and adaptive Monte Carlo sampling based parameter optimization for dense optical-flow deformable image registration of 4DCT lung anatomy

    Science.gov (United States)

    Dou, Tai H.; Min, Yugang; Neylon, John; Thomas, David; Kupelian, Patrick; Santhanam, Anand P.

    2016-03-01

    Deformable image registration (DIR) is an important step in radiotherapy treatment planning. An optimal input registration parameter set is critical to achieve the best registration performance with the specific algorithm. Methods In this paper, we investigated a parameter optimization strategy for Optical-flow based DIR of the 4DCT lung anatomy. A novel fast simulated annealing with adaptive Monte Carlo sampling algorithm (FSA-AMC) was investigated for solving the complex non-convex parameter optimization problem. The metric for registration error for a given parameter set was computed using landmark-based mean target registration error (mTRE) between a given volumetric image pair. To reduce the computational time in the parameter optimization process, a GPU based 3D dense optical-flow algorithm was employed for registering the lung volumes. Numerical analyses on the parameter optimization for the DIR were performed using 4DCT datasets generated with breathing motion models and open-source 4DCT datasets. Results showed that the proposed method efficiently estimated the optimum parameters for optical-flow and closely matched the best registration parameters obtained using an exhaustive parameter search method.

  4. Taxon lists for studies of modern nannoplankton

    DEFF Research Database (Denmark)

    Jordan, R.W.; Broerse, A.T.C.; Hagino, K.;

    2000-01-01

    Six studies in this special issue dealt with modern nannoplankton assemblages. In total during these studies 552 samples were analysed and about 180,000 specimens identified, from 152 species. This paper provides a unified list of taxa from these studies, records the presence/absence of each...

  5. Taxon-specific responses of Southern Ocean diatoms to Fe enrichment revealed by synchrotron radiation FTIR microspectroscopy

    Directory of Open Access Journals (Sweden)

    O. Sackett

    2014-05-01

    Full Text Available Photosynthesis by marine diatoms contributes substantially to global biogeochemical cycling and ecosystem productivity. It is widely accepted that diatoms are extremely sensitive to changes in Fe availability, with numerous in situ experiments demonstrating rapid growth and increased export of elements (e.g. C, Si and Fe from surface waters as a result of Fe addition. Less is known about the effects of Fe enrichment on the phenotypes of diatoms, such as associated changes in nutritional value, furthermore data on taxon-specific responses is almost non-existent. Enhanced supply of nutrient-rich waters along the coast of the subantarctic Kerguelen Island provide a valuable opportunity to examine the responses of phytoplankton to natural Fe enrichment. Here we demonstrate the use of synchrotron radiation Fourier Transform Infrared (SR-FTIR microspectroscopy to analyse changes in the macromolecular composition of diatoms collected along the coast and plateau of Kerguelen Island, Southern Ocean. SR-FTIR microspectroscopy enabled the analysis of individual diatom cells from mixed communities of field-collected samples, thereby providing insight into in situ taxon-specific responses in relation to changes in Fe availability. Phenotypic responses were taxon-specific in terms of intraspecific variability and changes in proteins, amino acids, phosphorylated molecules, silicate and carbohydrates. In contrast to some previous studies, silicate levels increased under Fe enrichment, in conjunction with increases in carbohydrate stores. The highly abundant taxon Fragilariopsis kerguelensis displayed a higher level of phenotypic plasticity than Pseudo-nitzschia spp., while analysis of the data pooled across all measured taxa showed different patterns in macromolecular composition compared to those for individual taxon. This study demonstrates that taxon-specific responses to Fe enrichment may not always be accurately reflected by bulk community measurements

  6. Dose optimization with first-order total-variation minimization for dense angularly sampled and sparse intensity modulated radiation therapy (DASSIM-RT).

    Science.gov (United States)

    Kim, Hojin; Li, Ruijiang; Lee, Rena; Goldstein, Thomas; Boyd, Stephen; Candes, Emmanuel; Xing, Lei

    2012-07-01

    A new treatment scheme coined as dense angularly sampled and sparse intensity modulated radiation therapy (DASSIM-RT) has recently been proposed to bridge the gap between IMRT and VMAT. By increasing the angular sampling of radiation beams while eliminating dispensable segments of the incident fields, DASSIM-RT is capable of providing improved conformity in dose distributions while maintaining high delivery efficiency. The fact that DASSIM-RT utilizes a large number of incident beams represents a major computational challenge for the clinical applications of this powerful treatment scheme. The purpose of this work is to provide a practical solution to the DASSIM-RT inverse planning problem. The inverse planning problem is formulated as a fluence-map optimization problem with total-variation (TV) minimization. A newly released L1-solver, template for first-order conic solver (TFOCS), was adopted in this work. TFOCS achieves faster convergence with less memory usage as compared with conventional quadratic programming (QP) for the TV form through the effective use of conic forms, dual-variable updates, and optimal first-order approaches. As such, it is tailored to specifically address the computational challenges of large-scale optimization in DASSIM-RT inverse planning. Two clinical cases (a prostate and a head and neck case) are used to evaluate the effectiveness and efficiency of the proposed planning technique. DASSIM-RT plans with 15 and 30 beams are compared with conventional IMRT plans with 7 beams in terms of plan quality and delivery efficiency, which are quantified by conformation number (CN), the total number of segments and modulation index, respectively. For optimization efficiency, the QP-based approach was compared with the proposed algorithm for the DASSIM-RT plans with 15 beams for both cases. Plan quality improves with an increasing number of incident beams, while the total number of segments is maintained to be about the same in both cases. For the

  7. The dissociative experiences taxon is related to fantasy proneness.

    Science.gov (United States)

    Giesbrecht, Timo; Merckelbach, Harald; Geraerts, Elke

    2007-09-01

    Some authors have argued that nonpathological dissociation should be distinguished from a taxon form of pathological dissociation, which is indexed by the Dissociative Experiences Scale Taxon (DES-T). We tested to what extent DES-T scores are independent from fantasy immersion and whether DES-T scores are uniquely related to trauma self-reports. To this end, subsamples of undergraduate students (n = 930), healthy adults (n = 20), schizophrenic patients (n = 22), borderline personality disordered patients (n = 20), patients with mood disorder without psychosis (n = 19), and women with a history of childhood sexual abuse (n = 55) completed the Dissociative Experiences Scale and a measure of fantasy immersion. DES-T scores were related to absorption and fantasy immersion to a lesser extent than the original DES. However, the fact that nontrivial percentages within all groups, except for the healthy adults, were classified as taxon members casts doubts on the assumption that DES-T is a reliable index of pathological dissociation. Also, we found that the DES-T was not exclusively related to reports of childhood sexual abuse.

  8. Dense topological spaces and dense continuity

    Science.gov (United States)

    Aldwoah, Khaled A.

    2013-09-01

    There are several attempts to generalize (or "widen") the concept of topological space. This paper uses equivalence relations to generalize the concept of topological space via the concept of equivalence relations. By the generalization, we can introduce from particular topology on a nonempty set X many new topologies, we call anyone of these new topologies a dense topology. In addition, we formulate some simple properties of dense topologies and study suitable generalizations of the concepts of limit points, closeness and continuity, as well as Jackson, Nörlund and Hahn dense topologies.

  9. Chemical composition and structural phase changes of Pd sample and properties of novel synthesized structure at dense deuterium gas under irradiation by γ-quanta

    Science.gov (United States)

    Didyk, A. Yu.; Wiśniewski, R.

    2012-12-01

    Studies have been carried out into the element composition of Pd and brass with associated materials and synthesized novel structure, placed in dense deuterium gas in a deuterium high-pressure chamber (DHPC) under the pressure 3 kbar and irradiated with γ-quanta of energy up to 8.8 MeV. Using the methods of scanning electron microscopy, microelement chemical analysis and X-ray diffraction, it was determined that in the absence in the chamber volume and walls of all HPC-forming materials the synthesized structure is largely composed of alumosilicates and Al and Si oxides with high content of Ti compounds as rutile TiO2. Pd1.5D2. Considerable anomalies in the chemical composition were found both in the surface and at large depth in a Pd specimen. The entire Pd surface turned into a structure comprised of Pd clusters, Cu and Zn compounds, with a notable content of Mg, Al, S, Si, K, Ca, Ti and Fe compounds. Results of evaluative calculations, including computation of the Q-value, are presented for nuclear reactions produced in a saturated with deuterium Pd specimen and dense deuterium gas under the action of γ-quanta, neutrons and protons of energies up to E n + E p ≈ E γ - E D MeV generated by deuteron fission. The obtained results can be explained by "collective effects" as chain reactions caused by deuteron fission induced by protons ( E p > 3.39 MeV) and neutrons ( E n > 2.25 MeV), as well as by thermonuclear synthesis of deuterium atoms elastically scattered by protons of energies up to E P < E γ - E D MeV.

  10. DENSE MEDIUM CYCLONE OPTIMIZATON

    Energy Technology Data Exchange (ETDEWEB)

    Gerald H. Luttrell; Chris J. Barbee; Peter J. Bethell; Chris J. Wood

    2005-06-30

    Dense medium cyclones (DMCs) are known to be efficient, high-tonnage devices suitable for upgrading particles in the 50 to 0.5 mm size range. This versatile separator, which uses centrifugal forces to enhance the separation of fine particles that cannot be upgraded in static dense medium separators, can be found in most modern coal plants and in a variety of mineral plants treating iron ore, dolomite, diamonds, potash and lead-zinc ores. Due to the high tonnage, a small increase in DMC efficiency can have a large impact on plant profitability. Unfortunately, the knowledge base required to properly design and operate DMCs has been seriously eroded during the past several decades. In an attempt to correct this problem, a set of engineering tools have been developed to allow producers to improve the efficiency of their DMC circuits. These tools include (1) low-cost density tracers that can be used by plant operators to rapidly assess DMC performance, (2) mathematical process models that can be used to predict the influence of changes in operating and design variables on DMC performance, and (3) an expert advisor system that provides plant operators with a user-friendly interface for evaluating, optimizing and trouble-shooting DMC circuits. The field data required to develop these tools was collected by conducting detailed sampling and evaluation programs at several industrial plant sites. These data were used to demonstrate the technical, economic and environmental benefits that can be realized through the application of these engineering tools.

  11. Statoviruses, A novel taxon of RNA viruses present in the gastrointestinal tracts of diverse mammals.

    Science.gov (United States)

    Janowski, Andrew B; Krishnamurthy, Siddharth R; Lim, Efrem S; Zhao, Guoyan; Brenchley, Jason M; Barouch, Dan H; Thakwalakwa, Chrissie; Manary, Mark J; Holtz, Lori R; Wang, David

    2017-04-01

    Next-generation sequencing has expanded our understanding of the viral populations that constitute the mammalian virome. We describe a novel taxon of viruses named Statoviruses, for Stool associated Tombus-like viruses, present in multiple metagenomic datasets. These viruses define a novel clade that is phylogenetically related to the RNA virus families Tombusviridae and Flaviviridae. Five distinct statovirus types were identified in human, macaque, mouse, and cow gastrointestinal tract samples. The prototype genome, statovirus A, was frequently identified in macaque stool samples from multiple geographically distinct cohorts. Another genome, statovirus C1, was discovered in a stool sample from a human child with fever, cough, and rash. Further experimental data will clarify whether these viruses are infectious to mammals or if they originate from another source present in the mammalian gastrointestinal tract.

  12. Dense with Sense

    Science.gov (United States)

    Aletras, Anthony H.; Ingkanisorn, W. Patricia; Mancini, Christine; Arai, Andrew E.

    2005-09-01

    Displacement encoding with stimulated echoes (DENSE) with a low encoding strength phase-cycled meta-DENSE readout and a two fold SENSE acceleration ( R = 2) is described. This combination reduces total breath-hold times for increased patient comfort during cardiac regional myocardial contractility studies. Images from phantoms, normal volunteers, and a patient are provided to demonstrate the SENSE-DENSE combination of methods. The overall breath-hold time is halved while preserving strain map quality.

  13. Atoms in dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    More, R.M.

    1986-01-01

    Recent experiments with high-power pulsed lasers have strongly encouraged the development of improved theoretical understanding of highly charged ions in a dense plasma environment. This work examines the theory of dense plasmas with emphasis on general rules which govern matter at extreme high temperature and density. 106 refs., 23 figs.

  14. Quantum dense key distribution

    CERN Document Server

    Degiovanni, I P; Castelletto, S; Rastello, M L; Bovino, F A; Colla, A M; Castagnoli, G C

    2004-01-01

    This paper proposes a new protocol for quantum dense key distribution. This protocol embeds the benefits of a quantum dense coding and a quantum key distribution and is able to generate shared secret keys four times more efficiently than BB84 one. We hereinafter prove the security of this scheme against individual eavesdropping attacks, and we present preliminary experimental results, showing its feasibility.

  15. A Standardized Reference Data Set for Vertebrate Taxon Name Resolution.

    Directory of Open Access Journals (Sweden)

    Paula F Zermoglio

    Full Text Available Taxonomic names associated with digitized biocollections labels have flooded into repositories such as GBIF, iDigBio and VertNet. The names on these labels are often misspelled, out of date, or present other problems, as they were often captured only once during accessioning of specimens, or have a history of label changes without clear provenance. Before records are reliably usable in research, it is critical that these issues be addressed. However, still missing is an assessment of the scope of the problem, the effort needed to solve it, and a way to improve effectiveness of tools developed to aid the process. We present a carefully human-vetted analysis of 1000 verbatim scientific names taken at random from those published via the data aggregator VertNet, providing the first rigorously reviewed, reference validation data set. In addition to characterizing formatting problems, human vetting focused on detecting misspelling, synonymy, and the incorrect use of Darwin Core. Our results reveal a sobering view of the challenge ahead, as less than 47% of name strings were found to be currently valid. More optimistically, nearly 97% of name combinations could be resolved to a currently valid name, suggesting that computer-aided approaches may provide feasible means to improve digitized content. Finally, we associated names back to biocollections records and fit logistic models to test potential drivers of issues. A set of candidate variables (geographic region, year collected, higher-level clade, and the institutional digitally accessible data volume and their 2-way interactions all predict the probability of records having taxon name issues, based on model selection approaches. We strongly encourage further experiments to use this reference data set as a means to compare automated or computer-aided taxon name tools for their ability to resolve and improve the existing wealth of legacy data.

  16. A Standardized Reference Data Set for Vertebrate Taxon Name Resolution.

    Science.gov (United States)

    Zermoglio, Paula F; Guralnick, Robert P; Wieczorek, John R

    2016-01-01

    Taxonomic names associated with digitized biocollections labels have flooded into repositories such as GBIF, iDigBio and VertNet. The names on these labels are often misspelled, out of date, or present other problems, as they were often captured only once during accessioning of specimens, or have a history of label changes without clear provenance. Before records are reliably usable in research, it is critical that these issues be addressed. However, still missing is an assessment of the scope of the problem, the effort needed to solve it, and a way to improve effectiveness of tools developed to aid the process. We present a carefully human-vetted analysis of 1000 verbatim scientific names taken at random from those published via the data aggregator VertNet, providing the first rigorously reviewed, reference validation data set. In addition to characterizing formatting problems, human vetting focused on detecting misspelling, synonymy, and the incorrect use of Darwin Core. Our results reveal a sobering view of the challenge ahead, as less than 47% of name strings were found to be currently valid. More optimistically, nearly 97% of name combinations could be resolved to a currently valid name, suggesting that computer-aided approaches may provide feasible means to improve digitized content. Finally, we associated names back to biocollections records and fit logistic models to test potential drivers of issues. A set of candidate variables (geographic region, year collected, higher-level clade, and the institutional digitally accessible data volume) and their 2-way interactions all predict the probability of records having taxon name issues, based on model selection approaches. We strongly encourage further experiments to use this reference data set as a means to compare automated or computer-aided taxon name tools for their ability to resolve and improve the existing wealth of legacy data.

  17. Modelling dense relational data

    DEFF Research Database (Denmark)

    Herlau, Tue; Mørup, Morten; Schmidt, Mikkel Nørgaard;

    2012-01-01

    Relational modelling classically consider sparse and discrete data. Measures of influence computed pairwise between temporal sources naturally give rise to dense continuous-valued matrices, for instance p-values from Granger causality. Due to asymmetry or lack of positive definiteness they are no......Relational modelling classically consider sparse and discrete data. Measures of influence computed pairwise between temporal sources naturally give rise to dense continuous-valued matrices, for instance p-values from Granger causality. Due to asymmetry or lack of positive definiteness...... they are not naturally suited for kernel K-means. We propose a generative Bayesian model for dense matrices which generalize kernel K-means to consider off-diagonal interactions in matrices of interactions, and demonstrate its ability to detect structure on both artificial data and two real data sets....

  18. Sampling

    CERN Document Server

    Thompson, Steven K

    2012-01-01

    Praise for the Second Edition "This book has never had a competitor. It is the only book that takes a broad approach to sampling . . . any good personal statistics library should include a copy of this book." —Technometrics "Well-written . . . an excellent book on an important subject. Highly recommended." —Choice "An ideal reference for scientific researchers and other professionals who use sampling." —Zentralblatt Math Features new developments in the field combined with all aspects of obtaining, interpreting, and using sample data Sampling provides an up-to-date treat

  19. Taxon (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...Artio About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Taxon (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive ...

  20. Taxon (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available [ Credits ] BLAST Search Image Search Home About Archive Update History Contact us ...Artio About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Taxon (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive ...

  1. Dense Plasma Focus Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Li, Hui [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Li, Shengtai [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Jungman, Gerard [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Hayes-Sterbenz, Anna Catherine [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-08-31

    The mechanisms for pinch formation in Dense Plasma Focus (DPF) devices, with the generation of high-energy ions beams and subsequent neutron production over a relatively short distance, are not fully understood. Here we report on high-fidelity 2D and 3D numerical magnetohydrodynamic (MHD) simulations using the LA-COMPASS code to study the pinch formation dynamics and its associated instabilities and neutron production.

  2. The genus Nonomuraea: A review of a rare actinomycete taxon for novel metabolites.

    Science.gov (United States)

    Sungthong, Rungroch; Nakaew, Nareeluk

    2015-05-01

    The genus Nonomuraea is a rare actinomycete taxon with a long taxonomic history, while its generic description was recently emended. The genus is less known among the rare actinomycete genera as its taxonomic position was revised several times. It can be found in diverse ecological niches, while most of its member species were isolated from soil samples. However, new trends to discover the genus in other habitats are increasing. Generic abundance of the genus was found to be dependent on geographical changes. Novel sources together with selective and invented isolation techniques might increase a chance to explore the genus and its novel candidates. Interestingly, some of its members have been revealed as a valuable source of novel metabolites for medical and industrial purposes. Broad-range of potent bioactive compounds including antimicrobial, anticancer, and antipsychotic substances, broad-spectrum antibiotics and biocatalysts can be synthesized by the genus. In order to investigate biosynthetic pathways of the bioactive compounds and self-resistant mechanisms to these compounds, the links from genes to metabolites have yet been needed for further discovery and biotechnological development of the genus Nonomuraea. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. Revisión taxonómica de la familia Celastraceae para la flora de Colombia Revisión taxonómica de la familia Celastraceae para la flora de Colombia

    Directory of Open Access Journals (Sweden)

    Fernandez Alonso José Luis

    2000-06-01

    Full Text Available ABSTRACTTaxonomic processing of the Celastraceae was made based on morphological characters andpollen from exsiccates pertaining to the different herbaria from Colombia an some fromoutside: MO, NY y US, along with characters taken directly from plants in the field,concatenating with the distributions patterns. Besides the taxonomical study, a review of thisplant group nomenclature was made, in order to establish the valid names, those ones whichare synonymous, and species location. The characters established in the descriptions of thespecies were compared with the observed ones in the study material. The study of pollen tookinto account grain type, opening of the pores, presence of rims and ribs ambit, exine, sexine andnexine, reticulation and measurements including equatorial and polar axis and the ratio long-width of pores and colpes. Fourteen pollen samples were analyzed, belonging to 8 nativegenera, revealing that palinology makes valuable contributions in the boundary of taxons,providing valid characters, that they are complemented with the other morphologic characters.The taxonomic description of the family fits with the Colombian constituent taxons.Dichotomizing keys were made in order to identify genera and species, and descriptions of eachone of the species, as well as their distribution, citation studied material of each taxon and insome cases illustrations of the species, were drawn at least one for each genus. Eigth native and1 cultivated genera were found: Celastrus 4, andean and subandean woody scandent species.Crossopetalum: 2 species of islands of Tintipán and San Andrés and Providencia. Goupia: 1species from equatorial rain forest. Gymnosporia: 2 species, one of forest of the median valleyof Magdalena and the other of the andean and subandean forest. Maytenus considered aspreliminary synopsis, with 26 species coming of different habitats. Perrottetia with 10 species,4 of these new; 1 species from piedemonte, the rest live in

  4. The evolutionary diversification of parrots supports a taxon pulse model with multiple trans-oceanic dispersal events and local radiations.

    Science.gov (United States)

    Schweizer, Manuel; Seehausen, Ole; Güntert, Marcel; Hertwig, Stefan T

    2010-03-01

    Vicariance is thought to have played a major role in the evolution of modern parrots. However, as the relationships especially of the African taxa remained mostly unresolved, it has been difficult to draw firm conclusions about the roles of dispersal and vicariance. Our analyses using the broadest taxon sampling of old world parrots ever based on 3219bp of three nuclear genes revealed well-resolved and congruent phylogenetic hypotheses. Agapornis of Africa and Madagascar was found to be the sister group to Loriculus of Australasia and Indo-Malayasia and together they clustered with the Australasian Loriinae, Cyclopsittacini and Melopsittacus. Poicephalus and Psittacus from mainland Africa formed the sister group of the Neotropical Arini and Coracopsis from Madagascar and adjacent islands may be the closest relative of Psittrichas from New Guinea. These biogeographic relationships are best explained by independent colonization of the African continent via trans-oceanic dispersal from Australasia and Antarctica in the Paleogene following what may have been vicariance events in the late Cretaceous and/or early Paleogene. Our data support a taxon pulse model for the diversification of parrots whereby trans-oceanic dispersal played a more important role than previously thought and was the prerequisite for range expansion into new continents.

  5. Warm dense crystallography

    Science.gov (United States)

    Valenza, Ryan A.; Seidler, Gerald T.

    2016-03-01

    The intense femtosecond-scale pulses from x-ray free electron lasers (XFELs) are able to create and interrogate interesting states of matter characterized by long-lived nonequilibrium semicore or core electron occupancies or by the heating of dense phases via the relaxation cascade initiated by the photoelectric effect. We address here the latter case of "warm dense matter" (WDM) and investigate the observable consequences of x-ray heating of the electronic degrees of freedom in crystalline systems. We report temperature-dependent density functional theory calculations for the x-ray diffraction from crystalline LiF, graphite, diamond, and Be. We find testable, strong signatures of condensed-phase effects that emphasize the importance of wide-angle scattering to study nonequilibrium states. These results also suggest that the reorganization of the valence electron density at eV-scale temperatures presents a confounding factor to achieving atomic resolution in macromolecular serial femtosecond crystallography (SFX) studies at XFELs, as performed under the "diffract before destroy" paradigm.

  6. Dense Suspension Splash

    Science.gov (United States)

    Zhang, Wendy; Dodge, Kevin M.; Peters, Ivo R.; Ellowitz, Jake; Klein Schaarsberg, Martin H.; Jaeger, Heinrich M.

    2014-03-01

    Upon impact onto a solid surface at several meters-per-second, a dense suspension plug splashes by ejecting liquid-coated particles. We study the mechanism for splash formation using experiments and a numerical model. In the model, the dense suspension is idealized as a collection of cohesionless, rigid grains with finite surface roughness. The grains also experience lubrication drag as they approach, collide inelastically and rebound away from each other. Simulations using this model reproduce the measured momentum distribution of ejected particles. They also provide direct evidence supporting the conclusion from earlier experiments that inelastic collisions, rather than viscous drag, dominate when the suspension contains macroscopic particles immersed in a low-viscosity solvent such as water. Finally, the simulations reveal two distinct routes for splash formation: a particle can be ejected by a single high momentum-change collision. More surprisingly, a succession of small momentum-change collisions can accumulate to eject a particle outwards. Supported by NSF through its MRSEC program (DMR-0820054) and fluid dynamics program (CBET-1336489).

  7. Dense Axion Stars

    CERN Document Server

    Braaten, Eric; Zhang, Hong

    2015-01-01

    If the dark matter consists of axions, gravity can cause them to coalesce into axion stars, which are stable gravitationally bound Bose-Einstein condensates of axions. In the previously known axion stars, gravity and the attractive force between pairs of axions are balanced by the kinetic pressure.If the axion mass energy is $mc^2= 10^{-4}$ eV, these dilute axion stars have a maximum mass of about $10^{-14} M_\\odot$. We point out that there are also dense axion stars in which gravity is balanced by the mean-field pressure of the axion condensate. We study axion stars using the leading term in a systematically improvable approximation to the effective potential of the nonrelativistic effective field theory for axions. Using the Thomas-Fermi approximation in which the kinetic pressure is neglected, we find a sequence of new branches of axion stars in which gravity is balanced by the mean-field interaction energy of the axion condensate. If $mc^2 = 10^{-4}$ eV, the first branch of these dense axion stars has mas...

  8. Dense Axion Stars

    Science.gov (United States)

    Braaten, Eric; Mohapatra, Abhishek; Zhang, Hong

    2016-09-01

    If the dark matter particles are axions, gravity can cause them to coalesce into axion stars, which are stable gravitationally bound systems of axions. In the previously known solutions for axion stars, gravity and the attractive force between pairs of axions are balanced by the kinetic pressure. The mass of these dilute axion stars cannot exceed a critical mass, which is about 10-14M⊙ if the axion mass is 10-4 eV . We study axion stars using a simple approximation to the effective potential of the nonrelativistic effective field theory for axions. We find a new branch of dense axion stars in which gravity is balanced by the mean-field pressure of the axion Bose-Einstein condensate. The mass on this branch ranges from about 10-20M⊙ to about M⊙ . If a dilute axion star with the critical mass accretes additional axions and collapses, it could produce a bosenova, leaving a dense axion star as the remnant.

  9. Dense Axion Stars

    Science.gov (United States)

    Mohapatra, Abhishek; Braaten, Eric; Zhang, Hong

    2016-03-01

    If the dark matter consists of axions, gravity can cause them to coalesce into axion stars, which are stable gravitationally bound Bose-Einstein condensates of axions. In the previously known axion stars, gravity and the attractive force between pairs of axions are balanced by the kinetic pressure. If the axion mass energy is mc2 =10-4 eV, these dilute axion stars have a maximum mass of about 10-14M⊙ . We point out that there are also dense axion stars in which gravity is balanced by the mean-field pressure of the axion condensate. We study axion stars using the leading term in a systematically improvable approximation to the effective potential of the nonrelativistic effective field theory for axions. Using the Thomas-Fermi approximation in which the kinetic pressure is neglected, we find a sequence of new branches of axion stars in which gravity is balanced by the mean-field interaction energy of the axion condensate. If mc2 =10-4 4 eV, the first branch of these dense axion stars has mass ranging from about 10-11M⊙ toabout M⊙.

  10. Injection of photoelectrons into dense argon gas

    CERN Document Server

    Borghesani, A F

    2010-01-01

    The injection of photoelectrons in a gaseous or liquid sample is a widespread technique to produce a cold plasma in a weakly--ionized system in order to study the transport properties of electrons in a dense gas or liquid. We report here the experimental results of photoelectron injection into dense argon gas at the temperatureT=142.6 K as a function of the externally applied electric field and gas density. We show that the experimental data can be interpreted in terms of the so called Young-Bradbury model only if multiple scattering effects due to the dense environment are taken into account when computing the scattering properties and the energetics of the electrons.

  11. Hyperons in dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Dapo, Haris

    2009-01-28

    The hyperon-nucleon YN low momentum effective interaction (V{sub low} {sub k}) allows for an extensive study of the behavior of hyperons in dense matter, together with an investigation of effects of the presence of hyperons on dense matter. The first step towards this goal is the construction of the matrix elements for the hyperon-nucleon low momentum potential. In order to assess the different properties of hyperons within these potentials we calculate the hyperon single-particle potentials in the Hartree-Fock approximation for all of the interactions. Their dependence on both momentum and density, is studied. The single-particle potentials are then used to determine the chemical potential of hyperons in neutron stars. For nucleonic properties, the nucleon-nucleon V{sub low} {sub k} can be used with the caveat that the calculation of the ground-state energy of symmetric nuclear matter does not correctly reproduce the properties of matter at saturation. With the nucleon-nucleon V{sub low} {sub k} one is unable to reach the densities needed for the calculation of neutron star masses. To circumvent this problem we use two approaches: in the first one, we parametrize the entire nucleonic sector. In the second one, we replace only the three-body force. The former will enable us to study neutron star masses, and the latter for studying the medium's response to the external probe. In this thesis we take the external probe to be the neutrino. By combining this parametrization with the YN V{sub low} {sub k} potential, we calculate the equation of state of equilibrated matter. Performing the calculation in the Hartree-Fock approximation at zero temperature, the concentrations of all particles are calculated. From these we can ascertain at which densities hyperons appear for a wide range of parameters. Finally, we calculate the masses of neutron stars with these concentrations. For the calculation of the medium's response to an external probe, we replace the three

  12. A cross-taxon analysis of insect-associated bacterial diversity.

    Science.gov (United States)

    Jones, Ryan Thomas; Sanchez, Leticia Gonzales; Fierer, Noah

    2013-01-01

    Although it is well known that plants and animals harbor microbial symbionts that can influence host traits, the factors regulating the structure of these microbial communities often remain largely undetermined. This is particularly true for insect-associated microbial communities, as few cross-taxon comparisons have been conducted to date. To address this knowledge gap and determine how host phylogeny and ecology affect insect-associated microbial communities, we collected 137 insect specimens representing 39 species, 28 families, and 8 orders, and characterized the bacterial communities associated with each specimen via 16S rRNA gene sequencing. Bacterial taxa within the phylum Proteobacteria were dominant in nearly all insects sampled. On average, the insect-associated bacterial communities were not very diverse, with individuals typically harboring fewer than 8 bacterial phylotypes. Bacterial communities also tended to be dominated by a single phylotype; on average, the most abundant phylotype represented 54.7% of community membership. Bacterial communities were significantly more similar among closely related insects than among less-related insects, a pattern driven by within-species community similarity but detected at every level of insect taxonomy tested. Diet was a poor predictor of bacterial community composition. Individual insect species harbored remarkably unique communities: the distribution of 69.0% of bacterial phylotypes was limited to unique insect species, whereas only 5.7% of phylotypes were detected in more than five insect species. Together these results suggest that host characteristics strongly regulate the colonization and assembly of bacterial communities across insect lineages, patterns that are driven either by co-evolution between insects and their symbionts or by closely related insects sharing conserved traits that directly select for similar bacterial communities.

  13. A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity

    Science.gov (United States)

    Jones, Ryan Thomas; Sanchez, Leticia Gonzales; Fierer, Noah

    2013-01-01

    Although it is well known that plants and animals harbor microbial symbionts that can influence host traits, the factors regulating the structure of these microbial communities often remain largely undetermined. This is particularly true for insect-associated microbial communities, as few cross-taxon comparisons have been conducted to date. To address this knowledge gap and determine how host phylogeny and ecology affect insect-associated microbial communities, we collected 137 insect specimens representing 39 species, 28 families, and 8 orders, and characterized the bacterial communities associated with each specimen via 16S rRNA gene sequencing. Bacterial taxa within the phylum Proteobacteria were dominant in nearly all insects sampled. On average, the insect-associated bacterial communities were not very diverse, with individuals typically harboring fewer than 8 bacterial phylotypes. Bacterial communities also tended to be dominated by a single phylotype; on average, the most abundant phylotype represented 54.7% of community membership. Bacterial communities were significantly more similar among closely related insects than among less-related insects, a pattern driven by within-species community similarity but detected at every level of insect taxonomy tested. Diet was a poor predictor of bacterial community composition. Individual insect species harbored remarkably unique communities: the distribution of 69.0% of bacterial phylotypes was limited to unique insect species, whereas only 5.7% of phylotypes were detected in more than five insect species. Together these results suggest that host characteristics strongly regulate the colonization and assembly of bacterial communities across insect lineages, patterns that are driven either by co-evolution between insects and their symbionts or by closely related insects sharing conserved traits that directly select for similar bacterial communities. PMID:23613815

  14. Methods of Analysis by the U.S. Geological Survey National Water Quality Laboratory - Processing, Taxonomy, and Quality Control of Benthic Macroinvertebrate Samples

    Science.gov (United States)

    2000-01-01

    Only a portion of colonial organisms, such as Bryozoa or Porifera , is sorted to document its presence in the sample. Verte- brates, exuviae...Standard Taxonomic Assessment Taxon Level of identification Taxon Level of identification Porifera Family Corduliidae Genus/Species Cnidaria Family...individual taxonomists. The Taxon Level of identification Porifera Family Cnidaria Family Platyhelminthes Class Nematoda Phylum Nemertea Genus

  15. Conductive dense hydrogen

    Science.gov (United States)

    Eremets, M.; Troyan, I.

    2012-12-01

    Hydrogen at ambient pressures and low temperatures forms a molecular crystal which is expected to display metallic properties under megabar pressures. This metal is predicted to be superconducting with a very high critical temperature Tc of 200-400 K. The superconductor may potentially be recovered metastably at ambient pressures, and it may acquire a new quantum state as a metallic superfluid and a superconducting superfluid. Recent experiments performed at low temperatures T 220 GPa, new Raman modes arose, providing evidence for the transformation to a new opaque and electrically conductive phase IV. Above 260 GPa, in the next phase V, hydrogen reflected light well. Its resistance was nearly temperature-independent over a wide temperature range, down to 30 K, indicating that the hydrogen was metallic. Releasing the pressure induced the metallic phase to transform directly into molecular hydrogen with significant hysteresis at 200 GPa and 295 K. These data were published in our paper: M. I. Eremets and I. A. Troyan "Conductive dense hydrogen." Nature Materials 10: 927-931. We will present also new results on hydrogen: phase diagram with phases IV and V determined in P,T domain up to 300 GPa and 350 K. We will also discuss possible structures of phase IV based on our Raman and infrared measurements up to 300 GPa.

  16. Dense Hypervelocity Plasma Jets

    Science.gov (United States)

    Case, Andrew; Witherspoon, F. Douglas; Messer, Sarah; Bomgardner, Richard; Phillips, Michael; van Doren, David; Elton, Raymond; Uzun-Kaymak, Ilker

    2007-11-01

    We are developing high velocity dense plasma jets for fusion and HEDP applications. Traditional coaxial plasma accelerators suffer from the blow-by instability which limits the mass accelerated to high velocity. In the current design blow-by is delayed by a combination of electrode shaping and use of a tailored plasma armature created by injection of a high density plasma at a few eV generated by arrays of capillary discharges or sparkgaps. Experimental data will be presented for a complete 32 injector gun system built for driving rotation in the Maryland MCX experiment, including data on penetration of the plasma jet through a magnetic field. We present spectroscopic measurements of plasma velocity, temperature, and density, as well as total momentum measured using a ballistic pendulum. Measurements are in agreement with each other and with time of flight data from photodiodes and a multichannel PMT. Plasma density is above 10^15 cm-3, velocities range up to about 100 km/s. Preliminary results from a quadrature heterodyne HeNe interferometer are consistent with these results.

  17. Psychopathy as a Taxon: Evidence That Psychopaths Are a Discrete Class.

    Science.gov (United States)

    Harris, Grant T.; And Others

    1994-01-01

    Applied taxometric analyses to construct of psychopathy (as measured by Psychopathy Checklist) and to several variables reflecting antisocial childhood, adult criminality, and criminal recidivism. Findings from 653 serious offenders assessed or treated in maximum-security institution supported existence of taxon underlying psychopathy. Childhood…

  18. Taxon-specific PCR primers to detect two inconspicuous arbuscular mycorrhizal fungi from temperate agricultural grassland

    NARCIS (Netherlands)

    Gamper, H.A.; Leuchtmann, A.

    2007-01-01

    Taxon-specific polymerase chain reaction (PCR) primers enable detection of arbuscular mycorrhizal fungi (AMF, Glomeromycota) in plant roots where the fungi lack discriminative morphological and biochemical characters. We designed and validated pairs of new PCR primers targeted to the flanking

  19. Heavy mesons in dense matter

    NARCIS (Netherlands)

    Tolos, Laura; Gamermann, Daniel; Garcia-Recio, Carmen; Molina, Raquel; Nieves, Juan; Oset, Eulogio; Ramos, Angels; LlanesEstrada, FJ; Pelaez,

    2011-01-01

    Charmed mesons in dense matter are studied within a unitary coupled-channel approach which takes into account Pauli-blocking effects and meson self-energies in a self-consistent manner. We obtain the open-charm meson spectral functions in this dense medium, and discuss their implications on hidden c

  20. The influence of spatial grain size on the suitability of the higher-taxon approach in continental priority-setting

    DEFF Research Database (Denmark)

    Larsen, Frank Wugt; Rahbek, Carsten

    2005-01-01

    The higher-taxon approach may provide a pragmatic surrogate for the rapid identification of priority areas for conservation. To date, no continent-wide study has examined the use of higher-taxon data to identify complementarity-based networks of priority areas, nor has the influence of spatial gr...

  1. Densely crosslinked polycarbosiloxanes .1. Synthesis

    NARCIS (Netherlands)

    Flipsen, T.A C; Derks, R.; van der Vegt, H.A.; Pennings, A.J; Hadziioannou, G

    1997-01-01

    Novel densely crosslinked polycarbosiloxanes were obtained by using functional branched prepolymers. Two types of soluble prepolymers were prepared from di- and trifunctional alkoxysilane monomers via cohydrolysis/condensation and for both final crosslinking occurred via hydrosilylation. The prepoly

  2. Sobre la validez taxonómica de Epithemia Zebra var. Elongata (Epithemiaceae, Bacillariophyceae

    Directory of Open Access Journals (Sweden)

    Gabriela Gorritti

    2000-01-01

    Full Text Available Gorritti, G., Sala, S. E. & Guerrero, J. M. 2000. Sobre la validez taxonómica de Epithemiazebra var. elongata (Epithemiaceae, Bacillariophyceae. Darwiniana 38(3-4: 285-289.Se revisaron materiales de Epithemia zebra var. elongata Grunow ex Frenguelli para establecer lavalidez de este taxón. Se estudiaron con microscopio óptico y electrónico de barrido, ejemplares de lacolección Frenguelli y otros recientemente coleccionados en Tierra del Fuego . El análisis de la variaciónpoblacional de los caracteres morfológicos y morfométricos, y la comparación con los taxones afines:Epithemia adnata (Kützing Brébisson y E. adnata var. minor (Peragallo & Héribaud Patrick, demostróque no existen diferencias entre ellos por lo que E. zebra var. elongata debe ser considerada sinónimo deE. adnata

  3. Heliotropium thermophilum (Boraginaceae), a new taxon from SW Anatolia, Turkey

    DEFF Research Database (Denmark)

    Tan, Kit; Celik, Ali; Gemici, Yusuf

    2008-01-01

    of its unusual habitat, which is a geothermal area with ground temperatures of 55-65 °C. Affinities clearly lie with the annual H. hirsutissimum Grauer, which is distributed in N Africa, the East Mediterranean area, and SW Asia; the latter, however, is hexaploid (2n = 48) and never occurs in thermal...... habitats. Micromorphological, ecological, and ecophysiological data for the new taxon are provided. Ecological isolation has allowed the evolution and differentiation of a new and distinct species....

  4. Phylogenetic autocorrelation and evolutionary interpretation of the higher-taxon approach for biodiversity analyses

    Directory of Open Access Journals (Sweden)

    J. A. F. Diniz-Filho

    Full Text Available Although in most recent broad-scale analyses, diversity is measured by counting the number of species in a given area or spatial unity (species richness, a `top-down' approach has been used sometimes, counting higher-taxon (genera, family instead of species with some advantages. However, this higher-taxon approach is quite empirical and the cut-off level is usually arbitrarily defined. In this work, we show that the higher-taxon approach could be theoretically linked with models of phenotypic diversification by means of phylogenetic autocorrelation analysis in such a way that the taxonomic (or phylogenetic rank to be used could not be necessarily arbitrary. This rank expresses past time in which taxa became independent for a given phenotypic trait or for the evolution of average phenotypes across different traits. We illustrated the approach by evaluating phylogenetic patches for 23 morphological, ecological and behavioural characters in New World terrestrial Carnivora. The higher-taxon counts at 18.8 mya (S L defined by phylogenetic correlograms are highly correlated with species richness (r = 0.899; P < 0.001 with ca. 13 degrees of freedom by taking spatial autocorrelation into account. However, S L in North America is usually larger than in South America. Thus, although there are more species in South and Central America, the fast recent diversification that occurred in this region generated species that are "redundant" in relation to lineages that were present at 18.8 my. BP. Therefore, the number of lineages can be comparatively used as a measure of evolutionary diversity under a given model of phenotypic divergence among lower taxonomic units.

  5. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

    Directory of Open Access Journals (Sweden)

    Hilu Khidir W

    2009-03-01

    Full Text Available Abstract Background Phylogenetic analyses of angiosperm relationships have used only a small percentage of available sequence data, but phylogenetic data matrices often can be augmented with existing data, especially if one allows missing characters. We explore the effects on phylogenetic analyses of adding 378 matK sequences and 240 26S rDNA sequences to the complete 3-gene, 567-taxon angiosperm phylogenetic matrix of Soltis et al. Results We performed maximum likelihood bootstrap analyses of the complete, 3-gene 567-taxon data matrix and the incomplete, 5-gene 567-taxon data matrix. Although the 5-gene matrix has more missing data (27.5% than the 3-gene data matrix (2.9%, the 5-gene analysis resulted in higher levels of bootstrap support. Within the 567-taxon tree, the increase in support is most evident for relationships among the 170 taxa for which both matK and 26S rDNA sequences were added, and there is little gain in support for relationships among the 119 taxa having neither matK nor 26S rDNA sequences. The 5-gene analysis also places the enigmatic Hydrostachys in Lamiales (BS = 97% rather than in Cornales (BS = 100% in 3-gene analysis. The placement of Hydrostachys in Lamiales is unprecedented in molecular analyses, but it is consistent with embryological and morphological data. Conclusion Adding available, and often incomplete, sets of sequences to existing data sets can be a fast and inexpensive way to increase support for phylogenetic relationships and produce novel and credible new phylogenetic hypotheses.

  6. Incorrect sequencing and taxon misidentification: an example in the Trichinella genus.

    Science.gov (United States)

    Marucci, G; La Rosa, G; Pozio, E

    2010-09-01

    Molecular analyses such as polymerase chain reaction (PCR) and sequencing are very useful for taxon identification, especially when morphological characters useful for identifying taxa are lacking. However, the use of molecular tools can be the source of taxon misidentification if they are not correctly applied and the results are not critically evaluated and compared with the literature and GenBank data. We describe a case of misidentification of a taxon of the genus Trichinella due to sequencing mistakes, lack of reference material and selection of a single molecular marker. A Trichinella sp. isolate from an Iranian wild boar (Sus scrofa) was identified as belonging to the Nearctic species Trichinella murrelli, through the molecular analysis of the 5S rRNA intergenic spacer region. A successive molecular identification of the same isolate was performed by the International Trichinella Reference Centre in Rome, Italy, using the 5S rRNA intergenic spacer region, the LSU rDNA expansion segment five, and the internal transcribed spacers 1 and 2. According to these analyses, the Iranian isolate belonged to Trichinella britovi, a Palaearctic species already described in Iran.

  7. Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development

    Directory of Open Access Journals (Sweden)

    Mungall Christopher J

    2010-10-01

    Full Text Available Abstract Background The Gene Ontology project supports categorization of gene products according to their location of action, the molecular functions that they carry out, and the processes that they are involved in. Although the ontologies are intentionally developed to be taxon neutral, and to cover all species, there are inherent taxon specificities in some branches. For example, the process 'lactation' is specific to mammals and the location 'mitochondrion' is specific to eukaryotes. The lack of an explicit formalization of these constraints can lead to errors and inconsistencies in automated and manual annotation. Results We have formalized the taxonomic constraints implicit in some GO classes, and specified these at various levels in the ontology. We have also developed an inference system that can be used to check for violations of these constraints in annotations. Using the constraints in conjunction with the inference system, we have detected and removed errors in annotations and improved the structure of the ontology. Conclusions Detection of inconsistencies in taxon-specificity enables gradual improvement of the ontologies, the annotations, and the formalized constraints. This is progressively improving the quality of our data. The full system is available for download, and new constraints or proposed changes to constraints can be submitted online at https://sourceforge.net/tracker/?atid=605890&group_id=36855.

  8. Taxon combinations, parsimony analysis (PAUP*), and the taxonomy of the yellow-tailed woolly monkey, Lagothrix flavicauda.

    Science.gov (United States)

    Matthews, Luke J; Rosenberger, Alfred L

    2008-11-01

    The classifications of primates, in general, and platyrrhine primates, in particular, have been greatly revised subsequent to the rationale for taxonomic decisions shifting from one rooted in the biological species concept to one rooted solely in phylogenetic affiliations. Given the phylogenetic justification provided for revised taxonomies, the scientific validity of taxonomic distinctions can be rightly judged by the robusticity of the phylogenetic results supporting them. In this study, we empirically investigated taxonomic-sampling effects on a cladogram previously inferred from craniodental data for the woolly monkeys (Lagothrix). We conducted the study primarily through much greater sampling of species-level taxa (OTUs) after improving some character codings and under a variety of outgroup choices. The results indicate that alternative selections of species subsets from within genera produce various tree topologies. These results stand even after adjusting the character set and considering the potential role of interobserver disagreement. We conclude that specific taxon combinations, in this case, generic or species pairings, of the primary study group has a biasing effect in parsimony analysis, and that the cladistic rationale for resurrecting the Oreonax generic distinction for the yellow-tailed woolly monkey (Lagothrix flavicauda) is based on an artifact of idiosyncratic sampling within the study group below the genus level. Some recommendations to minimize the problem, which is prevalent in all cladistic analyses, are proposed.

  9. Numerical modeling for dilute and dense sprays

    Science.gov (United States)

    Chen, C. P.; Kim, Y. M.; Shang, H. M.; Ziebarth, J. P.; Wang, T. S.

    1992-01-01

    We have successfully implemented a numerical model for spray-combustion calculations. In this model, the governing gas-phase equations in Eulerian coordinate are solved by a time-marching multiple pressure correction procedure based on the operator-splitting technique. The droplet-phase equations in Lagrangian coordinate are solved by a stochastic discrete particle technique. In order to simplify the calculation procedure for the circulating droplets, the effective conductivity model is utilized. The k-epsilon models are utilized to characterize the time and length scales of the gas phase in conjunction with turbulent modulation by droplets and droplet dispersion by turbulence. This method entails random sampling of instantaneous gas flow properties and the stochastic process requires a large number of computational parcels to produce the satisfactory dispersion distributions even for rather dilute sprays. Two major improvements in spray combustion modelings were made. Firstly, we have developed a probability density function approach in multidimensional space to represent a specific computational particle. Secondly, we incorporate the Taylor Analogy Breakup (TAB) model for handling the dense spray effects. This breakup model is based on the reasonable assumption that atomization and drop breakup are indistinguishable processes within a dense spray near the nozzle exit. Accordingly, atomization is prescribed by injecting drops which have a characteristic size equal to the nozzle exit diameter. Example problems include the nearly homogeneous and inhomogeneous turbulent particle dispersion, and the non-evaporating, evaporating, and burning dense sprays. Comparison with experimental data will be discussed in detail.

  10. Conductive dense hydrogen.

    Science.gov (United States)

    Eremets, M I; Troyan, I A

    2011-11-13

    Molecular hydrogen is expected to exhibit metallic properties under megabar pressures. This metal is predicted to be superconducting with a very high critical temperature, T(c), of 200-400 K, and it may acquire a new quantum state as a metallic superfluid and a superconducting superfluid. It may potentially be recovered metastably at ambient pressures. However, experiments carried out at low temperatures, Thydrogen remains in the molecular insulating state. Here we report on the transformation of normal molecular hydrogen at room temperature (295 K) to a conductive and metallic state. At 200 GPa the Raman frequency of the molecular vibron strongly decreased and the spectral width increased, evidencing a strong interaction between molecules. Deuterium behaved similarly. Above 220 GPa, hydrogen became opaque and electrically conductive. At 260-270 GPa, hydrogen transformed into a metal as the conductance of hydrogen sharply increased and changed little on further pressurizing up to 300 GPa or cooling to at least 30 K; and the sample reflected light well. The metallic phase transformed back at 295 K into molecular hydrogen at 200 GPa. This significant hysteresis indicates that the transformation of molecular hydrogen into a metal is accompanied by a first-order structural transition presumably into a monatomic liquid state. Our findings open an avenue for detailed and comprehensive studies of metallic hydrogen.

  11. Family-Level Sampling of Mitochondrial Genomes in Coleoptera: Compositional Heterogeneity and Phylogenetics.

    Science.gov (United States)

    Timmermans, Martijn J T N; Barton, Christopher; Haran, Julien; Ahrens, Dirk; Culverwell, C Lorna; Ollikainen, Alison; Dodsworth, Steven; Foster, Peter G; Bocak, Ladislav; Vogler, Alfried P

    2015-12-08

    Mitochondrial genomes are readily sequenced with recent technology and thus evolutionary lineages can be densely sampled. This permits better phylogenetic estimates and assessment of potential biases resulting from heterogeneity in nucleotide composition and rate of change. We gathered 245 mitochondrial sequences for the Coleoptera representing all 4 suborders, 15 superfamilies of Polyphaga, and altogether 97 families, including 159 newly sequenced full or partial mitogenomes. Compositional heterogeneity greatly affected 3rd codon positions, and to a lesser extent the 1st and 2nd positions, even after RY coding. Heterogeneity also affected the encoded protein sequence, in particular in the nad2, nad4, nad5, and nad6 genes. Credible tree topologies were obtained with the nhPhyML ("nonhomogeneous") algorithm implementing a model for branch-specific equilibrium frequencies. Likelihood searches using RAxML were improved by data partitioning by gene and codon position. Finally, the PhyloBayes software, which allows different substitution processes for amino acid replacement at various sites, produced a tree that best matched known higher level taxa and defined basal relationships in Coleoptera. After rooting with Neuropterida outgroups, suborder relationships were resolved as (Polyphaga (Myxophaga (Archostemata + Adephaga))). The infraorder relationships in Polyphaga were (Scirtiformia (Elateriformia ((Staphyliniformia + Scarabaeiformia) (Bostrichiformia (Cucujiformia))))). Polyphagan superfamilies were recovered as monophyla except Staphylinoidea (paraphyletic for Scarabaeiformia) and Cucujoidea, which can no longer be considered a valid taxon. The study shows that, although compositional heterogeneity is not universal, it cannot be eliminated for some mitochondrial genes, but dense taxon sampling and the use of appropriate Bayesian analyses can still produce robust phylogenetic trees.

  12. Constructing dense genetic linkage maps

    NARCIS (Netherlands)

    Jansen, J.; Jong, de A.G.; Ooijen, van J.W.

    2001-01-01

    This paper describes a novel combination of techniques for the construction of dense genetic linkage maps. The construction of such maps is hampered by the occurrence of even small proportions of typing errors. Simulated annealing is used to obtain the best map according to the optimality criterion:

  13. Method for dense packing discovery.

    Science.gov (United States)

    Kallus, Yoav; Elser, Veit; Gravel, Simon

    2010-11-01

    The problem of packing a system of particles as densely as possible is foundational in the field of discrete geometry and is a powerful model in the material and biological sciences. As packing problems retreat from the reach of solution by analytic constructions, the importance of an efficient numerical method for conducting de novo (from-scratch) searches for dense packings becomes crucial. In this paper, we use the divide and concur framework to develop a general search method for the solution of periodic constraint problems, and we apply it to the discovery of dense periodic packings. An important feature of the method is the integration of the unit-cell parameters with the other packing variables in the definition of the configuration space. The method we present led to previously reported improvements in the densest-known tetrahedron packing. Here, we use the method to reproduce the densest-known lattice sphere packings and the best-known lattice kissing arrangements in up to 14 and 11 dimensions, respectively, providing numerical evidence for their optimality. For nonspherical particles, we report a dense packing of regular four-dimensional simplices with density ϕ=128/219≈0.5845 and with a similar structure to the densest-known tetrahedron packing.

  14. Unconditional Continuous Variable Dense Coding

    CERN Document Server

    Ralph, T C

    2002-01-01

    We investigate the conditions under which unconditional dense coding can be achieved using continuous variable entanglement. We consider the effect of entanglement impurity and detector efficiency and discuss experimental verification. We conclude that the requirements for a strong demonstration are not as stringent as previously thought and are within the reach of present technology.

  15. Rediscovery of Jasminum parkeri Dunn, an endemic and endangered taxon from the western Himalaya, India

    Directory of Open Access Journals (Sweden)

    Lal Brij

    2014-06-01

    Full Text Available The present article deals with the rediscovery of Jasminum parkeri Dunn (Oleaceae collected from its type locality after a lapse of about 100 years. J. parkeri is a highly endangered and narrowly endemic taxon restricted to a small pocket in the remote mountain area of Chamba district, Himachal Pradesh in the western Himalaya, India. In order to facilitate identification of this species, the plant description along with a brief history of its discovery, affinity with the other taxa of Jasminum, ecological notes, and pictures are provided. Subsequently, possibility of cultivation of this species in ex-situ conditions is also discussed.

  16. Sobre la validez taxonómica de Epithemia Zebra var. Elongata (Epithemiaceae, Bacillariophyceae)

    OpenAIRE

    Gabriela Gorritti; Sala, Silvia E.; José M. Guerrero

    2000-01-01

    Gorritti, G., Sala, S. E. & Guerrero, J. M. 2000. Sobre la validez taxonómica de Epithemiazebra var. elongata (Epithemiaceae, Bacillariophyceae). Darwiniana 38(3-4): 285-289.Se revisaron materiales de Epithemia zebra var. elongata Grunow ex Frenguelli para establecer lavalidez de este taxón. Se estudiaron con microscopio óptico y electrónico de barrido, ejemplares de lacolección Frenguelli y otros recientemente coleccionados en Tierra del Fuego . El análisis de la variaciónpoblacional de los...

  17. Warm Dense Matter: An Overview

    Energy Technology Data Exchange (ETDEWEB)

    Kalantar, D H; Lee, R W; Molitoris, J D

    2004-04-21

    This document provides a summary of the ''LLNL Workshop on Extreme States of Materials: Warm Dense Matter to NIF'' which was held on 20, 21, and 22 February 2002 at the Wente Conference Center in Livermore, CA. The warm dense matter regime, the transitional phase space region between cold material and hot plasma, is presently poorly understood. The drive to understand the nature of matter in this regime is sparking scientific activity worldwide. In addition to pure scientific interest, finite temperature dense matter occurs in the regimes of interest to the SSMP (Stockpile Stewardship Materials Program). So that obtaining a better understanding of WDM is important to performing effective experiments at, e.g., NIF, a primary mission of LLNL. At this workshop we examined current experimental and theoretical work performed at, and in conjunction with, LLNL to focus future activities and define our role in this rapidly emerging research area. On the experimental front LLNL plays a leading role in three of the five relevant areas and has the opportunity to become a major player in the other two. Discussion at the workshop indicated that the path forward for the experimental efforts at LLNL were two fold: First, we are doing reasonable baseline work at SPLs, HE, and High Energy Lasers with more effort encouraged. Second, we need to plan effectively for the next evolution in large scale facilities, both laser (NIF) and Light/Beam sources (LCLS/TESLA and GSI) Theoretically, LLNL has major research advantages in areas as diverse as the thermochemical approach to warm dense matter equations of state to first principles molecular dynamics simulations. However, it was clear that there is much work to be done theoretically to understand warm dense matter. Further, there is a need for a close collaboration between the generation of verifiable experimental data that can provide benchmarks of both the experimental techniques and the theoretical capabilities

  18. A higher-taxon approach to rodent conservation priorities for the 21st century

    Directory of Open Access Journals (Sweden)

    Amori, G.

    2003-12-01

    Full Text Available Although rodents are not considered among the most threatened mammals, there is ample historical evidence concerning the vulnerability to extinction of several rodent phylogenetic lineages. Owing to the high number of species, poor taxonomy and the lack of detailed information on population status, the assessment of threat status according to IUCN criteria has still to be considered arbitrary in some cases. Public appreciation is scarce and tends to overlook the ecological role and conservation problems of an order representing about 41 percent of mammalian species. We provide an overview of the most relevant information concerning the conservation status of rodents at the genus, subfamily, and family level. For species¿poor taxa, the importance of distinct populations is highlighted and a splitter approach in taxonomy is adopted. Considering present constraints, strategies for the conservation of rodent diversity must rely mainly on higher taxon and hot-spot approaches. A clear understanding of phyletic relationships among difficult groups -such as Rattus, for instance- is an urgent goal. Even if rodent taxonomy is still unstable, high taxon approach is amply justified from a conservation standpoint as it offers a more subtle overview of the world terrestrial biodiversity than that offered by large mammals. Of the circa 451 living rodent genera, 126 (27,9 %, representing 168 living species, deserve conservation attention according to the present study. About 76 % of genera at risk are monotypic, confirming the danger of losing a considerable amount of phylogenetic distinctiveness.

  19. Rediscovery and reclassification of the dipteran taxon Nothomicrodon Wheeler, an exclusive endoparasitoid of gyne ant larvae

    Science.gov (United States)

    Pérez-Lachaud, Gabriela; Jahyny, Benoit J. B.; Ståhls, Gunilla; Rotheray, Graham; Delabie, Jacques H. C.; Lachaud, Jean-Paul

    2017-01-01

    The myrmecophile larva of the dipteran taxon Nothomicrodon Wheeler is rediscovered, almost a century after its original description and unique report. The systematic position of this dipteran has remained enigmatic due to the absence of reared imagos to confirm indentity. We also failed to rear imagos, but we scrutinized entire nests of the Brazilian arboreal dolichoderine ant Azteca chartifex which, combined with morphological and molecular studies, enabled us to establish beyond doubt that Nothomicrodon belongs to the Phoridae (Insecta: Diptera), not the Syrphidae where it was first placed, and that the species we studied is an endoparasitoid of the larvae of A. chartifex, exclusively attacking sexual female (gyne) larvae. Northomicrodon parasitism can exert high fitness costs to a host colony. Our discovery adds one more case to the growing number of phorid taxa known to parasitize ant larvae and suggests that many others remain to be discovered. Our findings and literature review confirm that the Phoridae is the only taxon known that parasitizes both adults and the immature stages of different castes of ants, thus threatening ants on all fronts. PMID:28361946

  20. Automatic classification of a taxon-rich community recorded in the wild.

    Science.gov (United States)

    Potamitis, Ilyas

    2014-01-01

    There is a rich literature on automatic species identification of a specific target taxon as regards various vocalizing animals. Research usually is restricted to specific species--in most cases a single one. It is only very recently that the number of monitored species has started to increase for certain habitats involving birds. Automatic acoustic monitoring has not yet been proven to be generic enough to scale to other taxa and habitats than the ones described in the original research. Although attracting much attention, the acoustic monitoring procedure is neither well established yet nor universally adopted as a biodiversity monitoring tool. Recently, the multi-instance multi-label framework on bird vocalizations has been introduced to face the obstacle of simultaneously vocalizing birds of different species. We build on this framework to integrate novel, image-based heterogeneous features designed to capture different aspects of the spectrum. We applied our approach to a taxon-rich habitat that included 78 birds, 8 insect species and 1 amphibian. This dataset constituted the Multi-label Bird Species Classification Challenge-NIPS 2013 where the proposed approach achieved an average accuracy of 91.25% on unseen data.

  1. Delineating species with DNA barcodes: a case of taxon dependent method performance in moths.

    Directory of Open Access Journals (Sweden)

    Mari Kekkonen

    Full Text Available The accelerating loss of biodiversity has created a need for more effective ways to discover species. Novel algorithmic approaches for analyzing sequence data combined with rapidly expanding DNA barcode libraries provide a potential solution. While several analytical methods are available for the delineation of operational taxonomic units (OTUs, few studies have compared their performance. This study compares the performance of one morphology-based and four DNA-based (BIN, parsimony networks, ABGD, GMYC methods on two groups of gelechioid moths. It examines 92 species of Finnish Gelechiinae and 103 species of Australian Elachistinae which were delineated by traditional taxonomy. The results reveal a striking difference in performance between the two taxa with all four DNA-based methods. OTU counts in the Elachistinae showed a wider range and a relatively low (ca. 65% OTU match with reference species while OTU counts were more congruent and performance was higher (ca. 90% in the Gelechiinae. Performance rose when only monophyletic species were compared, but the taxon-dependence remained. None of the DNA-based methods produced a correct match with non-monophyletic species, but singletons were handled well. A simulated test of morphospecies-grouping performed very poorly in revealing taxon diversity in these small, dull-colored moths. Despite the strong performance of analyses based on DNA barcodes, species delineated using single-locus mtDNA data are best viewed as OTUs that require validation by subsequent integrative taxonomic work.

