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Sample records for denelcor hep multiprocessor

  1. Parallel linear algebra library for the Denelcor HEP

    Energy Technology Data Exchange (ETDEWEB)

    Dongarra, J.J.; Sorensen, D.C.

    1984-10-01

    This paper discusses the implementation of a library of algorithms for problems in linear algebra on the Denelcor HEP. The package includes some of the most heavily used subroutines from LINPACK, that is, solution of linear systems based on LU, Cholesky, and QR factorizations as well as the appropriate triangular solvers. The concept followed is to code these routines in terms of high-level modules, which provides a vehicle to achieve both transportability and efficiency across a wide range of architectures. We discuss this concept in the context of a numerical linear algebra software library which is adaptable to highly parallel computing systems. However, the concept is expected to applicable to other libraries as well.

  2. NASTRAN of the HEP

    Science.gov (United States)

    Brown, W. K.

    1982-01-01

    Preliminary plans for the conversion of NASTRAN to DENELCOR's heterogeneous element processor (HEP) are presented. First, a brief history of computer architecture and the architecture of the HEP computer system are discussed. Second, a description of the HEP computer system is provided. Lastly, the preliminary NASTRAN conversion plans for link management, I/O management, memory management, and code optimization are discussed.

  3. HEP - A semaphore-synchronized multiprocessor with central control. [Heterogeneous Element Processor

    Science.gov (United States)

    Gilliland, M. C.; Smith, B. J.; Calvert, W.

    1976-01-01

    The paper describes the design concept of the Heterogeneous Element Processor (HEP), a system tailored to the special needs of scientific simulation. In order to achieve high-speed computation required by simulation, HEP features a hierarchy of processes executing in parallel on a number of processors, with synchronization being largely accomplished by hardware. A full-empty-reserve scheme of synchronization is realized by zero-one-valued hardware semaphores. A typical system has, besides the control computer and the scheduler, an algebraic module, a memory module, a first-in first-out (FIFO) module, an integrator module, and an I/O module. The architecture of the scheduler and the algebraic module is examined in detail.

  4. Multiprocessor programming environment

    Energy Technology Data Exchange (ETDEWEB)

    Smith, M.B.; Fornaro, R.

    1988-12-01

    Programming tools and techniques have been well developed for traditional uniprocessor computer systems. The focus of this research project is on the development of a programming environment for a high speed real time heterogeneous multiprocessor system, with special emphasis on languages and compilers. The new tools and techniques will allow a smooth transition for programmers with experience only on single processor systems.

  5. The art of multiprocessor programming

    CERN Document Server

    Herlihy, Maurice

    2012-01-01

    Revised and updated with improvements conceived in parallel programming courses, The Art of Multiprocessor Programming is an authoritative guide to multicore programming. It introduces a higher level set of software development skills than that needed for efficient single-core programming. This book provides comprehensive coverage of the new principles, algorithms, and tools necessary for effective multiprocessor programming. Students and professionals alike will benefit from thorough coverage of key multiprocessor programming issues. This revised edition incorporates much-demanded updates t

  6. Embedded multiprocessors scheduling and synchronization

    CERN Document Server

    Sriram, Sundararajan

    2009-01-01

    Techniques for Optimizing Multiprocessor Implementations of Signal Processing ApplicationsAn indispensable component of the information age, signal processing is embedded in a variety of consumer devices, including cell phones and digital television, as well as in communication infrastructure, such as media servers and cellular base stations. Multiple programmable processors, along with custom hardware running in parallel, are needed to achieve the computation throughput required of such applications. Reviews important research in key areas related to the multiprocessor implementation of multi

  7. Multiprocessor scheduling with rejection

    Energy Technology Data Exchange (ETDEWEB)

    Bartal, Y. [Tel-Aviv Univ. (Israel); Leonardi, S.; Marchetti-Spaccamela, A. [Universita di Roma (Italy); Sgall, J. [Mathematical Inst., Zitna (Czechoslovakia)] [and others

    1996-12-31

    We consider a version of multiprocessor scheduling with the special feature that jobs may be rejected for a certain penalty. An instance of the problem is given by m identical parallel machines and a set of n jobs, each job characterized by a processing time and a penalty. In the on-line version the jobs arrive one by one and we have to schedule or reject a job before we have any information about future jobs. The objective is to minimize the makespan of the schedule for accepted jobs plus the sum of the penalties of rejected jobs. The main result is a 1 + {phi} {approx} 2.618 competitive algorithm for the on-line version of the problem, where 0 is the golden ratio. A matching lower bound shows that this is the best possible algorithm working for all m. For fixed m we give improved bounds, in particular for m = 2 we give an optimal {phi} {approx} 1.618 competitive algorithm. For the off-line problem we present a fully polynomial approximation scheme for fixed m and an approximation algorithm which runs in time O(n log n) for arbitrary m and guarantees 2 - 1/m approximation ratio.

  8. Shared performance monitor in a multiprocessor system

    Science.gov (United States)

    Chiu, George; Gara, Alan G; Salapura, Valentina

    2014-12-02

    A performance monitoring unit (PMU) and method for monitoring performance of events occurring in a multiprocessor system. The multiprocessor system comprises a plurality of processor devices units, each processor device for generating signals representing occurrences of events in the processor device, and, a single shared counter resource for performance monitoring. The performance monitor unit is shared by all processor cores in the multiprocessor system. The PMU is further programmed to monitor event signals issued from non-processor devices.

  9. A Multiprocessor Operating System Simulator

    Science.gov (United States)

    Johnston, Gary M.; Campbell, Roy H.

    1988-01-01

    This paper describes a multiprocessor operating system simulator that was developed by the authors in the Fall semester of 1987. The simulator was built in response to the need to provide students with an environment in which to build and test operating system concepts as part of the coursework of a third-year undergraduate operating systems course. Written in C++, the simulator uses the co-routine style task package that is distributed with the AT&T C++ Translator to provide a hierarchy of classes that represents a broad range of operating system software and hardware components. The class hierarchy closely follows that of the 'Choices' family of operating systems for loosely- and tightly-coupled multiprocessors. During an operating system course, these classes are refined and specialized by students in homework assignments to facilitate experimentation with different aspects of operating system design and policy decisions. The current implementation runs on the IBM RT PC under 4.3bsd UNIX.

  10. BEE COLONIES APPLIED TO MULTIPROCESSOR SCHEDULING

    OpenAIRE

    Butt, Nouman

    2009-01-01

    In order to achieve the high performance, we need to have an efficient scheduling of a parallelprogram onto the processors in multiprocessor systems that minimizes the entire executiontime. This problem of multiprocessor scheduling can be stated as finding a schedule for ageneral task graph to be executed on a multiprocessor system so that the schedule length can be minimize [10]. This scheduling problem is known to be NP- Hard.In multi processor task scheduling, we have a number of CPU’s on ...

  11. ATAMM enhancement and multiprocessor performance evaluation

    Science.gov (United States)

    Stoughton, John W.; Mielke, Roland R.; Som, Sukhamoy; Obando, Rodrigo; Malekpour, Mahyar R.; Jones, Robert L., III; Mandala, Brij Mohan V.

    1991-01-01

    ATAMM (Algorithm To Architecture Mapping Model) enhancement and multiprocessor performance evaluation is discussed. The following topics are included: the ATAMM model; ATAMM enhancement; ADM (Advanced Development Model) implementation of ATAMM; and ATAMM support tools.

  12. The structural robustness of multiprocessor computing system

    Directory of Open Access Journals (Sweden)

    N. Andronaty

    1996-03-01

    Full Text Available The model of the multiprocessor computing system on the base of transputers which permits to resolve the question of valuation of a structural robustness (viability, survivability is described.

  13. Multiprocessor scheduling for real-time systems

    CERN Document Server

    Baruah, Sanjoy; Buttazzo, Giorgio

    2015-01-01

    This book provides a comprehensive overview of both theoretical and pragmatic aspects of resource-allocation and scheduling in multiprocessor and multicore hard-real-time systems.  The authors derive new, abstract models of real-time tasks that capture accurately the salient features of real application systems that are to be implemented on multiprocessor platforms, and identify rules for mapping application systems onto the most appropriate models.  New run-time multiprocessor scheduling algorithms are presented, which are demonstrably better than those currently used, both in terms of run-time efficiency and tractability of off-line analysis.  Readers will benefit from a new design and analysis framework for multiprocessor real-time systems, which will translate into a significantly enhanced ability to provide formally verified, safety-critical real-time systems at a significantly lower cost.

  14. Buffered banks in multiprocessor systems

    Energy Technology Data Exchange (ETDEWEB)

    Robbins, K.A.; Robbins, S. [Univ. of Texas, San Antonio, TX (United States)

    1995-04-01

    A memory design based on logical banks is analyzed for shared memory multiprocessor systems. In this design, each physical bank is replaced by a logical bank consisting of a fast register and subbanks of slower memory. The subbanks are buffered by input and output queues which substantially reduce the effective cycle time when the reference rate is below saturation. The principal contribution of this work is the development of a simple analytical model which leads to scaling relationships among the efficiency, the bank cycle time, the number of processors, the size of the buffers, and the granularity of the banks. These scaling relationships imply that if the interconnection network has sufficient bandwidth to support efficient access using high-speed memory, then lower-speed memory can be substituted with little additional interconnection cost. The scaling relationships are shown to hold for a full datapath vector simulation based on the Cray Y-MP architecture. The model is used to develop design criteria for a system which supports 192 independent reference streams, and the performance of this system is evaluated by simulation over a range of loading conditions. 22 refs.

  15. Energy-aware scheduling on multiprocessor platforms

    CERN Document Server

    Li, Dawei

    2014-01-01

    Multiprocessor platforms play important roles in modern computing systems, and appear in various applications, ranging from energy-limited hand-held devices to large data centers. As the performance requirements increase, energy-consumption in these systems also increases signi cantly. Dynamic Voltage and Frequency Scaling (DVFS), which allows processors to dynamically adjust the supply voltage and the clock frequency to operate on di erent power/energy levels, is considered an e ective way to achieve the goal of energy-saving. This book surveys existing works that have been on energy-aware task scheduling on DVFS multiprocessor platforms. Energy-aware scheduling problems are intrinsically optimization problems, the formulations of which greatly depend on the platform and task models under consideration. Thus, Energy-aware Scheduling on Multiprocessor Platforms covers current research on this topic and classi es existing works according to two key standards, namely, homogeneity/heterogeneity of multi processo...

  16. Compiler-directed cache management in multiprocessors

    Science.gov (United States)

    Cheong, Hoichi; Veidenbaum, Alexander V.

    1990-01-01

    The necessity of finding alternatives to hardware-based cache coherence strategies for large-scale multiprocessor systems is discussed. Three different software-based strategies sharing the same goals and general approach are presented. They consist of a simple invalidation approach, a fast selective invalidation scheme, and a version control scheme. The strategies are suitable for shared-memory multiprocessor systems with interconnection networks and a large number of processors. Results of trace-driven simulations conducted on numerical benchmark routines to compare the performance of the three schemes are presented.

  17. Realtime multiprocessor for mobile ad hoc networks

    Directory of Open Access Journals (Sweden)

    T. Jungeblut

    2008-05-01

    Full Text Available This paper introduces a real-time Multiprocessor System-On-Chip (MPSoC for low power wireless applications. The multiprocessor is based on eight 32bit RISC processors that are connected via an Network-On-Chip (NoC. The NoC follows a novel approach with guaranteed bandwidth to the application that meets hard realtime requirements. At a clock frequency of 100 MHz the total power consumption of the MPSoC that has been fabricated in 180 nm UMC standard cell technology is 772 mW.

  18. One-Step Programmable Arbiters for Multiprocessors

    DEFF Research Database (Denmark)

    Højberg, Kristian Søe

    1978-01-01

    When processors in a multiprocessor system demand service from a shared bus in an asynchronous mode, a synchronous state arbiter resolves conflicts and allocates resources. Independent of the combination of requests, only one state transition is required from a free to allocated resource...

  19. Scheduling with communication for multiprocessor computation

    NARCIS (Netherlands)

    Verriet, J.H.

    1998-01-01

    Multiprocessor scheduling houdt zich bezig met de planning van de uitvoering van computer-programma s op een parallelle computer. Een computerprogramma kan worden gezien als een collectie instructies die gegroepeerd zijn in taken. Een parallelle computer is een computer met meerdere processoren

  20. Simulation Analysis of Data Sharing in Shared Memory Multiprocessors

    Science.gov (United States)

    2016-06-14

    Arch86] J. Archibald and J. Baer, "An Evaluation of Cache Coherence So lutions in Shared-Bus Multiprocessors", ACM Transactions on Computer Systen...Agarwal and A. Gupta, "Memory-Refer ence Olaracteristics of Multiprocessor Applications under MACH", Proceedings of the 1 988 ACM Sigmerrics Conference on...Evaluation of Cache Coherence Solutions in Shared-Bus Multiprocessors", ACM Transactions on Computer Systems, 4, 4 (November 1986), 273-298. [Baro85

  1. Compiling CIL Rewriting Language for Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    田新民; 王鼎兴; 等

    1994-01-01

    The high-level Conpiler Intermediate Language CIL is a general-purpose description language of parallel graph rewriting computational model intended for paralled implementation of declarative languages on multiprocessor systems.In this paper,we first outline a new Hybrid Execution Model(HEM) and corresponding parallel abstract machine PAM/TGR based on extended parallel Graph Rewriting Computational Model EGRCM for implementing CIL language on distributed memory multiprocessor systems.Then we focus on the compiling CIL language with various optimizing techniques such as pattern matching,rule indexing,node ordering and compile-time partial scheduling.The experimental results on a 16-node transputer Array demonstrates the effectiveness of our model and strategies.

  2. Academic training: Advanced lectures on multiprocessor programming

    CERN Multimedia

    PH Department

    2011-01-01

    Academic Training Lecture - Regular Programme 31 October 1, 2 November 2011 from 11:00 to 12:00 -  IT Auditorium, Bldg. 31   Three classes (60 mins) on Multiprocessor Programming Prof. Dr. Christoph von Praun Georg-Simon-Ohm University of Applied Sciences Nuremberg, Germany This is an advanced class on multiprocessor programming. The class gives an introduction to principles of concurrent objects and the notion of different progress guarantees that concurrent computations can have. The focus of this class is on non-blocking computations, i.e. concurrent programs that do not make use of locks. We discuss the implementation of practical non-blocking data structures in detail. 1st class: Introduction to concurrent objects 2nd class: Principles of non-blocking synchronization 3rd class: Concurrent queues Brief Bio of Christoph von Praun Christoph worked on a variety of analysis techniques and runtime platforms for parallel programs. Hist most recent research studies programming models an...

  3. Models and formal verification of multiprocessor system-on-chips

    DEFF Research Database (Denmark)

    Brekling, Aske Wiid; Hansen, Michael Reichhardt; Madsen, Jan

    2008-01-01

    In this article we develop a model for applications running on multiprocessor platforms. An application is modelled by task graphs and a multiprocessor system is modelled by a number of processing elements, each capable of executing tasks according to a given scheduling discipline. We present a d...... could verify a smart-phone application consisting of 103 tasks executing on 4 processing elements....

  4. Temporal Partitioning and Multi-Processor Scheduling for Reconfigurable Architectures

    DEFF Research Database (Denmark)

    Popp, Andreas; Le Moullec, Yannick; Koch, Peter

    This poster presentation outlines a proposed framework for handling mapping of signal processing applications to heterogeneous reconfigurable architectures. The methodology consists of an extension to traditional multi-processor scheduling by creating a separate HW track for generation of groups...... of tasks that are handled similarly to SW processes in a traditional multi-processor scheduling context....

  5. Dynamically Reconfigurable FFTs for Cognitive Radio on a Multiprocessor Platform

    NARCIS (Netherlands)

    Zhang, Qiwei; Walters, K.H.G.; Kokkeler, A.B.J.; Smit, G.J.M.

    2008-01-01

    Multiprocessor platforms have been proposed as an enabling technology for Cognitive Radio. In this paper, we explore various FFT implementations on a multiprocessor prototype platform as building components for OFDM based Cognitive Radio. The results show that our FFT implementations on the multipro

  6. Distributed parallel messaging for multiprocessor systems

    Science.gov (United States)

    Chen, Dong; Heidelberger, Philip; Salapura, Valentina; Senger, Robert M; Steinmacher-Burrow, Burhard; Sugawara, Yutaka

    2013-06-04

    A method and apparatus for distributed parallel messaging in a parallel computing system. The apparatus includes, at each node of a multiprocessor network, multiple injection messaging engine units and reception messaging engine units, each implementing a DMA engine and each supporting both multiple packet injection into and multiple reception from a network, in parallel. The reception side of the messaging unit (MU) includes a switch interface enabling writing of data of a packet received from the network to the memory system. The transmission side of the messaging unit, includes switch interface for reading from the memory system when injecting packets into the network.

  7. A multiprocessor airborne lidar data system

    Science.gov (United States)

    Wright, C. W.; Bailey, S. A.; Heath, G. E.; Piazza, C. R.

    1988-01-01

    A new multiprocessor data acquisition system was developed for the existing Airborne Oceanographic Lidar (AOL). This implementation simultaneously utilizes five single board 68010 microcomputers, the UNIX system V operating system, and the real time executive VRTX. The original data acquisition system was implemented on a Hewlett Packard HP 21-MX 16 bit minicomputer using a multi-tasking real time operating system and a mixture of assembly and FORTRAN languages. The present collection of data sources produce data at widely varied rates and require varied amounts of burdensome real time processing and formatting. It was decided to replace the aging HP 21-MX minicomputer with a multiprocessor system. A new and flexible recording format was devised and implemented to accommodate the constantly changing sensor configuration. A central feature of this data system is the minimization of non-remote sensing bus traffic. Therefore, it is highly desirable that each micro be capable of functioning as much as possible on-card or via private peripherals. The bus is used primarily for the transfer of remote sensing data to or from the buffer queue.

  8. Insertion of coherence requests for debugging a multiprocessor

    Science.gov (United States)

    Blumrich, Matthias A.; Salapura, Valentina

    2010-02-23

    A method and system are disclosed to insert coherence events in a multiprocessor computer system, and to present those coherence events to the processors of the multiprocessor computer system for analysis and debugging purposes. The coherence events are inserted in the computer system by adding one or more special insert registers. By writing into the insert registers, coherence events are inserted in the multiprocessor system as if they were generated by the normal coherence protocol. Once these coherence events are processed, the processing of coherence events can continue in the normal operation mode.

  9. Parallel Execution of Prolog on Shared—Memory Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    高耀清; 王鼎兴; 等

    1993-01-01

    Logic programs offer many opportunities for the exploitation of parallelism.But the parallel execution of a task incurs various overheads.This paper focuses on the issues relevant to parallelizing Prolog on shared-memory multiprocessors efficiently.

  10. Approximation algorithm for multiprocessor parallel job scheduling

    Institute of Scientific and Technical Information of China (English)

    陈松乔; 黄金贵; 陈建二

    2002-01-01

    Pk|fix|Cmax problem is a new scheduling problem based on the multiprocessor parallel job, and it is proved to be NP-hard problem when k≥3. This paper focuses on the case of k=3. Some new observations and new techniques for P3|fix|Cmax problem are offered. The concept of semi-normal schedulings is introduced, and a very simple linear time algorithm Semi-normal Algorithm for constructing semi-normal schedulings is developed. With the method of the classical Graham List Scheduling, a thorough analysis of the optimal scheduling on a special instance is provided, which shows that the algorithm is an approximation algorithm of ratio of 9/8 for any instance of P3|fix|Cmax problem, and improves the previous best ratio of 7/6 by M.X.Goemans.

  11. Multiprocessor Priority Ceiling Emulation for Safety-Critical Java

    DEFF Research Database (Denmark)

    Strøm, Torur Biskopstø; Schoeberl, Martin

    2015-01-01

    Priority ceiling emulation has preferable properties on uniprocessor systems, such as avoiding priority inversion and being deadlock free. This has made it a popular locking protocol. According to the safety-critical Java specication, priority ceiling emulation is a requirement for implementations....... However, implementing the protocol for multiprocessor systemsis more complex so implementations might perform worse than non-preemptive implementations. In this paper we compare two multiprocessor lock implementations with hardware support for the Java optimized processor: non-preemptive locking...

  12. Partitioning the Conventional DBT System for Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    Ru-Hui Ma; Hai-Bing Guan; Er-Zhou Zhu; Hong-Bo Yang; Yin-Dong Yang; A-Lei Liang

    2011-01-01

    Noticeable performance improvement via ever-increasing transistors is gradually trapped into a predicament since software cannot logically and efficiently utilize hardware resource, such as multi-core resource. This is an inevitable problem in dynamic binary translation (DBT) system as well. Though special purpose hardware as aide tool, through some interfaces, provided by DBT enables the system to achieve higher performance, the limitation of it is significant, that is, it is impossible to be used widely by another one. To overcome this drawback, we focus on building compatible software architecture to acquire higher performance without platform dependence. In this paper, we propose a novel multithreaded architecture for DBT system through partitioning distinct function module, which is to adequately utilize multiprocessors resource. This new architecture devides couples the common DBT system (DBTs) working routine into dynamic translation, optimization, and translated code execution phases, and then ramifies them into different threads to enable them concurrently executed. In this new architecture, several efficient novel methods are presented to cope with intractable work that puzzles most researchers, such as communication mechanism, cache layout, and mutual exclusion between threads. Experimental results using SPECint 2000 indicate that this new architecture for DBT system can achieve higher performance-speed up the traditional DBT system by about average 10.75%, with better CPU utilization.

  13. Improved Approximations for Multiprocessor Scheduling Under Uncertainty

    CERN Document Server

    Crutchfield, Christopher; Fineman, Jeremy T; Karger, David R; Scott, Jacob

    2008-01-01

    This paper presents improved approximation algorithms for the problem of multiprocessor scheduling under uncertainty, or SUU, in which the execution of each job may fail probabilistically. This problem is motivated by the increasing use of distributed computing to handle large, computationally intensive tasks. In the SUU problem we are given n unit-length jobs and m machines, a directed acyclic graph G of precedence constraints among jobs, and unrelated failure probabilities q_{ij} for each job j when executed on machine i for a single timestep. Our goal is to find a schedule that minimizes the expected makespan, which is the expected time at which all jobs complete. Lin and Rajaraman gave the first approximations for this NP-hard problem for the special cases of independent jobs, precedence constraints forming disjoint chains, and precedence constraints forming trees. In this paper, we present asymptotically better approximation algorithms. In particular, we give an O(loglog min(m,n))-approximation for indep...

  14. Operating System for Runtime Reconfigurable Multiprocessor Systems

    Directory of Open Access Journals (Sweden)

    Diana Göhringer

    2011-01-01

    Full Text Available Operating systems traditionally handle the task scheduling of one or more application instances on processor-like hardware architectures. RAMPSoC, a novel runtime adaptive multiprocessor System-on-Chip, exploits the dynamic reconfiguration on FPGAs to generate, start and terminate hardware and software tasks. The hardware tasks have to be transferred to the reconfigurable hardware via a configuration access port. The software tasks can be loaded into the local memory of the respective IP core either via the configuration access port or via the on-chip communication infrastructure (e.g. a Network-on-Chip. Recent-series of Xilinx FPGAs, such as Virtex-5, provide two Internal Configuration Access Ports, which cannot be accessed simultaneously. To prevent conflicts, the access to these ports as well as the hardware resource management needs to be controlled, e.g. by a special-purpose operating system running on an embedded processor. For that purpose and to handle the relations between temporally and spatially scheduled operations, the novel approach of an operating system is of high importance. This special purpose operating system, called CAP-OS (Configuration Access Port-Operating System, which will be presented in this paper, supports the clients using the configuration port with the services of priority-based access scheduling, hardware task mapping and resource management.

  15. Coscheduling Technique for Symmetric Multiprocessor Clusters

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, A B; Jette, M A

    2000-09-18

    Coscheduling is essential for obtaining good performance in a time-shared symmetric multiprocessor (SMP) cluster environment. However, the most common technique, gang scheduling, has limitations such as poor scalability and vulnerability to faults mainly due to explicit synchronization between its components. A decentralized approach called dynamic coscheduling (DCS) has been shown to be effective for network of workstations (NOW), but this technique is not suitable for the workloads on a very large SMP-cluster with thousands of processors. Furthermore, its implementation can be prohibitively expensive for such a large-scale machine. IN this paper, they propose a novel coscheduling technique based on the DCS approach which can achieve coscheduling on very large SMP-clusters in a scalable, efficient, and cost-effective way. In the proposed technique, each local scheduler achieves coscheduling based upon message traffic between the components of parallel jobs. Message trapping is carried out at the user-level, eliminating the need for unsupported hardware or device-level programming. A sending process attaches its status to outgoing messages so local schedulers on remote nodes can make more intelligent scheduling decisions. Once scheduled, processes are guaranteed some minimum period of time to execute. This provides an opportunity to synchronize the parallel job's components across all nodes and achieve good program performance. The results from a performance study reveal that the proposed technique is a promising approach that can reduce response time significantly over uncoordinated time-sharing and batch scheduling.

  16. Experimental evaluation of multiprocessor cache-based error recovery

    Science.gov (United States)

    Janssens, Bob; Fuchs, W. K.

    1991-01-01

    Several variations of cache-based checkpointing for rollback error recovery in shared-memory multiprocessors have been recently developed. By modifying the cache replacement policy, these techniques use the inherent redundancy in the memory hierarchy to periodically checkpoint the computation state. Three schemes, different in the manner in which they avoid rollback propagation, are evaluated. By simulation with address traces from parallel applications running on an Encore Multimax shared-memory multiprocessor, the performance effect of integrating the recovery schemes in the cache coherence protocol are evaluated. The results indicate that the cache-based schemes can provide checkpointing capability with low performance overhead but uncontrollable high variability in the checkpoint interval.

  17. Chip-Multiprocessor Hardware Locks for Safety-Critical Java

    DEFF Research Database (Denmark)

    Strøm, Torur Biskopstø; Puffitsch, Wolfgang; Schoeberl, Martin

    2013-01-01

    and may void a task set's schedulability. In this paper we present a hardware locking mechanism to reduce the synchronization overhead. The solution is implemented for the chip-multiprocessor version of the Java Optimized Processor in the context of safety-critical Java. The implementation is compared...

  18. Geometric Algorithms for Private-Cache Chip Multiprocessors

    DEFF Research Database (Denmark)

    Ajwani, Deepak; Sitchinava, Nodari; Zeh, Norbert

    2010-01-01

    We study techniques for obtaining efficient algorithms for geometric problems on private-cache chip multiprocessors. We show how to obtain optimal algorithms for interval stabbing counting, 1-D range counting, weighted 2-D dominance counting, and for computing 3-D maxima, 2-D lower envelopes, and 2...

  19. Techniques and tools for efficiently modeling multiprocessor systems

    Science.gov (United States)

    Carpenter, T.; Yalamanchili, S.

    1990-01-01

    System-level tools and methodologies associated with an integrated approach to the development of multiprocessor systems are examined. Tools for capturing initial program structure, automated program partitioning, automated resource allocation, and high-level modeling of the combined application and resource are discussed. The primary language focus of the current implementation is Ada, although the techniques should be appropriate for other programming paradigms.

  20. Communication aware multiprocessor binding for shared memory systems

    NARCIS (Netherlands)

    Adyanthaya, S.; Geilen, M.; Basten, T.; Voeten, J.; Schiffelers, R.

    2016-01-01

    We present a three-step binding algorithm for applications in the form of directed acyclic graphs (DAGs) of tasks with deadlines, that need to be bound to a shared memory multiprocessor platform. The aim of the algorithm is to obtain a good binding that results in low makespans of the schedules of t

  1. Multi-Constraint multi-processor Resource Allocation

    NARCIS (Netherlands)

    Behrouzian, A.R.B.; Goswami, D.; Basten, T.; Geilen, M.; Ara, H.A.

    2015-01-01

    This work proposes a Multi-Constraint Resource Allocation (MuCoRA) method for applications from multiple domains onto multi-processors. In particular, we address a mapping problem for multiple throughput-constrained streaming applications and multiple latency-constrained feedback control application

  2. Queueing analysis of a canonical model of real-time multiprocessors

    Science.gov (United States)

    Krishna, C. M.; Shin, K. G.

    1983-01-01

    A logical classification of multiprocessor structures from the point of view of control applications is presented. A computation of the response time distribution for a canonical model of a real time multiprocessor is presented. The multiprocessor is approximated by a blocking model. Two separate models are derived: one created from the system's point of view, and the other from the point of view of an incoming task.

  3. Energy-Aware Task Partitioning on Heterogeneous Multiprocessor Platforms

    CERN Document Server

    Saad, Elsayed; Shalan, Mohamed; Elewi, Abdullah

    2012-01-01

    Efficient task partitioning plays a crucial role in achieving high performance at multiprocessor plat forms. This paper addresses the problem of energy-aware static partitioning of periodic real-time tasks on heterogeneous multiprocessor platforms. A Particle Swarm Optimization variant based on Min-min technique for task partitioning is proposed. The proposed approach aims to minimize the overall energy consumption, meanwhile avoid deadline violations. An energy-aware cost function is proposed to be considered in the proposed approach. Extensive simulations and comparisons are conducted in order to validate the effectiveness of the proposed technique. The achieved results demonstrate that the proposed partitioning scheme significantly surpasses previous approaches in terms of both number of iterations and energy savings.

  4. Algorithms for semi on-line multiprocessor scheduling problems

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In the classical multiprocessor scheduling problems, it is assumed that the problems are considered in off-line or on-line environment. But in practice, problems are often not really off-line or on-line but somehow in between. This means that, with respect to the on-line problem, some further information about the tasks is available, which allows the improvement of the performance of the best possible algorithms. Problems of this class are called semi on-line ones. The authors studied two semi on-line multiprocessor scheduling problems, in which, the total processing time of all tasks is known in advance, or all processing times lie in a given interval. They proposed approximation algorithms for minimizing the makespan and analyzed their performance guarantee. The algorithms improve the known results for 3 or more processor cases in the literature.

  5. Using Pin as a Memory Reference Generator for Multiprocessor Simulation

    Energy Technology Data Exchange (ETDEWEB)

    McCurdy, C

    2005-10-22

    In this paper we describe how we have used Pin to generate a multithreaded reference stream for simulation of a multiprocessor on a uniprocessor. We have taken special care to model as accurately as possible the effects of cache coherence protocol state, and lock and barrier synchronization on the performance of multithreaded applications running on multiprocessor hardware. We first describe a simplified version of the algorithm, which uses semaphores to synchronize instrumented application threads and the simulator on every memory reference. We then describe modifications to that algorithm to model the microarchitectural features of the Itanium2 that affect the timing of memory reference issue. An experimental evaluation determines that while cycle-accurate multithreaded simulation is possible using our approach, the use of semaphores has a negative impact on the performance of the simulator.

  6. Advanced lectures on multiprocessor programming (1/3)

    CERN Document Server

    CERN. Geneva

    2011-01-01

    Three classes (60 mins) on Multiprocessor Programming Prof. Dr. Christoph von Praun Georg-Simon-Ohm University of Applied Sciences Nuremberg, Germany This is an advanced class on multiprocessor programming. The class gives an introduction to principles of concurrent objects and the notion of different progress guarantees that concurrent computations can have. The focus of this class is on non-blocking computations, i.e. concurrent programs that do not make use of locks. We discuss the implementation of practical non-blocking data structures in detail. 1st class: Introduction to concurrent objects 2nd class: Principles of non-blocking synchronization 3rd class: Concurrent queues Brief Bio of Christoph von Praun Christoph worked on a variety of analysis techniques and runtime platforms for parallel programs. Hist most recent research studies programming models and tools that support transactional synchronization. In prior work, which he also did at the IBM T.J. Watson Research Center in Yorktown Height...

  7. Thermal Balancing Policy for Multiprocessor Stream Computing Platforms

    OpenAIRE

    Mulas, Fabrizio; Atienza, David; Acquaviva, Andrea; Carta, Salvatore; Benini, Luca; Micheli, Giovanni De

    2009-01-01

    Die-temperature control to avoid hotspots is increasingly critical in Multiprocessor System-on-Chip (MPSoCs) for stream computing. In this context, thermal balancing policies based on task migration are a promising approach to re-distribute power dissipation and even out temperature gradients. Since stream computing applications require strict quality of service and timing constraints, the real-time performance impact of thermal balancing policies must be carefully evaluated. In this pa...

  8. Cache as point of coherence in multiprocessor system

    Energy Technology Data Exchange (ETDEWEB)

    Blumrich, Matthias A.; Ceze, Luis H.; Chen, Dong; Gara, Alan; Heidelberger, Phlip; Ohmacht, Martin; Steinmacher-Burow, Burkhard; Zhuang, Xiaotong

    2016-11-29

    In a multiprocessor system, a conflict checking mechanism is implemented in the L2 cache memory. Different versions of speculative writes are maintained in different ways of the cache. A record of speculative writes is maintained in the cache directory. Conflict checking occurs as part of directory lookup. Speculative versions that do not conflict are aggregated into an aggregated version in a different way of the cache. Speculative memory access requests do not go to main memory.

  9. Modelling parallel programs and multiprocessor architectures with AXE

    Science.gov (United States)

    Yan, Jerry C.; Fineman, Charles E.

    1991-01-01

    AXE, An Experimental Environment for Parallel Systems, was designed to model and simulate for parallel systems at the process level. It provides an integrated environment for specifying computation models, multiprocessor architectures, data collection, and performance visualization. AXE is being used at NASA-Ames for developing resource management strategies, parallel problem formulation, multiprocessor architectures, and operating system issues related to the High Performance Computing and Communications Program. AXE's simple, structured user-interface enables the user to model parallel programs and machines precisely and efficiently. Its quick turn-around time keeps the user interested and productive. AXE models multicomputers. The user may easily modify various architectural parameters including the number of sites, connection topologies, and overhead for operating system activities. Parallel computations in AXE are represented as collections of autonomous computing objects known as players. Their use and behavior is described. Performance data of the multiprocessor model can be observed on a color screen. These include CPU and message routing bottlenecks, and the dynamic status of the software.

  10. Helikite Elevated Platform (HEP)

    Science.gov (United States)

    2007-11-02

    deflation and stowage of the system prior to movement. The second wind speed examined represents a more rare condition where the helikite would have to be...winch, electric generator, payload stowage , helikite, and miscellaneous items. The Carrier will be designed within the constraints of the trailer weight...the HEP could be emplaced using a cargo version HMMWV equipped with a rack of helium tanks. The Helikite would be inflated at the first site using

  11. Common HEP UNIX Environment

    Science.gov (United States)

    Taddei, Arnaud

    After it had been decided to design a common user environment for UNIX platforms among HEP laboratories, a joint project between DESY and CERN had been started. The project consists in 2 phases: 1. Provide a common user environment at shell level, 2. Provide a common user environment at graphical level (X11). Phase 1 is in production at DESY and at CERN as well as at PISA and RAL. It has been developed around the scripts originally designed at DESY Zeuthen improved and extended with a 2 months project at CERN with a contribution from DESY Hamburg. It consists of a set of files which are customizing the environment for the 6 main shells (sh, csh, ksh, bash, tcsh, zsh) on the main platforms (AIX, HP-UX, IRIX, SunOS, Solaris 2, OSF/1, ULTRIX, etc.) and it is divided at several "sociological" levels: HEP, site, machine, cluster, group of users and user with some levels which are optional. The second phase is under design and a first proposal has been published. A first version of the phase 2 exists already for AIX and Solaris, and it should be available for all other platforms, by the time of the conference. This is a major collective work between several HEP laboratories involved in the HEPiX-scripts and HEPiX-X11 working-groups.

  12. Cyclic executive for safety-critical Java on chip-multiprocessors

    DEFF Research Database (Denmark)

    Ravn, Anders P.; Schoeberl, Martin

    2010-01-01

    , that uses model checking to find a static schedule, if one exists at all, which gives an implementation of a table driven multiprocessor scheduler. To evaluate the proposed cyclic executive for multiprocessors we have implemented it in the context of safety-critical Java on a Java processor....

  13. A system-level design method for cognitive radio on a reconfigurable multi-processor architecture

    NARCIS (Netherlands)

    Zhang, Qiwei; Kokkeler, A.B.J.; Smit, G.J.M.

    2007-01-01

    The future trend of software defined radio (SDR) platforms moves toward reconfigurable Multiprocessor System-on−Chips (MPSoCs). However, there is a gap between the modelling of the dynamic radio applications and the optimized implementation of the application on reconfigurable multiprocessor archite

  14. SLAC SPIRES HEP database

    CERN Document Server

    Contains over 400,000 bibliographic summaries for particle physics papers (e-prints, journal articles, preprints, reports, theses, etc.). Covers 1974 to the present and is updated daily with links to electronic texts ( e.g. from LANL, CERN, KEK, and other HEP servers). Searchable by all authors and authors' affiliations, title, topic, report number, citation (footnotes), e-print archive number, date, journal, etc. A joint project of the SLAC and DESY libraries with the collaboration of many other research institutions and scholarly societies such as the APS.

  15. Programmable partitioning for high-performance coherence domains in a multiprocessor system

    Science.gov (United States)

    Blumrich, Matthias A.; Salapura, Valentina

    2011-01-25

    A multiprocessor computing system and a method of logically partitioning a multiprocessor computing system are disclosed. The multiprocessor computing system comprises a multitude of processing units, and a multitude of snoop units. Each of the processing units includes a local cache, and the snoop units are provided for supporting cache coherency in the multiprocessor system. Each of the snoop units is connected to a respective one of the processing units and to all of the other snoop units. The multiprocessor computing system further includes a partitioning system for using the snoop units to partition the multitude of processing units into a plurality of independent, memory-consistent, adjustable-size processing groups. Preferably, when the processor units are partitioned into these processing groups, the partitioning system also configures the snoop units to maintain cache coherency within each of said groups.

  16. HEP in Greek Classes

    Science.gov (United States)

    Fassouliotis, Dimitris; Kourkoumelis, Christine; Vourakis, Stylianos

    2017-03-01

    The HEP Inquiry learning resources created over the last four years by the European outreach projects are reviewed. The resources are mostly addressed to high school students and the purpose is to ignite their interest on science. In addition, at the University of Athens for the last four years we have been using the HYPATIA online event analysis tool as a lab course for fourth year undergraduate physics students, majoring in HEP. Each year 40-50 students highly appreciated the course, since they get a direct involvement in the actual toplevel research. Up to now, the course was limited to visual inspection of a few tens of ATLAS events. Recently we have enriched the course with additional analysis exercises, which involve large samples of events. The students, through a user friendly interface can analyze the samples (both signal and background ones) and optimize the cut selection in order to search for the Higgs decay H □ 4 leptons. Recently ATLAS released 1/fb of data, so starting now the students analyse real data.

  17. Optimized Parallel Execution of Declarative Programs on Distributed Memory Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    沈美明; 田新民; 等

    1993-01-01

    In this paper,we focus on the compiling implementation of parlalel logic language PARLOG and functional language ML on distributed memory multiprocessors.Under the graph rewriting framework, a Heterogeneous Parallel Graph Rewriting Execution Model(HPGREM)is presented firstly.Then based on HPGREM,a parallel abstact machine PAM/TGR is described.Furthermore,several optimizing compilation schemes for executing declarative programs on transputer array are proposed.The performance statistics on transputer array demonstrate the effectiveness of our model,parallel abstract machine,optimizing compilation strategies and compiler.

  18. Chip Multiprocessor Architecture Techniques to Improve Throughput and Latency

    CERN Document Server

    Olukotun, Kunle

    2007-01-01

    Chip multiprocessors - also called multi-core microprocessors or CMPs for short - are now the only way to build high-performance microprocessors, for a variety of reasons. Large uniprocessors are no longer scaling in performance, because it is only possible to extract a limited amount of parallelism from a typical instruction stream using conventional superscalar instruction issue techniques. In addition, one cannot simply ratchet up the clock speed on today's processors, or the power dissipation will become prohibitive in all but water-cooled systems. Compounding these problems is the simple

  19. A reconfigurable optoelectronic interconnect technology for multi-processor networks

    Energy Technology Data Exchange (ETDEWEB)

    Lu, Y.C.; Cheng, J. [Univ. of New Mexico, Albuquerque, NM (United States). Center for High Technology Materials; Zolper, J.C.; Klem, J. [Sandia National Labs., Albuquerque, NM (United States)

    1995-05-01

    This paper describes a new optical interconnect architecture and the integrated optoelectronic circuit technology for implementing a parallel, reconfigurable, multiprocessor network. The technology consists of monolithic array`s of optoelectronic switches that integrate vertical-cavity surface-emitting lasers with three-terminal heterojunction phototransistors, which effectively combined the functions of an optical transceiver and an optical spatial routing switch. These switches have demonstrated optical switching at 200 Mb/s, and electrical-to-optical data conversion at > 500 Mb/s, with a small-signal electrical-to-optical modulation bandwidth of {approximately} 4 GHz.

  20. Multiprocessor system with multiple concurrent modes of execution

    Energy Technology Data Exchange (ETDEWEB)

    Ahn, Daniel; Ceze, Luis H.; Chen, Dong Chen; Gara, Alan; Heidelberger, Philip; Ohmacht, Martin

    2016-11-22

    A multiprocessor system supports multiple concurrent modes of speculative execution. Speculation identification numbers (IDs) are allocated to speculative threads from a pool of available numbers. The pool is divided into domains, with each domain being assigned to a mode of speculation. Modes of speculation include TM, TLS, and rollback. Allocation of the IDs is carried out with respect to a central state table and using hardware pointers. The IDs are used for writing different versions of speculative results in different ways of a set in a cache memory.

  1. Error Recovery in a Real—Time Multiprocessor System

    Institute of Scientific and Technical Information of China (English)

    李卫华; 袁由光

    1992-01-01

    In this paper,a new scheme for recovering errors due to transient faults in a real-time multiprocessor system is presented.The scheme,called dynamic redundancy at the task level,is implemented in a real-time multitasking environment,Utilizing the facilities in the operating system,the scheme makes backup tasks for the primary tasks as redundancy.The paper introdues an algorithm to generate a fault tolerant schedule for the tasks so that they recover errors as retry of checkpointing does.A reliability model is proposed to evahuste the effectiveness of the scheme.

  2. Inter Processor Communication for Fault Diagnosis in Multiprocessor Systems

    Directory of Open Access Journals (Sweden)

    C. D. Malleswar

    1994-04-01

    Full Text Available In the preseJlt paper a simple technique is proposed for fault diagnosis for multiprocessor and multiple system environments, wherein all microprocessors in the system are used in part to check the health of their neighbouring processors. It involves building simple fail-safe serial communication links between processors. Processors communicate with each other over these links and each processor is made to go through certain sequences of actions intended for diagnosis, under the observation of another processor .With limited overheads, fault detection can be done by this method. Also outlined are some of the popular techniques used for health check of processor-based systems.

  3. Elastic pointer directory organization for scalable shared memory multiprocessors

    Institute of Scientific and Technical Information of China (English)

    Yuhang Liu; Mingfa Zhu; Limin Xiao

    2014-01-01

    In the field of supercomputing, one key issue for scal-able shared-memory multiprocessors is the design of the directory which denotes the sharing state for a cache block. A good direc-tory design intends to achieve three key attributes: reasonable memory overhead, sharer position precision and implementation complexity. However, researchers often face the problem that gain-ing one attribute may result in losing another. The paper proposes an elastic pointer directory (EPD) structure based on the analysis of shared-memory applications, taking the fact that the number of sharers for each directory entry is typical y smal . Analysis re-sults show that for 4 096 nodes, the ratio of memory overhead to the ful-map directory is 2.7%. Theoretical analysis and cycle-accurate execution-driven simulations on a 16 and 64-node cache coherence non uniform memory access (CC-NUMA) multiproces-sor show that the corresponding pointer overflow probability is reduced significantly. The performance is observed to be better than that of a limited pointers directory and almost identical to the ful-map directory, except for the slight implementation complex-ity. Using the directory cache to explore directory access locality is also studied. The experimental result shows that this is a promis-ing approach to be used in the state-of-the-art high performance computing domain.

  4. Scalable MPEG-4 Encoder on FPGA Multiprocessor SOC

    Directory of Open Access Journals (Sweden)

    Marko Hännikäinen

    2006-10-01

    Full Text Available High computational requirements combined with rapidly evolving video coding algorithms and standards are a great challenge for contemporary encoder implementations. Rapid specification changes prefer full programmability and configurability both for software and hardware. This paper presents a novel scalable MPEG-4 video encoder on an FPGA-based multiprocessor system-on-chip (MPSOC. The MPSOC architecture is truly scalable and is based on a vendor-independent intellectual property (IP block interconnection network. The scalability in video encoding is achieved by spatial parallelization where images are divided to horizontal slices. A case design is presented with up to four synthesized processors on an Altera Stratix 1S40 device. A truly portable ANSI-C implementation that supports an arbitrary number of processors gives 11 QCIF frames/s at 50 MHz without processor specific optimizations. The parallelization efficiency is 97% for two processors and 93% with three. The FPGA utilization is 70%, requiring 28 797 logic elements. The implementation effort is significantly lower compared to traditional multiprocessor implementations.

  5. Scalable MPEG-4 Encoder on FPGA Multiprocessor SOC

    Directory of Open Access Journals (Sweden)

    Kulmala Ari

    2006-01-01

    Full Text Available High computational requirements combined with rapidly evolving video coding algorithms and standards are a great challenge for contemporary encoder implementations. Rapid specification changes prefer full programmability and configurability both for software and hardware. This paper presents a novel scalable MPEG-4 video encoder on an FPGA-based multiprocessor system-on-chip (MPSOC. The MPSOC architecture is truly scalable and is based on a vendor-independent intellectual property (IP block interconnection network. The scalability in video encoding is achieved by spatial parallelization where images are divided to horizontal slices. A case design is presented with up to four synthesized processors on an Altera Stratix 1S40 device. A truly portable ANSI-C implementation that supports an arbitrary number of processors gives 11 QCIF frames/s at 50 MHz without processor specific optimizations. The parallelization efficiency is 97% for two processors and 93% with three. The FPGA utilization is 70%, requiring 28 797 logic elements. The implementation effort is significantly lower compared to traditional multiprocessor implementations.

  6. Instrumentation, performance visualization, and debugging tools for multiprocessors

    Science.gov (United States)

    Yan, Jerry C.; Fineman, Charles E.; Hontalas, Philip J.

    1991-01-01

    The need for computing power has forced a migration from serial computation on a single processor to parallel processing on multiprocessor architectures. However, without effective means to monitor (and visualize) program execution, debugging, and tuning parallel programs becomes intractably difficult as program complexity increases with the number of processors. Research on performance evaluation tools for multiprocessors is being carried out at ARC. Besides investigating new techniques for instrumenting, monitoring, and presenting the state of parallel program execution in a coherent and user-friendly manner, prototypes of software tools are being incorporated into the run-time environments of various hardware testbeds to evaluate their impact on user productivity. Our current tool set, the Ames Instrumentation Systems (AIMS), incorporates features from various software systems developed in academia and industry. The execution of FORTRAN programs on the Intel iPSC/860 can be automatically instrumented and monitored. Performance data collected in this manner can be displayed graphically on workstations supporting X-Windows. We have successfully compared various parallel algorithms for computational fluid dynamics (CFD) applications in collaboration with scientists from the Numerical Aerodynamic Simulation Systems Division. By performing these comparisons, we show that performance monitors and debuggers such as AIMS are practical and can illuminate the complex dynamics that occur within parallel programs.

  7. Hardware support for CSP on a Java chip multiprocessor

    DEFF Research Database (Denmark)

    Gruian, Flavius; Schoeberl, Martin

    2013-01-01

    Due to memory bandwidth limitations, chip multiprocessors (CMPs) adopting the convenient shared memory model for their main memory architecture scale poorly. On-chip core-to-core communication is a solution to this problem, that can lead to further performance increase for a number of multithread......, depending on the communication and memory configuration. Application speed-up, on the other hand, is highly dependent on the type of processing, as our measurements show.......Due to memory bandwidth limitations, chip multiprocessors (CMPs) adopting the convenient shared memory model for their main memory architecture scale poorly. On-chip core-to-core communication is a solution to this problem, that can lead to further performance increase for a number of multithreaded......-chip communication channels, implemented by a ring-based network-on-chip (NoC), to reduce the memory bandwidth pressure on the shared memory.The presented solution is scalable and also specific for our limited resources and real-time predictability requirements. CMP architectures of three to eight processors were...

  8. Energy-Efficient Multiprocessor Scheduling for Flow Time and Makespan

    CERN Document Server

    Sun, Hongyang; Hsu, Wen-Jing

    2010-01-01

    We consider energy-efficient scheduling on multiprocessors, where the speed of each processor can be individually scaled, and a processor consumes power $s^{\\alpha}$ if it runs at speed $s$, where $\\alpha>1$. A scheduling algorithm needs to decide both processor allocations and speeds for a set of parallel jobs whose parallelism can vary with time. The objective is to minimize the sum of overall energy consumption and some performance metric, which in this paper includes flow time and makespan. For both objectives, we present semi-clairvoyant algorithms that are aware of the instantaneous parallelism of the jobs but not their future information. We present U-CEQ algorithm for flow time plus energy, and show that it is O(1)-competitive. This is the first O(1)-competitive result for multiprocessor speed scaling on parallel jobs. We also consider, for the first time in the literature, makespan plus energy. We present P-FIRST algorithm and show that it is $O(\\ln^{1-1/\\alpha}P)$-competitive for parallel jobs consi...

  9. Scheduling real-time streaming applications onto an embedded multiprocessor

    CERN Document Server

    Moreira, Orlando

    2014-01-01

    This book provides a comprehensive overview of the state-of-the-art, data flow-based techniques for the analysis, modeling and mapping technologies of concurrent applications on multi-processors.  The authors present a flow for designing embedded hard/firm real-time multiprocessor streaming applications, based on data flow formalisms, with a particular focus on wireless modem applications. Architectures are described for the design tools and run-time scheduling and resource management of such a platform.   • Provides a comprehensive overview of the complete design trajectory, based on data flow programming and analysis for multiprocessor systems; • Describes modeling techniques, with an emphasis on different data flow models for budget schedulers and the modeling of different schedulers; • Discusses other relevant data-flow models of computation, such as cyclo-static data flow and variable-rate data flow; • Includes other analysis and scheduling techniques, such as simulation-based throughput an...