  2. 'Candidatus Phytoplasma malaysianum', a novel taxon associated with virescence and phyllody of Madagascar periwinkle (Catharanthus roseus).

    Science.gov (United States)

    Nejat, Naghmeh; Vadamalai, Ganesan; Davis, Robert E; Harrison, Nigel A; Sijam, Kamaruzaman; Dickinson, Matthew; Abdullah, Siti Nor Akmar; Zhao, Yan

    2013-02-01

    This study addressed the taxonomic position and group classification of a phytoplasma responsible for virescence and phyllody symptoms in naturally diseased Madagascar periwinkle plants in western Malaysia. Unique regions in the 16S rRNA gene from the Malaysian periwinkle virescence (MaPV) phytoplasma distinguished the phytoplasma from all previously described 'Candidatus Phytoplasma' species. Pairwise sequence similarity scores, calculated through alignment of full-length 16S rRNA gene sequences, revealed that the MaPV phytoplasma 16S rRNA gene shared 96.5 % or less sequence similarity with that of previously described 'Ca. Phytoplasma' species, justifying the recognition of the MaPV phytoplasma as a reference strain of a novel taxon, 'Candidatus Phytoplasma malaysianum'. The 16S rRNA gene F2nR2 fragment from the MaPV phytoplasma exhibited a distinct restriction fragment length polymorphism (RFLP) profile and the pattern similarity coefficient values were lower than 0.85 with representative phytoplasmas classified in any of the 31 previously delineated 16Sr groups; therefore, the MaPV phytoplasma was designated a member of a new 16Sr group, 16SrXXXII. Phytoplasmas affiliated with this novel taxon and the new group included diverse strains infecting periwinkle, coconut palm and oil palm in Malaysia. Three phytoplasmas were characterized as representatives of three distinct subgroups, 16SrXXXII-A, 16SrXXXII-B and 16SrXXXII-C, respectively.

  3. Structural Transitions in Dense Networks

    CERN Document Server

    Lambiotte, R; Bhat, U; Redner, S

    2016-01-01

    We introduce an evolving network model in which a new node attaches to a randomly selected target node and also to each of its neighbors with probability $p$. The resulting network is sparse for $p<\\frac{1}{2}$ and dense (average degree increasing with number of nodes $N$) for $p\\geq \\frac{1}{2}$. In the dense regime, individual networks realizations built by this copying mechanism are disparate and not self-averaging. Further, there is an infinite sequence of structural anomalies at $p=\\frac{2}{3}$, $\\frac{3}{4}$, $\\frac{4}{5}$, etc., where the dependences on $N$ of the number of triangles (3-cliques), 4-cliques, undergo phase transitions. When linking to second neighbors of the target can occur, the probability that the resulting graph is complete---where all nodes are connected---is non-zero as $N\\to\\infty$.

  4. Holographic Renormalization in Dense Medium

    Directory of Open Access Journals (Sweden)

    Chanyong Park

    2014-01-01

    describes a dense medium at finite temperature, is investigated in this paper. In a dense medium, two different thermodynamic descriptions are possible due to an additional conserved charge. These two different thermodynamic ensembles are classified by the asymptotic boundary condition of the bulk gauge field. It is also shown that in the holographic renormalization regularity of all bulk fields can reproduce consistent thermodynamic quantities and that the Bekenstein-Hawking entropy is nothing but the renormalized thermal entropy of the dual field theory. Furthermore, we find that the Reissner-Nordström AdS black brane is dual to a theory with conformal matter as expected, whereas a charged black brane with a nontrivial dilaton profile is mapped to a theory with nonconformal matter although its leading asymptotic geometry still remains as AdS space.

  5. Radiative properties of dense nanofluids.

    Science.gov (United States)

    Wei, Wei; Fedorov, Andrei G; Luo, Zhongyang; Ni, Mingjiang

    2012-09-01

    The radiative properties of dense nanofluids are investigated. For nanofluids, scattering and absorbing of electromagnetic waves by nanoparticles, as well as light absorption by the matrix/fluid in which the nanoparticles are suspended, should be considered. We compare five models for predicting apparent radiative properties of nanoparticulate media and evaluate their applicability. Using spectral absorption and scattering coefficients predicted by different models, we compute the apparent transmittance of a nanofluid layer, including multiple reflecting interfaces bounding the layer, and compare the model predictions with experimental results from the literature. Finally, we propose a new method to calculate the spectral radiative properties of dense nanofluids that shows quantitatively good agreement with the experimental results.

  6. Dilatons for Dense Hadronic Matter

    CERN Document Server

    Lee, Hyun Kyu

    2009-01-01

    The idea that the explicit breaking of scale invariance by the trace anomaly of QCD can be rephrased as a spontaneous breaking has been recently exploited to capture the low-energy strong interaction dynamics of dense (and also hot) matter in terms of two dilaton fields, the "soft" (chi_s) and the "hard" (chi_h) fields, in the frame work of the hidden local gauge symmetry. In the Freund-Nambu model, the spontaneous symmetry breaking of scale symmetry is induced by an explicitly breaking term, while the spontaneous symmetry breaking is possible in the flat potential model which is scale symmetric. We discuss the interplay of the soft and hard dilatons using the spontaneously broken scale symmetry schemes and uncover a novel structure of dense matter hitherto unexplored.

  7. X-ray scattering from dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    McSherry, D.J

    2000-09-01

    Dense plasmas were studied by probing them with kilovolt x-rays and measuring those scattered at various angles. The Laser-Produced x-ray source emitted Ti He alpha 4.75 keV x-rays. Two different plasma types were explored. The first was created by laser driven shocks on either side of a sample foil consisting of 2 micron Al layer, sandwiched between two 1 micron CH layers. We have observed a peak in the x-ray scattering cross section, indicating diffraction from the plasma. However, the experimentally inferred plasma density, broadly speaking, did not always agree with the hydrodynamic simulation MEDX (A modified version of MEDUSA). The second plasma type that we studied was created by soft x-ray heating on either side of a sample foil, this time consisting of 1 micron layer of Al, sandwiched between two 0.2 micron CH layers. Two foil targets, each consisting of a 0.1 micron thick Au foil mounted on 1 micron of CH, where placed 4 mm from the sample foil. The soft x-rays where produced by laser irradiating these two foil targets. We found that, 0.5 ns after the peak of the laser heating pulses, the measured cross sections more closely matched those simulated using the Thomas Fermi model than the Inferno model. Later in time, at 2 ns, the plasma is approaching a weakly coupled state. This is the first time x-ray scattering cross sections have been measured from dense plasmas generated by radiatively heating both sides of the sample. Moreover, these are absolute values typically within a factor of two of expectation for early x-ray probe times. (author)

  8. X-ray scattering from dense plasmas

    Science.gov (United States)

    McSherry, Declan Joseph

    Dense plasmas were studied by probing them with kilovolt x-rays and measuring those scattered at various angles. The laser produced x-ray source emitted Ti He alpha 4.75 keV x-rays. Two different plasma types were explored. The first was created by laser driven shocks on either side of a sample foil consisting of 2 micron thickness of Al, sandwiched between two 1 micron CH layers. We have observed a peak in the x-ray scattering cross section, indicating diffraction from the plasma. However, the experimentally inferred plasma density, did not always agree broadly with the hydrodynamic simulation MEDX (A modified version of MEDUSA). The second plasma type that we studied was created by soft x-ray heating on either side of a sample foil, this time consisting of 1 micron thickness of Al, sandwiched between two 0.2 micron CH layers. Two foil targets, each consisting of a 0.1 micron thick Au foil mounted on 1 micron of CH, were placed 4 mm from the sample foil. The soft x-rays were produced by laser irradiating these two foil targets. We found that, 0.5 ns after the peak of the laser heating pulses, that the measured cross sections more closely matched those simulated using the Thomas Fermi model than the Inferno model. Later in time, at 2 ns, the plasma is approaching a weakly coupled state. This is the first time x-ray scattering cross sections have been measured from dense plasmas generated by radiatively heating both sides of the sample. Moreover, these are absolute values typically within a factor of two of expectation for early x-ray probe times.

  9. Constructing Dense Graphs with Unique Hamiltonian Cycles

    Science.gov (United States)

    Lynch, Mark A. M.

    2012-01-01

    It is not difficult to construct dense graphs containing Hamiltonian cycles, but it is difficult to generate dense graphs that are guaranteed to contain a unique Hamiltonian cycle. This article presents an algorithm for generating arbitrarily large simple graphs containing "unique" Hamiltonian cycles. These graphs can be turned into dense graphs…

  10. Ion Beam Driven Warm Dense Matter Experiments

    Science.gov (United States)

    Bieniosek, F. M.; Henestroza, E.; Leitner, M. A.; Lidia, S. M.; Logan, B. G.; More, R. M.; Ni, P. A.; Seidl, P. A.; Waldron, W. L.; Barnard, J. J.

    2008-11-01

    We report plans and experimental results in ion beam-driven warm dense matter (WDM) experiments. Initial experiments use a 0.3 MeV K+ beam from the NDCX-I accelerator. The WDM conditions are to be achieved by longitudinal and transverse neutralized drift compression to provide a hot spot on the target with a 1-mm beam spot size, and 2-ns pulse length. As a technique for heating matter to high energy density, intense ion beams can deliver precise and uniform beam energy deposition, in a relatively large sample size, and can heat any solid-phase target material. The range of the beams in solid targets is less than 1 micron, which can be lengthened by using reduced density porous targets. We have developed a WDM target chamber and target diagnostics including a fast multi-channel optical pyrometer, optical streak camera, VISAR, and high-speed gated cameras. Initial experiments will explore measurement of temperature and other target parameters. Experiments are planned in areas such as dense electronegative targets, porous target homogenization and two-phase equation of state.

  11. An environmental bacterial taxon with a large and distinct metabolic repertoire.

    Science.gov (United States)

    Wilson, Micheal C; Mori, Tetsushi; Rückert, Christian; Uria, Agustinus R; Helf, Maximilian J; Takada, Kentaro; Gernert, Christine; Steffens, Ursula A E; Heycke, Nina; Schmitt, Susanne; Rinke, Christian; Helfrich, Eric J N; Brachmann, Alexander O; Gurgui, Cristian; Wakimoto, Toshiyuki; Kracht, Matthias; Crüsemann, Max; Hentschel, Ute; Abe, Ikuro; Matsunaga, Shigeki; Kalinowski, Jörn; Takeyama, Haruko; Piel, Jörn

    2014-02-06

    Cultivated bacteria such as actinomycetes are a highly useful source of biomedically important natural products. However, such 'talented' producers represent only a minute fraction of the entire, mostly uncultivated, prokaryotic diversity. The uncultured majority is generally perceived as a large, untapped resource of new drug candidates, but so far it is unknown whether taxa containing talented bacteria indeed exist. Here we report the single-cell- and metagenomics-based discovery of such producers. Two phylotypes of the candidate genus 'Entotheonella' with genomes of greater than 9 megabases and multiple, distinct biosynthetic gene clusters co-inhabit the chemically and microbially rich marine sponge Theonella swinhoei. Almost all bioactive polyketides and peptides known from this animal were attributed to a single phylotype. 'Entotheonella' spp. are widely distributed in sponges and belong to an environmental taxon proposed here as candidate phylum 'Tectomicrobia'. The pronounced bioactivities and chemical uniqueness of 'Entotheonella' compounds provide significant opportunities for ecological studies and drug discovery.

  12. Primeros registros para Colombia de cuatro taxones de la familia Tyrannidae (Aves: Passeriformes

    Directory of Open Access Journals (Sweden)

    Rojas R. Rosario

    1997-11-01

    Full Text Available En esta comunicación presentamos datos sobre cuatro taxones de la familia Tyrannidae que representan registros nuevos para el territorio colombiano, todos respaldados con especímenes en la colección del Instituto de Ciencias Naturales (ICN. La mayoría de los registros son del campo petrolero de Caño Limón, a unos 55 km al occidente de la ciudad de Arauca, en la parte septentrional del Departamento de Arauca. Las características de este sitio y datos generales de su avifauna fueron presentados por McN ish & Stiles (1992, Yun análisis detallado de la ecología y afinidades biogeográficas de esta avifauna fue realizado por Rojas & Piragua (1992.

  13. The correct name of the taxon that contains the type strain of Rhodococcus equi.

    Science.gov (United States)

    Tindall, B J

    2014-01-01

    Based on a nomenclatural point of view, the name Rhodococcus equi is associated, as required by the Bacteriological Code, with a defined position, rank and circumscription. A search of the literature indicates that the name Rhodococcus equi (Magnusson 1923) Goodfellow and Alderson 1977 has also been shown to be a synonym of Corynebacterium equi Magnusson 1923, Corynebacterium hoagii (Morse 1912) Eberson 1918 and Nocardia restricta (Turfitt 1944) McClung 1974. Application of the rules of the Bacteriological Code together with the currently inferred taxonomic concept associated with the species bearing the name Rhodococcus equi indicates that this is not the correct name of this taxon and the use of that name in the context of a circumscription that includes the type strain of the species Corynebacterium hoagii is contrary to the Rules of the Code.

  14. 'Candidatus Phytoplasma hispanicum', a novel taxon associated with Mexican periwinkle virescence disease of Catharanthus roseus.

    Science.gov (United States)

    Davis, Robert E; Harrison, Nigel A; Zhao, Yan; Wei, Wei; Dally, Ellen L

    2016-09-01

    Mexican periwinkle virescence (MPV) phytoplasma was originally discovered in diseased plants of Madagascar periwinkle (Catharanthus roseus) in Yucatán, Mexico. On the basis of results from RFLP analysis of PCR-amplified 16S rRNA gene sequences, strain MPV was previously classified as the first known member of phytoplasma group 16SrXIII, and a new subgroup (16SrXIII-A) was established to accommodate MPV phytoplasma. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain MPV represents a lineage distinct from previously described 'CandidatusPhytoplasma' species. Nucleotide sequence alignments revealed that strain MPV shared less than 97.5 % 16S rRNA gene sequence similarity with all previously described 'Ca.Phytoplasma' species. Based on unique properties of the DNA, we propose recognition of Mexican periwinkle virescence phytoplasma strain MPV as representative of a novel taxon, 'CandidatusPhytoplasma hispanicum'.

  15. Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap.

    Science.gov (United States)

    Gokul, Jarishma K; Hodson, Andrew J; Saetnan, Eli R; Irvine-Fynn, Tristram D L; Westall, Philippa J; Detheridge, Andrew P; Takeuchi, Nozomu; Bussell, Jennifer; Mur, Luis A J; Edwards, Arwyn

    2016-08-01

    Microbial colonization of glacial ice surfaces incurs feedbacks which affect the melting rate of the ice surface. Ecosystems formed as microbe-mineral aggregates termed cryoconite locally reduce ice surface albedo and represent foci of biodiversity and biogeochemical cycling. Consequently, greater understanding the ecological processes in the formation of functional cryoconite ecosystems upon glacier surfaces is sought. Here, we present the first bacterial biogeography of an ice cap, evaluating the respective roles of dispersal, environmental and biotic filtration occurring at local scales in the assembly of cryoconite microbiota. 16S rRNA gene amplicon semiconductor sequencing of cryoconite colonizing a Svalbard ice cap coupled with digital elevation modelling of physical parameters reveals the bacterial community is dominated by a ubiquitous core of generalist taxa, with evidence for a moderate pairwise distance-decay relationship. While geographic position and melt season duration are prominent among environmental predictors of community structure, the core population of taxa appears highly influential in structuring the bacterial community. Taxon co-occurrence network analysis reveals a highly modular community structured by positive interactions with bottleneck taxa, predominantly Actinobacteria affiliated to isolates from soil humus. In contrast, the filamentous cyanobacterial taxon (assigned to Leptolyngbya/Phormidesmis pristleyi) which dominates the community and binds together granular cryoconite are poorly connected to other taxa. While our study targeted one ice cap, the prominent role of generalist core taxa with close environmental relatives across the global cryosphere indicate discrete roles for cosmopolitan Actinobacteria and Cyanobacteria as respective keystone taxa and ecosystem engineers of cryoconite ecosystems colonizing ice caps.

  16. On the complexity of the Saccharomyces bayanus taxon: hybridization and potential hybrid speciation.

    Directory of Open Access Journals (Sweden)

    Laura Pérez-Través

    Full Text Available Although the genus Saccharomyces has been thoroughly studied, some species in the genus has not yet been accurately resolved; an example is S. bayanus, a taxon that includes genetically diverse lineages of pure and hybrid strains. This diversity makes the assignation and classification of strains belonging to this species unclear and controversial. They have been subdivided by some authors into two varieties (bayanus and uvarum, which have been raised to the species level by others. In this work, we evaluate the complexity of 46 different strains included in the S. bayanus taxon by means of PCR-RFLP analysis and by sequencing of 34 gene regions and one mitochondrial gene. Using the sequence data, and based on the S. bayanus var. bayanus reference strain NBRC 1948, a hypothetical pure S. bayanus was reconstructed for these genes that showed alleles with similarity values lower than 97% with the S. bayanus var. uvarum strain CBS 7001, and of 99-100% with the non S. cerevisiae portion in S. pastorianus Weihenstephan 34/70 and with the new species S. eubayanus. Among the S. bayanus strains under study, different levels of homozygosity, hybridization and introgression were found; however, no pure S. bayanus var. bayanus strain was identified. These S. bayanus hybrids can be classified into two types: homozygous (type I and heterozygous hybrids (type II, indicating that they have been originated by different hybridization processes. Therefore, a putative evolutionary scenario involving two different hybridization events between a S. bayanus var. uvarum and unknown European S. eubayanus-like strains can be postulated to explain the genomic diversity observed in our S. bayanus var. bayanus strains.

  17. Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.

    Science.gov (United States)

    Cui, Hong; Xu, Dongfang; Chong, Steven S; Ramirez, Martin; Rodenhausen, Thomas; Macklin, James A; Ludäscher, Bertram; Morris, Robert A; Soto, Eduardo M; Koch, Nicolás Mongiardino

    2016-11-17

    Taxonomic descriptions are traditionally composed in natural language and published in a format that cannot be directly used by computers. The Exploring Taxon Concepts (ETC) project has been developing a set of web-based software tools that convert morphological descriptions published in telegraphic style to character data that can be reused and repurposed. This paper introduces the first semi-automated pipeline, to our knowledge, that converts morphological descriptions into taxon-character matrices to support systematics and evolutionary biology research. We then demonstrate and evaluate the use of the ETC Input Creation - Text Capture - Matrix Generation pipeline to generate body part measurement matrices from a set of 188 spider morphological descriptions and report the findings. From the given set of spider taxonomic publications, two versions of input (original and normalized) were generated and used by the ETC Text Capture and ETC Matrix Generation tools. The tools produced two corresponding spider body part measurement matrices, and the matrix from the normalized input was found to be much more similar to a gold standard matrix hand-curated by the scientist co-authors. Special conventions utilized in the original descriptions (e.g., the omission of measurement units) were attributed to the lower performance of using the original input. The results show that simple normalization of the description text greatly increased the quality of the machine-generated matrix and reduced edit effort. The machine-generated matrix also helped identify issues in the gold standard matrix. ETC Text Capture and ETC Matrix Generation are low-barrier and effective tools for extracting measurement values from spider taxonomic descriptions and are more effective when the descriptions are self-contained. Special conventions that make the description text less self-contained challenge automated extraction of data from biodiversity descriptions and hinder the automated reuse of the

  18. Ipangulines and minalobines, chemotaxonomic markers of the infrageneric Ipomoea taxon subgenus Quamoclit, section Mina.

    Science.gov (United States)

    Jenett-Siems, Kristina; Ott, Sonja C; Schimming, Thomas; Siems, Karsten; Müller, Frank; Hilker, Monika; Witte, Ludger; Hartmann, Thomas; Austin, Daniel F; Eich, Eckart

    2005-01-01

    A comprehensive GC-MS analysis of 8 Ipomoea species belonging to the subgenus Quamoclit, section Mina revealed that the members of this taxon form combinations of two necine bases with rare necic acids resulting in unique pyrrolizidine alkaloids. The occurrence and diversity of these metabolites show remarkable variations: Some species, especially Ipomoea hederifolia and Ipomoea lobata, are able to synthesize a large number of alkaloids whereas others, especially Ipomoea coccinea and Ipomoea quamoclit, are poor synthesizers with only a few compounds. However, these metabolites are apparently chemotaxonomic markers of this infrageneric taxon in general. They represent either esters of (-)-platynecine (altogether 48 ipangulines and 4 further esters including results of a previous study) or esters of (-)-trachelanthamidine, an additional novel structural type called minalobines (altogether 21 alkaloids). Both types are characterized by section-specific rare necic acids, e.g., ipangulinic/isoipangulinic acid, phenylacetic acid. The alkaloids of Ipomoea cholulensis, I. coccinea, I. hederifolia, Ipomoea neei, and Ipomoea quamoclit were mono and diesters of platynecine. Minalobines turned out to be metabolites of I. lobata (Cerv.) Thell. (syn.: Mina lobata Cerv.) lacking ipangulines. The major alkaloid of this species, minalobine R, has been isolated and identified as 9-O-(threo-2-hydroxy-2-methyl-3-phenylacetoxy-butyryl)-(-)-trachelanthamidine on the basis of spectral data. Apparently only two of the species included in this study, Ipomoea cristulata and Ipomoea sloteri, are able to synthesize both, ipangulines as well as minalobines. Minalobine O could be isolated as a major alkaloid of I. cristulata, its structure has been established as 9-O-(erythro-2-hydroxy-2-methyl-3-tigloyloxy-butyryl)-(-)-trachelanthamidine on the basis of spectral data.

  19. Estudos taxonômicos em Philacra Dwyer (Ochnaceae = Taxonomic studies on Philacra Dwyer (Ochnaceae

    Directory of Open Access Journals (Sweden)

    Fabíola Feres

    2006-07-01

    Full Text Available As espécies de Philacra são encontradas principalmente na fronteira Brasil-Venezuela, e dentre outros gêneros de Ochnaceae, é o mais próximo a Luxemburgia, cujas espécies ocorrem somente no Brasil, especialmente na Cadeia do Espinhaço. A análise taxonômica das espécies de Philacra foi realizada com base no material tipo e em espécimes depositados em herbários. O trabalho objetivou a redescrição do gênero, a elaboração da chave taxonômica e a redescrição das espécies. É apresentada a redescrição do gênero, suadistribuição geográfica, a chave de identificação e a redescrição das espécies. Atualmente, são reconhecidas quatro espécies de Philacra: P. auriculata Dwyer, P. duidae (Gleason Dwyer, P. longifolia (Gleason Dwyer e, P. steyermarkii Maguire.The species of Philacra are found mainly at the Brazil-Venezuela border. Among other Ochnaceae genera, this is the most closely related to Luxemburgia, which occurs only in Brazil, especially at theEspinhaço Range. The taxonomic analysis of Philacra species was based on the type material and herbarium specimens. This work aimed to redescribe the genus, to prepare a taxonomic key and to redescribe the species. The genus redescription and the geographical distribution, a key to the species and species redescription, are presented. Currently, four Philacra species are recognized: P. auriculata Dwyer, P. duidae (Gleason Dwyer, P. longifolia (Gleason Dwyer, and P. steyermarkii Maguire.

  20. Probing Cold Dense Nuclear Matter

    Energy Technology Data Exchange (ETDEWEB)

    Subedi, Ramesh; Shneor, R.; Monaghan, Peter; Anderson, Bryon; Aniol, Konrad; Annand, John; Arrington, John; Benaoum, Hachemi; Benmokhtar, Fatiha; Bertozzi, William; Boeglin, Werner; Chen, Jian-Ping; Choi, Seonho; Cisbani, Evaristo; Craver, Brandon; Frullani, Salvatore; Garibaldi, Franco; Gilad, Shalev; Gilman, Ronald; Glamazdin, Oleksandr; Hansen, Jens-Ole; Higinbotham, Douglas; Holmstrom, Timothy; Ibrahim, Hassan; Igarashi, Ryuichi; De Jager, Cornelis; Jans, Eddy; Jiang, Xiaodong; Kaufman, Lisa; Kelleher, Aidan; Kolarkar, Ameya; Kumbartzki, Gerfried; LeRose, John; Lindgren, Richard; Liyanage, Nilanga; Margaziotis, Demetrius; Markowitz, Pete; Marrone, Stefano; Mazouz, Malek; Meekins, David; Michaels, Robert; Moffit, Bryan; Perdrisat, Charles; Piasetzky, Eliazer; Potokar, Milan; Punjabi, Vina; Qiang, Yi; Reinhold, Joerg; Ron, Guy; Rosner, Guenther; Saha, Arunava; Sawatzky, Bradley; Shahinyan, Albert; Sirca, Simon; Slifer, Karl; Solvignon, Patricia; Sulkosky, Vince; Sulkosky, Vincent; Sulkosky, Vince; Sulkosky, Vincent; Urciuoli, Guido; Voutier, Eric; Watson, John; Weinstein, Lawrence; Wojtsekhowski, Bogdan; Wood, Stephen; Zheng, Xiaochao; Zhu, Lingyan

    2008-06-01

    The protons and neutrons in a nucleus can form strongly correlated nucleon pairs. Scattering experiments, in which a proton is knocked out of the nucleus with high-momentum transfer and high missing momentum, show that in carbon-12 the neutron-proton pairs are nearly 20 times as prevalent as proton-proton pairs and, by inference, neutron-neutron pairs. This difference between the types of pairs is due to the nature of the strong force and has implications for understanding cold dense nuclear systems such as neutron stars.

  1. Probing Cold Dense Nuclear Matter

    CERN Document Server

    Subedi, R; Monaghan, P; Anderson, B D; Aniol, K; Annand, J; Arrington, J; Benaoum, H; Benmokhtar, F; Bertozzi, W; Boeglin, W; Chen, J -P; Choi, Seonho; Cisbani, E; Craver, B; Frullani, S; Garibaldi, F; Gilad, S; Gilman, R; Glamazdin, O; Hansen, J -O; Higinbotham, D W; Holmstrom, T; Ibrahim, H; Igarashi, R; De Jager, C W; Jans, E; Jiang, X; Kaufman, L; Kelleher, A; Kolarkar, A; Kumbartzki, G; LeRose, J J; Lindgren, R; Liyanage, N; Margaziotis, D J; Markowitz, P; Marrone, S; Mazouz, M; Meekins, D; Michaels, R; Moffit, B; Perdrisat, C F; Piasetzky, E; Potokar, M; Punjabi, V; Qiang, Y; Reinhold, J; Ron, G; Rosner, G; Saha, A; Sawatzky, B; Shahinyan, A; Širca, S; Slifer, K; Solvignon, P; Sulkosky, V; Urciuoli, G; Voutier, E; Watson, J W; Weinstein, L B; Wojtsekhowski, B; Wood, S; Zheng, X -C; Zhu, L; 10.1126/science.1156675

    2009-01-01

    The protons and neutrons in a nucleus can form strongly correlated nucleon pairs. Scattering experiments, where a proton is knocked-out of the nucleus with high momentum transfer and high missing momentum, show that in 12C the neutron-proton pairs are nearly twenty times as prevalent as proton-proton pairs and, by inference, neutron-neutron pairs. This difference between the types of pairs is due to the nature of the strong force and has implications for understanding cold dense nuclear systems such as neutron stars.

  2. Dilatons in Dense Baryonic Matter

    CERN Document Server

    Lee, Hyun Kyu

    2013-01-01

    We discuss the role of dilaton, which is supposed to be representing a special feature of scale symmetry of QCD, trace anomaly, in dense baryonic matter. The idea that the scale symmetry breaking of QCD is responsible for the spontaneous breaking of chiral symmetry is presented along the similar spirit of Freund-Nambu model. The incorporation of dilaton field in the hidden local symmetric parity doublet model is briefly sketched with the possible role of dilaton at high density baryonic matter, the emergence of linear sigma model in dilaton limit.

  3. Problems with the claim of ecotype and taxon status of the wolf in the Great Lakes region

    Science.gov (United States)

    Cronin, Matthew A.; Mech, L. David

    2009-01-01

    Koblmuller et al. (2009) analysed molecular genetic data of the wolf in the Great Lakes (GL) region of the USA and concluded that the animal was a unique ecotype of grey wolf and that genetic data supported the population as a discrete wolf taxon. However, some of the literature that the researchers used to support their position actually did not, and additional confusion arises from indefinite use of terminology. Herein, we discuss the problems with designation of a wolf population as a taxon or ecotype without proper definition and assessment of criteria.

  4. El complex Euphorbia esula-E. virgata (Euphorbiaceae al nord-est de la península Ibèrica: precisions corològiques, ecològiques i taxonòmiques

    Directory of Open Access Journals (Sweden)

    Rovira, A.

    2012-12-01

    Full Text Available The recent discovery in the north-east of the Iberian Peninsula (southern and central Catalonia of three populations belonging to the Euphorbia esula–E. virgata complex (Euphorbiaceae prompted us to conduct a macro- and micromorphological study to ascertain their taxonomic identity. Only two previous records of plants from this complex existed in the area and these were gathered in 1908/1909 (previously identified as E. esula subsp. saratoi and in 1930 (E. esula s. l.. Our results indicate that all the material examined (both recent and old samples can be attributed to E. virgata, a taxon whose main distribution area lies in eastern Europe, and whose southwestern distribution limit lies in northeastern Iberian Peninsula. The macromorphological characteristics vary somewhat between populations and some individual plants bear a strong resemblance to forms that are usually referred to E. ×pseudovirgata, a supposed hybrid of E. virgata and E. esula. It is not possible, however, to confirm the presence of this hybrid in the region without further studies. After this study, E. esula subsp. esula should be excluded from Catalonia, Valencia and Aragon. The present-day populations we attribute to E. virgata are highly localized but dense. They are found in herbaceous habitats with clear anthropic influence (abandoned fields and the edges of roads and tracks, on deep, fairly dry soils. These habitats are similar to those typical of E. virgata in eastern and central Europe. It is likely that the populations are temporal and indeed in two of the three recent localities it has been confirmed that they date from after 2005. Current data suggest that this is a non-indigenous species, but in view of the fact that it was detected a century ago, the possibility that it is a rare indigenous species with itinerant populations cannot be ruled out.El hallazgo reciente de tres poblaciones del complejo Euphorbia esula-E. virgata (Euphorbiaceae en el nordeste de la

  5. Monte Carlo simulation of electrons in dense gases

    Science.gov (United States)

    Tattersall, Wade; Boyle, Greg; Cocks, Daniel; Buckman, Stephen; White, Ron

    2014-10-01

    We implement a Monte-Carlo simulation modelling the transport of electrons and positrons in dense gases and liquids, by using a dynamic structure factor that allows us to construct structure-modified effective cross sections. These account for the coherent effects caused by interactions with the relatively dense medium. The dynamic structure factor also allows us to model thermal gases in the same manner, without needing to directly sample the velocities of the neutral particles. We present the results of a series of Monte Carlo simulations that verify and apply this new technique, and make comparisons with macroscopic predictions and Boltzmann equation solutions. Financial support of the Australian Research Council.

  6. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

    Directory of Open Access Journals (Sweden)

    Sujai eKumar

    2013-11-01

    Full Text Available Generating the raw data for a de novo genome assembly project for a target eukaryotic species is relatively easy. This democratisation of access to large-scale data has allowed many research teams to plan to assemble the genomes of non-model organisms. These new genome targets are very different from the traditional, inbred, laboratory reared model organisms. They are often small, and cannot be isolated free of their environment - whether ingested food, the surrounding host organism of parasites, or commensal and symbiotic organisms attached to or within the individuals sampled. Preparation of pure DNA originating from a single species can be technically impossible, but assembly of mixed-organism DNA can be difficult, as most genome assemblers perform poorly when faced with multiple genomes in different stoichiometries. This class of problem is common in metagenomic datasets that deliberately try to capture all the genomes present in an environment, but replicon assembly is not often the goal of such programmes. Here we present an approach to extracting from mixed DNA sequence data subsets that correspond to single species' genomes and thus improving genome assembly. We use both numerical (proportion of GC bases and read coverage and biological (best-matching sequence in annotated databases indicators to aid partitioning of draft assembly contigs, and the reads that contribute to those contigs, into distinct bins that can then be subjected to rigorous, optimised assembly, through the use of taxon-annotated GC-coverage plots (TAGC plots. We also present Blobsplorer, a tool that aids exploration and selection of subsets from TAGC annotated data. Partitioning the data in this way can rescue poorly assembled genomes, and reveal unexpected symbionts and commensals in eukaryotic genome projects. The TAGC plot pipeline script is available from http://github.com/blaxterlab/blobology, and the Blobsplorer tool from https://github.com/mojones/Blobsplorer.

  7. Relationships of Cetacea (Artiodactyla) among mammals: increased taxon sampling alters interpretations of key fossils and character evolution.

    Science.gov (United States)

    Spaulding, Michelle; O'Leary, Maureen A; Gatesy, John

    2009-09-23

    Integration of diverse data (molecules, fossils) provides the most robust test of the phylogeny of cetaceans. Positioning key fossils is critical for reconstructing the character change from life on land to life in the water. We reexamine relationships of critical extinct taxa that impact our understanding of the origin of Cetacea. We do this in the context of the largest total evidence analysis of morphological and molecular information for Artiodactyla (661 phenotypic characters and 46,587 molecular characters, coded for 33 extant and 48 extinct taxa). We score morphological data for Carnivoramorpha, Creodonta, Lipotyphla, and the raoellid artiodactylan Indohyus and concentrate on determining which fossils are positioned along stem lineages to major artiodactylan crown clades. Shortest trees place Cetacea within Artiodactyla and close to Indohyus, with Mesonychia outside of Artiodactyla. The relationships of Mesonychia and Indohyus are highly unstable, however--in trees only two steps longer than minimum length, Mesonychia falls inside Artiodactyla and displaces Indohyus from a position close to Cetacea. Trees based only on data that fossilize continue to show the classic arrangement of relationships within Artiodactyla with Cetacea grouping outside the clade, a signal incongruent with the molecular data that dominate the total evidence result. Integration of new fossil material of Indohyus impacts placement of another extinct clade Mesonychia, pushing it much farther down the tree. The phylogenetic position of Indohyus suggests that the cetacean stem lineage included herbivorous and carnivorous aquatic species. We also conclude that extinct members of Cetancodonta (whales+hippopotamids) shared a derived ability to hear underwater sounds, even though several cetancodontans lack a pachyostotic auditory bulla. We revise the taxonomy of living and extinct artiodactylans and propose explicit node and stem-based definitions for the ingroup.

  8. Resolving the question of trypanosome monophyly: a comparative genomics approach using whole genome data sets with low taxon sampling.

    Science.gov (United States)

    Leonard, Guy; Soanes, Darren M; Stevens, Jamie R

    2011-07-01

    Since the first attempts to classify the evolutionary history of trypanosomes, there have been conflicting reports regarding their true phylogenetic relationships and, in particular, their relationships with other vertebrate trypanosomatids, e.g. Leishmania sp., as well as with the many insect parasitising trypanosomatids. Perhaps the issue that has provided most debate is that concerning the monophyly (or otherwise) of genus Trypanosoma and, even with the advent of molecular methods, the findings of numerous studies have varied significantly depending on the gene sequences analysed, number of taxa included, choice of outgroup and phylogenetic methodology. While of arguably limited applied importance, resolution of the question as to whether or not trypanosomes are monophyletic is critical to accurate evaluation of competing, mutually exclusive evolutionary scenarios for these parasites, namely the 'vertebrate-first' or 'insect-first' hypotheses. Therefore, a new approach, which could overcome previous limitations was needed. At its most simple, the problem can be defined within the framework of a trifurcated tree with three hypothetical positions at which the root can be placed. Using BLASTp and whole-genome gene-by-gene phylogenetic analyses of Trypanosoma brucei, Trypanosoma cruzi, Leishmania major and Naegleria gruberi, we have identified 599 gene markers--putative homologues--that were shared between the genomes of these four taxa. Of these, 75 homologous gene families that demonstrate monophyly of the kinetoplastids were identified. We then used these data sets in combination with an additional outgroup, Euglena gracilis, coupled with large-scale gene concatenation and diverse phylogenetic techniques to investigate the relative branching order of T. brucei, T. cruzi and L. major. Our findings confirm the monophyly of genus Trypanosoma and demonstrate that <1% of the analysed gene markers shared between the genomes of T. brucei, T. cruzi and L. major reject the hypothesis that the trypanosomes form a monophyletic group.

  9. Probing warm dense lithium by inelastic X-ray scattering

    Energy Technology Data Exchange (ETDEWEB)

    Garcia Saiz, E.; Riley, D. [School of Mathematics and Physics, Queen' s University of Belfast, Belfast (United Kingdom); Gregori, G. [Clarendon Laboratory, University of Oxford, Parks Road, Oxford (United Kingdom); Gregori, G.; Clarke, R.J.; Neely, D.; Notley, M.M.; Spindloe, C. [Central Laser Facility, Rutherford Appleton Laboratory, Chilton, Didcot, OX (United Kingdom); Gericke, D.O.; Vorberger, J.; Wunsch, K. [Centre for Fusion, Space and Astrophysics, Department of Physics, University of Warwick, Coventry (United Kingdom); Barbrel, B.; Koenig, M. [Laboratoire pour l' Utilisation des Laser Intenses, Ecole Polytechnique - Universite Paris-6, 91 - Palaiseau (France); Freeman, R.R.; Weber, R.L.; Van Woerkom, L. [Department of Physics, The Ohio State University, Columbus, Ohio (United States); Glenzer, S.H.; Landen, O.L.; Neumayer, P.; Price, D. [Lawrence Livermore National Laboratory, Livermore, California (United States); Khattak, F.Y. [Department of Physics, Kohat University of Science and Technology, Kohat-26000, NWFP (Pakistan); Pelka, A.; Roth, M.; Schollmeier, M. [Institut fur Kernphysik, Technische Universitat Darmstadt (Germany)

    2008-10-15

    One of the grand challenges of contemporary physics is understanding strongly interacting quantum systems comprising such diverse examples as ultracold atoms in traps, electrons in high-temperature superconductors and nuclear matter. Warm dense matter, defined by temperatures of a few electron volts and densities comparable with solids, is a complex state of such interacting matter. Moreover, the study of warm dense matter states has practical applications for controlled thermonuclear fusion, where it is encountered during the implosion phase, and it also represents laboratory analogues of astrophysical environments found in the core of planets and the crusts of old stars. Here we demonstrate how warm dense matter states can be diagnosed and structural properties can be obtained by inelastic X-ray scattering measurements on a compressed lithium sample. Combining experiments and ab initio simulations enables us to determine its microscopic state and to evaluate more approximate theoretical models for the ionic structure. (authors)

  10. Warm dense matter and Thomson scattering at FLASH

    Energy Technology Data Exchange (ETDEWEB)

    Faeustlin, Roland Rainer

    2010-05-15

    X-ray free electron lasers are powerful tools to investigate moderately to strongly correlated solid density low temperature plasmas, named warm dense matter. These plasmas are of most interest for astrophysics and laser plasma interaction, particularly inertial confinement fusion. This work utilizes the ultrashort soft x-ray pulse duration and high brilliance of the free electron laser in Hamburg, FLASH, to generate warm dense matter and to study its ultrafast processes. The techniques applied are absorption measurement, emission spectroscopy and Thomson scattering. Radiative hydrodynamics and Thomson scattering simulations are used to investigate the impact of temperature and density gradients in the sample and to fit the experimental data. The measurements result in a comprehensive picture of soft x-ray matter interaction related to warm dense matter and yield insight into ultrafast equilibration and relaxation mechanisms, in particular impact ionization and radiative recombination. (orig.)

  11. Giant Galápagos tortoises; molecular genetic analyses identify a trans-island hybrid in a repatriation program of an endangered taxon

    Directory of Open Access Journals (Sweden)

    Caccone Adalgisa

    2007-02-01

    Full Text Available Abstract Background Giant Galápagos tortoises on the island of Española have been the focus of an intensive captive breeding-repatriation programme for over 35 years that saved the taxon from extinction. However, analysis of 118 samples from released individuals indicated that the bias sex ratio and large variance in reproductive success among the 15 breeders has severely reduced the effective population size (Ne. Results We report here that an analysis of an additional 473 captive-bred tortoises released back to the island reveals an individual (E1465 that exhibits nuclear microsatellite alleles not found in any of the 15 breeders. Statistical analyses incorporating genotypes of 304 field-sampled individuals from all populations on the major islands indicate that E1465 is most probably a hybrid between an Española female tortoise and a male from the island of Pinzón, likely present on Española due to human transport. Conclusion Removal of E1465 as well as its father and possible (half-siblings is warranted to prevent further contamination within this taxon of particular conservation significance. Despite this detected single contamination, it is highly noteworthy to emphasize the success of this repatriation program conducted over nearly 40 years and involving release of over 2000 captive-bred tortoises that now reproduce in situ. The incorporation of molecular genetic analysis of the program is providing guidance that will aid in monitoring the genetic integrity of this ambitious effort to restore a unique linage of a spectacular animal.

  12. Phytophthora aquimorbida sp. nov. and Phytophthora taxon 'aquatilis' recovered from irrigation reservoirs and a stream in Virginia, USA.

    Science.gov (United States)

    Hong, Chuanxue; Richardson, Patricia A; Hao, Wei; Ghimire, Sita R; Kong, Ping; Moorman, Gary W; Lea-Cox, John D; Ross, David S

    2012-01-01

    Two distinct subgroups (L2 and A(-2)) were recovered from irrigation reservoirs and a stream in Virginia, USA. After molecular, morphological and physiological examinations, the L2 subgroup was named Phytophthora aquimorbida and the A(-2) designated as Phytophthora taxon 'aquatilis'. Both taxa are homothallic. P. aquimorbida is characterized by its noncaducous and nonpapillate sporangia, catenulate and radiating hyphal swellings and thick-walled plerotic oospores formed in globose oogonia mostly in the absence of an antheridium. P. taxon 'aquatilis' produces plerotic oospores in globose oogonia mostly with a paragynous antheridium. It has semi-papillate, caducous sporangia with variable pedicels, but it does not have hyphal swelling. Analyses of ITS, CO1, β-tubulin and NADH1 sequences revealed that P. aquimorbida is closely related to P. hydropathica, P. irrigata and P. parsiana, and P. taxon 'aquatilis' is related to P. multivesiculata. The optimum temperature for culture growth is 30 and 20 C for P. aquimorbida and P. taxon 'aquatilis' respectively. Both taxa were pathogenic to rhododendron plants and caused root discoloration, pale leaves, wilting, tip necrosis and dieback. Their plant biosecurity risk also is discussed.

  13. Dense genomic sampling identifies highways of pneumococcal recombination.

    Science.gov (United States)

    Chewapreecha, Claire; Harris, Simon R; Croucher, Nicholas J; Turner, Claudia; Marttinen, Pekka; Cheng, Lu; Pessia, Alberto; Aanensen, David M; Mather, Alison E; Page, Andrew J; Salter, Susannah J; Harris, David; Nosten, Francois; Goldblatt, David; Corander, Jukka; Parkhill, Julian; Turner, Paul; Bentley, Stephen D

    2014-03-01

    Evasion of clinical interventions by Streptococcus pneumoniae occurs through selection of non-susceptible genomic variants. We report whole-genome sequencing of 3,085 pneumococcal carriage isolates from a 2.4-km(2) refugee camp. This sequencing provides unprecedented resolution of the process of recombination and its impact on population evolution. Genomic recombination hotspots show remarkable consistency between lineages, indicating common selective pressures acting at certain loci, particularly those associated with antibiotic resistance. Temporal changes in antibiotic consumption are reflected in changes in recombination trends, demonstrating rapid spread of resistance when selective pressure is high. The highest frequencies of receipt and donation of recombined DNA fragments were observed in non-encapsulated lineages, implying that this largely overlooked pneumococcal group, which is beyond the reach of current vaccines, may have a major role in genetic exchange and the adaptation of the species as a whole. These findings advance understanding of pneumococcal population dynamics and provide information for the design of future intervention strategies.

  14. Viscoelastic behavior of dense microemulsions

    Science.gov (United States)

    Cametti, C.; Codastefano, P.; D'arrigo, G.; Tartaglia, P.; Rouch, J.; Chen, S. H.

    1990-09-01

    We have performed extensive measurements of shear viscosity, ultrasonic absorption, and sound velocity in a ternary system consisting of water-decane-sodium di(2-ethylhexyl)sulfo- succinate(AOT), in the one-phase region where it forms a water-in-oil microemulsion. We observe a rapid increase of the static shear viscosity in the dense microemulsion region. Correspondingly the sound absorption shows unambiguous evidence of a viscoelastic behavior. The absorption data for various volume fractions and temperatures can be reduced to a universal curve by scaling both the absorption and the frequency by the measured static shear viscosity. The sound absorption can be interpreted as coming from the high-frequency tail of the viscoelastic relaxation, describable by a Cole-Cole relaxation formula with unusually small elastic moduli.

  15. Neutrino Oscillations in Dense Matter

    Science.gov (United States)

    Lobanov, A. E.

    2017-03-01

    A modification of the electroweak theory, where the fermions with the same electroweak quantum numbers are combined in multiplets and are treated as different quantum states of a single particle, is proposed. In this model, mixing and oscillations of particles arise as a direct consequence of the general principles of quantum field theory. The developed approach enables one to calculate the probabilities of the processes taking place in the detector at long distances from the particle source. Calculations of higher-order processes, including computation of the contributions due to radiative corrections, can be performed in the framework of the perturbation theory using the regular diagram technique. As a result, the analog to the Dirac-Schwinger equation of quantum electrodynamics describing neutrino oscillations and its spin rotation in dense matter can be obtained.

  16. DPIS for warm dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Kondo, K.; Kanesue, T.; Horioka, K.; Okamura, M.

    2010-05-23

    Warm Dense Matter (WDM) offers an challenging problem because WDM, which is beyond ideal plasma, is in a low temperature and high density state with partially degenerate electrons and coupled ions. WDM is a common state of matter in astrophysical objects such as cores of giant planets and white dwarfs. The WDM studies require large energy deposition into a small target volume in a shorter time than the hydrodynamical time and need uniformity across the full thickness of the target. Since moderate energy ion beams ({approx} 0.3 MeV/u) can be useful tool for WDM physics, we propose WDM generation using Direct Plasma Injection Scheme (DPIS). In the DPIS, laser ion source is connected to the Radio Frequency Quadrupole (RFQ) linear accelerator directly without the beam transport line. DPIS with a realistic final focus and a linear accelerator can produce WDM.

  17. Revisión taxonómica de la Familia Iridaceae para Colombia Revisión taxonómica de la Familia Iridaceae para Colombia

    Directory of Open Access Journals (Sweden)

    Betancur Betancur Julio César

    2000-06-01

    Full Text Available RESUMENSe presenta la revisión taxonómica de la familia Iridaceaepara Colombia que incluye descripcionesmorfológicas de la familia, los géneros y las especies. Se presentan claves dicotómicas paraidentificar los géneros y las especies y un análisis de la distribución geográfica y altitudinal de lasmismas. En Sisyrinchiumse incluye, asi mismo, una clave sinóptica. Se encontraron 24 especies,distribuidas en 10 géneros, de las cuales dos son naturalizadas (Crocosmia x crocosmiifloray Tigridiapavonia, 4 son nuevos registros para el país (Eleutherine bulbosa, Orthrosanthus acorifolius, O. monadelphusy Sisyrinchium mandonii, 4 tienen distribución restringida o endémica (Cipura sp. nov.?, Cypella sp.nov.?, Hesperoxiphium huilensey Libertia colombiana y dos son posibles especies nuevas para la ciencia(Cipura sp. nov.?, Cypella sp. nov.?. Las especies se distribuyen con preferencia por la región Andina(ca. 80% y Caribe (ca. 42%, mientras que la región Pacífica es la más pobremente representada(ca. 4 %. Las subregiones del país con más especies son el Altiplano Cundiboyacense, el MacizoAntioqueño, la Montaña Santandereana, las vertientes Oriental Andina y Caucana y la SierraNevada de Santa Marta. Por otra parte, las especies de Iridaceaecrecen desde el nivel del mar hasta4.500 m de altitud, pero la mayor concentración se encuentra entre 2.400 y 3.600 m, lo que co-rresponde a la abundacia de especies de los géneros Orthrosanthusy Sisyrinchium, siendo éste últimoel género que presenta la mayor amplitud de distribución altitudinal. Colombia no es un país espe-cialmente rico al compararlo con otros vecinos y regiones cercanas. Sin embargo, los páramos deColombia tienen mayor diversidad en Iridaceaeque todo el conjunto de los páramos americanos.This taxonomic revision for Colombian Iridaceaeincludes the family, genera and speciesmorphological descriptions. A geographic distribution and elevational range analysis for thespecies, a

  18. 5G Ultra-Dense Cellular Networks

    OpenAIRE

    Ge, Xiaohu; Tu, Song; Mao, Guoqiang; Wang, Cheng-xiang; Han, Tao

    2015-01-01

    Traditional ultra-dense wireless networks are recommended as a complement for cellular networks and are deployed in partial areas, such as hotspot and indoor scenarios. Based on the massive multiple-input multi-output (MIMO) antennas and the millimeter wavecommunication technologies, the 5G ultra-dense cellular network is proposed to deploy in overall cellular scenarios. Moreover, a distribution network architecture is presented for 5G ultra-dense cellular networks. Furthermore, the backhaul ...

  19. Interference Coordination for Dense Wireless Networks

    DEFF Research Database (Denmark)

    Soret, Beatriz; Pedersen, Klaus I.; Jørgensen, Niels T.K.

    2015-01-01

    The promise of ubiquitous and super-fast connectivity for the upcoming years will be in large part fulfilled by the addition of base stations and spectral aggregation. The resulting very dense networks (DenseNets) will face a number of technical challenges. Among others, the interference emerges ...... simply react to an identified interference problem. As an example, we propose two algorithms to apply time domain and frequency domain small cell interference coordination in a DenseNet....

  20. HOW GOOD IS A DENSE SHOP SCHEDULE?

    Institute of Scientific and Technical Information of China (English)

    陈礴; 俞文(鱼此)

    2001-01-01

    In this paper, we study a class of simple and easy-to-construct shop schedules, known as dense schedules. We present tight bounds on the maximum deviation in makespan of dense flow-shop and job-shop schedules from their optimal ones. For dense open-shop schedules, we do the same for the special case of four machines and thus add a stronger supporting case for proving a standing conjecture.

  1. Breaking Dense Structures: Proving Stability of Densely Structured Hybrid Systems

    Directory of Open Access Journals (Sweden)

    Eike Möhlmann

    2015-06-01

    Full Text Available Abstraction and refinement is widely used in software development. Such techniques are valuable since they allow to handle even more complex systems. One key point is the ability to decompose a large system into subsystems, analyze those subsystems and deduce properties of the larger system. As cyber-physical systems tend to become more and more complex, such techniques become more appealing. In 2009, Oehlerking and Theel presented a (de-composition technique for hybrid systems. This technique is graph-based and constructs a Lyapunov function for hybrid systems having a complex discrete state space. The technique consists of (1 decomposing the underlying graph of the hybrid system into subgraphs, (2 computing multiple local Lyapunov functions for the subgraphs, and finally (3 composing the local Lyapunov functions into a piecewise Lyapunov function. A Lyapunov function can serve multiple purposes, e.g., it certifies stability or termination of a system or allows to construct invariant sets, which in turn may be used to certify safety and security. In this paper, we propose an improvement to the decomposing technique, which relaxes the graph structure before applying the decomposition technique. Our relaxation significantly reduces the connectivity of the graph by exploiting super-dense switching. The relaxation makes the decomposition technique more efficient on one hand and on the other allows to decompose a wider range of graph structures.

  2. Integration of approaches in David Wake's model-taxon research platform for evolutionary morphology.

    Science.gov (United States)

    Griesemer, James

    2013-12-01

    What gets integrated in integrative scientific practices has been a topic of much discussion. Traditional views focus on theories and explanations, with ideas of reduction and unification dominating the conversation. More recent ideas focus on disciplines, fields, or specialties; models, mechanisms, or methods; phenomena, problems. How integration works looks different on each of these views since the objects of integration are ontologically and epistemically various: statements, boundary conditions, practices, protocols, methods, variables, parameters, domains, laboratories, and questions all have their own structures, functions and logics. I focus on one particular kind of scientific practice, integration of "approaches" in the context of a research system operating on a special kind of "platform." Rather than trace a network of interactions among people, practices, and theoretical entities to be integrated, in this essay I focus on the work of a single investigator, David Wake. I describe Wake's practice of integrative evolutionary biology and how his integration of approaches among biological specialties worked in tandem with his development of the salamanders as a model taxon, which he used as a platform to solve, re-work and update problems that would not have been solved so well by non-integrative approaches. The larger goal of the project to which this paper contributes is a counter-narrative to the story of 20th century life sciences as the rise and march of the model organisms and decline of natural history.

  3. Indication strength of coenological similarity patterns based on genus-level taxon lists and prevalence distribution

    Directory of Open Access Journals (Sweden)

    Veronika Gergócs

    2010-12-01

    Full Text Available Several methods and indicators can be used to evaluate the coenological state of a given habitat, the ones which can be created simply, quickly, standardizably and reliably and which can be used to exactly quantify the state of a given habitat in point of numbers can be of outstanding practical importance in ecology. One possible method is the examination of the genera which can be found in a given habitat in great abundance and have little number of species and various ecological characteristics. For this purpose one of the most appropriate groups is that of ground-dwelling oribatid mites (Acari: Oribatida.In our research, joining the bioindication methodological project of the “Adaptation to Climate Change” Research Group of the Hungarian Academy of Sciences, the indication strength of genus-level taxon lists and the effects of the main pattern-generating factors creating similarity patterns were analysed with the help of data series on oribatid mites collected by us and originating from literature. Our aim was to develop a method with the help of which the difference expressed with distance functions between two oribatid mite genus lists originating from any sources can correspond to spatial and temporal scales. Our results prove that these genus lists are able to express the spatial distance of the habitats. With the help of this base of comparison changes in disturbed or transformed habitats can be expressed by means of oribatid mite communities, with spatial and temporal distances.

  4. Combining distance matrices on identical taxon sets for multi-gene analysis with singular value decomposition.

    Directory of Open Access Journals (Sweden)

    Melanie Abeysundera

    Full Text Available We present a simple and effective method for combining distance matrices from multiple genes on identical taxon sets to obtain a single representative distance matrix from which to derive a combined-gene phylogenetic tree. The method applies singular value decomposition (SVD to extract the greatest common signal present in the distances obtained from each gene. The first right eigenvector of the SVD, which corresponds to a weighted average of the distance matrices of all genes, can thus be used to derive a representative tree from multiple genes. We apply our method to three well known data sets and estimate the uncertainty using bootstrap methods. Our results show that this method works well for these three data sets and that the uncertainty in these estimates is small. A simulation study is conducted to compare the performance of our method with several other distance based approaches (namely SDM, SDM* and ACS97, and we find the performances of all these approaches are comparable in the consensus setting. The computational complexity of our method is similar to that of SDM. Besides constructing a representative tree from multiple genes, we also demonstrate how the subsequent eigenvalues and eigenvectors may be used to identify if there are conflicting signals in the data and which genes might be influential or outliers for the estimated combined-gene tree.

  5. Trade-off between taxon diversity and functional diversity in European lake ecosystems.

    Science.gov (United States)

    Grossmann, Lars; Beisser, Daniela; Bock, Christina; Chatzinotas, Antonis; Jensen, Manfred; Preisfeld, Angelika; Psenner, Roland; Rahmann, Sven; Wodniok, Sabina; Boenigk, Jens

    2016-12-01

    Inferring ecosystem functioning and ecosystem services through inspections of the species inventory is a major aspect of ecological field studies. Ecosystem functions are often stable despite considerable species turnover. Using metatranscriptome analyses, we analyse a thus-far unparalleled freshwater data set which comprises 21 mainland European freshwater lakes from the Sierra Nevada (Spain) to the Carpathian Mountains (Romania) and from northern Germany to the Apennines (Italy) and covers an altitudinal range from 38 m above sea level (a.s.l) to 3110 m a.s.l. The dominant taxa were Chlorophyta and streptophytic algae, Ciliophora, Bacillariophyta and Chrysophyta. Metatranscriptomics provided insights into differences in community composition and into functional diversity via the relative share of taxa to the overall read abundance of distinct functional genes on the ecosystem level. The dominant metabolic pathways in terms of the fraction of expressed sequences in the cDNA libraries were affiliated with primary metabolism, specifically oxidative phosphorylation, photosynthesis and the TCA cycle. Our analyses indicate that community composition is a good first proxy for the analysis of ecosystem functions. However, differential gene regulation modifies the relative importance of taxa in distinct pathways. Whereas taxon composition varies considerably between lakes, the relative importance of distinct metabolic pathways is much more stable, indicating that ecosystem functioning is buffered against shifts in community composition through a functional redundancy of taxa.

  6. Single cell genomics of uncultured, health-associated Tannerella BU063 (Oral Taxon 286 and comparison to the closely related pathogen Tannerella forsythia.

    Directory of Open Access Journals (Sweden)

    Clifford J Beall

    Full Text Available The uncultivated bacterium Tannerella BU063 (oral taxon 286 is the closest relative to the periodontal pathogen Tannerella forsythia, but is not disease-associated itself. Using a single cell genomics approach, we isolated 12 individual BU063 cells by flow cytometry, and we amplified and sequenced their genomes. Comparative analyses of the assembled genomic scaffolds and their gene contents allowed us to study the diversity of this taxon within the oral community of a single human donor that provided the sample. Eight different BU063 genotypes were represented, all about 5% divergent at the nucleotide level. There were 2 pairs of cells and one group of three that were more highly identical, and may represent clonal populations. We did pooled assemblies on the nearly identical genomes to increase the assembled genomic coverage. The presence of a set of 66 "core" housekeeping genes showed that two of the single cell assemblies and the assembly derived from the three putatively identical cells were essentially complete. As expected, the genome of BU063 is more similar to Tannerella forsythia than any other known genome, although there are significant differences, including a 44% difference in gene content, changes in metabolic pathways, loss of synteny, and an 8-9% difference in GC content. Several identified virulence genes of T. forsythia are not found in BU063 including karilysin, prtH, and bspA. The absence of these genes may explain the lack of periodontal pathogenesis by this species and provides a new foundation to further understand the genome evolution and mechanisms of bacterial-host interaction in closely related oral microbes with different pathogenicity potential.

  7. Single cell genomics of uncultured, health-associated Tannerella BU063 (Oral Taxon 286) and comparison to the closely related pathogen Tannerella forsythia.

    Science.gov (United States)

    Beall, Clifford J; Campbell, Alisha G; Dayeh, Daniel M; Griffen, Ann L; Podar, Mircea; Leys, Eugene J

    2014-01-01

    The uncultivated bacterium Tannerella BU063 (oral taxon 286) is the closest relative to the periodontal pathogen Tannerella forsythia, but is not disease-associated itself. Using a single cell genomics approach, we isolated 12 individual BU063 cells by flow cytometry, and we amplified and sequenced their genomes. Comparative analyses of the assembled genomic scaffolds and their gene contents allowed us to study the diversity of this taxon within the oral community of a single human donor that provided the sample. Eight different BU063 genotypes were represented, all about 5% divergent at the nucleotide level. There were 2 pairs of cells and one group of three that were more highly identical, and may represent clonal populations. We did pooled assemblies on the nearly identical genomes to increase the assembled genomic coverage. The presence of a set of 66 "core" housekeeping genes showed that two of the single cell assemblies and the assembly derived from the three putatively identical cells were essentially complete. As expected, the genome of BU063 is more similar to Tannerella forsythia than any other known genome, although there are significant differences, including a 44% difference in gene content, changes in metabolic pathways, loss of synteny, and an 8-9% difference in GC content. Several identified virulence genes of T. forsythia are not found in BU063 including karilysin, prtH, and bspA. The absence of these genes may explain the lack of periodontal pathogenesis by this species and provides a new foundation to further understand the genome evolution and mechanisms of bacterial-host interaction in closely related oral microbes with different pathogenicity potential.

  8. Optimal probabilistic dense coding schemes

    Science.gov (United States)

    Kögler, Roger A.; Neves, Leonardo

    2017-04-01

    Dense coding with non-maximally entangled states has been investigated in many different scenarios. We revisit this problem for protocols adopting the standard encoding scheme. In this case, the set of possible classical messages cannot be perfectly distinguished due to the non-orthogonality of the quantum states carrying them. So far, the decoding process has been approached in two ways: (i) The message is always inferred, but with an associated (minimum) error; (ii) the message is inferred without error, but only sometimes; in case of failure, nothing else is done. Here, we generalize on these approaches and propose novel optimal probabilistic decoding schemes. The first uses quantum-state separation to increase the distinguishability of the messages with an optimal success probability. This scheme is shown to include (i) and (ii) as special cases and continuously interpolate between them, which enables the decoder to trade-off between the level of confidence desired to identify the received messages and the success probability for doing so. The second scheme, called multistage decoding, applies only for qudits ( d-level quantum systems with d>2) and consists of further attempts in the state identification process in case of failure in the first one. We show that this scheme is advantageous over (ii) as it increases the mutual information between the sender and receiver.

  9. STAR FORMATION IN DENSE CLUSTERS

    Energy Technology Data Exchange (ETDEWEB)

    Myers, Philip C., E-mail: pmyers@cfa.harvard.edu [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States)

    2011-12-10

    A model of core-clump accretion with equally likely stopping describes star formation in the dense parts of clusters, where models of isolated collapsing cores may not apply. Each core accretes at a constant rate onto its protostar, while the surrounding clump gas accretes as a power of protostar mass. Short accretion flows resemble Shu accretion and make low-mass stars. Long flows resemble reduced Bondi accretion and make massive stars. Accretion stops due to environmental processes of dynamical ejection, gravitational competition, and gas dispersal by stellar feedback, independent of initial core structure. The model matches the field star initial mass function (IMF) from 0.01 to more than 10 solar masses. The core accretion rate and the mean accretion duration set the peak of the IMF, independent of the local Jeans mass. Massive protostars require the longest accretion durations, up to 0.5 Myr. The maximum protostar luminosity in a cluster indicates the mass and age of its oldest protostar. The distribution of protostar luminosities matches those in active star-forming regions if protostars have a constant birthrate but not if their births are coeval. For constant birthrate, the ratio of young stellar objects to protostars indicates the star-forming age of a cluster, typically {approx}1 Myr. The protostar accretion luminosity is typically less than its steady spherical value by a factor of {approx}2, consistent with models of episodic disk accretion.

  10. Star formation in dense clusters

    CERN Document Server

    Myers, Philip C

    2011-01-01

    A model of core-clump accretion with equally likely stopping describes star formation in the dense parts of clusters, where models of isolated collapsing cores may not apply. Each core accretes at a constant rate onto its protostar, while the surrounding clump gas accretes as a power of protostar mass. Short accretion flows resemble Shu accretion, and make low-mass stars. Long flows resemble reduced Bondi accretion and make massive stars. Accretion stops due to environmental processes of dynamical ejection, gravitational competition, and gas dispersal by stellar feedback, independent of initial core structure. The model matches the field star IMF from 0.01 to more than 10 solar masses. The core accretion rate and the mean accretion duration set the peak of the IMF, independent of the local Jeans mass. Massive protostars require the longest accretion durations, up to 0.5 Myr. The maximum protostar luminosity in a cluster indicates the mass and age of its oldest protostar. The distribution of protostar luminosi...

  11. Thermophysical properties of warm dense hydrogen

    CERN Document Server

    Holst, Bastian; Desjarlais, Michael P

    2007-01-01

    We study the thermophysical properties of warm dense hydrogen using quantum molecular dynamics simulations. New results are presented for the pair distribution functions, the equation of state, the Hugoniot curve, and the reflectivity. We compare with available experimental data and predictions of the chemical picture. Especially, we discuss the nonmetal-to-metal transition which occurs at about 40 GPa in the dense fluid.

  12. Heavy meson production in hot dense matter

    NARCIS (Netherlands)

    Tolos, Laura; Gamermann, Daniel; Garcia-Recio, Carmen; Molina, Raquel; Nieves, Juan; Oset, Eulogio; Ramos, Angels; Nieves, JM; Oset, E; Vacas, MJV

    2010-01-01

    The properties of charmed mesons in dense matter are studied using a unitary coupled-channel approach in the nuclear medium which takes into account Pauli-blocking effects and meson self-energies in a self-consistent manner. We obtain the open-charm meson spectral functions in this dense nuclear env

  13. Finding dense locations in indoor tracking data

    DEFF Research Database (Denmark)

    Ahmed, Tanvir; Pedersen, Torben Bach; Lu, Hua

    2014-01-01

    Finding the dense locations in large indoor spaces is very useful for getting overloaded locations, security, crowd management, indoor navigation, and guidance. Indoor tracking data can be very large and are not readily available for finding dense locations. This paper presents a graph-based mode...

  14. Marine Biodiversity in Temperate Western Australia: Multi-Taxon Surveys of Minden and Roe Reefs

    Directory of Open Access Journals (Sweden)

    Zoe Richards

    2016-03-01

    Full Text Available A growing body of evidence indicates that temperate marine ecosystems are being tropicalised due to the poleward extension of tropical species. Such climate mediated changes in species distribution patterns have the potential to profoundly alter temperate communities, as this advance can serve to push temperate taxa, many of which are southern Australian endemics, southward. These changes can lead to cascading effects for the biodiversity and function of coastal ecosystems, including contraction of ranges/habitats of sensitive cool water species. Hence there is growing concern for the future of Australia’s temperate marine biodiversity. Here we examine the diversity and abundance of marine flora and fauna at two reefs near Perth’s metropolitan area—Minden Reef and Roe Reef. We report the presence of 427 species of marine flora and fauna from eight taxon groups occurring in the Perth metropolitan area; at least three species of which appear to be new to science. Our data also extends the known range of 15 species, and in numerous instances, thousands of kilometres south from the Kimberley or Pilbara and verifies that tropicalisation of reef communities in the Perth metropolitan area is occurring. We report the presence of 24 species endemic to south-west Australia that may be at risk of range contractions with continued ocean warming. The results of these surveys add to our knowledge of local nearshore marine environments in the Perth metropolitan area and support the growing body of evidence that indicates a diverse and regionally significant marine fauna occurs in temperate Western Australia. Regular, repeated survey work across seasons is important in order to thoroughly document the status of marine biodiversity in this significant transition zone.

  15. Dense image correspondences for computer vision

    CERN Document Server

    Liu, Ce

    2016-01-01

    This book describes the fundamental building-block of many new computer vision systems: dense and robust correspondence estimation. Dense correspondence estimation techniques are now successfully being used to solve a wide range of computer vision problems, very different from the traditional applications such techniques were originally developed to solve. This book introduces the techniques used for establishing correspondences between challenging image pairs, the novel features used to make these techniques robust, and the many problems dense correspondences are now being used to solve. The book provides information to anyone attempting to utilize dense correspondences in order to solve new or existing computer vision problems. The editors describe how to solve many computer vision problems by using dense correspondence estimation. Finally, it surveys resources, code, and data necessary for expediting the development of effective correspondence-based computer vision systems.   ·         Provides i...

  16. FABRICATION OF FINE GRAINED DENSE HAP THROUGH SLIP CASTING ROUTE

    Directory of Open Access Journals (Sweden)

    HOWA BEGAM

    2011-02-01

    Full Text Available The purpose of this study is to synthesize nano-grained Calcium Hydroxyapatite (HAp through slip casting technique. For this, hydroxyapatite powders were synthesized using two methods, wet chemical method and Ammoniacal method. The as-prepared powders and calcined powders were characterized using XRD, FTIR, to study the phases of the powders. The hydroxyapatite powder calcined at 1000°C for 2hr was used to prepare 50 vol% slurry using DN40 (sodium olyacrylate as dispersing agent. After slip casting, the green bodies were sintered at different temperatures, 1100, 1200, 1250 and 1300°C with 2hr soaking time. The sintered dense samples were characterized for physical and mechanical behavior.Dense HaP samples were obtained at 1250C.

  17. Accurate segmentation of dense nanoparticles by partially discrete electron tomography

    Energy Technology Data Exchange (ETDEWEB)

    Roelandts, T., E-mail: tom.roelandts@ua.ac.be [IBBT-Vision Lab University of Antwerp, Universiteitsplein 1, 2610 Wilrijk (Belgium); Batenburg, K.J. [IBBT-Vision Lab University of Antwerp, Universiteitsplein 1, 2610 Wilrijk (Belgium); Centrum Wiskunde and Informatica, Science Park 123, 1098 XG Amsterdam (Netherlands); Biermans, E. [EMAT, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Kuebel, C. [Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen (Germany); Bals, S. [EMAT, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Sijbers, J. [IBBT-Vision Lab University of Antwerp, Universiteitsplein 1, 2610 Wilrijk (Belgium)

    2012-03-15

    Accurate segmentation of nanoparticles within various matrix materials is a difficult problem in electron tomography. Due to artifacts related to image series acquisition and reconstruction, global thresholding of reconstructions computed by established algorithms, such as weighted backprojection or SIRT, may result in unreliable and subjective segmentations. In this paper, we introduce the Partially Discrete Algebraic Reconstruction Technique (PDART) for computing accurate segmentations of dense nanoparticles of constant composition. The particles are segmented directly by the reconstruction algorithm, while the surrounding regions are reconstructed using continuously varying gray levels. As no properties are assumed for the other compositions of the sample, the technique can be applied to any sample where dense nanoparticles must be segmented, regardless of the surrounding compositions. For both experimental and simulated data, it is shown that PDART yields significantly more accurate segmentations than those obtained by optimal global thresholding of the SIRT reconstruction. -- Highlights: Black-Right-Pointing-Pointer We present a novel reconstruction method for partially discrete electron tomography. Black-Right-Pointing-Pointer It accurately segments dense nanoparticles directly during reconstruction. Black-Right-Pointing-Pointer The gray level to use for the nanoparticles is determined objectively. Black-Right-Pointing-Pointer The method expands the set of samples for which discrete tomography can be applied.

  18. Estudio taxonómico preliminar de los Grylloidea de España (Insecta, Orthoptera

    Directory of Open Access Journals (Sweden)

    Gorochov, A. V.

    2001-12-01

    >Modicogryllus (M. algirius (Saussure, 1877 is also recorded for the first time for France. On the other hand, we recognise Eugryllodes panteli (Cazurro, 1888 as a good species. An identification key with figures for the species of the genus Petaloptila is presented. The male genitalia of several species is also studied for the first time. The type series of Gryllodes macropterus Fuente, 1894 and Gryllotalpa septemdecimchromosomica Ortiz, 1958 and two paratypes of Gryllomorpha adspersa merobricensis Fernandes, 1959, stat. n. are localized. Lectotypes and paralectotypes of 17 taxons are designated. The distribution of all species is revised.

    En el presente trabajo se realiza un estudio taxonómico y faunístico de la superfamilia Grylloidea de España, incluyendo las islas Baleares y Canarias. Se examinan las 60 especies y subespecies que se han encontrado hasta ahora en este país, siendo seis de ellas nuevas para la ciencia: Petaloptila (P. fermini, P. (P. isabelae, P. (Zapetaloptila venosa, P. (Z. barrancoi, Paramogoplistes dentatus sp. n. y Grylloderes orlovskajae adventicius subsp. n.; asimismo se crean dos nuevos subgéneros Italoptila y Zapetaloptila. Se establece una sinonimia correcta del género Grylloderes Bolívar, 1894 (=Platygryllus Chopard, 1961, syn. dist., así como siete sinonimias específicas: Gryllomorpha (G. dalmatina (Ocskay, 1832 (=Gryllomorpha dalmatina strumae Andreeva, 1982, syn. n., Petaloptila (P. aliena (Brunner-Wattenwyl, 1882 (=Discoptila eitschbergeri Harz, 1976, syn. n., Acheta hispanicus Rambur, 1839 (=Gryllus erythrospilus Walker, 1869, syn. n., Gryllus hispanicus var. fusculus Bolívar, 1927, syn. n., Eumodicogryllus bordigalensis (Latreille, 1802 (=Gryllodes ferdinandi Bolívar, 1899, syn. n., Gryllus chinensis var. intermedia Bolívar, 1927, syn. n., Eugryllodes pipiens

  19. Kinetic chemistry of dense interstellar clouds

    Energy Technology Data Exchange (ETDEWEB)

    Graedel, T.E.; Langer, W.D.; Frerking, M.A.

    1982-03-01

    A detailed model of the time-dependent chemistry of dense interstellar clouds has been developed to study the dominant chemical processes in carbon and oxygen isotope fractionation, formation of nitrogen-containing molecules, evolution of product molecules as a function of cloud density and temperature, and other topics of interest. The full computation involves 328 individual reactions (expanded to 1067 to study carbon and oxygen isotope chemistry); photodegradation processes are unimportant in these dense clouds and are excluded.

  20. Equilibration dynamics and conductivity of warm dense hydrogen

    Science.gov (United States)

    Zastrau, U.; Sperling, P.; Becker, A.; Bornath, T.; Bredow, R.; Döppner, T.; Dziarzhytski, S.; Fennel, T.; Fletcher, L. B.; Förster, E.; Fortmann, C.; Glenzer, S. H.; Göde, S.; Gregori, G.; Harmand, M.; Hilbert, V.; Holst, B.; Laarmann, T.; Lee, H. J.; Ma, T.; Mithen, J. P.; Mitzner, R.; Murphy, C. D.; Nakatsutsumi, M.; Neumayer, P.; Przystawik, A.; Roling, S.; Schulz, M.; Siemer, B.; Skruszewicz, S.; Tiggesbäumker, J.; Toleikis, S.; Tschentscher, T.; White, T.; Wöstmann, M.; Zacharias, H.; Redmer, R.

    2014-07-01

    We investigate subpicosecond dynamics of warm dense hydrogen at the XUV free-electron laser facility (FLASH) at DESY (Hamburg). Ultrafast impulsive electron heating is initiated by a ≤300-fs short x-ray burst of 92-eV photon energy. A second pulse probes the sample via x-ray scattering at jitter-free variable time delay. We show that the initial molecular structure dissociates within (0.9±0.2) ps, allowing us to infer the energy transfer rate between electrons and ions. We evaluate Saha and Thomas-Fermi ionization models in radiation hydrodynamics simulations, predicting plasma parameters that are subsequently used to calculate the static structure factor. A conductivity model for partially ionized plasma is validated by two-temperature density-functional theory coupled to molecular dynamic simulations and agrees with the experimental data. Our results provide important insights and the needed experimental data on transport properties of dense plasmas.

  1. Ion-beam-driven warm dense matter experiments

    Science.gov (United States)

    Bieniosek, F. M.; Barnard, J. J.; Friedman, A.; Henestroza, E.; Jung, J. Y.; Leitner, M. A.; Lidia, S.; Logan, B. G.; More, R. M.; Ni, P. A.; Roy, P. K.; Seidl, P. A.; Waldron, W. L.

    2010-08-01

    As a technique for heating matter to high energy density, intense beams of heavy ions are capable of delivering precise and uniform beam energy deposition to a relatively large sample. The US heavy ion fusion science program has developed techniques for heating and diagnosing warm dense matter (WDM) targets. We have developed a WDM target chamber and a suite of target diagnostics including a fast multi-channel optical pyrometer, optical streak camera, VISAR, and high-speed gated cameras. Initial WDM experiments heat targets by both the compressed and uncompressed parts of the NDCX-I beam, and explore measurement of temperature, droplet formation and other target parameters. Continued improvements in beam tuning, bunch compression, and other upgrades are expected to yield higher temperature and pressure in the WDM targets. Future experiments are planned in areas such as dense electronegative targets, porous target homogenization and two-phase equation of state.

  2. Disentangling effects of abiotic factors and biotic interactions on cross-taxon congruence in species turnover patterns of plants, moths and beetles

    OpenAIRE

    Meichun Duan; Yunhui Liu; Zhenrong Yu; Jacques Baudry; Liangtao Li; Changliu Wang; Jan C. Axmacher

    2016-01-01

    High cross-taxon congruence in species diversity patterns is essential for the use of surrogate taxa in biodiversity conservation, but presence and strength of congruence in species turnover patterns, and the relative contributions of abiotic environmental factors and biotic interaction towards this congruence, remain poorly understood. In our study, we used variation partitioning in multiple regressions to quantify cross-taxon congruence in community dissimilarities of vascular plants, geome...

  3. Disentangling effects of abiotic factors and biotic interactions on cross-taxon congruence in species turnover patterns of plants, moths and beetles.

    Science.gov (United States)

    Duan, Meichun; Liu, Yunhui; Yu, Zhenrong; Baudry, Jacques; Li, Liangtao; Wang, Changliu; Axmacher, Jan C

    2016-01-01

    High cross-taxon congruence in species diversity patterns is essential for the use of surrogate taxa in biodiversity conservation, but presence and strength of congruence in species turnover patterns, and the relative contributions of abiotic environmental factors and biotic interaction towards this congruence, remain poorly understood. In our study, we used variation partitioning in multiple regressions to quantify cross-taxon congruence in community dissimilarities of vascular plants, geometrid and arciinid moths and carabid beetles, subsequently investigating their respective underpinning by abiotic factors and biotic interactions. Significant cross-taxon congruence observed across all taxon pairs was linked to their similar responses towards elevation change. Changes in the vegetation composition were closely linked to carabid turnover, with vegetation structure and associated microclimatic conditions proposed causes of this link. In contrast, moth assemblages appeared to be dominated by generalist species whose turnover was weakly associated with vegetation changes. Overall, abiotic factors exerted a stronger influence on cross-taxon congruence across our study sites than biotic interactions. The weak congruence in turnover observed particularly between plants and moths highlights the importance of multi-taxon approaches based on groupings of taxa with similar turnovers, rather than the use of single surrogate taxa or environmental proxies, in biodiversity assessments.

  4. Disentangling effects of abiotic factors and biotic interactions on cross-taxon congruence in species turnover patterns of plants, moths and beetles

    Science.gov (United States)

    Duan, Meichun; Liu, Yunhui; Yu, Zhenrong; Baudry, Jacques; Li, Liangtao; Wang, Changliu; Axmacher, Jan C.

    2016-04-01

    High cross-taxon congruence in species diversity patterns is essential for the use of surrogate taxa in biodiversity conservation, but presence and strength of congruence in species turnover patterns, and the relative contributions of abiotic environmental factors and biotic interaction towards this congruence, remain poorly understood. In our study, we used variation partitioning in multiple regressions to quantify cross-taxon congruence in community dissimilarities of vascular plants, geometrid and arciinid moths and carabid beetles, subsequently investigating their respective underpinning by abiotic factors and biotic interactions. Significant cross-taxon congruence observed across all taxon pairs was linked to their similar responses towards elevation change. Changes in the vegetation composition were closely linked to carabid turnover, with vegetation structure and associated microclimatic conditions proposed causes of this link. In contrast, moth assemblages appeared to be dominated by generalist species whose turnover was weakly associated with vegetation changes. Overall, abiotic factors exerted a stronger influence on cross-taxon congruence across our study sites than biotic interactions. The weak congruence in turnover observed particularly between plants and moths highlights the importance of multi-taxon approaches based on groupings of taxa with similar turnovers, rather than the use of single surrogate taxa or environmental proxies, in biodiversity assessments.

  5. Superconductivity in dense MgB2 wires.

    Science.gov (United States)

    Canfield, P C; Finnemore, D K; Bud'ko, S L; Ostenson, J E; Lapertot, G; Cunningham, C E; Petrovic, C

    2001-03-12

    MgB2 becomes superconducting just below 40 K. Whereas porous polycrystalline samples of MgB2 can be synthesized from boron powders, in this Letter we demonstrate that dense wires of MgB2 can be prepared by exposing boron filaments to Mg vapor. The resulting wires have a diameter of 160 microm, are better than 80% dense, and manifest the full chi = -1/4pi shielding in the superconducting state. Temperature-dependent resistivity measurements indicate that MgB2 is a highly conducting metal in the normal state with rho(40 K) = 0.38 microOmega cm. By using this value, an electronic mean-free path, l approximately 600 A can be estimated, indicating that MgB2 wires are well within the clean limit. Tc, Hc2(T), and Jc data indicate that MgB2 manifests comparable or better superconducting properties in dense wire form than it manifests as a sintered pellet.

  6. Gas dynamics in Massive Dense Cores in Cygnus-X

    CERN Document Server

    Csengeri, T; Schneider, N; Motte, F; Dib, S

    2010-01-01

    We study the kinematic properties of dense gas surrounding massive protostars recognized by Bontemps et a. (2010) in a sample of five Massive Dense Cores in Cygnus-X. We investigate whether turbulent support plays a major role in stabilizing the core against fragmentation into Jeans-mass objects or alternatively, the observed kinematics could indicate a high level of dynamics. We present IRAM 30m single-dish (HCO+ and H13CO+) and IRAM PdBI high angular-resolution observations of dense gas tracers (H13CO+ and H13CN) to reveal the kinematics of molecular gas at scales from 0.03 to 0.1 pc. Radiative transfer modeling shows that H13CO+ is depleted within the envelopes of massive protostars and traces the bulk of material surrounding the protostars rather than their inner envelopes. H13CN shows a better correspondence with the peak of the continuum emission, possibly due to abundance anomalies and specific chemistry in the close vicinity of massive protostars. Analyzing the line-widths we show that the observed li...

  7. Temporal stability in the genetic structure of Sarcoptes scabiei under the host-taxon law: empirical evidences from wildlife-derived Sarcoptes mite in Asturias, Spain

    Directory of Open Access Journals (Sweden)

    Rossi Luca

    2011-07-01

    Full Text Available Abstract Background Implicitly, parasite molecular studies assume temporal genetic stability. In this study we tested, for the first time to our knowledge, the extent of changes in genetic diversity and structure of Sarcoptes mite populations from Pyrenean chamois (Rupicapra pyrenaica in Asturias (Spain, using one multiplex of 9 microsatellite markers and Sarcoptes samples from sympatric Pyrenean chamois, red deer (Cervus elaphus, roe deer (Capreolus capreolus and red fox (Vulpes vulpes. Results The analysis of an 11-years interval period found little change in the genetic diversity (allelic diversity, and observed and expected heterozygosity. The temporal stability in the genetic diversity was confirmed by population structure analysis, which was not significantly variable over time. Population structure analysis revealed temporal stability in the genetic diversity of Sarcoptes mite under the host-taxon law (herbivore derived- and carnivore derived-Sarcoptes mite among the sympatric wild animals from Asturias. Conclusions The confirmation of parasite temporal genetic stability is of vital interest to allow generalizations to be made, which have further implications regarding the genetic structure, epidemiology and monitoring protocols of the ubiquitous Sarcoptes mite. This could eventually be applied to other parasite species.

  8. Seeking Verisimilitude in a Class: A Systematic Review of Evidence That the Criterial Clinical Symptoms of Schizophrenia Are Taxonic

    Science.gov (United States)

    Linscott, Richard J.; Allardyce, Judith; van Os, Jim

    2010-01-01

    This review examines whether there is evidence that the criterion symptoms of Diagnostic and Statistical Manual of Mental Disorders (Fourth Edition) (DSM-IV) schizophrenia are taxonic—that schizophrenia is not part of a single distribution of normality. Two taxometric methods, coherent cut kinetics (CCK) and latent variable modeling (LVM), are demonstrated to be sensitive to latent classes and, therefore, were regarded as providing relevant statistical evidence. A systematic literature search identified 24 articles describing analyses of 28 participant cohorts in which CCK or LVM methods were used with one or more criterion symptoms of schizophrenia. Virtually all analyses yielded results that, on first impression, favored taxonic over dimensional interpretations of the latent structure of schizophrenia. However, threats to the internal and external validity of these studies—including biased or inadequate analyses, violation of statistical assumptions, inadequate indicator screening, and the introduction of systematic error through recruitment and sampling—critically undermine this body of work. Uncertainties about the potential effects of perceptual biases, unimodal assessment, and item parceling are also identified, as are limitations in seeking to validate classes with single or double dissociations of outcomes. We conclude that there is no reason to seriously doubt a single-distribution model of schizophrenia because there is no evidence that provides a serious test of this null hypothesis. A second fundamental question remains outstanding: is schizophrenia truly a group of schizophrenias, with taxonic divisions separating its types? We make design and analysis suggestions for future research addressing these questions. PMID:19176472

  9. Unraveling the sequence information in COI barcode to achieve higher taxon assignment based on Indian freshwater fishes.

    Science.gov (United States)

    Chakraborty, Mohua; Ghosh, Sankar Kumar

    2015-04-01

    Efficacy of cytochrome c oxidase subunit I (COI) DNA barcode in higher taxon assignment is still under debate in spite of several attempts, using the conventional DNA barcoding methods, to assign higher taxa. Here we try to understand whether nucleotide and amino acid sequence in COI gene carry sufficient information to assign species to their higher taxonomic rank, using 160 species of Indian freshwater fishes. Our results reveal that with increase in the taxonomic rank, sequence conservation decreases for both nucleotides and amino acids. Order level exhibits lowest conservation with 50% of the nucleotides and amino acids being conserved. Among the variable sites, 30-50% were found to carry high information content within an order, while it was 70-80% within a family and 80-99% within a genus. High information content shows sites with almost conserved sequence but varying at one or two locations, which can be due to variations at species or population level. Thus, the potential of COI gene in higher taxon assignment is revealed with validation of ample inherent signals latent in the gene.

  10. Propagation of Complex Laser Pulses in Optically Dense Media

    Science.gov (United States)

    Fetterman, M. R.; Davis, J. C.; Goswami, D.; Yang, W.; Warren, W. S.

    1999-05-01

    Ultrafast laser pulses with complex envelopes (amplitude and frequency modulated) are used to excite an optically dense column of rubidium vapor. Pulse reshaping, stimulated emission dynamics, and residual electronic excitation in the Rb vapor are all shown to depend strongly on the laser pulse shape. Pulses that produce adiabatic passage in the optically thin limit exhibit more complex behavior in optically thick samples, including an unexpected dependence on the sign of the frequency sweep. Numerical solutions of the Maxwell-Bloch equations are shown to account for our results.

  11. Shrinkage/swelling of compacted clayey loose and dense soils

    Science.gov (United States)

    Nowamooz, Hossein; Masrouri, Farimah

    2009-11-01

    This Note presents an experimental study performed on expansive compacted loose and dense samples using osmotic oedometers. Several successive wetting and drying cycles were applied in a suction range between 0 and 8 MPa under different values of constant net vertical stress (15, 30, and 60 kPa). During the suction cycles, the dense samples showed cumulative swelling strains, while the loose samples showed volumetric shrinkage accumulation. At the end of the suction cycles, the volumetric strains converged to an equilibrium stage that indicated elastic behavior of the swelling soil for any further hydraulic variations. At this stage, the compression curves for the studied soil at the different imposed suctions (0, 2, and 8 MPa) converged towards the saturated state curve for the high applied vertical stresses. We defined this pressure as the saturation stress(P). The compression curves provided sufficient data to examine the soil mechanical behavior at the equilibrium stage. To cite this article: H. Nowamooz, F. Masrouri, C. R. Mecanique 337 (2009).

  12. DASC: Robust Dense Descriptor for Multi-Modal and Multi-Spectral Correspondence Estimation.

    Science.gov (United States)

    Kim, Seungryong; Min, Dongbo; Ham, Bumsub; Do, Minh N; Sohn, Kwanghoon

    2017-09-01

    Establishing dense correspondences between multiple images is a fundamental task in many applications. However, finding a reliable correspondence between multi-modal or multi-spectral images still remains unsolved due to their challenging photometric and geometric variations. In this paper, we propose a novel dense descriptor, called dense adaptive self-correlation (DASC), to estimate dense multi-modal and multi-spectral correspondences. Based on an observation that self-similarity existing within images is robust to imaging modality variations, we define the descriptor with a series of an adaptive self-correlation similarity measure between patches sampled by a randomized receptive field pooling, in which a sampling pattern is obtained using a discriminative learning. The computational redundancy of dense descriptors is dramatically reduced by applying fast edge-aware filtering. Furthermore, in order to address geometric variations including scale and rotation, we propose a geometry-invariant DASC (GI-DASC) descriptor that effectively leverages the DASC through a superpixel-based representation. For a quantitative evaluation of the GI-DASC, we build a novel multi-modal benchmark as varying photometric and geometric conditions. Experimental results demonstrate the outstanding performance of the DASC and GI-DASC in many cases of dense multi-modal and multi-spectral correspondences.

  13. DNS of turbulent flows of dense gases

    Science.gov (United States)

    Sciacovelli, L.; Cinnella, P.; Gloerfelt, X.; Grasso, F.

    2017-03-01

    The influence of dense gas effects on compressible turbulence is investigated by means of numerical simulations of the decay of compressible homogeneous isotropic turbulence (CHIT) and of supersonic turbulent flows through a plane channel (TCF). For both configurations, a parametric study on the Mach and Reynolds numbers is carried out. The dense gas considered in these parametric studies is PP11, a heavy fluorocarbon. The results are systematically compared to those obtained for a diatomic perfect gas (air). In our computations, the thermodynamic behaviour of the dense gases is modelled by means of the Martin-Hou equation of state. For CHIT cases, initial turbulent Mach numbers up to 1 are analyzed using mesh resolutions up to 5123. For TCF, bulk Mach numbers up to 3 and bulk Reynolds numbers up to 12000 are investigated. Average profiles of the thermodynamic quantities exhibit significant differences with respect to perfect-gas solutions for both of the configurations. For high-Mach CHIT, compressible structures are modified with respect to air, with weaker eddy shocklets and stronger expansions. In TCF, the velocity profiles of dense gas flows are much less sensitive to the Mach number and collapse reasonably well in the logarithmic region without any special need for compressible scalings, unlike the case of air, and the overall flow behaviour is midway between that of a variable-property liquid and that of a gas.

  14. Dense matter at RAON: Challenges and possibilities

    Science.gov (United States)

    Lee, Yujeong; Lee, Chang-Hwan; Gaitanos, T.; Kim, Youngman

    2016-11-01

    Dense nuclear matter is ubiquitous in modern nuclear physics because it is related to many interesting microscopic and macroscopic phenomena such as heavy ion collisions, nuclear structure, and neutron stars. The on-going rare isotope science project in Korea will build up a rare isotope accelerator complex called RAON. One of the main goals of RAON is to investigate rare isotope physics including dense nuclear matter. Using the relativistic Boltzmann-Uehling-Uhlenbeck (RBUU) transport code, we estimate the properties of nuclear matter that can be created from low-energy heavyion collisions at RAON.We give predictions for the maximum baryon density, the isospin asymmetry and the temperature of nuclear matter that would be formed during 197Au+197Au and 132Sn+64Ni reactions. With a large isospin asymmetry, various theoretical studies indicate that the critical densities or temperatures of phase transitions to exotic states decrease. Because a large isospin asymmetry is expected in the dense matter created at RAON, we discuss possibilities of observing exotic states of dense nuclear matter at RAON for large isospin asymmetry.

  15. Dense high temperature ceramic oxide superconductors

    Science.gov (United States)

    Landingham, Richard L.

    1993-01-01

    Dense superconducting ceramic oxide articles of manufacture and methods for producing these articles are described. Generally these articles are produced by first processing these superconducting oxides by ceramic processing techniques to optimize materials properties, followed by reestablishing the superconducting state in a desired portion of the ceramic oxide composite.

  16. Denseness of Numerical Radius Attaining Holomorphic Functions

    Directory of Open Access Journals (Sweden)

    Lee HanJu

    2009-01-01

    Full Text Available We study the density of numerical radius attaining holomorphic functions on certain Banach spaces using the Lindenstrauss method. In particular, it is shown that if a complex Banach space is locally uniformly convex, then the set of all numerical attaining elements of is dense in .

  17. Denseness of Numerical Radius Attaining Holomorphic Functions

    Directory of Open Access Journals (Sweden)

    Han Ju Lee

    2009-01-01

    Full Text Available We study the density of numerical radius attaining holomorphic functions on certain Banach spaces using the Lindenstrauss method. In particular, it is shown that if a complex Banach space X is locally uniformly convex, then the set of all numerical attaining elements of A(BX:X is dense in A(BX:X.

  18. Coalescence preference in dense packing of bubbles

    Science.gov (United States)

    Kim, Yeseul; Gim, Bopil; Gim, Bopil; Weon, Byung Mook

    2015-11-01

    Coalescence preference is the tendency that a merged bubble from the contact of two original bubbles (parent) tends to be near to the bigger parent. Here, we show that the coalescence preference can be blocked by densely packing of neighbor bubbles. We use high-speed high-resolution X-ray microscopy to clearly visualize individual coalescence phenomenon which occurs in micro scale seconds and inside dense packing of microbubbles with a local packing fraction of ~40%. Previous theory and experimental evidence predict a power of -5 between the relative coalescence position and the parent size. However, our new observation for coalescence preference in densely packed microbubbles shows a different power of -2. We believe that this result may be important to understand coalescence dynamics in dense packing of soft matter. This work (NRF-2013R1A22A04008115) was supported by Mid-career Researcher Program through NRF grant funded by the MEST and also was supported by Ministry of Science, ICT and Future Planning (2009-0082580) and by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry and Education, Science and Technology (NRF-2012R1A6A3A04039257).

  19. APT: Action localization Proposals from dense Trajectories

    NARCIS (Netherlands)

    van Gemert, J.C.; Jain, M.; Gati, E.; Snoek, C.G.M.; Xie, X.; Jones, M.W.; Tam, G.K.L.

    2015-01-01

    This paper is on action localization in video with the aid of spatio-temporal proposals. To alleviate the computational expensive video segmentation step of existing proposals, we propose bypassing the segmentations completely by generating proposals directly from the dense trajectories used to repr

  20. Dense ceramic membranes for methane conversion

    NARCIS (Netherlands)

    Bouwmeester, Henny J.M.

    2003-01-01

    Dense ceramic membranes made from mixed oxygen-ionic and electronic conducting perovskite-related oxides allow separation of oxygen from an air supply at elevated temperatures (>700 °C). By combining air separation and catalytic partial oxidation of methane to syngas into a ceramic membrane reactor,

  1. Improvements in accuracy of dense OPC models

    Science.gov (United States)

    Kallingal, Chidam; Oberschmidt, James; Viswanathan, Ramya; Abdo, Amr; Park, OSeo

    2008-10-01

    Performing model-based optical proximity correction (MBOPC) on layouts has become an integral part of patterning advanced integrated circuits. Earlier technologies used sparse OPC, the run times of which explode when the density of layouts increases. With the move to 45 nm technology node, this increase in run time has resulted in a shift to dense simulation OPC, which is pixel-based. The dense approach becomes more efficient at 45nm technology node and beyond. New OPC model forms can be used with the dense simulation OPC engine, providing the greater accuracy required by smaller technology nodes. Parameters in the optical model have to be optimized to achieve the required accuracy. Dense OPC uses a resist model with a different set of parameters than sparse OPC. The default search ranges used in the optimization of these resist parameters do not always result in the best accuracy. However, it is possible to improve the accuracy of the resist models by understanding the restrictions placed on the search ranges of the physical parameters during optimization. This paper will present results showing the correlation between accuracy of the models and some of these optical and resist parameters. The results will show that better optimization can improve the model fitness of features in both the calibration and verification set.

  2. Building a dense surface map incrementally from semi-dense point cloud and RGB images

    Institute of Scientific and Technical Information of China (English)

    Qian-shan LI; Rong XIONG; Shoudong HUANG; Yi-ming HUANG

    2015-01-01

    Building and using maps is a fundamental issue for bionic robots in fi eld applications. A dense surface map, which offers rich visual and geometric information, is an ideal representation of the environment for indoor/outdoor localization, navigation, and recognition tasks of these robots. Since most bionic robots can use only small light-weight laser scanners and cameras to acquire semi-dense point cloud and RGB images, we propose a method to generate a consistent and dense surface map from this kind of semi-dense point cloud and RGB images. The method contains two main steps: (1) generate a dense surface for every single scan of point cloud and its corresponding image(s) and (2) incrementally fuse the dense surface of a new scan into the whole map. In step (1) edge-aware resampling is realized by segmenting the scan of a point cloud in advance and resampling each sub-cloud separately. Noise within the scan is reduced and a dense surface is generated. In step (2) the average surface is estimated probabilistically and the non-coincidence of different scans is eliminated. Experiments demonstrate that our method works well in both indoor and outdoor semi-structured environments where there are regularly shaped ob jects.

  3. Molecular evidence for a single taxon, Anopheles nuneztovari s.l., from two endemic malaria regions in Colombia

    Directory of Open Access Journals (Sweden)

    Luz Marina Jaramillo

    2011-12-01

    Full Text Available To elucidate the Anopheles nuneztovari s.l. taxonomic status at a microgeographic level in four malaria endemic localities from Antioquia and Córdoba, Colombia, fragments of the cytochrome oxidase subunit I (COI and the white gene were used. The COI analysis showed low genetic differentiation with fixation index (F ST levels between -0.02-0.137 and Nm values between 3-∞, indicating the presence of high gene flow among An. nuneztovari s.l. populations from the four localities. The COI network showed a single most common haplotype, type 1 (n = 55, present in all localities, as the likely ancestral haplotype. Analysis of the white gene showed that An. nuneztovari s.l. populations from both departments grouped with haplotypes 19 and 20, which are part of lineage 3 reported previously. The results of the present study suggest that An. nuneztovari s.l. is a single taxon in the area of the present study.

  4. Final classification of Bisgaard taxon 9 as Actinobacillus arthritidis sp nov and recognition of a novel genomospecies for equine strains of Actinobacillus lignieresii

    DEFF Research Database (Denmark)

    Christensen, Henrik; Bisgaard, Magne; Angen, Øystein;

    2002-01-01

    Phenotypic characterization of bacteria from diseased and healthy horses identified 18 isolates as Bisgaard taxon 9 and 11 isolates as Actinobacillus lignieresii. All strains of taxon 9 were alpha-galactosidase- and raffinose-positive and showed variable fermentation of (+)L-arabinose and (-)D-sorbitol....... Strains of A. lignieresii were negative for these characteristics, with the exception of raffinose. Two strains from the (-)D-sorbitol-negative group of taxon 9 showed a 16S rRNA similarity of 99.6%, while 99.5% similarity was found between two strains of the (-)D-sorbitol-positive group. DNA......-DNA hybridization between the two strains representing the (-)D-sorbitol-negative group showed 98% binding, and their closest relationship was to a strain of A. lignieresii (64%). The two strains of the (-)D-sorbitol-positive group showed 83% binding and were related to the (-)D-sorbitol-negative group at a 76% DNA...

  5. Sommerxylon spiralosus from Upper Triassic in southernmost Paraná Basin (Brazil: a new taxon with taxacean affinity

    Directory of Open Access Journals (Sweden)

    Etiene F. Pires

    2004-09-01

    Full Text Available The anatoical description of silici?ed Gymnospermae woods from Upper Triassic sequences of southernmost Paraná Basin (Brazil has allowed the identi?cation of a new taxon: Sommerxylon spiralosus n.gen. et n.sp. Diagnostic parameters, such as heterocellular medulla composed of parenchymatous and sclerenchymatous cells, primary xylem endarch, secondary xylem with dominant uniseriate bordered pits, spiral thickenings in the radial walls of tracheids, medullar rays homocellular, absence of resiniferous canals and axial parenchyma, indicate its relationship with the family Taxaceae, reporting on the first recognition of this group in the Triassic on Southern Pangea. This evidence supports the hypothesis that the Taxaceae at the Mesozoic were not con?ned to the Northern Hemisphere.A descrição anatômica de lenhos silicificados de Gymnospermae em seqüência do Triássico Superior no sul da Bacia do Paraná (Brasil, possibilitou a identificação de um novo taxon: Sommerxylon spiralosus n.gen. et n.sp. Parâmetros diagnósticos tais como medula heterocelular, composta por células parenquimáticas e esclerenquimáticas, xilema primário endarco, xilema secundário com pontoações areoladas unisseriadas dominantes, espessamentos espiralados nas paredes radiais dos traqueídeos, raios lenhosos homocelulares, ausência de canais resiníferos e de parênquima axial, indicam a sua vinculação à família Taxaceae, constituindo-se em reconhecimento inédito da presença deste grupo no Triássico Superior no sul do Pangea. Esta evidência suporta a hipótese de que a família Taxaceae não estava confinada ao Hemisfério Norte durante o Mesozóico.

  6. THE ENERGETIC ENVIRONMENT AND THE DENSE INTERSTELLAR MEDIUM IN ULIRGS

    Directory of Open Access Journals (Sweden)

    O. Vega

    2009-01-01

    Full Text Available We t the near-infrared to radio spectral energy distributions of a sample of 30 luminous and ultra-luminous infrared galaxies with models that include both starburst and AGN components. The aim of the work was to determine important physical parameters for this kind of objects such as the optical depth towards the luminosity source, the star formation rate, the star formation efficiency and the AGN fraction. We found that although about half of our sample have best- t models that include an AGN component, only 30% have an AGN which accounts for more than 10% of the infrared luminosity whereas all have an energetically dominant starburst. Our models also determine the mass of dense molecular gas. Assuming that this mass is that traced by the HCN molecule, we reproduce the observed linear relation between HCN luminosity and infrared luminosity found by Gao & Solomon (2004. However, our derived conversion factor between HCN luminosity and the mass of dense molecular gas is a factor of 2 smaller than that assumed by these authors. Finally, we nd that the star formation efficiency falls as the starburst ages.

  7. The energetic environment and the dense interstellar medium in ULIRGs

    CERN Document Server

    Vega, O; Bressan, A; Granato, G L; Silva, L; Panuzzo, P

    2009-01-01

    We fit the near-infrared to radio spectral energy distributions of a sample of 30 luminous and ultra-luminous infrared galaxies with models that include both starburst and AGN components. The aim of the work was to determine important physical parameters for this kind of objects such as the optical depth towards the luminosity source, the star formation rate, the star formation efficiency and the AGN fraction. We found that although about half of our sample have best-fit models that include an AGN component, only 30 % have an AGN which accounts for more than 10 % of the infrared luminosity whereas all have an energetically dominant starburst. Our models also determine the mass of dense molecular gas. Assuming that this mass is that traced by the HCN molecule, we reproduce the observed linear relation between HCN luminosity and infrared luminosity found by Gao and Solomon (2004). However, our derived conversion factor between HCN luminosity and the mass of dense molecular gas is a factor of 2 smaller than that...

  8. Battery-powered bone drill: caution needed in densely blastic lesions

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Connie Y.; Simeone, F.J.; Huang, Ambrose J. [Massachusetts General Hospital, Division of Musculoskeletal Imaging and Intervention, Department of Radiology, Boston, MA (United States)

    2015-12-15

    Image-guided biopsies play an important role for pathologic diagnosis of bone tumors. Recently, motorized, battery powered bone marrow biopsy devices have been used to biopsy focal bone lesions with high accuracy. We present here two cases of densely blastic metastases where the biopsy sample could not be removed from the needle. These two cases suggest that if the lesion is densely blastic, then the sample should be small (<5 mm) to ensure that the biopsy specimen will not be stuck within the biopsy needle. (orig.)

  9. Dense Output for Strong Stability Preserving Runge–Kutta Methods

    KAUST Repository

    Ketcheson, David I.

    2016-12-10

    We investigate dense output formulae (also known as continuous extensions) for strong stability preserving (SSP) Runge–Kutta methods. We require that the dense output formula also possess the SSP property, ideally under the same step-size restriction as the method itself. A general recipe for first-order SSP dense output formulae for SSP methods is given, and second-order dense output formulae for several optimal SSP methods are developed. It is shown that SSP dense output formulae of order three and higher do not exist, and that in any method possessing a second-order SSP dense output, the coefficient matrix A has a zero row.

  10. Nuevas herramientas para la clasificación taxonómica de los insectos vectores de leishmaniosis: utilidad de los genes mitocondriales

    OpenAIRE

    Eduar E. Bejarano

    2001-01-01

    La controversia en torno a la posición taxonómica de los flebotomineos, debida en parte a dificultades morfológicas, ha evidenciado la necesidad de buscar nuevas herramientas que permitan no sólo establecer una clasificación más acorde con los procesos evolutivos que han experimentado estos insectos, sino también diferenciar los taxones que conforman los complejos de especies. Con la aparición de las técnicas de biología molecular, el estudio del genoma en insectos vectores de enfermedades se...

  11. Colloquium: Nonlinear Collective Interactions in Dense Plasmas

    CERN Document Server

    Shukla, P K

    2010-01-01

    The current understanding of some important collective processes in dense quantum plasmas is presented. After reviewing the basic properties of dense quantum plasmas with degenerate electrons, we present model equations (e.g. the quantum hydrodynamic and effective nonlinear Schr\\"odinger-Poisson equations) that describe collective nonlinear phenomena at nanoscales. The effects of the electron degeneracy arise due to Heisenberg's uncertainty principle and Pauli's exclusion principle for overlapping electron wave functions that result in a nonlinear quantum electron pressure and tunneling/diffusion of electrons through a nonlinear quantum Bohm potential. Since degenerate electrons have $1/2-$spin due to their Fermionic nature, there also appear a spin electron current and a spin force acting on the electrons due to the Bohr magnetization. The present nonlinear equations do not include strong electron correlations and electron-exchange interactions. The quantum effects caused by the electron degeneracy produce n...

  12. Active fluidization in dense glassy systems.

    Science.gov (United States)

    Mandal, Rituparno; Bhuyan, Pranab Jyoti; Rao, Madan; Dasgupta, Chandan

    2016-07-20

    Dense soft glasses show strong collective caging behavior at sufficiently low temperatures. Using molecular dynamics simulations of a model glass former, we show that the incorporation of activity or self-propulsion, f0, can induce cage breaking and fluidization, resulting in the disappearance of the glassy phase beyond a critical f0. The diffusion coefficient crosses over from being strongly to weakly temperature dependent as f0 is increased. In addition, we demonstrate that activity induces a crossover from a fragile to a strong glass and a tendency of active particles to cluster. Our results are of direct relevance to the collective dynamics of dense active colloidal glasses and to recent experiments on tagged particle diffusion in living cells.

  13. Strategies for Dense Optical CDMA Communication Systems

    Institute of Scientific and Technical Information of China (English)

    WANG Yu-bao; LIN Jin-tong

    2005-01-01

    In this paper,we have formulated a strategy that the limited available code sequences in pure Direct-Sequence(DS)or Frequency-Hopping(FH)system can be reused to realize dense optical CDMA:the strategy of novel hybrid DS/FH system.In which,the case that there are n users employing the same FH pattern but different DS code patterns is considered.On the condition that the impact of channel noises is neglected,the upper bound probability of error is evaluated based on the stationary random process theory.The results show that the hybrid system is suitable for Dense Optical CDMA(DOCDMA)communication.Moreover,the problems such as the link-impairment,dispersion of group velocity,etc.in the pure(DS or FH)system can be solved effectively.

  14. The kinetic chemistry of dense interstellar clouds

    Science.gov (United States)

    Graedel, T. E.; Langer, W. D.; Frerking, M. A.

    1982-01-01

    A model of the time-dependent chemistry of dense interstellar clouds is formulated to study the dominant chemical processes in carbon and oxygen isotope fractionation, the formation of nitrogen-containing molecules, and the evolution of product molecules as a function of cloud density and temperature. The abundances of the dominant isotopes of the carbon- and oxygen-bearing molecules are calculated. The chemical abundances are found to be quite sensitive to electron concentration since the electron concentration determines the ratio of H3(+) to He(+), and the electron density is strongly influenced by the metals abundance. For typical metal abundances and for H2 cloud density not less than 10,000 molecules/cu cm, nearly all carbon exists as CO at late cloud ages. At high cloud density, many aspects of the chemistry are strongly time dependent. Finally, model calculations agree well with abundances deduced from observations of molecular line emission in cold dense clouds.

  15. Topological Surface States in Dense Solid Hydrogen.

    Science.gov (United States)

    Naumov, Ivan I; Hemley, Russell J

    2016-11-11

    Metallization of dense hydrogen and associated possible high-temperature superconductivity represents one of the key problems of physics. Recent theoretical studies indicate that before becoming a good metal, compressed solid hydrogen passes through a semimetallic stage. We show that such semimetallic phases predicted to be the most stable at multimegabar (∼300  GPa) pressures are not conventional semimetals: they exhibit topological metallic surface states inside the bulk "direct" gap in the two-dimensional surface Brillouin zone; that is, metallic surfaces may appear even when the bulk of the material remains insulating. Examples include hydrogen in the Cmca-12 and Cmca-4 structures; Pbcn hydrogen also has metallic surface states but they are of a nontopological nature. The results provide predictions for future measurements, including probes of possible surface superconductivity in dense hydrogen.

  16. Highly Dense Isolated Metal Atom Catalytic Sites

    DEFF Research Database (Denmark)

    Chen, Yaxin; Kasama, Takeshi; Huang, Zhiwei

    2015-01-01

    Atomically dispersed noble-metal catalysts with highly dense active sites are promising materials with which to maximise metal efficiency and to enhance catalytic performance; however, their fabrication remains challenging because metal atoms are prone to sintering, especially at a high metal...... loading. A dynamic process of formation of isolated metal atom catalytic sites on the surface of the support, which was achieved starting from silver nanoparticles by using a thermal surface-mediated diffusion method, was observed directly by using in situ electron microscopy and in situ synchrotron X......-ray diffraction. A combination of electron microscopy images with X-ray absorption spectra demonstrated that the silver atoms were anchored on five-fold oxygen-terminated cavities on the surface of the support to form highly dense isolated metal active sites, leading to excellent reactivity in catalytic oxidation...

  17. Accelerating Dense Linear Algebra on the GPU

    DEFF Research Database (Denmark)

    Sørensen, Hans Henrik Brandenborg

    and matrix-vector operations on GPUs. Such operations form the backbone of level 1 and level 2 routines in the Basic Linear Algebra Subroutines (BLAS) library and are therefore of great importance in many scientific applications. The target hardware is the most recent NVIDIA Tesla 20-series (Fermi...... architecture). Most of the techniques I discuss for accelerating dense linear algebra are applicable to memory-bound GPU algorithms in general....

  18. Observations of Plasmons in Warm Dense Matter

    Energy Technology Data Exchange (ETDEWEB)

    Glenzer, S H; Landen, O L; Neumayer, P; Lee, R W; Widmann, K; Pollaine, S W; Wallace, R J; Gregori, G; Holl, A; Bornath, T; Thiele, R; Schwarz, V; Kraeft, W; Redmer, R

    2006-09-05

    We present the first collective x-ray scattering measurements of plasmons in solid-density plasmas. The forward scattering spectra of a laser-produced narrow-band x-ray line from isochorically heated beryllium show that the plasmon frequency is a sensitive measure of the electron density. Dynamic structure calculations that include collisions and detailed balance match the measured plasmon spectrum indicating that this technique will enable new applications to determine the equation of state and compressibility of dense matter.

  19. Splashing onset in dense suspension droplets

    OpenAIRE

    Peters, Ivo; Xu, Qin; Jaeger, Heinrich M.

    2013-01-01

    We investigate the impact of droplets of dense suspensions onto a solid substrate. We show that a global hydrodynamic balance is unable to predict the splash onset and propose to replace it by an energy balance at the level of the particles in the suspension. We experimentally verify that the resulting, particle-based Weber number gives a reliable, particle size and density dependent splash onset criterion. We further show that the same argument also explains why, in bimodal systems, smaller ...

  20. A method for dense packing discovery

    CERN Document Server

    Kallus, Yoav; Gravel, Simon

    2010-01-01

    The problem of packing a system of particles as densely as possible is foundational in the field of discrete geometry and is a powerful model in the material and biological sciences. As packing problems retreat from the reach of solution by analytic constructions, the importance of an efficient numerical method for conducting de novo (from-scratch) searches for dense packings becomes crucial. In this paper, we use the divide and concur framework to develop a general search method for the solution of periodic constraint problems, and we apply it to the discovery of dense periodic packings. An important feature of the method is the integration of the unit cell parameters with the other packing variables in the definition of the configuration space. The method we present led to improvements in the densest-known tetrahedron packing which are reported in [arXiv:0910.5226]. Here, we use the method to reproduce the densest known lattice sphere packings and the best known lattice kissing arrangements in up to 14 and ...

  1. Hybrid-Based Dense Stereo Matching

    Science.gov (United States)

    Chuang, T. Y.; Ting, H. W.; Jaw, J. J.

    2016-06-01

    Stereo matching generating accurate and dense disparity maps is an indispensable technique for 3D exploitation of imagery in the fields of Computer vision and Photogrammetry. Although numerous solutions and advances have been proposed in the literature, occlusions, disparity discontinuities, sparse texture, image distortion, and illumination changes still lead to problematic issues and await better treatment. In this paper, a hybrid-based method based on semi-global matching is presented to tackle the challenges on dense stereo matching. To ease the sensitiveness of SGM cost aggregation towards penalty parameters, a formal way to provide proper penalty estimates is proposed. To this end, the study manipulates a shape-adaptive cross-based matching with an edge constraint to generate an initial disparity map for penalty estimation. Image edges, indicating the potential locations of occlusions as well as disparity discontinuities, are approved by the edge drawing algorithm to ensure the local support regions not to cover significant disparity changes. Besides, an additional penalty parameter 𝑃𝑒 is imposed onto the energy function of SGM cost aggregation to specifically handle edge pixels. Furthermore, the final disparities of edge pixels are found by weighting both values derived from the SGM cost aggregation and the U-SURF matching, providing more reliable estimates at disparity discontinuity areas. Evaluations on Middlebury stereo benchmarks demonstrate satisfactory performance and reveal the potency of the hybrid-based dense stereo matching method.

  2. Dense Visual SLAM with Probabilistic Surfel Map.

    Science.gov (United States)

    Yan, Zhixin; Ye, Mao; Ren, Liu

    2017-11-01

    Visual SLAM is one of the key technologies to align the virtual and real world together in Augmented Reality applications. RGBD dense Visual SLAM approaches have shown their advantages in robustness and accuracy in recent years. However, there are still several challenges such as the inconsistencies in RGBD measurements across multiple frames that could jeopardize the accuracy of both camera trajectory and scene reconstruction. In this paper, we propose a novel map representation called Probabilistic Surfel Map (PSM) for dense visual SLAM. The main idea is to maintain a globally consistent map with both photometric and geometric uncertainties encoded in order to address the inconsistency issue. The key of our PSM is proper modeling and updating of sensor measurement uncertainties, as well as the strategies to apply them for improving both the front-end pose estimation and the back-end optimization. Experimental results on publicly available datasets demonstrate major improvements with our approach over the state-of-the-art methods. Specifically, comparing with σ-DVO, we achieve a 40% reduction in absolute trajectory error and an 18% reduction in relative pose error in visual odometry, as well as an 8.5% reduction in absolute trajectory error in complete SLAM. Moreover, our PSM enables generation of a high quality dense point cloud with comparable accuracy as the state-of-the-art approach.

  3. Dense Correspondences across Scenes and Scales.

    Science.gov (United States)

    Tau, Moria; Hassner, Tal

    2016-05-01

    We seek a practical method for establishing dense correspondences between two images with similar content, but possibly different 3D scenes. One of the challenges in designing such a system is the local scale differences of objects appearing in the two images. Previous methods often considered only few image pixels; matching only pixels for which stable scales may be reliably estimated. Recently, others have considered dense correspondences, but with substantial costs associated with generating, storing and matching scale invariant descriptors. Our work is motivated by the observation that pixels in the image have contexts-the pixels around them-which may be exploited in order to reliably estimate local scales. We make the following contributions. (i) We show that scales estimated in sparse interest points may be propagated to neighboring pixels where this information cannot be reliably determined. Doing so allows scale invariant descriptors to be extracted anywhere in the image. (ii) We explore three means for propagating this information: using the scales at detected interest points, using the underlying image information to guide scale propagation in each image separately, and using both images together. Finally, (iii), we provide extensive qualitative and quantitative results, demonstrating that scale propagation allows for accurate dense correspondences to be obtained even between very different images, with little computational costs beyond those required by existing methods.

  4. Hysteresis losses in a dense superparamagnetic nanoparticle assembly

    Directory of Open Access Journals (Sweden)

    S. A. Gudoshnikov

    2012-03-01

    Full Text Available The hysteresis losses of a dense assembly of magnetite nanoparticles with an average diameter D = 25 nm are measured in the frequency range f = 10 – 200 kHz for magnetic field amplitudes up to H0 = 400 Oe. The low frequency hysteresis loops of the assembly are obtained by means of integration of the electro-motive force signal arising in a small pick-up coil wrapped around a sample which contains 1 – 5 mg of a magnetite powder. It is proved experimentally that the specific absorption rate diminishes approximately 4.5 times when the sample aspect ratio decreases from 11.4 to 1. Theoretical estimate shows that experimentally measured hysteresis loops can be approximately described only by taking into account appreciable contributions of magnetic nanoparticles of both very small, D 30 nm, diameters. Thus the wide particle size distribution has to be assumed.

  5. Physical Cleaning of Lakhra Coal by Dense Medium Separation Method

    Directory of Open Access Journals (Sweden)

    Sikandar Ali Channa

    2015-07-01

    Full Text Available This research is an attempt to upgrade Lakhra Lignite Coal using ?Dense Medium Separation? technique, to make it techno-environmentally acceptable product for different industries. The air-dried samples of ROM (Run of Mine coal were crushed, screened, ground and subjected to initial analysis and specific gravity based sink-float tests. The initial analysis of air-dried samples shows the average values of moisture 19%, volatile matter 22.33%, ash 27.41%, fixed carbon 31.26% and sulphur 4.98%. The investigational results of sink-float analysis indicate that physical cleaning at particle size range from -5.6 to +0.3 mm and 75% clean coal recovery can potentially reduce the ash yield and sulphur content of Lakhra coal up to 41 and 42.4% respectively. This washed coal is techno-environmentally acceptable yield and simultaneously qualifies the quality parameters set by various industries of Pakistan

  6. Generation of dense statistical connectomes from sparse morphological data

    Directory of Open Access Journals (Sweden)

    Robert eEgger

    2014-11-01

    Full Text Available Sensory-evoked signal flow, at cellular and network levels, is primarily determined by the synaptic wiring of the underlying neuronal circuitry. Measurements of synaptic innervation, connection probabilities and subcellular organization of synaptic inputs are thus among the most active fields of research in contemporary neuroscience. Methods to measure these quantities range from electrophysiological recordings over reconstructions of dendrite-axon overlap at light-microscopic levels to dense circuit reconstructions of small volumes at electron-microscopic resolution. However, quantitative and complete measurements at subcellular resolution and mesoscopic scales to obtain all local and long-range synaptic in/outputs for any neuron within an entire brain region are beyond present methodological limits. Here, we present a novel concept, implemented within an interactive software environment called NeuroNet, which allows (i integration of sparsely sampled (subcellular morphological data into an accurate anatomical reference frame of the brain region(s of interest, (ii up-scaling to generate an average dense model of the neuronal circuitry within the respective brain region(s and (iii statistical measurements of synaptic innervation between all neurons within the model. We illustrate our approach by generating a dense average model of the entire rat vibrissal cortex, providing the required anatomical data, and illustrate how to measure synaptic innervation statistically. Comparing our results with data from paired recordings in vitro and in vivo, as well as with reconstructions of synaptic contact sites at light- and electron-microscopic levels, we find that our in silico measurements are in line with previous results.

  7. Testing taxon tenacity of tortoises: evidence for a geographical selection gradient at a secondary contact zone

    Science.gov (United States)

    Edwards, Taylor; Berry, Kristin H.; Inman, Richard D.; Esque, Todd C.; Nussear, Kenneth E.; Jones, Cristina A.; Culver, Melanie

    2015-01-01

    We examined a secondary contact zone between two species of desert tortoise, Gopherus agassizii and G. morafkai. The taxa were isolated from a common ancestor during the formation of the Colorado River (4-8 mya) and are a classic example of allopatric speciation. However, an anomalous population of G. agassizii comes into secondary contact with G. morafkai east of the Colorado River in the Black Mountains of Arizona and provides an opportunity to examine reinforcement of species' boundaries under natural conditions. We sampled 234 tortoises representing G. agassizii in California (n = 103), G. morafkai in Arizona (n = 78), and 53 individuals of undetermined assignment in the contact zone including and surrounding the Black Mountains. We genotyped individuals for 25 STR loci and determined maternal lineage using mtDNA sequence data. We performed multilocus genetic clustering analyses and used multiple statistical methods to detect levels of hybridization. We tested hypotheses about habitat use between G. agassizii and G. morafkai in the region where they co-occur using habitat suitability models. Gopherus agassizii and G. morafkai maintain independent taxonomic identities likely due to ecological niche partitioning, and the maintenance of the hybrid zone is best described by a geographical selection gradient model.

  8. In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii.

    Science.gov (United States)

    Hewson, Ian; Poretsky, Rachel S; Beinart, Roxanne A; White, Angelicque E; Shi, Tuo; Bench, Shellie R; Moisander, Pia H; Paerl, Ryan W; Tripp, H James; Montoya, Joseph P; Moran, Mary Ann; Zehr, Jonathan P

    2009-05-01

    The diazotrophic cyanobacterium Crocosphaera watsonii supplies fixed nitrogen (N) to N-depleted surface waters of the tropical oceans, but the factors that determine its distribution and contribution to global N(2) fixation are not well constrained for natural populations. Despite the heterogeneity of the marine environment, the genome of C. watsonii is highly conserved in nucleotide sequence in contrast to sympatric planktonic cyanobacteria. We applied a whole assemblage shotgun transcript sequencing approach to samples collected from a bloom of C. watsonii observed in the South Pacific to understand the genomic mechanisms that may lead to high population densities. We obtained 999 C. watsonii transcript reads from two metatranscriptomes prepared from mixed assemblage RNA collected in the day and at night. The C. watsonii population had unexpectedly high transcription of hypothetical protein genes (31% of protein-encoding genes) and transposases (12%). Furthermore, genes were expressed that are necessary for living in the oligotrophic ocean, including the nitrogenase cluster and the iron-stress-induced protein A (isiA) that functions to protect photosystem I from high-light-induced damage. C. watsonii transcripts retrieved from metatranscriptomes at other locations in the southwest Pacific Ocean, station ALOHA and the equatorial Atlantic Ocean were similar in composition to those recovered in the enriched population. Quantitative PCR and quantitative reverse transcriptase PCR were used to confirm the high expression of these genes within the bloom, but transcription patterns varied at shallower and deeper horizons. These data represent the first transcript study of a rare individual microorganism in situ and provide insight into the mechanisms of genome diversification and the ecophysiology of natural populations of keystone organisms that are important in global nitrogen cycling.