  10. Thermal-Aware Scheduling for Future Chip Multiprocessors

    Directory of Open Access Journals (Sweden)

    Stavrou Kyriakos

    2007-01-01

    Full Text Available The increased complexity and operating frequency in current single chip microprocessors is resulting in a decrease in the performance improvements. Consequently, major manufacturers offer chip multiprocessor (CMP architectures in order to keep up with the expected performance gains. This architecture is successfully being introduced in many markets including that of the embedded systems. Nevertheless, the integration of several cores onto the same chip may lead to increased heat dissipation and consequently additional costs for cooling, higher power consumption, decrease of the reliability, and thermal-induced performance loss, among others. In this paper, we analyze the evolution of the thermal issues for the future chip multiprocessor architectures and show that as the number of on-chip cores increases, the thermal-induced problems will worsen. In addition, we present several scenarios that result in excessive thermal stress to the CMP chip or significant performance loss. In order to minimize or even eliminate these problems, we propose thermal-aware scheduler (TAS algorithms. When assigning processes to cores, TAS takes their temperature and cooling ability into account in order to avoid thermal stress and at the same time improve the performance. Experimental results have shown that a TAS algorithm that considers also the temperatures of neighboring cores is able to significantly reduce the temperature-induced performance loss while at the same time, decrease the chip's temperature across many different operation and configuration scenarios.

  11. Thermal-Aware Scheduling for Future Chip Multiprocessors

    Directory of Open Access Journals (Sweden)

    Pedro Trancoso

    2007-04-01

    Full Text Available The increased complexity and operating frequency in current single chip microprocessors is resulting in a decrease in the performance improvements. Consequently, major manufacturers offer chip multiprocessor (CMP architectures in order to keep up with the expected performance gains. This architecture is successfully being introduced in many markets including that of the embedded systems. Nevertheless, the integration of several cores onto the same chip may lead to increased heat dissipation and consequently additional costs for cooling, higher power consumption, decrease of the reliability, and thermal-induced performance loss, among others. In this paper, we analyze the evolution of the thermal issues for the future chip multiprocessor architectures and show that as the number of on-chip cores increases, the thermal-induced problems will worsen. In addition, we present several scenarios that result in excessive thermal stress to the CMP chip or significant performance loss. In order to minimize or even eliminate these problems, we propose thermal-aware scheduler (TAS algorithms. When assigning processes to cores, TAS takes their temperature and cooling ability into account in order to avoid thermal stress and at the same time improve the performance. Experimental results have shown that a TAS algorithm that considers also the temperatures of neighboring cores is able to significantly reduce the temperature-induced performance loss while at the same time, decrease the chip's temperature across many different operation and configuration scenarios.

  12. Method and apparatus for single-stepping coherence events in a multiprocessor system under software control

    Science.gov (United States)

    Blumrich, Matthias A.; Salapura, Valentina

    2010-11-02

    An apparatus and method are disclosed for single-stepping coherence events in a multiprocessor system under software control in order to monitor the behavior of a memory coherence mechanism. Single-stepping coherence events in a multiprocessor system is made possible by adding one or more step registers. By accessing these step registers, one or more coherence requests are processed by the multiprocessor system. The step registers determine if the snoop unit will operate by proceeding in a normal execution mode, or operate in a single-step mode.

  13. A Fault-Tolerant Multiprocessor for Real-Time Control Applications

    Science.gov (United States)

    Roberts, Thomas E.; Johnson, Barry W.

    1987-10-01

    This paper presents the design, analysis, and experimental evaluation of a fault-tolerant multiprocessor for use in systems requiring real-time, microprocessor-based control. Example applications of the fault-tolerant system are found in robotics, process control, manufacturing, and factory automation. The architecture for the multiprocessor is presented and analyzed for reliability, availability, and safety. A prototype of the fault-tolerant multiprocessor has been constructed, using Intel 8088 processors, and experimentally evaluated in the laboratory. Both hardware and software descriptions of the system are provided, and an example application to the control of an electric wheelchair is presented.

  14. Operating system for a real-time multiprocessor propulsion system simulator. User's manual

    Science.gov (United States)

    Cole, G. L.

    1985-01-01

    The NASA Lewis Research Center is developing and evaluating experimental hardware and software systems to help meet future needs for real-time, high-fidelity simulations of air-breathing propulsion systems. Specifically, the real-time multiprocessor simulator project focuses on the use of multiple microprocessors to achieve the required computing speed and accuracy at relatively low cost. Operating systems for such hardware configurations are generally not available. A real time multiprocessor operating system (RTMPOS) that supports a variety of multiprocessor configurations was developed at Lewis. With some modification, RTMPOS can also support various microprocessors. RTMPOS, by means of menus and prompts, provides the user with a versatile, user-friendly environment for interactively loading, running, and obtaining results from a multiprocessor-based simulator. The menu functions are described and an example simulation session is included to demonstrate the steps required to go from the simulation loading phase to the execution phase.

  15. Analysis and Optimisation of Hierarchically Scheduled Multiprocessor Embedded Systems

    DEFF Research Database (Denmark)

    Pop, Traian; Pop, Paul; Eles, Petru;

    2008-01-01

    , they are organised in a hierarchy. In this paper, we first develop a holistic scheduling and schedulability analysis that determines the timing properties of a hierarchically scheduled system. Second, we address design problems that are characteristic to such hierarchically scheduled systems: assignment......We present an approach to the analysis and optimisation of heterogeneous multiprocessor embedded systems. The systems are heterogeneous not only in terms of hardware components, but also in terms of communication protocols and scheduling policies. When several scheduling policies share a resource...... of scheduling policies to tasks, mapping of tasks to hardware components, and the scheduling of the activities. We also present several algorithms for solving these problems. Our heuristics are able to find schedulable implementations under limited resources, achieving an efficient utilisation of the system...

  16. Parallel algorithm of VLBI software correlator under multiprocessor environment

    Science.gov (United States)

    Zheng, Weimin; Zhang, Dong

    2007-11-01

    The correlator is the key signal processing equipment of a Very Lone Baseline Interferometry (VLBI) synthetic aperture telescope. It receives the mass data collected by the VLBI observatories and produces the visibility function of the target, which can be used to spacecraft position, baseline length measurement, synthesis imaging, and other scientific applications. VLBI data correlation is a task of data intensive and computation intensive. This paper presents the algorithms of two parallel software correlators under multiprocessor environments. A near real-time correlator for spacecraft tracking adopts the pipelining and thread-parallel technology, and runs on the SMP (Symmetric Multiple Processor) servers. Another high speed prototype correlator using the mixed Pthreads and MPI (Massage Passing Interface) parallel algorithm is realized on a small Beowulf cluster platform. Both correlators have the characteristic of flexible structure, scalability, and with 10-station data correlating abilities.

  17. Behavioral Simulation and Performance Evaluation of Multi-Processor Architectures

    Directory of Open Access Journals (Sweden)

    Ausif Mahmood

    1996-01-01

    Full Text Available The development of multi-processor architectures requires extensive behavioral simulations to verify the correctness of design and to evaluate its performance. A high level language can provide maximum flexibility in this respect if the constructs for handling concurrent processes and a time mapping mechanism are added. This paper describes a novel technique for emulating hardware processes involved in a parallel architecture such that an object-oriented description of the design is maintained. The communication and synchronization between hardware processes is handled by splitting the processes into their equivalent subprograms at the entry points. The proper scheduling of these subprograms is coordinated by a timing wheel which provides a time mapping mechanism. Finally, a high level language pre-processor is proposed so that the timing wheel and the process emulation details can be made transparent to the user.

  18. An Adaptive Hybrid Multiprocessor technique for bioinformatics sequence alignment

    KAUST Repository

    Bonny, Talal

    2012-07-28

    Sequence alignment algorithms such as the Smith-Waterman algorithm are among the most important applications in the development of bioinformatics. Sequence alignment algorithms must process large amounts of data which may take a long time. Here, we introduce our Adaptive Hybrid Multiprocessor technique to accelerate the implementation of the Smith-Waterman algorithm. Our technique utilizes both the graphics processing unit (GPU) and the central processing unit (CPU). It adapts to the implementation according to the number of CPUs given as input by efficiently distributing the workload between the processing units. Using existing resources (GPU and CPU) in an efficient way is a novel approach. The peak performance achieved for the platforms GPU + CPU, GPU + 2CPUs, and GPU + 3CPUs is 10.4 GCUPS, 13.7 GCUPS, and 18.6 GCUPS, respectively (with the query length of 511 amino acid). © 2010 IEEE.

  19. Fundamental Parallel Algorithms for Private-Cache Chip Multiprocessors

    DEFF Research Database (Denmark)

    Arge, Lars Allan; Goodrich, Michael T.; Nelson, Michael

    2008-01-01

    In this paper, we study parallel algorithms for private-cache chip multiprocessors (CMPs), focusing on methods for foundational problems that are scalable with the number of cores. By focusing on private-cache CMPs, we show that we can design efficient algorithms that need no additional assumptions...... about the way cores are interconnected, for we assume that all inter-processor communication occurs through the memory hierarchy. We study several fundamental problems, including prefix sums, selection, and sorting, which often form the building blocks of other parallel algorithms. Indeed, we present...... two sorting algorithms, a distribution sort and a mergesort. Our algorithms are asymptotically optimal in terms of parallel cache accesses and space complexity under reasonable assumptions about the relationships between the number of processors, the size of memory, and the size of cache blocks...

  20. Hardware locks for a real-time Java chip multiprocessor

    DEFF Research Database (Denmark)

    Strøm, Torur Biskopstø; Puffitsch, Wolfgang; Schoeberl, Martin

    2016-01-01

    mechanisms are compared with a software locking solution as well as the original locking system of the processor. The hardware cost and performance are evaluated for all presented locking mechanisms. The performance of the better-performing hardware locks is comparable with that of the original single global...... lock when contending for the same lock. When several noncontending locks are used, the hardware locks enable true concurrency for critical sections. Benchmarks show that using the hardware locks yields performance ranging from no worse than the original locks to more than twice their best performance...... and may void a task set's schedulability. This paper presents 2 hardware locking mechanisms to reduce the worst-case time required to acquire and release synchronization locks. These solutions are implemented for the chip-multiprocessor version of the Java Optimized Processor. The 2 hardware locking...

  1. Testing and operating a multiprocessor chip with processor redundancy

    Energy Technology Data Exchange (ETDEWEB)

    Bellofatto, Ralph E; Douskey, Steven M; Haring, Rudolf A; McManus, Moyra K; Ohmacht, Martin; Schmunkamp, Dietmar; Sugavanam, Krishnan; Weatherford, Bryan J

    2014-10-21

    A system and method for improving the yield rate of a multiprocessor semiconductor chip that includes primary processor cores and one or more redundant processor cores. A first tester conducts a first test on one or more processor cores, and encodes results of the first test in an on-chip non-volatile memory. A second tester conducts a second test on the processor cores, and encodes results of the second test in an external non-volatile storage device. An override bit of a multiplexer is set if a processor core fails the second test. In response to the override bit, the multiplexer selects a physical-to-logical mapping of processor IDs according to one of: the encoded results in the memory device or the encoded results in the external storage device. On-chip logic configures the processor cores according to the selected physical-to-logical mapping.

  2. Safety-critical Java with cyclic executives on chip-multiprocessors

    DEFF Research Database (Denmark)

    Ravn, Anders P.; Schoeberl, Martin

    2012-01-01

    Chip-multiprocessors offer increased processing power at a low cost. However, in order to use them for real-time systems, tasks have to be scheduled efficiently and predictably. It is well known that finding optimal schedules is a computationally hard problem. In this paper we present a solution ...... for multiprocessors, we have implemented it in the context of safety-critical Java on a Java processor....

  3. Proposed Algorithm for Optimization of Job Scheduling in Multiprocessor Systems using Genetic Approach

    OpenAIRE

    Kirti Nagpal; Vaishali Wadhwa

    2012-01-01

    In multiprocessor systems, an efficient scheduling of a parallel program onto the processors that minimizes the entire execution time is important for achieving a high performance. Task scheduling is essential for the suitable operation of multiprocessor systems. The aim of task scheduling is to determine an assignment of tasks to processors for shortening the length of schedules. A task can be partitioned into a group of subtasks and represented as a DAG (Directed Acyclic Graph), so the prob...

  4. Pipelined multiprocessor system-on-chip for multimedia

    CERN Document Server

    Javaid, Haris

    2014-01-01

    This book describes analytical models and estimation methods to enhance performance estimation of pipelined multiprocessor systems-on-chip (MPSoCs).  A framework is introduced for both design-time and run-time optimizations. For design space exploration, several algorithms are presented to minimize the area footprint of a pipelined MPSoC under a latency or a throughput constraint.  A novel adaptive pipelined MPSoC architecture is described, where idle processors are transitioned into low-power states at run-time to reduce energy consumption. Multi-mode pipelined MPSoCs are introduced, where multiple pipelined MPSoCs optimized separately are merged into a single pipelined MPSoC, enabling further reduction of the area footprint by sharing the processors and communication buffers. Readers will benefit from the authors’ combined use of analytical models, estimation methods and exploration algorithms and will be enabled to explore billions of design points in a few minutes.   ·         Describes the ...

  5. Performance study of a clustered shared-memory multiprocessor

    Energy Technology Data Exchange (ETDEWEB)

    Naji, A.R.

    1988-01-01

    A shared-memory multiprocessor having clusters of processing elements and memory modules is proposed. Since the delay through a multistage interconnection network, which increases logarithmically, can be large when the number of processors is large, clustering helps reduce the average delay to access a memory module. Each cluster has two others as its neighbors. The clusters are interconnected in such a way that the memory modules of a cluster can also be accessed by the processors of the neighboring clusters besides its own processors via its interconnection network. The coupling between the clusters provides flexibility for the scheduling of tasks. The processors and memory modules of all clusters are also connected to a shared interconnection network allowing the processors to access memory modules of the nonneighboring clusters. A Markov-chain model is developed for the circuit-switching strategy, and queueing models are used for the packet-switching strategy. The circuit-switching model is extended to include synchronized memory accesses. Sharing of network ports by the processors is also considered. A scheduling algorithm is proposed to assign tasks from directed acyclic task graphs to processors using 0-1 integer programming and a lookahead technique.

  6. MULTIPROCESSOR AND DISTRIBUTED PROCESSING BIBLIOGRAPHIC DATA BASE SOFTWARE SYSTEM

    Science.gov (United States)

    Miya, E. N.

    1994-01-01

    Multiprocessors and distributed processing are undergoing increased scientific scrutiny for many reasons. It is more and more difficult to keep track of the existing research in these fields. This package consists of a large machine-readable bibliographic data base which, in addition to the usual keyword searches, can be used for producing citations, indexes, and cross-references. The data base is compiled from smaller existing multiprocessing bibliographies, and tables of contents from journals and significant conferences. There are approximately 4,000 entries covering topics such as parallel and vector processing, networks, supercomputers, fault-tolerant computers, and cellular automata. Each entry is represented by 21 fields including keywords, author, referencing book or journal title, volume and page number, and date and city of publication. The data base contains UNIX 'refer' formatted ASCII data and can be implemented on any computer running under the UNIX operating system. The data base requires approximately one megabyte of secondary storage. The documentation for this program is included with the distribution tape, although it can be purchased for the price below. This bibliography was compiled in 1985 and updated in 1988.

  7. Ordered fast fourier transforms on a massively parallel hypercube multiprocessor

    Science.gov (United States)

    Tong, Charles; Swarztrauber, Paul N.

    1989-01-01

    Design alternatives for ordered Fast Fourier Transformation (FFT) algorithms were examined on massively parallel hypercube multiprocessors such as the Connection Machine. Particular emphasis is placed on reducing communication which is known to dominate the overall computing time. To this end, the order and computational phases of the FFT were combined, and the sequence to processor maps that reduce communication were used. The class of ordered transforms is expanded to include any FFT in which the order of the transform is the same as that of the input sequence. Two such orderings are examined, namely, standard-order and A-order which can be implemented with equal ease on the Connection Machine where orderings are determined by geometries and priorities. If the sequence has N = 2 exp r elements and the hypercube has P = 2 exp d processors, then a standard-order FFT can be implemented with d + r/2 + 1 parallel transmissions. An A-order sequence can be transformed with 2d - r/2 parallel transmissions which is r - d + 1 fewer than the standard order. A parallel method for computing the trigonometric coefficients is presented that does not use trigonometric functions or interprocessor communication. A performance of 0.9 GFLOPS was obtained for an A-order transform on the Connection Machine.

  8. Hierarchical N-body methods on shared address space multiprocessors.

    Science.gov (United States)

    Holt, C.; Singh, J. P.

    The authors examine the parallelization issues in and architectural implications of the two dominant adaptive hierarchical N-body methods: the Barnes-Hut method and the Fast Multipole Method. They show that excellent parallel performance can be obtained on cache-coherent shared address space multiprocessors, by demonstrating performance on three cache-coherent machines: the Stanford DASH, the Kendall Square Research KSR-1, and the Silicon Graphics Challenge. Even on machines that have their main memory physically distributed among processing nodes and highly nonuniform memory access costs, the speedups are obtained without any attention to where memory is allocated on the machine. The authors show that the reason for good performance is the high degree of temporal locality afforded by the applications, and the fact that working sets are small (and scale slowly) so that caching shared data automatically in hardware exploits this locality very effectively. Even if data distribution in main memory is assumed to be free, it does not help very much. Finally, they address a potential bottleneck in scaling the parallelism to large machines, namely the fraction of time spent in building the tree used by hierarchical N-body methods.

  9. A Resource-Efficient Communication Architecture for Chip Multiprocessors on FPGAs

    Institute of Scientific and Technical Information of China (English)

    Xiaofang(Maggie)Wang; Swetha Thota

    2011-01-01

    Significant advances in field-programmable gate arrays (FPGAs) have made it viable to explore innovative multiprocessor solutions on a single FPGA chip. For multiprocessors, an efficient communication network that matches the needs of the target application is always critical to the overall performance. Wormhole packet-switching network-on-chip (NoC) solutions are replacing conventional shared buses to deal with scalability and complexity challenges coming along with the increasing number of processing elements (PEs). However, the quest for high performance networks has led to very complex and resource-expensive NoC designs, leaving little room for the real computing force, i.e., PEs. Moreover, many techniques offer very small performance gains or none at all when network traffic is light while increasing the resource usage of routers. We argue that computation is still the primary task of multiprocessors and sufficient resources should be reserved for PEs. This paper presents our novel design and implementation of a resource-efficient communication network for multiprocessors on FPGAs. We reduce not only the required number of touters for a given number of PEs by introducing a new PE-router topology, but also the resource requirement of each router. Our communication network relies on the NEWS channels to transfer packets in a pipelined fashion following the path determined by the routing network. The implementation results on various Xilinx FPCAs show good performance in the typical range of network load for multiprocessor applications.

  10. Performance analysis of dynamic load balancing algorithm for multiprocessor interconnection network

    Directory of Open Access Journals (Sweden)

    M.U. Bokhari

    2016-09-01

    Full Text Available Multiprocessor interconnection network have become powerful parallel computing system for real-time applications. Nowadays the many researchers posses studies on the dynamic load balancing in multiprocessor system. Load balancing is the method of dividing the total load among the processors of the distributed system to progress task's response time as well as resource utilization whereas ignoring a condition where few processors are overloaded or underloaded or moderately loaded. However, in dynamic load balancing algorithm presumes no priori information about behaviour of tasks or the global state of the system. There are numerous issues while designing an efficient dynamic load balancing algorithm that involves utilization of system, amount of information transferred among processors, selection of tasks for migration, load evaluation, comparison of load levels and many more. This paper enlightens the performance analysis on dynamic load balancing strategy (DLBS algorithm, used for hypercube network in multiprocessor system.

  11. Supporting Multiprocessors in the Icecap Safety-Critical Java Run-Time Environment

    DEFF Research Database (Denmark)

    Zhao, Shuai; Wellings, Andy; Korsholm, Stephan Erbs

    2015-01-01

    The current version of the Safety Critical Java (SCJ) specification defines three compliance levels. Level 0 targets single processor programs while Level 1 and 2 can support multiprocessor platforms. Level 1 programs must be fully partitioned but Level 2 programs can also be more globally...... scheduled. As of yet, there is no official Reference Implementation for SCJ. However, the icecap project has produced a Safety-Critical Java Run-time Environment based on the Hardware-near Virtual Machine (HVM). This supports SCJ at all compliance levels and provides an implementation of the safety......-critical Java (javax.safetycritical) package. This is still work-in-progress and lacks certain key features. Among these is the ability to support multiprocessor platforms. In this paper, we explore two possible options to adding multiprocessor support to this environment: the “green thread” and the “native...

  12. System-Level Design Methodologies for Networked Multiprocessor Systems-on-Chip

    DEFF Research Database (Denmark)

    Virk, Kashif Munir

    2008-01-01

    of wireless integrated sensor networks which are an emerging class of networked embedded computer systems. The work described here demonstrates how to model multiprocessor systems-on-chip at the system level by abstracting away most of the lower-level details albeit retaining the parameters most relevant......The first part of the thesis presents an overview of the existing theories and practices of modeling and simulation of multiprocessor systems-on-chip. The systematic categorization of the plethora of existing programming models at various levels of abstraction is the main contribution here which...... is the first such attempt in the published literature. The second part of the thesis deals with the issues related to the development of system-level design methodologies for networked multiprocessor systems-on-chip at various levels of design abstraction with special focus on the modeling and design...

  13. Assessing Programming Costs of Explicit Memory Localization on a Large Scale Shared Memory Multiprocessor

    Directory of Open Access Journals (Sweden)

    Silvio Picano

    1992-01-01

    Full Text Available We present detailed experimental work involving a commercially available large scale shared memory multiple instruction stream-multiple data stream (MIMD parallel computer having a software controlled cache coherence mechanism. To make effective use of such an architecture, the programmer is responsible for designing the program's structure to match the underlying multiprocessors capabilities. We describe the techniques used to exploit our multiprocessor (the BBN TC2000 on a network simulation program, showing the resulting performance gains and the associated programming costs. We show that an efficient implementation relies heavily on the user's ability to explicitly manage the memory system.

  14. Mapping of H.264 decoding on a multiprocessor architecture

    Science.gov (United States)

    van der Tol, Erik B.; Jaspers, Egbert G.; Gelderblom, Rob H.

    2003-05-01

    Due to the increasing significance of development costs in the competitive domain of high-volume consumer electronics, generic solutions are required to enable reuse of the design effort and to increase the potential market volume. As a result from this, Systems-on-Chip (SoCs) contain a growing amount of fully programmable media processing devices as opposed to application-specific systems, which offered the most attractive solutions due to a high performance density. The following motivates this trend. First, SoCs are increasingly dominated by their communication infrastructure and embedded memory, thereby making the cost of the functional units less significant. Moreover, the continuously growing design costs require generic solutions that can be applied over a broad product range. Hence, powerful programmable SoCs are becoming increasingly attractive. However, to enable power-efficient designs, that are also scalable over the advancing VLSI technology, parallelism should be fully exploited. Both task-level and instruction-level parallelism can be provided by means of e.g. a VLIW multiprocessor architecture. To provide the above-mentioned scalability, we propose to partition the data over the processors, instead of traditional functional partitioning. An advantage of this approach is the inherent locality of data, which is extremely important for communication-efficient software implementations. Consequently, a software implementation is discussed, enabling e.g. SD resolution H.264 decoding with a two-processor architecture, whereas High-Definition (HD) decoding can be achieved with an eight-processor system, executing the same software. Experimental results show that the data communication considerably reduces up to 65% directly improving the overall performance. Apart from considerable improvement in memory bandwidth, this novel concept of partitioning offers a natural approach for optimally balancing the load of all processors, thereby further improving the

  15. HepMC_Contrib:Persistent Interface Package for HepMC

    Institute of Scientific and Technical Information of China (English)

    TakayukiSAEKI; YouheiMORITA; 等

    2001-01-01

    A persistent interface package Hep MC_Contrib is developed for the C++ Monte Carlo event class library HepMC.HepMC_Contrib package provides an interface to user programs for storing /retrieving HepMC event records to/from Objectivity database,HepMC_Contrib is designed to utilise the standard features of HepODBMS as much as possible,Two types of implementation of class design were tested to reduce the size of the database,At last,the performance of the package is discussed in terms of the size of database.

  16. Silicon Sensors for HEP Experiments

    CERN Document Server

    Dierlamm, Alexander Hermann

    2017-01-01

    With increasing luminosity of accelerators for experiments in High Energy Physics the demands on the detectors increase as well. Especially tracking and vertexing detectors made of silicon sensors close to the interaction point need to be equipped with more radiation hard devices. This article introduces the different types of silicon sensors, describes measures to increase radiation hardness and provides an overview of present upgrade choices of HEP experiments.

  17. A reflection on Software Engineering in HEP

    Science.gov (United States)

    Carminati, Federico

    2012-12-01

    High Energy Physics (HEP) has been making very extensive usage of computers to achieve its research goals. Fairly large program suites have been developed, maintained and used over the years and it is fair to say that, overall, HEP has been successful in software development. Yet, HEP software development has not used classical Software Engineering techniques, which have been invented and refined to help the production of large programmes. In this paper we will review the development of HEP code with its strengths and weaknesses. Using several well-known HEP software projects as examples, we will try to demonstrate that our community has used a form of Software Engineering, albeit in an informal manner. The software development techniques employed in these projects are indeed very close in many aspects to the modern tendencies of Software Engineering itself, in particular the so-called “agile technologies”. The paper will conclude with an outlook on the future of software development in HEP.

  18. Multicore Processing and ARTEMIS - An incentive to develop the European Multiprocessor research

    DEFF Research Database (Denmark)

    Seceleanu, Tiberius; Tenhunen, Hannu; Jerraya, Ahmed

    2006-01-01

    Even though multiprocessor architectures have been developed for a long time now, the approach was mostly focusing on multi-chip realizations. Clustering computers or micro-processors on the same board was the solution to manage complex applications vs. performance requirements. It is only...

  19. SIFT - Multiprocessor architecture for Software Implemented Fault Tolerance flight control and avionics computers

    Science.gov (United States)

    Forman, P.; Moses, K.

    1979-01-01

    A brief description of a SIFT (Software Implemented Fault Tolerance) Flight Control Computer with emphasis on implementation is presented. A multiprocessor system that relies on software-implemented fault detection and reconfiguration algorithms is described. A high level reliability and fault tolerance is achieved by the replication of computing tasks among processing units.

  20. 3D-TV Rendering on a Multiprocessor System on a Chip

    NARCIS (Netherlands)

    Van Eijndhoven, J.T.J.; Li, X.

    2006-01-01

    This thesis focuses on the issue of mapping 3D-TV rendering applications to a multiprocessor platform. The target platform aims to address tomorrow's multi-media consumer market. The prototype chip, called Wasabi, contains a set of TriMedia processors that communicate viaa shared memory, fast messag

  1. On-Line Dependability Enhancement of Multiprocessor SoCs by Resource Management

    NARCIS (Netherlands)

    Braak, ter T.D.; Burgess, S.T.; Hurskainen, H.; Kerkhoff, H.G.; Vermeulen, B.; Zhang, Xiao

    2010-01-01

    This paper describes a new approach towards dependable design of homogeneous multi-processor SoCs in an example satellite-navigation application. First, the NoC dependability is functionally verified via embedded software. Then the Xentium processor tiles are periodically verified via on-line self-t

  2. Power-dissipation comparison of two dependability approaches for multi-processor systems

    NARCIS (Netherlands)

    Zhao, Yong; Zhang, Xiao; Kerkhoff, Hans G.; Zhao, Yong

    2013-01-01

    The additional power dissipation involved in introducing a high dependability in multi-processor systems is nowadays becoming a major concern (power-aware dependability). In this paper, the power dissipation components of a recently implemented scan-test based dependability testing approach for a mu

  3. Thermal-Aware Design and Runtime Management of 3D Stacked Multiprocessors

    NARCIS (Netherlands)

    Kumar, S.S.

    2015-01-01

    The sustained increase in computational performance demanded by next-generation applications drives the increasing core counts of modern multiprocessor systems. However, in the dark silicon era, the performance levels and integration density of such systems is limited by thermal constraints of their

  4. Fast multiprocessor scheduling with fixed task binding of large scale industrial cyber physical systems

    NARCIS (Netherlands)

    Adyanthaya, S.; Geilen, M.; Basten, T.; Schiffelers, R.; Theelen, B.; Voeten, J.

    2013-01-01

    Latest trends in embedded platform architectures show a steady shift from high frequency single core platforms to lower-frequency but highly-parallel execution platforms. Scheduling applications with stringent latency requirements on such multiprocessor platforms is challenging. Our work is motivate

  5. HAPI: An event-driven simulator for real-time multiprocessor systems

    NARCIS (Netherlands)

    Kurtin, Philip S.; Hausmans, Joost P.H.M.; Bekooij, Marco J.G.

    2016-01-01

    Many embedded multiprocessor systems have hard real-time requirements which should be guaranteed at design time by means of analytical techniques that cover all cases. It is desirable to evaluate the correctness and tightness of the analysis results by means of simulation. However, verification of t

  6. Parallelization of While Loops in Nested Loop Programs for Shared-Memory Multiprocessor Systems

    NARCIS (Netherlands)

    Geuns, Stefan J.; Bekooij, Marco J.G.; Bijlsma, Tjerk; Corporaal, Henk

    2011-01-01

    Many applications contain loops with an undetermined number of iterations. These loops have to be parallelized in order to increase the throughput when executed on an embedded multiprocessor platform. This paper presents a method to automatically extract a parallel task graph based on function level

  7. Fast multiprocessor scheduling with fixed task binding of large scale industrial cyber physical systems

    NARCIS (Netherlands)

    Adyanthaya, S.; Geilen, M.; Basten, T.; Schiffelers, R.; Theelen, B.; Voeten, J.

    2013-01-01

    Latest trends in embedded platform architectures show a steady shift from high frequency single core platforms to lower-frequency but highly-parallel execution platforms. Scheduling applications with stringent latency requirements on such multiprocessor platforms is challenging. Our work is motivate

  8. Thermal-Aware Design and Runtime Management of 3D Stacked Multiprocessors

    NARCIS (Netherlands)

    Kumar, S.S.

    2015-01-01

    The sustained increase in computational performance demanded by next-generation applications drives the increasing core counts of modern multiprocessor systems. However, in the dark silicon era, the performance levels and integration density of such systems is limited by thermal constraints of their

  9. Safety-critical Java with cyclic executives on chip-multiprocessors

    DEFF Research Database (Denmark)

    Ravn, Anders P.; Schoeberl, Martin

    2012-01-01

    Chip-multiprocessors offer increased processing power at a low cost. However, in order to use them for real-time systems, tasks have to be scheduled efficiently and predictably. It is well known that finding optimal schedules is a computationally hard problem. In this paper we present a solution...

  10. A system-level multiprocessor system-on-chip modeling framework

    DEFF Research Database (Denmark)

    Virk, Kashif Munir; Madsen, Jan

    2004-01-01

    We present a system-level modeling framework to model system-on-chips (SoC) consisting of heterogeneous multiprocessors and network-on-chip communication structures in order to enable the developers of today's SoC designs to take advantage of the flexibility and scalability of network-on-chip...

  11. Communication between Nested Loop Programs via Circular Buffers in an Embedded Multiprocessor System

    NARCIS (Netherlands)

    Bijlsma, Tjerk; Bekooij, Marco; Jansen, Pierre; Smit, Gerard; Falk, H.

    2008-01-01

    Multimedia applications, executed by embedded multiprocessor systems, can in some cases be represented as task graphs, with the tasks containing nested loop programs. The nested loop programs communicate via arrays and can be executed on different processors. Typically an array can be communicated v

  12. Evaluation of the impact chip multiprocessors have on SNL application performance.

    Energy Technology Data Exchange (ETDEWEB)

    Doerfler, Douglas W.

    2009-10-01

    This report describes trans-organizational efforts to investigate the impact of chip multiprocessors (CMPs) on the performance of important Sandia application codes. The impact of CMPs on the performance and applicability of Sandia's system software was also investigated. The goal of the investigation was to make algorithmic and architectural recommendations for next generation platform acquisitions.

  13. A distributed multiprocessor system designed for real-time image processing

    Science.gov (United States)

    Yin, Zhiyi; Heng, Wei

    2008-11-01

    In real-time image processing, a large amount of data is needed to be processed at a very high speed. Considering the problems faced in real-time image processing, a distributed multiprocessor system is proposed in this paper. In the design of the distributed multiprocessor system, processing tasks are allocated to various processes, which are bound to different CPUs. Several designs are discussed, and making full use of every process is very important to system's excellent performance. Furthermore, the problems of realization fasten on the inter-process communication, the synchronization, and the stability. System analysis and performance tests both show that the distributed multiprocessor system is able to improve system's performance variously, including the delay, the throughput rate, the stability, the scalability. And the system can be expanded easy at aspects of software and hardware. In a word, the distributed multiprocessor system designed for real-time image processing, based on distributed algorithms, not only improves system's performance variously, but also costs low and expands easy.

  14. Preparing HEP software for concurrency

    Science.gov (United States)

    Clemencic, M.; Hegner, B.; Mato, P.; Piparo, D.

    2014-06-01

    The necessity for thread-safe experiment software has recently become very evident, largely driven by the evolution of CPU architectures towards exploiting increasing levels of parallelism. For high-energy physics this represents a real paradigm shift, as concurrent programming was previously only limited to special, well-defined domains like control software or software framework internals. This paradigm shift, however, falls into the middle of the successful LHC programme and many million lines of code have already been written without the need for parallel execution in mind. In this paper we have a closer look at the offline processing applications of the LHC experiments and their readiness for the many-core era. We review how previous design choices impact the move to concurrent programming. We present our findings on transforming parts of the LHC experiment reconstruction software to thread-safe code, and the main design patterns that have emerged during the process. A plethora of parallel-programming patterns are well known outside the HEP community, but only a few have turned out to be straightforward enough to be suited for non-expert physics programmers. Finally, we propose a potential strategy for the migration of existing HEP experiment software to the many-core era.

  15. Supporting Multiprocessors in the Icecap Safety-Critical Java Run-Time Environment

    DEFF Research Database (Denmark)

    Zhao, Shuai; Wellings, Andy; Korsholm, Stephan Erbs

    2015-01-01

    scheduled. As of yet, there is no official Reference Implementation for SCJ. However, the icecap project has produced a Safety-Critical Java Run-time Environment based on the Hardware-near Virtual Machine (HVM). This supports SCJ at all compliance levels and provides an implementation of the safety......-critical Java (javax.safetycritical) package. This is still work-in-progress and lacks certain key features. Among these is the ability to support multiprocessor platforms. In this paper, we explore two possible options to adding multiprocessor support to this environment: the “green thread” and the “native...... thread” approaches. The “native thread” approach is adopted and the design and implementation of a revised icecap SCJ run-time environment is discussed....

  16. A heterogeneous multiprocessor architecture for low-power audio signal processing applications

    DEFF Research Database (Denmark)

    Paker, Ozgun; Sparsø, Jens; Haandbæk, Niels

    2001-01-01

    This paper describes a low-power programmable DSP architecture that targets audio signal processing. The architecture can be characterized as a heterogeneous multiprocessor consisting of small and simple instruction set processors called mini-cores that communicate using message passing. The proc......This paper describes a low-power programmable DSP architecture that targets audio signal processing. The architecture can be characterized as a heterogeneous multiprocessor consisting of small and simple instruction set processors called mini-cores that communicate using message passing....... Early results obtained from the design of a prototype chip containing filter processors for a hearing aid application, indicate a power consumption that is an order of magnitude better than current state of the art low-power audio DSPs implemented using full-custom techniques. This is due to: (1...

  17. Multicore Processing and ARTEMIS - An incentive to develop the European Multiprocessor research

    DEFF Research Database (Denmark)

    Seceleanu, Tiberius; Tenhunen, Hannu; Jerraya, Ahmed

    2006-01-01

    Even though multiprocessor architectures have been developed for a long time now, the approach was mostly focusing on multi-chip realizations. Clustering computers or micro-processors on the same board was the solution to manage complex applications vs. performance requirements. It is only...... in the recent period that technological advances allow for a change of this paradigm towards on-chip distributed platforms, or multi-core, or multi processor system-on-chip (MPSOC). A multiprocessor architecture may be defined as: onchip clusters of heterogeneous functionality modules, cooperating...... to a traditional SOC view, concurrency at all levels plays a deterministic role, while problems such as power consumption, addressable separately in the nodes of a DS, must be unitary considered. Thus, distinct research and development issues must be defined for MPSOC, building on the indispensable experience...

  18. Energy-Aware Real-Time Task Scheduling for Heterogeneous Multiprocessors with Particle Swarm Optimization Algorithm

    Directory of Open Access Journals (Sweden)

    Weizhe Zhang

    2014-01-01

    Full Text Available Energy consumption in computer systems has become a more and more important issue. High energy consumption has already damaged the environment to some extent, especially in heterogeneous multiprocessors. In this paper, we first formulate and describe the energy-aware real-time task scheduling problem in heterogeneous multiprocessors. Then we propose a particle swarm optimization (PSO based algorithm, which can successfully reduce the energy cost and the time for searching feasible solutions. Experimental results show that the PSO-based energy-aware metaheuristic uses 40%–50% less energy than the GA-based and SFLA-based algorithms and spends 10% less time than the SFLA-based algorithm in finding the solutions. Besides, it can also find 19% more feasible solutions than the SFLA-based algorithm.

  19. High Performance Scheduling in Parallel Heterogeneous Multiprocessor Systems Using Evolutionary Algorithms

    Directory of Open Access Journals (Sweden)

    Mohammad Sadeq Garshasbi

    2013-10-01

    Full Text Available Scheduling is the process of improving the performance of a parallel and distributed system. Parallel systems are part of distributed systems. Parallel systems refers to the concept of run parallel jobs that can be run simultaneously on several processors. Load balancing and scheduling are very important and complex problems in multiprocessor systems. So that problems are an NP-Complete problems. In this paper, we introduce a method based on genetic algorithms for scheduling and laod balancing in parallel heterogeneous multi-processor systems. The results of the simulations indicate Genetic algorithm for scheduling at in systems is better than LPT, SPT and FIFO. Simualation results indicate Genetic Algorithm reduce total response time and also it increase utilization.

  20. Application of some graph invariants to the analysis of multiprocessor interconnection networks

    Directory of Open Access Journals (Sweden)

    Cvetković Dragoš

    2008-01-01

    Full Text Available Let G be a graph with diameter D, maximum vertex degree Δ, the largest eigenvalue λ1 and m distinct eigenvalues. The products mΔ and (D+1 λ1 are called the tightness of G of the first and second type, respectively. In the recent literature it was suggested that graphs with a small tightness of the first type are good models for the multiprocessor interconnection networks. We study these and some other types of tightness and some related graph invariants and demonstrate their usefulness in the analysis of multiprocessor interconnection networks. Tightness values for graphs of some standard interconnection networks are determined. We also present some facts showing that the tightness of the second type is a relevant graph invariant. We prove that the number of connected graphs with a bounded tightness is finite.

  1. A Complete Multi-Processor System-on-Chip FPGA-Based Emulation Framework

    OpenAIRE

    Valle, Del; Pablo, G.; Atienza, David; Magan, Ivan; Flores, Javier G.; Perez, Esther A.; Mendias, Jose M.; Benini, Luca; De Micheli, Giovanni

    2006-01-01

    With the growing complexity in consumer embedded products and the improvements in process technology, Multi-Processor System-On-Chip (MPSoC) architectures have become widespread. These new systems are very complex to design as they must execute multiple complex real-time applications (e.g. video processing, or videogames), while meeting several additional design constraints (e.g. energy consumption or time-to-market). Therefore, mechanisms to efficiently explore the different possible HW-SW d...

  2. Detailed design of the kernel of a real-time multiprocessor operating system.

    OpenAIRE

    Wasson, Warren James

    1980-01-01

    This thesis describes the detailed design of a distributed operating system for a real-time, microcomputer based multiprocessor system. Process structuring and segmented address spaces comprise the central concepts around which this system is built. The system particularly supports applications where processing is partitioned into a set of multiple processes. One such area is that of digital signal processing for which this system has been specifically developed. The operating system is hiera...

  3. Method for wiring allocation and switch configuration in a multiprocessor environment

    Science.gov (United States)

    Aridor, Yariv; Domany, Tamar; Frachtenberg, Eitan; Gal, Yoav; Shmueli, Edi; Stockmeyer, legal representative, Robert E.; Stockmeyer, Larry Joseph

    2008-07-15

    A method for wiring allocation and switch configuration in a multiprocessor computer, the method including employing depth-first tree traversal to determine a plurality of paths among a plurality of processing elements allocated to a job along a plurality of switches and wires in a plurality of D-lines, and selecting one of the paths in accordance with at least one selection criterion.

  4. Communication and Memory Architecture Design of Application-Specific High-End Multiprocessors

    Directory of Open Access Journals (Sweden)

    Yahya Jan

    2012-01-01

    Full Text Available This paper is devoted to the design of communication and memory architectures of massively parallel hardware multiprocessors necessary for the implementation of highly demanding applications. We demonstrated that for the massively parallel hardware multiprocessors the traditionally used flat communication architectures and multi-port memories do not scale well, and the memory and communication network influence on both the throughput and circuit area dominates the processors influence. To resolve the problems and ensure scalability, we proposed to design highly optimized application-specific hierarchical and/or partitioned communication and memory architectures through exploring and exploiting the regularity and hierarchy of the actual data flows of a given application. Furthermore, we proposed some data distribution and related data mapping schemes in the shared (global partitioned memories with the aim to eliminate the memory access conflicts, as well as, to ensure that our communication design strategies will be applicable. We incorporated these architecture synthesis strategies into our quality-driven model-based multi-processor design method and related automated architecture exploration framework. Using this framework, we performed a large series of experiments that demonstrate many various important features of the synthesized memory and communication architectures. They also demonstrate that our method and related framework are able to efficiently synthesize well scalable memory and communication architectures even for the high-end multiprocessors. The gains as high as 12-times in performance and 25-times in area can be obtained when using the hierarchical communication networks instead of the flat networks. However, for the high parallelism levels only the partitioned approach ensures the scalability in performance.

  5. Utilizing Predictors for Efficient Thermal Management in Multiprocessor SoCs

    Science.gov (United States)

    2009-10-01

    IEEE Authorized licensed use limited to: Univ of Calif San Diego. Downloaded on October 12, 2009 at 08:29 from IEEE Xplore . Restrictions apply...from IEEE Xplore . Restrictions apply. COŞKUN et al.: UTILIZING PREDICTORS FOR EFFICIENT THERMAL MANAGEMENT IN MULTIPROCESSOR SoCs 1505 values in...dependent on the power Authorized licensed use limited to: Univ of Calif San Diego. Downloaded on October 12, 2009 at 08:29 from IEEE Xplore . Restrictions

  6. TSP:A Heterogeneous Multiprocessor Supercomputing System Based on i860XP

    Institute of Scientific and Technical Information of China (English)

    黄国勇; 李三立

    1994-01-01

    Numerous new RISC processors provide support for supercomputing.By using the “mini-Cray” i860 superscalar processor,an add-on board has been developed to boost the performance of a real time system.A parallel heterogeneous multiprocessor surercomputing system,TSP,is constructed.In this paper,we present the system design consideration and described the architecture of the TSP and its features.

  7. A Method to Evaluate the Performance of a Multiprocessor Machine based on Data Flow Principles

    OpenAIRE

    1989-01-01

    In this paper we present a method to model a static data pow oriented multiprocessor system. This methodology of modelling can be used to examine the machine behaviour for executing a program according to three scheduling strategies, viz., static, dynamic and quasi-dynamic policies. The processing elements (PEs) of the machine go through different states in order to complete tasks they are allotted. Hence, the time taken by the machine to execute a program is directly dependent on the tim...

  8. Resource Allocation Model for Modelling Abstract RTOS on Multiprocessor System-on-Chip

    DEFF Research Database (Denmark)

    Virk, Kashif Munir; Madsen, Jan

    2003-01-01

    Resource Allocation is an important problem in RTOS's, and has been an active area of research. Numerous approaches have been developed and many different techniques have been combined for a wide range of applications. In this paper, we address the problem of resource allocation in the context of...... of modelling an abstract RTOS on multiprocessor SoC platforms. We discuss the implementation details of a simplified basic priority inheritance protocol for our abstract system model in SystemC....

  9. Dynamic power management for UML modeled applications on multiprocessor SoC

    Science.gov (United States)

    Kukkala, Petri; Arpinen, Tero; Setälä, Mikko; Hännikäinen, Marko; Hämäläinen, Timo D.

    2007-02-01

    The paper presents a novel scheme of dynamic power management for UML modeled applications that are executed on a multiprocessor System-on-Chip (SoC) in a distributed manner. The UML models for both application and architecture are designed according to a well-defined UML profile for embedded system design, called TUT-Profile. Application processes are considered as elementary units of distributed execution, and their mapping on a multiprocessor SoC can be dynamically changed at run-time. Our approach on the dynamic power management balances utilized processor resources against current workload at runtime by (1) observing the processor and workload statistics, (2) re-evaluating the amount of required resources (i.e. the number of active processors), and (3) re-mapping the application processes to the minimum set of active processors. The inactive processors are set to a power-save state by using clock-gating. The approach integrates the well-known power management techniques tightly with the UML based design of embedded systems in a novel way. We evaluated the dynamic power management with a WLAN terminal implemented on a multiprocessor SoC on Altera Stratix II FPGA containing up to five Nios II processors and dedicated hardware accelerators. Measurements proved up to 21% savings in the power consumption of the whole FPGA board.

  10. Maximizing run time performance of deployed data flow graphs on a multiprocessor architecture

    Science.gov (United States)

    Tobias, Richard J.; Hunt, Peter D.

    1993-10-01

    This paper discusses a practical solution for supporting the deployment of data flow graphs onto the Loral/Rolm Computer Systems, Inc. vector processing multi-processor architecture. It outlines the support software (both workstation hosted and target system hosted) that is required to design, debug, and maximize deployed data flow graph performance on the multiprocessor architecture. The deployment process guarantees real-time deadlines, minimizes run time scheduling overhead, and minimizes designer partitioning input. It is known that determining effective run time data flow graph node schedules for multi-processor architectures is an NP-complete class of problem not well suited to real-time systems. Loral/Rolm Computer Systems, Inc.'s vector processing toolset recognizes this problem and this paper discusses a prescheduling and pre-assignment approach for partitioning data flow graphs to available hardware resources. In particular the toolset components (which are based upon an enhanced data flow graph language) of workstation pre-assignment, prescheduling, run time gross allocation and local compute element dispatching are discussed in detail.

  11. Operating system for a real-time multiprocessor propulsion system simulator

    Science.gov (United States)

    Cole, G. L.

    1984-01-01

    The success of the Real Time Multiprocessor Operating System (RTMPOS) in the development and evaluation of experimental hardware and software systems for real time interactive simulation of air breathing propulsion systems was evaluated. The Real Time Multiprocessor Operating System (RTMPOS) provides the user with a versatile, interactive means for loading, running, debugging and obtaining results from a multiprocessor based simulator. A front end processor (FEP) serves as the simulator controller and interface between the user and the simulator. These functions are facilitated by the RTMPOS which resides on the FEP. The RTMPOS acts in conjunction with the FEP's manufacturer supplied disk operating system that provides typical utilities like an assembler, linkage editor, text editor, file handling services, etc. Once a simulation is formulated, the RTMPOS provides for engineering level, run time operations such as loading, modifying and specifying computation flow of programs, simulator mode control, data handling and run time monitoring. Run time monitoring is a powerful feature of RTMPOS that allows the user to record all actions taken during a simulation session and to receive advisories from the simulator via the FEP. The RTMPOS is programmed mainly in PASCAL along with some assembly language routines. The RTMPOS software is easily modified to be applicable to hardware from different manufacturers.

  12. Exact Feasibility Tests for Real-Time Scheduling of Periodic Tasks upon Multiprocessor Platforms

    CERN Document Server

    Cucu, Liliana

    2008-01-01

    In this paper we study the global scheduling of periodic task systems upon multiprocessor platforms. We first show two very general properties which are well-known for uniprocessor platforms and which remain for multiprocessor platforms: (i) under few and not so restrictive assumptions, we show that feasible schedules of periodic task systems are periodic from some point with a period equal to the least common multiple of task periods and (ii) for the specific case of synchronous periodic task systems, we show that feasible schedules repeat from the origin. We then present our main result: we characterize, for task-level fixed-priority schedulers and for asynchronous constrained or arbitrary deadline periodic task models, upper bounds of the first time instant where the schedule repeats. We show that job-level fixed-priority schedulers are predictable upon unrelated multiprocessor platforms. For task-level fixed-priority schedulers, based on the upper bounds and the predictability property, we provide for asy...

  13. A modern approach to HEP visualization - ATLASrift

    CERN Document Server

    Vukotic, Ilija; The ATLAS collaboration

    2017-01-01

    At the times when HEP computing needs were mainly fulfilled by mainframes, graphics solutions for event and detector visualizations were necessarily hardware as well as experiment specific and impossible to use anywhere outside of HEP community. A big move to commodity computing did not precipitate a corresponding move of graphics solutions to industry standard hardware and software. In this paper, we list functionalities expected from contemporary tools and describe their implementation by a specific application: ATLASrift. We start with a basic premise that HEP visualization tools should be open in practice and not only in intentions. This means that a user should not be limited to specific and little used platforms, HEP-only software packages, or experiment-specific libraries. Equally important is that no special knowledge or special access rights are needed. Using industry standard frameworks brings not only sustainability, but also good support, a lot of community contributed tools, and a possibility of ...