  9. Comparing Dense Galaxy Cluster Redshift Surveys with Weak Lensing Maps

    CERN Document Server

    Hwang, Ho Seong; Diaferio, Antonaldo; Rines, Kenneth J; Zahid, H Jabran

    2014-01-01

    We use dense redshift surveys of nine galaxy clusters at $z\\sim0.2$ to compare the galaxy distribution in each system with the projected matter distribution from weak lensing. By combining 2087 new MMT/Hectospec redshifts and the data in the literature, we construct spectroscopic samples within the region of weak-lensing maps of high (70--89%) and uniform completeness. With these dense redshift surveys, we construct galaxy number density maps using several galaxy subsamples. The shape of the main cluster concentration in the weak-lensing maps is similar to the global morphology of the number density maps based on cluster members alone, mainly dominated by red members. We cross correlate the galaxy number density maps with the weak-lensing maps. The cross correlation signal when we include foreground and background galaxies at 0.5$z_{\\rm cl}$20% for A383, A689 and A750). The fractional excess in the cross correlation signal including foreground and background structures could be a useful proxy for assessing th...

  10. SIFT flow: dense correspondence across scenes and its applications.

    Science.gov (United States)

    Liu, Ce; Yuen, Jenny; Torralba, Antonio

    2011-05-01

    While image alignment has been studied in different areas of computer vision for decades, aligning images depicting different scenes remains a challenging problem. Analogous to optical flow, where an image is aligned to its temporally adjacent frame, we propose SIFT flow, a method to align an image to its nearest neighbors in a large image corpus containing a variety of scenes. The SIFT flow algorithm consists of matching densely sampled, pixelwise SIFT features between two images while preserving spatial discontinuities. The SIFT features allow robust matching across different scene/object appearances, whereas the discontinuity-preserving spatial model allows matching of objects located at different parts of the scene. Experiments show that the proposed approach robustly aligns complex scene pairs containing significant spatial differences. Based on SIFT flow, we propose an alignment-based large database framework for image analysis and synthesis, where image information is transferred from the nearest neighbors to a query image according to the dense scene correspondence. This framework is demonstrated through concrete applications such as motion field prediction from a single image, motion synthesis via object transfer, satellite image registration, and face recognition.

  11. [Pasteurella] caballi infection not limited to horses - a closer look at taxon 42 of Bisgaard

    DEFF Research Database (Denmark)

    Christensen, Henrik; Hommez, J.; Olsen, John Elmerdahl

    2006-01-01

    Aim To investigate if taxon 42 of Bisgaard isolated from pigs represents genuine [Pasteurella] caballi which has previously only been isolated from horses. Methods and Results A total of 15 field isolates from horses and pigs from 5 different countries representing three continents were to subjec...

  12. Prácticas de manejo, usos y valoración de taxones de Cactaceae en el noroeste de Córdoba, Argentina

    Directory of Open Access Journals (Sweden)

    Julieta Karina Torrico Chalabe

    2015-07-01

    Full Text Available En el noroeste de Córdoba, los taxones de Cactaceae representan un recurso importante que contribuye a la subsistencia y a la vida cotidiana de los pobladores locales, siendo el invierno particularmente duro para la vida de las personas y la producción de animales, y es casi imposible hacer cultivos anuales en secano. Se planteó como objetivo la recuperación y sistematización del conocimiento botánico local, poniendo énfasis en la diversidad de taxones utilizados, las prácticas de manejo asociadas y la valoración de estas plantas particulares por parte de los pobladores del área de estudio. Se realizó posteriormente un listado de 13 taxones nativos y naturalizados, con sus nombres vernáculos y sus usos. Se registraron 12 tipos de usos y 6 prácticas de manejo. Por último, se evidenció que los pobladores valoran a las cactáceas como importantes o muy importantes por su utilidad como recurso de subsistencia (forrajero y alimentario y por su valor ornamental (estético y económico. Así, el conocimiento botánico de algunos pobladores sobre los taxones estudiados representa, para un futuro, información útil para toda la población y para los encargados de planes de manejo y conservación de ambientes áridos.

  13. Temperature relaxation in dense plasma mixtures

    Science.gov (United States)

    Faussurier, Gérald; Blancard, Christophe

    2016-09-01

    We present a model to calculate temperature-relaxation rates in dense plasma mixtures. The electron-ion relaxation rates are calculated using an average-atom model and the ion-ion relaxation rates by the Landau-Spitzer approach. This method allows the study of the temperature relaxation in many-temperature electron-ion and ion-ion systems such as those encountered in inertial confinement fusion simulations. It is of interest for general nonequilibrium thermodynamics dealing with energy flows between various systems and should find broad use in present high energy density experiments.

  14. Leeuwpan fine coal dense medium plant

    CSIR Research Space (South Africa)

    Lundt, M

    2010-11-01

    Full Text Available availability to treat the higher grade coal (the bottom layer of coal) from the no. 2 Seam for a local and export metallurgical market. Following the path of evolution, in 2007, Leeuwpan commissioned the first double stage ultra-fines dense medium cyclone... plant in the coal industry, to form part of its overall DMS plant. It replaced the spirals to treat the -1 mm material. Spirals are still the most commonly and accepted method used by the industry, but it seems as if the pioneering cyclone process...

  15. Resolving Ultrafast Heating of Dense Cryogenic Hydrogen

    Science.gov (United States)

    Zastrau, U.; Sperling, P.; Harmand, M.; Becker, A.; Bornath, T.; Bredow, R.; Dziarzhytski, S.; Fennel, T.; Fletcher, L. B.; Förster, E.; Göde, S.; Gregori, G.; Hilbert, V.; Hochhaus, D.; Holst, B.; Laarmann, T.; Lee, H. J.; Ma, T.; Mithen, J. P.; Mitzner, R.; Murphy, C. D.; Nakatsutsumi, M.; Neumayer, P.; Przystawik, A.; Roling, S.; Schulz, M.; Siemer, B.; Skruszewicz, S.; Tiggesbäumker, J.; Toleikis, S.; Tschentscher, T.; White, T.; Wöstmann, M.; Zacharias, H.; Döppner, T.; Glenzer, S. H.; Redmer, R.

    2014-03-01

    We report on the dynamics of ultrafast heating in cryogenic hydrogen initiated by a ≲300 fs, 92 eV free electron laser x-ray burst. The rise of the x-ray scattering amplitude from a second x-ray pulse probes the transition from dense cryogenic molecular hydrogen to a nearly uncorrelated plasmalike structure, indicating an electron-ion equilibration time of ˜0.9 ps. The rise time agrees with radiation hydrodynamics simulations based on a conductivity model for partially ionized plasma that is validated by two-temperature density-functional theory.

  16. Oscillating propagators in heavy-dense QCD

    CERN Document Server

    Akerlund, Oscar; Rindlisbacher, Tobias

    2016-10-11

    Using Monte Carlo simulations and extended mean field theory calculations we show that the $3$-dimensional $\\mathbb{Z}_3$ spin model with complex external fields has non-monotonic correlators in some regions of its parameter space. This model serves as a proxy for heavy-dense QCD in $(3+1)$ dimensions. Non-monotonic correlators are intrinsically related to a complex mass spectrum and a liquid-like (or crystalline) behavior. A liquid phase could have implications for heavy-ion experiments, where it could leave detectable signals in the spatial correlations of baryons.

  17. Interference Alignment in Dense Wireless Networks

    CERN Document Server

    Niesen, Urs

    2009-01-01

    We consider arbitrary dense wireless networks, in which $n$ nodes are placed in an arbitrary (deterministic) manner on a square region of unit area and communicate with each other over Gaussian fading channels. We provide inner and outer bounds for the $n\\times n$-dimensional unicast and the $n\\times 2^n$-dimensional multicast capacity regions of such a wireless network. These inner and outer bounds differ only by a factor $O(\\log(n))$, yielding a fairly tight scaling characterization of the entire regions. The communication schemes achieving the inner bounds use interference alignment as a central technique and are surprisingly simple.

  18. Phase transitions in dense 2-colour QCD

    CERN Document Server

    Boz, Tamer; Fister, Leonard; Skullerud, Jon-Ivar

    2013-01-01

    We investigate 2-colour QCD with 2 flavours of Wilson fermion at nonzero temperature T and quark chemical potential mu, with a pion mass of 700 MeV (m_pi/m_rho=0.8). From temperature scans at fixed mu we find that the critical temperature for the superfluid to normal transition depends only very weakly on mu above the onset chemical potential, while the deconfinement crossover temperature is clearly decreasing with mu. We also present results for the Landau-gauge gluon propagator in the hot and dense medium.

  19. Flavour Oscillations in Dense Baryonic Matter

    Science.gov (United States)

    Filip, Peter

    2017-01-01

    We suggest that fast neutral meson oscillations may occur in a dense baryonic matter, which can influence the balance of s/¯s quarks in the nucleus-nucleus and proton-nucleus interactions, if primordial multiplicities of neutral K 0, mesons are sufficiently asymmetrical. The phenomenon can occur even if CP symmetry is fully conserved, and it may be responsible for the enhanced sub-threshold production of multi-strange hyperons observed in the low-energy A+A and p+A interactions.

  20. Gravity-driven dense granular flows

    Energy Technology Data Exchange (ETDEWEB)

    ERTAS,DENIZ; GREST,GARY S.; HALSEY,THOMAS C.; DEVINE,DOV; SILBERT,LEONARDO E.

    2000-03-29

    The authors report and analyze the results of numerical studies of dense granular flows in two and three dimensions, using both linear damped springs and Hertzian force laws between particles. Chute flow generically produces a constant density profile that satisfies scaling relations suggestive of a Bagnold grain inertia regime. The type for force law has little impact on the behavior of the system. Failure is not initiated at the surface, consistent with the absence of surface flows and different principal stress directions at vs. below the surface.

  1. Small dense low density lipoprotein cholesterol and coronary heart disease: results from the Framingham Offspring Study

    Science.gov (United States)

    We sought to establish reference values for a new direct assay for small dense LDL cholesterol (sdLDL-C) and to measure sdLDL-C concentrations in patients with established coronary heart disease (CHD) vs controls. Direct LDL-C and sdLDL-C were measured in samples from 3188 male and female participan...

  2. Taxon-specific metagenomics of Trichoderma reveals a narrow community of opportunistic species that regulate each other’s development

    Science.gov (United States)

    Friedl, Martina A.

    2012-01-01

    In this paper, we report on the in situ diversity of the mycotrophic fungus Trichoderma (teleomorph Hypocrea, Ascomycota, Dikarya) revealed by a taxon-specific metagenomic approach. We designed a set of genus-specific internal transcribed spacer (ITS)1 and ITS2 rRNA primers and constructed a clone library containing 411 molecular operational taxonomic units (MOTUs). The overall species composition in the soil of the two distinct ecosystems in the Danube floodplain consisted of 15 known species and two potentially novel taxa. The latter taxa accounted for only 1.5 % of all MOTUs, suggesting that almost no hidden or uncultivable Hypocrea/Trichoderma species are present at least in these temperate forest soils. The species were unevenly distributed in vertical soil profiles although no universal factors controlling the distribution of all of them (chemical soil properties, vegetation type and affinity to rhizosphere) were revealed. In vitro experiments simulating infrageneric interactions between the pairs of species that were detected in the same soil horizon showed a broad spectrum of reactions from very strong competition over neutral coexistence to the pronounced synergism. Our data suggest that only a relatively small portion of Hypocrea/Trichoderma species is adapted to soil as a habitat and that the interaction between these species should be considered in a screening for Hypocrea/Trichoderma as an agent(s) of biological control of pests. PMID:22075025

  3. Estudos taxonômicos em Gloxinieae (Gesneriaceae - notas nomenclaturais Taxonomic studies on Gloxinieae (Gesneriaceae - nomenclatural notes

    Directory of Open Access Journals (Sweden)

    Andréa Onofre de Araujo

    2012-12-01

    Full Text Available Gloxinia L'Hér. foi um dos gêneros cuja delimitação foi mais modificada em decorrência da reorganização da tribo Gloxinieae nas últimas décadas. Como parte dos estudos taxonômicos no gênero, são designados 15 lectótipos, indicados seis nomes ilegítimos supérfluos, e proposta uma nova combinação neste trabalho; são incluídos, também, comentários sobre três espécies com identidade incerta.Gloxinia L'Her. is a genus that has undergone major changes since the reorganization of the tribe Gloxinieae in the last few decades. We here designate 15 lectotypes, indicate six illegitimate superfluous names, and propose one new combination for this group; comments about three species with uncertain identities are also included.

  4. A multi-taxon approach reveals the effect of management intensity on biodiversity in Alpine larch grasslands.

    Science.gov (United States)

    Nascimbene, Juri; Fontana, Veronika; Spitale, Daniel

    2014-07-15

    In the Alps, larch grasslands form one of the most pleasing aspects of the landscape. However, their effectiveness in contributing to biodiversity conservation may depend on the intensity of their management. We used a multi-taxon approach to evaluate the effects of the intensification of management practices and those of abandonment on the biodiversity of the main autotrophic organisms hosted in this habitat, including vascular plants, bryophytes, and lichens. The study was carried out in the eastern part of South Tyrol, in the Italian Alps, where the diversity patterns of these three organismal groups were compared among intensively managed, extensively managed, and abandoned stands. The management intensity was found to strongly influence the biodiversity of the organisms, with a general pattern indicating the best conditions in extensively managed stands. Both abandonment and management intensification were detrimental to biodiversity through different mechanisms that led to species loss or to major shifts in species composition. However, the most negative effects were related to management intensification, mainly due to the high nitrogen supply, providing evidence for the increasing impact of eutrophication on Alpine environments.

  5. Dispersal and diversity in the earliest North American sauropodomorph dinosaurs, with a description of a new taxon.

    Science.gov (United States)

    Rowe, Timothy B; Sues, Hans-Dieter; Reisz, Robert R

    2011-04-07

    Sauropodomorph dinosaurs originated in the Southern Hemisphere in the Middle or Late Triassic and are commonly portrayed as spreading rapidly to all corners of Pangaea as part of a uniform Late Triassic to Early Jurassic cosmopolitan dinosaur fauna. Under this model, dispersal allegedly inhibited dinosaurian diversification, while vicariance and local extinction enhanced it. However, apomorphy-based analyses of the known fossil record indicate that sauropodomorphs were absent in North America until the Early Jurassic, reframing the temporal context of their arrival. We describe a new taxon from the Kayenta Formation of Arizona that comprises the third diagnosable sauropodomorph from the Early Jurassic of North America. We analysed its relationships to test whether sauropodomorphs reached North America in a single sweepstakes event or in separate dispersals. Our finding of separate arrivals by all three taxa suggests dispersal as a chief factor in dinosaurian diversification during at least the early Mesozoic. It questions whether a 'cosmopolitan' dinosaur fauna ever existed, and corroborates that vicariance, extinction and dispersal did not operate uniformly in time or under uniform conditions during the Mesozoic. Their relative importance is best measured in narrow time slices and circumscribed geographical regions.

  6. Consideraciones morfológicas y taxonómicas sobre Ischnochiton (Ischnochiton rissoi (Payraudeau, 1826 (Mollusca, Polyplacophora

    Directory of Open Access Journals (Sweden)

    García García, F. J.

    1999-12-01

    Full Text Available The morphological variability of Ischnochiton (Ischnochiton rissoi (Payraudeau, 1826 has produced taxonomic discrepancies. In this paper, besides a taxonomic revision, the morphology of valves, perinotum and radula of several specimens of I. (I. rissoi is studied using Scanning Electron Microscopy. Although a notable morphological variability is present in this species, however, some common features identify all the varieties as an only taxon.La amplia variabilidad de ornamentación de Ischnochiton (Ischnochiton rissoi (Payraudeau, 1826 ha determinado que ejemplares de esta especie se hayan descrito como especies diferentes. En este artículo, además de revisar y discutir las diversas opiniones existentes, se ha realizado un estudio con microscopía electrónica de barrido de numerosos ejemplares y se ha observado la gran heterogeneidad de I. (I. rissoi en relación al tipo de ornamentación de la concha y del perinoto, aunque se han podido determinar ciertos caracteres comunes que permiten identificarlos como pertenecientes a una única especie.

  7. Murciélagos (Chiroptera: Mammalia del Parque Nacional Yurubí, Venezuela: listado taxonómico y estudio comunitario

    Directory of Open Access Journals (Sweden)

    Mariana Delgado-Jaramillo

    2011-12-01

    Full Text Available Los murciélagos constituyen el grupo de mamíferos más diversificado en la región neotropical y representan un componente clave en la dinámica de muchos ecosistemas terrestres. En este trabajo se describen los resultados de un estudio sobre la quiropterofauna del Parque Nacional Yurubí (ubicado en la zona montañosa del norte de Venezuela, se incluye un listado taxonómico y la caracterización de algunos atributos comunitarios en ambientes predominantemente boscosos. Los datos evaluados fueron obtenidos mediante la revisión de colecciones zoológicas y muestreos diversificados realizados entre febrero y julio del 2009, en un gradiente altitudinal (100-1 500m, que integra a tres unidades ecológicas: bosque semideciduo, bosque siempreverde y selva nublada. Se registraron 64 especies agrupadas en cinco familias, lo que constituye el 63% de los murciélagos conocidos en la Cordillera de la Costa. La familia Phyllostomidae fue dominante (42 especies; 66% del total, seguida por Vespertilionidae, Molossidae, Emballonuridae y Mormoopidae. La comunidad presente a baja elevación fue la más diversificada en términos taxonómicos, mientras que la del piso superior evidenció el menor grado de diversificación. Se identificaron 11 categorías tróficas, con dominancia de los insectívoros en cuanto a la riqueza taxonómica y de los frugívoros en lo que respecta a la abundancia. Nuestros resultados permiten inferir, en un contexto general, que los ecosistemas boscosos del área de estudio muestran un buen estado de conservación, en virtud de la presencia de una proporción relativamente alta de especies pertenecientes a la subfamilia Phyllostominae, cuyos componentes han sido considerados por otros autores como indicadores del grado de conservación de hábitats boscosos primarios, así como la presencia de otras especies con prioridades de conservación. Todos estos aspectos, le confieren a esta área protegida un alto valor proteccionista, en

  8. Predicting diffusivities in dense fluid mixtures

    Directory of Open Access Journals (Sweden)

    C. DARIVA

    1999-09-01

    Full Text Available In this work the Enskog solution of the Boltzmann equation, as corrected by Speedy, together with the Weeks-Chandler-Andersen (WCA perturbation theory of liquids is employed in correlating and predicting self-diffusivities of dense fluids. Afterwards this theory is used to estimate mutual diffusion coefficients of solutes at infinite dilution in sub and supercritical solvents. We have also investigated the behavior of Fick diffusion coefficients in the proximity of a binary vapor-liquid critical point since this subject is of great interest for extraction purposes. The approach presented here, which makes use of a density and temperature dependent hard-sphere diameter, is shown to be excellent for predicting diffusivities in dense pure fluids and fluid mixtures. The calculations involved highly nonideal mixtures as well as systems with high molecular asymmetry. The predicted diffusivities are in good agreement with the experimental data for the pure and binary systems. The methodology proposed here makes only use of pure component information and density of mixtures. The simple algebraic relations are proposed without any binary adjustable parameters and can be readily used for estimating diffusivities in multicomponent mixtures.

  9. The symmetry energy in cold dense matter

    CERN Document Server

    Jeong, Kie Sang

    2015-01-01

    We calculate the symmetry energy in cold dense matter both in the normal quark phase and in the 2-color superconductor (2SC) phase. For the normal phase, the thermodynamic potential is calculated by using hard dense loop (HDL) resummation to leading order, where the dominant contribution comes from the longitudinal gluon rest mass. The effect of gluonic interaction to the symmetry energy, obtained from the thermodynamic potential, was found to be small. In the 2SC phase, the non-perturbative BCS paring gives enhanced symmetry energy as the gapped states are forced to be in the common Fermi sea reducing the number of available quarks that can contribute to the asymmetry. We used high density effective field theory to estimate the contribution of gluon interaction to the symmetry energy. Among the gluon rest masses in 2SC phase, only the Meissner mass has iso-spin dependence although the magnitude is much smaller than the Debye mass. As the iso-spin dependence of gluon rest masses is even smaller than the case ...

  10. Symmetry energy in cold dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Kie Sang, E-mail: k.s.jeong@yonsei.ac.kr; Lee, Su Houng, E-mail: suhoung@yonsei.ac.kr

    2016-01-15

    We calculate the symmetry energy in cold dense matter both in the normal quark phase and in the 2-color superconductor (2SC) phase. For the normal phase, the thermodynamic potential is calculated by using hard dense loop (HDL) resummation to leading order, where the dominant contribution comes from the longitudinal gluon rest mass. The effect of gluonic interaction on the symmetry energy, obtained from the thermodynamic potential, was found to be small. In the 2SC phase, the non-perturbative BCS paring gives enhanced symmetry energy as the gapped states are forced to be in the common Fermi sea reducing the number of available quarks that can contribute to the asymmetry. We used high density effective field theory to estimate the contribution of gluon interaction to the symmetry energy. Among the gluon rest masses in 2SC phase, only the Meissner mass has iso-spin dependence although the magnitude is much smaller than the Debye mass. As the iso-spin dependence of gluon rest masses is even smaller than the case in the normal phase, we expect that the contribution of gluonic interaction to the symmetry energy in the 2SC phase will be minimal. The different value of symmetry energy in each phase will lead to different prediction for the particle yields in heavy ion collision experiment.

  11. Redesigning Triangular Dense Matrix Computations on GPUs

    KAUST Repository

    Charara, Ali

    2016-08-09

    A new implementation of the triangular matrix-matrix multiplication (TRMM) and the triangular solve (TRSM) kernels are described on GPU hardware accelerators. Although part of the Level 3 BLAS family, these highly computationally intensive kernels fail to achieve the percentage of the theoretical peak performance on GPUs that one would expect when running kernels with similar surface-to-volume ratio on hardware accelerators, i.e., the standard matrix-matrix multiplication (GEMM). The authors propose adopting a recursive formulation, which enriches the TRMM and TRSM inner structures with GEMM calls and, therefore, reduces memory traffic while increasing the level of concurrency. The new implementation enables efficient use of the GPU memory hierarchy and mitigates the latency overhead, to run at the speed of the higher cache levels. Performance comparisons show up to eightfold and twofold speedups for large dense matrix sizes, against the existing state-of-the-art TRMM and TRSM implementations from NVIDIA cuBLAS, respectively, across various GPU generations. Once integrated into high-level Cholesky-based dense linear algebra algorithms, the performance impact on the overall applications demonstrates up to fourfold and twofold speedups, against the equivalent native implementations, linked with cuBLAS TRMM and TRSM kernels, respectively. The new TRMM/TRSM kernel implementations are part of the open-source KBLAS software library (http://ecrc.kaust.edu.sa/Pages/Res-kblas.aspx) and are lined up for integration into the NVIDIA cuBLAS library in the upcoming v8.0 release.

  12. Nucleosynthesis in Hot and Dense Media

    CERN Document Server

    Masood, Samina S

    2014-01-01

    We study the finite temperature and density effects on beta decay rates to compute their contributions to nucleosynthesis. QED type corrections to beta decay from the hot and dense background are estimated in terms of the statistical corrections to the self-mass of an electron. For this purpose, we re-examine the hot and dense background contributions to the electron mass and compute its effect to the beta decay rate, helium yield, energy density of the universe as well as the change in neutrino temperature from the first order contribution to the self-mass of electrons during these processes. We explicitly show that the thermal contribution to the helium abundance at T = m of a cooling universe 0.045 % is higher than the corresponding contribution to helium abundance of a heating universe 0.031% due to the existence of hot fermions before the beginning of nucleosynthesis and their absence after the nucleosynthesis, in the early universe. Thermal contribution to helium abundance was a simple quadratic functio...

  13. Compton scattering measurements from dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Glenzer, S H; Neumayer, P; Doeppner, T; Landen, L; Lee, R W; Wallace, R; Weber, S; Lee, H J; Kritcher, A L; Falcone, R; Regan, S P; Sawada, H; Meyerhofer, D D; Gregori, G; Fortmann, C; Schwarz, V; Redmer, R

    2007-10-02

    Compton scattering has been developed for accurate measurements of densities and temperatures in dense plasmas. One future challenge is the application of this technique to characterize compressed matter on the National Ignition Facility where hydrogen and beryllium will approach extremely dense states of matter of up to 1000 g/cc. In this regime, the density, compressibility, and capsule fuel adiabat may be directly measured from the Compton scattered spectrum of a high-energy x-ray line source. Specifically, the scattered spectra directly reflect the electron velocity distribution. In non-degenerate plasmas, the width provides an accurate measure of the electron temperatures, while in partially Fermi degenerate systems that occur in laser-compressed matter it provides the Fermi energy and hence the electron density. Both of these regimes have been accessed in experiments at the Omega laser by employing isochorically heated solid-density beryllium and moderately compressed beryllium foil targets. In the latter experiment, compressions by a factor of 3 at pressures of 40 Mbar have been measured in excellent agreement with radiation hydrodynamic modeling.

  14. Compton scattering measurements from dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Glenzer, S H; Neumayer, P; Doeppner, T; Landen, O L; Lee, R W; Wallace, R J; Weber, S [Lawrence Livermore National Laboratory, Livermore, CA (United States); Lee, H J; Kritcher, A L; Falcone, R [University of California Berkeley, Berkeley, CA 94709 (United States); Regan, S P; Sawada, H; Meyerhofer, D D [Laboratory for Laser Energetics, Rochester, NY (United States); Gregori, G [Clarendon Laboratory, University of Oxford, Oxford OX1 3PU (United Kingdom); Fortmann, C; Schwarz, V; Redmer, R [Institut fuer Physik, Universitaet Rostock, D-18051 Rostock (Germany)], E-mail: glenzer1@llnl.gov

    2008-05-15

    Compton scattering techniques have been developed for accurate measurements of densities and temperatures in dense plasmas. One future challenge is the application of this technique to characterize compressed matter on the National Ignition Facility where hydrogen and beryllium will approach extremely dense states of matter of up to 1000 g/cc. In this regime, the density, compressibility, and capsule fuel adiabat may be directly measured from the Compton scattered spectrum of a high-energy x-ray line source. Specifically, the scattered spectra directly reflect the electron velocity distribution. In non-degenerate plasmas, the width provides an accurate measure of the electron temperatures, while in partially Fermi degenerate systems that occur in laser-compressed matter it provides the Fermi energy and hence the electron density. Both of these regimes have been accessed in experiments at the Omega laser by employing isochorically heated solid-density beryllium and moderately compressed beryllium foil targets. In the latter experiment, compressions by a factor of 3 at pressures of 40 Mbar have been measured in excellent agreement with radiation hydrodynamic modeling.

  15. Probing the Physical Structures of Dense Filaments

    Science.gov (United States)

    Li, Di

    2015-08-01

    Filament is a common feature in cosmological structures of various scales, ranging from dark matter cosmic web, galaxy clusters, inter-galactic gas flows, to Galactic ISM clouds. Even within cold dense molecular cores, filaments have been detected. Theories and simulations with (or without) different combination of physical principles, including gravity, thermal balance, turbulence, and magnetic field, can reproduce intriguing images of filaments. The ubiquity of filaments and the similarity in simulated ones make physical parameters, beyond dust column density, a necessity for understanding filament evolution. I report three projects attempting to measure physical parameters of filaments. We derive the volume density of a dense Taurus filament based on several cyanoacetylene transitions observed by GBT and ART. We measure the gas temperature of the OMC 2-3 filament based on combined GBT+VLA ammonia images. We also measured the sub-millimeter polarization vectors along OMC3. These filaments were found to be likely a cylinder-type structure, without dynamic heating, and likely accreting mass along the magnetic field lines.

  16. Wireless Fractal Ultra-Dense Cellular Networks.

    Science.gov (United States)

    Hao, Yixue; Chen, Min; Hu, Long; Song, Jeungeun; Volk, Mojca; Humar, Iztok

    2017-04-12

    With the ever-growing number of mobile devices, there is an explosive expansion in mobile data services. This represents a challenge for the traditional cellular network architecture to cope with the massive wireless traffic generated by mobile media applications. To meet this challenge, research is currently focused on the introduction of a small cell base station (BS) due to its low transmit power consumption and flexibility of deployment. However, due to a complex deployment environment and low transmit power of small cell BSs, the coverage boundary of small cell BSs will not have a traditional regular shape. Therefore, in this paper, we discuss the coverage boundary of an ultra-dense small cell network and give its main features: aeolotropy of path loss fading and fractal coverage boundary. Simple performance analysis is given, including coverage probability and transmission rate, etc., based on stochastic geometry theory and fractal theory. Finally, we present an application scene and discuss challenges in the ultra-dense small cell network.

  17. Quantum molecular dynamics simulations of dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Collins, L.; Kress, J.; Troullier, N.; Lenosky, T.; Kwon, I. [Los Alamos National Lab., Albuquerque, NM (United States)

    1997-12-31

    The authors have developed a quantum molecular dynamics (QMD) simulation method for investigating the properties of dense matter in a variety of environments. The technique treats a periodically-replicated reference cell containing N atoms in which the nuclei move according to the classical equations-of-motion. The interatomic forces are generated from the quantum mechanical interactions of the (between?) electrons and nuclei. To generate these forces, the authors employ several methods of varying sophistication from the tight-binding (TB) to elaborate density functional (DF) schemes. In the latter case, lengthy simulations on the order of 200 atoms are routinely performed, while for the TB, which requires no self-consistency, upwards to 1000 atoms are systematically treated. The QMD method has been applied to a variety cases: (1) fluid/plasma Hydrogen from liquid density to 20 times volume-compressed for temperatures of a thousand to a million degrees Kelvin; (2) isotopic hydrogenic mixtures, (3) liquid metals (Li, Na, K); (4) impurities such as Argon in dense hydrogen plasmas; and (5) metal/insulator transitions in rare gas systems (Ar,Kr) under high compressions. The advent of parallel versions of the methods, especially for fast eigensolvers, presage LDA simulations in the range of 500--1000 atoms and TB runs for tens of thousands of particles. This leap should allow treatment of shock chemistry as well as large-scale mixtures of species in highly transient environments.

  18. Solids flow rate measurement in dense slurries

    Energy Technology Data Exchange (ETDEWEB)

    Porges, K.G.; Doss, E.D.

    1993-09-01

    Accurate and rapid flow rate measurement of solids in dense slurries remains an unsolved technical problem, with important industrial applications in chemical processing plants and long-distance solids conveyance. In a hostile two-phase medium, such a measurement calls for two independent parameter determinations, both by non-intrusive means. Typically, dense slurries tend to flow in laminar, non-Newtonian mode, eliminating most conventional means that usually rely on calibration (which becomes more difficult and costly for high pressure and temperature media). These issues are reviewed, and specific solutions are recommended in this report. Detailed calculations that lead to improved measuring device designs are presented for both bulk density and average velocity measurements. Cross-correlation, chosen here for the latter task, has long been too inaccurate for practical applications. The cause and the cure of this deficiency are discussed using theory-supported modeling. Fluid Mechanics are used to develop the velocity profiles of laminar non-Newtonian flow in a rectangular duct. This geometry uniquely allows the design of highly accurate `capacitive` devices and also lends itself to gamma transmission densitometry on an absolute basis. An absolute readout, though of less accuracy, is also available from a capacitive densitometer and a pair of capacitive sensors yields signals suitable for cross-correlation velocity measurement.

  19. Subtle Monte Carlo Updates in Dense Molecular Systems

    DEFF Research Database (Denmark)

    Bottaro, Sandro; Boomsma, Wouter; Johansson, Kristoffer E.;

    2012-01-01

    Although Markov chain Monte Carlo (MC) simulation is a potentially powerful approach for exploring conformational space, it has been unable to compete with molecular dynamics (MD) in the analysis of high density structural states, such as the native state of globular proteins. Here, we introduce...... as correlations in a multivariate Gaussian distribution. We demonstrate that our method reproduces structural variation in proteins with greater efficiency than current state-of-the-art Monte Carlo methods and has real-time simulation performance on par with molecular dynamics simulations. The presented results...... a kinetic algorithm, CRISP, that greatly enhances the sampling efficiency in all-atom MC simulations of dense systems. The algorithm is based on an exact analytical solution to the classic chain-closure problem, making it possible to express the interdependencies among degrees of freedom in the molecule...

  20. Fast, Dense Low Cost Scintillator for Nuclear Physics

    Energy Technology Data Exchange (ETDEWEB)

    Woody, Craig

    2009-07-31

    We have studied the morphology, transparency, and optical properties of SrHfO{sub 3}:Ce ceramics. Ceramics can be made transparent by carefully controlling the stoichiometry of the precursor powders. When fully dense, transparent samples can be obtained. Ceramics with a composition close to stoichiometry (Sr:Hf ~ 1) appear to show good transparency and a reasonable light yield several times that of BGO. The contact and distance transparency of ceramics hot-pressed at about 1450ºC is very good, but deteriorates at increasingly higher hot-press temperatures. If these ceramics can be produced in large quantities and sizes, at low cost, they may be of considerable interest for PET and CT.

  1. Structured sublinear compressive sensing via dense belief propagation

    CERN Document Server

    Dai, Wei; Pham, Hoa Vin

    2011-01-01

    Compressive sensing (CS) is a sampling technique designed for reducing the complexity of sparse data acquisition. One of the major obstacles for practical deployment of CS techniques is the signal reconstruction time and the high storage cost of random sensing matrices. We propose a new structured compressive sensing scheme, based on codes of graphs, that allows for a joint design of structured sensing matrices and logarithmic-complexity reconstruction algorithms. The compressive sensing matrices can be shown to offer asymptotically optimal performance when used in combination with Orthogonal Matching Pursuit (OMP) methods. For more elaborate greedy reconstruction schemes, we propose a new family of dense list decoding belief propagation algorithms, as well as reinforced- and multiple-basis belief propagation algorithms. Our simulation results indicate that reinforced BP CS schemes offer very good complexity-performance tradeoffs for very sparse signal vectors.

  2. Decay of Langmuir wave in dense plasmas and warm dense matter

    CERN Document Server

    Son, S; Moon, Sung Joon

    2010-01-01

    The decays of the Langmuir waves in dense plasmas are computed using the dielectric function theory widely used in the solid state physics. Four cases are considered: a classical plasma, a Maxwellian plasma, a degenerate quantum plasma, and a partially degenerate plasma. The result is considerably different from the conventional Landau damping theory.

  3. Image Sampling with Quasicrystals

    CERN Document Server

    Grundland, Mark; Masakova, Zuzana; Dodgson, Neil A; 10.3842/SIGMA.2009.075

    2009-01-01

    We investigate the use of quasicrystals in image sampling. Quasicrystals produce space-filling, non-periodic point sets that are uniformly discrete and relatively dense, thereby ensuring the sample sites are evenly spread out throughout the sampled image. Their self-similar structure can be attractive for creating sampling patterns endowed with a decorative symmetry. We present a brief general overview of the algebraic theory of cut-and-project quasicrystals based on the geometry of the golden ratio. To assess the practical utility of quasicrystal sampling, we evaluate the visual effects of a variety of non-adaptive image sampling strategies on photorealistic image reconstruction and non-photorealistic image rendering used in multiresolution image representations. For computer visualization of point sets used in image sampling, we introduce a mosaic rendering technique.

  4. Image Sampling with Quasicrystals

    Directory of Open Access Journals (Sweden)

    Mark Grundland

    2009-07-01

    Full Text Available We investigate the use of quasicrystals in image sampling. Quasicrystals produce space-filling, non-periodic point sets that are uniformly discrete and relatively dense, thereby ensuring the sample sites are evenly spread out throughout the sampled image. Their self-similar structure can be attractive for creating sampling patterns endowed with a decorative symmetry. We present a brief general overview of the algebraic theory of cut-and-project quasicrystals based on the geometry of the golden ratio. To assess the practical utility of quasicrystal sampling, we evaluate the visual effects of a variety of non-adaptive image sampling strategies on photorealistic image reconstruction and non-photorealistic image rendering used in multiresolution image representations. For computer visualization of point sets used in image sampling, we introduce a mosaic rendering technique.

  5. Accelerated two-dimensional cine DENSE cardiovascular magnetic resonance using compressed sensing and parallel imaging.

    Science.gov (United States)

    Chen, Xiao; Yang, Yang; Cai, Xiaoying; Auger, Daniel A; Meyer, Craig H; Salerno, Michael; Epstein, Frederick H

    2016-06-14

    Cine Displacement Encoding with Stimulated Echoes (DENSE) provides accurate quantitative imaging of cardiac mechanics with rapid displacement and strain analysis; however, image acquisition times are relatively long. Compressed sensing (CS) with parallel imaging (PI) can generally provide high-quality images recovered from data sampled below the Nyquist rate. The purposes of the present study were to develop CS-PI-accelerated acquisition and reconstruction methods for cine DENSE, to assess their accuracy for cardiac imaging using retrospective undersampling, and to demonstrate their feasibility for prospectively-accelerated 2D cine DENSE imaging in a single breathhold. An accelerated cine DENSE sequence with variable-density spiral k-space sampling and golden angle rotations through time was implemented. A CS method, Block LOw-rank Sparsity with Motion-guidance (BLOSM), was combined with sensitivity encoding (SENSE) for the reconstruction of under-sampled multi-coil spiral data. Seven healthy volunteers and 7 patients underwent 2D cine DENSE imaging with fully-sampled acquisitions (14-26 heartbeats in duration) and with prospectively rate-2 and rate-4 accelerated acquisitions (14 and 8 heartbeats in duration). Retrospectively- and prospectively-accelerated data were reconstructed using BLOSM-SENSE and SENSE. Image quality of retrospectively-undersampled data was quantified using the relative root mean square error (rRMSE). Myocardial displacement and circumferential strain were computed for functional assessment, and linear correlation and Bland-Altman analyses were used to compare accelerated acquisitions to fully-sampled reference datasets. For retrospectively-undersampled data, BLOSM-SENSE provided similar or lower rRMSE at rate-2 and lower rRMSE at rate-4 acceleration compared to SENSE (p cine DENSE provided good image quality and expected values of displacement and strain. BLOSM-SENSE-accelerated spiral cine DENSE imaging with 2D displacement encoding can be

  6. Sound scattering in dense granular media

    Institute of Scientific and Technical Information of China (English)

    JIA XiaoPing; LAURENT J; KHIDAS Y; LANGLOIS V

    2009-01-01

    The sound propagation in a dense granular medium is basically characterized by the ratio of wave-length to the grain size. Two types of wave transport are distinguished: one corresponds to coherent waves in the long wavelength limit, the other to short-wavelength scattered waves by the inhomoge-neous contact force networks. These multiply scattered elastic waves are shown to exhibit a diffusive characteristics of transport over long distances of propagation. Determination of the transport mean free path l* and the inelastic absorption (Q~(-1)) allows the inference of the structural properties of the material such as the heterogeneity and internal dissipation. The relevance of our experiments for seismological applications is discussed. Moreover, we apply the correlation technique of the configu-ration-specific sound scattering to monitoring the dynamic behaviour of the granular medium (irre-versible rearrangements) under strong vibration, shearing and thermal cycling, respectively.

  7. Charmonium propagation through a dense medium

    Directory of Open Access Journals (Sweden)

    Kopeliovich B.Z.

    2015-01-01

    Full Text Available Attenuation of a colourless c̄c dipole propagating with a large momentum through a hot medium originates from two sources, Debye screening (melting, and inelastic collisions with surrounding scattering centres (absorption. The former never terminates completely production of a bound charmonium in heavy ion collisions, even at very high temperatures. The latter, is controlled my the magnitude of the dipole cross section, related to the transport coefficient, which is the rate of transverse momentum broadening in the medium. A novel procedure of Lorentz boosting of the Schrödinger equation is developed, which allows to calculate the charmonium survival probability employing the path-integral technique, incorporating both melting and absorption. A novel mechanism of charmonium regeneration in a dense medium is proposed.

  8. Intense, ultrashort light and dense, hot matter

    Indian Academy of Sciences (India)

    G Ravindra Kumar

    2009-07-01

    This article presents an overview of the physics and applications of the interaction of high intensity laser light with matter. It traces the crucial advances that have occurred over the past few decades in laser technology and nonlinear optics and then discusses physical phenomena that occur in intense laser fields and their modeling. After a description of the basic phenomena like multiphoton and tunneling ionization, the physics of plasma formed in dense matter is presented. Specific phenomena are chosen for illustration of the scientific and technological possibilities – simulation of astrophysical phenomena, relativistic nonlinear optics, laser wakefield acceleration, laser fusion, ultrafast real time X-ray diffraction, application of the particle beams produced from the plasma for medical therapies etc. A survey of the Indian activities in this research area appears at the end.

  9. Frontiers and challenges in warm dense matter

    CERN Document Server

    Desjarlais, Michael; Redmer, Ronald; Trickey, Samuel

    2014-01-01

    Warm Dense Matter (WDM) occupies a loosely defined region of phase space intermediate between solid, liquid, gas, and plasma, and typically shares characteristics of two or more of these phases. WDM is generally associated with the combination of strongly coupled ions and moderately degenerate electrons, and careful attention to quantum physics and electronic structure is essential. The lack of a small perturbation parameter greatly limits approximate attempts at its accurate description. Since WDM resides at the intersection of solid state and high energy density physics, many high energy density physics (HEDP) experiments pass through this difficult region of phase space. Thus, understanding and modeling WDM is key to the success of experiments on diverse facilities. These include the National Ignition Campaign centered on the National Ignition Facility (NIF), pulsed-power driven experiments on the Z machine, ion-beam-driven WDM experiments on the NDCX-II, and fundamental WDM research at the Linear Coherent...

  10. Evolution of Binaries in Dense Stellar Systems

    CERN Document Server

    Ivanova, Natalia

    2011-01-01

    In contrast to the field, the binaries in dense stellar systems are frequently not primordial, and could be either dynamically formed or significantly altered from their primordial states. Destruction and formation of binaries occur in parallel all the time. The destruction, which constantly removes soft binaries from a binary pool, works as an energy sink and could be a reason for cluster entering the binary-burning phase. The true binary fraction is greater than observed, as a result, the observable binary fraction evolves differently from the predictions. Combined measurements of binary fractions in globular clusters suggest that most of the clusters are still core-contracting. The formation, on other hand, affects most the more evolutionary advanced stars, which significantly enhances the population of X-ray sources in globular clusters. The formation of binaries with a compact objects proceeds mainly through physical collisions, binary-binary and single-binary encounters; however, it is the dynamical for...

  11. Carbon nitride frameworks and dense crystalline polymorphs

    Science.gov (United States)

    Pickard, Chris J.; Salamat, Ashkan; Bojdys, Michael J.; Needs, Richard J.; McMillan, Paul F.

    2016-09-01

    We used ab initio random structure searching (AIRSS) to investigate polymorphism in C3N4 carbon nitride as a function of pressure. Our calculations reveal new framework structures, including a particularly stable chiral polymorph of space group P 43212 containing mixed s p2 and s p3 bonding, that we have produced experimentally and recovered to ambient conditions. As pressure is increased a sequence of structures with fully s p3 -bonded C atoms and three-fold-coordinated N atoms is predicted, culminating in a dense P n m a phase above 250 GPa. Beyond 650 GPa we find that C3N4 becomes unstable to decomposition into diamond and pyrite-structured CN2.

  12. Plasmon resonance in warm dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Thiele, R; Bornath, T; Fortmann, C; Holl, A; Redmer, R; Reinholz, H; Ropke, G; Wierling, A; Glenzer, S H; Gregori, G

    2008-02-21

    Collective Thomson scattering with extreme ultraviolet light or x-rays is shown to allow for a robust measurement of the free electron density in dense plasmas. Collective excitations like plasmons appear as maxima in the scattering signal. Their frequency position can directly be related to the free electron density. The range of applicability of the standard Gross-Bohm dispersion relation and of an improved dispersion relation in comparison to calculations based on the dielectric function in random phase approximation is investigated. More important, this well-established treatment of Thomson scattering on free electrons is generalized in the Born-Mermin approximation by including collisions. We show that, in the transition region from collective to non-collective scattering, the consideration of collisions is important.

  13. Properties of industrial dense gas plumes

    Science.gov (United States)

    Shaver, E. M.; Forney, L. J.

    Hazardous gases and vapors are often discharged into the atmosphere from industrial plants during catastrophic events (e.g. Union Carbide incident in Bhopal, India). In many cases the discharged components are more dense than air and settle to the ground surface downstream from the stack exit. In the present paper, the buoyant plume model of Hoult, Fay and Forney (1969, J. Air Pollut. Control Ass. 19, 585-590.) has been altered to predict the properties of hazardous discharges. In particular, the plume impingement point, radius and concentration are predicted for typical stack exit conditions, wind speeds and temperature profiles. Asymptotic expressions for plume properties at the impingement point are also derived for a constant crosswind and neutral temperature profile. These formulae are shown to be useful for all conditions.

  14. Constitutive relations for steady, dense granular flows

    Science.gov (United States)

    Vescovi, D.; Berzi, D.; di Prisco, C. G.

    2011-12-01

    In the recent past, the flow of dense granular materials has been the subject of many scientific works; this is due to the large number of natural phenomena involving solid particles flowing at high concentration (e.g., debris flows and landslides). In contrast with the flow of dilute granular media, where the energy is essentially dissipated in binary collisions, the flow of dense granular materials is characterized by multiple, long-lasting and frictional contacts among the particles. The work focuses on the mechanical response of dry granular materials under steady, simple shear conditions. In particular, the goal is to obtain a complete rheology able to describe the material behavior within the entire range of concentrations for which the flow can be considered dense. The total stress is assumed to be the linear sum of a frictional and a kinetic component. The frictional and the kinetic contribution are modeled in the context of the critical state theory [8, 10] and the kinetic theory of dense granular gases [1, 3, 7], respectively. In the critical state theory, the granular material approaches a certain attractor state, independent on the initial arrangement, characterized by the capability of developing unlimited shear strains without any change in the concentration. Given that a disordered granular packing exists only for a range of concentration between the random loose and close packing [11], a form for the concentration dependence of the frictional normal stress that makes the latter vanish at the random loose packing is defined. In the kinetic theory, the particles are assumed to interact through instantaneous, binary and uncorrelated collisions. A new state variable of the problem is introduced, the granular temperature, which accounts for the velocity fluctuations. The model has been extended to account for the decrease in the energy dissipation due to the existence of correlated motion among the particles [5, 6] and to deal with non

  15. Dense QCD: a Holographic Dyonic Salt

    CERN Document Server

    Rho, Mannque; Zahed, Ismail

    2009-01-01

    Dense QCD at zero temperature with a large number of colors is a crystal. We show that in the holographic dual description, the crystal is made out of pairs of dyons with $e=g=\\pm 1$ charges in a salt-like arrangement. We argue that with increasing density the dyon masses and topological charges equalize, turning the salt-like configuration to a bcc of half-instantons. The latter is dual to a cubic crystal of half-skyrmions. We estimate the transition from an fcc crystal of instantons to a bcc crystal of dyons to about 3 times nuclear matter density with a dyon binding energy of about 180 MeV.

  16. Dynamic structure of dense krypton gas

    Science.gov (United States)

    Egelstaff, P. A.; Salacuse, J. J.; Schommers, W.; Ram, J.

    1984-07-01

    We have made molecular-dynamics computer simulations of dense krypton gas (10.6×1027 atoms/m3 and 296 K) using reasonably realistic pair potentials. Comparisons are made with the recent experimental data[P. A. Egelstaff et al., Phys. Rev. A 27, 1106 (1983)] for the dynamic structure factor S(q,ω) over the range 0.4

  17. Dense gas dispersion in the atmosphere

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Morten

    1998-09-01

    Dense gas dispersion is characterized by buoyancy induced gravity currents and reduction of the vertical mixing. Liquefied gas releases from industrial accidents are cold because of the heat of evaporation which determines the density for a given concentration and physical properties. The temperature deficit is moderated by the heat flux from the ground, and this convection is an additional source of turbulence which affects the mixing. A simple model as the soil heat flux is used to estimate the ability of the ground to sustain the heat flux during release. The initial enthalpy, release rate, initial entrainment and momentum are discussed for generic source types and the interaction with obstacles is considered. In the MTH project BA experiments source with and without momentum were applied. The continuously released propane gas passed a two-dimensional removable obstacle perpendicular to the wind direction. Ground-level gas concentrations and vertical profiles of concentration, temperature, wind speed and turbulence were measured in front of and behind the obstacle. Ultrasonic anemometers providing fast velocity and concentration signals were mounted at three levels on the masts. The observed turbulence was influenced by the stability and the initial momentum of the jet releases. Additional information were taken from the `Dessert tortoise` ammonia jet releases, from the `Fladis` experiment with transition from dense to passive dispersion, and from the `Thorney Island` continuous releases of isothermal freon mixtures. The heat flux was found to moderate the negative buoyancy in both the propane and ammonia experiments. The heat flux measurements are compared to an estimate by analogy with surface layer theory. (au) 41 tabs., 146 ills., 189 refs.

  18. Observaciones sobre algunos caracteres de valor taxonómico en el grupo de los carófitos

    Directory of Open Access Journals (Sweden)

    Pedrola, J.

    1990-05-01

    Full Text Available The variability of the microstructurals characters and mineralogical composition of the oogonia of some charophytes extant and fossils is described. Two types of microstructures (W & V are find. These are conservative into populations and are not able to change by the environmental factors. Moreover, these structures are quite constant in some of the phylogenetics groups studied. Consequently it is proposed its utilization in taxonomy. The apparition of original compounds in the Charophyta (vaterite. whewelite, aragonite, etc. is important because it supports an old idea that considerates the Charophyta as an autonomous class between the Clorophyta and the Traqueophyta.

    Se describe la variabilidad de los caracteres microestructurales y la composición mineralógica de las células espirales del oogonio en diversas especies actuales y fósiles del grupo de los carófitos. Se encuentran así, dos tipos de microestructuras diferentes (W y V que se muestran conservativas en el seno de las poblaciones, no moldeables por el ambiente y relativamente constantes dentro de los distintos grupos filogenéticos. En consecuencia, se propone su utilización con fines taxonómicos. La aparición de ciertos elementos mineralógicos (vaterita, whewelita, aragonito etc. resulta remarcable por su originalidad y su apoyo al viejo criterio que consideraba los carófitos como una clase autónoma y quizás de "enlace" entre clorófitos y traqueófitos.

  19. Revisão taxonômica de Leptolobium (Papilionoideae, Leguminosae A taxonomic revision of Leptolobium (Papilionoideae, Leguminosae

    Directory of Open Access Journals (Sweden)

    Rodrigo Schütz Rodrigues

    2012-03-01

    Full Text Available Este trabalho apresenta uma revisão taxonômica de Leptolobium Vogel, incluindo chave de identificação, descrições, ilustrações e mapas de distribuição dos táxons. Leptolobium, com 12 espécies aceitas, inclui árvores ou arbustos com flores de corola branca, actinomorfa a levemente zigomorfa, 10 estames livres, ovário estipitado multiovulado, legumes indeiscentes, samaroides ou nucoides, sementes compressas e eixo hipocótilo-radícula bulboso. Leptolobium é um gênero exclusivamente neotropical, ocorrendo desde o sul do México até o norte da Argentina. Onze espécies ocorrem no Brasil, sendo sete espécies endêmicas. O lectótipo de Sweetia glazioviana Harms é designado neste trabalho. Em adição, são apresentadas informações sobre usos, nomes populares, distribuição geográfica e habitats de cada espécie.This revision of Leptolobium Vogel includes an identification key, descriptions, illustrations, and distribution maps for the taxa. Leptolobium comprises 12 species, and is characterized by its arboreal or shrubby habit, flowers with white, actinomorphic or slightly zygomorphic corollas, 10 free stamens, a stipitate ovary with many ovules, indehiscent (samara-like or nut-like fruits, compressed seeds, and a bulbose hypocotyl-radicle axis. Leptolobium is a neotropical genus that occurs from Mexico to northern Argentina. Eleven species are found in Brazil, seven of which are endemic to the country. The lectotype of Sweetia glazioviana Harms is designated in this paper. In addition, information about uses, common names, geographical distribution, and habitats are provided.

  20. Diversidad y distinción taxonómica de la macrofauna en fondos blandos de la plataforma norte y suroccidental cubana

    Directory of Open Access Journals (Sweden)

    Gema Hidalgo

    2015-11-01

    Full Text Available Se evaluó la diversidad de la macrofauna en fondos blandos de la plataforma marina cubana norte y suroccidental. Se utilizaron índices de variación taxonómica que aportan una nueva dimensión en la interpretación de la diversidad de las comunidades, que son independientes del tipo de hábitat y del esfuerzo de muestreo, y tienen respuesta monotónica ante las perturbaciones del ambiente. La heterogeneidad de taxones fue significativamente mayor en los biotopos areno-fangoso con vegetación, arenoso con vegetación y arenoso con vegetación sobre fondo duro. La diversidad por biotopos reflejó un gradiente de menor a mayor tamaño de partícula y de ausencia a presencia de vegetación. La distinción taxonómica promedio (Δ+ esperada en estas zonas de la plataforma cubana es de 92,5, con límites de confianza de 95% entre 76,7 y 100. Las estaciones con distinción taxonómica promedio <92,5 y fuera del límite de confianza inferior, se pueden considerar con condiciones ambientales de deterioro o que favorecen la diversidad de algún grupo en particular. Los grupos dominantes en esta fracción del bentos son crustáceos y poliquetos, como ocurre en otras regiones tropicales y templadas. Estos resultados sirven de base para la evaluación y monitoreo ambiental del macrozoobentos como componente clave del funcionamiento de ecosistemas marinos en fondos blandos de Cuba.

  1. Synthesis of dense bulk MgB2 by an infiltration and growth process

    Science.gov (United States)

    Bhagurkar, A. G.; Yamamoto, A.; Babu, N. Hari; Durrell, J. H.; Dennis, A. R.; Cardwell, D. A.

    2015-01-01

    We report the processing of dense, superconducting MgB2 (ρ ≈ 2.4 g cm-3) by an infiltration and growth technique. The process, which involves infiltration of liquid magnesium at 750 °C into a pre-defined boron precursor pellet, is relatively simple, results in the formation of a hard, dense structure and has the potential to fabricate large bulk samples of complex geometries. X-ray diffraction has been used to confirm the presence of the MgB2 primary phase with only residual magnesium content in the fully processed samples. The samples exhibit sharp superconducting transitions at 38.4 K and have critical current densities of up to 260 kA cm-2 in self-field at 5 K. Modest measured values of Hc2(0) of 17 T suggest that superconductivity in bulk MgB2 fabricated by this technique is in the clean pairing limit.

  2. Nuevas herramientas para la clasificación taxonómica de los insectos vectores de leishmaniosis: utilidad de los genes mitocondriales

    Directory of Open Access Journals (Sweden)

    Eduar E. Bejarano

    2001-06-01

    Full Text Available La controversia en torno a la posición taxonómica de los flebotomineos, debida en parte a dificultades morfológicas, ha evidenciado la necesidad de buscar nuevas herramientas que permitan no sólo establecer una clasificación más acorde con los procesos evolutivos que han experimentado estos insectos, sino también diferenciar los taxones que conforman los complejos de especies. Con la aparición de las técnicas de biología molecular, el estudio del genoma en insectos vectores de enfermedades se ha convertido en un paso importante en la resolución de muchos conflictos taxonómicos. Las caracteristicas del ADN mitocondrial, entre las que se destacan su rápida evolución y la facilidad con la que se puede aislar y manipular, han favorecido su elección como marcador molecular para estudios de taxonomía. Recientemente, el polimorfisrno de algunos genes mitocondriales comenzó a utilizarse para explorar las relaciones filogenéticas y evolutivas en especies de los géneros Lutzomyia y Phlebotomus. La presente revisión recopila la literatura disponible sobre los principales grupos de flebotomíneos estudiados, los genes mitocondriales más utilizados y su contribución a la clasificación de los vectores de leishmaniosis.

  3. Breast cancer screening in Korean woman with dense breast tissue

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Hee Jung [Dept. of Radiology and Research Institute of Radiology, University of Ulsan College of Medicine, Asan Medical Center, Seoul (Korea, Republic of); Ko, Eun Sook [Dept. of Radiology, Sungkyunkwan University School of Medicine, Samsung Medical Center, Seoul (Korea, Republic of); Yi, Ann [Dept. of Radiology, Seoul National University College of Medicine, Seoul National University Hospital, Seoul (Korea, Republic of)

    2015-11-15

    Asian women, including Korean, have a relatively higher incidence of dense breast tissue, compared with western women. Dense breast tissue has a lower sensitivity for the detection of breast cancer and a higher relative risk for breast cancer, compared with fatty breast tissue. Thus, there were limitations in the mammographic screening for women with dense breast tissue, and many studies for the supplemental screening methods. This review included appropriate screening methods for Korean women with dense breasts. We also reviewed the application and limitation of supplemental screening methods, including breast ultrasound, digital breast tomosynthesis, and breast magnetic resonance imaging; and furthermore investigated the guidelines, as well as the study results.

  4. meta-DENSE complex acquisition for reduced intravoxel dephasing

    Science.gov (United States)

    Aletras, Anthony H.; Arai, Andrew E.

    2004-08-01

    Displacement encoding with stimulated echoes (DENSE) with a meta-DENSE readout and RF phase cycling to suppress the STEAM anti-echo is described for reducing intravoxel dephasing signal loss. This RF phase cycling scheme, when combined with existing meta-DENSE suppression of the T1 recovering signal, yields higher quality DENSE myocardial strain maps. Phantom and human images are provided to demonstrate the technique, which is capable of acquiring phase contrast displacement encoded images at low encoding gradient strengths providing better spatial resolution and less signal loss due to intravoxel dephasing than prior methods.

  5. Distinción taxonómica de los moluscos de fondos blandos del Golfo de Batabanó, Cuba

    Directory of Open Access Journals (Sweden)

    Norberto Capetillo-Piñar

    2015-11-01

    Full Text Available La distinción taxonómica es una medida de diversidad que presenta una serie de ventajas que dan connotación relevante a la ecología teórica y aplicada. La utilidad de este tipo de medida como otro método para evaluar la biodiversidad de los ecosistemas marinos bentónicos de fondos blandos del Golfo de Batabanó (Cuba se comprobó mediante el uso de los índices de distinción taxonómica promedio (Delta+ y la variación en la distinción taxonómica (Lambda+ de las comunidades de moluscos. Para este propósito, se utilizaron los inventarios de especies de moluscos bentónicos de fondos blandos obtenidos en el periodo 1981-1985 y en los años 2004 y 2007. Ambos listados de especies fueron analizados y comparados a escala espacial y temporal. La composición taxonómica entre el periodo y años estudiados se conformó de 3 clases, 20 órdenes, 60 familias, 137 géneros y 182 especies, observándose, excepto en el nivel de clase, una disminución no significativa de esta composición en 2004 y 2007. A escala espacial se detectó una disminución significativa en la riqueza taxonómica en el 2004. No se detectaron diferencias significativas en Delta+ y Lambda+ a escala temporal, pero si a escala espacial, hecho que se puede atribuir al efecto combinado del incremento de las actividades antropogénicas en la región con los efectos inducidos por los huracanes. Estos resultados sugieren que el par de índices Delta+ y Lambda+ son buenos descriptores de la biodiversidad de las comunidades de moluscos bentónicos de fondos blandos del Golfo de Batabanó.

  6. Optical diagnostic of warm dense matter at NDCXI

    Science.gov (United States)

    Ni, Pavel; Bieniosek, Frank; Barnard, John; Henestroza, Enrique; Lidia, Steve; More, Dick

    2010-11-01

    This work is related to recently warm dense matter experiments at Lawrence Berkeley National Laboratory (LBNL), Neutralized Drift Compression Experiment (NDCX) accelerator, which delivers a 30-mA, 350-keV K^+ ion beam. Using the recently-developed technique of neutralized drift compression, the beam is simultaneously compressed longitudinally by a factor of 50, and focused transversely down to a 1 mm spot. The beam pulse is used to pulse heat various target materials, including Al, W, C, Pt and Si, above 3000 K driving samples into two-phase, liquid-vapor states. The next generation accelerator, NDCX-II, is being built and scheduled to be accomplished in 2012. This new machine will, utilize 2 MeV Li+ ions, to heat 2 micrometer thick metal targets up to 1,5 eV in 0.5 ns. This will allow us investigate near critical points properties of matter. The talk will focus on diagnostics aspects of WDM at NDCX. The fielded diagnostics include a specially developed three-channel optical pyrometer which probes color temperatures of the target at 750 nm, 1000 nm and 1500 nm, with 75 ps temporal resolution. Continuous target emission from 450 nm to 850 nm is recorded by a custom spectrometer, consisting of a high dynamic range Hamamatsu streak camera and a holographic grating. Free expansion of the sample is measured by a VISAR. Future diagnostics for the NDX-II user facility will be also discussed.