  14. Data management in HEP: An approach

    CERN Document Server

    Furano, F

    2011-01-01

    In this work we describe an approach to data access and data management in High Energy Physics (HEP), which privileges performance, simplicity and scalability, in storage systems that co-operate. We also show why the typical HEP workload is well positioned to access geographically distributed data repositories and then weigh the advantages and disadvantages of accessing data across the Wide Area Network. We discuss some points related to the architecture that a data access/management system should have in order to exploit these possibilities. Currently, this kind of methods were explored by using the xrootd/Scalla software suite, that is a workable example of a distributed non-transactional data repository for the HEP environment. The Scalla architecture naturally allows us to build globally federated repositories congruent with diverse HEP collaborations and their data access needs. These methodologies, however, are based on the concept of caching associated to a performant messaging system and to an efficie...

  15. Hydrological Ensemble Prediction System (HEPS)

    Science.gov (United States)

    Thielen-Del Pozo, J.; Schaake, J.; Martin, E.; Pailleux, J.; Pappenberger, F.

    2010-09-01

    Flood forecasting systems form a key part of ‘preparedness' strategies for disastrous floods and provide hydrological services, civil protection authorities and the public with information of upcoming events. Provided the warning leadtime is sufficiently long, adequate preparatory actions can be taken to efficiently reduce the impacts of the flooding. Following on the success of the use of ensembles for weather forecasting, the hydrological community now moves increasingly towards Hydrological Ensemble Prediction Systems (HEPS) for improved flood forecasting using operationally available NWP products as inputs. However, these products are often generated on relatively coarse scales compared to hydrologically relevant basin units and suffer systematic biases that may have considerable impact when passed through the non-linear hydrological filters. Therefore, a better understanding on how best to produce, communicate and use hydrologic ensemble forecasts in hydrological short-, medium- und long term prediction of hydrological processes is necessary. The "Hydrologic Ensemble Prediction Experiment" (HEPEX), is an international initiative consisting of hydrologists, meteorologist and end-users to advance probabilistic hydrologic forecast techniques for flood, drought and water management applications. Different aspects of the hydrological ensemble processor are being addressed including • Production of useful meteorological products relevant for hydrological applications, ranging from nowcasting products to seasonal forecasts. The importance of hindcasts that are consistent with the operational weather forecasts will be discussed to support bias correction and downscaling, statistically meaningful verification of HEPS, and the development and testing of operating rules; • Need for downscaling and post-processing of weather ensembles to reduce bias before entering hydrological applications; • Hydrological model and parameter uncertainty and how to correct and

  16. HEP.TrkX [Vidyo

    CERN Document Server

    CERN. Geneva

    2017-01-01

    Reconstruction of charged particle tracks is a central task in the processing of physics data at the LHC and other colliders. Current state-of-the-art tracking algorithms are based on the Kalman filter and have seen great success both offline and at trigger level. However, these algorithms scale poorly with increasing detector occupancy, and it is foreseen that significant changes will be needed to achieve efficient track reconstruction in very high luminosity conditions. The HEP.TrkX pilot project aims to develop and explore machine-learning-based algorithms for particle tracking, with the goal of identifying candidate techniques for a more scalable tracking algorithm. In this talk we will discuss the techniques explored in the project so far, with emphasis on algorithms based on recurrent and convolutional neural networks. We will demonstrate the performance of these algorithms on toy detector data, and discuss plans to adapt them into complete algorithms for seed-finding and/or full track reconstructio...

  17. DiFX: A software correlator for very long baseline interferometry using multi-processor computing environments

    CERN Document Server

    Deller, A T; Bailes, M; West, C

    2007-01-01

    We describe the development of an FX style correlator for Very Long Baseline Interferometry (VLBI), implemented in software and intended to run in multi-processor computing environments, such as large clusters of commodity machines (Beowulf clusters) or computers specifically designed for high performance computing, such as multi-processor shared-memory machines. We outline the scientific and practical benefits for VLBI correlation, these chiefly being due to the inherent flexibility of software and the fact that the highly parallel and scalable nature of the correlation task is well suited to a multi-processor computing environment. We suggest scientific applications where such an approach to VLBI correlation is most suited and will give the best returns. We report detailed results from the Distributed FX (DiFX) software correlator, running on the Swinburne supercomputer (a Beowulf cluster of approximately 300 commodity processors), including measures of the performance of the system. For example, to correla...

  18. DiFX: A Software Correlator for Very Long Baseline Interferometry Using Multiprocessor Computing Environments

    Science.gov (United States)

    Deller, A. T.; Tingay, S. J.; Bailes, M.; West, C.

    2007-03-01

    We describe the development of an FX-style correlator for very long baseline interferometry (VLBI), implemented in software and intended to run in multiprocessor computing environments, such as large clusters of commodity machines (Beowulf clusters) or computers specifically designed for high-performance computing, such as multiprocessor shared-memory machines. We outline the scientific and practical benefits for VLBI correlation, these chiefly being due to the inherent flexibility of software and the fact that the highly parallel and scalable nature of the correlation task is well suited to a multiprocessor computing environment. We suggest scientific applications where such an approach to VLBI correlation is most suited and will give the best returns. We report detailed results from the Distributed FX (DiFX) software correlator running on the Swinburne supercomputer (a Beowulf cluster of ~300 commodity processors), including measures of the performance of the system. For example, to correlate all Stokes products for a 10 antenna array with an aggregate bandwidth of 64 MHz per station, and using typical time and frequency resolution, currently requires an order of 100 desktop-class compute nodes. Due to the effect of Moore's law on commodity computing performance, the total number and cost of compute nodes required to meet a given correlation task continues to decrease rapidly with time. We show detailed comparisons between DiFX and two existing hardware-based correlators: the Australian Long Baseline Array S2 correlator and the NRAO Very Long Baseline Array correlator. In both cases, excellent agreement was found between the correlators. Finally, we describe plans for the future operation of DiFX on the Swinburne supercomputer for both astrophysical and geodetic science.

  19. Multi-objective two-stage multiprocessor flow shop scheduling - a subgroup particle swarm optimisation approach

    Science.gov (United States)

    Huang, Rong-Hwa; Yang, Chang-Lin; Hsu, Chun-Ting

    2015-12-01

    Flow shop production system - compared to other economically important production systems - is popular in real manufacturing environments. This study focuses on the flow shop with multiprocessor scheduling problem (FSMP), and develops an improved particle swarm optimisation heuristic to solve it. Additionally, this study designs an integer programming model to perform effectiveness and robustness testing on the proposed heuristic. Experimental results demonstrate a 10% to 50% improvement in the effectiveness of the proposed heuristic in small-scale problem tests, and a 10% to 40% improvement in the robustness of the heuristic in large-scale problem tests, indicating extremely satisfactory performance.

  20. Generation-based memory synchronization in a multiprocessor system with weakly consistent memory accesses

    Science.gov (United States)

    Ohmacht, Martin

    2014-09-09

    In a multiprocessor system, a central memory synchronization module coordinates memory synchronization requests responsive to memory access requests in flight, a generation counter, and a reclaim pointer. The central module communicates via point-to-point communication. The module includes a global OR reduce tree for each memory access requesting device, for detecting memory access requests in flight. An interface unit is implemented associated with each processor requesting synchronization. The interface unit includes multiple generation completion detectors. The generation count and reclaim pointer do not pass one another.

  1. Generation-based memory synchronization in a multiprocessor system with weakly consistent memory accesses

    Energy Technology Data Exchange (ETDEWEB)

    Ohmacht, Martin

    2017-08-15

    In a multiprocessor system, a central memory synchronization module coordinates memory synchronization requests responsive to memory access requests in flight, a generation counter, and a reclaim pointer. The central module communicates via point-to-point communication. The module includes a global OR reduce tree for each memory access requesting device, for detecting memory access requests in flight. An interface unit is implemented associated with each processor requesting synchronization. The interface unit includes multiple generation completion detectors. The generation count and reclaim pointer do not pass one another.

  2. A high speed multi-tasking, multi-processor telemetry system

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Kung Chris [Univ. of Texas, El Paso, TX (United States)

    1996-12-31

    This paper describes a small size, light weight, multitasking, multiprocessor telemetry system capable of collecting 32 channels of differential signals at a sampling rate of 6.25 kHz per channel. The system is designed to collect data from remote wind turbine research sites and transfer the data via wireless communication. A description of operational theory, hardware components, and itemized cost is provided. Synchronization with other data acquisition systems and test data on data transmission rates is also given. 11 refs., 7 figs., 4 tabs.

  3. ASCR/HEP Exascale Requirements Review Report

    CERN Document Server

    Habib, Salman; Gerber, Richard; Antypas, Katie; Riley, Katherine; Williams, Tim; Wells, Jack; Straatsma, Tjerk; Almgren, A; Amundson, J; Bailey, S; Bard, D; Bloom, K; Bockelman, B; Borgland, A; Borrill, J; Boughezal, R; Brower, R; Cowan, B; Finkel, H; Frontiere, N; Fuess, S; Ge, L; Gnedin, N; Gottlieb, S; Gutsche, O; Han, T; Heitmann, K; Hoeche, S; Ko, K; Kononenko, O; LeCompte, T; Li, Z; Lukic, Z; Mori, W; Nugent, P; Ng, C -K; Oleynik, G; O'Shea, B; Padmanabhan, N; Petravick, D; Petriello, F J; Power, J; Qiang, J; Reina, L; Rizzo, T J; Ryne, R; Schram, M; Spentzouris, P; Toussaint, D; Vay, J -L; Viren, B; Wurthwein, F; Xiao, L

    2016-01-01

    This draft report summarizes and details the findings, results, and recommendations derived from the ASCR/HEP Exascale Requirements Review meeting held in June, 2015. The main conclusions are as follows. 1) Larger, more capable computing and data facilities are needed to support HEP science goals in all three frontiers: Energy, Intensity, and Cosmic. The expected scale of the demand at the 2025 timescale is at least two orders of magnitude -- and in some cases greater -- than that available currently. 2) The growth rate of data produced by simulations is overwhelming the current ability, of both facilities and researchers, to store and analyze it. Additional resources and new techniques for data analysis are urgently needed. 3) Data rates and volumes from HEP experimental facilities are also straining the ability to store and analyze large and complex data volumes. Appropriately configured leadership-class facilities can play a transformational role in enabling scientific discovery from these datasets. 4) A c...

  4. DD4hep Based Event Reconstruction

    CERN Document Server

    AUTHOR|(SzGeCERN)683529; Frank, Markus; Gaede, Frank-Dieter; Hynds, Daniel; Lu, Shaojun; Nikiforou, Nikiforos; Petric, Marko; Simoniello, Rosa; Voutsinas, Georgios Gerasimos

    The DD4HEP detector description toolkit offers a flexible and easy-to-use solution for the consistent and complete description of particle physics detectors in a single system. The sub-component DDREC provides a dedicated interface to the detector geometry as needed for event reconstruction. With DDREC there is no need to define an additional, separate reconstruction geometry as is often done in HEP, but one can transparently extend the existing detailed simulation model to be also used for the reconstruction. Based on the extension mechanism of DD4HEP, DDREC allows one to attach user defined data structures to detector elements at all levels of the geometry hierarchy. These data structures define a high level view onto the detectors describing their physical properties, such as measurement layers, point resolutions, and cell sizes. For the purpose of charged particle track reconstruction, dedicated surface objects can be attached to every volume in the detector geometry. These surfaces provide the measuremen...

  5. DD4hep Based Event Reconstruction

    CERN Document Server

    Sailer, Andre; Gaede, Frank-Dieter; Hynds, Daniel; Lu, Shaojun; Nikiforou, Nikiforos; Petric, Marko; Simoniello, Rosa; Voutsinas, Georgios Gerasimos

    The DD4HEP detector description toolkit offers a flexible and easy-to-use solution for the consistent and complete description of particle physics detectors in a single system. The sub-component DDREC provides a dedicated interface to the detector geometry as needed for event reconstruction. With DDREC there is no need to define an additional, separate reconstruction geometry as is often done in HEP, but one can transparently extend the existing detailed simulation model to be also used for the reconstruction. Based on the extension mechanism of DD4HEP, DDREC allows one to attach user defined data structures to detector elements at all levels of the geometry hierarchy. These data structures define a high level view onto the detectors describing their physical properties, such as measurement layers, point resolutions, and cell sizes. For the purpose of charged particle track reconstruction, dedicated surface objects can be attached to every volume in the detector geometry. These surfaces provide the measuremen...

  6. HEp-2 Cell Classification via Fusing Texture and Shape Information

    OpenAIRE

    Qi, Xianbiao; Zhao, Guoying; Li, Chun-Guang; Guo, Jun; Pietikäinen, Matti

    2015-01-01

    Indirect Immunofluorescence (IIF) HEp-2 cell image is an effective evidence for diagnosis of autoimmune diseases. Recently computer-aided diagnosis of autoimmune diseases by IIF HEp-2 cell classification has attracted great attention. However the HEp-2 cell classification task is quite challenging due to large intra-class variation and small between-class variation. In this paper we propose an effective and efficient approach for the automatic classification of IIF HEp-2 cell image by fusing ...

  7. Optimizing tridiagonal solvers for alternating direction methods on Boolean cube multiprocessors

    Energy Technology Data Exchange (ETDEWEB)

    Ho, C.T. (IBM Almaden Research Center, San Jose, CA (US)); Johnsson, S.L. (Dept. of Computer Science and Electrical Engineering, Yale Univ., New Haven, CT (US))

    1990-05-01

    Sets of tridiagonal systems occur in many applications. Fast Poisson solvers and Alternate Direction Methods make use of tridiagonal system solvers. Network-based multiprocessors provide a cost-effective alternative to traditional supercomputer architectures. The complexity of concurrent algorithms for the solution of multiple tridiagonal systems on Boolean-cube-configured multiprocessors with distributed memory are investigated. Variations of odd-even cyclic reduction, parallel cyclic reduction, and algorithms making use of data transposition with or without substructuring and local elimination, or pipelined elimination, are considered. A simple performance model is used for algorithm comparison, and the validity of the model is verified on an Intel iPSC/1. For many combinations of machine and system parameters, pipelined elimination, or equation transposition with or without substructuring is optimum. Hybrid algorithms that at any stage choose the best algorithm among the considered ones for the remainder of the problem are presented. It is shown that the optimum partitioning of a set of independent tridiagonal systems among a set of processors yields the embarrassingly parallel case.

  8. Solution of large nonlinear quasistatic structural mechanics problems on distributed-memory multiprocessor computers

    Energy Technology Data Exchange (ETDEWEB)

    Blanford, M. [Sandia National Labs., Albuquerque, NM (United States)

    1997-12-31

    Most commercially-available quasistatic finite element programs assemble element stiffnesses into a global stiffness matrix, then use a direct linear equation solver to obtain nodal displacements. However, for large problems (greater than a few hundred thousand degrees of freedom), the memory size and computation time required for this approach becomes prohibitive. Moreover, direct solution does not lend itself to the parallel processing needed for today`s multiprocessor systems. This talk gives an overview of the iterative solution strategy of JAS3D, the nonlinear large-deformation quasistatic finite element program. Because its architecture is derived from an explicit transient-dynamics code, it does not ever assemble a global stiffness matrix. The author describes the approach he used to implement the solver on multiprocessor computers, and shows examples of problems run on hundreds of processors and more than a million degrees of freedom. Finally, he describes some of the work he is presently doing to address the challenges of iterative convergence for ill-conditioned problems.

  9. Implementation of the HEPS Schoolkit: initial steps

    DEFF Research Database (Denmark)

    Simovska, Venka; Woynarovska, Barbara; Samdal, Oddrun

    This report is an output of one of the work packages of the HEPS project (WP8, Research on Implementation). It is based on a survey administered with the SHE national coordinators, and additional interviews related to the survey. The purpose is to learn at early stages of implementation, to combine...

  10. The path toward HEP High Performance Computing

    CERN Document Server

    Apostolakis, John; Carminati, Federico; Gheata, Andrei; Wenzel, Sandro

    2014-01-01

    High Energy Physics code has been known for making poor use of high performance computing architectures. Efforts in optimising HEP code on vector and RISC architectures have yield limited results and recent studies have shown that, on modern architectures, it achieves a performance between 10% and 50% of the peak one. Although several successful attempts have been made to port selected codes on GPUs, no major HEP code suite has a 'High Performance' implementation. With LHC undergoing a major upgrade and a number of challenging experiments on the drawing board, HEP cannot any longer neglect the less-than-optimal performance of its code and it has to try making the best usage of the hardware. This activity is one of the foci of the SFT group at CERN, which hosts, among others, the Root and Geant4 project. The activity of the experiments is shared and coordinated via a Concurrency Forum, where the experience in optimising HEP code is presented and discussed. Another activity is the Geant-V project, centred on th...

  11. On the Parallel Elliptic Single/Multigrid Solutions about Aligned and Nonaligned Bodies Using the Virtual Machine for Multiprocessors

    Directory of Open Access Journals (Sweden)

    A. Averbuch

    1994-01-01

    Full Text Available Parallel elliptic single/multigrid solutions around an aligned and nonaligned body are presented and implemented on two multi-user and single-user shared memory multiprocessors (Sequent Symmetry and MOS and on a distributed memory multiprocessor (a Transputer network. Our parallel implementation uses the Virtual Machine for Muli-Processors (VMMP, a software package that provides a coherent set of services for explicitly parallel application programs running on diverse multiple instruction multiple data (MIMD multiprocessors, both shared memory and message passing. VMMP is intended to simplify parallel program writing and to promote portable and efficient programming. Furthermore, it ensures high portability of application programs by implementing the same services on all target multiprocessors. The performance of our algorithm is investigated in detail. It is seen to fit well the above architectures when the number of processors is less than the maximal number of grid points along the axes. In general, the efficiency in the nonaligned case is higher than in the aligned case. Alignment overhead is observed to be up to 200% in the shared-memory case and up to 65% in the message-passing case. We have demonstrated that when using VMMP, the portability of the algorithms is straightforward and efficient.

  12. Design of Networks-on-Chip for Real-Time Multi-Processor Systems-on-Chip

    DEFF Research Database (Denmark)

    Sparsø, Jens

    2012-01-01

    This paper addresses the design of networks-on-chips for use in multi-processor systems-on-chips - the hardware platforms used in embedded systems. These platforms typically have to guarantee real-time properties, and as the network is a shared resource, it has to provide service guarantees...

  13. HEP Science Network Requirements--Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Bakken, Jon; Barczyk, Artur; Blatecky, Alan; Boehnlein, Amber; Carlson, Rich; Chekanov, Sergei; Cotter, Steve; Cottrell, Les; Crawford, Glen; Crawford, Matt; Dart, Eli; Dattoria, Vince; Ernst, Michael; Fisk, Ian; Gardner, Rob; Johnston, Bill; Kent, Steve; Lammel, Stephan; Loken, Stewart; Metzger, Joe; Mount, Richard; Ndousse-Fetter, Thomas; Newman, Harvey; Schopf, Jennifer; Sekine, Yukiko; Stone, Alan; Tierney, Brian; Tull, Craig; Zurawski, Jason

    2010-04-27

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the US Department of Energy Office of Science, the single largest supporter of basic research in the physical sciences in the United States. In support of the Office of Science programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years. In August 2009 ESnet and the Office of High Energy Physics (HEP), of the DOE Office of Science, organized a workshop to characterize the networking requirements of the programs funded by HEP. The International HEP community has been a leader in data intensive science from the beginning. HEP data sets have historically been the largest of all scientific data sets, and the communty of interest the most distributed. The HEP community was also the first to embrace Grid technologies. The requirements identified at the workshop are summarized below, and described in more detail in the case studies and the Findings section: (1) There will be more LHC Tier-3 sites than orginally thought, and likely more Tier-2 to Tier-2 traffic than was envisioned. It it not yet known what the impact of this will be on ESnet, but we will need to keep an eye on this traffic. (2) The LHC Tier-1 sites (BNL and FNAL) predict the need for 40-50 Gbps of data movement capacity in 2-5 years, and 100-200 Gbps in 5-10 years for HEP program related traffic. Other key HEP sites include LHC Tier-2 and Tier-3 sites, many of which are located at universities. To support the LHC, ESnet must continue its collaborations with university and international networks. (3) While in all cases the deployed 'raw' network bandwidth must exceed the user requirements in order to meet the data transfer and reliability requirements, network engineering for trans

  14. A magnet system for HEP experiments

    CERN Document Server

    Gaddi, A

    2012-01-01

    This chapter describes the sequence of steps that lead to the design of a magnet system for modern HEP detectors. We start looking to the main types of magnets used in HEP experiments, along with some basic formulae to set the main parameters, such as ampere-turns, impedance and stored energy. A section is dedicated to the description of the iron yoke, with emphasis on magnet-detector integration and assembly, steel characteristics, stray field issues and alternative design. In the second part of the chapter we start looking at a brief history of superconducting magnets and a comparison between warm and superconducting ones. Following that, we describe the commonly used superconducting cables, the conductor design and technology and the winding techniques. A section of the chapter is dedicated to the cryogenic design, vacuum insulation and other ancillary systems. We also describe the power circuit, with the power supply unit, the current leads, the current measurement devices and other instruments and safety...

  15. Future HEP Accelerators: The US Perspective

    CERN Document Server

    Bhat, Pushpalatha

    2015-01-01

    Accelerator technology has advanced tremendously since the introduction of accelerators in the 1930s, and particle accelerators have become indispensable instruments in high energy physics (HEP) research to probe Nature at smaller and smaller distances. At present, accelerator facilities can be classified into Energy Frontier colliders that enable direct discoveries and studies of high mass scale particles and Intensity Frontier accelerators for exploration of extremely rare processes, usually at relatively low energies. The near term strategies of the global energy frontier particle physics community are centered on fully exploiting the physics potential of the Large Hadron Collider (LHC) at CERN through its high-luminosity upgrade (HL-LHC), while the intensity frontier HEP research is focused on studies of neutrinos at the MW-scale beam power accelerator facilities, such as Fermilab Main Injector with the planned PIP-II SRF linac project. A number of next generation accelerator facilities have been proposed...

  16. Multi-processor system for real-time deconvolution and flow estimation in medical ultrasound

    DEFF Research Database (Denmark)

    Jensen, Jesper Lomborg; Jensen, Jørgen Arendt; Stetson, Paul F.

    1996-01-01

    filter is used with a second time-reversed recursive estimation step. Here it is necessary to perform about 70 arithmetic operations per RF sample or about 1 billion operations per second for real-time deconvolution. Furthermore, these have to be floating point operations due to the adaptive nature...... of the algorithms. Many of the algorithms can only be properly evaluated in a clinical setting with real-time processing, which generally cannot be done with conventional equipment. This paper therefore presents a multi-processor system capable of performing 1.2 billion floating point operations per second on RF...... of the system is its generous input/output bandwidth, that makes it easy to balance the computational load between the processors and prevents data starvation. Due to the use of floating point calculations it is possible to simulate all types of signal processing in modem ultrasound scanners, and this system is...

  17. Commodity multi-processor systems in the ATLAS level-2 trigger

    CERN Document Server

    Abolins, M; Bock, R; Bogaerts, J A C; Dawson, J; Ermoline, Y; Hauser, R; Kugel, A; Lay, R; Müller, M; Noffz, K H; Pope, B; Schlereth, J L; Werner, P

    2000-01-01

    Low cost SMP (symmetric multi-processor) systems provide substantial CPU and I/O capacity. These features together with the ease of system integration make them an attractive and cost effective solution for a number of real-time applications in event selection. In ATLAS we consider them as intelligent input buffers (an "active" ROB complex), as event flow supervisors or as powerful processing nodes. Measurements of the performance of one off-the-shelf commercial 4- processor PC with two PCI buses, equipped with commercial FPGA based data source cards (microEnable) and running commercial software are presented and mapped on such applications together with a long-term programme of work. The SMP systems may be considered as an important building block in future data acquisition systems. (9 refs).

  18. Quality-Driven Model-Based Design of MultiProcessor Embedded Systems for Highlydemanding Applications

    DEFF Research Database (Denmark)

    Jozwiak, Lech; Madsen, Jan

    2013-01-01

    opportunities have been created. The traditional applications can be served much better and numerous new sorts of embedded systems became technologically feasible and economically justified. Various monitoring, control, communication or multi-media systems that can be put on or embedded in (mobile, poorly...... unusual silicon and system complexity. The combination of the huge complexity with the stringent application requirements results in numerous serious design and development challenges, such as: accounting in design for more aspects and changed relationships among aspects, complex multi-objective MPSo......The recent spectacular progress in modern nano-dimension semiconductor technology enabled implementation of a complete complex multi-processor system on a single chip (MPSoC), global networking and mobile wire-less communication, and facilitated a fast progress in these areas. New important...

  19. A Resolution for Shared Memory Conflict in Multiprocessor System-on-a-Chip

    CERN Document Server

    Mittal, Shaily

    2012-01-01

    Now days, manufacturers are focusing on increasing the concurrency in multiprocessor system-on-a-chip (MPSoC) architecture instead of increasing clock speed, for embedded systems. Traditionally lock-based synchronization is provided to support concurrency; as managing locks can be very difficult and error prone. Transactional memories and lock based systems have been extensively used to provide synchronization between multiple processors [1] in general-purpose systems. It has been shown that locks have numerous shortcomings over transactional memory in terms of power consumption, ease of programming and performance. In this paper, we propose a new semaphore scheme for synchronization in shared cache memory in an MPSoC. Moreover, we have evaluated and compared our scheme with locks and transactions in terms of energy consumption and cache miss rate using SimpleScalar functional simulator.

  20. Prediction of Ready Queue Processing Time in Multiprocessor Environment Using Lottery Scheduling (ULS

    Directory of Open Access Journals (Sweden)

    Amita CHOUDHARY

    2011-01-01

    Full Text Available While in multi-user environment, CPU has to manage lot of requests generated over the same time. Waiting queue of processes generates a problem of scheduling for processors. Designers and hardware architects have suggested system of multiprocessors to overcome the queue length. Lottery scheduling is one such method where processes in waiting queue are selected through a chance manner. This opens a way to use probability models to get estimates of system parameters. This paper is an application where the processing time of jobs in ready queue is predicted using the sampling method under the k-processors environment (k>1.The random selection of one process by each of k processors through without replacement method is a sample data set which helps in the prediction of possible ready queue processing time. Some theorems are established and proved to get desired results in terms of confidence intervals.

  1. HyperForest: A high performance multi-processor architecture for real-time intelligent systems

    Energy Technology Data Exchange (ETDEWEB)

    Garcia, P. Jr.; Rebeil, J.P. [Sandia National Labs., Albuquerque, NM (United States); Pollard, H. [Univ. of New Mexico, Albuquerque, NM (United States). Electrical Engineering and Computer Engineering Dept.

    1997-04-01

    Intelligent Systems are characterized by the intensive use of computer power. The computer revolution of the last few years is what has made possible the development of the first generation of Intelligent Systems. Software for second generation Intelligent Systems will be more complex and will require more powerful computing engines in order to meet real-time constraints imposed by new robots, sensors, and applications. A multiprocessor architecture was developed that merges the advantages of message-passing and shared-memory structures: expendability and real-time compliance. The HyperForest architecture will provide an expandable real-time computing platform for computationally intensive Intelligent Systems and open the doors for the application of these systems to more complex tasks in environmental restoration and cleanup projects, flexible manufacturing systems, and DOE`s own production and disassembly activities.

  2. Implementation of 3D Lattice Monte Carlo Simulation on a Cluster of Symmetric Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    雷咏梅; 蒋英; 等

    2002-01-01

    This paper presents a new approach to parallelize 3D lattice Monte Carlo algorithms used in the numerical simulation of polymer on ZiQiang 2000-a cluster of symmetric multiprocessors(SMPs).The combined load for cell and energy calculations over the time step is balanced together to form a single spatial decomposition.Basic aspects and strategies of running Monte Carlo calculations on parallel computers are studied.Different steps involved in porting the software on a parallel architecture based on ZiQiang 2000 running under Linux and MPI are described briefly.It is found that parallelization becomes more advantageous when either the lattice is very large or the model contains many cells and chains.

  3. Simulation-based Modeling Frameworks for Networked Multi-processor System-on-Chip

    DEFF Research Database (Denmark)

    Mahadevan, Shankar

    2006-01-01

    This thesis deals with modeling aspects of multi-processor system-on-chip (MpSoC) design affected by the on-chip interconnect, also called the Network-on-Chip (NoC), at various levels of abstraction. To begin with, we undertook a comprehensive survey of research and design practices of networked Mp......SoC. The survey presents the challenges of modeling and performance analysis of the hardware and the software components used in such devices. These challenges are further exasperated in a mixed abstraction workspace, which is typical of complex MpSoC design environment. We provide two simulation-based frameworks...... and the RIPE frameworks allows easy incorporation of IP cores from either frameworks, into a new instance of the design. This could pave the way for seamless design evaluation from system-level to cycletrue abstraction in future component-based MpSoC design practice....

  4. A Comparative Analysis of Different Arbitration Protocols for Multiple—Bus Multiprocessors

    Institute of Scientific and Technical Information of China (English)

    庄旗铭; 杨庆; 等

    1996-01-01

    Earlier performance studies of multiple-bus multiprocessor systems assume a random selection of competing requests for bus assignment and ignore the effects of realistic bus arbitraion schemes on the performance of such systems.In this paper,we present performance analysis of the multiple-bus systems with different arbitration protocols.The priority protocols considered are random selection,fixed priority,rotating priority,round-robin and FIFO.Analytical models are developed for each of these five different priority protocols.Each of our analyses models exactly the behavior of the corresponding priority protocol with little computation cost.The analytical models are validated through extensive simulations and are them used to carry out performance analysis and comparison of different priority protocols.Numerical results obtained from our models show that the round-robin protocol performs the best amont the five protocols in the system with a few buses.

  5. Critical Task Re-assignment under Hybrid Scheduling Approach in Multiprocessor Real-Time Systems

    CERN Document Server

    Nair, Gopalakrishnan T R

    2012-01-01

    Embedded hard real time systems require substantial amount of emergency processing power for the management of large scale systems like a nuclear power plant under the threat of an earth quake or a future transport systems under a peril. In order to meet a fully coordinated supervisory control of multiple domains of a large scale system, it requires the scenario of engaging multiprocessor real time design. There are various types of scheduling schemes existing for meeting the critical task assignment in multiple processor environments and it requires the tracking of faulty conditions of the subsystem to avoid system underperformance from failure patterns. Hybrid scheduling usually engages a combined scheduling philosophy comprising of a static scheduling of a set of tasks and a highly pre-emptive scheduling for another set of tasks in different situations of process control. There are instances where highly critical tasks need to be introduced at a least expected catastrophe and it cannot be ensured to meet a...

  6. An Adaptive Genetic Algorithm for Multiprocessor Real-time Task Scheduling

    Institute of Scientific and Technical Information of China (English)

    LI Ya-jun; YANG Yu-hang

    2009-01-01

    Real-time task scheduling is of primary significance in multiprocessor systems. Meeting deadlines and achieving high system utilization are the two main objectives of task scheduling in such systems. In this paper,we represent those two goals as the minimization of the average response time and the average task laxity. To achieve this, we propose a genetic-based algorithm with problem-specific and efficient genetic operators. Adaptive control parameters are also employed in our work to improve the genetic algorithms' efficiency. The simulation results show that our proposed algorithm outperforms its counterpart considerably by up to 36% and 35% in terms of the average response time and the average task laxity,respectively.

  7. Analysis of Photonic Networks for a Chip Multiprocessor Using Scientific Applications

    Energy Technology Data Exchange (ETDEWEB)

    Kamil, Shoaib A; Hendry, Gilbert; Biberman, Aleksandr; Chan, Johnnie; Lee, Benjamin G.; Mohiyuddin, Marghoob; Jain, Ankit; Bergman, Keren; Carloni, Luca; Kubiatowicz, John; Oliker, Leonid; Shalf, John

    2009-01-31

    As multiprocessors scale to unprecedented numbers of cores in order to sustain performance growth, it is vital that these gains are not nullified by high energy consumption from inter-core communication. With recent advances in 3D Integration CMOS technology, the possibility for realizing hybrid photonic-electronic networks-on-chip warrants investigating real application traces on functionally comparable photonic and electronic network designs. We present a comparative analysis using both synthetic benchmarks as well as real applications, run through detailed cycle accurate models implemented under the OMNeT++ discrete event simulation environment. Results show that when utilizing standard process-to-processor mapping methods, this hybrid network can achieve 75X improvement in energy efficiency for synthetic benchmarks and up to 37X improvement for real scientific applications, defined as network performance per energy spent, over an electronic mesh for large messages across a variety of communication patterns.

  8. Scheduling multiprocessor job with resource and timing constraints using neural networks.

    Science.gov (United States)

    Huang, Y M; Chen, R M

    1999-01-01

    The Hopfield neural network is extensively applied to obtaining an optimal/feasible solution in many different applications such as the traveling salesman problem (TSP), a typical discrete combinatorial problem. Although providing rapid convergence to the solution, TSP frequently converges to a local minimum. Stochastic simulated annealing is a highly effective means of obtaining an optimal solution capable of preventing the local minimum. This important feature is embedded into a Hopfield neural network to derive a new technique, i.e., mean field annealing. This work applies the Hopfield neural network and the normalized mean field annealing technique, respectively, to resolve a multiprocessor problem (known to be a NP-hard problem) with no process migration, constrained times (execution time and deadline) and limited resources. Simulation results demonstrate that the derived energy function works effectively for this class of problems.

  9. Dynamic Scheduling Real-Time Task Using Primary-Backup Overloading Strategy for Multiprocessor Systems

    Science.gov (United States)

    Sun, Wei; Yu, Chen; Défago, Xavier; Inoguchi, Yasushi

    The scheduling of real-time tasks with fault-tolerant requirements has been an important problem in multiprocessor systems. The primary-backup (PB) approach is often used as a fault-tolerant technique to guarantee the deadlines of tasks despite the presence of faults. In this paper we propose a dynamic PB-based task scheduling approach, wherein an allocation parameter is used to search the available time slots for a newly arriving task, and the previously scheduled tasks can be re-scheduled when there is no available time slot for the newly arriving task. In order to improve the schedulability we also propose an overloading strategy for PB-overloading and Backup-backup (BB) overloading. Our proposed task scheduling algorithm is compared with some existing scheduling algorithms in the literature through simulation studies. The results have shown that the task rejection ratio of our real-time task scheduling algorithm is almost 50% lower than the compared algorithms.

  10. Modelling hadronic interactions in HEP MC generators

    CERN Document Server

    Skands, Peter

    2015-01-01

    HEP event generators aim to describe high-energy collisions in full exclusive detail. They combine perturbative matrix elements and parton showers with dynamical models of less well-understood phenomena such as hadronization, diffraction, and the so-called underlying event. We briefly summarise some of the main concepts relevant to the modelling of soft/inclusive hadron interactions in MC generators, in particular PYTHIA, with emphasis on questions recently highlighted by LHC data.

  11. Totem: a case study in HEP

    OpenAIRE

    Dusini, S.; Ferrari, F; Lazzizzera, I.; Lee, P.; Sartori, A; Sidoti, A; Tecchiolli, G.; Zorat, A.

    1997-01-01

    It is being proved that the neurochip \\Totem{} is a viable solution for high quality and real time computational tasks in HEP, including event classification, triggering and signal processing. The architecture of the chip is based on a "derivative free" algorithm called Reactive Tabu Search (RTS), highly performing even for low precision weights. ISA, VME or PCI boards integrate the chip as a coprocessor in a host computer. This paper presents: 1) the state of the art and the next evolution o...

  12. The path toward HEP High Performance Computing

    Science.gov (United States)

    Apostolakis, John; Brun, René; Carminati, Federico; Gheata, Andrei; Wenzel, Sandro

    2014-06-01

    High Energy Physics code has been known for making poor use of high performance computing architectures. Efforts in optimising HEP code on vector and RISC architectures have yield limited results and recent studies have shown that, on modern architectures, it achieves a performance between 10% and 50% of the peak one. Although several successful attempts have been made to port selected codes on GPUs, no major HEP code suite has a "High Performance" implementation. With LHC undergoing a major upgrade and a number of challenging experiments on the drawing board, HEP cannot any longer neglect the less-than-optimal performance of its code and it has to try making the best usage of the hardware. This activity is one of the foci of the SFT group at CERN, which hosts, among others, the Root and Geant4 project. The activity of the experiments is shared and coordinated via a Concurrency Forum, where the experience in optimising HEP code is presented and discussed. Another activity is the Geant-V project, centred on the development of a highperformance prototype for particle transport. Achieving a good concurrency level on the emerging parallel architectures without a complete redesign of the framework can only be done by parallelizing at event level, or with a much larger effort at track level. Apart the shareable data structures, this typically implies a multiplication factor in terms of memory consumption compared to the single threaded version, together with sub-optimal handling of event processing tails. Besides this, the low level instruction pipelining of modern processors cannot be used efficiently to speedup the program. We have implemented a framework that allows scheduling vectors of particles to an arbitrary number of computing resources in a fine grain parallel approach. The talk will review the current optimisation activities within the SFT group with a particular emphasis on the development perspectives towards a simulation framework able to profit best from

  13. Future HEP Accelerators: The US Perspective

    Energy Technology Data Exchange (ETDEWEB)

    Bhat, Pushpalatha [Fermilab; Shiltsev, Vladimir [Fermilab

    2015-11-02

    Accelerator technology has advanced tremendously since the introduction of accelerators in the 1930s, and particle accelerators have become indispensable instruments in high energy physics (HEP) research to probe Nature at smaller and smaller distances. At present, accelerator facilities can be classified into Energy Frontier colliders that enable direct discoveries and studies of high mass scale particles and Intensity Frontier accelerators for exploration of extremely rare processes, usually at relatively low energies. The near term strategies of the global energy frontier particle physics community are centered on fully exploiting the physics potential of the Large Hadron Collider (LHC) at CERN through its high-luminosity upgrade (HL-LHC), while the intensity frontier HEP research is focused on studies of neutrinos at the MW-scale beam power accelerator facilities, such as Fermilab Main Injector with the planned PIP-II SRF linac project. A number of next generation accelerator facilities have been proposed and are currently under consideration for the medium- and long-term future programs of accelerator-based HEP research. In this paper, we briefly review the post-LHC energy frontier options, both for lepton and hadron colliders in various regions of the world, as well as possible future intensity frontier accelerator facilities.

  14. HEP data in education and outreach efforts

    Science.gov (United States)

    Bellis, Matt

    2010-02-01

    The High Energy Physics (HEP) community has recognized that data preservation is an important part of our future and has organized an international working committee to address this. Beyond the continued data mining which can take place, there is a great opportunity to use these datasets as teaching tools, both for university students and an interested general public. The BABAR experiment at the SLAC National Accelerator Laboratory has a dedicated group working on the preservation effort; the education and outreach effort is a significant goal of this group. Retention of knowledge and conceptual understanding is enhanced by active participation in problem solving -- a challenge that can be addressed with more involved projects than currently available to the general public from the HEP outreach centers. We are developing a framework that will make subsets of the BABAR dataset available to others, along with computing tools and tutorials, so that interested parties can work through either parts or the whole of a variety of analyses. With the proper framework, this may be used by other HEP experiments as a way to make their physics available and teachable beyond our community. The scope of this project may be extended to teach the next generation of particle physicists, who may lack immediate data, by providing them with datasets with which to prepare themselves for upcoming experiments. )

  15. MORA: an Energy-Aware Slack Reclamation Scheme for Scheduling Sporadic Real-Time Tasks upon Multiprocessor Platforms

    OpenAIRE

    Nelis, Vincent; Goossens, Joel

    2009-01-01

    In this paper, we address the global and preemptive energy-aware scheduling problem of sporadic constrained-deadline tasks on DVFS-identical multiprocessor platforms. We propose an online slack reclamation scheme which profits from the discrepancy between the worst- and actual-case execution time of the tasks by slowing down the speed of the processors in order to save energy. Our algorithm called MORA takes into account the application-specific consumption profile of the tasks. We demonstrat...

  16. Online Production Validation in a HEP environment

    CERN Document Server

    Harenberg, T; Mättig, P; Sandhoff, M; Volkmer, F; Kuhl, T; Schwanenberger, C

    2016-01-01

    Petabytes of data are to be processed and stored requiring millions of CPU-years in high energy particle (HEP) physics event simulation. This enormous demand is handled in worldwide distributed computing centers as part of the LHC computing grid. These significant resources require a high quality and efficient production and the early detection of potential errors. In this article we present novel monitoring techniques in a Grid environment to collect quality measures during job execution. This allows online assessment of data quality information to avoid configuration errors or inappropriate settings of simulation parameters and therefore is able to save time and resources.

  17. Automatic Computation of Cross Sections in HEP

    CERN Document Server

    Yuasa, F; Ishikawa, T; Jimbo, M; Kaneko, T; Kato, K; Kawabata, S; Kon, T; Kurihara, Y; Kuroda, M; Nakazawa, N; Shimizu, Y; Tanaka, H

    2000-01-01

    For the study of reactions in High Energy Physics (HEP) automatic computation systems have been developed and are widely used nowadays. GRACE is one of such systems and it has achieved much success in analyzing experimental data. Since we deal with the cross section whose value can be given by calculating hundreds of Feynman diagrams, we manage the large scale calculation, so that effective symbolic manipulation, the treat of singularity in the numerical integration are required. The talk will describe the software design of GRACE system and computational techniques in the GRACE.

  18. HEP technologies to address medical imaging challenges

    CERN Document Server

    CERN. Geneva

    2016-01-01

    Developments in detector technologies aimed at solving challenges in present and future CERN experiments, particularly at the LHC, have triggered exceptional advances in the performance of medical imaging devices, allowing for a spectacular progress in in-vivo molecular imaging procedures, which are opening the way for tailored therapies of major diseases. This talk will briefly review the recent history of this prime example of technology transfer from HEP experiments to society, will describe the technical challenges being addressed by some ongoing projects, and will present a few new ideas for further developments and their foreseeable impact.

  19. Totem a case study in HEP

    CERN Document Server

    Dusini, S; Lazzizzera, I; Lee, P; Sartori, A; Sidoti, A; Tecchiolli, G P; Zorat, A

    1997-01-01

    It is being proved that the neurochip \\Totem{} is a viable solution for high quality and real time computational tasks in HEP, including event classification, triggering and signal processing. The architecture of the chip is based on a "derivative free" algorithm called Reactive Tabu Search (RTS), highly performing even for low precision weights. ISA, VME or PCI boards integrate the chip as a coprocessor in a host computer. This paper presents: 1) the state of the art and the next evolution of the design of \\Totem{}; 2) its ability in the Higgs search at LHC as an example.

  20. Online production validation in a HEP environment

    Science.gov (United States)

    Harenberg, T.; Kuhl, T.; Lang, N.; Mättig, P.; Sandhoff, M.; Schwanenberger, C.; Volkmer, F.

    2017-03-01

    In high energy physics (HEP) event simulations, petabytes of data are processed and stored requiring millions of CPU-years. This enormous demand for computing resources is handled by centers distributed worldwide, which form part of the LHC computing grid. The consumption of such an important amount of resources demands for an efficient production of simulation and for the early detection of potential errors. In this article we present a new monitoring framework for grid environments, which polls a measure of data quality during job execution. This online monitoring facilitates the early detection of configuration errors (specially in simulation parameters), and may thus contribute to significant savings in computing resources.

  1. Detector Simulations with DD4hep

    CERN Document Server

    AUTHOR|(SzGeCERN)668365; Frank, Markus; Gaede, Frank-Dieter; Lu, Shaojun; Nikiforou, Nikiforos; Sailer, Andre

    2017-01-01

    Detector description is a key component of detector design studies, test beam analyses, and most of particle physics experiments that require the simulation of more and more different detector geometries and event types. This paper describes DD4hep, which is an easy-to-use yet flexible and powerful detector description framework that can be used for detector simulation and also extended to specific needs for a particular working environment. Linear collider detector concepts ILD, SiD and CLICdp as well as detector development collaborations CALICE and FCal have chosen to adopt the DD4hep geometry framework and its DDG4 pathway to Geant4 as its core simulation and reconstruction tools. The DDG4 plugins suite includes a wide variety of input formats, provides access to the Geant4 particle gun or general particles source and allows for handling of Monte Carlo truth information, e.g. by linking hits and the primary particle that caused them, which is indispensable for performance and efficiency studies. An extend...

  2. Detector Simulations with DD4hep

    CERN Document Server

    AUTHOR|(SzGeCERN)668365; Frank, Markus; Gaede, Frank-Dieter; Lu, Shaojun; Nikiforou, Nikiforos; Sailer, Andre

    2017-01-01

    Detector description is a key component of detector design studies, test beam analyses, and most of particle physics experiments that require the simulation of more and more different detector geometries and event types. This paper describes DD4hep, which is an easy-to-use yet flexible and powerful detector description framework that can be used for detector simulation and also extended to specific needs for a particular working environment. Linear collider detector concepts ILD, SiD and CLICdp as well as detector development collaborations CALICE and FCal have chosen to adopt the DD4hep geometry framework and its DDG4 pathway to Geant4 as its core simulation and reconstruction tools. The DDG4 plugins suite includes a wide variety of input formats, provides access to the Geant4 particle gun or general particles source and allows for handling of Monte Carlo truth information, e.g. by linking hits and the primary particle that caused them, which is indispensable for performance and efficiency studies. An extend...

  3. II - Multivariate Classification and Machine Learning in HEP

    CERN Document Server

    CERN. Geneva

    2016-01-01

    A summary of the history of deep-learning is given and the difference to traditional artificial neural networks is discussed. Advanced methods like convoluted neural networks, recurrent neural networks and unsupervised training are introduced. Interesting examples from this emerging field outside HEP are presented. Possible applications in HEP are discussed.

  4. Implementation of an OFDM underwater acoustic communication system,on an underwater vehicle with multiprocessor structure

    Institute of Scientific and Technical Information of China (English)

    YAN Zhenhua; HUANG Jianguo; HE Chengbing

    2007-01-01

    Orthogonal frequency division multiplexing (OFDM) can fully use the frequency band and transmit data at high speeds.The ADSP-TS101 is a high performance digital signal processor (DSP) with good properties that include parallel processing and a high speed.Aimed at the real-time processing requirement of the OFDM algorithm,an underwater acoustic communication system with real-time processing capability is carried out.The system is mainly composed of multiple ADSP-TS 101 s,a multi-channel synchronous sample module and a field programmable gate array (FPGA) chip.The multiprocessor structure is made up of a cluster/data flow associated multiprocessing parallel processing structure as the operation kernel,and a multichannel synchronous sample module is designed to realize no phase warp among the multiple channels' data at the same time.The digital modulation/demodulation methods are applied to the OFDM algorithm.Through experiments in a lake,the results show that the system has good stability and real-time processing capability,thus satisfying the design requirements.

  5. Trade-Off Exploration for Target Tracking Application in a Customized Multiprocessor Architecture

    Directory of Open Access Journals (Sweden)

    Yassin El-Hillali

    2009-01-01

    Full Text Available This paper presents the design of an FPGA-based multiprocessor-system-on-chip (MPSoC architecture optimized for Multiple Target Tracking (MTT in automotive applications. An MTT system uses an automotive radar to track the speed and relative position of all the vehicles (targets within its field of view. As the number of targets increases, the computational needs of the MTT system also increase making it difficult for a single processor to handle it alone. Our implementation distributes the computational load among multiple soft processor cores optimized for executing specific computational tasks. The paper explains how we designed and profiled the MTT application to partition it among different processors. It also explains how we applied different optimizations to customize the individual processor cores to their assigned tasks and to assess their impact on performance and FPGA resource utilization. The result is a complete MTT application running on an optimized MPSoC architecture that fits in a contemporary medium-sized FPGA and that meets the application's real-time constraints.

  6. A Taxonomy of Reconfigurable Single-/Multiprocessor Systems-on-Chip

    Directory of Open Access Journals (Sweden)

    Diana Göhringer

    2009-01-01

    Full Text Available Runtime adaptivity of hardware in processor architectures is a novel trend, which is under investigation in a variety of research labs all over the world. The runtime exchange of modules, implemented on a reconfigurable hardware, affects the instruction flow (e.g., in reconfigurable instruction set processors or the data flow, which has a strong impact on the performance of an application. Furthermore, the choice of a certain processor architecture related to the class of target applications is a crucial point in application development. A simple example is the domain of high-performance computing applications found in meteorology or high-energy physics, where vector processors are the optimal choice. A classification scheme for computer systems was provided in 1966 by Flynn where single/multiple data and instruction streams were combined to four types of architectures. This classification is now used as a foundation for an extended classification scheme including runtime adaptivity as further degree of freedom for processor architecture design. The developed scheme is validated by a multiprocessor system implemented on reconfigurable hardware as well as by a classification of existing static and reconfigurable processor systems.

  7. E-Token Energy-Aware Proportionate Sharing Scheduling Algorithm for Multiprocessor Systems

    Directory of Open Access Journals (Sweden)

    Pasupuleti Ramesh

    2017-01-01

    Full Text Available WSN plays vital role from small range healthcare surveillance systems to largescale environmental monitoring. Its design for energy constrained applications is a challenging issue. Sensors in WSNs are projected to run separately for longer periods. It is of excessive cost to substitute exhausted batteries which is not even possible in antagonistic situations. Multiprocessors are used in WSNs for high performance scientific computing, where each processor is assigned the same or different workload. When the computational demands of the system increase then the energy efficient approaches play an important role to increase system lifetime. Energy efficiency is commonly carried out by using proportionate fair scheduler. This introduces abnormal overloading effect. In order to overcome the existing problems E-token Energy-Aware Proportionate Sharing (EEAPS scheduling is proposed here. The power consumption for each thread/task is calculated and the tasks are allotted to the multiple processors through the auctioning mechanism. The algorithm is simulated by using the real-time simulator (RTSIM and the results are tested.

  8. Reconfigurable fault-tolerant multiprocessor system for real-time control

    Energy Technology Data Exchange (ETDEWEB)

    Kao, M.L.