  7. Dense Molecular Cores Being Externally Heated

    CERN Document Server

    Kim, Gwanjeong; Gopinathan, Maheswar; Jeong, Woong-Seob; Kim, Mi-Ryang

    2016-01-01

    We present results of our study on eight dense cores, previously classified as starless, using infrared (3-160 {\\micron}) imaging observations with \\textit{AKARI} telescope and molecular line (HCN and N$_2$H$^+$) mapping observations with \\textit{KVN} telescope. Combining our results with the archival IR to mm continuum data, we examined the starless nature of these eight cores. Two of the eight cores are found to harbor faint protostars having luminosity of $\\sim0.3-4.4$ L$_{\\odot}$. The other six cores are found to remain as starless and probably are in a dynamically transitional state. The temperature maps produced using multi-wavelength images show an enhancement of about 3-6 K towards the outer boundary of these cores, suggesting that they are most likely being heated externally by nearby stars and/or interstellar radiation fields. Large virial parameters and an over-dominance of red asymmetric line profiles over the cores may indicate that the cores are set into either an expansion or an oscillatory mot...

  8. The ionization fraction in dense clouds

    CERN Document Server

    De Boisanger, C B; Van Dishoeck, E F

    1995-01-01

    We present submillimeter observations of various molecular ions toward two dense clouds, NGC 2264 IRS1 and W 3 IRS5, in order to investigate their ionization fraction. Analysis of the line intensity ratios by the way of statistical equilibrium calculations allows determination of the physical parameters: n(H2)~(1-2)e6 cm-3 and T(kin)~50-100 K. Column densities and abundances are also derived. Together, the abundances of the observed ions provide a lower limit to the ionization fraction, which is (2-3)e-9 in both clouds. In order to better constrain the electron abundance, a simple chemical model is built which calculates the steady state abundances of the major positive ions, using the observed abundances wherever available. With reasonable assumptions, good agreement within a factor of two with the observations can be achieved. The calculated electron fraction is x(e)= (1.0-3.3)e-8 in the case of NGC 2264 and x(e)=(0.5-1.1)e-8 for W 3 IRS5. In the first case, the high abundance of N2H+ requires a rather high...

  9. Elemental nitrogen partitioning in dense interstellar clouds

    CERN Document Server

    Daranlot, Julien; Bergeat, Astrid; Costes, Michel; Loison, Jean-Christophe; Wakelam, Valentine; Hickson, Kevin M

    2012-01-01

    Many chemical models of dense interstellar clouds predict that the majority of gas-phase elemental nitrogen should be present as N2, with an abundance approximately five orders of magnitude less than that of hydrogen. As a homonuclear diatomic molecule, N2 is difficult to detect spectroscopically through infrared or millimetre-wavelength transitions so its abundance is often inferred indirectly through its reaction product N2H+. Two main formation mechanisms each involving two radical-radical reactions are the source of N2 in such environments. Here we report measurements of the low temperature rate constants for one of these processes, the N + CN reaction down to 56 K. The effect of the measured rate constants for this reaction and those recently determined for two other reactions implicated in N2 formation are tested using a gas-grain model employing a critically evaluated chemical network. We show that the amount of interstellar nitrogen present as N2 depends on the competition between its gas-phase format...

  10. Kinetic Simulations of Dense Plasma Focus Breakdown

    Science.gov (United States)

    Schmidt, A.; Higginson, D. P.; Jiang, S.; Link, A.; Povilus, A.; Sears, J.; Bennett, N.; Rose, D. V.; Welch, D. R.

    2015-11-01

    A dense plasma focus (DPF) device is a type of plasma gun that drives current through a set of coaxial electrodes to assemble gas inside the device and then implode that gas on axis to form a Z-pinch. This implosion drives hydrodynamic and kinetic instabilities that generate strong electric fields, which produces a short intense pulse of x-rays, high-energy (>100 keV) electrons and ions, and (in deuterium gas) neutrons. A strong factor in pinch performance is the initial breakdown and ionization of the gas along the insulator surface separating the two electrodes. The smoothness and isotropy of this ionized sheath are imprinted on the current sheath that travels along the electrodes, thus making it an important portion of the DPF to both understand and optimize. Here we use kinetic simulations in the Particle-in-cell code LSP to model the breakdown. Simulations are initiated with neutral gas and the breakdown modeled self-consistently as driven by a charged capacitor system. We also investigate novel geometries for the insulator and electrodes to attempt to control the electric field profile. The initial ionization fraction of gas is explored computationally to gauge possible advantages of pre-ionization which could be created experimentally via lasers or a glow-discharge. Prepared by LLNL under Contract DE-AC52-07NA27344.

  11. Order and instabilities in dense bacterial colonies

    Science.gov (United States)

    Tsimring, Lev

    2012-02-01

    The structure of cell colonies is governed by the interplay of many physical and biological factors, ranging from properties of surrounding media to cell-cell communication and gene expression in individual cells. The biomechanical interactions arising from the growth and division of individual cells in confined environments are ubiquitous, yet little work has focused on this fundamental aspect of colony formation. By combining experimental observations of growing monolayers of non-motile strain of bacteria Escherichia coli in a shallow microfluidic chemostat with discrete-element simulations and continuous theory, we demonstrate that expansion of a dense colony leads to rapid orientational alignment of rod-like cells. However, in larger colonies, anisotropic compression may lead to buckling instability which breaks perfect nematic order. Furthermore, we found that in shallow cavities feedback between cell growth and mobility in a confined environment leads to a novel cell streaming instability. Joint work with W. Mather, D. Volfson, O. Mondrag'on-Palomino, T. Danino, S. Cookson, and J. Hasty (UCSD) and D. Boyer, S. Orozco-Fuentes (UNAM, Mexico).

  12. Permutation Matrix Method for Dense Coding Using GHZ States

    Institute of Scientific and Technical Information of China (English)

    JIN Rui-Bo; CHEN Li-Bing; WANG Fa-Qiang; SU Zhi-Kun

    2008-01-01

    We present a new method called the permutation matrix method to perform dense coding using Greenberger-Horne-Zeilinger (GHZ) states. We show that this method makes the study of dense coding systematically and regularly. It also has high potential to be realized physically.

  13. Mining connected global and local dense subgraphs for bigdata

    Science.gov (United States)

    Wu, Bo; Shen, Haiying

    2016-01-01

    The problem of discovering connected dense subgraphs of natural graphs is important in data analysis. Discovering dense subgraphs that do not contain denser subgraphs or are not contained in denser subgraphs (called significant dense subgraphs) is also critical for wide-ranging applications. In spite of many works on discovering dense subgraphs, there are no algorithms that can guarantee the connectivity of the returned subgraphs or discover significant dense subgraphs. Hence, in this paper, we define two subgraph discovery problems to discover connected and significant dense subgraphs, propose polynomial-time algorithms and theoretically prove their validity. We also propose an algorithm to further improve the time and space efficiency of our basic algorithm for discovering significant dense subgraphs in big data by taking advantage of the unique features of large natural graphs. In the experiments, we use massive natural graphs to evaluate our algorithms in comparison with previous algorithms. The experimental results show the effectiveness of our algorithms for the two problems and their efficiency. This work is also the first that reveals the physical significance of significant dense subgraphs in natural graphs from different domains.

  14. Phase Structure and Transport Properties of Dense Quark Matter

    CERN Document Server

    Schaefer, Thomas

    2010-01-01

    We provide a summary of our current knowledge of the phase structure of very dense quark matter. We concentrate on the question how the ground state at asymptotically high density -- color-flavor-locked (CFL) matter -- is modified as the density is lowered. We discuss the nature of the quasi-particle excitations, and present work on the transport properties of dense QCD matter.

  15. Finding dense locations in symbolic indoor tracking data

    DEFF Research Database (Denmark)

    Ahmed, Tanvir; Pedersen, Torben Bach; Lu, Hua

    2017-01-01

    Finding the dense locations in large indoor spaces is very useful for many applications such as overloaded area detection, security control, crowd management, indoor navigation, and so on. Indoor tracking data can be enormous and are not immediately ready for finding dense locations. This paper...

  16. Enhanced relativistic-electron-beam energy loss in warm dense aluminum.

    Science.gov (United States)

    Vaisseau, X; Debayle, A; Honrubia, J J; Hulin, S; Morace, A; Nicolaï, Ph; Sawada, H; Vauzour, B; Batani, D; Beg, F N; Davies, J R; Fedosejevs, R; Gray, R J; Kemp, G E; Kerr, S; Li, K; Link, A; McKenna, P; McLean, H S; Mo, M; Patel, P K; Park, J; Peebles, J; Rhee, Y J; Sorokovikova, A; Tikhonchuk, V T; Volpe, L; Wei, M; Santos, J J

    2015-03-01

    Energy loss in the transport of a beam of relativistic electrons in warm dense aluminum is measured in the regime of ultrahigh electron beam current density over 2×10^{11}  A/cm^{2} (time averaged). The samples are heated by shock compression. Comparing to undriven cold solid targets, the roles of the different initial resistivity and of the transient resistivity (upon target heating during electron transport) are directly observable in the experimental data, and are reproduced by a comprehensive set of simulations describing the hydrodynamics of the shock compression and electron beam generation and transport. We measured a 19% increase in electron resistive energy loss in warm dense compared to cold solid samples of identical areal mass.

  17. Graphle: Interactive exploration of large, dense graphs

    Directory of Open Access Journals (Sweden)

    Huttenhower Curtis

    2009-12-01

    Full Text Available Abstract Background A wide variety of biological data can be modeled as network structures, including experimental results (e.g. protein-protein interactions, computational predictions (e.g. functional interaction networks, or curated structures (e.g. the Gene Ontology. While several tools exist for visualizing large graphs at a global level or small graphs in detail, previous systems have generally not allowed interactive analysis of dense networks containing thousands of vertices at a level of detail useful for biologists. Investigators often wish to explore specific portions of such networks from a detailed, gene-specific perspective, and balancing this requirement with the networks' large size, complex structure, and rich metadata is a substantial computational challenge. Results Graphle is an online interface to large collections of arbitrary undirected, weighted graphs, each possibly containing tens of thousands of vertices (e.g. genes and hundreds of millions of edges (e.g. interactions. These are stored on a centralized server and accessed efficiently through an interactive Java applet. The Graphle applet allows a user to examine specific portions of a graph, retrieving the relevant neighborhood around a set of query vertices (genes. This neighborhood can then be refined and modified interactively, and the results can be saved either as publication-quality images or as raw data for further analysis. The Graphle web site currently includes several hundred biological networks representing predicted functional relationships from three heterogeneous data integration systems: S. cerevisiae data from bioPIXIE, E. coli data using MEFIT, and H. sapiens data from HEFalMp. Conclusions Graphle serves as a search and visualization engine for biological networks, which can be managed locally (simplifying collaborative data sharing and investigated remotely. The Graphle framework is freely downloadable and easily installed on new servers, allowing any

  18. Dense surface reconstruction with shadows in MIS.

    Science.gov (United States)

    Lin, Bingxiong; Sun, Yu; Qian, Xiaoning

    2013-09-01

    Three-dimensional reconstruction of internal organ surfaces provides useful information for better control and guidance of the operations of surgical tools for minimally invasive surgery (MIS). The current reconstruction techniques using stereo cameras are still challenging due to the difficulties in correspondence matching in MIS, since there is very limited texture but significant specular reflection on organ surfaces. This paper proposes a new approach to overcome the problem by introducing weakly structured light actively casting surgical tool shadows on organ surfaces. The contribution of this paper is twofold: first, we propose a robust approach to extract shadow edges from a sequence of shadowed images; second, we develop a novel field surface interpolation (FSI) approach to obtain an accurate and dense disparity map. Our approach does not rely on texture information and is able to reconstruct accurate 3-D information by exploiting shadows from surgical tools. One advantage is that the point correspondences are directly calculated and no explicit stereo matching is required, which ensures the efficiency of the method. Another advantage is the minimum hardware requirement because only stereo cameras and a separated single-point light source are required. We evaluated the proposed approach using both phantom models and ex vivo images. Based on the experimental results, we achieved the precision of the recovered 3-D surfaces within 0.7 mm for phantom models and 1.2 mm for ex vivo images. The comparison of disparity maps indicates that with the addition of shadows, the proposed method significantly outperforms the state-of-the-art stereo algorithms for MIS.

  19. Single-Particle Cryo-EM and 3D Reconstruction of Hybrid Nanoparticles with Electron-Dense Components.

    Science.gov (United States)

    Yu, Guimei; Yan, Rui; Zhang, Chuan; Mao, Chengde; Jiang, Wen

    2015-10-01

    Single-particle cryo-electron microscopy (cryo-EM), accompanied with 3D reconstruction, is a broadly applicable tool for the structural characterization of macromolecules and nanoparticles. Recently, the cryo-EM field has pushed the limits of this technique to higher resolutions and samples of smaller molecular mass, however, some samples still present hurdles to this technique. Hybrid particles with electron-dense components, which have been studied using single-particle cryo-EM yet with limited success in 3D reconstruction due to the interference caused by electron-dense elements, constitute one group of such challenging samples. To process such hybrid particles, a masking method is developed in this work to adaptively remove pixels arising from electron-dense portions in individual projection images while maintaining maximal biomass signals for subsequent 2D alignment, 3D reconstruction, and iterative refinements. As demonstrated by the success in 3D reconstruction of an octahedron DNA/gold hybrid particle, which has been previously published without a 3D reconstruction, the devised strategy that combines adaptive masking and standard single-particle 3D reconstruction approach has overcome the hurdle of electron-dense elements interference, and is generally applicable to cryo-EM structural characterization of most, if not all, hybrid nanomaterials with electron-dense components.

  20. Ultramassive dense early-type galaxies: Velocity dispersions and number density evolution since z = 1.6

    Science.gov (United States)

    Gargiulo, A.; Saracco, P.; Tamburri, S.; Lonoce, I.; Ciocca, F.

    2016-08-01

    Aims: We investigate the stellar mass assembly history of ultramassive (M⋆ ≳ 1011M⊙) dense (Σ = M⋆/2πRe2> 2500M⊙ pc-2) early-type galaxies (ETGs, elliptical and spheroidal galaxies) selected on basis of visual classification over the last 9 Gyr. Methods: We traced the evolution of the comoving number density ρ of ultramassive dense ETGs and compared their structural (effective radius Re and stellar mass M⋆) and dynamical (velocity dispersion σe) parameters over the redshift range 0 advantage of the COSMOS spectroscopic survey to probe the intermediate redshift range [0.2-1.0]. We derived the number density of ultramassive dense local ETGs from the SDSS sample taking all of the selection bias affecting the spectroscopic sample into account. To compare the dynamical and structural parameters, we collected a sample of 11 ultramassive dense ETGs at 1.2 measurements are available. For four of these ETGs (plus one at z = 1.91), we present previously unpublished estimates of velocity dispersion, based on optical VLT-FORS2 spectra. We probe the intermediate redshift range (0.2 ≲ z ≲ 0.9) and the local Universe with different ETGs samples. Results: We find that the comoving number density of ultramassive dense ETGs evolves with z as ρ(z) ∝ (1 + z)0.3 ± 0.8 implying a decrease of ~25% of the population of ultramassive dense ETGs since z = 1.6. By comparing the structural and dynamical properties of high-z ultramassive dense ETGs over the range 0 ≲ z < 1.6 in the [Re, M⋆, σe] plane, we find that all of the ETGs of the high-z sample have counterparts with similar properties in the local Universe. This implies either that the majority (~70%) of ultramassive dense ETGs already completed the assembly and shaping at ⟨ z ⟩ = 1.4, or that, if a significant portion of dense ETGs evolves in size, new ultramassive dense ETGs must form at z < 1.5 to maintain their number density at almost constant. The difficulty in identify good progenitors for these

  1. Towards the heavy dense QCD phase diagram using Complex Langevin simulations

    CERN Document Server

    Aarts, Gert; Jäger, Benjamin; Seiler, Erhard; Sexty, Dénes; Stamatescu, Ion-Olimpiu

    2015-01-01

    Monte Carlo methods cannot probe far into the QCD phase diagram with a real chemical potential, due to the famous sign problem. Complex Langevin simulations, using adaptive step-size scaling and gauge cooling, are suited for sampling path integrals with complex weights. We report here on tests of the deconfinement transition in pure Yang-Mills SU(3) simulations and present an update on the QCD phase diagram in the limit of heavy and dense quarks.

  2. Perda de diversidade taxonômica e funcional de aves em área urbana no sul do Brasil

    Directory of Open Access Journals (Sweden)

    Anne G. Sacco

    2015-09-01

    Full Text Available RESUMO A urbanização é um processo globalmente estudado e considerado um dos distúrbios mais drásticos sobre a biodiversidade. Este estudo teve como objetivo avaliar como diferentes intensidades de urbanização atuam na estruturação da avifauna em uma cidade de tamanho médio e inserida em região de área úmida. Além das métricas tradicionais de riqueza, abundância e composição taxonômica, verificou-se como a diversidade e redundâncias funcionais das aves são influenciadas pelo gradiente urbano. A área urbana estudada foi a cidade de Pelotas (31°46'S, 52°20'W, extremo sul do Brasil, que está inserida em uma área úmida do bioma Pampa. A amostragem das aves e a medida das variáveis urbanas (número de árvores, número de construções de até dois andares ou de mais de dois andares, presença de ambiente aquático e presença de ambiente aberto foram realizadas em 216 pontos fixos de observação que foram marcados em diferentes intensidades de urbanização. Os atributos funcionais utilizados para caracterizar as espécies foram os relacionados à massa, dieta, substrato de forrageamento e substrato de nidificação. O aumento da intensidade de urbanização diminuiu a riqueza, a abundância e a diversidade funcional, sendo que a redundância, diferente do esperado, não aumentou com a urbanização. Foi possível observar que os atributos relacionados a áreas com urbanização mais intensa (com contruções de até dois andares e de mais de dois andares foram: preferência por forrageamento no ar, onivoria e ninhos em cavidades. Os atributos relacionados a áreas com menor intensidade de urbanização e com áreas úmidas foram: preferência de forrageamento na água e de ninhos sobre a água; e aquele relacionados a menores intensidades de urbanização (com maior número de árvores e maior presença de ambientes abertos foram: preferência por ninhos em vegetação, em locais baixos e no solo e carnivoria. O estudo

  3. Rethinking phylogeographic structure and historical refugia in the rufous-capped babblerCyanoderma ruficeps in light of range-wide genetic sampling and paleodistributional reconstructions

    Institute of Scientific and Technical Information of China (English)

    Peter A HOSNER; Huatao LIU; A Townsend PETERSON; Robert G MOYLE

    2015-01-01

    Combining ecological niche modeling with phylogeography has become a popular approach to understand how his-torical climate changes have created and maintained population structure. However, methodological choices in geographic ex-tents and environmental layer sets employed in modeling may affect results and interpretations profoundly. Here, we infer range-wide phylogeographic structure and model ecological niches ofCyanoderma ruficeps, and compare results to previous stu-dies that examined this species across mainland China and Taiwan only. Use of dense taxon sampling of closely related species as outgroups questionC. ruficeps monophyly. Furthermore, previously unsampledC. ruficeps populations from central Vietnam were closely related to disjunct western populations (Nepal, Tibet, Myanmar, Yunnan), rather than to geographically proximate populations in northern Vietnam and eastern China. Phylogeographic structure is more complex than previously appreciated; niche model projections to Last Glacial Maximum climate scenarios identified larger areas of suitable conditions than previous studies, but potential distributional limits differed markedly between climate models employed and were dependent upon inter-pretation of non-analogous historical climate scenarios. Previously identified population expansion across central China may re-sult from colonization from refugial distributions during the Last Interglacial, rather than the Last Glacial Maximum, as pre-viously understood [Current Zoology 61 (5): 901–909, 2015].

  4. Finding Hierarchical and Overlapping Dense Subgraphs using Nucleus Decompositions

    Energy Technology Data Exchange (ETDEWEB)

    Seshadhri, Comandur [The Ohio State Univ., Columbus, OH (United States); Pinar, Ali [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sariyuce, Ahmet Erdem [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Catalyurek, Umit [The Ohio State Univ., Columbus, OH (United States)

    2014-11-01

    Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique, k-densest subgraph) are NP-hard. Furthermore, the goal is rarely to nd the \\true optimum", but to identify many (if not all) dense substructures, understand their distribution in the graph, and ideally determine a hierarchical structure among them. Current dense subgraph nding algorithms usually optimize some objective, and only nd a few such subgraphs without providing any hierarchy. It is also not clear how to account for overlaps in dense substructures. We de ne the nucleus decomposition of a graph, which represents the graph as a forest of nuclei. Each nucleus is a subgraph where smaller cliques are present in many larger cliques. The forest of nuclei is a hierarchy by containment, where the edge density increases as we proceed towards leaf nuclei. Sibling nuclei can have limited intersections, which allows for discovery of overlapping dense subgraphs. With the right parameters, the nuclear decomposition generalizes the classic notions of k-cores and k-trusses. We give provable e cient algorithms for nuclear decompositions, and empirically evaluate their behavior in a variety of real graphs. The tree of nuclei consistently gives a global, hierarchical snapshot of dense substructures, and outputs dense subgraphs of higher quality than other state-of-theart solutions. Our algorithm can process graphs with tens of millions of edges in less than an hour.

  5. HNCO in massive galactic dense cores

    Science.gov (United States)

    Zinchenko, I.; Henkel, C.; Mao, R. Q.

    2000-09-01

    We surveyed 81 dense molecular cores associated with regions of massive star formation and Sgr A in the JK-1K-1 = 505-404 and 10010-909 lines of HNCO. Line emission was detected towards 57 objects. Selected subsamples were also observed in the 101-000, 404-303, 707-606, 15015-14014, 16016-15015 and 21021-20020 lines, covering a frequency range from 22 to 461 GHz. HNCO lines from the K-1 = 2,3 ladders were detected in several sources. Towards Orion-KL, K-1 = 5 transitions with upper state energies Eu/k ~ 1100 and 1300 K could be observed. Five HNCO cores were mapped. The sources remain spatially unresolved at 220 and 461 GHz (10010-909 and 21010-20020 transitions) with beam sizes of 24'' and 18\\arcsec, respectively. The detection of hyperfine structure in the 101-000 transition is consistent with optically thin emission under conditions of Local Thermodynamic Equilibrium (LTE). This is corroborated by a rotational diagram analysis of Orion-KL that indicates optically thin line emission also for transitions between higher excited states. At the same time a tentative detection of interstellar HN13CO (the 100,10-90,9 line at 220 GHz toward G 310.12-0.20) suggests optically thick emission from some rotational transitions. Typical HNCO abundances relative to H2 as derived from a population diagram analysis are ~ 10-9. The rotational temperatures reach ~ 500 K. The gas densities in regions of HNCO K-1=0 emission should be n>~ 106 cm-3 and in regions of K-1>0 emission about an order of magnitude higher even for radiative excitation. HNCO abundances are found to be enhanced in high-velocity gas. HNCO integrated line intensities correlate well with those of thermal SiO emission. This indicates a spatial coexistence of the two species and may hint at a common production mechanism, presumably based on shock chemistry. Based on the observations collected at the European Southern Observatory, La Silla, Chile and on observations with the Heinrich-Hertz-Telescope (HHT). The HHT

  6. SUPPORTED DENSE CERAMIC MEMBRANES FOR OXYGEN SEPARATION

    Energy Technology Data Exchange (ETDEWEB)

    Timothy L. Ward

    2000-06-30

    . This successfully reduced cracking, however the films retained open porosity. The investigation of this concept will be continued in the final year of the project. Investigation of a metal organic chemical vapor deposition (MOCVD) method for defect mending in dense membranes was also initiated. An appropriate metal organic precursor (iron tetramethylheptanedionate) was identified whose deposition can be controlled by access to oxygen at temperatures in the 280-300 C range. Initial experiments have deposited iron oxide, but only on the membrane surface; thus refinement of this method will continue.

  7. Neutrino reactions in hot and dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Lohs, Andreas

    2015-04-13

    In this thesis, neutrino reactions in hot and dense matter are studied. In particular, this work is concerned with neutrino-matter interactions that are relevant for neutrino transport in core-collapse supernovae (CCSNe). The majority of the energy from a CCSN is released in the form of neutrinos. Accurate understanding and computation of these interactions is most relevant to achieve sufficiently reliable predictions for the evolution of CCSNe and other related question such as the production of heavy elements or neutrino oscillations. For this purpose this work follows the combined approach of searching for new important neutrino reactions and improving the computation of those reactions that are already implemented. First we estimate the relevance of charged-current weak interactions that include muon-neutrinos or muons, as well as the role of neutron decay for neutrino transport in CCSNe. All of these reactions were previously neglected in CCSN-simulations. We derive and compute the matrix element and subsequent semi-analytic expressions for transport properties like the inverse mean free path of the new reactions. It is found that these reactions are important for muon neutrinos and low energy electron antineutrinos at very high densities in the protoneutron star surface. Consequently their implementation might lead to several changes in the prediction of CCSNe signatures such as the nucleosynthesis yields. Second we improve the precision in the computation of well known neutrino-nucleon reactions like neutrino absorption on neutrons. We derive semi-analytic expressions for transport properties that use less restrictive approximations while keeping the computational demand constant. Therefore we consider the full relativistic kinematics of all participating particles i.e. allowing for relativistic nucleons and finite lepton masses. Also the weak magnetism terms of the matrix elements are explicitly included to all orders. From our results we suggest that the

  8. Subtle Monte Carlo Updates in Dense Molecular Systems.

    Science.gov (United States)

    Bottaro, Sandro; Boomsma, Wouter; E Johansson, Kristoffer; Andreetta, Christian; Hamelryck, Thomas; Ferkinghoff-Borg, Jesper

    2012-02-14

    Although Markov chain Monte Carlo (MC) simulation is a potentially powerful approach for exploring conformational space, it has been unable to compete with molecular dynamics (MD) in the analysis of high density structural states, such as the native state of globular proteins. Here, we introduce a kinetic algorithm, CRISP, that greatly enhances the sampling efficiency in all-atom MC simulations of dense systems. The algorithm is based on an exact analytical solution to the classic chain-closure problem, making it possible to express the interdependencies among degrees of freedom in the molecule as correlations in a multivariate Gaussian distribution. We demonstrate that our method reproduces structural variation in proteins with greater efficiency than current state-of-the-art Monte Carlo methods and has real-time simulation performance on par with molecular dynamics simulations. The presented results suggest our method as a valuable tool in the study of molecules in atomic detail, offering a potential alternative to molecular dynamics for probing long time-scale conformational transitions.

  9. Enhanced Dense Gas Fraction in Ultra-Luminous Infrared Galaxies

    CERN Document Server

    Juneau, S; Moustakas, J; Shirley, Y L; Bussmann, R S; Kennicutt, R C; Bout, P A Vanden

    2009-01-01

    We present a detailed analysis of the relation between infrared luminosity and molecular line luminosity, for a variety of molecular transitions, using a sample of 34 nearby galaxies spanning a broad range of infrared luminosities (10^{10} < L_{IR} < 10^{12.5} L_sun). We show that the power-law index of the relation is sensitive to the critical density of the molecular gas tracer used, and that the dominant driver in observed molecular line ratios in galaxies is the gas density. As most nearby ultraluminous infrared galaxies (ULIRGs) exhibit strong signatures of active galactic nuclei (AGN) in their center, we revisit previous claims questioning the reliability of HCN as a probe of the dense gas responsible for star formation in the presence of AGN. We find that the enhanced HCN(1-0)/CO(1-0) luminosity ratio observed in ULIRGs can be successfully reproduced using numerical models with fixed chemical abundances and without AGN-induced chemistry effects. We extend this analysis to a total of ten molecular...

  10. Warm Dense Matter Experiments Driven by Ion Beams

    Science.gov (United States)

    Bieniosek, F. M.; Henestroza, E.; Jung, J. Y.; Leitner, M. A.; Lidia, S.; Logan, B. G.; More, R. M.; Ni, P. A.; Roy, P. K.; Seidl, P. A.; Waldron, W. L.; Barnard, J. J.; Friedman, A.

    2009-11-01

    Intense beams of heavy ions are capable of heating volumetric samples of matter to high energy density. We present results from warm dense matter (WDM) experiments at NDCX-I. The 0.3 MeV, 30-mA K^+ beam from the NDCX-I accelerator heats foil targets by combined longitudinal and transverse neutralized drift compression of the ion beam to a spot size ˜ 1 mm, and compressed pulse length ˜ 2 ns. The uncompressed beam flux is >=500 kW/cm^2, and the compressed pulse flux is > 5 MW/cm^2. Both the compressed and uncompressed parts of the NDCX-I beam heat targets. Future plans include construction of the NDCX-II accelerator, which is designed to heat targets at the Bragg peak using a 3-4 MeV lithium ion beam. We have developed a target chamber and target diagnostics including a fast multi-channel optical pyrometer, optical streak camera, and high-speed gated cameras. We compare measurements of temperature, droplet formation and other target parameters with model predictions. Continued improvements in beam tuning, bunch compression, and other upgrades are expected to yield higher flux on target.

  11. Phosphorus-bearing molecules in massive dense cores

    CERN Document Server

    Fontani, F; Caselli, P; Vasyunin, A; Palau, Aina

    2016-01-01

    Phosphorus is a crucial element for the development of life, but so far P-bearing molecules have been detected only in a few astrophysical objects, hence its interstellar chemistry is almost totally unknown. Here we show new detections of phosphorus nitride in a sample of dense cores in different evolutionary stages of the intermediate- and high-mass star formation process: starless, with protostellar objects, and with ultracompact HII regions. All detected PN line widths are smaller than ~5 km/s , and they arise from regions associated with kinetic temperatures smaller than 100 K. Because the few previous detections reported in the literature are associated with warmer and more turbulent sources, the results of this work show that PN can arise from relatively quiescent and cold gas. This information is challenging for theoretical models that invoke either high desorption temperatures or grain sputtering from shocks to release phosphorus into the gas phase. Derived column densities are of the order of 10^{11-...

  12. External quality assessment of platelet disorder investigations: results of international surveys on diagnostic tests for dense granule deficiency and platelet aggregometry interpretation.

    Science.gov (United States)

    Hayward, Catherine P M; Moffat, Karen A; Plumhoff, Elizabeth; Timleck, Marnie; Hoffman, Suzanne; Spitzer, Ernie; Van Cott, Elizabeth M; Meijer, Piet

    2012-09-01

    The quality of platelet aggregation and dense granule deficiency testing is important for diagnosing platelet function disorders. After a successful pilot exercise on diagnosing platelet dense granule deficiency by electron microscopy (EM), the North American Specialized Coagulation Laboratory Association (NASCOLA) has launched regular external quality assurance (EQA) for dense granule EM, as well as for the interpretation of platelet aggregation findings. EQA records were analyzed to assess performance. For EM EQA, between 2009 and 2011, there was excellent performance in distinguishing normal from dense granule-deficient samples and good (>70%) agreement on classifying most electron dense structures in platelets. For aggregation EQA, some normal variants were misclassified and overall case interpretations were more acceptable for rare disorders than for common findings. NASCOLA experiences with these EQAs indicate that there is a need to improve the quality of platelet disorder evaluations. For aggregometry interpretations, deficits in performance could be addressed by translating guideline recommendations into practice.

  13. Morfologia dos tricomas das pétalas de espécies de Pseudobombax Dugand (Malvaceae, Bombacoideae) e seu significado taxonômico

    OpenAIRE

    Jefferson Guedes de Carvalho-Sobrinho; Francisco de Assis Ribeiro dos Santos; Luciano Paganucci de Queiroz

    2009-01-01

    O gênero Pseudobombax Dugand apresenta cerca de 30 espécies, é restrito à região Neotropical e apresenta taxonomia complexa, com muitas de suas espécies mal circunscritas. Parte de seus problemas taxonômicos é conseqüência do fato de que suas espécies perdem as folhas na floração e, portanto, a maioria delas é representada apenas por flores nas coleções de herbário. Neste trabalho, investigou-se a morfologia dos tricomas presentes nas pétalas de oito espécies de Pseudobombax. O estudo utilizo...

  14. New occurrences of the Genus Cestrum L. (Solanaceae) taxon for the state of Bahia-Brazil - DOI: 10.4025/actascibiolsci.v27i1.1357

    OpenAIRE

    Silvana do Nascimento Silva; Francisco de Assis Ribeiro dos Santos

    2008-01-01

    Trabalho objetivou realizar um levantamento das espécies de Cestrum para o sul da Bahia. Foram feitas coletas assistemáticas mensais no sul da Bahia na floresta higrófila. O material coletado foi identificado, descrito e ilustrado da maneira convencional utilizado em estudos taxonômicos. Foram encontradas as seguintes espécies: Cestrum lanceolatum Schott. Ex Sendtn, C. megalophyllum Dunal, C. parqui L’Her e C. schlectendahlii G. DonThe objective of this study was to carry out a survey of the ...

  15. Elementos traqueais de cinco táxons de Cactaceae da caatinga pernambucana, Brasil Traqueary elements of five taxons of Cactaceae of the caatinga from Pernambuco State, Brazil

    Directory of Open Access Journals (Sweden)

    Emília Cristina Pereira de Arruda

    2004-12-01

    Full Text Available Este trabalho traz a caracterização morfológica de elementos de vaso e WBT ("traqueíde com espessamento largo" de raiz e cladódio de cinco táxons de Cactaceae (Harrisia adscendens (Gurke Britton & Rose, Melocactus × horridus Wedermann Notizbl., M. zehntneri (Britton & Rose Luetzelb., Tacinga inamoena (Schumann N.P. Taylor & Stuppy e T. palmadora (Britton & Rose N.P. Taylor & Stuppy ocorrentes em um trecho de caatinga do Estado de Pernambuco, Brasil. Os elementos de vaso observados tanto nas raízes quanto nos cladódios apresentam-se praticamente idênticos entre os táxons estudados, sendo observadas pontoações alternas, opostas e escalariformes, além de placas de perfuração simples transversal e obliqua. As traqueídes (WBT foram registradas apenas nos cladódios de quatro dos táxons estudados, exceto em Harrisia adscendens. As WBTs apresentam espessamento anelar ou helicoidal e o espessamento misto ocorre apenas em Melocactus. Os elementos traqueais foram medidos, mostrando que em Melocactus tanto a raiz como o cladódio, apresentam elementos de vaso longos e quanto as WBT essas são maiores no cladódio de Melocactus.This work brings a morphological characterization of traqueary elements (vessels and tracheids in root and cladode of five taxons of Cactaceae (Harrisia adscendens (Gurke Britton & Rose, Melocactus × horridus Wedermann Notizbl., M. zehntneri (Britton & Rose Luetzelb., Tacinga inamoena (Schumann N.P. Taylor & Stuppy and T. palmadora (Britton & Rose N.P. Taylor & Stuppy occurent in the caatinga of Pernambuco State, Brazil. The vessels elements observed in the roots and cladodes seem almost same among the studied taxons, were observed alternate, opposite and scalariform pitting, and simple perforation plate transversal or oblique. The tracheids (WBT were exclusively noted in the cladodes of four studied taxons, except Harrisia adscendens. The WBTs with annular and helical thickening are present in all taxons and the

  16. The Key Technique of Manufacture of Dense Chromium Sesquioxide Refractories

    Institute of Scientific and Technical Information of China (English)

    LIMaoqiang; ZHANGShuying; 等

    1998-01-01

    Dense chromium sesquioxide refractories have widely been used in the kilns for making alkai-free and anti-alkali glass fibers due to their excellent re-sistance to molten glasses.Densifications of chromium sesquioxide during sintering can be blocked by evaporation of chromium trioxide derived from oxidation at high temperature,In this paper the mech-anism of sintering chromium oxide and the process-ing technique for making dense chromium sesquiox-ide refractories are discussed .A process in laboratory scale for making dense chromium sesquioxide bricks is demonstrated.

  17. Dense deposit disease in a child with febrile sore throat

    Directory of Open Access Journals (Sweden)

    Giovanni Conti

    2017-01-01

    Full Text Available Dense deposit disease or membranoproliferative glomerulonephritis type II is a rare glomerulopathy characterized on renal biopsy by deposition of abnormal electron-dense material in the glomerular basement membrane. The pathophysiologic basis is uncontrolled systemic activation of the alternate pathway of the complement cascade. C3 nephritic factor, an autoantibody directed against the C3 convertase of the alternate pathway, plays a key role. In some patients, complement gene mutations have been identified. We report the case of a child who had persistent microscopic hematuria, proteinuria, and hypocomplementemia C3 for over 2 months. Renal biopsy confirmed the diagnosis of dense deposit disease.

  18. Variación geográfica del zorro Lycalopex culpaeus (Mammalia, Canidae en Chile: implicaciones taxonómicas

    Directory of Open Access Journals (Sweden)

    Jonathan A Guzmán

    2009-06-01

    Full Text Available Mediante análisis cualitativos y cuantitativos, se estudió la variación geográfica del cráneo de Lycalopex culpaeus en Chile (desde Tarapacá a la islas australes, y de algunas poblaciones argentinas. En dicha distribución se reconocen cinco de las seis subespecies del culpeo. Los resultados muestran dos grupos morfológicos geográficamente segregados; los mismos se diferencian principalmente por atributos morfométricos, y secundariamente por caracteres cualitativos. individuos del norte chileno (Tarapacá y Antofagasta presentan cráneos pequeños, poco desarrollados, hocico levemente corto, ausencia de cresta interparietal y una tenue zona sagital "liriforme". Por otra parte, los individuos del noroeste y centro argentino, centro sur chileno, Patagonia e islas australes (islas de Tierra del Fuego y Hoste (grupo B, no muestran diferencias significativas en su morfometría dento-craneal. En el grupo B destacó una fuerte cresta interparietal y zona sagital, hocicos prolongados y cráneos de mayor tamaño que los del norte chileno. Nuestros resultados coinciden con estudios de patrones de variación en el ADN mitocondrial de cánidos de Chile. Por lo tanto, se propone mantener el nombre L. c. andinus para las poblaciones del norte de Chile y sinonimizar los taxones L. c. magellanicus, L. c. lycoides y L. c. smithersi bajo la forma L. c. culpaeus.Geographic variation of the fox Lycalopex culpaeus (Mammalia, Canidae in Chile: taxonomic implications. We studied the geographic variation of skulls of Lycalopex culpaeus using qualitative and quantative analyses. The sampling area covered Chile, from its northern portion, to Tierra del Fuego and the neighbouring Hoste island, as well as part of Argentina. Five subespecies are currently recognized from this large area. We found two morphotypes that are segregated geographically. Both groups mostly differ by morphometric attributes, followed by qualitative features. Specimens from northern Chile

  19. SUPPORTED DENSE CERAMIC MEMBRANES FOR OXYGEN SEPARATION

    Energy Technology Data Exchange (ETDEWEB)

    Timothy L. Ward

    2002-07-01

    Mixed-conducting ceramics have the ability to conduct oxygen with perfect selectivity at elevated temperatures, making them extremely attractive as membrane materials for oxygen separation and membrane reactor applications. While the conductivity of these materials can be quite high at elevated temperatures (typically 800-1000 C), much higher oxygen fluxes, or, alternatively, equivalent fluxes at lower temperatures, could be provided by supported thin or thick film membrane layers. Based on that motivation, the objective of this project was to explore the use of ultrafine aerosol-derived powder of a mixed-conducting ceramic material for fabrication of supported thick-film dense membranes. The project focused on the mixed-conducting ceramic composition SrCo{sub 0.5}FeO{sub x} (SCFO) because of the desirable permeability and stability of that material, as reported in the literature. Appropriate conditions to produce the submicron SrCo{sub 0.5}FeO{sub x} powder using aerosol pyrolysis were determined. Porous supports of the same composition were produced by partial sintering of a commercially obtained powder that possessed significantly larger particle size than the aerosol-derived powder. The effects of sintering conditions (temperature, atmosphere) on the porosity and microstructure of the porous discs were studied, and a standard support fabrication procedure was adopted. Subsequently, a variety of paste and slurry formulations were explored utilizing the aerosol-derived SCFO powder. These formulations were applied to the porous SCFO support by a doctor blade or spin coating procedure. Sintering of the supported membrane layer was then conducted, and additional layers were deposited and sintered in some cases. The primary characterization methods were X-ray diffraction and scanning electron microscopy, and room-temperature nitrogen permeation was used to assess defect status of the membranes.We found that non-aqueous paste/slurry formulations incorporating

  20. Fermion mass and the pressure of dense matter

    CERN Document Server

    Fraga, Eduardo S; 10.1063/1.2714447

    2008-01-01

    We consider a simple toy model to study the effects of finite fermion masses on the pressure of cold and dense matter, with possible applications in the physics of condensates in the core of neutron stars and color superconductivity.

  1. Fabrication, Properties and Applications of Dense Hydroxyapatite: A Review

    Directory of Open Access Journals (Sweden)

    Mythili Prakasam

    2015-12-01

    Full Text Available In the last five decades, there have been vast advances in the field of biomaterials, including ceramics, glasses, glass-ceramics and metal alloys. Dense and porous ceramics have been widely used for various biomedical applications. Current applications of bioceramics include bone grafts, spinal fusion, bone repairs, bone fillers, maxillofacial reconstruction, etc. Amongst the various calcium phosphate compositions, hydroxyapatite, which has a composition similar to human bone, has attracted wide interest. Much emphasis is given to tissue engineering, both in porous and dense ceramic forms. The current review focusses on the various applications of dense hydroxyapatite and other dense biomaterials on the aspects of transparency and the mechanical and electrical behavior. Prospective future applications, established along the aforesaid applications of hydroxyapatite, appear to be promising regarding bone bonding, advanced medical treatment methods, improvement of the mechanical strength of artificial bone grafts and better in vitro/in vivo methodologies to afford more particular outcomes.

  2. Densely crosslinked polycarbosiloxanes .2. Thermal and mechanical properties

    NARCIS (Netherlands)

    Flipsen, T.A C; Derks, R.; van der Vegt, H.A.; Stenekes, R.; Pennings, A.J; Hadziioannou, G

    1997-01-01

    The thermal and mechanical properties of two densely crosslinked polycarbosiloxane systems were investigated in relation to the molecular structure. The networks were prepared from functional branched prepolymers and crosslinked via a hydrosilylation curing reaction. The prepolymers having only viny

  3. RESEARCH ON DENSITY STABILITY OF AIR DENSE MEDIUM FLUIDIZED BED

    Institute of Scientific and Technical Information of China (English)

    骆振福; 陈清如

    1994-01-01

    In this papcr on thc basis of studying the distribution of fine coal in the dense medium fluidized bed, the optimal size range of fine coal, which constitutes a fluidized bed together with the dense medium, has been found. In the separating process the fine coal will continuously accumulate in fluidized bed, thus inevitably reducing the density of the bed. In order to keep bed density stable, the authors adopted such measures as split-flow of used medium and complement of fresh dense medium. The experiment results in both lab and pilot systems of the air-dense medium fluidized bed show that these measures are effective and satisfactory. Then authors also have established some relative dynamic mathematical models for it.

  4. Automated Motion Estimation for 2D Cine DENSE MRI

    Science.gov (United States)

    Gilliam, Andrew D.; Epstein, Frederick H.

    2013-01-01

    Cine displacement encoding with stimulated echoes (DENSE) is a magnetic resonance (MR) method that directly encodes tissue displacement into MR phase images. This technique has successfully interrogated many forms of tissue motion, but is most commonly used to evaluate cardiac mechanics. Currently, motion analysis from cine DENSE images requires manually delineated anatomical structures. An automated analysis would improve measurement throughput, simplify data interpretation, and potentially access important physiological information during the MR exam. In this article, we present the first fully automated solution for the estimation of tissue motion and strain from 2D cine DENSE data. Results using both simulated and human cardiac cine DENSE data indicate good agreement between the automated algorithm and the standard semi-manual analysis method. PMID:22575669

  5. A Green Method for Processing Polymers using Dense Gas Technology

    Directory of Open Access Journals (Sweden)

    Roshan B. Yoganathan

    2010-05-01

    Full Text Available Dense CO2 can be used as an environmentally-benign polymer processing medium because of its liquid-like densities and gas-like mass transfer properties.In this work, polymer bio-blends of polycarbonate (PC, a biocompatible polymer, and polycaprolactone (PCL, a biodegradable polymer were prepared. Dense CO2 was used as a reaction medium for the melt-phase PC polymerization in the presence of dense CO2-swollen PCL particles and this method was used to prepare porous PC/PCL blends. To extend the applicability of dense CO2 to the biomedical industry and polymer blend processing, the impregnation of ibuprofen into the blend was conducted and subsequent dissolution characteristics were observed.

  6. Complete multiple round quantum dense coding with quantum logical network

    Institute of Scientific and Technical Information of China (English)

    LI ChunYan; LI XiHan; DENG FuGuo; ZHOU Ping; ZHOU HongYu

    2007-01-01

    We present a complete multiple round quantum dense coding scheme for improving the source capacity of that introduced recently by Zhang et al. The receiver resorts to two qubits for storing the four local unitary operations in each round.

  7. Whale sharks target dense prey patches of sergestid shrimp off Tanzania

    KAUST Repository

    Rohner, C. A.

    2015-03-17

    Large planktivores require high-density prey patches to make feeding energetically viable. This is a major challenge for species living in tropical and subtropical seas, such as whale sharks Rhincodon typus. Here, we characterize zooplankton biomass, size structure and taxonomic composition from whale shark feeding events and background samples at Mafia Island, Tanzania. The majority of whale sharks were feeding (73%, 380 of 524 observations), with the most common behaviour being active surface feeding (87%). We used 20 samples collected from immediately adjacent to feeding sharks and an additional 202 background samples for comparison to show that plankton biomass was ∼10 times higher in patches where whale sharks were feeding (25 vs. 2.6 mg m-3). Taxonomic analyses of samples showed that the large sergestid Lucifer hanseni (∼10 mm) dominated while sharks were feeding, accounting for ∼50% of identified items, while copepods (<2 mm) dominated background samples. The size structure was skewed towards larger animals representative of L.hanseni in feeding samples. Thus, whale sharks at Mafia Island target patches of dense, large, zooplankton dominated by sergestids. Large planktivores, such as whale sharks, which generally inhabit warm oligotrophic waters, aggregate in areas where they can feed on dense prey to obtain sufficient energy. © 2015 © The Author 2015. Published by Oxford University Press. All rights reserved.

  8. Neutrinos and Nucleosynthesis in Hot and Dense Matter

    Energy Technology Data Exchange (ETDEWEB)

    Fuller, George [Univ. of California, San Diego, CA (United States)

    2016-01-14

    The Topical Collaboration for Neutrinos and Nucleosynthesis in Hot and Dense matter brought together researchers from a variety of nuclear science specialties and a number of institutions to address nuclear physics and neutrino physics problems associated with dense matter and the origin of the elements. See attached final technical reports for (1) the UCSD award and (2) a copy of the report for the whole TC

  9. MICROSPRAY SIMULATION OF DENSE GAS DISPERSION IN COMPLEX TERRAIN

    OpenAIRE

    Anfossi, D.; Tinarelli, G.; S. Trini Castelli; Commanay, J.; Nibart, M

    2008-01-01

    Abstract: An extended validation of the new Lagrangian particle model MicroSpray version for dense gas simulation is proposed. MicroSpray simulates the dense gas dispersion in situations characterized by the presence of buildings, other obstacles, complex terrain, and possible occurrence of low wind speed conditions. Its performances are compared to a chlorine railway accident (Macdona), to a field experiment (Kit Fox) and to an atmospheric CFD model.

  10. Measurement of Electron-Ion Relaxation in Warm Dense Copper

    Science.gov (United States)

    Cho, B. I.; Ogitsu, T.; Engelhorn, K.; Correa, A. A.; Ping, Y.; Lee, J. W.; Bae, L. J.; Prendergast, D.; Falcone, R. W.; Heimann, P. A.

    2016-01-01

    Experimental investigation of electron-ion coupling and electron heat capacity of copper in warm and dense states are presented. From time-resolved x-ray absorption spectroscopy, the temporal evolution of electron temperature is obtained for non-equilibrium warm dense copper heated by an intense femtosecond laser pulse. Electron heat capacity and electron-ion coupling are inferred from the initial electron temperature and its decrease over 10 ps. Data are compared with various theoretical models.

  11. Relating quantum discord with the quantum dense coding capacity

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Xin; Qiu, Liang, E-mail: lqiu@cumt.edu.cn; Li, Song; Zhang, Chi [China University of Mining and Technology, School of Sciences (China); Ye, Bin [China University of Mining and Technology, School of Information and Electrical Engineering (China)

    2015-01-15

    We establish the relations between quantum discord and the quantum dense coding capacity in (n + 1)-particle quantum states. A necessary condition for the vanishing discord monogamy score is given. We also find that the loss of quantum dense coding capacity due to decoherence is bounded below by the sum of quantum discord. When these results are restricted to three-particle quantum states, some complementarity relations are obtained.

  12. What data determine whether a plant taxon is distinct enough to merit legal protection? A case study of Sedum integrifolium (Crassulaceae).

    Science.gov (United States)

    Olfelt, J P; Furnier, G R; Luby, J J

    2001-03-01

    Measures of molecular and morphological genetic variation are often used to set conservation priorities and design management strategies for plant taxa. Evaluated together they can give insights into a taxon's evolutionary status that neither data type alone can achieve. We investigated the distinctness and variability of Sedum integrifolium ssp. leedyi, a federally and state-listed taxon, from its conspecific relatives using 33 random amplified polymorphic DNA (RAPD) markers (253 plants) and 37 morphological characters from 1308 common-garden-grown plants. We included S. integrifolium ssp. leedyi (four populations), its conspecific relatives (11 populations), and S. rosea and S. rhodanthum populations in our study. The morphological and molecular data correspond in showing that S. integrifolium ssp. leedyi populations are highly distinct. However, the data sets differ in their estimates of the relatedness of some S. integrifolium ssp. leedyi populations and in the percentage variation detected due to differences among them (25 and 9-13% for the molecular and morphological data, respectively) suggesting little gene flow among populations and some differentiation, possibly from selective pressures. Given our data, we recommend that S. integrifolium ssp. leedyi merits protection under the U.S. Endangered Species Act and that its populations be managed as distinct units.

  13. Estudios sobre el género Prunas (Rosaceae en el Neotrópico: novedades taxonómicas y nomenclaturales para Colombia

    Directory of Open Access Journals (Sweden)

    Pérez-Zabala, Jorge A.

    2007-12-01

    Full Text Available As a part of the studies on neotropical Prunus, initiated with the taxonomic revision for Colombia, three new species are presented with complete descriptions and comments on taxonomy, chorology and conservation (P. antioquensis, P. littlei, and P. megacarpa. In addition, five taxa, whose description is based on material from Colombia, have been reduced to synonyms (P. betancurii, P. carolinae, P. ernestii, P. recurviflora and P. villegasiana and two lectotypes and one neotype are designated. For the newly cicumscribed species herein, diagnostic characters are annotated, synonyms are discussed and their geographical distribution commented upon.Como parte de los estudios del género Prunas para el Neotrópico iniciados con la revisión taxonómica para Colombia, se presentan descripciones completas, comentarios taxonómicos, corológicos y sobre aspectos de conservación de tres nuevas especies (P. antioquensis, P. littlei y P. megacarpa. Se reducen además a sinonimia cinco táxones descritos con base en material del país (P. betancurii, P. carolinae, P. ernestii, P. recurviflora y P. villegasiana y se designan dos lectótipos y un neótipo. Para las especies cuya circunscripción es precisada, se anotan los caracteres diagnósticos, se justifica la sinonimia y se comenta su distribución geográfica.

  14. Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens.

    Science.gov (United States)

    Kilian, Norbert; Henning, Tilo; Plitzner, Patrick; Müller, Andreas; Güntsch, Anton; Stöver, Ben C; Müller, Kai F; Berendsohn, Walter G; Borsch, Thomas

    2015-01-01

    We present the model and implementation of a workflow that blazes a trail in systematic biology for the re-usability of character data (data on any kind of characters of pheno- and genotypes of organisms) and their additivity from specimen to taxon level. We take into account that any taxon characterization is based on a limited set of sampled individuals and characters, and that consequently any new individual and any new character may affect the recognition of biological entities and/or the subsequent delimitation and characterization of a taxon. Taxon concepts thus frequently change during the knowledge generation process in systematic biology. Structured character data are therefore not only needed for the knowledge generation process but also for easily adapting characterizations of taxa. We aim to facilitate the construction and reproducibility of taxon characterizations from structured character data of changing sample sets by establishing a stable and unambiguous association between each sampled individual and the data processed from it. Our workflow implementation uses the European Distributed Institute of Taxonomy Platform, a comprehensive taxonomic data management and publication environment to: (i) establish a reproducible connection between sampled individuals and all samples derived from them; (ii) stably link sample-based character data with the metadata of the respective samples; (iii) record and store structured specimen-based character data in formats allowing data exchange; (iv) reversibly assign sample metadata and character datasets to taxa in an editable classification and display them and (v) organize data exchange via standard exchange formats and enable the link between the character datasets and samples in research collections, ensuring high visibility and instant re-usability of the data. The workflow implemented will contribute to organizing the interface between phylogenetic analysis and revisionary taxonomic or monographic work. http

  15. Dense, unspecific connectivity of neocortical parvalbumin-positive interneurons: a canonical microcircuit for inhibition?

    Science.gov (United States)

    Packer, Adam M; Yuste, Rafael

    2011-09-14

    GABAergic interneurons play a major role in the function of the mammalian neocortex, but their circuit connectivity is still poorly understood. We used two-photon RuBi-Glutamate uncaging to optically map how the largest population of cortical interneurons, the parvalbumin-positive cells (PV+), are connected to pyramidal cells (PCs) in mouse neocortex. We found locally dense connectivity from PV+ interneurons onto PCs across cortical areas and layers. In many experiments, all nearby PV+ cells were connected to every local PC sampled. In agreement with this, we found no evidence for connection specificity, as PV+ interneurons contacted PC pairs similarly regardless of whether they were synaptically connected or not. We conclude that the microcircuit architecture for PV+ interneurons, and probably neocortical inhibition in general, is an unspecific, densely homogenous matrix covering all nearby pyramidal cells.

  16. Dense 3D Map Construction for Indoor Search and Rescue

    DEFF Research Database (Denmark)

    Ellekilde, Lars-Peter; Huang, Shoudong; Miró, Jaime Valls

    2007-01-01

    The main contribution of this paper is a new simultaneous localization and mapping  SLAM algorithm for building dense three-dimensional maps using information ac- quired from a range imager and a conventional camera, for robotic search and rescue in unstructured indoor environments. A key challen...... invariant feature transformation SIFT feature detection and matching, random sampling consensus RANSAC , and least square 3D point sets ?tting. Experimental results are provided to demonstrate the effectiveness of the techniques developed.......The main contribution of this paper is a new simultaneous localization and mapping  SLAM algorithm for building dense three-dimensional maps using information ac- quired from a range imager and a conventional camera, for robotic search and rescue in unstructured indoor environments. A key challenge...

  17. Evidence of Evolution in the Dense Cores in Massive Star Forming Regions

    Institute of Scientific and Technical Information of China (English)

    Jian-Jun Zhou; Jarken Esimbek; Ji-Xian Sun; Bing-Gang Ju; Jing-Jiang Sun

    2005-01-01

    The excitation of H2O masers usually needs very high density gas,hence it can serve as a marker of dense gas in HⅡ region. We selected a sample of H2O maser sources from Plume et al. (four with, and four without detected CS(J = 7 - 6) emission), and observed them in 13CO(J=1-0) and C18O (J=1-0). C18O (J=1-0) emission was detected only in three of the sources with detected CS(J=7-6) emission. An analysis combined with some data in the literature suggests that these dense cores may be located at different evolutionary stages. Multi-line observation study may provide us clues on the evolution of massive star forming regions and the massive stars themselves.

  18. Export of terrigenous organic carbon along submarine canyons driven by dense shelf water cascading

    Science.gov (United States)

    Tesi, T.; Puig, P.; Goni, M.; Canals, M.; Langone, L.; Palanques, A.; Miserocchi, S.; Heussner, S.; Trincardi, F.; Calafat, A.; Turchetto, M.; Fabres, J.; Durrieu de Madron, X.; Boldrin, A.

    2008-12-01

    At current highstand in sea level, shelves are considered major sites of terrigenous organic carbon (OCterr) accumulation with relatively little connectivity to the ocean interior. In recent years, the process of dense water cascading from the continental shelf, which occurs in numerous places around the world, has been suggested as carrier for OCterr to the deep ocean. The land-locked Mediterranean Sea is characterized by intense and recurrent cascades of dense shelf water. In winter, cold and dry winds cause the formation of dense water over the shelf that may overflow it and travel down to the outer margin and basin. Moored instruments were deployed in the canyons of the Gulf of Lion (France-Spain) and the Adriatic Sea (Italy) to intercept particulate material escaping the shelf and to investigate hydrodynamic and physical properties of the water column. Surface sediments along the shelves were also sampled to evaluate their contribution to the particle fluxes. The relative fractions of autochthonous and advected OC in sediment trap samples were investigated using biogeochemical proxies including alkaline CuO oxidation products (lignin phenols, dicarboxylic acids, and fatty acids), radiocarbon measurements (Ä14C), and elemental and carbon stable isotope (ä13C) compositions. Lignin-derived CuO products were a powerful biogeochemical tool that allowed us to identify the provenance of the material from the continental margin and to assess the amount of OCterr transferred across the slope in both Mediterranean regions. The results indicate that the composition of OC escaping the shelf through submarine canyons depends on the geomorphological setting. At the present sea level stage, cascading on a broad shelf limits the transport of OCterr, promoting instead the down-slope export of material accumulated in the mid- and outer-shelf. In contrast, cascade events on narrow shelves lead to the efficient export of OCterr from shallower regions of the margin along with

  19. The influence of socioeconomic factors and family context on energy-dense food consumption among 2-year-old children.

    Science.gov (United States)

    Vilela, S; Oliveira, A; Pinto, E; Moreira, P; Barros, H; Lopes, C

    2015-01-01

    Adverse effect on health has been described for a high consumption of energy-dense food, among children and adults. Limited research has been performed among pre-school children. The objective of this study is to evaluate the association between socioeconomic characteristics and family structure, and the consumption of energy-dense food among 2-year-old children. The study sample includes 808 2-year-old children from the Portuguese birth cohort Generation XXI with information on food consumption. Data were obtained from questionnaires administered by interviewers to parents. Based on a food frequency questionnaire, four groups of energy-dense food were defined: soft drinks (sweetened drinks), sweets (chocolate and candies), cakes (creamy and not creamy cakes and sweet pastry) and salty snacks (crisps, pizza and burger). Multinomial logistic regression models (odds ratio and 95% confidence intervals) were fitted to estimate the associations. Intakes of energy-dense food were much lower than in similar aged children in other Westernized countries. Maternal age and education, grandparents' education, household income and maternal occupation were inversely associated with the consumption of energy-dense food, particularly soft drinks and sweets. Children with older siblings were more likely to have a daily consumption of any energy-dense food. Few significant associations were found between socioeconomic characteristics and family structure and consumption of cakes and sweets less than once a week. High socioeconomic characteristics were associated with lower consumption of energy-dense food by 2-year-old children, mainly soft drinks and sweets. This influence is not only from parents' background but also from the preceding generations.

  20. Inference of population structure using dense haplotype data.

    Directory of Open Access Journals (Sweden)

    Daniel John Lawson

    2012-01-01

    Full Text Available The advent of genome-wide dense variation data provides an opportunity to investigate ancestry in unprecedented detail, but presents new statistical challenges. We propose a novel inference framework that aims to efficiently capture information on population structure provided by patterns of haplotype similarity. Each individual in a sample is considered in turn as a recipient, whose chromosomes are reconstructed using chunks of DNA donated by the other individuals. Results of this "chromosome painting" can be summarized as a "coancestry matrix," which directly reveals key information about ancestral relationships among individuals. If markers are viewed as independent, we show that this matrix almost completely captures the information used by both standard Principal Components Analysis (PCA and model-based approaches such as STRUCTURE in a unified manner. Furthermore, when markers are in linkage disequilibrium, the matrix combines information across successive markers to increase the ability to discern fine-scale population structure using PCA. In parallel, we have developed an efficient model-based approach to identify discrete populations using this matrix, which offers advantages over PCA in terms of interpretability and over existing clustering algorithms in terms of speed, number of separable populations, and sensitivity to subtle population structure. We analyse Human Genome Diversity Panel data for 938 individuals and 641,000 markers, and we identify 226 populations reflecting differences on continental, regional, local, and family scales. We present multiple lines of evidence that, while many methods capture similar information among strongly differentiated groups, more subtle population structure in human populations is consistently present at a much finer level than currently available geographic labels and is only captured by the haplotype-based approach. The software used for this article, ChromoPainter and fineSTRUCTURE, is

  1. Single-shot mega-electronvolt ultrafast electron diffraction for structure dynamic studies of warm dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Mo, M. Z., E-mail: mmo09@slac.stanford.edu; Shen, X.; Chen, Z.; Li, R. K.; Dunning, M.; Zheng, Q.; Weathersby, S. P.; Reid, A. H.; Coffee, R.; Makasyuk, I.; Edstrom, S.; McCormick, D.; Jobe, K.; Hast, C.; Glenzer, S. H.; Wang, X. [SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025 (United States); Sokolowski-Tinten, K. [Faculty of Physics and Centre for Nanointegration Duisburg-Essen, University of Duisburg-Essen, Lotharstrasse 1, D-47048 Duisburg (Germany)

    2016-11-15

    We have developed a single-shot mega-electronvolt ultrafast-electron-diffraction system to measure the structural dynamics of warm dense matter. The electron probe in this system is featured by a kinetic energy of 3.2 MeV and a total charge of 20 fC, with the FWHM pulse duration and spot size at sample of 350 fs and 120 μm respectively. We demonstrate its unique capability by visualizing the atomic structural changes of warm dense gold formed from a laser-excited 35-nm freestanding single-crystal gold foil. The temporal evolution of the Bragg peak intensity and of the liquid signal during solid-liquid phase transition are quantitatively determined. This experimental capability opens up an exciting opportunity to unravel the atomic dynamics of structural phase transitions in warm dense matter regime.

  2. Building Change Detection from Historical Aerial Photographs Using Dense Image Matching and Object-Based Image Analysis

    Directory of Open Access Journals (Sweden)

    Stephan Nebiker

    2014-09-01

    Full Text Available A successful application of dense image matching algorithms to historical aerial photographs would offer a great potential for detailed reconstructions of historical landscapes in three dimensions, allowing for the efficient monitoring of various landscape changes over the last 50+ years. In this paper we propose the combination of image-based dense DSM (digital surface model reconstruction from historical aerial imagery with object-based image analysis for the detection of individual buildings and the subsequent analysis of settlement change. Our proposed methodology is evaluated using historical greyscale and color aerial photographs and numerous reference data sets of Andermatt, a historical town and tourism destination in the Swiss Alps. In our paper, we first investigate the DSM generation performance of different sparse and dense image matching algorithms. They demonstrate the superiority of dense matching algorithms and of the resulting historical DSMs with root mean square error values of 1–1.5 GSD (ground sampling distance and yield point densities comparable to those of recent airborne LiDAR DSMs. In the second part, we present an object-based building detection workflow mainly based on the historical DSMs and the historical imagery itself. Additional inputs are a current digital terrain model and a cadastral building database. For the case of densely matched DSMs, the evaluation yields building detection rates of 92% for grayscale and 94% for color imagery.

  3. The JCMT dense gas survey in dense molecular clouds: an HCO+/HCN comparison

    Science.gov (United States)

    Walker-Smith, Samantha; Richer, John; Buckle, Jane; Salji, Carl; Hatchell, Jennifer; Drabek, Emily

    2013-07-01

    We present the results of a large-scale survey of the very dense molecular gas in Perseus, Orion A and B, Serpens and Ophiuchus using HCO+ and HCN (J = 4 - 3) transitions. We have used this emission to trace the structure and kinematics of gas at the extremely high densities found in pre- and protostellar cores; as well as tracing outflows powered by these early star-forming cores. We present a comparison of the HCO+/HCN data, highlighting regions where there is a marked discrepancy in the spectra of the two emission lines. This is particularly noticeable in some of the more powerful outflows driven by Class 0 sources, where the HCN is greatly enhanced in the linewings in comparison with HCO+. We also use the HCO+ to positively identify protostellar outflows and their driving sources. We present a statistical analysis of the outflow properties that we derive from this tracer. We show that our results are comparable to those obtained from similar outflow analyses using 12CO.

  4. Experimental Studies of the Transport Parameters of Warm Dense Matter

    Energy Technology Data Exchange (ETDEWEB)

    Chouffani, Khalid [Idaho State Univ., Pocatello, ID (United States)

    2014-12-01

    There is a need to establish fundamental properties of matter and energy under extreme physical conditions. Although high energy density physics (HEDP) research spans a wide range of plasma conditions, there is one unifying regime that is of particular importance and complexity: that of warm dense matter, the transitional state between solid state condensed matter and energetic plasmas. Most laboratory experimental conditions, including inertial confinement implosion, fall into this regime. Because all aspects of laboratory-created high-energy-density plasmas transition through the warm dense matter regime, understanding the fundamental properties to determine how matter and energy interact in this regime is an important aspect of major research efforts in HEDP. Improved understanding of warm dense matter would have significant and wide-ranging impact on HEDP science, from helping to explain wire initiation studies on the Sandia Z machine to increasing the predictive power of inertial confinement fusion modeling. The central goal or objective of our proposed research is to experimentally determine the electrical resistivity, temperature, density, and average ionization state of a variety of materials in the warm dense matter regime, without the use of theoretical calculations. Since the lack of an accurate energy of state (EOS) model is primarily due to the lack of experimental data, we propose an experimental study of the transport coefficients of warm dense matter.

  5. Dense Molecular Gas: A Sensitive Probe of Stellar Feedback Models

    CERN Document Server

    Hopkins, Philip F; Murray, Norman; Quataert, Eliot

    2012-01-01

    We show that the mass fraction of GMC gas (n>100 cm^-3) in dense (n>>10^4 cm^-3) star-forming clumps, observable in dense molecular tracers (L_HCN/L_CO(1-0)), is a sensitive probe of the strength and mechanism(s) of stellar feedback. Using high-resolution galaxy-scale simulations with pc-scale resolution and explicit models for feedback from radiation pressure, photoionization heating, stellar winds, and supernovae (SNe), we make predictions for the dense molecular gas tracers as a function of GMC and galaxy properties and the efficiency of stellar feedback. In models with weak/no feedback, much of the mass in GMCs collapses into dense sub-units, predicting L_HCN/L_CO(1-0) ratios order-of-magnitude larger than observed. By contrast, models with feedback properties taken directly from stellar evolution calculations predict dense gas tracers in good agreement with observations. Changing the strength or timing of SNe tends to move systems along, rather than off, the L_HCN-L_CO relation (because SNe heat lower-de...

  6. The Neutron Star Mass-Radius Relation and the Equation of State of Dense Matter

    CERN Document Server

    Steiner, Andrew W; Brown, Edward F

    2012-01-01

    The equation of state (EOS) of dense matter has been a long-sought goal of nuclear physics. Equations of state generate unique mass versus radius (M-R) relations for neutron stars, the ultra-dense remnants of stellar evolution. In this work, we determine the neutron star mass-radius relation and, based on recent observations of both transiently accreting and bursting sources, we show that the radius of a 1.4 solar mass neutron star lies between 10.4 and 12.9 km, independent of assumptions about the composition of the core. We show, for the first time, that these constraints remain valid upon removal from our sample of the most extreme transient sources or of the entire set of bursting sources; our constraints also apply even if deconfined quark matter exists in the neutron star core. Our results significantly constrain the dense matter EOS and are, furthermore, consistent with constraints from both heavy-ion collisions and theoretical studies of neutron matter. We predict a relatively weak dependence of the s...

  7. Dense Molecular Gas and H2O Maser Emission in Galaxies

    Indian Academy of Sciences (India)

    F. Huang; J. S. Zhang; R. M. Li; H. K. Li

    2014-09-01

    Extragalactic H2O masers have been found in dense gas circumstance in off-nuclear star formation regions or within parsecs of Active Galactic Nuclei (AGNs). HCN molecular (one of the best dense gas tracers) Emission has been detected in more than 60 galaxies. For HCN-detected galaxy sample, the relation of maser and gas emission was investigated here to identify physical observable properties that differentiate maser and non-maser galaxies. Our analysis results show that there is no significant difference on the infrared and gas emission between maser galaxies and galaxies without maser detection. For maser host HCN-galaxies, maser luminosity is found to be correlated to CO luminosity (a proxy of the total molecular gas) and HCN luminosity, i.e., kilomasers (H2O < 10⊙) with low maser luminosity having low gas emission luminosity, with respect to megamasers (H2O > 10⊙). For normalized maser and HCN luminosity (for removing distance effect), the correlation is still apparent. However, for normalized maser and CO luminosity, the correlation disappeared completely. Thus one proposition that the amount of dense molecular gas should be a good tracer of H2O maser emission can be made.

  8. Experimental measurements of the collisional absorption of XUV radiation in warm dense aluminium

    Science.gov (United States)

    Kettle, B.; Dzelzainis, T.; White, S.; Li, L.; Dromey, B.; Zepf, M.; Lewis, C. L. S.; Williams, G.; Künzel, S.; Fajardo, M.; Dacasa, H.; Zeitoun, Ph.; Rigby, A.; Gregori, G.; Spindloe, C.; Heathcote, R.; Riley, D.

    2016-08-01

    The collisional (or free-free) absorption of soft x rays in warm dense aluminium remains an unsolved problem. Competing descriptions of the process exist, two of which we compare to our experimental data here. One of these is based on a weak scattering model, another uses a corrected classical approach. These two models show distinctly different behaviors with temperature. Here we describe experimental evidence for the absorption of 26-eV photons in solid density warm aluminium (Te≈1 eV). Radiative x-ray heating from palladium-coated CH foils was used to create the warm dense aluminium samples and a laser-driven high-harmonic beam from an argon gas jet provided the probe. The results indicate little or no change in absorption upon heating. This behavior is in agreement with the prediction of the corrected classical approach, although there is not agreement in absolute absorption value. Verifying the correct absorption mechanism is decisive in providing a better understanding of the complex behavior of the warm dense state.

  9. Time-resolved X-ray Absorption Spectroscopy for Electron Transport Study in Warm Dense Gold

    Science.gov (United States)

    Lee, Jong-Won; Bae, Leejin; Engelhorn, Kyle; Heimann, Philip; Ping, Yuan; Barbrel, Ben; Fernandez, Amalia; Beckwith, Martha Anne; Cho, Byoung-Ick; GIST Team; IBS Team; LBNL Collaboration; SLAC Collaboration; LLNL Collaboration

    2015-11-01

    The warm dense Matter represents states of which the temperature is comparable to Fermi energy and ions are strongly coupled. One of the experimental techniques to create such state in the laboratory condition is the isochoric heating of thin metal foil with femtosecond laser pulses. This concept largely relies on the ballistic transport of electrons near the Fermi-level, which were mainly studied for the metals in ambient conditions. However, they were barely investigated in warm dense conditions. We present a time-resolved x-ray absorption spectroscopy measured for the Au/Cu dual layered sample. The front Au layer was isochorically heated with a femtosecond laser pulse, and the x-ray absorption changes around L-edge of Cu, which was attached on the backside of Au, was measured with a picosecond resolution. Time delays between the heating of the `front surface' of Au layer and the alternation of x-ray spectrum of Cu attached on the `rear surface' of Au indicate the energetic electron transport mechanism through Au in the warm dense conditions. IBS (IBS-R012-D1) and the NRF (No. 2013R1A1A1007084) of Korea.

  10. Serendipity at the Smithsonian: The 107-year journey of Rhipidocyrtus muiri Falin & Engel, new genus and species (Ripidiinae, Ripidiini), from jungle beast to valid taxon.

    Science.gov (United States)

    Falin, Zachary H; Engel, Michael S

    2014-01-01

    THE LONG AND TORTUOUS HISTORY OF AN ENIGMATIC AND RARE NEW GENUS AND SPECIES OF RIPIDIINE WEDGE BEETLE (RIPIPHORIDAE: Ripidiinae: Ripidiini) from Borneo is discussed and the taxon described and figured as Rhipidocyrtus muiri Falin & Engel, gen. n. and sp. n. The holotype male, and only known specimen, was collected 107 years ago in Borneo but subsequent to this it was transferred among early researchers in the early 1900s. The specimen was dissected and many portions slide mounted, but these were disassociated from the pinned body for more than a generation. A happenstance encounter led to the rediscovery and reassociation of the body and slide-mounted abdomen and other sclerites in 2011, and to its eventual description herein. Ripidiine diversity is briefly discussed and comparisons made between Rhipidocyrtus and other members of the subfamily.

  11. Serendipity at the Smithsonian: The 107-year journey of Rhipidocyrtus muiri Falin & Engel, new genus and species (Ripidiinae, Ripidiini, from jungle beast to valid taxon

    Directory of Open Access Journals (Sweden)

    Zachary Falin

    2014-07-01

    Full Text Available The long and tortuous history of an enigmatic and rare new genus and species of ripidiine wedge beetle (Ripiphoridae: Ripidiinae: Ripidiini from Borneo is discussed and the taxon described and figured as Rhipidocyrtus muiri Falin & Engel, gen. n. and sp. n. The holotype male, and only known specimen, was collected 107 years ago in Borneo but subsequent to this it was transferred among early researchers in the early 1900s. The specimen was dissected and many portions slide mounted, but these were disassociated from the pinned body for more than a generation. A happenstance encounter led to the rediscovery and reassociation of the body and slide-mounted abdomen and other sclerites in 2011, and to its eventual description herein. Ripidiine diversity is briefly discussed and comparisons made between Rhipidocyrtus and other members of the subfamily.

  12. Sample Preparation for Monolithic Refractories Part 1: Refractory Castables

    Institute of Scientific and Technical Information of China (English)

    Zhang Xiaohui; Peng Xigao

    2010-01-01

    @@ 1 Scope This standard specifies the definition and test methods of flowability of dense and insulating refractory castables,and moulding equipment,moulding methods,curing and drying conditions of castables samples.

  13. Local Crystalline Structure in an Amorphous Protein Dense Phase.

    Science.gov (United States)

    Greene, Daniel G; Modla, Shannon; Wagner, Norman J; Sandler, Stanley I; Lenhoff, Abraham M

    2015-10-20

    Proteins exhibit a variety of dense phases ranging from gels, aggregates, and precipitates to crystalline phases and dense liquids. Although the structure of the crystalline phase is known in atomistic detail, little attention has been paid to noncrystalline protein dense phases, and in many cases the structures of these phases are assumed to be fully amorphous. In this work, we used small-angle neutron scattering, electron microscopy, and electron tomography to measure the structure of ovalbumin precipitate particles salted out with ammonium sulfate. We found that the ovalbumin phase-separates into core-shell particles with a core radius of ∼2 μm and shell thickness of ∼0.5 μm. Within this shell region, nanostructures comprised of crystallites of ovalbumin self-assemble into a well-defined bicontinuous network with branches ∼12 nm thick. These results demonstrate that the protein gel is comprised in part of nanocrystalline protein.

  14. Infrared Opacities in Dense Atmospheres of Cool White Dwarf Stars

    CERN Document Server

    Kowalski, Piotr M; Dufour, Patrick

    2016-01-01

    Dense, He-rich atmospheres of cool white dwarfs represent a challenge to the modeling. This is because these atmospheres are constituted of a dense fluid in which strong multi-atomic interactions determine their physics and chemistry. Therefore, the ideal-gas-based description of absorption is no longer adequate, which makes the opacities of these atmospheres difficult to model. This is illustrated with severe problems in fitting the spectra of cool, He-rich stars. Good description of the infrared (IR) opacity is essential for proper assignment of the atmospheric parameters of these stars. Using methods of computational quantum chemistry we simulate the IR absorption of dense He/H media. We found a significant IR absorption from He atoms (He-He-He CIA opacity) and a strong pressure distortion of the H$_2$-He collision-induced absorption (CIA). We discuss the implication of these results for interpretation of the spectra of cool stars.

  15. Infrared Opacities in Dense Atmospheres of Cool White Dwarf Stars

    Science.gov (United States)

    Kowalski, P. M.; Blouin, S.; Dufour, P.

    2017-03-01

    Dense, He-rich atmospheres of cool white dwarfs represent a challenge to the modeling. This is because these atmospheres are constituted of a dense fluid in which strong multi-atomic interactions determine their physics and chemistry. Therefore, the ideal-gas-based description of absorption is no longer adequate, which makes the opacities of these atmospheres difficult to model. This is illustrated with severe problems in fitting the spectra of cool, He-rich stars. Good description of the infrared (IR) opacity is essential for proper assignment of the atmospheric parameters of these stars. Using methods of computational quantum chemistry we simulate the IR absorption of dense He/H media. We found a significant IR absorption from He atoms (He-He-He CIA opacity) and a strong pressure distortion of the H2-He collision-induced absorption (CIA). We discuss the implication of these results for the interpretation of the spectra of cool stars.

  16. Laboratory measurements of the resistivity of warm dense plasmas

    Science.gov (United States)

    Booth, Nicola; Robinson, Alex; Hakel, Peter; Gregori, Ginaluca; Rajeev, Pattathil; Woolsey, Nigel

    2015-11-01

    In this talk we will present a method for studying material resistivity in warm dense plasmas in the laboratory in which we interrogate the microphysics of the low energy electron distributions associated with an anisotropic return current. Through experimental measurements of the polarization of the Ly- α doublet emission (2s1 / 2-2p1 / 2,3/2 transitions) of sulphur, we determine the resistivity of a sulphur-doped plastic target heated to warm dense conditions by an ultra-intense laser at relativistic intensities, I ~ 5 ×1020 Wcm-2. We describe a method of exploiting classical x-ray scattering to separately measure both the π- and σ- polarizations of Ly-α1 spectral emission in a single shot. These measurements make it possible to explore fundamental material properties such as resistivity in warm and hot dense plasmas through matching plasma physics modelling to atomic physics calculations of the experimentally measured large, positive, polarisation.

  17. On the Evolution of the Dense Core Mass Function

    CERN Document Server

    Williams, Jonathan J Swift Jonathan P

    2008-01-01

    The mass distributions of dense cores in star-forming regions are measured to have a shape similar to the initial mass function of stars. This has been generally interpreted to mean that the constituent cores will form individual stars or stellar systems at a nearly constant star formation efficiency. This article presents a series of numerical experiments evolving distributions of dense cores into stars to quantify the effects of stellar multiplicity, global core fragmentation, and a varying star formation efficiency. We find that the different evolutionary schemes have an overall small effect on the shape of the resultant distribution of stars. Our results imply that at the current level of observational accuracy the comparison between the mass functions of dense cores and stars alone is insufficient to discern between different evolutionary models. Observations over a wide range of mass scales including the high or low-mass tails of these distributions have the largest potential for discerning between diff...

  18. DENSE: Displacement Encoding with Stimulated Echoes in Cardiac Functional MRI

    Science.gov (United States)

    Aletras, Anthony H.; Ding, Shujun; Balaban, Robert S.; Wen, Han

    1999-03-01

    Displacement encoding with stimulated echoes (DENSE) was developed for high-resolution myocardial displacement mapping. Pixel phase is modulated by myocardial displacement and data spatial resolution is limited only by pixel size. 2D displacement vector maps were generated for the systolic action in canines with 0.94 × 1.9 mm nominal in-plane resolution and 2.3 mm/π displacement encoding. A radial strain of 0.208 was measured across the free left ventricular wall over 105 ms during systole. DENSE displacement maps require small first-order gradient moments for encoding. DENSE magnitude images exhibit black-blood contrast which allows for better myocardial definition and reduced motion-related artifacts.

  19. Spatial and temporal segmented dense trajectories for gesture recognition

    Science.gov (United States)

    Yamada, Kaho; Yoshida, Takeshi; Sumi, Kazuhiko; Habe, Hitoshi; Mitsugami, Ikuhisa

    2017-03-01

    Recently, dense trajectories [1] have been shown to be a successful video representation for action recognition, and have demonstrated state-of-the-art results with a variety of datasets. However, if we apply these trajectories to gesture recognition, recognizing similar and fine-grained motions is problematic. In this paper, we propose a new method in which dense trajectories are calculated in segmented regions around detected human body parts. Spatial segmentation is achieved by body part detection [2]. Temporal segmentation is performed for a fixed number of video frames. The proposed method removes background video noise and can recognize similar and fine-grained motions. Only a few video datasets are available for gesture classification; therefore, we have constructed a new gesture dataset and evaluated the proposed method using this dataset. The experimental results show that the proposed method outperforms the original dense trajectories.

  20. Distributed quantum dense coding with two receivers in noisy environments

    Science.gov (United States)

    Das, Tamoghna; Prabhu, R.; SenDe, Aditi; Sen, Ujjwal

    2015-11-01

    We investigate the effect of noisy channels in a classical information transfer through a multipartite state which acts as a substrate for the distributed quantum dense coding protocol between several senders and two receivers. The situation is qualitatively different from the case with one or more senders and a single receiver. We obtain an upper bound on the multipartite capacity which is tightened in the case of the covariant noisy channel. We also establish a relation between the genuine multipartite entanglement of the shared state and the capacity of distributed dense coding using that state, both in the noiseless and the noisy scenarios. Specifically, we find that, in the case of multiple senders and two receivers, the corresponding generalized Greenberger-Horne-Zeilinger states possess higher dense coding capacities as compared to a significant fraction of pure states having the same multipartite entanglement.

  1. Value of Sonography in Screening Women with Dense Breasts in Mammography

    Directory of Open Access Journals (Sweden)

    Esmaeel Shokrollahi

    2010-05-01

    Full Text Available Breast cancer is one of the most common cancers in women and the main cause of death due to malignancy in women between 40-44 years of age.This cancer is responsible for 33% of all cancers in women and 20% of all deaths due to cancer in women."nMammography is the main modality for screening and diagnosis of breast lesions, but in dense breasts it has low sensitivity (about 48% with low possibility for visualization of mass lesions or calcifications, and this results in fading abnormal findings and increasing the risk of malignancy. This defect is compensated by ultrasonography."nSonography also elegantly shows hidden areas, which are covered by normal breast tissue in mammography, and also shows the pictures real time without overlap."nPresence of any palpable mass in clinical exam was an excluding criterion for patients from the study. Any lesion as a cystic or solid mass or echo change or calcification was recorded in the database. If a lesion had a malignant picture, FNA or core biopsy was done for it and the sample was sent for pathologic report."nThis study showed that correlation with sonography is mandatory in women who have dense breasts in mammography, even if it is a low-grade dense breast. If this correlation was not done, breast cancers present in 1.5% of the studied population would be missed."nSo due to the high false negativity of mammography in dense breasts, in the time being, sonography is considered as the second line screening method and complementary modality for mammography. It not only increases the diagnostic accuracy, but also as the only real time imaging modality, it can be used for localization and precise biopsy of breast lesions. Also, it can be used without any limitation as a cheap and harmless way for follow up imaging in short intervals for suspected patients.

  2. Characterization of some previously unclassified "Pasteurella" spp. obtained from the oral cavity of dogs and cats and description of a new species tentatively classified with the family Pasteurellaceae Pohl 1981 and provisionally called taxon 16.

    Science.gov (United States)

    Bisgaard, M; Mutters, R

    1986-06-01

    The taxonomic relationship of 23 unclassified canine and feline strains of Pasteurellaceae and five strains received as Pasteurella spp. or Haemophilus influenzae-murium was investigated by phenotypic and genetic characterization. Eleven strains were classified with four recently described species of genus Pasteurella sensu stricto. Fourteen canine and feline strains formed a homogeneous group, tentatively designated taxon 16. Both phenotypic characters and mol% G + C in DNA and genome size indicate classification of taxon 16 with genus Pasteurella. DNA/DNA hybridizations, however, failed to locate taxon 16 on genus level with accepted or proposed species of the family Pasteurellaceae Pohl 1981. Two additional species obtained from rats and mice remained unclassified, in addition to a human isolate obtained from a dog-bite. The necessity of detailed phenotypic characterization within the family Pasteurellaceae Pohl 1981 needs to be stressed.

  3. Inventario taxonómico de drosophilidae (Diptera en el Parque Nacional Yasuni, Amazonia Ecuatoriana Taxonomic survey of drosophilidae (Diptera in the Yasuni National Park, Ecuadorian Amazon

    Directory of Open Access Journals (Sweden)

    Andrea Elizabeth Acurio

    2009-09-01

    Full Text Available En el Parque Nacional Yasuní, reconocido como un sector de alto endemismo y biodiversidad, ubicado al noroeste de la Amazonía Ecuatoriana se realizó el inventario taxonómico de la familia Drosophilidae. Para la captura de los individuos se utilizaron trampas con atrayente de banano y solución de levadura de cerveza. La identificación taxonómica se realizó usando caracteres morfológicos y la terminalia de los machos. En total se colectaron 7425 individuos clasificados en 34 especies de los géneros: Drosophila Fallén, 1823, Scaptodrosophila Duda, 1923, Neotanygastrella Duda, 1923 y Zaprionus Coquillett, 1901. Seis de estas especies son nuevos registros para el Ecuador: D. araicas Pavan & Nacrur, 1950, D. equinoxialis Dobzhansky, 1946, D. kikkawai Burla, 1954, D. subsaltans Magalhães, 1956, D. neocordata Magalhães, 1956 y D. peninsularis Patterson & Wheeler, 1942. Estos datos incrementan el número de especies registrados para el país y para la región amazónica.In the Yasuni National Park, a place recognized as a hot spot biodiversity, located in the Northwestern Ecuadorian Amazon was made a taxonomic survey of the Drosophilidae. Individuals were collected using traps with banana and yeast as bait. Taxonomic identifications were made by morphologic characters and male genitalia analysis. We collected 7425 individuals of 34 species, from the genera: Drosophila Fallén, 1823, Scaptodrosophila Duda, 1923, Neotanygastrella Duda, 1923 y Zaprionus Coquillett, 1901. Six of them are new records for Ecuador: D. araicas Pavan & Nacrur, 1950, D. equinoxialis Dobzhansky, 1946, D. kikkawai Burla, 1954, D. subsaltans Magalhães, 1956, D. neocordata Magalhães, 1956 and D. peninsularis Patterson & Wheeler, 1942. This data increase the number of species records to Ecuador and the Amazon Region.

  4. Organisms Composing an Experimental Coral Reef Community from Mo'orea, French Polynesia, Exhibit Taxon-Specific Net Production: Net Calcification Ratios

    Directory of Open Access Journals (Sweden)

    Coulson A. Lantz

    2017-09-01

    Full Text Available Current research on coral reefs seeks to link the responses to anthropogenic stressors (such as global warming and ocean acidification [OA] among differing functional levels of biological organization. While experimental studies have identified ex situ taxon-specific responses to OA and global warming, isolating and connecting these effects in situ at the community-level has proved difficult. The difficulties arise from the large number of naturally varying parameters affecting corals reefs, such as light intensity and seawater residence time that affect net community production and calcification. To control variation in seawater residence time and allow light intensity to vary naturally, experimental outer reef (17-m depth benthic communities composed of calcified algae, corals, and reef pavement were constructed in large outdoor flumes in Mo'orea, French Polynesia. Net community production (P, net community calcification (G, the ratio of P/G (P/Gratio, and slope of P regressed on G (P/Gslope were calculated for the communities, and concurrently for the constituent members under the same temperature, light, and flow conditions. P and G, for both the communities and constituent members, were correlated positively with light intensity, whereas P/Gratio and P/Gslope were unaffected by light intensity. P/Gratios and P/Gslopes exhibited values that were specific to each community member. These results suggest that the P/Gratio and P/Gslope may be unaffected by natural variability in light intensity and could serve as useful metrics to relate responses at the taxon and community level, which is an important step in assessing the effects of environmental changes on coral reefs.

  5. Revisión taxonómica del complejo Centaurea alba L. (Asteraceae en la Península Ibérica

    Directory of Open Access Journals (Sweden)

    Devesa, J. A.

    2011-12-01

    Full Text Available Taxonomic revision of the Centaurea alba L. complex (Asteraceae in the Iberian Peninsula.- A taxonomic revision of the Centaurea alba L. complex (Centaurea L. sect. Centaurea in the Iberian Peninsula is presented, which is represented by two species, C. alba and C. costae Willk. Three subspecies of C. alba with reasonably well-defined areas are recognized: C. alba subsp. alba, with three varieties –alba, macrocephala Pau and latronum (Pau E. López & Devesa-, C. alba subsp. aristifera (Pau E. López & Devesa and C. alba subsp. tartesiana Talavera, two of them are proposed as new nomenclatural combinations. Centaurea costae is segregated from C. alba and three varieties are recognized: costae, montsicciana Pau & Font Quer and maluqueri Font Quer. In the case of C. alba var. latronum, C. alba var. macrocephala and C. alba subsp. aristifera, the chromosome number was also studied (2n = 18.Revisión taxonómica del complejo Centaurea alba L. (Asteraceae en la Península Ibérica.- Se efectúa la revisión taxonómica del complejo de Centaurea alba L. (Centaurea L. sect. Centaurea en la Península Ibérica, representado por dos especies, C. alba y C. costae Willk. Para C. alba se reconocen tres subespecies con áreas bien definidas: C. alba subsp. alba, con tres variedades –alba, macrocephala Pau y latronum (Pau E. López & Devesa-, C. alba subsp. aristifera (Pau E. López & Devesa y C. alba subsp. tartesiana Talavera, proponiéndose dos nuevas combinaciones. Se segrega Centaurea costae de C. alba, y se reconocen para ella tres variedades: costae, montsicciana Pau & Font Quer y maluqueri Font Quer. En el caso de C. alba var. latronum, C. alba var. macrocephala y C. alba subsp. aristifera se ha estudiado además el número cromosómico (2n = 18.

  6. Collaborative Research: Neutrinos & Nucleosynthesis in Hot Dense Matter

    Energy Technology Data Exchange (ETDEWEB)

    Reddy, Sanjay

    2013-09-06

    It is now firmly established that neutrinos, which are copiously produced in the hot and dense core of the supernova, play a role in the supernova explosion mechanism and in the synthesis of heavy elements through a phenomena known as r-process nucleosynthesis. They are also detectable in terrestrial neutrino experiments, and serve as a probe of the extreme environment and complex dynamics encountered in the supernova. The major goal of the UW research activity relevant to this project was to calculate the neutrino interaction rates in hot and dense matter of relevance to core collapse supernova. These serve as key input physics in large scale computer simulations of the supernova dynamics and nucleosynthesis being pursued at national laboratories here in the United States and by other groups in Europe and Japan. Our calculations show that neutrino production and scattering rate are altered by the nuclear interactions and that these modifications have important implications for nucleosynthesis and terrestrial neutrino detection. The calculation of neutrino rates in dense matter are difficult because nucleons in the dense matter are strongly coupled. A neutrino interacts with several nucleons and the quantum interference between scattering off different nucleons depends on the nature of correlations between them in dense matter. To describe these correlations we used analytic methods based on mean field theory and hydrodynamics, and computational methods such as Quantum Monte Carlo. We found that due to nuclear effects neutrino production rates at relevant temperatures are enhanced, and that electron neutrinos are more easily absorbed than anti-electron neutrinos in dense matter. The latter, was shown to favor synthesis of heavy neutron-rich elements in the supernova.

  7. Cloud photogrammetry with dense stereo for fisheye cameras

    Science.gov (United States)

    Beekmans, Christoph; Schneider, Johannes; Läbe, Thomas; Lennefer, Martin; Stachniss, Cyrill; Simmer, Clemens

    2016-11-01

    We present a novel approach for dense 3-D cloud reconstruction above an area of 10 × 10 km2 using two hemispheric sky imagers with fisheye lenses in a stereo setup. We examine an epipolar rectification model designed for fisheye cameras, which allows the use of efficient out-of-the-box dense matching algorithms designed for classical pinhole-type cameras to search for correspondence information at every pixel. The resulting dense point cloud allows to recover a detailed and more complete cloud morphology compared to previous approaches that employed sparse feature-based stereo or assumed geometric constraints on the cloud field. Our approach is very efficient and can be fully automated. From the obtained 3-D shapes, cloud dynamics, size, motion, type and spacing can be derived, and used for radiation closure under cloudy conditions, for example. Fisheye lenses follow a different projection function than classical pinhole-type cameras and provide a large field of view with a single image. However, the computation of dense 3-D information is more complicated and standard implementations for dense 3-D stereo reconstruction cannot be easily applied. Together with an appropriate camera calibration, which includes internal camera geometry, global position and orientation of the stereo camera pair, we use the correspondence information from the stereo matching for dense 3-D stereo reconstruction of clouds located around the cameras. We implement and evaluate the proposed approach using real world data and present two case studies. In the first case, we validate the quality and accuracy of the method by comparing the stereo reconstruction of a stratocumulus layer with reflectivity observations measured by a cloud radar and the cloud-base height estimated from a Lidar-ceilometer. The second case analyzes a rapid cumulus evolution in the presence of strong wind shear.

  8. Quantum Dense Coding in Multiparticle Entangled States via Local Measurements

    Institute of Scientific and Technical Information of China (English)

    陈建兰; 匡乐满

    2004-01-01

    We study quantum dense coding between two arbitrarily fixed particles in a (N + 2)-particle maximally-entangled states through introducing an auxiliary qubit and carrying out local measurements. It is shown that the transmitted classical information amount through such an entangled quantum channel is usually less than two classical bits. However, the information amount may reach two classical bits of information, and the classical information capacity is independent of the number of the entangled particles under certain conditions. The results offer deeper insight into quantum dense coding via quantum channels of multi-particle entangled states.

  9. Time-dependent models of dense PDRs with complex molecules

    OpenAIRE

    Morata, O.; Herbst, E.

    2008-01-01

    We present a study of the chemistry of a dense photon-dominated region (PDR) using a time-dependent chemical model. Our major interest is to study the spatial distribution of complex molecules such as hydrocarbons and cyanopolyynes in the cool dense material bordering regions where star formation has taken place. Our standard model uses a homogeneous cloud of density 2x10e4 cm-3 and temperature T=40 K, which is irradiated by a far-ultraviolet radiation field of intermediate intensity, given b...

  10. Dense Subsemigroups of Matrix Semigroups and Semigroups of Linear Transformations

    Institute of Scientific and Technical Information of China (English)

    Yupaporn Kemprasit

    2002-01-01

    Let V be a vector space over a field F = (F, +, .), F* = F\\{0}, LF(V)the semigroup of all linear transformations of V into itself under composition, and Mn(F) the multiplicative full n × n matrix semigroup over F. In this paper, it is proved that the semigroup Mn(F) has a proper dense subsemigroup if and only if(F*, .) has an element of infinite order. Also, the semigroup LF(V) has a proper dense subsemigroup if and only if dimF V = ∞ or (F*, .) has an element of infinite order.

  11. In-plant evaluation of dense medium process performances

    Energy Technology Data Exchange (ETDEWEB)

    R.Q. Honaker; A. Patwardhan [University of Kentucky, Lexington, KY (United States). Department of Mining Engineering

    2006-07-15

    The separation density and process efficiency values achieved by dense medium processes are a function of the particle size fractions being treated, hydrodynamics of the separator, and medium rheology. An in-plant evaluation of the dense medium processes being used in an operating preparation plant was conducted in an effort to develop relationships between the actual separation density and the medium density and to quantify the separation efficiency values. The results were found to correlate well with current fundamental and operating principles governing the processes, which are reviewed and discussed.

  12. Solving Dense Generalized Eigenproblems on Multi-threaded Architectures

    CERN Document Server

    Aliaga, José I; Davidović, Davor; Di Napoli, Edoardo; Igual, Francisco D; Quintana-Ortí, Enrique S

    2011-01-01

    We compare two approaches to compute a portion of the spectrum of dense symmetric definite generalized eigenproblems: one is based on the reduction to tridiagonal form, and the other on the Krylov-subspace iteration. Two large-scale applications, arising in molecular dynamics and material science, are employed to investigate the contributions of the application, architecture, and parallelism of the method to the performance of the solvers. The experimental results on a state-of-the-art 8-core platform, equipped with a graphics processing unit (GPU), reveal that in real applications, iterative Krylov-subspace methods can be a competitive approach also for the solution of dense problems.

  13. Comparison of Rock Varnish Bacterial Communities with Surrounding Non-Varnished Rock Surfaces: Taxon-Specific Analysis and Morphological Description.

    Science.gov (United States)

    Esposito, Alfonso; Ahmed, Engy; Ciccazzo, Sonia; Sikorski, Johannes; Overmann, Jörg; Holmström, Sara J M; Brusetti, Lorenzo

    2015-10-01

    Rock varnish is a thin layer of Fe and Mn oxyhydroxides with embedded clay minerals that contain an increased Mn/Fe ratio compared to that of the Earth's crust. Even if the study of rock varnish has important implications in several fields, the composition of epilithic bacterial communities and the distribution of taxa on varnish surfaces are still not wholly described. The aim of this study was (i) to identify the bacterial taxa which show the greatest variation between varnish and non-varnish environments, collected from the same rock, and (ii) to describe the morphology of epilithic communities through scanning electron microscopy (SEM). Triplicate samples of rock surfaces with varnish and triplicate samples without varnish were collected from five sites in Matsch Valley (South Tyrol, Italy). The V4 region of 16S rRNA gene was analyzed by Illumina sequencing. Fifty-five ubiquitous taxa have been examined to assess variation between varnish and non-varnish. Cyanobacteria, Chloroflexi, Proteobacteria along with minor taxa such as Solirubrobacterales, Conexibaxter, and Rhodopila showed significant variations of abundance, diversity, or both responding to the ecology (presence/absence of varnish). Other taxa, such as the genus Edaphobacter, showed a more marked spatial variation responding to the sampling site. SEM images showed a multitude of bacterial morphologies and structures involved in the process of attachment and creation of a suitable environment for growth. The features emerging from this analysis suggest that the highly oxidative Fe and Mn-rich varnish environment favors anoxigenic autotrophy and establishment of highly specialized bacteria.

  14. El género Dasya (Rhodophyta, Dasyaceae) en la península Ibérica y las islas Baleares: revisión taxonómica y nomenclatural

    OpenAIRE

    Pena Martín, Carolina

    2011-01-01

    En este trabajo se realiza una revisión taxonómica y nomenclatural de las especies del género Dasya presentes en la península Ibérica y las islas Baleares. Dasya es un género complejo, en el que existe una gran confusión nomenclatural y taxonómica. Nuestro estudio ha permitido resolver estas cuestiones para las especies de la zona geográfica considerada. En primer lugar, se ha comprobado la validez de los nombres y precisado las sinonimias y tipificaciones para cada uno de los táxones citados...

  15. Enhancement of Curie temperature of barium hexaferrite by dense electronic excitations

    Directory of Open Access Journals (Sweden)

    Manju Sharma

    2014-07-01

    Full Text Available Curie temperature of polycrystalline barium hexaferrite (BaFe12O19, prepared by conventional solid state technique, is anomalously and significantly enhanced (by nearly 15% by energetic heavy ion irradiation (150 MeV, Ag12+ at ambient temperature due to dense electronic excitations Moderate fluence (1 × 1012 ions/cm2 induces structural defects giving rise to above enhancement. As established by X-ray diffraction, scanning electron microscopy and Raman studies, higher fluence (1 × 1013 ions/cm2 has structurally transformed the sample to amorphous phase with marginal change in magnetization and Curie temperature.

  16. Enhancement of Curie temperature of barium hexaferrite by dense electronic excitations

    Energy Technology Data Exchange (ETDEWEB)

    Sharma, Manju; Kashyap, Subhash C.; Gupta, Hem C. [Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016 (India); Dimri, Mukesh C. [Ajay Kumar Garg Engineering College, Ghaziabad - 201009 (India); Asokan, K. [Materials Science Group, Inter University Accelerator Center, New Delhi-110067 (India)

    2014-07-15

    Curie temperature of polycrystalline barium hexaferrite (BaFe{sub 12}O{sub 19}), prepared by conventional solid state technique, is anomalously and significantly enhanced (by nearly 15%) by energetic heavy ion irradiation (150 MeV, Ag{sup 12+}) at ambient temperature due to dense electronic excitations Moderate fluence (1 × 10{sup 12} ions/cm{sup 2}) induces structural defects giving rise to above enhancement. As established by X-ray diffraction, scanning electron microscopy and Raman studies, higher fluence (1 × 10{sup 13} ions/cm{sup 2}) has structurally transformed the sample to amorphous phase with marginal change in magnetization and Curie temperature.

  17. Multi-Shock Compression of Dense Hydrogen-Helium Mixture Beyond 100GPa

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ming-Jian; LIU Fu-Sheng; TIAN Chun-Ling; SUN Yan-Yun

    2006-01-01

    @@ A cryogenic target system for preparing the dense gaseous samples is established on a two-stage light-gas gun and is applied to study the equation of state of hydrogen-helium mixture at higher pressures and at high temperatures by means of the multi-shock technique. The recorded optical radiation signal clearly indicates the beginning moments of the third-, fourth-, sixth-, eighth-, and tenth-shock processes, which are in good agreement with the predictions of the Mansoori-Canfield-Ross variational perturbation theory up to the observed ultimate state of 104 GPa.

  18. A high-powered siren for stable acoustic levitation of dense materials in the earth's gravity

    Science.gov (United States)

    Gammel, Paul M.; Croonquist, Arvid P.; Wang, Taylor G.

    1988-01-01

    Levitation of large dense samples (e.g., 1-cm diameter steel balls) has been performed in a 1-g environment. A siren was used to study the effects of reflector geometry and variable-frequency operation in order to attain stable acoustic positioning. The harmonic content and spatial distribution of the acoustic field have been investigated. The best stability was obtained with an open reflector system, using a flat lower reflector and a slightly concave upper reflector while operating at a frequency slightly below resonance.

  19. Observations of non-collective x-ray scattering in warm dense carbon plasma

    Science.gov (United States)

    Lihua, Bao; Jiyan, Zhang; Xiaoding, Zhang; Yang, Zhao; Yongkun, Ding

    2012-12-01

    An experiment for observing the spectrally resolved non-collective x-ray scattering in warm dense carbon plasma is presented in this paper. The experiment used Ta M-band x-rays to heat a foamed carbon cylinder sample isochorically and measured the scattering spectrum with a HOPG crystal spectrometer. The spectrum was compared with the calculation results using a Born-Mermin-approximation model. The best fitting was found at an electron temperature of Te=34 eV and an electron density of ne=1.6×1023cm-3.

  20. Crystallographic Characteristics of Grain Boundaries in Dense Yttria-Stabilized Zirconia

    Energy Technology Data Exchange (ETDEWEB)

    Lam Helmick; Shen J. Dillon; Kirk Gerdes; Randall Gemmen; Gregory S. Rohrer; Sridhar Seetharaman; Paul A. Salvador

    2010-04-01

    Grain-boundary plane, misorientation angle, grain size, and grain-boundary energy distributions were quantified using electron backscatter diffraction data for dense polycrystalline yttria-stabilized zirconia, to understand interfacial crystallography in solid oxide fuel cells. Tape-cast samples were sintered at 14501C for 4 h and annealed for at least 100 h between 8001C and 16501C. Distributions obtained from both three-dimensional (3D) reconstructions and stereological analyses of 2D sections demonstrated that the (100) boundary planes {(111)} have relative areas larger {smaller} than expected in a random distribution, and that the boundary plane distribution is inversely correlated to the boundary energy distribution.

  1. Patterns of Food Parenting Practices and Children’s Intake of Energy-Dense Snack Foods

    OpenAIRE

    Dorus W. M. Gevers; Kremers, Stef P. J.; Vries, Nanne K de; Patricia Van Assema

    2015-01-01

    Most previous studies of parental influences on children’s diets included just a single or a few types of food parenting practices, while parents actually employ multiple types of practices. Our objective was to investigate the clustering of parents regarding food parenting practices and to characterize the clusters in terms of background characteristics and children’s intake of energy-dense snack foods. A sample of Dutch parents of children aged 4–12 was recruited by a research agency to fil...

  2. Measurements of X-ray spectral opacity of dense plasma at Iskra-5 laser facility

    Energy Technology Data Exchange (ETDEWEB)

    Annenkov, V.I.; Bel' kov, S.A.; Bessarab, A.V.; Bondarenko, S.V.; Garanin, R.V.; Kochemasov, G.G.; Kovalenko, V.P.; Pinegin, A.V.; Suslov, N.A.; Zhidkov, N.V. [Russian Federal Nuclear Centre - VNIIEF, Sarov (Russian Federation)

    2006-06-15

    The powerful iodine ISKRA-5 laser facility has been upgraded and now operates on the second harmonic. Experiments were performed to measure the X-ray spectral opacity of dense plasma of different materials. Sample of Al and Au material under study was fabricated as a thin plate with the 0.1-0.15 {mu}m thickness and was heated by the soft X-rays generated by irradiation of a thin film gold converter by one beam of the ISKRA-5 laser facility. Typical laser intensity on the converter was (1-5).10{sup 13} W/cm{sup 2} and laser pulse duration was 0.5-0.6 ns. The effective temperature of sample under experimental conditions did not exceed 30-40 eV. The sample was tempered by about 1 {mu}m plastic layers on both sides to avoid its rarefaction during heating and to obtain a quasi-stationary layer of a dense plasma prepared to be probed by a back-lighter. The back-lighter was aluminum or dysprosium film irradiated by another beam of the ISKRA-5 laser facility with an intensity of 10{sup 14}-10{sup 15} W/cm{sup 2}. Probe X-rays were registered by a Bragg spectrometer with spatial resolution. Comparison between experimental data and simulations is discussed. In the case of Al sample, 3 absorption lines corresponding to 1s-2p transition of the Al{sup +4}-Al{sup +6} ions are recorded. The absorption of the Au sample is very close to the absorption of the cold material. The theoretical simulations show that the temperature of the heated Al sample is about 20-25 eV, substantial amount of the Au sample remains unheated at a solid density.

  3. Modular method of detection, localization, and counting of multiple-taxon pollen apertures using bag-of-words

    Science.gov (United States)

    Lozano-Vega, Gildardo; Benezeth, Yannick; Marzani, Franck; Boochs, Frank

    2014-09-01

    Accurate recognition of airborne pollen taxa is crucial for understanding and treating allergic diseases which affect an important proportion of the world population. Modern computer vision techniques enable the detection of discriminant characteristics. Apertures are among the important characteristics which have not been adequately explored until now. A flexible method of detection, localization, and counting of apertures of different pollen taxa with varying appearances is proposed. Aperture description is based on primitive images following the bag-of-words strategy. A confidence map is estimated based on the classification of sampled regions. The method is designed to be extended modularly to new aperture types employing the same algorithm by building individual classifiers. The method was evaluated on the top five allergenic pollen taxa in Germany, and its robustness to unseen particles was verified.

  4. El género Marielliottia (Hifomicetes, Ascomycota: Nuevo taxón asociado a la Micoflora del Grano de Trigo en Argentina The genus Marielliottia (Hyphomycetes, Ascomycota: a new taxon associated with wheat grain mycoflora in Argentina

    Directory of Open Access Journals (Sweden)

    Marina Sisterna

    2006-12-01

    Full Text Available Se registra por primera vez al género Marielliottia asociado a la micoflora del grano de trigo pan en Argentina. Marielliottia biseptata fue aislada de muestras de semillas provenientes de ensayos conducidos en la Estación Experimental Julio Hirschhorn (Los Hornos, Buenos Aires. Las semillas fueron sembradas en agar papa glucosado (APG e incubadas a 21± 1°C ; HR 80% bajo 12 h luz + UV; 12 h de oscuridad. La evaluación para el relevamiento de los hongos se realizó a los 5 y 8 días mediante una lupa estereoscópica. Para la identificación taxonómica, se examinaron las características micromorfológicas y de cultivo. Se realizaron inoculaciones sobre semillas con suspensión de esporas. Se presenta una descripción, ilustraciones, antecedentes e importancia del hongo aquí tratado.For the first time, the genus Marielliottia is registered on wheat grains in Argentina. This fungus was isolated from seed samples from trials conducted at the Estación Experimental Julio Hirschhorn (Los Hornos, Buenos Aires. The seeds were plated on potato dextrose agar (PDA and incubated at 21±1°C; HR 80% under fluorescent lamps supplemented with UV light during 12 h photoperiod. Evaluation was performed for the presence of fungi at 5 and 8 days with the aid of a stereoscopic microscope. For taxonomic identification, the micromorphology and cultures features were examined. As a result of this study, Marielliottia biseptata was determined and inoculations with spore suspension on seeds were carried out. A description, illustrations, antecedents and importance of the treated fungus are presented.

  5. The taxonomic status of the Mexican oak Quercus undata (Fagaceae, Quercus, Section Quercus El estatus taxonómico del encino mexicano Quercus undata (Fagaceae, Quercus, Sección Quercus

    Directory of Open Access Journals (Sweden)

    Jeffrey R. Bacon

    2011-12-01

    Full Text Available Quercus undata Trel. (Fagaceae, Quercus, Section Quercus has a complex taxonomic and nomenclatural history. Intensive sampling of oaks at the type locality of Q. undata Trel. in Durango, Mexico and evaluation of herbarium specimens and plants in the field indicate that Q. undata represents variation in Quercus chihuahuensis Trel. in white oak communities where introgressive hybridization among Q. chihuahuensis, Q. grisea Liebm., and a third white oak, Q. arizonica Sarg. made species identification difficult. Endlich's type specimen of Q. undata, as designated by Trelease, was apparently destroyed in bombing raids on Berlin during World War II, and we propose herein as lectotype the Trelease illustration of the type. An epitype is also designated in support of the lectotype, given that some features cannot be critically observed on the illustration. The long peduncles of the specimen illustrated by Trelease indicate a close relation to Q. chihuahuensis.Quercus undata Trel. (Fagaceae, Quercus, Section Quercus tiene una compleja historia taxonómica y de nomenclatura. Un muestreo intensivo de los encinos en la localidad tipo de Q. undata en Durango, México y análisis de ejemplares en herbario y en el campo indican que Q. undata representa variación en Q. chihuahuensis Trel. en los sitios donde la hibridación introgresiva entre Q. chihuahuensis, Q. grisea Liebm., y un tercer encino blanco, Q. arizonica Sarg., dificultan la identificación de especies. El ejemplar tipo designado por Trelease aparentemente fue destruido en el bombardeo de Berlín durante la Segunda Guerra Mundial, por lo que se propone como lectotipo a la ilustración del tipo en la obra de Trelease. Se designa también un epitipo dado que algunos rasgos no pueden ser críticamente observados en la ilustración. Los largos pedúnculos del espécimen ilustrado por Trelease indican la relación cercana a Q. chihuahuensis.

  6. High levels of diversity uncovered in a widespread nominal taxon: continental phylogeography of the neotropical tree frog Dendropsophus minutus.

    Directory of Open Access Journals (Sweden)

    Marcelo Gehara

    Full Text Available Species distributed across vast continental areas and across major biomes provide unique model systems for studies of biotic diversification, yet also constitute daunting financial, logistic and political challenges for data collection across such regions. The tree frog Dendropsophus minutus (Anura: Hylidae is a nominal species, continentally distributed in South America, that may represent a complex of multiple species, each with a more limited distribution. To understand the spatial pattern of molecular diversity throughout the range of this species complex, we obtained DNA sequence data from two mitochondrial genes, cytochrome oxidase I (COI and the 16S rhibosomal gene (16S for 407 samples of D. minutus and closely related species distributed across eleven countries, effectively comprising the entire range of the group. We performed phylogenetic and spatially explicit phylogeographic analyses to assess the genetic structure of lineages and infer ancestral areas. We found 43 statistically supported, deep mitochondrial lineages, several of which may represent currently unrecognized distinct species. One major clade, containing 25 divergent lineages, includes samples from the type locality of D. minutus. We defined that clade as the D. minutus complex. The remaining lineages together with the D. minutus complex constitute the D. minutus species group. Historical analyses support an Amazonian origin for the D. minutus species group with a subsequent dispersal to eastern Brazil where the D. minutus complex originated. According to our dataset, a total of eight mtDNA lineages have ranges >100,000 km2. One of them occupies an area of almost one million km2 encompassing multiple biomes. Our results, at a spatial scale and resolution unprecedented for a Neotropical vertebrate, confirm that widespread amphibian species occur in lowland South America, yet at the same time a large proportion of cryptic diversity still remains to be discovered.

  7. High Levels of Diversity Uncovered in a Widespread Nominal Taxon: Continental Phylogeography of the Neotropical Tree Frog Dendropsophus minutus

    Science.gov (United States)

    Gehara, Marcelo; Crawford, Andrew J.; Orrico, Victor G. D.; Rodríguez, Ariel; Lötters, Stefan; Fouquet, Antoine; Barrientos, Lucas S.; Brusquetti, Francisco; De la Riva, Ignacio; Ernst, Raffael; Urrutia, Giuseppe Gagliardi; Glaw, Frank; Guayasamin, Juan M.; Hölting, Monique; Jansen, Martin; Kok, Philippe J. R.; Kwet, Axel; Lingnau, Rodrigo; Lyra, Mariana; Moravec, Jiří; Pombal, José P.; Rojas-Runjaic, Fernando J. M.; Schulze, Arne; Señaris, J. Celsa; Solé, Mirco; Rodrigues, Miguel Trefaut; Twomey, Evan; Haddad, Celio F. B.; Vences, Miguel; Köhler, Jörn

    2014-01-01

    Species distributed across vast continental areas and across major biomes provide unique model systems for studies of biotic diversification, yet also constitute daunting financial, logistic and political challenges for data collection across such regions. The tree frog Dendropsophus minutus (Anura: Hylidae) is a nominal species, continentally distributed in South America, that may represent a complex of multiple species, each with a more limited distribution. To understand the spatial pattern of molecular diversity throughout the range of this species complex, we obtained DNA sequence data from two mitochondrial genes, cytochrome oxidase I (COI) and the 16S rhibosomal gene (16S) for 407 samples of D. minutus and closely related species distributed across eleven countries, effectively comprising the entire range of the group. We performed phylogenetic and spatially explicit phylogeographic analyses to assess the genetic structure of lineages and infer ancestral areas. We found 43 statistically supported, deep mitochondrial lineages, several of which may represent currently unrecognized distinct species. One major clade, containing 25 divergent lineages, includes samples from the type locality of D. minutus. We defined that clade as the D. minutus complex. The remaining lineages together with the D. minutus complex constitute the D. minutus species group. Historical analyses support an Amazonian origin for the D. minutus species group with a subsequent dispersal to eastern Brazil where the D. minutus complex originated. According to our dataset, a total of eight mtDNA lineages have ranges >100,000 km2. One of them occupies an area of almost one million km2 encompassing multiple biomes. Our results, at a spatial scale and resolution unprecedented for a Neotropical vertebrate, confirm that widespread amphibian species occur in lowland South America, yet at the same time a large proportion of cryptic diversity still remains to be discovered. PMID:25208078

  8. Interaction of ultrarelativistic electron and proton bunches with dense plasmas

    CERN Document Server

    Rukhadze, A A

    2012-01-01

    Here we discuss the possibility of employment of ultrarelativistic electron and proton bunches for generation of high plasma wakefields in dense plasmas due to the Cherenkov resonance plasma-bunch interaction. We estimate the maximum amplitude of such a wake and minimum system length at which the maximum amplitude can be generated at the given bunch parameters.

  9. Dense Matter and Neutron Stars in Parity Doublet Models

    CERN Document Server

    Schramm, S; Negreiros, R; Steinheimer, J

    2011-01-01

    We investigate the properties of dense matter and neutron stars. In particular we discuss model calculations based on the parity doublet picture of hadronic chiral symmetry. In this ansatz the onset of chiral symmetry restoration is reflected by the degeneracy of baryons and their parity partners. In this approach we also incorporate quarks as degrees of freedom to be able to study hybrid stars.

  10. Length scales and selforganization in dense suspension flows

    NARCIS (Netherlands)

    Düring, G.; Lerner, E.; Wyart, M.

    2014-01-01

    Dense non-Brownian suspension flows of hard particles display mystifying properties: As the jamming threshold is approached, the viscosity diverges, as well as a length scale that can be identified from velocity correlations. To unravel the microscopic mechanism governing dissipation and its

  11. Antiproton beam polarizer using a dense polarized target

    Energy Technology Data Exchange (ETDEWEB)

    Wojtsekhowski, Bogdan

    2011-05-01

    We describe considerations regarding the spin filtering method for the antiproton beam. The proposed investigation of the double polarization cross section for antiproton to nucleon interaction is outlined. It will use a single path of the antiproton beam through a dense polarized target, e.g. 3He or CH2, followed by a polarimeter.

  12. Comprehensive Studies of Ultrafast Laser Excited Warm Dense Gold

    Science.gov (United States)

    Chen, Zhijiang; Mo, Mianzhen; Russell, Brandon; Tsui, Ying; Wang, Xijie; Ng, Andrew; Glenzer, Siegfried

    2016-10-01

    Isochoric excitation of solids by ultrafast laser pulses is an important approach to generate warm dense matter in laboratory. Electrical conductivity, structural dynamics and lattice stabilities are the most important properties in ultrafast laser excited warm dense matter. To investigate these properties, we have developed multiple advanced capabilities at SLAC recently, including the measurement of semi-DC electrical conductivity with ultrafast THz radiation, the study of solid and liquid structural dynamics by ultrafast electron diffraction (UED), and the investigation of lattice stability using frequency domain interferometry (FDI) on both front and rear surfaces. Due to the non-reversible nature in exciting solid to warm dense matter, all these diagnostics are implemented with single-shot approaches, reducing the uncertainties due to shot-to-shot fluctuations. In this talk, we will introduce these novel capabilities and present some highlighted studies in warm dense gold, which was uniformly excited by ultrafast laser pulses at 400nm. We appreciate the supports from DOE FES under FWP #100182.

  13. Rapid haplotype reconstruction in predigrees with dense marker maps

    NARCIS (Netherlands)

    Windig, J.J.; Meuwissen, T.H.E.

    2004-01-01

    Reconstruction of marker phases is not straightforward when parents are untyped. In these cases information from other relatives has to be used. In dense marker maps, however, the space of possible haplotype configurations tends to be too large for procedures such as Monte Carlo Markov chains (MCMC)

  14. Mechanics of dense suspensions in turbulent channel flows

    NARCIS (Netherlands)

    Picano, F.; Costa, P.; Breugem, W.P.; Brandt, L.

    2015-01-01

    Dense suspensions are usually investigated in the laminar limit where inertial effects are insignificant. When the flow rate is high enough, i.e. at high Reynolds number, the flow may become turbulent and the interaction between solid and liquid phases modifies the turbulence we know in single-phase

  15. On discrete Zariski-dense subgroups of algebraic groups

    CERN Document Server

    Winkelmann, J

    1993-01-01

    We investigate for which linear-algebraic groups (over the complex numbers or any local field) there exists subgroups which are dense in the Zariski topology, but discrete in the Hausdorff topology. For instance, such subgroups exist for every non-solvable complex group.

  16. Tableaux for Logics of Subinterval Structures over Dense Orderings

    DEFF Research Database (Denmark)

    Bresolin, Davide; Goranko, Valentin; Montanari, Angelo;

    2010-01-01

    In this article, we develop tableau-based decision procedures for the logics of subinterval structures over dense linear orderings. In particular, we consider the two difficult cases: the relation of strict subintervals (with both endpoints strictly inside the current interval) and the relation o...

  17. Gas-particle interactions in dense gas-fluidised beds

    NARCIS (Netherlands)

    Li, J.; Kuipers, J.A.M.

    2003-01-01

    The occurrence of heterogeneous flow structures in gas-particle flows seriously affects gas¿solid contacting and transport processes in dense gas-fluidized beds. A computational study, using a discrete particle method based on Molecular Dynamics techniques, has been carried out to explore the

  18. Dense Focal Plane Arrays for Pushbroom Satellite Radiometers

    DEFF Research Database (Denmark)

    Iupikov, O. A.; Ivashina, M. V.; Pontoppidan, K.

    2014-01-01

    Performance of a dense focal plane array feeding an offset toroidal reflector antenna system is studied and discussed in the context of a potential application in multi-beam radiometers for ocean surveillance. We present a preliminary design of the array feed for the 5-m diameter antenna at X...

  19. Manifestation of chiral symmetry restoration in a dense medium

    CERN Document Server

    Ericson, M; Delorme, J

    1999-01-01

    We generalize the concept of correlator mixing to the case of a dense baryonic medium. We study the subsequent modifications of the axial nucleonic coupling constant and the pion decay one. They arise from a two pion exchange current of a new type. We discuss the link to the condensate evolution.

  20. Numerical simulation of the fast dense gas Ludwieg tube experiment

    NARCIS (Netherlands)

    Zamfirescu, C.; Guerdone, A.; Collona, P.

    2006-01-01

    The preliminary design of a Ludwieg tube experiment for the verification of the existence of nonclassical rarefaction shock waves in dense vapors is here critically analyzed by means of real gas numerical simulations of the experimental setup. The Flexible Asymmetric Shock Tube (FAST) setup is a den

  1. Dense Descriptors for Optical Flow Estimation: A Comparative Study

    Directory of Open Access Journals (Sweden)

    Ahmadreza Baghaie

    2017-02-01

    Full Text Available Estimating the displacements of intensity patterns between sequential frames is a very well-studied problem, which is usually referred to as optical flow estimation. The first assumption among many of the methods in the field is the brightness constancy during movements of pixels between frames. This assumption is proven to be not true in general, and therefore, the use of photometric invariant constraints has been studied in the past. One other solution can be sought by use of structural descriptors rather than pixels for estimating the optical flow. Unlike sparse feature detection/description techniques and since the problem of optical flow estimation tries to find a dense flow field, a dense structural representation of individual pixels and their neighbors is computed and then used for matching and optical flow estimation. Here, a comparative study is carried out by extending the framework of SIFT-flow to include more dense descriptors, and comprehensive comparisons are given. Overall, the work can be considered as a baseline for stimulating more interest in the use of dense descriptors for optical flow estimation.