    1986-01-01

    Real-time control applications place stringent constraints in computers controlling them since the failure of a computer could result in costly damages and even loss of human lives. Fault-tolerant computers, therefore, have been always in high demand in critical avionic and aerospace applications. However, the use of redundancy techniques to achieve fault tolerance in industrial applications has only recently become feasible due to the rapid decrease in cost and increase in performance of microprocessors. As more and more robots are being built to replace human beings in dangerous and difficult tasks, the need for a reliable computer for robotics control increases. This need, in particular, motivated the research described in this dissertation - the design and implementation of a reconfigurable fault-tolerant multiprocessor system (the FREMP system). The FREMP system consists of four processing units (PUs) and three common parallel buses. Each PU is a combination of an Intel 86/30 single board computer and a custom fault detection/masking circuit board (FDM board). A hardware/software combined scheme was devised to detect faults and correct errors. This scheme has shown to be more efficient than software voting while maintaining the flexibility of software approaches. Time-frame scheduling was adopted to schedule tasks for execution.

  9. Trade-Off Exploration for Target Tracking Application in a Customized Multiprocessor Architecture

    Directory of Open Access Journals (Sweden)

    Saghir MazenAR

    2009-01-01

    Full Text Available Abstract This paper presents the design of an FPGA-based multiprocessor-system-on-chip (MPSoC architecture optimized for Multiple Target Tracking (MTT in automotive applications. An MTT system uses an automotive radar to track the speed and relative position of all the vehicles (targets within its field of view. As the number of targets increases, the computational needs of the MTT system also increase making it difficult for a single processor to handle it alone. Our implementation distributes the computational load among multiple soft processor cores optimized for executing specific computational tasks. The paper explains how we designed and profiled the MTT application to partition it among different processors. It also explains how we applied different optimizations to customize the individual processor cores to their assigned tasks and to assess their impact on performance and FPGA resource utilization. The result is a complete MTT application running on an optimized MPSoC architecture that fits in a contemporary medium-sized FPGA and that meets the application's real-time constraints.

  10. Optimal Scheme for Search State Space and Scheduling on Multiprocessor Systems

    Science.gov (United States)

    Youness, Hassan A.; Sakanushi, Keishi; Takeuchi, Yoshinori; Salem, Ashraf; Wahdan, Abdel-Moneim; Imai, Masaharu

    A scheduling algorithm aims to minimize the overall execution time of the program by properly allocating and arranging the execution order of the tasks on the core processors such that the precedence constraints among the tasks are preserved. In this paper, we present a new scheduling algorithm by using geometry analysis of the Task Precedence Graph (TPG) based on A* search technique and uses a computationally efficient cost function for guiding the search with reduced complexity and pruning techniques to produce an optimal solution for the allocation/scheduling problem of a parallel application to parallel and multiprocessor architecture. The main goal of this work is to significantly reduce the search space and achieve the optimality or near optimal solution. We implemented the algorithm on general task graph problems that are processed on most of related search work and obtain the optimal scheduling with a small number of states. The proposed algorithm reduced the exhaustive search by at least 50% of search space. The viability and potential of the proposed algorithm is demonstrated by an illustrative example.

  11. NR/HEP: roadmap for the future

    CERN Document Server

    Cardoso, Vitor; Herdeiro, Carlos; Sperhake, Ulrich; Chesler, Paul M; Lehner, Luis; Park, Seong Chan; Reall, Harvey S; Sopuerta, Carlos F; Alic, Daniela; Dias, Oscar J C; Emparan, Roberto; Ferrari, Valeria; Giddings, Steven B; Godazgar, Mahdi; Gregory, Ruth; Hubeny, Veronika E; Ishibashi, Akihiro; Landsberg, Greg; Lousto, Carlos O; Mateos, David; Moeller, Vicki; Okawa, Hirotada; Pani, Paolo; Parker, M Andy; Pretorius, Frans; Shibata, Masaru; Sotani, Hajime; Wiseman, Toby; Witek, Helvi; Yunes, Nicolas; Zilhao, Miguel

    2012-01-01

    Physics in curved spacetime describes a multitude of phenomena, ranging from astrophysics to high energy physics. The last few years have witnessed further progress on several fronts, including the accurate numerical evolution of the gravitational field equations, which now allows highly nonlinear phenomena to be tamed. Numerical relativity simulations, originally developed to understand strong field astrophysical processes, could prove extremely useful to understand high-energy physics processes like trans-Planckian scattering and gauge-gravity dualities. We present a concise and comprehensive overview of the state-of-the-art and important open problems in the field(s), along with guidelines for the next years. This writeup is a summary of the "NR/HEP Workshop" held in Madeira, Portugal from August 31st to September 3rd 2011.

  12. HEP experiments in Japan The Next Generation

    CERN Document Server

    Itoh, Ryosuke

    2009-01-01

    The HEP experiment in Japan is now stepping into next phase. J-PARC, which is a newly-built high intensity proton synchrotron facility, has started the operation recently. A new long-baseline neutrino experiment T2K is now at the commissioning stage utilizing the beam. In parallel, the upgrade of KEKB/Belle, a new generation B-factory experiment at KEK, is about to start. The accelerator will be upgraded to SuperKEKB whose luminosity is expected to be about 50 times higher. The detector is also upgraded to Belle II to keep up with the drastic increase. In this talk, a detailed review is given for these new experiments with some coverage of the readout and DAQ technologies.

  13. Electronic Circuit Design Using HEP Computational Tools

    Science.gov (United States)

    Vaz, MÁRio

    CPSPICE is an eletronic circuit statistical simulation program develloped to run in a parallel environment under UNIX operating system and TCP/IP communications protocol, using CPS - Cooperative Processes Software, SPICE program and CERNLIB software package. It is part of a set of tools being devellop, intended to help electronic engineers to design, model and simulate complex systems and circuits for High Energy Physics detectors, based on statistical methods, using the same software and methodology used by HEP physicists for data analysis. CPSPICE simulates electronic circuits by Monte Carlo method, through several different processes running simultaneously SPICE in UNIX paralell computers or workstation farms. Data transfer between CPS processes for a modified version of SPICE2G6 is done by RAM memory, but can also be done through hard disk files if no source files are available for the simulator, and for bigger simulation output files. Simulation results are written in a HBOOK file as a NTUPLE, to be examined by HBOOK in batch model or interactevely by PAW - Physics Analysis Workstation -programs. The results can be visualized through histograms and graphics, and analyzed by statistical procedures available. The HBOOK file can be stored on hard disk for small amount of data, or into Exabyte tape file for large amount of data. HEP tools also helps circuit or component modelling, like MINUIT program from CERNLIB, that implements Nelder & Mead Simplex and Gradient with or without derivatives algorithms, and can be used for design optimization. This paper presents CPSPICE program implementation. The scheme adopted is suitable to make parallel other electronic circuit simulators.

  14. External validation of the HIT Expert Probability (HEP) score.

    Science.gov (United States)

    Joseph, Lee; Gomes, Marcelo P V; Al Solaiman, Firas; St John, Julie; Ozaki, Asuka; Raju, Manjunath; Dhariwal, Manoj; Kim, Esther S H

    2015-03-01

    The diagnosis of heparin-induced thrombocytopenia (HIT) can be challenging. The HIT Expert Probability (HEP) Score has recently been proposed to aid in the diagnosis of HIT. We sought to externally and prospectively validate the HEP score. We prospectively assessed pre-test probability of HIT for 51 consecutive patients referred to our Consultative Service for evaluation of possible HIT between August 1, 2012 and February 1, 2013. Two Vascular Medicine fellows independently applied the 4T and HEP scores for each patient. Two independent HIT expert adjudicators rendered a diagnosis of HIT likely or unlikely. The median (interquartile range) of 4T and HEP scores were 4.5 (3.0, 6.0) and 5 (3.0, 8.5), respectively. There were no significant differences between area under receiver-operating characteristic curves of 4T and HEP scores against the gold standard, confirmed HIT [defined as positive serotonin release assay and positive anti-PF4/heparin ELISA] (0.74 vs 0.73, p = 0.97). HEP score ≥ 2 was 100 % sensitive and 16 % specific for determining the presence of confirmed HIT while a 4T score > 3 was 93 % sensitive and 35 % specific. In conclusion, the HEP and 4T scores are excellent screening pre-test probability models for HIT, however, in this prospective validation study, test characteristics for the diagnosis of HIT based on confirmatory laboratory testing and expert opinion are similar. Given the complexity of the HEP scoring model compared to that of the 4T score, further validation of the HEP score is warranted prior to widespread clinical acceptance.

  15. Does HEP still hold challenges for computer science

    Energy Technology Data Exchange (ETDEWEB)

    Hertzberger, L.O. (Amsterdam Univ. (Netherlands). Computer Systems Group)

    1989-12-01

    The characteristics of High Energy Physics (HEP) as well as Computer Science (CS) are changing. In HEP the ever larger scale of exerpimentation results in a dramatic increase in the amount of data that has to be handled. Consequently, computing techniques have to be found to keep the data manageable. Computing science has become more mature, realizing that it has to develop models and techniques applicable to a wide range of problems. Moreover, the interest has shifted to computing problems in everyday life, where emphasis is more on symbolic than numeric computation. It will be illustrated that HEP still offers challenges to CS, but that the nature of collaboration has changed considerably. (orig.).

  16. Evaluation of containers as a virtualisation alternative for HEP workloads

    Science.gov (United States)

    Roy, Gareth; Washbrook, Andrew; Crooks, David; Qin, Gang; Cadellin Skipsey, Samuel; Stewart, Gordon; Britton, David

    2015-12-01

    In this paper the emerging technology of Linux containers is examined and evaluated for use in the High Energy Physics (HEP) community. Key technologies required to enable containerisation will be discussed along with emerging technologies used to manage container images. An evaluation of the requirements for containers within HEP will be made and benchmarking will be carried out to asses performance over a range of HEP workflows. The use of containers will be placed in a broader context and recommendations on future work will be given.

  17. Design concepts for a virtualizable embedded MPSoC architecture enabling virtualization in embedded multi-processor systems

    CERN Document Server

    Biedermann, Alexander

    2014-01-01

    Alexander Biedermann presents a generic hardware-based virtualization approach, which may transform an array of any off-the-shelf embedded processors into a multi-processor system with high execution dynamism. Based on this approach, he highlights concepts for the design of energy aware systems, self-healing systems as well as parallelized systems. For the latter, the novel so-called Agile Processing scheme is introduced by the author, which enables a seamless transition between sequential and parallel execution schemes. The design of such virtualizable systems is further aided by introduction

  18. Climbing depth-bounded adjacent discrepancy search for solving hybrid flow shop scheduling problems with multiprocessor tasks

    CERN Document Server

    Lahimer, Asma; Haouari, Mohamed

    2011-01-01

    This paper considers multiprocessor task scheduling in a multistage hybrid flow-shop environment. The problem even in its simplest form is NP-hard in the strong sense. The great deal of interest for this problem, besides its theoretical complexity, is animated by needs of various manufacturing and computing systems. We propose a new approach based on limited discrepancy search to solve the problem. Our method is tested with reference to a proposed lower bound as well as the best-known solutions in literature. Computational results show that the developed approach is efficient in particular for large-size problems.

  19. Embedded software design and programming of multiprocessor system-on-chip simulink and system C case studies

    CERN Document Server

    Popovici, Katalin; Jerraya, Ahmed A; Wolf, Marilyn

    2010-01-01

    Current multimedia and telecom applications require complex, heterogeneous multiprocessor system on chip (MPSoC) architectures with specific communication infrastructure in order to achieve the required performance. Heterogeneous MPSoC includes different types of processing units (DSP, microcontroller, ASIP) and different communication schemes (fast links, non standard memory organization and access).Programming an MPSoC requires the generation of efficient software running on MPSoC from a high level environment, by using the characteristics of the architecture. This task is known to be tediou

  20. Computational design of RNA parts, devices, and transcripts with kinetic folding algorithms implemented on multiprocessor clusters.

    Science.gov (United States)

    Thimmaiah, Tim; Voje, William E; Carothers, James M

    2015-01-01

    With progress toward inexpensive, large-scale DNA assembly, the demand for simulation tools that allow the rapid construction of synthetic biological devices with predictable behaviors continues to increase. By combining engineered transcript components, such as ribosome binding sites, transcriptional terminators, ligand-binding aptamers, catalytic ribozymes, and aptamer-controlled ribozymes (aptazymes), gene expression in bacteria can be fine-tuned, with many corollaries and applications in yeast and mammalian cells. The successful design of genetic constructs that implement these kinds of RNA-based control mechanisms requires modeling and analyzing kinetically determined co-transcriptional folding pathways. Transcript design methods using stochastic kinetic folding simulations to search spacer sequence libraries for motifs enabling the assembly of RNA component parts into static ribozyme- and dynamic aptazyme-regulated expression devices with quantitatively predictable functions (rREDs and aREDs, respectively) have been described (Carothers et al., Science 334:1716-1719, 2011). Here, we provide a detailed practical procedure for computational transcript design by illustrating a high throughput, multiprocessor approach for evaluating spacer sequences and generating functional rREDs. This chapter is written as a tutorial, complete with pseudo-code and step-by-step instructions for setting up a computational cluster with an Amazon, Inc. web server and performing the large numbers of kinefold-based stochastic kinetic co-transcriptional folding simulations needed to design functional rREDs and aREDs. The method described here should be broadly applicable for designing and analyzing a variety of synthetic RNA parts, devices and transcripts.

  1. Deploying HEP applications using Xen and Globus Virtual Workspaces

    Science.gov (United States)

    Agarwal, A.; Desmarais, R.; Gable, I.; Grundy, D.; P-Brown, D.; Seuster, R.; Vanderster, D. C.; Charbonneau, A.; Enge, R.; Sobie, R.

    2008-07-01

    The deployment of HEP applications in heterogeneous grid environments can be challenging because many of the applications are dependent on specific OS versions and have a large number of complex software dependencies. Virtual machine monitors such as Xen could be used to package HEP applications, complete with their execution environments, to run on resources that do not meet their operating system requirements. Our previous work has shown HEP applications running within Xen suffer little or no performance penalty as a result of virtualization. However, a practical strategy is required for remotely deploying, booting, and controlling virtual machines on a remote cluster. One tool that promises to overcome the deployment hurdles using standard grid technology is the Globus Virtual Workspaces project. We describe strategies for the deployment of Xen virtual machines using Globus Virtual Workspace middleware that simplify the deployment of HEP applications.

  2. Deploying HEP applications using Xen and Globus Virtual Workspaces

    Energy Technology Data Exchange (ETDEWEB)

    Agarwal, A; Desmarais, R; Gable, I; Grundy, D; P-Brown, D; Seuster, R; Vanderster, D C; Sobie, R [Department of Physics and Astronomy, University of Victoria, Victoria (Canada); Charbonneau, A [Research Computing Support Group, National Research Council of Canada, Ottawa (Canada); Enge, R [Computer and Systems Support Group, University of Victoria, Victoria (Canada)], E-mail: igable@uvic.ca

    2008-07-15

    The deployment of HEP applications in heterogeneous grid environments can be challenging because many of the applications are dependent on specific OS versions and have a large number of complex software dependencies. Virtual machine monitors such as Xen could be used to package HEP applications, complete with their execution environments, to run on resources that do not meet their operating system requirements. Our previous work has shown HEP applications running within Xen suffer little or no performance penalty as a result of virtualization. However, a practical strategy is required for remotely deploying, booting, and controlling virtual machines on a remote cluster. One tool that promises to overcome the deployment hurdles using standard grid technology is the Globus Virtual Workspaces project. We describe strategies for the deployment of Xen virtual machines using Globus Virtual Workspace middleware that simplify the deployment of HEP applications.

  3. The Classification of HEp-2 Cell Patterns Using Fractal Descriptor.

    Science.gov (United States)

    Xu, Rudan; Sun, Yuanyuan; Yang, Zhihao; Song, Bo; Hu, Xiaopeng

    2015-07-01

    Indirect immunofluorescence (IIF) with HEp-2 cells is considered as a powerful, sensitive and comprehensive technique for analyzing antinuclear autoantibodies (ANAs). The automatic classification of the HEp-2 cell images from IIF has played an important role in diagnosis. Fractal dimension can be used on the analysis of image representing and also on the property quantification like texture complexity and spatial occupation. In this study, we apply the fractal theory in the application of HEp-2 cell staining pattern classification, utilizing fractal descriptor firstly in the HEp-2 cell pattern classification with the help of morphological descriptor and pixel difference descriptor. The method is applied to the data set of MIVIA and uses the support vector machine (SVM) classifier. Experimental results show that the fractal descriptor combining with morphological descriptor and pixel difference descriptor makes the precisions of six patterns more stable, all above 50%, achieving 67.17% overall accuracy at best with relatively simple feature vectors.

  4. West Foster Creek Expansion Project 2007 HEP Report.

    Energy Technology Data Exchange (ETDEWEB)

    Ashley, Paul R.

    2008-02-01

    During April and May 2007, the Columbia Basin Fish and Wildlife Authority's (CBFWA) Regional HEP Team (RHT) conducted baseline Habitat Evaluation Procedures (HEP) (USFWS 1980, 1980a) analyses on five parcels collectively designated the West Foster Creek Expansion Project (3,756.48 acres). The purpose of the HEP analyses was to document extant habitat conditions and to determine how many baseline/protection habitat units (HUs) to credit Bonneville Power Administration (BPA) for funding maintenance and enhancement activities on project lands as partial mitigation for habitat losses associated with construction of Grand Coulee and Chief Joseph Dams. HEP evaluation models included mule deer (Odocoileus hemionus), western meadowlark (Sturnella neglecta), sharp-tailed grouse, (Tympanuchus phasianellus), Bobcat (Lynx rufus), mink (Neovison vison), mallard (Anas platyrhynchos), and black-capped chickadee (Parus atricapillus). Combined 2007 baseline HEP results show that 4,946.44 habitat units were generated on 3,756.48 acres (1.32 HUs per acre). HEP results/habitat conditions were generally similar for like cover types at all sites. Unlike crediting of habitat units (HUs) on other WDFW owned lands, Bonneville Power Administration received full credit for HUs generated on these sites.

  5. HEPS-BPIX, a single photon counting pixel detector with a high frame rate for the HEPS project

    Science.gov (United States)

    Wei, Wei; Zhang, Jie; Ning, Zhe; Lu, Yunpeng; Fan, Lei; Li, Huaishen; Jiang, Xiaoshan; Lan, Allan K.; Ouyang, Qun; Wang, Zheng; Zhu, Kejun; Chen, Yuanbo; Liu, Peng

    2016-11-01

    China's next generation light source, named the High Energy Photon Source (HEPS), is currently under construction. HEPS-BPIX (HEPS-Beijing PIXel) is a dedicated pixel readout chip that operates in single photon counting mode for X-ray applications in HEPS. Designed using CMOS 0.13 μm technology, the chip contains a matrix of 104×72 pixels. Each pixel measures 150 μm×150 μm and has a counting depth of 20 bits. A bump-bonded prototyping detector module with a 300-μm thick silicon sensor was tested in the beamline of Beijing Synchrotron Radiation Facility. A fast stream of X-ray images was demonstrated, and a frame rate of 1.2 kHz was proven, with a negligible dead time. The test results showed an equivalent noise charge of 115 e- rms after bump bonding and a threshold dispersion of 55 e- rms after calibration.

  6. Building global HEP systems on Kerberos

    Energy Technology Data Exchange (ETDEWEB)

    Crawford, Matt; /Fermilab

    2004-12-01

    As an underpinning of AFS and Windows 2000, and as a formally proven security protocol [1] in its own right, Kerberos is ubiquitous among HEP sites. Fermilab and users from other sites have taken advantage of this and built a diversity of distributed applications over Kerberos v5. We present several projects in which this security infrastructure has been leveraged to meet the requirements of geographically dispersed collaborations. These range from straightforward ''Kerberization'' of applications such as database and batch services, to quick tricks like simulating a user-authenticated web service with AFS and the ''file'': schema, to more complex systems. Examples of the latter include experiment control room operations and the Central Analysis Farm (CAF). We present several use cases and their security models, and examine how they attempt to address some of the outstanding problems of secure distributed computing: delegation of the least necessary privilege; establishment of trust between a user and a remote processing facility; credentials for long-queued or long-running processes, and automated processes running without any user's presence; security of remotely-stored credentials; and ability to scale to the numbers of sites, machines and users expected in the collaborations of the coming decade.

  7. Process Management and Exception Handling in Multiprocessor Operating Systems Using Object-Oriented Design Techniques. Revised Sep. 1988

    Science.gov (United States)

    Russo, Vincent; Johnston, Gary; Campbell, Roy

    1988-01-01

    The programming of the interrupt handling mechanisms, process switching primitives, scheduling mechanism, and synchronization primitives of an operating system for a multiprocessor require both efficient code in order to support the needs of high- performance or real-time applications and careful organization to facilitate maintenance. Although many advantages have been claimed for object-oriented class hierarchical languages and their corresponding design methodologies, the application of these techniques to the design of the primitives within an operating system has not been widely demonstrated. To investigate the role of class hierarchical design in systems programming, the authors have constructed the Choices multiprocessor operating system architecture the C++ programming language. During the implementation, it was found that many operating system design concerns can be represented advantageously using a class hierarchical approach, including: the separation of mechanism and policy; the organization of an operating system into layers, each of which represents an abstract machine; and the notions of process and exception management. In this paper, we discuss an implementation of the low-level primitives of this system and outline the strategy by which we developed our solution.

  8. Comparative cytotoxicity of dolomite nanoparticles in human larynx HEp2 and liver HepG2 cells.

    Science.gov (United States)

    Ahamed, Maqusood; Alhadlaq, Hisham A; Ahmad, Javed; Siddiqui, Maqsood A; Khan, Shams T; Musarrat, Javed; Al-Khedhairy, Abdulaziz A

    2015-06-01

    Dolomite is a natural mineral of great industrial and commercial importance. With the advent of nanotechnology, natural minerals including dolomite in the form of nanoparticles (NPs) are being utilized in various applications to improve the quality of products. However, safety or toxicity information of dolomite NPs is largely lacking. This study evaluated the cytotoxicity of dolomite NPs in two widely used in vitro cell culture models: human airway epithelial (HEp2) and human liver (HepG2) cells. Concentration-dependent decreased cell viability and damaged cell membrane integrity revealed the cytotoxicity of dolomite NPs. We further observed that dolomite NPs induce oxidative stress in a concentration-dependent manner, as indicated by depletion of glutathione and induction of reactive oxygen species (ROS) and lipid peroxidation. Quantitative real-time PCR data demonstrated that the mRNA level of tumor suppressor gene p53 and apoptotic genes (bax, CASP3 and CASP9) were up-regulated whereas the anti-apoptotic gene bcl-2 was down-regulated in HEp2 and HepG2 cells exposed to dolomite NPs. Moreover, the activity of apoptotic enzymes (caspase-3 and caspase-9) was also higher in both kinds of cells treated with dolomite NPs. It is also worth mentioning that HEp2 cells seem to be marginally more susceptible to dolomite NPs exposure than HepG2 cells. Cytotoxicity induced by dolomite NPs was efficiently prevented by N-acetyl cysteine treatment, which suggests that oxidative stress is primarily responsible for the cytotoxicity of dolomite NPs in both HEp2 and HepG2 cells. Toxicity mechanisms of dolomite NPs warrant further investigations at the in vivo level.

  9. Efficient Handling of Lock Hand-off in DSM Multiprocessors with Buffering Coherence Controllers

    Institute of Scientific and Technical Information of China (English)

    Benjamín Sahelices; Agustín de Dios; Pablo Ibá(n)ez; Víctor Vi(n)als-Yúfera; José María Llabería

    2012-01-01

    Synchronization in parallel programs is a major performance bottleneck in multiprocessor systems.Shared data is protected by locks and a lot of time is spent on the competition arising at the lock hand-off.In order to be serialized,requests to the same cache line can either be bounced (NACKed) or buffered in the coherence controller.In this paper,we focus mainly on systems whose coherence controllers buffer requests.In a lock hand-off,a burst of requests to the same line arrive at the coherence controller.During lock hand-off only the requests from the winning processor contribute to progress of the computation,since the winning processor is the only one that will advance the work.This key observation leads us to propose a hardware mechanism we call request bypassing,which allows requests from the winning processor to bypass the requests buffered in the coherence controller keeping the lock line.We present an inexpensive implementation of request bypassing that reduces the time spent on all the execution phases of a critical section (acquiring the lock,accessing shared data,and releasing the lock) and which,as a consequence,speeds up the whole parallel computation.This mechanism requires neither compiler or programmer support nor ISA or coherence protocol changes.By simulating a 32-processor system,we show that using request bypassing does not degrade but rather improves performance in three applications with low synchronization rates,while in those having a large amount of synchronization activity (the remaining four),we see reductions in execution time and in lock stall time ranging from 14% to 39% and from 52% to 71%,respectively.We compare request bypassing with a previously proposed technique called read combining and with a system that bounces requests,observing a significantly lower execution time with the bypassing scheme.Finally,we analyze the sensitivity of our results to some key hardware and software parameters.

  10. Shillapoo Wildlife Area 2007 Follow-up HEP Report.

    Energy Technology Data Exchange (ETDEWEB)

    Ashley, Paul R.