  2. Easy Fabrication of Dense Ceramic Membrane for Oxygen Separation

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A combined EDTA-citrate complexing method was developed for the easy preparation of mixed oxygen-ionic and electronic conducting dense ceramic membrane for oxygen separation.The new method takes the advantage of lower calcination temperature for phase formation, lower membrane sintering temperature and higher relative density over the standard ceramic method.

  3. Dry processing versus dense medium processing for preparing thermal coal

    CSIR Research Space (South Africa)

    De Korte, GJ

    2013-10-01

    Full Text Available in the region. In addition to not requiring water, the technique is less expensive than dense medium processing - both in terms of capital cost and operating cost. An added benefit when preparing coal for use in power stations is the lower moisture content...

  4. A comparative study of fast dense stereo vision algorithms

    NARCIS (Netherlands)

    Sunyoto, H.; Mark, W. van der; Gavrila, D.M.

    2004-01-01

    With recent hardware advances, real-time dense stereo vision becomes increasingly feasible for general-purpose processors. This has important benefits for the intelligent vehicles domain, alleviating object segmentation problems when sensing complex, cluttered traffic scenes. In this paper, we prese

  5. Multi-channel Support for Dense Wireless Sensor Networking

    NARCIS (Netherlands)

    Durmaz, O.; Dulman, S.O.; Jansen, P.G.; Havinga, Paul J.M.; Havinga, P.J.M.; Lijding, M.E.M.; Meratnia, N.; Meratnia, Nirvana; Wegdam, M.

    2006-01-01

    Currently, most wireless sensor network applications assume the presence of single-channel Medium Access Control (MAC) protocols. When sensor nodes are densely deployed, single-channel MAC protocols may be inadequate due to the higher demand for the limited bandwidth. To overcome this drawback, we

  6. A new mechanism for dendritic pattern formation in dense systems

    Science.gov (United States)

    Oikawa, Noriko; Kurita, Rei

    2016-06-01

    Patterns are often formed when particles cluster: Since patterns reflect the connectivity of different types of material, the emergence of patterns affects the physical and chemical properties of systems and shares a close relationship to their macroscopic functions. A radial dendritic pattern (RDP) is observed in many systems such as snow crystals, polymer crystals and biological systems. Although most of these systems are considered as dense particle suspensions, the mechanism of RDP formation in dense particle systems is not yet understood. It should be noted that the diffusion limited aggregation model is not applicable to RDP formation in dense systems, but in dilute particle systems. Here, we propose a simple model that exhibits RDP formation in a dense particle system. The model potential for the inter-particle interaction is composed of two parts, a repulsive and an attractive force. The repulsive force is applied to all the particles all the time and the attractive force is exerted only among particles inside a circular domain, which expands at a certain speed as a wave front propagating from a preselected centre. It is found that an RDP is formed if the velocity of the wave front that triggers the attractive interaction is of the same order of magnitude as the time scale defined by the aggregation speed.

  7. Self-diffusion in a dense magnetized plasma

    NARCIS (Netherlands)

    Cohen, J.S.; Suttorp, L.G.

    1984-01-01

    Self-diffusion through dense classical one-component plasmas in a uniform magnetic field is studied by means of renormalized kinetic theory. Extensions of the Landau and the Rostoker equations to plasmas of high density are derived. The coefficient of self-diffusion along the magnetic field is evalu

  8. Cerebellar Granule Cells: Dense, Rich and Evolving Representations

    NARCIS (Netherlands)

    Badura, Aleksandra; De Zeeuw, Chris I

    2017-01-01

    For half a century it was assumed that granule cells use ultra-sparse encoding, but now in vivo calcium-imaging studies have shown that large ensembles of granule cells provide dense signals, which themselves evolve and adapt during training.

  9. Formation and liquid permeability of dense colloidal cube packings

    NARCIS (Netherlands)

    Castillo, Sonja I R; Thies-Weesie, Dominique M E; Philipse, Albert P.

    2015-01-01

    The liquid permeability of dense random packings of cubic colloids with rounded corners is studied for solid hematite cubes and hollow microporous silica cubes. The permeabilities of these two types of packings are similar, confirming that the micropores in the silica shell of the hollow cubes do

  10. Multi-scaling of the dense plasma focus

    Science.gov (United States)

    Saw, S. H.; Lee, S.

    2015-03-01

    The dense plasma focus is a copious source of multi-radiations with many potential new applications of special interest such as in advanced SXR lithography, materials synthesizing and testing, medical isotopes and imaging. This paper reviews the series of numerical experiments conducted using the Lee model code to obtain the scaling laws of the multi-radiations.

  11. Input energy measurement toward warm dense matter generation using intense pulsed power generator

    Science.gov (United States)

    Hayashi, R.; Ito, T.; Ishitani, T.; Tamura, F.; Kudo, T.; Takakura, N.; Kashine, K.; Takahashi, K.; Sasaki, T.; Kikuchi, T.; Harada, Nob.; Jiang, W.; Tokuchi, A.

    2016-05-01

    In order to investigate properties of warm dense matter (WDM) in inertial confinement fusion (ICF), evaluation method for the WDM with isochoric heating on the implosion time-scale using an intense pulsed power generator ETIGO-II (∼1 TW, ∼50 ns) has been considered. In this study, the history of input energy into the sample is measured from the voltage and the current waveforms. To achieve isochoric heating, a foamed aluminum with pore sizes 600 μm and with 90% porosity was packed into a hollow glass capillary (ø 5 mm × 10 mm). The temperature of the sample is calculated from the numerical calculation using the measured input power. According to the above measurements, the input energy into a sample and the achievable temperature are estimated to be 300 J and 6000 K. It indicates that the WDM state is generated using the proposed method with ICF implosion time-scale.

  12. Composición taxonómica del zooplancton del embalse de Betania, departamento del Huila, Colombia Composición taxonómica del zooplancton del embalse de Betania, departamento del Huila, Colombia

    Directory of Open Access Journals (Sweden)

    Guillot Monroy Gabriel Hernando

    1999-06-01

    Full Text Available

    Durante el año de 1991 se realizaron muestreos con frecuencia bimestral en el embalse de Betania (alt.: 560 m.s.n.m.; área: 7.4 km2; volumen 1971x106 m3; prof. media: 28 m en el departamento del Huila, con el objetivo de determinar la composición del zooplancton.  En total se registraron 24 taxa: Thermocyclops decipiens (Crustacea, Copepoda, Moina sp., Ceriodaphnia cornuta y Allona sp. (Crustacea, Cladocera; 19 especies de rotíferos, de los cuales 7 corresponden al género Brachionus y larvas del díptero Chaoborus sp.  Se registran por primera vez para Colombia Brachionus havanaensis, B. falcatus falcatus, b. quadridentatus, y Platyias cuadricornis  f. brevispinus.   A partir de la comparación con faunas zooplanctónicas de varios cuerpos de agua tropicales y subtropicales, se concluyó que la composición zooplanctónica del embalse es típica de lagos tropicales cálidos.

    To determine the species composition of the zooplancton in the reservoir Betania (altitude; 560 m.a.s.l.; area: 7.4 km2; vol: 1971 x 106 m3; mean depht 28 m, at seven sites and several depths, bimonthly net samples (100 and 200 microns mesh size were taken during 1991.  Alltogether 24 species were found: Thermocyclops decipiens (Crustacea, Copepoda, Moina sp., Ceriodaphnia cornuta y Allona sp. (Crustacea, Cladocera; 19 species of rotífers, of which 7 belong to the genus Brachionus, as well as larvas of the dipter Chaoborus sp. For the first time Brachionus havanaensis, B. falcatus falcatus, b. quadridentatus, y Platyias cuadricornis  f. brevispinus  were found in Colombia.  The species composition was compared with the composition of other lakes and comparison shows that the Betania reservoir has a typical species composition for warms tropical lakes.

  13. Long-term visual outcome of dense bilateral congenital cataract

    Institute of Scientific and Technical Information of China (English)

    YE He-hua; DENG Da-ming; QIAN Yi-yong; LIN Zhi; CHEN Wei-rong

    2007-01-01

    Background Dense congenital cataracts often cause severe visual impairment. The results of long-term follow-up of dense bilateral congenital cataract in China have not been well documented. The purpose of this study was to evaluate the long-term visual function in children who underwent cataract extraction for dense bilateral congenital cataract in southern part of China.Methods Medical records of children who underwent surgery of dense bilateral congenital cataract between January 1992 and December 2000 at Zhongshan Ophthalmic Center of Sun Yat-sen University were retroactively reviewed. In 38 children available for current follow-up, best corrected visual acuity (BCVA) and stereoscopic vision, as well as nystagmus, strabismus, and other complications, were evaluated. The mean follow-up period was 107.6 months (range 60 to 167 months).Results The mean age of cataract extraction and secondary intraocular lens implantation were 5.6 months (range 3 to 12 months) and 4.2 years (range 2.4 to 15 years), respectively. The mean BCVA was 0.25 in the better eye and 0.16 in the fellow eye. Stereoscopic vision was absent in all patients, and 3 children had simultaneous perception. Nystagmus was detected in all cases and strabismus in 35 cases. A high correlation was found between timing of cataract extraction and final BCVA of the better eye (r=-0.55, P=0.00). A statistically significant difference was found in BCVA between postand pre-treatment of amblyopia (t=5.65, P=0.00).Conclusions Long-term visual function in children with dense bilateral congenital cataract was poor when cataract surgery was performed at age of 3 months or later. Earlier cataract surgery with adequate optical rehabilitation contributed to better visual outcome.

  14. Sampling algorithms

    CERN Document Server

    Tillé, Yves

    2006-01-01

    Important progresses in the methods of sampling have been achieved. This book draws up an inventory of methods that can be useful for selecting samples. Forty-six sampling methods are described in the framework of general theory. This book is suitable for experienced statisticians who are familiar with the theory of survey sampling.

  15. Balanced sampling

    NARCIS (Netherlands)

    Brus, D.J.

    2015-01-01

    In balanced sampling a linear relation between the soil property of interest and one or more covariates with known means is exploited in selecting the sampling locations. Recent developments make this sampling design attractive for statistical soil surveys. This paper introduces balanced sampling

  16. Sample Design.

    Science.gov (United States)

    Ross, Kenneth N.

    1987-01-01

    This article considers various kinds of probability and non-probability samples in both experimental and survey studies. Throughout, how a sample is chosen is stressed. Size alone is not the determining consideration in sample selection. Good samples do not occur by accident; they are the result of a careful design. (Author/JAZ)

  17. Balanced sampling

    NARCIS (Netherlands)

    Brus, D.J.

    2015-01-01

    In balanced sampling a linear relation between the soil property of interest and one or more covariates with known means is exploited in selecting the sampling locations. Recent developments make this sampling design attractive for statistical soil surveys. This paper introduces balanced sampling

  18. Slice Sampling

    CERN Document Server

    Neal, R M

    2000-01-01

    Markov chain sampling methods that automatically adapt to characteristics of the distribution being sampled can be constructed by exploiting the principle that one can sample from a distribution by sampling uniformly from the region under the plot of its density function. A Markov chain that converges to this uniform distribution can be constructed by alternating uniform sampling in the vertical direction with uniform sampling from the horizontal `slice' defined by the current vertical position, or more generally, with some update that leaves the uniform distribution over this slice invariant. Variations on such `slice sampling' methods are easily implemented for univariate distributions, and can be used to sample from a multivariate distribution by updating each variable in turn. This approach is often easier to implement than Gibbs sampling, and more efficient than simple Metropolis updates, due to the ability of slice sampling to adaptively choose the magnitude of changes made. It is therefore attractive f...

  19. Model studies of dense water overflows in the Faroese Channels

    Science.gov (United States)

    Cuthbertson, Alan; Davies, Peter; Stashchuk, Nataliya; Vlasenko, Vasiliy

    2014-01-01

    The overflow of dense water from the Nordic Seas through the Faroese Channel system was investigated through combined laboratory experiments and numerical simulations using the Massachusetts Institute of Technology General Circulation Model. In the experimental study, a scaled, topographic representation of the Faroe-Shetland Channel, Wyville-Thomson Basin and Ridge and Faroe Bank Channel seabed bathymetry was constructed and mounted in a rotating tank. A series of parametric experiments was conducted using dye-tracing and drogue-tracking techniques to investigate deep-water overflow pathways and circulation patterns within the modelled region. In addition, the structure of the outflowing dense bottom water was investigated through density profiling along three cross-channel transects located in the Wyville-Thomson Basin and the converging, up-sloping approach to the Faroe Bank Channel. Results from the dye-tracing studies demonstrate a range of parametric conditions under which dense water overflow across the Wyville-Thomson Ridge is shown to occur, as defined by the Burger number, a non-dimensional length ratio and a dimensionless dense water volume flux parameter specified at the Faroe-Shetland Channel inlet boundary. Drogue-tracking measurements reveal the complex nature of flow paths and circulations generated in the modelled topography, particularly the development of a large anti-cyclonic gyre in the Wyville-Thompson Basin and up-sloping approach to the Faroe Bank Channel, which diverts the dense water outflow from the Faroese shelf towards the Wyville-Thomson Ridge, potentially promoting dense water spillage across the ridge itself. The presence of this circulation is also indicated by associated undulations in density isopycnals across the Wyville-Thomson Basin. Numerical simulations of parametric test cases for the main outflow pathways and density structure in a similarly-scaled Faroese Channels model domain indicate excellent qualitative agreement with

  20. Sparse Recovery Optimization in Wireless Sensor Networks with a Sub-Nyquist Sampling Rate

    National Research Council Canada - National Science Library

    Brunelli, Davide; Caione, Carlo

    2015-01-01

    .... Using data from a real dataset, we compare an implementation of CS using dense encoding matrices, where samples are gathered at a Nyquist rate, with the reconstruction of signals sampled at a sub-Nyquist rate...

  1. HectoMAP and Horizon Run 4: Dense Structures and Voids in the Real and Simulated Universe

    CERN Document Server

    Hwang, Ho Seong; Park, Changbom; Fabricant, Daniel G; Kurtz, Michael J; Rines, Kenneth J; Kim, Juhan; Diaferio, Antonaldo; Zahid, H Jabran; Berlind, Perry; Calkins, Michael; Tokarz, Susan; Moran, Sean

    2016-01-01

    HectoMAP is a dense redshift survey of red galaxies covering a 53 $deg^{2}$ strip of the northern sky. HectoMAP is 97\\% complete for galaxies with $r1.0$, and $(r-i)>0.5$. The survey enables tests of the physical properties of large-scale structure at intermediate redshift against cosmological models. We use the Horizon Run 4, one of the densest and largest cosmological simulations based on the standard $\\Lambda$ Cold Dark Matter ($\\Lambda$CDM) model, to compare the physical properties of observed large-scale structures with simulated ones in a volume-limited sample covering 8$\\times10^6$ $h^{-3}$ Mpc$^3$ in the redshift range $0.22dense large-scale features of the galaxy distribution. The richness and size distributions of observed over-dense structures agree well with the simulated ones. Observations and simulations also agree for the volume and size distributions of under-dense structures, voids. The ...

  2. Phase matching alters spatial multiphoton processes in dense atomic ensembles

    CERN Document Server

    Leszczyński, Adam; Wasilewski, Wojciech

    2016-01-01

    Multiphoton processes in dense atomic vapors such as four-wave mixing or coherent blue light generation are typically viewed from single-atom perspective. Here we study the surprisingly important effect of phase matching near two-photon resonances that arises due to spatial extent of the atomic medium within which the multiphoton process occurs. The non-unit refractive index of the atomic vapor may inhibit generation of light in nonlinear processes, significantly shift the efficiency maxima in frequencies and redirect emitted beam. We present these effects on an example of four-wave mixing in dense rubidium vapors in a double-ladder configuration. By deriving a simple theory that takes into account essential spatial properties of the process, we give precise predictions and confirm their validity in the experiment. The model allows us to improve on the geometry of the experiment and engineer more efficient four-wave mixing.

  3. Hausdorff hyperspaces of $R^m$ and their dense subspaces

    CERN Document Server

    Kubis, Wieslaw

    2007-01-01

    Let $CLB_H(X)$ denote the hyperspace of closed bounded subsets of a metric space $X$, endowed with the Hausdorff metric topology. We prove, among others, that natural dense subspaces of $CLB_H(R^m)$ of all nowhere dense closed sets, of all perfect sets, of all Cantor sets and of all Lebesgue measure zero sets are homeomorphic to the Hilbert space $\\ell_2$. Moreover, we investigate the hyperspace $CL_H(R)$ of all nonempty closed subsets of the real line $R$ with the Hausdorff (infinite-valued) metric. We show that a nonseparable component of $CL_H(R)$ is homeomorphic to the Hilbert space $\\ell_2(2^{\\aleph_0})$ as long as it does not contain any of the sets $R, [0,\\infty), (-\\infty,0]$.

  4. Dense and diffuse gas in dynamically active clouds

    CERN Document Server

    Garrod, R T; Rawlings, J M C

    2006-01-01

    We investigate the chemical and observational implications of repetitive transient dense core formation in molecular clouds. We allow a transient density fluctuation to form and disperse over a period of 1 Myr, tracing its chemical evolution. We then allow the same gas immediately to undergo further such formation and dispersion cycles. The chemistry of the dense gas in subsequent cycles is similar to that of the first, and a limit cycle is reached quickly (2 - 3 cycles). Enhancement of hydrocarbon abundances during a specific period of evolution is the strongest indicator of previous dynamical history. The molecular content of the diffuse background gas in the molecular cloud is expected to be strongly enhanced by the core formation and dispersion process. Such enhancement may remain for as long as 0.5 Myr. The frequency of repetitive core formation should strongly determine the level of background molecular enhancement. We also convolve the emission from a synthesised dark cloud, comprised of ensembles of t...

  5. Multi-view Dense Match for Forest Area

    Science.gov (United States)

    Tao, W.

    2014-11-01

    LIDAR (Light Detection And Ranging) is widely used in forestry applications to obtain information about tree density, composition, change, etc. An advantage of LIDAR is its ability to get this information in a 3D structure. However, the density of LIDAR data is low, the acquisition of LIDAR data is often very expensive, and it is difficult to be utilised in small areas. In this article we eavluate different methods by using multi-view to acquire high resolution images of the forest. Using the dense match method a dense point cloud can be generated. Our analysis shows that this method can provide a good alternative to using LIDAR in situations such as these.

  6. A review of flow modeling for dense medium cyclones

    Energy Technology Data Exchange (ETDEWEB)

    M. Narasimha; M.S. Brennan; P.N. Holtham [Tata Steel, Jamshedpur (India). R& amp; D Division

    2006-06-15

    A critical assessment is presented for the existing fluid flow models used for dense medium cyclones (DMCs) and hydrocyclones. As the present discussion indicates, the understanding of dense medium cyclone flow is still far from the complete. However, its similarity to the hydrocyclone provides a basis for improved understanding of fluid flow in DMCs. The complexity of fluid flow in DMCs is basically due to the existence of medium as well as the dominance of turbulent particle size and density effects on separation. Both the theoretical and experimental analysis is done with respect to two-phase motions and solid phase flow in hydrocyclones or DMCs. A detailed discussion is presented on the empirical, semiempirical, and the numerical models based upon both the vorticity-stream function approach and Navier-Stokes equations in their primitive variables and in cylindrical coordinates available in literature. The existing equations describing turbulence and multiphase flows in cyclone are also critically reviewed.

  7. Self-consistent proton crystallization in dense neutron star matter

    Energy Technology Data Exchange (ETDEWEB)

    Kutschera, M. [Institute of Nuclear Physics, Cracow (Poland); Wojcik, W. [Politechnika Krakowska, Cracow (Poland)

    1992-11-01

    We construct a solid-like variational wave functions for protons localized in dense neutron star matter. The localized protons are centered on the lattice sites and the neutron background is described by periodic Bloch wave functions. The self-consistent periodic structure arises due to a collective mean field. For low proton fraction the periodic potential is weak and the neutron Fermi surface is well approximated by a sphere. With the Skyrme forces we find that the proton solid is of lower energy than a uniform matter for densities above n{sub l} {approx} 4 n{sub 0}, where n{sub 0} = 0.17 fm{sup -3} is the nuclear saturation density. We discuss implications of the proton crystallization for properties of dense matter in neutron stars. (author). 7 refs, 8 figs.

  8. The equilibrium of dense plasma in a gravity field

    CERN Document Server

    Vasilev, B V

    2000-01-01

    The equilibrium of dense plasma in a gravity field and problem of a gravity-induced electric polarization in this matter are discussed. The calculation for metals performed before shows that both - the gravity-induced compressive strain and the gravity-induced electric field - are inversely proportional to their Young moduli. The calculation for high dense plasma, where Young modulus is equal to zero, shows that there is another effect: each cell of this plasma inside a celestial body in own gravity field obtains the small positive electric charge. It happens as heavy ions sag on to light electron clouds. A celestial body stays electrically neutral as a whole, because the negative electric charge concentrates on its surface. The gravity-induced positive volume charge is very small, its order of magnitude equals to $10^{-18}e$ per atom only. But it is sufficient for the complete conterbalancing of the gravity force.

  9. Ultrasfast Dynamics in Dense Hydrogen Explored at Flash

    Energy Technology Data Exchange (ETDEWEB)

    Hilbert, V; Zastrau, U; Neumayer, P; Hochhaus, D; Toleikis, S; Harmand, M; Przystawik, A; Tschentscher, T; Glenzer, S H; Doeppner, T; Fortmann, C; White, T; Gregori, G; Gode, S; Tiggesbaumker, J; Skruszewicz, S; Meiwes-Broer, K H; Sperling, P; Redmer, R; Forster, E

    2011-08-01

    The short pulse duration and high intensity of the FLASH (Free-electron LASer in Hamburg) allows us to generate and probe homogeneous warm dense non-equilibrium hydrogen within a single extreme ultraviolet (EUV) light pulse. By analyzing the spectrum of the 13.5 nm Thomson scattered light we determine the plasma temperature and density. We find that classical models of this interaction are in good agreement with our dense plasma conditions. In a FEL-pump FEL-probe experiment droplets of liquid hydrogen and their scattering behavior for different pump-probe setups were observed under 20{sup o} and 90{sup o}. We find that the scattering behavior of the scattered intensity depends on the scattering angle.

  10. Discerning the Form of the Dense Core Mass Function

    CERN Document Server

    Swift, Jonathan J

    2009-01-01

    We investigate the ability to discern between lognormal and powerlaw forms for the observed mass function of dense cores in star forming regions. After testing our fitting, goodness-of-fit, and model selection procedures on simulated data, we apply our analysis to 14 datasets from the literature. Whether the core mass function has a powerlaw tail or whether it follows a pure lognormal form cannot be distinguished from current data. From our simulations it is estimated that datasets from uniform surveys containing more than approximately 500 cores with a completeness limit below the peak of the mass distribution are needed to definitively discern between these two functional forms. We also conclude that the width of the core mass function may be more reliably estimated than the powerlaw index of the high mass tail and that the width may also be a more useful parameter in comparing with the stellar initial mass function to deduce the statistical evolution of dense cores into stars.

  11. Diagnosis of Choroidal Melanoma in Dense Asteroid Hyalosis.

    Science.gov (United States)

    Motiani, Meghna V; McCannel, Colin A; Almanzor, Robert; McCannel, Tara A

    2017-01-01

    To demonstrate the utility of Optos ultra-wide field imaging in the diagnosis and management of choroidal melanoma in the setting of asteroid hyalosis. Observational case report. A 52-year-old female was referred for evaluation of floaters, photopsias, and blurry vision in the right eye. Clinical examination revealed dense asteroid hyalosis obscuring the fundus, and a limited view of a pigmented choroidal lesion in the nasal periphery. Optos ultra-wide field fluorescein angiography and ultrasonography facilitated the diagnosis of a choroidal melanoma. The patient underwent Iodine-125 brachytherapy for local tumor control and excellent tumor response was confirmed with serial follow-up Optos imaging and ultrasonography. Ultra-wide field fundus fluorescein angiography facilitated the diagnosis of a choroidal melanoma, which was obscured by dense asteroid hyalosis, allowing for local tumor control with brachytherapy. Optos wide-field imaging may be a valuable tool for detecting potentially life-threatening lesions in the setting of asteroid hyalosis.

  12. Efficient Decomposition of Dense Matrices over GF(2)

    CERN Document Server

    Albrecht, Martin R

    2010-01-01

    In this work we describe an efficient implementation of a hierarchy of algorithms for the decomposition of dense matrices over the field with two elements (GF(2)). Matrix decomposition is an essential building block for solving dense systems of linear and non-linear equations and thus much research has been devoted to improve the asymptotic complexity of such algorithms. In this work we discuss an implementation of both well-known and improved algorithms in the M4RI library. The focus of our discussion is on a new variant of the M4RI algorithm - denoted MMPF in this work -- which allows for considerable performance gains in practice when compared to the previously fastest implementation. We provide performance figures on x86_64 CPUs to demonstrate the viability of our approach.

  13. A look at scalable dense linear algebra libraries

    Energy Technology Data Exchange (ETDEWEB)

    Dongarra, J.J. [Tennessee Univ., Knoxville, TN (United States). Dept. of Computer Science]|[Oak Ridge National Lab., TN (United States); Van de Geijn, R.A. [Texas Univ., Austin, TX (United States). Dept. of Computer Sciences; Walker, D.W. [Oak Ridge National Lab., TN (United States)

    1992-08-01

    We discuss the essential design features of a library of scalable software for performing dense linear algebra computations on distributed memory concurrent computers. The square block scattered decomposition is proposed as a flexible and general-purpose way of decomposing most, if not all, dense matrix problems. An object- oriented interface to the library permits more portable applications to be written, and is easy to learn and use, since details of the parallel implementation are hidden from the user. Experiments on the Intel Touchstone Delta system with a prototype code that uses the square block scattered decomposition to perform LU factorization are presented and analyzed. It was found that the code was both scalable and efficient, performing at about 14 GFLOPS (double precision) for the largest problem considered.

  14. A look at scalable dense linear algebra libraries

    Energy Technology Data Exchange (ETDEWEB)

    Dongarra, J.J. (Tennessee Univ., Knoxville, TN (United States) Dept. of Computer Science Oak Ridge National Lab., TN (United States)); van de Geijn, R. (Texas Univ., Austin, TX (United States). Dept. of Computer Sciences); Walker, D.W. (Oak Ridge National Lab., TN (United States))

    1992-07-01

    We discuss the essential design features of a library of scalable software for performing dense linear algebra computations on distributed memory concurrent computers. The square block scattered decomposition is proposed as a flexible and general-purpose way of decomposing most, if not all, dense matrix problems. An object- oriented interface to the library permits more portable applications to be written, and is easy to learn and use, since details of the parallel implementation are hidden from the user. Experiments on the Intel Touchstone Delta system with a prototype code that uses the square block scattered decomposition to perform LU factorization are presented and analyzed. It was found that the code was both scalable and efficient, performing at about 14 Gflop/s (double precision) for the largest problem considered.

  15. A look at scalable dense linear algebra libraries

    Energy Technology Data Exchange (ETDEWEB)

    Dongarra, J.J. (Tennessee Univ., Knoxville, TN (United States). Dept. of Computer Science Oak Ridge National Lab., TN (United States)); Van de Geijn, R.A. (Texas Univ., Austin, TX (United States). Dept. of Computer Sciences); Walker, D.W. (Oak Ridge National Lab., TN (United States))

    1992-01-01

    We discuss the essential design features of a library of scalable software for performing dense linear algebra computations on distributed memory concurrent computers. The square block scattered decomposition is proposed as a flexible and general-purpose way of decomposing most, if not all, dense matrix problems. An object- oriented interface to the library permits more portable applications to be written, and is easy to learn and use, since details of the parallel implementation are hidden from the user. Experiments on the Intel Touchstone Delta system with a prototype code that uses the square block scattered decomposition to perform LU factorization are presented and analyzed. It was found that the code was both scalable and efficient, performing at about 14 GFLOPS (double precision) for the largest problem considered.

  16. Collective waves in dense and confined microfluidic droplet arrays

    Science.gov (United States)

    Schiller, Ulf D.; Fleury, Jean-Baptiste; Seemann, Ralf; Gompper, Gerhard

    Excitation mechanisms for collective waves in confined dense one-dimensional microfluidic droplet arrays are investigated by experiments and computer simulations. We demonstrate that distinct modes can be excited by creating specific `defect' patterns in flowing droplet trains. Excited longitudinal modes exhibit a short-lived cascade of pairs of laterally displacing droplets. Transversely excited modes obey the dispersion relation of microfluidic phonons and induce a coupling between longitudinal and transverse modes, whose origin is the hydrodynamic interaction of the droplets with the confining walls. Moreover, we investigate the long-time behaviour of the oscillations and discuss possible mechanisms for the onset of instabilities. Our findings demonstrate that the collective dynamics of microfluidic droplet ensembles can be studied particularly well in dense and confined systems. Experimentally, the ability to control microfluidic droplets may allow to modulate the refractive index of optofluidic crystals which is a promising approach for the production of dynamically programmable metamaterials.

  17. Propagation of Light in a Hot and Dense Medium

    CERN Document Server

    Masood, Samina

    2016-01-01

    Photons, as quanta of electromagnetic fields, determine the electromagnetic properties of an extremely hot and dense medium. Considering the properties of photons in the interacting medium of charged particles, we explicitly calculate the electromagnetic properties such as the electric permittivity, magnetic permeability, refractive index and the propagation speed of electromagnetic signals in extremely hot and dense background in cosmos. Photons acquire dynamically generated mass in a medium. The screening mass of photon, Debye shielding length and the plasma frequency are calculated as functions of statistical parameters of the medium. We study the properties of the propagating particles in astrophysical systems of distinct statistical conditions. The modifications in the medium properties lead to the equation of state of the system. We mainly calculate all these parameters for extremely high temperatures of the early universe.

  18. The electron-atom interaction in partially ionized dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Omarbakiyeva, Yu A; Ramazanov, T S; Roepke, G [IETP, Al Farabi Kazakh National University, Tole Bi 96a, Almaty 050012 (Kazakhstan)], E-mail: yultuz@physics.kz

    2009-05-29

    The electron-atom interaction is considered in dense partially ionized plasmas. The separable potential is constructed from scattering data using effective radius theory. Parameters of the interaction potential were obtained from phase shifts, scattering length and effective radius. The binding energy of the electron in the H{sup -} ion is determined for the singlet channel on the basis of the reconstructed separable potential. In dense plasmas, the influence of the Pauli exclusion principle on the phase shifts and the binding energy is considered. Due to the Pauli blocking, the binding energy vanishes at the Mott density. At that density the behavior of the phase shifts is drastically changed. This leads to modifications of macroscopic properties such as composition and transport coefficients.

  19. Dense graphlet statistics of protein interaction and random networks.

    Science.gov (United States)

    Colak, R; Hormozdiari, F; Moser, F; Schönhuth, A; Holman, J; Ester, M; Sahinalp, S C

    2009-01-01

    Understanding evolutionary dynamics from a systemic point of view crucially depends on knowledge about how evolution affects size and structure of the organisms' functional building blocks (modules). It has been recently reported that statistics over sparse PPI graphlets can robustly monitor such evolutionary changes. However, there is abundant evidence that in PPI networks modules can be identified with highly interconnected (dense) and/or bipartite subgraphs. We count such dense graphlets in PPI networks by employing recently developed search strategies that render related inference problems tractable. We demonstrate that corresponding counting statistics differ significantly between prokaryotes and eukaryotes as well as between "real" PPI networks and scale free network emulators. We also prove that another class of emulators, the low-dimensional geometric random graphs (GRGs) cannot contain a specific type of motifs, complete bipartite graphs, which are abundant in PPI networks.

  20. Magnetoacoustic solitons in dense astrophysical electron-positron-ion plasmas

    Science.gov (United States)

    Hussain, S.; Mahmood, S.; Mushtaq, A.

    2013-08-01

    Nonlinear magnetoacoustic waves in dense electron-positron-ion plasmas are investigated by using three fluid quantum magnetohydrodynamic model. The quantum mechanical effects of electrons and positrons are taken into account due to their Fermionic nature (to obey Fermi statistics) and quantum diffraction effects (Bohm diffusion term) in the model. The reductive perturbation method is employed to derive the Korteweg-de Vries (KdV) equation for low amplitude magnetoacoustic soliton in dense electron-positron-ion plasmas. It is found that positron concentration has significant impact on the phase velocity of magnetoacoustic wave and on the formation of single pulse nonlinear structure. The numerical results are also illustrated by taking into account the plasma parameters of the outside layers of white dwarfs and neutron stars/pulsars.

  1. Phase matching alters spatial multiphoton processes in dense atomic ensembles.

    Science.gov (United States)

    Leszczyński, Adam; Parniak, Michał; Wasilewski, Wojciech

    2017-01-09

    Multiphoton processes in dense atomic vapors such as four-wave mixing or coherent blue light generation are typically viewed from single-atom perspective. Here we study the surprisingly important effect of phase matching near two-photon resonances that arises due to spatial extent of the atomic medium within which the multiphoton process occurs. The non-unit refractive index of the atomic vapor may inhibit generation of light in nonlinear processes, significantly shift the efficiency maxima in frequencies and redirect emitted beam. We present these effects on an example of four-wave mixing in dense rubidium vapors in a double-ladder configuration. By deriving a simple theory that takes into account essential spatial properties of the process, we give precise predictions and confirm their validity in the experiment. The model allows us to improve on the geometry of the experiment and engineer more efficient four-wave mixing.

  2. Distributed Wi-Fi Interference Coordination for Dense Deployments

    DEFF Research Database (Denmark)

    Abinader, Fuad; Choudhury, Sayantan; Souza Jr., Vicente A.

    2017-01-01

    with proper OBSS interference coordination. We propose a novel distributed interference coordination scheme for Wi-Fi scheduled mode operation, and evaluate it through system level simulations. Results indicate that the proposed scheme provides significant improvements over Enhanced Distributed Channel Access......Unlicensed spectrum is increasingly being used by mobile operators to meet the mobile traffic demand, and Wi-Fi is foreseen as one of the technologies for implementing mobile traffic offloading. However, Wi-Fi efficiency does not scale well as node density increases, and IEEE 802.11ax Task Group...... (TGax) was created in 2014 for developing WiFi technology enhancements in dense deployments. This paper investigates Wi-Fi performance in the presence of Overlapping Basic Subscriber Set (OBSS) Wi-Fi networks in indoor dense deployments. We observe that Wi-Fi could benefit from scheduled operation...

  3. Dense gas in high-latitude molecular clouds

    Science.gov (United States)

    Reach, William T.; Pound, Marc W.; Wilner, David J.; Lee, Youngung

    1995-01-01

    The nearby molecular clouds MBM 7, 12, 30, 32, 40, 41, and 55 were surveyed for tracers of dense gas, including the (1-0), (2-1), and (3-2) rotational lines of CS and the (1-0) lines of HCO(+) and HCN. MBM 7 and MBM 12 contain dense cores, while the other clouds contain little or no traces of dense gas. Comparison of the emission from dense gas tracers to that of (13)CO reveals that the former are more compact in angular size as well as line width. An extensive CS(2-1) survey of part of MBM 12 reveals that the emission is characterized by clumps on approximately 3 min scales as well as extended emission. Observations of the CS(1-0) and (3-2) lines using telescopes with matched beam sizes reveal that the volume density must be at least approximately 10(exp 4.5)/cc within the (3-2) emitting regions, which are approximately 0.03 pc in radius. Electron excitation of the CS rotational levels is ruled out (in the cores) by comparing the (3-2)/(1-0) line ratios with models including H2 and electron collisions. The volume density in the cores is substantially larger than in the portions of the cloud traced by CO emission. The density increases into the cores as r(exp -2), suggesting dynamical collapse. The masses of the cores are close to the virial mass, suggesting they are dynamically bound. The cores in MBM 7 and MBM 12 are thus likely to form stars; they are the nearest sites of star formation.

  4. Simulation of radiowave propagation in a dense urban environment

    OpenAIRE

    Chung, Chris V.

    2007-01-01

    One objective of this thesis was to investigate the effect of details, such as the windows of high-rise buildings, on the radiowave propagation in the dense urban environment through modeling and simulations. If adding windows does not significantly change the signal distribution on average, it may not be necessary to build such a detailed model. Simulations are performed using several levels of detail and the results compared to estimate the impact of the fine details on the signal level...

  5. Phases of Dense Matter in Supernovae and Neutron Stars

    Institute of Scientific and Technical Information of China (English)

    申虹; 王延楠

    2012-01-01

    We study the properties of dense matter at finite temperature with various proton fractions for use in supernova simulations. The relativistic mean-field theory is used to describe homogeneous nuclear matter, while the Thomas-Fermi approximation is adopted to describe inhomogeneous matter. We also discuss the equation of state of neutron star matter at zero temperature in a wide density range. The equation of state at high densities can be significantly softened by the inclusion of hyperons.

  6. Memory-efficient analysis of dense functional connectomes

    Directory of Open Access Journals (Sweden)

    Kristian Loewe

    2016-11-01

    Full Text Available The functioning of the human brain relies on the interplay and integration of numerous individual units within a complex network. To identify network configurations characteristic of specific cognitive tasks or mental illnesses, functional connectomes can be constructed based on the assessment of synchronous fMRI activity at separate brain sites, and then analyzed using graph-theoretical concepts. In most previous studies, relatively coarse parcellations of the brain were used to define regions as graphical nodes. Such parcellated connectomes are highly dependent on parcellation quality because regional and functional boundaries need to be relatively consistent for the results to be interpretable. In contrast, dense connectomes are not subject to this limitation, since the parcellation inherent to the data is used to define graphical nodes, also allowing for a more detailed spatial mapping of connectivity patterns. However, dense connectomes are associated with considerable computational demands in terms of both time and memory requirements. The memory required to explicitly store dense connectomes in main memory can render their analysis infeasible, especially when considering high-resolution data or analyses across multiple subjects or conditions. Here, we present an object-based matrix representation that achieves a very low memory footprint by computing matrix elements on demand instead of explicitly storing them. In doing so, memory required for a dense connectome is reduced to the amount needed to store the underlying time series data. Based on theoretical considerations and benchmarks, different matrix object implementations and additional programs (based on available Matlab functions and Matlab-based third-party software are compared with regard to their computational efficiency in terms of memory requirements and computation time. The matrix implementation based on on-demand computations has very low memory requirements thus enabling

  7. Topical Collaboration "Neutrinos and Nucleosynthesis in Hot and Dense Matter"

    Energy Technology Data Exchange (ETDEWEB)

    Allahverdi, Rouzbeh [Univ. of New Mexico, Albuquerque, NM (United States)

    2015-09-18

    This is the final technical report describing contributions from the University of New Mexico to Topical Collaboration on "Neutrinos and Nucleosynthesis in Hot and Dense Matter" in the period June 2010 through May 2015. During the funding period, the University of New Mexico successfully hired Huaiyu Duan as a new faculty member with the support from DOE, who has contributed to the Topical Collaboration through his research and collaborations.

  8. Recent progress on dense nuclear matter in skyrmion approaches

    Science.gov (United States)

    Ma, YongLiang; Rho, Mannque

    2017-03-01

    The Skyrme model provides a novel unified approach to nuclear physics. In this approach, single baryon, baryonic matter and medium-modified hadron properties are treated on the same footing. Intrinsic density dependence (IDD) reflecting the change of vacuum by compressed baryonic matter figures naturally in the approach. In this article, we review the recent progress on accessing dense nuclear matter by putting baryons treated as solitons, namely, skyrmions, on crystal lattice with accents on the implications in compact stars.

  9. Non-dense domain operator matrices and Cauchy problems

    CERN Document Server

    Lalaoui Rhali, S

    2002-01-01

    In this work, we study Cauchy problems with non-dense domain operator matrices. By assuming that the entries of an unbounded operator matrix are Hille-Yosida operators, we give a necessary and sufficient condition ensuring that the part of this operator matrix generates a semigroup in the closure of its domain. This allows us to prove the well-posedness of the corresponding Cauchy problem. Our results are applied to delay and neutral differential equations.

  10. Composition and thermodynamic properties of dense alkali metal plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Gabdullin, M.T. [NNLOT, al-Farabi Kazakh National University, 71 al-Farabi Str., Almaty 050035 (Kazakhstan); Ramazanov, T.S.; Dzhumagulova, K.N. [IETP, al-Farabi Kazakh National University, 71 al-Farabi Str., Almaty 050035 (Kazakhstan)

    2012-04-15

    In this work composition and thermodynamic properties of dense alkali metal plasmas (Li, Na) were investigated. Composition was derived by solving the Saha equations with corrections due to nonideality. The lowering of the ionization potentials was calculated on the basis of pseudopotentials by taking screening and quantum effects into account (copyright 2011 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  11. Structures of Strong Shock Waves in Dense Plasmas

    Institute of Scientific and Technical Information of China (English)

    JIANG Zhong-He; HE Yong; HU Xi-Wei; LV Jian-Hong; HU Ye-Min

    2007-01-01

    @@ Structures of strong shock waves in dense plasmas are investigated via the steady-state Navier-Stokes equations and Poisson equation. The structures from fluid simulation agree with the ones from kinetic simulation. The effects of the transport coefficients on the structures are analysed. The enhancements of the electronic heat conduction and ionic viscosity both will broaden the width of the shock fronts, and decrease the electric fields in the fronts.

  12. The EOS and neutrino interactions in dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Prakash, M.; Reddy, S. [Dept. of Physics and Astronomy, SUNY at Stony Brook, Stony Brook, NY (United States)

    1998-06-01

    The deleptonization and cooling times of a newly born neutron star depend on the equation of state (EOS) and neutrino opacities in dense matter. Through model calculations we show that effects of Pauli blocking and many-body correlations due to strong interactions reduce both the neutral and charged current neutrino cross sections by large factors compared to the case in which these effects are ignored. (orig.)

  13. Distribución de las Especies Colombianas de Uredinales según los Grupos Taxonómicos de sus Hospederos

    Directory of Open Access Journals (Sweden)

    Pardo Cardona Víctor Manuel

    1998-12-01

    Full Text Available Se presenta la distribución de las especies Colombianas de Uredinales (royas según los diferentes taxones de sus hospedantes. En Colombia, según los registros existentes, un total de 320 especies de este grupo de hongos pasarita 560 especies de plantas hospederas distribuidas en dos Phyla (Pteridophyta y Magnoliophyta, dentro de Magnoliophyta en dos clases (Madnoliopsida y Liliopsida, 10 subclases, 39 Ordenes, 66 Familias, 265 Géneros y 547 especies. Las familias botánicas con mayor número de especies de hospedantes de Uredinales son Asteraceae con 119 (64 especies de Uredianles y Poaceae con 66 (37, seguidas por Fabaceae con 40 (18, Malvaceae con mayor número de especies en Colombia son Puccinia Persoon con 142, Uromyces (Link Unger con 41, Phakopsora Dietel con 15, Crossopsora Sydow y Gerwasia Raciborski con 6 cada uno. En Colombia están registradas géneros y especies pertenecientes a 13 de las 14 familias reconocidas de Uredinales, así como 46 de los “120” géneros buenos reconocidos.

  14. Sinopsis taxonómica de la sección Apodostemon (Dioscorea; Dioscoreaceae Taxonomic synopsis of section Apodostemon (Dioscorea; Dioscoreaceae

    Directory of Open Access Journals (Sweden)

    Oswaldo Téllez-Valdés

    2007-12-01

    Full Text Available Se hace una revisión taxonómica sinóptica de la sección Apodostemon del género Dioscorea. Se reconocen 18 especies como sus miembros: 11 mexicano-centroamericanas y 7 sudamericanas. Se revisan los aspectos nomenclaturales, y las especies se agrupan con base en sus áreas generales de distribución. Se aportan datos sobre la morfología, relaciones y ecología, y se citan las colecciones importantes y la bibliografía pertinente. Finalmente, 7 especies tradicionalmente incluidas en la sección Apodostemon se excluyen en este estudio.A synoptic study of the taxonomy of the section Apodostemon of the genus Dioscorea is presented. Eighteen species are recognized as members, the nomenclatural issues are reviewed, and the species are arranged according to their general distribution patterns: 11 Mexican-Central American and 7 South American species. Notes on their morphology, relationships and ecological preferences are given, as well as important exsiccate and pertinent literature. Finally, 7 species traditionally included in section Apodostemon are excluded here.

  15. Ephemeroptera (Insecta de Caldas - Colombia, claves taxonómicas para los géneros y notas sobre su distribución

    Directory of Open Access Journals (Sweden)

    Yeisson Gutiérrez

    2015-01-01

    Full Text Available Con el objetivo de contribuir al conocimiento taxonómico y de distribución de los géneros del orden Ephemeroptera en Caldas, se estudiaron especímenes colectados entre mayo de 2008 y mayo de 2012 en 12 municipios del departamento de Caldas - Colombia, abarcando un rango altitudinal de 159 a 3433 m y un total de 55 fuentes hídricas. Se encontraron seis familias y 26 géneros de Ephemeroptera, de los cuáles Cabecar constituye un nuevo registro para Colombia, y también se realiza el primer registro de las ninfas de Tikuna y Ulmeritoides para el país. Americabaetis, Apobaetis, Callibaetis, Cloeodes, Guajirolus, Paracloeodes, Cabecar, Traveryphes, Tricorythodes, Terpides, Tikuna, Ulmeritoides, Caenis y Campsurus son nuevos registros para Caldas. Se encontraron diferencias en la composición de la fauna de Ephemeroptera en las diversas zonas altitudinales, siendo las zonas de altitud inferior a 1000 m las de mayor riqueza de géneros.

  16. Phylogeny and establishment of a new ciliate family, Wilbertomorphidae fam. nov. (Ciliophora, Karyorelictea), a highly specialized taxon represented by Wilbertomorpha colpoda gen. nov., spec. nov.

    Science.gov (United States)

    Xu, Yuan; Li, Jiamei; Song, Weibo; Warren, Alan

    2013-01-01

    The morphology and molecular phylogeny of a new marine interstitial karyorelictean ciliate, Wilbertomorpha colpoda gen. nov., spec. nov., isolated from a sandy beach at Qingdao, China, are investigated. The ciliature is mainly on the right surface with the left surface barren except for a single marginal kinety, which is typical of the order Loxodida. Nevertheless, other morphological features, such as the highly reduced buccal structure, the absence of a buccal cavity and the presence of extremely specialized cortical granules, prevent its assignation to any known family. Furthermore, the secondary structure of the variable region 2 of the SSU rRNA gene is unique among loxodids. Thus, we establish a new family, Wilbertomorphidae fam. nov. for the genus Wilbertomorpha. Phylogenetic analyses based on SSU rRNA gene sequence data suggest that this taxon is a sister group to the family Geleiidae which belongs to the order Protoheterotrichida. However, morphologically Wilbertomorpha bears a much stronger resemblance to Loxodidae which belongs to the order Loxodida. Based on these findings, we tentatively place Wilbertomorphidae nov. fam. incertae sedis within Karyorelictea.

  17. Does Kiitricha (Protista, Ciliophora, Spirotrichea) belong to Euplotida or represent a primordial spirotrichous taxon? With suggestion to establish a new subclass Protohypotrichia.

    Science.gov (United States)

    Li, Lifang; Shao, Chen; Song, Weibo; Lynn, Denis H; Chen, Zigui; Shin, Mann Kyoon

    2009-02-01

    The genus Kiitricha was long assumed to be the most primordial taxon in the Stichotrichia [hypotrichs sensu lato (s. l.)] based on its morphological features and was considered to be an intermediate between heterotrichs and the traditional hypotrichous assemblage. In order to evaluate the phylogenetic position of Kiitricha within the Hypotrichia, we sequenced the small-subunit rRNA gene and the alpha-tubulin gene for a Qingdao population of Kiitricha marina. Phylogenetic trees were constructed and compared to morphological and morphogenetic data. The results show that (i) Kiitricha is positioned near Phacodinium, both of which always form a sister clade to the assemblage including Stichotrichia, Hypotrichia, Oligotrichia and Choreotrichia, (ii) Kiitricha, which may represent an intermediate between heterotrichs (s. l.) and the Stichotrichia-Hypotrichia complex, is probably an ancestor-like form of the latter group and (iii) in contrast to morphological characters, both molecular and ontogenetic data support the separation of Kiitricha from the hypotrichs (s. l.). Thus, Kiitricha might be placed in the class Spirotrichea at about subclass level, next to Phaconidiidia, Hypotrichia and Stichotrichia, which supports the establishment of a new subclass Protohypotrichia n. subclass within the class Spirotrichea, with characterizations including slightly differentiated somatic ciliature (i.e. cirri on the ventral side generally uniform and non-grouped, no clearly defined marginal cirral rows, ciliature on the dorsal side mixed with cirri and dikinetids, no clearly differentiated dorsal kineties) and a unique but intermediate morphogenetic pattern of cortical structures between Hypotrichia and Stichotrichia.

  18. Clasificación taxonómica de los suelos del altiplano de San Félix, departamentos de Caldas.

    Directory of Open Access Journals (Sweden)

    Jaramillo J. Daniel F.

    2000-12-01

    Full Text Available En 5 perfiles de suelos derivados de piroclastos de la secuencia El Cedral, en el altiplano de San Félix, Municipio de Satamina (Caldas, se estudiaron las propiedades ándicas y espódicas de sus materiales, con el fin de clasificarlos taxonómicamente según el sistema del USDA (Soil Survey Staff, SSS, 1998. Con ayuda de la propuesta de ajuste de Shoji et al (1996. Ninguno de los suelos cumple todos los requisitos para materiales espódicos o ándicos pero por sus características fueron clasificados en el orden Andisol; sus propiedades quimcas los ubicaron en el subgrupo Acrudoxic de los grandes grupos Fluviales (3 de 5 perfiles y Hapludand, familia medial isomésica. Se sugiere incluir en la clasificación del subgrupo, la partícula Thaptic para resaltar la presencia de un horizonte Ab, cuando el límite superior de éste presente dentro de los 100 cm superiores del suelo, aún si no se cumple estrictamente los requerimientos de calor.

  19. Revisión taxonómica del género Pseudocyphellaria Vain. (Lobariaceae-Ascomycetes liquenizados para Colombia

    Directory of Open Access Journals (Sweden)

    Forero Enrique

    2006-06-01

    Full Text Available Se presenta la revisión taxonómica del género Pseudocyphellaria (Ascomycetes liqenizados para Colombia. El género Pseudocyphellaria Vain., con cerca de 110 especies en el mundo, hace parte de la familia Lobariaceae, una
    familia de líquenes de distribución cosmopolita, con mayor número de especies en la región austral. Para Colombia,
    con este estudio, se reconocen seis especies (P. aurata (Ach. Vain., P. crocata (L. Vain., P. intricata (Del. Vain., P. arvidssonii D. Galloway, P. clathrata (De Not. Malme, y P. encoensis R. Sant., de las cuales tres, P. arvidssonii D. Galloway, P. clathrata (De Not. Malme, y P. encoensis R. Sant., constituyen nuevos registros para el país. De igual manera, se presentan descripciones morfoanatómicas, complementadas con datos de pruebas químicas con K, P, C, KC y cromatografías en capa fina de las especies encontradas, así como, comentarios de datos ecológicos y de distribución geográfica. Se incluye una clave genérica ilustrada que permite el fácil reconocimiento del género dentro de la familia Lobariaceae y una clave ilustrada para las especies de Pseudocyphellaria que crecen en Colombia.

  20. Los Lamini (Cetartiodactyla: Camelidae extintos del yacimiento de Pilauco (Norpatagonia chilena: aspectos taxonómicos y tafonómicos preliminares

    Directory of Open Access Journals (Sweden)

    Labarca Encina, Rafael

    2013-12-01

    Full Text Available We present a preliminary description and taxonomic assignment of the Lamini fossil remains recovered from the paleontological site of Pilauco (late Pleistocene in southern Chile. Based on metric variables the fossils are temporarily asigned to cf. Hemiauchenia paradoxa Gervais & Ameghino 1880, waiting for new and more diagnostic remains. We present and discuss some taphonomic processes occurring within the site, starting from the study of the marks observed in the surface of the fossils, wich are consistent with the bog environment with occasional fluvial flooding described for the site.Se presenta la descripción y asignación taxonómica preliminar de los restos de Lamini recuperados en el sitio paleontológico de Pilauco (Pleistoceno tardío ubicado en el sur de Chile. Sobre la base de variables métricas los materiales son provisoriamente incluidos en cf. Hemiauchenia paradoxa Gervais & Ameghino 1880 a la espera de materiales más diagnósticos. Se discuten algunos procesos tafonómicos ocurridos al interior del yacimiento a partir del estudio de las marcas registradas en la superficie de los fósiles, las que son concordantes con el ambiente palustre con inundaciones esporádicas fluviales descrito para el sitio.

  1. Systematic relationships and cospeciation of bacterial endosymbionts and their carpenter ant host species: proposal of the new taxon Candidatus Blochmannia gen. nov.

    Science.gov (United States)

    Sauer, C; Stackebrandt, E; Gadau, J; Hölldobler, B; Gross, R

    2000-09-01

    The systematic relationships of intracellular bacteria of 13 Camponotus species (carpenter ants) from America and Europe were compared to those of their hosts. Phylogenetic trees of the bacteria and the ants were based on 16S rDNA (rrs) gene sequences and mitochondrial cytochrome oxidase subunit I (COI) gene sequences, respectively. The bacterial endosymbionts of Camponotus spp. form a distinct lineage in the y-subclass of the Proteobacteria. The taxa most closely related to these bacteria are endosymbionts of aphids and the tsetse fly. The bacterial and host phylogenies deduced from the sequence data show a high degree of congruence, providing significant evidence for cospeciation of the bacteria and the ants and a maternal transmission route of the symbionts. The cloned rrs genes of the endosymbionts contain putative intervening sequences (IVSs) with a much lower G+C content than the mean of the respective rrs genes. By in situ hybridization specific 16S rDNA oligonucleotide probes verified the presence of the bacteria within tissues of three of the eukaryotic hosts. It is proposed that the endosymbionts of these three carpenter ants be assigned to a new taxon 'Candidatus Blochmannia gen. nov.' with the symbionts of the individual ants being species named according to their host, 'Candidatus Blochmannia floridanus sp. nov.', 'Candidatus Blochmannia herculeanus sp. nov.' and 'Candidatus Blochmannia rufipes sp. nov.'.

  2. Las Calamitáceas españolas. Índice taxonómico y clave analítica

    Directory of Open Access Journals (Sweden)

    Diéguez, M. C.

    1986-02-01

    Full Text Available The present work consists of the check-list of the Calamitae para-espcies collected in Spain with the synonims used. These have been compiled in a1phabetical order for case of reference. and is followed by an evaluation of them, considering some elected characters for its rapid identification, with whose we have made one key the para-species, which, helps its determination from the collecting place.

    En el presente trabajo se realiza un índice taxonómico de para-especies de Calamitáceas recogidas en España, con sus principales sinonimias. disponiéndose en orden alfabético para facilitar su utilización. Este índice es seguido por una evaluación de dichas para-especies. en atención a caracteres que faciliten su identificación y a partir de los cuales proponemos una clave analítica, que permita su determinación en el lugar de recogida.

  3. Does cross-taxon analysis show similarity in diversity patterns between vascular plants and bryophytes? Some answers from a literature review.

    Science.gov (United States)

    Bagella, Simonetta

    2014-04-01

    The objective of this study was to clarify the taxon surrogacy hypothesis relative to vascular plants and bryophytes. A literature review was conducted to obtain papers that met the following criteria: (i) they examined species richness values; or (ii) they evaluated the species richness within the same study sites, or under the same spatial variation conditions. Twenty-seven papers were accessed. The richness of the two taxa, compared in 32 cases, positively co-varied in about half of the comparisons. The response to the spatial variation in environmental or human-induced factors of the two taxa in terms of species richness was rather variable. Based on current knowledge, the main documented findings regard forest habitats and nival gradients. In forest habitats, co-variation in species richness is likely when similar environments are analysed and seems to be strengthened for boreal forests. Along the nival gradient, a different response in terms of richness of the two taxa suggests that vascular plants cannot be considered good surrogates for bryophytes.

  4. Micriamoeba tesseris nov. gen. nov. sp.: a new taxon of free-living small-sized Amoebae non-permissive to virulent Legionellae.

    Science.gov (United States)

    Atlan, Danièle; Coupat-Goutaland, Bénédicte; Risler, Arnaud; Reyrolle, Monique; Souchon, Maud; Briolay, Jérôme; Jarraud, Sophie; Doublet, Patricia; Pélandakis, Michel

    2012-11-01

    Investigation of soil amoebae in 11 cooling towers allowed us to isolate a major unknown small-sized amoeba population (SZA). However, SZA did not appear to be specific to cooling tower ecosystems since they are also a major amoeba population found in muds isolated from different points of a water treatment plant. The SSU-rDNA sequences from SZA strains did not match any known database sequences, suggesting that SZA constitutes a new amoeba taxon. We isolated and further described one of the SZA that we named Micriamoeba tesseris. The phylogenetic analyses showed that Micriamoeba tesseris belongs to the Amebozoa and branched together with genus Echinamoeba+Vermamoeba vermiformis. Phylogenetic analyses within the Micriamoeba group distinguished different subgroups of Micriamoeba strains according to their origin, i.e. cooling tower or mud. Although Micriamoeba are able to feed on viable E. coli cells, they do not uptake virulent Legionella pneumophila strains, thus enabling them to avoid infection by Legionella. Consequently, Micriamoeba is not directly involved in L. pneumophila multiplication. However, an indirect role of Micriamoeba in Legionella risk is discussed.

  5. Leishmania mexicana: aspectos taxonómicos y rareza de la infección humana en Três Braços, Bahia, Brasil

    Directory of Open Access Journals (Sweden)

    César Augusto Cuba Cuba

    1984-09-01

    Full Text Available Del estúdio de 51 stocks de Leishmania aislados de pacientes humanos de leishmaniasis cutaneomucosa en Três Braços, Bahia, Brasil, los autores describen, en detalle, el análisis de los dos únicos stocks de L. mexicana, identificando uno de ellos como L. mexicana amazonensis. El otro aislado permanece en posición taxonómica no definida pues considerándosele como un miembro de L. mexicana, encuéntranse dificultades para su identificación subespecífica. Evaluan también los parâmetros biológicos e isoenzimáticos y discuten el papel de los anticuerpos monoclonales en la tipificación de éstos stocks. Los autores remarcan la rareza de la transmisión de parásitos del complejo L. mexicana en esta región, aun cuando estudien epidemiológicamente por mais de 8 anos la infección humana.

  6. Rheology of dense suspensions of non colloidal particles

    Science.gov (United States)

    Guazzelli, Élisabeth

    2017-06-01

    Dense suspensions are materials with broad applications both in industrial processes (e.g. waste disposal, concrete, drilling muds, metalworking chip transport, and food processing) and in natural phenomena (e.g. flows of slurries, debris, and lava). Despite its long research history and its practical relevance, the mechanics of dense suspensions remain poorly understood. The major difficulty is that the grains interact both by hydrodynamic interactions through the liquid and by mechanical contact. These systems thus belong to an intermediate regime between pure suspensions and granular flows. We show that we can unify suspension and granular rheology under a common framework by transferring the frictional approach of dry granular media to wet suspensions of spherical particles. We also discuss non-Newtonian behavior such as normal-stress differences and shear-induced migration. Beyond the classical problem of dense suspension of hard spheres which is far from being completely resolved, there are also entirely novel avenues of study concerning more complex mixtures of particles and fluids such as those involving other types of particles (e.g. fibers) or non-Newtonian fluids that we will also address.

  7. Rheology of dense suspensions of non colloidal particles

    Directory of Open Access Journals (Sweden)

    Guazzelli Élisabeth

    2017-01-01

    Full Text Available Dense suspensions are materials with broad applications both in industrial processes (e.g. waste disposal, concrete, drilling muds, metalworking chip transport, and food processing and in natural phenomena (e.g. flows of slurries, debris, and lava. Despite its long research history and its practical relevance, the mechanics of dense suspensions remain poorly understood. The major difficulty is that the grains interact both by hydrodynamic interactions through the liquid and by mechanical contact. These systems thus belong to an intermediate regime between pure suspensions and granular flows. We show that we can unify suspension and granular rheology under a common framework by transferring the frictional approach of dry granular media to wet suspensions of spherical particles. We also discuss non-Newtonian behavior such as normal-stress differences and shear-induced migration. Beyond the classical problem of dense suspension of hard spheres which is far from being completely resolved, there are also entirely novel avenues of study concerning more complex mixtures of particles and fluids such as those involving other types of particles (e.g. fibers or non-Newtonian fluids that we will also address.

  8. Connectivity of Confined Dense Networks: Boundary Effects and Scaling Laws

    CERN Document Server

    Coon, Justin P; Georgiou, Orestis

    2012-01-01

    In this paper, we study the probability that a dense network confined within a given geometry is fully connected. We employ a cluster expansion approach often used in statistical physics to analyze the effects that the boundaries of the geometry have on connectivity. To maximize practicality and applicability, we adopt four important point-to-point link models based on outage probability in our analysis: single-input single-output (SISO), single-input multiple-output (SIMO), multiple-input single-output (MISO), and multiple-input multiple-output (MIMO). Furthermore, we derive diversity and power scaling laws that dictate how boundary effects can be mitigated (to leading order) in confined dense networks for each of these models. Finally, in order to demonstrate the versatility of our theory, we analyze boundary effects for dense networks comprising MIMO point-to-point links confined within a right prism, a polyhedron that accurately models many geometries that can be found in practice. We provide numerical re...

  9. Enhanced Productivity of Chemical Processes Using Dense Fluidized Beds

    Energy Technology Data Exchange (ETDEWEB)

    Sibashis Banerjee; Alvin Chen; Rutton Patel; Dale Snider; Ken Williams; Timothy O' Hern; Paul Tortora

    2008-02-29

    The work detailed in this report addresses Enabling Technologies within Computational Technology by integrating a “breakthrough” particle-fluid computational technology into traditional Process Science and Engineering Technology. The work completed under this DOE project addresses five major development areas 1) gas chemistry in dense fluidized beds 2) thermal cracking of liquid film on solids producing gas products 3) liquid injection in a fluidized bed with particle-to-particle liquid film transport 4) solid-gas chemistry and 5) first level validation of models. Because of the nature of the research using tightly coupled solids and fluid phases with a Lagrangian description of the solids and continuum description of fluid, the work provides ground-breaking advances in reactor prediction capability. This capability has been tested against experimental data where available. The commercial product arising out of this work is called Barracuda and is suitable for a wide (dense-to-dilute) range of industrial scale gas-solid flows with and without reactions. Commercial applications include dense gas-solid beds, gasifiers, riser reactors and cyclones.

  10. High accuracy and visibility-consistent dense multiview stereo.

    Science.gov (United States)

    Vu, Hoang-Hiep; Labatut, Patrick; Pons, Jean-Philippe; Keriven, Renaud

    2012-05-01

    Since the initial comparison of Seitz et al., the accuracy of dense multiview stereovision methods has been increasing steadily. A number of limitations, however, make most of these methods not suitable to outdoor scenes taken under uncontrolled imaging conditions. The present work consists of a complete dense multiview stereo pipeline which circumvents these limitations, being able to handle large-scale scenes without sacrificing accuracy. Highly detailed reconstructions are produced within very reasonable time thanks to two key stages in our pipeline: a minimum s-t cut optimization over an adaptive domain that robustly and efficiently filters a quasidense point cloud from outliers and reconstructs an initial surface by integrating visibility constraints, followed by a mesh-based variational refinement that captures small details, smartly handling photo-consistency, regularization, and adaptive resolution. The pipeline has been tested over a wide range of scenes: from classic compact objects taken in a laboratory setting, to outdoor architectural scenes, landscapes, and cultural heritage sites. The accuracy of its reconstructions has also been measured on the dense multiview benchmark proposed by Strecha et al., showing the results to compare more than favorably with the current state-of-the-art methods.

  11. The Dense Gas in the Central Kiloparsec of NGC 6946

    CERN Document Server

    Levine, E S; Meijerink, R; Blitz, Leo

    2007-01-01

    We present observations of the HCN and HCO+ J=1-0 transitions in the center of the nearby spiral galaxy NGC 6946 made with the BIMA and CARMA interferometers. Using the BIMA SONG CO map, we investigate the change in the I_HCN/I_CO and I_ HCO/I_CO integrated intensity ratios as a function of radius in the central kiloparsec of the galaxy, and find that they are strongly concentrated at the center. We use the 2MASS K_S band image to find the stellar surface density, and then construct a map of the hydrostatic midplane pressure. We apply a PDR model to the observed I_HCN/I_HCO+ integrated intensity ratio to calculate the number density of molecular hydrogen in the dense gas tracer emitting region, and find that it is roughly constant at 10^5 cm^-3 across our map. We explore two hypotheses for the distribution of the dense gas. If the HCN and HCO+ emission comes from self-gravitating density peaks inside of a less dense gas distribution, there is a linear proportionality between the internal velocity dispersion o...

  12. Dense Cloud Formation and Star Formation in a Barred Galaxy

    CERN Document Server

    Nimori, M; Sorai, K; Watanabe, Y; Hirota, A; Namekata, D

    2012-01-01

    We investigate the properties of massive, dense clouds formed in a barred galaxy and their possible relation to star formation, performing a two-dimensional hydrodynamical simulation with the gravitational potential obtained from the 2Mass data from the barred spiral galaxy, M83. Since the environment for cloud formation and evolution in the bar region is expected to be different from that in the spiral arm region, barred galaxies are a good target to study the environmental effects on cloud formation and the subsequent star formation. Our simulation uses for an initial 80 Myr an isothermal flow of non-self gravitating gas in the barred potential, then including radiative cooling, heating and self-gravitation of the gas for the next 40 Myr, during which dense clumps are formed. We identify many cold, dense gas clumps for which the mass is more than $10^4M_{\\odot}$ (a value corresponding to the molecular clouds) and study the physical properties of these clumps. The relation of the velocity dispersion of the i...

  13. Exotic x-ray emission from dense plasmas

    Science.gov (United States)

    Rosmej, F. B.; Dachicourt, R.; Deschaud, B.; Khaghani, D.; Dozières, M.; Šmíd, M.; Renner, O.

    2015-11-01

    Exotic x-ray emission from dense matter is identified as the complex high intensity satellite emission from autoionizing states of highly charged ions. Among a vast amount of possible transitions, double K-hole hollow ion (HI) x-ray emission K0L X → K1L X-1 + hν hollow is of exceptional interest due to its advanced diagnostic potential for matter under extreme conditions where opacity and radiation fields play important roles. Transient ab initio simulations identify intense short pulse radiation fields (e.g., those emitted by x-ray free electron lasers) as possible driving mechanisms of HI x-ray emission via two distinct channels: first, successive photoionization of K-shell electrons, second, photoionization followed by resonant photoexciation among various ionic charge states that are simultaneously present in high density matter. We demonstrated that charge exchange of intermixing inhomogenous plasmas as well as collisions driven by suprathermal electrons are possible mechanisms to populate HIs to observable levels in dense plasmas, particularly in high current Z-pinch plasmas and high intensity field-ionized laser produced plasmas. Although the HI x-ray transitions were repeatedly identified in many other cases of dense optical laser produced plasmas on the basis of atomic structure calculations, their origin is far from being understood and remains one of the last holy grails of high intensity laser-matter interaction.

  14. Isotopologues of dense gas tracers in NGC 1068

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Junzhi; Qiu, Jianjie [Shanghai Astronomical Observatory, Chinese Academy of Sciences, 80 Nandan Road, 200030, Shanghai (China); Zhang, Zhi-Yu [Institute for Astronomy, University of Edinburgh, Royal Observatory, Blackford Hill, Edinburgh EH9 3HJ (United Kingdom); Shi, Yong [School of Astronomy and Space Science, Nanjing University, Nanjing, 210093 (China); Zhang, Jiangshui [Center For Astrophysics, GuangZhou University, 510006, GuangZhou (China); Fang, Min, E-mail: jzwang@shao.ac.cn [ESO, Karl Schwarzschild Strasse 2, D-85748 Garching bei Munich (Germany)

    2014-11-20

    We present observations of isotopic lines of dense gas tracers toward the nuclear region of nearby Seyfert 2 galaxy NGC 1068 with the IRAM 30 m telescope and the Atacama Pathfinder Experiment (APEX) 12 m telescope. We detected four isotopic lines (H{sup 13}CN 1-0, H{sup 13}CO{sup +} 1-0, HN{sup 13}C 1-0, and HC{sup 18}O{sup +} 1-0) at the 3 mm band with the IRAM 30 m telescope and obtained upper limits of other lines. We calculated optical depths of dense gas tracers with the detected isotopic lines of HCN 1-0, HCO{sup +} 1-0, and HNC 1-0. We find that the {sup 14}N/{sup 15}N abundance ratio is greater than 420 if we adopt the upper limit of HC{sup 15}N(1-0) emission. Combining this with fluxes of 1-0 lines from IRAM 30 m observations and the upper limit of 3-2 lines from APEX 12 m observations, we also estimated the excitation condition of molecular gas in the nuclear region of NGC 1068, which is less dense than that in the extreme starburst regions of galaxies.

  15. An extended GS method for dense linear systems

    Science.gov (United States)

    Niki, Hiroshi; Kohno, Toshiyuki; Abe, Kuniyoshi

    2009-09-01

    Davey and Rosindale [K. Davey, I. Rosindale, An iterative solution scheme for systems of boundary element equations, Internat. J. Numer. Methods Engrg. 37 (1994) 1399-1411] derived the GSOR method, which uses an upper triangular matrix [Omega] in order to solve dense linear systems. By applying functional analysis, the authors presented an expression for the optimum [Omega]. Moreover, Davey and Bounds [K. Davey, S. Bounds, A generalized SOR method for dense linear systems of boundary element equations, SIAM J. Comput. 19 (1998) 953-967] also introduced further interesting results. In this note, we employ a matrix analysis approach to investigate these schemes, and derive theorems that compare these schemes with existing preconditioners for dense linear systems. We show that the convergence rate of the Gauss-Seidel method with preconditioner PG is superior to that of the GSOR method. Moreover, we define some splittings associated with the iterative schemes. Some numerical examples are reported to confirm the theoretical analysis. We show that the EGS method with preconditioner produces an extremely small spectral radius in comparison with the other schemes considered.

  16. Carbon chemistry in dense molecular clouds: Theory and observational constraints

    Science.gov (United States)

    Blake, Geoffrey A.

    1990-01-01

    For the most part, gas phase models of the chemistry of dense molecular clouds predict the abundances of simple species rather well. However, for larger molecules and even for small systems rich in carbon these models often fail spectacularly. Researchers present a brief review of the basic assumptions and results of large scale modeling of the carbon chemistry in dense molecular clouds. Particular attention is to the influence of the gas phase C/O ratio in molecular clouds, and the likely role grains play in maintaining this ratio as clouds evolve from initially diffuse objects to denser cores with associated stellar and planetary formation. Recent spectral line surveys at centimeter and millimeter wavelengths along with selected observations in the submillimeter have now produced an accurate inventory of the gas phase carbon budget in several different types of molecular clouds, though gaps in our knowledge clearly remain. The constraints these observations place on theoretical models of interstellar chemistry can be used to gain insights into why the models fail, and show also which neglected processes must be included in more complete analyses. Looking toward the future, larger molecules are especially difficult to study both experimentally and theoretically in such dense, cold regions, and some new methods are therefore outlined which may ultimately push the detectability of small carbon chains and rings to much heavier species.

  17. Ab initio thermodynamic results for warm dense matter

    Science.gov (United States)

    Bonitz, Michael

    2016-10-01

    Warm dense matter (WDM) - an exotic state where electrons are quantum degenerate and ions may be strongly correlated - is ubiquitous in dense astrophysical plasmas and highly compressed laboratory systems including inertial fusion. Accurate theoretical predictions require precision thermodynamic data for the electron gas at high density and finite temperature around the Fermi temperature. First such data have been obtained by restricted path integral Monte Carlo (restricted PIMC) simulations and transformed into analytical fits for the free energy. Such results are also key input for novel finite temperature density functional theory. However, the RPIMC data of Ref. 1 are limited to moderate densities, and even there turned out to be surprisingly inaccurate, which is a consequence of the fermion sign problem. These problems were recently overcome by the development of alternative QMC approaches in Kiel (configuration PIMC and permutation blocking PIMC) and Imperial College (Density matrix QMC). The three methods have their strengths and limitations in complementary parameter regions and provide highly accurate thermodynamic data for the electronic contributions in WDM. While the original results were obtained for small particle numbers, recently accurate finite size corrections were derived allowing to compute ab initio thermodynamic data with an unprecedented accuracy of better than 0.3 percent. This provides the final step for the use as benchmark data for experiments and models of Warm dense matter. Co-authors: T. Schoof, S. Groth, T. Dornheim, F. D. Malone, M. Foulkes, and T. Sjostroem, Funded by: DFG via SFB-TR24 and project BO1366-10.

  18. Capillary sample

    Science.gov (United States)

    ... several times a day using capillary blood sampling. Disadvantages to capillary blood sampling include: Only a limited ... do not constitute endorsements of those other sites. Copyright 1997-2017, A.D.A.M., Inc. Duplication ...

  19. Microstructure and thermal diffusivity in hydroxyapatite, dense bone and metals for biomedical applications

    Energy Technology Data Exchange (ETDEWEB)

    Mendez, M.; Diaz G, J.A.I.; Calderon, A. [CICATA-IPN, Legaria 694, 11500 Mexico D.F. (Mexico)

    2006-07-01

    We report X-Ray diffraction and SEM analysis in hydroxyapatite obtained in powder form, as well as a SEM analysis in titanium, 316l stainless steel and dense bone in longitudinal and transversal cutting. Moreover, we realized a thermal diffusivity measurement in these materials in order to obtain the thermal compatibility between them. We use the photoacoustic technique in heat transmission configuration in order to obtain the thermal diffusivity values in the samples. Our results show a good thermal compatibility (74%) between hydroxyapatite and bone. Finally, it was obtained a one order of magnitude difference between the thermal diffusivity values of metallic samples and those corresponding values to bone and HA being this difference greater in titanium than in stainless steel, which is important to consider in some biomedical and dental applications. (Author)

  20. Synthesis of Dense, Fine-Grained YIG Ceramics by Two-Step Sintering

    Science.gov (United States)

    Li, X. X.; Zhou, J. J.; Deng, J. X.; Zheng, H.; Zheng, L.; Zheng, P.; Qin, H. B.

    2016-10-01

    A two-step sintering (TSS) process has been used to fabricate yttrium iron garnet (YIG) ceramics with high density and fine grain size. The densification, microstructure, and magnetic properties were investigated. The sample prepared by the TSS process with first-step sintering temperature ( T 1) of 1350°C, second-step sintering temperature ( T 2) of 1300°C, and holding time of 18 h had density above 99% of theoretical and exhibited uniform microstructure with small average grain size (2.4 μm). The saturation magnetization ( M S) of this sample reached 27.4 emu/g. These results indicate that the TSS process can effectively suppress grain-boundary migration while maintaining active grain-boundary diffusion to obtain dense, fine-grained YIG ceramics with appropriate magnetic properties.

  1. EARLY STAGES OF CLUSTER FORMATION: FRAGMENTATION OF MASSIVE DENSE CORES DOWN TO {approx}< 1000 AU

    Energy Technology Data Exchange (ETDEWEB)

    Palau, Aina; Girart, Josep M. [Institut de Ciencies de l' Espai (CSIC-IEEC), Campus UAB-Facultat de Ciencies, Torre C5-parell 2, E-08193 Bellaterra, Catalunya (Spain); Fuente, Asuncion [Observatorio Astronomico Nacional, P.O. Box 112, E-28803 Alcala de Henares, Madrid (Spain); Estalella, Robert [Departament d' Astronomia i Meteorologia (IEEC-UB), Institut de Ciencies del Cosmos, Universitat de Barcelona, Marti Franques, 1, E-08028 Barcelona (Spain); Ho, Paul T. P.; Zhang, Qizhou [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Sanchez-Monge, Alvaro; Fontani, Francesco; Cesaroni, Riccardo [Osservatorio Astrofisico di Arcetri, INAF, Lago E. Fermi 5, I-50125 Firenze (Italy); Busquet, Gemma [INAF-Istituto di Astrofisica e Planetologia Spaziali, Area di Recerca di Tor Vergata, Via Fosso Cavaliere 100, I-00133 Roma (Italy); Commercon, Benoit; Hennebelle, Patrick [Laboratoire de Radioastronomie, UMR CNRS 8112, Ecole Normale Superieure et Observatoire de Paris, 24 rue Lhomond, F-75231 Paris Cedex 05 (France); Boissier, Jeremie [Istituto di Radioastronomia, INAF, Via Gobetti 101, I-40129 Bologna (Italy); Zapata, Luis A., E-mail: palau@ieec.uab.es [Centro de Radioastronomia y Astrofisica, Universidad Nacional Autonoma de Mexico, P.O. Box 3-72, 58090 Morelia, Michoacan (Mexico)

    2013-01-10

    In order to study the fragmentation of massive dense cores, which constitute the cluster cradles, we observed the continuum at 1.3 mm and the CO (2-1) emission of four massive cores with the Plateau de Bure Interferometer in the most extended configuration. We detected dust condensations down to {approx}0.3 M {sub Sun} and separate millimeter sources down to 0.''4 or {approx}< 1000 AU, comparable to the sensitivities and separations reached in optical/infrared studies of clusters. The CO (2-1) high angular resolution images reveal high-velocity knots usually aligned with previously known outflow directions. This, in combination with additional cores from the literature observed at similar mass sensitivity and spatial resolution, allowed us to build a sample of 18 protoclusters with luminosities spanning three orders of magnitude. Among the 18 regions, {approx}30% show no signs of fragmentation, while 50% split up into {approx}> 4 millimeter sources. We compiled a list of properties for the 18 massive dense cores, such as bolometric luminosity, total mass, and mean density, and found no correlation of any of these parameters with the fragmentation level. In order to investigate the combined effects of the magnetic field, radiative feedback, and turbulence in the fragmentation process, we compared our observations to radiation magnetohydrodynamic simulations and found that the low-fragmented regions are reproduced well in the magnetized core case, while the highly fragmented regions are consistent with cores where turbulence dominates over the magnetic field. Overall, our study suggests that the fragmentation in massive dense cores could be determined by the initial magnetic field/turbulence balance in each particular core.

  2. The Dynamics of Dense Cores in the Perseus Molecular Cloud II: The Relationship Between Dense Cores and the Cloud

    CERN Document Server

    Kirk, Helen; Johnstone, Doug; Goodman, Alyssa

    2010-01-01

    We utilize the extensive datasets available for the Perseus molecular cloud to analyze the relationship between the kinematics of small-scale dense cores and the larger structures in which they are embedded. The kinematic measures presented here can be used in conjunction with those discussed in our previous work as strong observational constraints that numerical simulations (or analytic models) of star formation should match. We find that dense cores have small motions with respect to the 13CO gas, about one third of the 13CO velocity dispersion along the same line of sight. Within each extinction region, the core-to-core velocity dispersion is about half of the total (13CO) velocity dispersion seen in the region. Large-scale velocity gradients account for roughly half of the total velocity dispersion in each region, similar to what is predicted from large-scale turbulent modes following a power spectrum of P(k) ~ k^{-4}.

  3. Hallazgo de Pelliciera Rhizophorae Triana & Planchon (Theaceae en la Costa del Atlántico, con observaciones taxonómicas y biogeográficas preliminares Hallazgo de Pelliciera Rhizophorae Triana & Planchon (Theaceae en la Costa del Atlántico, con observaciones taxonómicas y biogeográficas preliminares

    Directory of Open Access Journals (Sweden)

    Calderón Sáenz Eduardo

    1982-03-01

    Full Text Available

    Pelliciera rhizopharae Triana & Planchon es reported for the first time in the Atlantic Coast. This species has been considered so far as an endemics in the tropical American Pacific coast. Some biogeographical and taxonomic observations are included, as well as a description of the material found.

    Se reporta por primera vez el "mangle piñuelo" Pelliciera rhizophorae Triana & Planchon para la costa del Atlántico. Esta especie es considerada hasta la fecha endémica en la costa tropical del Pacifico americana. Acompañan el reporte algunas observaciones de carácter biogeográfico y taxonómico, así como una descripción de los ejemplares encontrados.

  4. Language sampling

    DEFF Research Database (Denmark)

    Rijkhoff, Jan; Bakker, Dik

    1998-01-01

    This article has two aims: [1] to present a revised version of the sampling method that was originally proposed in 1993 by Rijkhoff, Bakker, Hengeveld and Kahrel, and [2] to discuss a number of other approaches to language sampling in the light of our own method. We will also demonstrate how our ...... sampling method is used with different genetic classifications (Voegelin & Voegelin 1977, Ruhlen 1987, Grimes ed. 1997) and argue that —on the whole— our sampling technique compares favourably with other methods, especially in the case of exploratory research.......This article has two aims: [1] to present a revised version of the sampling method that was originally proposed in 1993 by Rijkhoff, Bakker, Hengeveld and Kahrel, and [2] to discuss a number of other approaches to language sampling in the light of our own method. We will also demonstrate how our...

  5. 1991 US-Japan workshop on Nuclear Fusion in Dense Plasmas. Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    Ichimaru, S. [ed.] [Tokyo Univ. (Japan). Dept. of Physics; Tajima, T. [ed.] [Texas Univ., Austin, TX (United States). Inst. for Fusion Studies

    1991-10-01

    The scientific areas covered at the Workshop may be classified into the following subfields: (1) basic theory of dense plasma physics and its interface with atomic physics and nuclear physics; (2) physics of dense z-pinches, ICF plasmas etc; (3) stellar interior plasmas; (4) cold fusion; and (5) other dense plasmas.

  6. 1991 US-Japan workshop on Nuclear Fusion in Dense Plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Ichimaru, S. (ed.) (Tokyo Univ. (Japan). Dept. of Physics); Tajima, T. (ed.) (Texas Univ., Austin, TX (United States). Inst. for Fusion Studies)

    1991-10-01

    The scientific areas covered at the Workshop may be classified into the following subfields: (1) basic theory of dense plasma physics and its interface with atomic physics and nuclear physics; (2) physics of dense z-pinches, ICF plasmas etc; (3) stellar interior plasmas; (4) cold fusion; and (5) other dense plasmas.

  7. Lattice Boltzmann Simulation of Permeability and Tortuosity for Flow through Dense Porous Media

    Directory of Open Access Journals (Sweden)

    Ping Wang

    2014-01-01

    Full Text Available Discrete element method (DEM is used to produce dense and fixed porous media with rigid mono spheres. Lattice Boltzmann method (LBM is adopted to simulate the fluid flow in interval of dense spheres. To simulating the same physical problem, the permeability is obtained with different lattice number. We verify that the permeability is irrelevant to the body force and the media length along flow direction. The relationships between permeability, tortuosity and porosity, and sphere radius are researched, and the results are compared with those reported by other authors. The obtained results indicate that LBM is suited to fluid flow simulation of porous media due to its inherent theoretical advantages. The radius of sphere should have ten lattices at least and the media length along flow direction should be more than twenty radii. The force has no effect on the coefficient of permeability with the limitation of slow fluid flow. For mono spheres porous media sample, the relationship of permeability and porosity agrees well with the K-C equation, and the tortuosity decreases linearly with increasing porosity.

  8. The rate and latency of star formation in dense, massive clumps in the Milky Way

    CERN Document Server

    Heyer, M; Urquhart, J S; Csengeri, T; Wienen, M; Leurini, S; Menten, K; Wyrowski, F

    2016-01-01

    Newborn stars form within the localized, high density regions of molecular clouds. The sequence and rate at which stars form in dense clumps and the dependence on local and global environments are key factors in developing descriptions of stellar production in galaxies. We seek to observationally constrain the rate and latency of star formation in dense massive clumps that are distributed throughout the Galaxy and to compare these results to proposed prescriptions for stellar production. A sample of 24 micron-based Class~I protostars are linked to dust clumps that are embedded within molecular clouds selected from the APEX Telescope Large Area Survey of the Galaxy. We determine the fraction of star-forming clumps, f*, that imposes a constraint on the latency of star formation in units of a clump's lifetime. Protostellar masses are estimated from models of circumstellar environments of young stellar objects from which star formation rates are derived. Physical properties of the clumps are calculated from 870 m...

  9. Early stages of cluster formation: fragmentation of massive dense cores down to ~1000 AU

    CERN Document Server

    Palau, Aina; Girart, Josep M; Estalella, Robert; Ho, Paul T P; Sánchez-Monge, Álvaro; Fontani, Francesco; Busquet, Gemma; Commercon, Benoît; Hennebelle, Patrick; Boissier, Jérémie; Zhang, Qizhou; Cesaroni, Riccardo; Zapata, Luis A

    2012-01-01

    In order to study the fragmentation of massive dense cores, which constitute the cluster cradles, we observed with the PdBI in the most extended configuration the continuum at 1.3 mm and the CO(2-1) emission of four massive cores. We detect dust condensations down to ~0.3 Msun and separate millimeter sources down to 0.4" or ~1000 AU, comparable to the sensitivities and separations reached in optical/infrared studies of clusters. The CO(2-1) high angular resolution images reveal high-velocity knots usually aligned with previously known outflow directions. This, in combination with additional cores from the literature observed at similar mass sensitivity and spatial resolution, allowed us to build a sample of 18 protoclusters with luminosities spanning 3 orders of magnitude. Among the 18 regions, ~30% show no signs of fragmentation, while 50% split up into ~4 millimeter sources. We compiled a list of properties for the 18 massive dense cores, such as bolometric luminosity, total mass, and mean density, and foun...

  10. Patterns of Food Parenting Practices and Children’s Intake of Energy-Dense Snack Foods

    Directory of Open Access Journals (Sweden)

    Dorus W. M. Gevers

    2015-05-01

    Full Text Available Most previous studies of parental influences on children’s diets included just a single or a few types of food parenting practices, while parents actually employ multiple types of practices. Our objective was to investigate the clustering of parents regarding food parenting practices and to characterize the clusters in terms of background characteristics and children’s intake of energy-dense snack foods. A sample of Dutch parents of children aged 4–12 was recruited by a research agency to fill out an online questionnaire. A hierarchical cluster analysis (n = 888 was performed, followed by k-means clustering. ANOVAs, ANCOVAs and chi-square tests were used to investigate associations between cluster membership, parental and child background characteristics, as well as children’s intake of energy-dense snack foods. Four distinct patterns were discovered: “high covert control and rewarding”, “low covert control and non-rewarding”, “high involvement and supportive” and “low involvement and indulgent”. The “high involvement and supportive” cluster was found to be most favorable in terms of children’s intake. Several background factors characterized cluster membership. This study expands the current knowledge about parental influences on children’s diets. Interventions should focus on increasing parental involvement in food parenting.

  11. Patterns of Food Parenting Practices and Children's Intake of Energy-Dense Snack Foods.

    Science.gov (United States)

    Gevers, Dorus W M; Kremers, Stef P J; de Vries, Nanne K; van Assema, Patricia

    2015-05-27

    Most previous studies of parental influences on children's diets included just a single or a few types of food parenting practices, while parents actually employ multiple types of practices. Our objective was to investigate the clustering of parents regarding food parenting practices and to characterize the clusters in terms of background characteristics and children's intake of energy-dense snack foods. A sample of Dutch parents of children aged 4-12 was recruited by a research agency to fill out an online questionnaire. A hierarchical cluster analysis (n = 888) was performed, followed by k-means clustering. ANOVAs, ANCOVAs and chi-square tests were used to investigate associations between cluster membership, parental and child background characteristics, as well as children's intake of energy-dense snack foods. Four distinct patterns were discovered: "high covert control and rewarding", "low covert control and non-rewarding", "high involvement and supportive" and "low involvement and indulgent". The "high involvement and supportive" cluster was found to be most favorable in terms of children's intake. Several background factors characterized cluster membership. This study expands the current knowledge about parental influences on children's diets. Interventions should focus on increasing parental involvement in food parenting.

  12. PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers

    Science.gov (United States)

    Nato, Alejandro Q.; Chapman, Nicola H.; Sohi, Harkirat K.; Nguyen, Hiep D.; Brkanac, Zoran; Wijsman, Ellen M.

    2015-01-01

    Motivation: Huge genetic datasets with dense marker panels are now common. With the availability of sequence data and recognition of importance of rare variants, smaller studies based on pedigrees are again also common. Pedigree-based samples often start with a dense marker panel, a subset of which may be used for linkage analysis to reduce computational burden and to limit linkage disequilibrium between single-nucleotide polymorphisms (SNPs). Programs attempting to select markers for linkage panels exist but lack flexibility. Results: We developed a pedigree-based analysis pipeline (PBAP) suite of programs geared towards SNPs and sequence data. PBAP performs quality control, marker selection and file preparation. PBAP sets up files for MORGAN, which can handle analyses for small and large pedigrees, typically human, and results can be used with other programs and for downstream analyses. We evaluate and illustrate its features with two real datasets. Availability and implementation: PBAP scripts may be downloaded from http://faculty.washington.edu/wijsman/software.shtml. Contact: wijsman@uw.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26231429

  13. Language sampling

    DEFF Research Database (Denmark)

    Rijkhoff, Jan; Bakker, Dik

    1998-01-01

    This article has two aims: [1] to present a revised version of the sampling method that was originally proposed in 1993 by Rijkhoff, Bakker, Hengeveld and Kahrel, and [2] to discuss a number of other approaches to language sampling in the light of our own method. We will also demonstrate how our...... sampling method is used with different genetic classifications (Voegelin & Voegelin 1977, Ruhlen 1987, Grimes ed. 1997) and argue that —on the whole— our sampling technique compares favourably with other methods, especially in the case of exploratory research....

  14. Catálogo taxonómico-geográfico de los coleópteros de la familia Meloidae de México

    Directory of Open Access Journals (Sweden)

    García-París, M.

    2007-12-01

    Full Text Available A comprehensive taxonomic catalogue of the Mexican representatives of the family Meloidae is presented. The catalogue includes a revised synonymical list including type localities and published geographical records for all known species. The Mexican Fauna of Meloidae currently includes 255 extant species, plus one only known from the fossil record, arranged in 21 genera within the subfamilies Meloinae, Nemognathinae and Tetraonycinae. The last comprehensive catalogue published (Blackwelder, 1945 recorded the presence of 160 species of Meloidae in México, almost 100 species less than the current known number. However the current number of species seems to be far below the actual number, since many species widely distributed along the northern border, within the United States, are likely to be found also in Mexico. Regarding taxonomic and nomenclatural changes, in this catalogue we propose the use of the names Epicauta dugesi Werner, 1957 and Tegrodera erosa extincta Beauregard, 1890; we propose three new synonymies for Nemognatha chrysomeloides (Linnaeus, 1763 (N. atra Beauregard, 1890; N. pallidicollis Beauregard, 1890 and N. violacea Beauregard, 1890 and one for E. dugesi (Epicauta tamara Adams & Selander, 1979; we designate lectotype for Lytta koltzei var. minor Haag-Rutenberg, 1880 with the goal of resolving the taxonomic problem generated by the previous invalid designation of lectotype for L. k. var. cyanescens; and finally we consider Cissites maculata (Swederus, 1787 and Tetraonyx (Tetraonyx bimaculatus (Klug, 1825 as species to be possibly excluded from the Mexican checklist.

    Se presenta un catálogo taxonómico de los representantes mexicanos de la familia Meloidae que incluye un listado revisado de sinonimias, localidades típicas y registros geográficos publicados de cada una de las especies. La fauna mexicana incluye en la actualidad 255

  15. Leishmania mexicana: aspectos taxonómicos y rareza de la infección humana en Três Braços, Bahia, Brasil

    Directory of Open Access Journals (Sweden)

    César Augusto Cuba Cuba

    1984-09-01

    Full Text Available Del estúdio de 51 stocks de Leishmania aislados de pacientes humanos de leishmaniasis cutaneomucosa en Três Braços, Bahia, Brasil, los autores describen, en detalle, el análisis de los dos únicos stocks de L. mexicana, identificando uno de ellos como L. mexicana amazonensis. El otro aislado permanece en posición taxonómica no definida pues considerándosele como un miembro de L. mexicana, encuéntranse dificultades para su identificación subespecífica. Evaluan también los parâmetros biológicos e isoenzimáticos y discuten el papel de los anticuerpos monoclonales en la tipificación de éstos stocks. Los autores remarcan la rareza de la transmisión de parásitos del complejo L. mexicana en esta región, aun cuando estudien epidemiológicamente por mais de 8 anos la infección humana.In a study of 51 stocks of Leishmania isolated from patients with cutaneous leishmaniasis in Três Braços, Bahia, Brazil 49 were characterized as L. braziliensis braziliensis. Only two L. mexicana stocks were identified. One was subspeciated as L. mexicana amazonensis. The other differed from this species and to date remains unspeciated. The biological parameters, isoenzyme analysis and monoclonal antibody findings relating to these two strains are discussed. Transmission of parasites of the mexicana complex to man have been rare in this region during the 8 years of study of the human infection.

  16. Revisão taxonômica de Myrocarpus Allemão (Leguminosae, Papilionoideae, Sophoreae Taxonomic revision of Myrocarpus Allemão (Leguminosae, Papilionoideae, Sophoreae

    Directory of Open Access Journals (Sweden)

    Ângela L.B. Sartori

    2004-09-01

    Full Text Available Em Myrocarpus, gênero exclusivamente sul-americano, são reconhecidas cinco espécies: Myrocarpus frondosus Allemão, M. leprosus Pickel, M. venezuelensis Rudd, M. fastigiatus Allemãoe M. emarginatus A.L.B. Sartori & A.M.G. Azevedo. Na delimitação das espécies são discutidos dados de morfologia, hábitats e de distribuição geográfica. A morfologia das pétalas e a ornamentação da região seminífera são caracteres relevantes na identificação das espécies, embora não utilizados até o presente. Este estudo apresenta chave de identificação das espécies, descrições, ilustrações, mapa de distribuição e novos registros de ocorrência.In Myrocarpus, an exclusively South American genus, five species are recognised: Myrocarpus frondosus Allemão, M. leprosus Pickel, M. venezuelensis Rudd, M. fastigiatus Allemãoand M. emarginatus A.L.B. Sartori & A.M.G. Azevedo. Morphologic data, habitat information and geographic distribution of each taxon are discussed. Petal morphology and ornamentation of seed chamber are an important character for species identification, though not shown previously. Key to the species, descriptions, illustrations, distribution, and new registers are presented.

  17. Composición taxonómica, distribución y bionomía de la familia Noteridae (Coleoptera: Adephaga en Cuba

    Directory of Open Access Journals (Sweden)

    Yoandri S. MEGNA

    2006-01-01

    Full Text Available La presente investigación analiza la composición taxonómica, distribución y bionomía de los notéridos registrados en Cuba, y se brinda una clave para su identificación. El estudio se realizó sobre la base de datos bibliográficos a nivel regional y nacional, así como del material colectado en diferentes localidades del país. Este trabajo permitió definir la lista de especies, su distribución por distritos fitogeográficos y los aspectos más generales de su bionomía. Se determinó que la familia Noteridae está compuesta por cinco géneros (Hydrocanthus Say, Mesonoterus Sharp, Suphis Aubé, Suphisellus Crotch y Notomicrus Sharp y 10 especies, de las cuales Suphisellus tenuicornis (Chevrolat es endémica, e Hydrocanthus advena Sharp no está confirmada. Las especies registradas están distribuidas en 11 (28,2% de los 39 distritos fitogeográficos establecidos. El distrito de mayor riqueza de especies es el No 15 (Planicie Centro-Occidental, con ocho especies. La especie más ampliamente distribuida es Notomicrus sharpi J. Balfour-Browne, reportada para seis (15,4% distritos. Los datos bionómicos muestran que los notéridos tienen preferencia por los hábitats lénticos y permanentes, de aguas dulces y turbias, ubicados en zonas bajas y soleadas con abundante vegetación acuática.

  18. Estudo taxonômico de Sapotaceae Juss. do litoral Paraense The taxonomic study of the Sapotaceae Juss. on the coast of Pará

    Directory of Open Access Journals (Sweden)

    Deyvid Marques Valente

    2013-06-01

    Full Text Available Este trabalho consiste no tratamento taxonômico de Sapotaceae Juss. nas restingas do litoral paraense. Com auxilio de estereomicroscópio foram feitas as descrições morfológicas das partes vegetativas e reprodutivas. Utilizou-se literatura especializada, coleções identificadas por especialistas para confirmar as características diferenciais dos táxons e montada uma chave de identificação para as espécies. Foram descritas cinco espécies e quatro subespécies, distribuídas em quatro gêneros: Manilkara bidentata subsp. bidentata, M. bidentata subsp. surinamensis, M. triflora, M. paraensis; Micropholisvenulosa, M. gnaphaloclados; Pouteria ramiflora, P. reticulata subsp. reticulata and Pradosia schomburgkiana subsp. schomburgkiana. O gênero Manilkara Adans.foi o mais representativo com duas espécies e duas subespécies. A formação floresta de restinga foi o ecossistema que apresentou o maior número de táxons.This study deals with the taxonomic treatment of Sapotaceae Juss. on the coastal sandbanks of Pará State. With the aid of a stereomicroscopy, there were made morphological descriptions of reproductive and vegetative parts. We used literature and collections identified by specialists to confirm the different characteristics of the taxa. We also constructed an identification key for species. We described five species and four subspecies, distributed into four genera: Manilkara bidentata subsp. bidentata, M. bidentata subsp. surinamensis, M. triflora, M. paraensis; Micropholisvenulosa, M. gnaphaloclados; Pouteria ramiflora, P. reticulata subsp. reticulata and Pradosia schomburgkiana subsp. schomburgkiana. The genus Manilkara Adans. was the most representative with two species and two subspecies. The sandbank forest formation was the ecosystem with the largest number of taxa.

  19. Fusarium foetens, a new species pathogenic to begonia elatior hybrids (Begonia x hiemalis) and the sister taxon of the Fusarium oxysporum species complex.

    Science.gov (United States)

    Schroers, H-J; Baayen, R P; Meffert, J P; de Gruyter, J; Hooftman, M; O'Donnell, K

    2004-01-01

    A new disease recently was discovered in begonia elatior hybrid (Begonia × hiemalis) nurseries in The Netherlands. Diseased plants showed a combination of basal rot, vein yellowing and wilting and the base of collapsing plants was covered by unusually large masses of Fusarium macroconidia. A species of Fusarium was isolated consistently from the discolored veins of leaves and stems. It differed morphologically from F. begoniae, a known agent of begonia flower, leaf and stem blight. The Fusarium species resembled members of the F. oxysporum species complex in producing short monophialides on the aerial mycelium and abundant chlamydospores. Other phenotypic characters such as polyphialides formed occasionally in at least some strains, relatively long monophialides intermingled with the short monophialides formed on the aerial mycelium, distinct sporodochial conidiomata, and distinct pungent colony odor distinguished it from the F. oxysporum species complex. Phylogenetic analyses of partial sequences of the mitochondrial small subunit of the ribosomal DNA (mtSSU rDNA), nuclear translation elongation factor 1α (EF-1α) and β-tubulin gene exons and introns indicate that the Fusarium species represents a sister group of the F. oxysporum species complex. Begonia × hiemalis cultivars Bazan, Bellona and Netja Dark proved to be highly susceptible to the new species. Inoculated plants developed tracheomycosis within 4 wk, and most died within 8 wk. The new taxon was not pathogenic to Euphorbia pulcherrima, Impatiens walleriana and Saintpaulia ionantha that commonly are grown in nurseries along with B. × hiemalis. Inoculated plants of Cyclamen persicum did not develop the disease but had discolored vessels from which the inoculated fungus was isolated. Given that the newly discovered begonia pathogen is distinct in pathogenicity, morphology and phylogeny from other fusaria, it is described here as a new species, Fusarium foetens.

  20. Description of a new catfish genus (Siluriformes, Loricariidae) from the Tocantins River basin in central Brazil, with comments on the historical zoogeography of the new taxon

    Science.gov (United States)

    Silva, Gabriel S. C.; Roxo, Fábio F.; Ochoa, Luz E.; Oliveira, Claudio

    2016-01-01

    Abstract This study presents the description of a new genus of the catfish subfamily Neoplecostominae from the Tocantins River basin. It can be distinguished from other neoplecostomine genera by the presence of (1) three hypertrophied bicuspid odontodes on the lateral portion of the body (character apparently present in mature males); (2) a large area without odontodes around the snout; (3) a post-dorsal ridge on the caudal peduncle; (4) a straight tooth series in the dentary and premaxillary rows; (5) the absence of abdominal plates; (6) a conspicuous series of enlarged papillae just posterior to the dentary teeth; and (7) caudal peduncle ellipsoid in cross section. We used maximum likelihood and Bayesian methods to estimate a time-calibrated tree with the published data on 116 loricariid species using one nuclear and three mitochondrial genes, and we used parametric biogeographic analyses (DEC and DECj models) to estimate ancestral geographic ranges and to infer the colonization routes of the new genus and the other neoplecostomines in the Tocantins River and the hydrographic systems of southeastern Brazil. Our phylogenetic results indicate that the new genus and species is a sister taxon of all the other members of the Neoplecostominae, originating during the Eocene at 47.5 Mya (32.7–64.5 Mya 95% HPD). The present distribution of the new genus and other neoplecostomines may be the result of a historical connection between the drainage basins of the Paraguay and Paraná rivers and the Amazon basin, mainly through headwater captures. PMID:27408594

  1. Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound

    Science.gov (United States)

    Harvey, J.B.J.; Hoy, M.S.; Rodriguez, R.J.

    2009-01-01

    Non-native marine species have been and continue to be introduced into Puget Sound via several vectors including ship's ballast water. Some non-native species become invasive and negatively impact native species or near shore habitats. We present a new methodology for the development and testing of taxon specific PCR primers designed to assess environmental samples of ocean water for the presence of native and non-native bivalves, crustaceans and algae. The intergenic spacer regions (IGS; ITS1, ITS2 and 5.8S) of the ribosomal DNA were sequenced for adult samples of each taxon studied. We used these data along with those available in Genbank to design taxon and group specific primers and tested their stringency against artificial populations of plasmid constructs containing the entire IGS region for each of the 25 taxa in our study, respectively. Taxon and group specific primer sets were then used to detect the presence or absence of native and non-native planktonic life-history stages (propagules) from environmental samples of ballast water and plankton tow net samples collected in Puget Sound. This methodology provides an inexpensive and efficient way to test the discriminatory ability of taxon specific oligonucleotides (PCR primers) before creating molecular probes or beacons for use in molecular ecological applications such as probe hybridizations or microarray analyses. This work addresses the current need to develop molecular tools capable of diagnosing the presence of planktonic life-history stages from non-native marine species (potential invaders) in ballast water and other environmental samples. ?? 2008 Elsevier B.V.

  2. Direct observation of dynamic shear jamming in dense suspensions

    Science.gov (United States)

    Peters, Ivo R.; Majumdar, Sayantan; Jaeger, Heinrich M.

    2016-04-01

    Liquid-like at rest, dense suspensions of hard particles can undergo striking transformations in behaviour when agitated or sheared. These phenomena include solidification during rapid impact, as well as strong shear thickening characterized by discontinuous, orders-of-magnitude increases in suspension viscosity. Much of this highly non-Newtonian behaviour has recently been interpreted within the framework of a jamming transition. However, although jamming indeed induces solid-like rigidity, even a strongly shear-thickened state still flows and thus cannot be fully jammed. Furthermore, although suspensions are incompressible, the onset of rigidity in the standard jamming scenario requires an increase in particle density. Finally, whereas shear thickening occurs in the steady state, impact-induced solidification is transient. As a result, it has remained unclear how these dense suspension phenomena are related and how they are connected to jamming. Here we resolve this by systematically exploring both the steady-state and transient regimes with the same experimental system. We demonstrate that a fully jammed, solid-like state can be reached without compression and instead purely with shear, as recently proposed for dry granular systems. This state is created by transient shear-jamming fronts, which we track directly. We also show that shear stress, rather than shear rate, is the key control parameter. From these findings we map out a state diagram with particle density and shear stress as variables. We identify discontinuous shear thickening with a marginally jammed regime just below the onset of full, solid-like jamming. This state diagram provides a unifying framework, compatible with prior experimental and simulation results on dense suspensions, that connects steady-state and transient behaviour in terms of a dynamic shear-jamming process.

  3. Dense Gas in the Outer Spiral Arm of M51

    Science.gov (United States)

    Chen, Hao; Braine, Jonathan; Gao, Yu; Koda, Jin; Gu, Qiusheng

    2017-02-01

    There is a linear relation between the mass of dense gas traced by the HCN(1–0) luminosity and the star formation rate (SFR) traced by the far-infrared luminosity. Recent observations of galactic disks have shown some systematic variations. In order to explore the SFR–dense gas link at high resolution (∼4″, ∼150 pc) in the outer disk of an external galaxy, we have mapped a region about 5 kpc from the center along the northern spiral arm of M51 in the HCN(1–0), HCO+(1–0), and HNC(1–0) emission lines using the Northern Extended Millimeter Array interferometer. The HCN and HCO+ lines were detected in six giant molecular associations (GMAs), while HNC emission was only detected in the two brightest GMAs. One of the GMAs hosts a powerful H ii region, and HCN is stronger than HCO+ there. Comparing observations of GMAs in the disks of M31 and M33 at similar angular resolution (∼100 pc), we find that GMAs in the outer disk of M51 are brighter in both the HCN and the HCO+ lines by a factor of 3, on average. However, the {I}{HCN}/{I}{CO} and {I}{{HCO}+}/{I}{CO} ratios are similar to the ratios in nearby galactic disks and the Galactic plane. Using the Herschel 70 μm data to trace the total IR luminosity at the resolution of the GMAs, we find that both the {L}{IR}–{L}{HCN} and {L}{IR}–{L}{{HCO}+} relations in the outer disk GMAs are consistent with the proportionality between the {L}{IR} and the dense gas mass established globally in galaxies within the scatter. The IR/HCN and IR/HCO+ ratios of the GMAs vary by a factor of 3, probably depending on whether massive stars are forming.

  4. Inhomogeneous quasistationary state of dense fluids of inelastic hard spheres.

    Science.gov (United States)

    Fouxon, Itzhak

    2014-05-01

    We study closed dense collections of freely cooling hard spheres that collide inelastically with constant coefficient of normal restitution. We find inhomogeneous states (ISs) where the density profile is spatially nonuniform but constant in time. The states are exact solutions of nonlinear partial differential equations that describe the coupled distributions of density and temperature valid when inelastic losses of energy per collision are small. The derivation is performed without modeling the equations' coefficients that are unknown in the dense limit (such as the equation of state) using only their scaling form specific for hard spheres. Thus the IS is the exact state of this dense many-body system. It captures a fundamental property of inelastic collections of particles: the possibility of preserving nonuniform temperature via the interplay of inelastic cooling and heat conduction that generalizes previous results. We perform numerical simulations to demonstrate that arbitrary initial state evolves to the IS in the limit of long times where the container has the geometry of the channel. The evolution is like a gas-liquid transition. The liquid condenses in a vanishing part of the total volume but takes most of the mass of the system. However, the gaseous phase, which mass grows only logarithmically with the system size, is relevant because its fast particles carry most of the energy of the system. Remarkably, the system self-organizes to dissipate no energy: The inelastic decay of energy is a power law [1+t/t(c)](-2), where t(c) diverges in the thermodynamic limit. This is reinforced by observing that for supercritical systems the IS coincide in most of the space with the steady states of granular systems heated at one of the walls. We discuss the relation of our results to the recently proposed finite-time singularity in other container's geometries.

  5. Crystal structures and dynamical properties of dense CO2.

    Science.gov (United States)

    Yong, Xue; Liu, Hanyu; Wu, Min; Yao, Yansun; Tse, John S; Dias, Ranga; Yoo, Choong-Shik

    2016-10-04

    Structural polymorphism in dense carbon dioxide (CO2) has attracted significant attention in high-pressure physics and chemistry for the past two decades. Here, we have performed high-pressure experiments and first-principles theoretical calculations to investigate the stability, structure, and dynamical properties of dense CO2 We found evidence that CO2-V with the 4-coordinated extended structure can be quenched to ambient pressure below 200 K-the melting temperature of CO2-I. CO2-V is a fully coordinated structure formed from a molecular solid at high pressure and recovered at ambient pressure. Apart from confirming the metastability of CO2-V (I-42d) at ambient pressure at low temperature, results of ab initio molecular dynamics and metadynamics (MD) simulations provided insights into the transformation processes and structural relationship from the molecular to the extended phases. In addition, the simulation also predicted a phase V'(Pna21) in the stability region of CO2-V with a diffraction pattern similar to that previously assigned to the CO2-V (P212121) structure. Both CO2-V and -V' are predicted to be recoverable and hard with a Vicker hardness of ∼20 GPa. Significantly, MD simulations found that the CO2 in phase IV exhibits large-amplitude bending motions at finite temperatures and high pressures. This finding helps to explain the discrepancy between earlier predicted static structures and experiments. MD simulations clearly indicate temperature effects are critical to understanding the high-pressure behaviors of dense CO2 structures-highlighting the significance of chemical kinetics associated with the transformations.

  6. Parallel Access of Out-Of-Core Dense Extendible Arrays

    Energy Technology Data Exchange (ETDEWEB)

    Otoo, Ekow J; Rotem, Doron

    2007-07-26

    Datasets used in scientific and engineering applications are often modeled as dense multi-dimensional arrays. For very large datasets, the corresponding array models are typically stored out-of-core as array files. The array elements are mapped onto linear consecutive locations that correspond to the linear ordering of the multi-dimensional indices. Two conventional mappings used are the row-major order and the column-major order of multi-dimensional arrays. Such conventional mappings of dense array files highly limit the performance of applications and the extendibility of the dataset. Firstly, an array file that is organized in say row-major order causes applications that subsequently access the data in column-major order, to have abysmal performance. Secondly, any subsequent expansion of the array file is limited to only one dimension. Expansions of such out-of-core conventional arrays along arbitrary dimensions, require storage reorganization that can be very expensive. Wepresent a solution for storing out-of-core dense extendible arrays that resolve the two limitations. The method uses a mapping function F*(), together with information maintained in axial vectors, to compute the linear address of an extendible array element when passed its k-dimensional index. We also give the inverse function, F-1*() for deriving the k-dimensional index when given the linear address. We show how the mapping function, in combination with MPI-IO and a parallel file system, allows for the growth of the extendible array without reorganization and no significant performance degradation of applications accessing elements in any desired order. We give methods for reading and writing sub-arrays into and out of parallel applications that run on a cluster of workstations. The axial-vectors are replicated and maintained in each node that accesses sub-array elements.

  7. Structural relaxation in dense liquids composed of anisotropic particles.

    Science.gov (United States)

    Shen, Tianqi; Schreck, Carl; Chakraborty, Bulbul; Freed, Denise E; O'Hern, Corey S

    2012-10-01

    We perform extensive molecular dynamics simulations of dense liquids composed of bidisperse dimer- and ellipse-shaped particles in two dimensions that interact via purely repulsive contact forces. We measure the structural relaxation times obtained from the long-time α decay of the self part of the intermediate scattering function for the translational and rotational degrees of freedom (DOF) as a function of packing fraction φ, temperature T, and aspect ratio α. We are able to collapse the packing-fraction and temperature-dependent structural relaxation times for disks, and dimers and ellipses over a wide range of α, onto a universal scaling function F(±)(|φ-φ(0)|,T,α), which is similar to that employed in previous studies of dense liquids composed of purely repulsive spherical particles in three dimensions. F(±) for both the translational and rotational DOF are characterized by the α-dependent scaling exponents μ and δ and packing fraction φ(0)(α) that signals the crossover in the scaling form F(±) from hard-particle dynamics to super-Arrhenius behavior for each aspect ratio. We find that the fragility of structural relaxation at φ(0), m(φ(0)), decreases monotonically with increasing aspect ratio for both ellipses and dimers. For α>α(p), where α(p) is the location of the peak in the packing fraction φ(J) at jamming onset, the rotational DOF are strongly coupled to the translational DOF, and the dynamic scaling exponents and φ(0) are similar for the rotational and translational DOF. For 1composed of dimer- and ellipse-shaped particles are qualitatively the same, despite the fact that zero-temperature static packings of dimers are isostatic, while static packings of ellipses are hypostatic. Thus, zero-temperature contact counting arguments do not apply to structural relaxation of dense liquids of anisotropic particles near the glass transition.

  8. Sampling Development

    Science.gov (United States)

    Adolph, Karen E.; Robinson, Scott R.

    2011-01-01

    Research in developmental psychology requires sampling at different time points. Accurate depictions of developmental change provide a foundation for further empirical studies and theories about developmental mechanisms. However, overreliance on widely spaced sampling intervals in cross-sectional and longitudinal designs threatens the validity of…

  9. INFERNO - A better model of atoms in dense plasmas

    Science.gov (United States)

    Liberman, D. A.

    1982-03-01

    A self-consistent field model of atoms in dense plasmas has been devised and incorporated in a computer program. In the model there is a uniform positive charge distribution with a hole in it and at the center of the hole an atomic nucleus. There are electrons, in both bound and continuum states, in sufficient number to form an electrically neutral system. The Dirac equation is used so that high Z atoms can be dealt with. A finite temperature is assumed, and a mean field (average atom) approximation is used in statistical averages. Applications have been made to equations of states and to photoabsorption.

  10. Modeling the jet quenching in hot and dense QCD matter

    CERN Document Server

    Lokhtin, I P; Petrushanko, S V; Snigirev, A M; Arsene, I; Tywoniuk, K

    2009-01-01

    One of the important perturbative ("hard") probes of hot and dense QCD matter is the medium-induced energy loss of energetic partons, so called "jet quenching", which is predicted to be very different in cold nuclear matter and in QGP, and leads to a number of phenomena which are already seen in the RHIC data on the qualitative level. The inclusion of jet quenching and other important collective effects, such as radial and elliptic flows, in the existing Monte-Carlo models of relativistic heavy ion collisions is discussed. Some issues on the corresponding physical observables at RHIC and LHC energies obtained with HYDJET++ model are presented.

  11. Exp6-polar thermodynamics of dense supercritical water

    Energy Technology Data Exchange (ETDEWEB)

    Bastea, S; Fried, L E

    2007-12-13

    We introduce a simple polar fluid model for the thermodynamics of dense supercritical water based on a Buckingham (exp-6) core and point dipole representation of the water molecule. The proposed exp6-polar thermodynamics, based on ideas originally applied to dipolar hard spheres, performs very well when tested against molecular dynamics simulations. Comparisons of the model predictions with experimental data available for supercritical water yield excellent agreement for the shock Hugoniot, isotherms and sound speeds, and are also quite good for the self-diffusion constant and relative dielectric constant. We expect the present approach to be also useful for other small polar molecules and their mixtures.

  12. Parton energy loss in hot and dense QCD medium

    Institute of Scientific and Technical Information of China (English)

    LIU Jie; MAO Yaxian; XIANG Wenchang; ZHOU Daicui

    2006-01-01

    Induced gluon radiation and energy loss of heavy quark in hot and dense QCD media are discussed. Using the light-cone path integral approach, an analytical formula of the energy loss of heavy quark is derived. The results show that the quark energy loss obviously depends on the mass of quark, i. e. a remarkable suppression occurs in the case of heavy quark comparing to a light one. The radiative energy loss of energetic quark is proportional to L2, where L is the length of the medium. The dependence of energy loss on L2 turns to L with decreasing quark energy.

  13. Chemical potential calculations in dense liquids using metadynamics

    Science.gov (United States)

    Perego, C.; Giberti, F.; Parrinello, M.

    2016-10-01

    The calculation of chemical potential has traditionally been a challenge in atomistic simulations. One of the most used approaches is Widom's insertion method in which the chemical potential is calculated by periodically attempting to insert an extra particle in the system. In dense systems this method fails since the insertion probability is very low. In this paper we show that in a homogeneous fluid the insertion probability can be increased using metadynamics. We test our method on a supercooled high density binary Lennard-Jones fluid. We find that we can obtain efficiently converged results even when Widom's method fails.

  14. Chemical Potential Calculations In Dense Liquids Using Metadynamics

    CERN Document Server

    Perego, Claudio; Parrinello, Michele

    2016-01-01

    The calculation of chemical potential has traditionally been a challenge in atomistic simulations. One of the most used approaches is Widom's insertion method in which the chemical potential is calculated by periodically attempting to insert an extra particle in the system. In dense systems this method fails since the insertion probability is very low. In this paper we show that in a homogeneous fluid the insertion probability can be increased using metadynamics. We test our method on a supercooled high density binary Lennard-Jones fluid. We find that we can obtain efficiently converged results even when Widom's method fails.

  15. Warm, Dense Plasma Characterization by X-ray Thomson Scattering

    Energy Technology Data Exchange (ETDEWEB)

    Landen, O L; Glenzer, S H; Cauble, R C; Lee, R W; Edwards, J E; Degroot, J S

    2000-07-18

    We describe how the powerful technique of spectrally resolved Thomson scattering can be extended to the x-ray regime, for direct measurements of the ionization state, density, temperature, and the microscopic behavior of dense cool plasmas. Such a direct measurement of microscopic parameters of solid density plasmas could eventually be used to properly interpret laboratory measurements of material properties such as thermal and electrical conductivity, EUS and opacity. In addition, x-ray Thomson scattering will provide new information on the characteristics of rarely and hitherto difficult to diagnose Fermi degenerate and strongly coupled plasmas.

  16. Theory of the equation of state of hot dense matter

    Energy Technology Data Exchange (ETDEWEB)

    Barbee, T W; Surh, M; Yang, L H

    1999-07-23

    Ab initio molecular dynamics calculations are adapted to treat dense plasmas for temperatures exceeding the electronic Fermi temperature. Extended electronic states are obtained in a plane wave basis by using pseudopotentials for the ion cores in the local density approximation to density functional theory. The method reduces to conventional first principles molecular dynamics at low temperatures with the expected high level of accuracy. The occurrence of thermally excited ion cores at high temperatures is treated by means of final state pseudopotentials. The method is applied to the shock compression Hugoniot equation of state for aluminum. Good agreement with experiment is found for temperatures ranging from zero through 105K.

  17. Electronic Structure of Dense Plasmas by X-Ray Scattering

    Energy Technology Data Exchange (ETDEWEB)

    Gregori, G; Glenzer, S H; Rogers, F J; Pollaine, S M; Froula, D H; Blancard, C; Faussurier, G; Renaudin, P; Kuhlbrodt, S; Redmer, R; Landen, O L

    2003-10-07

    We present an improved analytical expression for the x-ray dynamic structure factor from a dense plasma which includes the effects of weakly bound electrons. This result can be applied to describe scattering from low to moderate Z plasmas, and it covers the entire range of plasma conditions that can be found in inertial confinement fusion experiments, from ideal to degenerate up to moderately coupled systems. We use our theory to interpret x-ray scattering experiments from solid density carbon plasma and to extract accurate measurements of electron temperature, electron density and charge state. We use our experimental results to validate various equation-of-state models for carbon plasmas.

  18. Neutron Star Dense Matter Equation of State Constraints with NICER

    Science.gov (United States)

    Bogdanov, Slavko; Arzoumanian, Zaven; Chakrabarty, Deepto; Guillot, Sebastien; Kust Harding, Alice; Ho, Wynn C. G.; Lamb, Frederick K.; Mahmoodifar, Simin; Miller, M. Coleman; Morsink, Sharon; Ozel, Feryal; Psaltis, Dimitrios; Ray, Paul S.; Riley, Tom; Strohmayer, Tod E.; Watts, Anna; Wolff, Michael Thomas; Gendreau, Keith

    2017-08-01

    One of the principal goals of the Neutron Star Interior Composition Explorer (NICER) is to place constraints on the dense matter equation of state through sensitive X-ray observations of neutron stars. The NICER mission will focus on measuring the masses and radii of several relatively bright, thermally-emitting, rotation-powered millisecond pulsars, by fitting models that incorporate all relevant relativistic effects and atmospheric radiation transfer processes to their periodic soft X-ray modulations. Here, we provide an overview of the targets NICER will observe and tthe technique and models that have been developed by the NICER team to estimate the masses and radii of these pulsars.

  19. Interaction of fast magnetoacoustic solitons in dense plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Jahangir, R.; Saleem, Khalid [National Centre for Physics (NCP) Shahdra Valley Road, Islamabad (Pakistan); Quaid-i-Azam University, Islamabad (Pakistan); Masood, W. [National Centre for Physics (NCP) Shahdra Valley Road, Islamabad (Pakistan); COMSATS Institute of Information Technology, Pak Road, Chak Shahzad, Islamabad (Pakistan); Siddiq, M.; Batool, Nazia [National Centre for Physics (NCP) Shahdra Valley Road, Islamabad (Pakistan)

    2015-09-15

    One dimensional propagation of fast magnetoacoustic solitary waves in dense plasmas with degenerate electrons is investigated in this paper in the small amplitude limit. In this regard, Korteweg deVries equation is derived and discussed using the plasma parameters that are typically found in white dwarf stars. The interaction of fast magnetoacoustic solitons is explored by using the Hirota bilinear formalism, which admits multi soliton solutions. It is observed that the values of the propagation vectors determine the interaction of solitary waves. It is further noted that the amplitude of the respective solitary waves remain unchanged after the interaction; however, they do experience a phase shift.

  20. MATHEMATICAL MODELS AND NUMERICAL SIMULATION FOR DENSE PARTICULATE FLOWS

    Institute of Scientific and Technical Information of China (English)

    WU Chun-liang

    2004-01-01

    Sedimentation of particles in inclined and vertical vessels is numerically simulated by the Eulerian two-fluid model. The numerical results show an interesting phenomenon with two circulation vortexes in a vertical vessel but one in the inclined vessel. Sensitivity tests indicate that the boundary layer effect is the key to induce this phenomenon. A numerical method based on 2D unstructured meshes is presented to solve the hard-sphere discrete particle model. Several applications show the numerical method has a good performance to simulate dense particulate flows in irregular domains without regard to element types of the mesh.