    2008-03-01

    In April and May 2007 the Regional HEP Team (RHT) conducted a follow-up HEP analysis on the Egger (612 acres) and Herzog (210 acres) parcels located at the north end of the Shillapoo Wildlife Area. The Egger and Herzog parcels have been managed with Bonneville Power Administration funds since acquired in 1998 and 2001 respectively. Slightly more than 936 habitat units (936.47) or 1.14 HUs per acre was generated as an outcome of the 2007 follow-up HEP surveys. Results included 1.65 black-capped chickadee HUs, 280.57 great blue heron HUs, 581.45 Canada goose HUs, 40 mallard HUs, and 32.80 mink HUs. Introduction A follow-up Habitat Evaluation Procedures (HEP) (USFWS 1980) analysis was conducted by the Columbia Basin Fish and Wildlife Authority's (CBFWA) Regional HEP Team (RHT) during April and May 2007 to document changes in habitat quality and to determine the number of habitat units (HUs) to credit Bonneville Power Administration (BPA) for providing operation and maintenance (O&M) funds since WDFW acquired the parcels. The 2007 follow-up HEP evaluation was limited to Shillapoo Wildlife Area (SWA) parcels purchased with Bonneville Power Administration funds. D. Budd (pers. comm.) reported WDFW purchased the 612 acre Egger Farms parcel on November 2, 1998 for $1,737,0001 and the 210 acre Herzog acquisition on June 21, 2001 for $500,000 with Memorandum of Agreement funds (BPA and WDFW 1996) as partial fulfillment of BPA's wildlife mitigation obligation for construction of Bonneville and John Day Dams (Rasmussen and Wright 1989). Anticipating the eventual acquisition of the Egger and Herzog properties, WDFW conducted HEP surveys on these lands in 1994 to determine the potential number of habitat units to be credited to BPA. As a result, HEP surveys and habitat unit calculations were completed as much as seven years prior to acquiring the sites. The term 'Shillapoo Wildlife Area' will be used to describe only the Herzog and Egger parcels in this

  11. HEP-FCE Working Group on Libraries and Tools

    CERN Document Server

    Borgland, Anders; Kirby, Michael; Patton, Simon; Potekhin, Maxim; Viren, Brett; Yanny, Brian

    2015-01-01

    This is a report from the Libraries and Tools Working Group of the High Energy Physics Forum for Computational Excellence. It presents the vision of the working group for how the HEP software community may organize and be supported in order to more efficiently share and develop common software libraries and tools across the world's diverse set of HEP experiments. It gives prioritized recommendations for achieving this goal and provides a survey of a select number of areas in the current HEP software library and tools landscape. The survey identifies aspects which support this goal and areas with opportunities for improvements. The survey covers event processing software frameworks, software development, data management, workflow and workload management, geometry information management and conditions databases.

  12. [Autoantibody detection by indirect immunofluorescence on HEp-2 cells].

    Science.gov (United States)

    Sack, U; Conrad, K; Csernok, E; Frank, I; Hiepe, F; Krieger, T; Kromminga, A; Landenberg, P von; Messer, G; Witte, T; Mierau, R

    2009-06-01

    Systemic autoimmune diseases are characterized by the presence of antinuclear autoantibodies (ANA). Diluted patient sera are typically used to screen for the presence of ANA by immunfluorescence microscopy with fixed HEp-2 cells. Despite high-quality test kits, reports of different laboratories frequently present controversial results. This article recommends unified processing and interpretation of HEp-2 based screening for autoantibodies. Suggestions are made for the selection of high-quality test kits, optimized processing and diagnostic procedures. In addition to a relevant clinical diagnosis and an experienced laboratory specialist, the following procedure is highly recommended to achieve good laboratory practice: Initial HEp-2 based screening by indirect immunofluorescence, starting with a 1:80 serum dilution, and evaluation in a bright fluorescence microscope, pathological values from a titer of 1:160 upwards, internal quality checks and unified interpretation. We aim to improve diagnosis and care of patients with autoimmune diseases as a central focus of the European Autoimmunity Standardization Initiative (EASI).

  13. Parallel implementation and evaluation of motion estimation system algorithms on a distributed memory multiprocessor using knowledge based mappings

    Science.gov (United States)

    Choudhary, Alok Nidhi; Leung, Mun K.; Huang, Thomas S.; Patel, Janak H.

    1989-01-01

    Several techniques to perform static and dynamic load balancing techniques for vision systems are presented. These techniques are novel in the sense that they capture the computational requirements of a task by examining the data when it is produced. Furthermore, they can be applied to many vision systems because many algorithms in different systems are either the same, or have similar computational characteristics. These techniques are evaluated by applying them on a parallel implementation of the algorithms in a motion estimation system on a hypercube multiprocessor system. The motion estimation system consists of the following steps: (1) extraction of features; (2) stereo match of images in one time instant; (3) time match of images from different time instants; (4) stereo match to compute final unambiguous points; and (5) computation of motion parameters. It is shown that the performance gains when these data decomposition and load balancing techniques are used are significant and the overhead of using these techniques is minimal.

  14. Encefalopatia hepática: estudo de 50 casos

    Directory of Open Access Journals (Sweden)

    Luiz Antonio de Lima Resende

    1984-12-01

    Full Text Available Os autores apresentam estudo retrospectivo de 50 pacientes com encefalopatia hepática atendidos no Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto a partir de 1959 e discutem os aspectos clínicos, laboratoriais e anátomo-patológicos. Expõem os diagnósticos das hepatopatias, os fatores precipitantes dos episódios de coma e pré-coma hepático e enfatizam o papel da gasometria arterial no estabelecimento do diagnóstico.

  15. Encefalopatía Hepática

    OpenAIRE

    Juan Carlos Restrepo Gutiérrez; Lorena Bejarano Pineda; Juan Pablo Londoño Múnera

    2008-01-01

    En pacientes con enfermedad hepática aguda o crónica la encefalopatía hepática es una complicación progresiva y reversible en su mayoría de veces, que puede reducir la sobrevida y la calidad de vida de quienes la presenten. Dentro de su patogénesis existen diferentes hipótesis entre las cuales la más aceptada ha sido la de la neurotoxicidad por amonio, que incluso podría explicar las otras hipótesis planteadas, como la del edema de los astrocitos, la toxicidad por manganeso, entre otras. La c...

  16. Ressecões hepáticas por videolaparoscopia

    OpenAIRE

    Herman,Paulo; Coelho,Fabricio Ferreira; Lupinacci, Renato Micelli; Perini, Marcos Vinicius; Marcel Autran C. Machado; D´Albuquerque,Luiz A. Carneiro; Cecconello,Ivan

    2009-01-01

    INTRODUÇÃO: As ressecções hepáticas representam umas das últimas fronteiras vencidas pela cirurgia videolaparoscópica. Apesar da complexidade do procedimento, da demanda de grande incorporação de tecnologia e necessidade de experiência em cirurgia hepática e laparoscópica, a indicação do método tem crescido de forma expressiva nos últimos anos. OBJETIVO: Realizar análise crítica do método, baseada nos trabalhos existentes na literatura, ressaltando o estado atual de suas indicações, exequibil...

  17. Encefalopatía Hepática

    OpenAIRE

    Juan Carlos Restrepo Gutiérrez; Lorena Bejarano Pineda; Juan Pablo Londoño Múnera

    2008-01-01

    En pacientes con enfermedad hepática aguda o crónica la encefalopatía hepática es una complicación progresiva y reversible en su mayoría de veces, que puede reducir la sobrevida y la calidad de vida de quienes la presenten. Dentro de su patogénesis existen diferentes hipótesis entre las cuales la más aceptada ha sido la de la neurotoxicidad por amonio, que incluso podría explicar las otras hipótesis planteadas, como la del edema de los astrocitos, la toxicidad por manganeso, entre otras. La c...

  18. INSPIRE - The Next-Generation HEP Information System

    CERN Document Server

    Holtkamp, Annette

    2010-01-01

    CERN, DESY, Fermilab and SLAC have joined forces to build INSPIRE, the next-generation HEP information platform offering innovative tools for information discovery and communication. Representing a natural community-based evolution of SPIRES, INSPIRE provides fast access to the entire body of HEP literature. As a subject repository it will host fulltexts of preprints, Open Access journal articles and supplementary material like conference slides and multimedia, enabling novel text- and data mining applications. In the spirit of Web2.0 INSPIRE will also supply tools for collaboration and user-enriched content.

  19. Hepatoma cell line HepG2.2.15 demonstrates distinct biological features compared with parental HepG2

    Institute of Scientific and Technical Information of China (English)

    Ran Zhao; Tian-Zhen Wang; Dan Kong; Lei Zhang; Hong-Xue Meng; Yang Jiang; Yi-Qi Wu; Zu-Xi Yu; Xiao-Ming Jin

    2011-01-01

    AIM: To investigate the biological features of hepatitis B virus (HBV)-transfected HepG2.2.15 cells. METHODS: The cell ultrastructure, cell cycle and apop-tosis, and the abilities of proliferation and invasion of HBV-transfected HepG2.2.15 and the parent HepG2 cells were examined by electron microscopy, flow cytometry, 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide and trans-well assay. Oncogenicity of the two cell lines was compared via subcutaneous injection and orthotopic injection or implantation in nude mice, and the pathological analysis of tumor formation was performed. Two cytoskeletal proteins were detected by Western blotting.RESULTS: Compared with HepG2 cells, HepG2.2.15 cells showed organelle degeneration and filopodia disappear-ance under electron microscope. HepG2.2.15 cells pro-liferated and migrated slowly in vitro, and hardly formed tumor and lung metastasis in nude mice. Flow cytom-etry showed that the majority of HepG2.2.15 cells were arrested in G1 phase, and apoptosis was minor in both cell lines. Furthermore, the levels of cytoskeletal pro-teins F-actin and Ezrin were decreased in HepG2.2.15 cells.CONCLUSION: HepG2.2.15 cells demonstrated a low-er proliferation and invasion ability than the HepG2 cells due to HBV transfection.

  20. Sensitivity of Hep G2 cells to Bacillus cereus emetic toxin.

    Science.gov (United States)

    Kamata, Yoichi; Kanno, Shinji; Mizutani, Noriko; Agata, Norio; Kawakami, Hiroshi; Sugiyama, Kei-ichi; Sugita-Konishi, Yoshiko

    2012-11-01

    We herein examined the sensitivity of Hep G2 human hepatoma cells to Bacillus cereus emetic toxin. Hep G2 cells were treated with the emetic toxin, and the cell shape was observed. The same experiments were performed for comparison purposes, using HEp-2 cells, which are currently used by most laboratories for a bioassay of the emetic toxin. Hep G2 cells showed clearer vacuolation in the cytosol within 2 hr and required a shorter incubation period than HEp-2 cells (10 hr). The number of vacuoles in the Hep G2 cells was greater, and the size of the vacuoles was larger than those observed in HEp-2 cells. The minimal concentration of the emetic toxin required to induce the vacuolation of Hep G2 cells was 0.04 ng/ml. The concentration for the HEp-2 cells was 1 ng/ml. These findings indicate that Hep G2 cells show higher sensitivity to the emetic toxin. Hep G2 cells may be superior to the currently used HEp-2 cells for the bioassay of the emetic toxin.

  1. Development of 3D integrated circuits for HEP

    Energy Technology Data Exchange (ETDEWEB)

    Yarema, R.; /Fermilab

    2006-09-01

    Three dimensional integrated circuits are well suited to improving circuit bandwidth and increasing effective circuit density. Recent advances in industry have made 3D integrated circuits an option for HEP. The 3D technology is discussed in this paper and several examples are shown. Design of a 3D demonstrator chip for the ILC is presented.

  2. A community Q&A for HEP Software and Computing ?

    CERN Document Server

    CERN. Geneva

    2016-01-01

    How often do you use StackOverflow or ServerFault to find information in your daily work? Would you be interested in a community Q&A site for HEP Software and Computing, for instance a dedicated StackExchange site? I looked into this question...

  3. INSPIRE: A new scientific information system for HEP

    Energy Technology Data Exchange (ETDEWEB)

    Ivanov, R; Raae, L, E-mail: Radoslav.Ivanov@cern.c, E-mail: Lars.Christian.Raae@cern.c [European Organization for Nuclear Research, CERN CH-1211, Geneva 23 (Switzerland)

    2010-04-01

    The status of high-energy physics (HEP) information systems has been jointly analyzed by the libraries of CERN, DESY, Fermilab and SLAC. As a result, the four laboratories have started the INSPIRE project - a new platform built by moving the successful SPIRES features and content, curated at DESY, Fermilab and SLAC, into the open-source CDS Invenio digital library software that was developed at CERN. INSPIRE will integrate current acquisition workflows and databases to host the entire body of the HEP literature (about one million records), aiming to become the reference HEP scientific information platform worldwide. It will provide users with fast access to full text journal articles and preprints, but also material such as conference slides and multimedia. INSPIRE will empower scientists with new tools to discover and access the results most relevant to their research, enable novel text- and data-mining applications, and deploy new metrics to assess the impact of articles and authors. In addition, it will introduce the 'Web 2.0' paradigm of user-enriched content in the domain of sciences, with community-based approaches to scientific publishing. INSPIRE represents a natural evolution of scholarly communication built on successful community-based information systems, and it provides a vision for information management in other fields of science. Inspired by the needs of HEP, we hope that the INSPIRE project will be inspiring for other communities.

  4. INSPIRE: A new scientific information system for HEP

    Science.gov (United States)

    Ivanov, R.; Raae, L.

    2010-04-01

    The status of high-energy physics (HEP) information systems has been jointly analyzed by the libraries of CERN, DESY, Fermilab and SLAC. As a result, the four laboratories have started the INSPIRE project - a new platform built by moving the successful SPIRES features and content, curated at DESY, Fermilab and SLAC, into the open-source CDS Invenio digital library software that was developed at CERN. INSPIRE will integrate current acquisition workflows and databases to host the entire body of the HEP literature (about one million records), aiming to become the reference HEP scientific information platform worldwide. It will provide users with fast access to full text journal articles and preprints, but also material such as conference slides and multimedia. INSPIRE will empower scientists with new tools to discover and access the results most relevant to their research, enable novel text- and data-mining applications, and deploy new metrics to assess the impact of articles and authors. In addition, it will introduce the "Web 2.0" paradigm of user-enriched content in the domain of sciences, with community-based approaches to scientific publishing. INSPIRE represents a natural evolution of scholarly communication built on successful community-based information systems, and it provides a vision for information management in other fields of science. Inspired by the needs of HEP, we hope that the INSPIRE project will be inspiring for other communities.

  5. Ressecção hepática com acesso glissoniano intra-hepático: modelo suíno para treinamento

    OpenAIRE

    Moura de Andrade Lima, Petrus

    2010-01-01

    As ressecções hepáticas são consideradas o único tratamento potencialmente curativo para tumores hepáticos primários e metastáticos, o que gerou um aumento no número de indicações de ressecções hepáticas. Assim, há a necessidade de técnicas que propiciem uma maior preservação de parênquima hepático, bem como maior segurança na realização dessas cirurgias. O acesso glissoniano intra-hepático destaca-se como uma técnica de abordagem aos pedículos intra-hepáticos que cumpre tai...

  6. Chemically induced hepatotoxicity in human stem cell-induced hepatocytes compared with primary hepatocytes and HepG2.

    Science.gov (United States)

    Kang, Seok-Jin; Lee, Hyuk-Mi; Park, Young-Il; Yi, Hee; Lee, Hunjoo; So, ByungJae; Song, Jae-Young; Kang, Hwan-Goo

    2016-10-01

    Stem cell-induced hepatocytes (SC-iHeps) have been suggested as a valuable model for evaluating drug toxicology. Here, human-induced pluripotent stem cells (QIA7) and embryonic stem cells (WA01) were differentiated into hepatocytes, and the hepatotoxic effects of acetaminophen (AAP) and aflatoxin B1 (AFB1) were compared with primary hepatocytes (p-Heps) and HepG2. In a cytotoxicity assay, the IC50 of SC-iHeps was similar to that in p-Heps and HepG2 in the AAP groups but different from that in p-Heps of the AFB1 groups. In a multi-parameter assay, phenotypic changes in mitochondrial membrane potential, calcium influx and oxidative stress were similar between QIA7-iHeps and p-Heps following AAP and AFB1 treatment but relatively low in WA01-iHeps and HepG2. Most hepatic functional markers (hepatocyte-specific genes, albumin/urea secretion, and the CYP450 enzyme activity) were decreased in a dose-dependent manner following AAP and AFB1 treatment in SC-iHeps and p-Heps but not in HepG2. Regarding CYP450 inhibition, the cell viability of SC-iHeps and p-Heps was increased by ketoconazole, a CYP3A4 inhibitor. Collectively, SC-iHeps and p-Heps showed similar cytotoxicity and hepatocyte functional effects for AAP and AFB1 compared with HepG2. Therefore, SC-iHeps have phenotypic characteristics and sensitivity to cytotoxic chemicals that are more similar to p-Heps than to HepG2 cells.

  7. [Enhanced chemosensitivity of Hep-2 through down-regulating expression of SOX2 by RNAi].

    Science.gov (United States)

    Yang, Ning; Hui, Lian; Yang, Huijun; Jiang, Xuejun

    2014-08-01

    To investigate the effect of SOX2 on chemotherapy sensitivity of human laryngeal epithelial cells Hep-2. We designed and synthesized RNAis for silencing the expression of SOX2 in Hep-2 cells and selected the most effective RNAi by Western blot analysis. Then the recombinant plasmids of pGCsi-H1-SOX2 and pGCsi-H1-NC were constructed and transfected into Hep-2 cells to build cell lines of psiSOX2-Hep-2 and psiNC-Hep-2. CCK-8 assay had been used to test the sensitivity of Hep-2 cells to 5-FU and PTX after silencing SOX2 expression. Hoechst staining had been used to exam the changes of Hep-2 cells apoptosis treatment by 5-FU and PTX after silencing SOX2 expression. Furthermore, the changes of apoptosis-related genes expressions were detected by Western blotting. The cell lines of psiSOX2-Hep-2 and psiNC-Hep-2 were successfully established, and the expression of SOX2 protein was decreased 78% in psiSOX2-Hep-2 cells compared with psiNC-Hep-2 cells. After reducing SOX2 expression, the sensitivity of Hep-2 cells to 5-FU and PTX were increased and the IC50 values for 48 h were decreased to 8.12 μg/ml and 5.16 μg/ml. Meanwhile, the apoptosis rate and the expression of apoptotic gene Bax and cleaved caspase-3 expression were dramatically increased and anti-apoptotic genes survivin and Bcl-2 were significantly decreased in psiSOX2-Hep-2 cells compared with psiNC-Hep-2 cells. Down-regulating the protein expression of SOX2 by RNAi will significantly enhance the sensitivity of human laryngeal epithelial cells Hep-2 to 5-FU and PTX.

  8. Habitat Evaluation Procedures (HEP) Report; Carey Creek, Technical Report 2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-05-01

    In August 2002, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Carey Creek property, an acquisition completed by the Kalispel Tribe of Indians in December 2001. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Carey Creek Project provides a total of 172.95 Habitat Units (HUs) for the species evaluated. Conifer forest habitat provides 4.91 HUs for bald eagle, black-capped chickadee, and white-tailed deer. Forested wetlands provide 52.68 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Scrub-shrub wetlands provide 2.82 HUs for mallard, yellow warbler and white-tailed deer. Wet meadow and grassland meadow provide 98.13 HUs for mallard and Canada goose. Emergent wetlands provide 11.53 HUs for mallard, muskrat, and Canada goose. Open water provides 2.88 HUs for Canada goose, mallard, and muskrat. The objective of using HEP at the Carey Creek Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  9. Habitat Evaluation Procedures (HEP) Report; Gamblin Lake, Technical Report 2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-05-01

    On August 12, 2003, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Gamblin Lake property, an acquisition completed by the Kalispel Tribe of Indians in December 2002. Evaluation species and appropriate models include bald eagle, black-capped chickadee, mallard, muskrat, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Gamblin Lake Project provides a total of 273.28 Habitat Units (HUs) for the species evaluated. Conifer forest habitat provides 127.92 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Forested wetland habitat provides 21.06 HUs for bald eagle, black-caped chickadee, mallard, and white-tailed deer. Wet meadow provides 78.05 HUs for Canada goose and mallard. Emergent wetland habitat provides 46.25 HUs for mallard, muskrat, and Canada goose. The objective of using HEP at the Gamblin Lake Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  10. Habitat Evaluation Procedures (HEP) Report; Beaver Lake, Technical Report 2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-05-01

    On August 14, 2003, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Beaver Lake property, an acquisition completed by the Kalispel Tribe of Indians in November 2002. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, muskrat, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Beaver Lake Project provides a total of 232.26 Habitat Units (HUs) for the species evaluated. Conifer forest habitat provides 136.58 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Forested wetland habitat provides 20.02 HUs for bald eagle, black-caped chickadee, mallard, and white-tailed deer. Scrub-shrub wetland habitat provides 7.67 HUs for mallard, yellow warbler, and white-tailed deer. Grassland meadow provides 22.69 HUs for Canada goose and mallard. Emergent wetlands provide 35.04 HUs for Canada goose, mallard, and muskrat. Open water provided 10.26 HUs for Canada goose, mallard, and muskrat. The objective of using HEP at the Beaver Lake Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  11. Apoptosis in HEp-2 cells infected with Ureaplasma diversum.

    Science.gov (United States)

    Amorim, Aline Teixeira; Marques, Lucas Miranda; Santos, Angelita Maria Oliveira Gusmão; Martins, Hellen Braga; Barbosa, Maysa Santos; Rezende, Izadora Souza; Andrade, Ewerton Ferraz; Campos, Guilherme Barreto; Lobão, Tássia Neves; Cortez, Beatriz Araujo; Monezi, Telma Alvez; Machado-Santelli, Glaucia Maria; Timenetsky, Jorge

    2014-09-04

    Bacterial pathogens have many strategies for infecting and persisting in host cells. Adhesion, invasion and intracellular life are important features in the biology of mollicutes. The intracellular location of Ureaplasma diversum may trigger disturbances in the host cell. This includes activation or inhibition of pro and anti-apoptotic factors, which facilitate the development of host damage. The aim of the present study was to associate U. diversum infection in HEp-2 cells and apoptosis induction. Cells were infected for 72hs with four U. diversum clinical isolates and an ATCC strain. The U. diversum invasion was analyzed by Confocal Laser Scanning Microscopy and gentamicin invasion assay. The apoptosis was evaluated using pro-apoptotic and anti-apoptotic gene expression, and FITC Annexin V/Dead Cell Apoptosis Kit. The number of internalized ureaplasma in HEp-2 cells increased significantly throughout the infection. The flow cytometry analysis with fluorochromes to detect membrane depolarization and gene expression for caspase 2, 3 and 9 increased in infected cells after 24 hours. However, after 72 hours a considerable decrease of apoptotic cells was observed. The data suggests that apoptosis may be initially induced by some isolates in association with HEp-2 cells, but over time, there was no evidence of apoptosis in the presence of ureaplasma and HEp-2 cells. The initial increase and then decrease in apoptosis could be related to bacterial pathogen-associated molecular pattern (PAMPS). Moreover, the isolates of U. diversum presented differences in the studied parameters for apoptosis. It was also observed that the amount of microorganisms was not proportional to the induction of apoptosis in HEp-2 cells.

  12. Comparative ultrastructure analysis of radiation-induced radioresistant laryngeal cancer hep-2 cell line.

    Science.gov (United States)

    Yang, Bo; Tang, Fuqiu; Zhang, Bicheng; Zhao, Yong; Ding, Shifang; Rao, Zhiguo

    2014-08-01

    Radioresistance is one of the main reasons for the failure of radiotherapy in laryngeal cancer. However, the mechanisms of radioresistance of tumor cells have remained elusive. This study was conducted to identify the ultrastructural changes of radiation-induced radioresistant laryngeal cancer hep-2 cell line. First, a radioresistant hep-2R cell line was generated after prolonged exposure to γ-rays for 60 Gy (6 Gy/day, 2 days/week) and was confirmed by clonogenic assay. Next, the ultrastructural differences between hep-2R cells and hep-2 cells were compared by transmission electron microscopy. Finally, the results showed that hep-2R cells showed significant resistance to radiation compared with parental hep-2 cells. Increased cell nucleus atypia, more rough endoplasmic reticulum and less mitochondria were observed in hep-2R cells. The amount of microvilli of hep-2R was similar to hep-2 cell. In summary, these ultrastructural differences revealed the morphological mechanism that hep-2R cells had stronger radioresistance than hep-2 cells.

  13. Effects of PRELI in Oxidative-Stressed HepG2 Cells.

    Science.gov (United States)

    Kim, Bo Yong; Cho, Min Ho; Kim, Kyung Joo; Cho, Kyung Jin; Kim, Suhng Wook; Kim, Hyun Sook; Jung, Woon-Won; Lee, Boo Hyung; Lee, Bong Hee; Lee, Seung Gwan

    2015-01-01

    Protein of relevant evolutionary and lymphoid interest (PRELI) is known for preventing apoptosis by mediating intramitochondrial transport of phosphatidic acid. However, the role of PRELI remains unclear. This study has demonstrated functions of PRELI through PRELI-knockdown in hepatocellular carcinoma (HepG2) cells exposed to oxidative stress by hydrogen peroxide. Results show that PRELI has three functions in HepG2 cells with regard to oxidative stress. First, PRELI affects expressional regulation of SOD-1 and caspase-3 genes in HepG2 cells. PRELI knockdown HepG2 cells have shown up-regulation of caspase-3 and down-regulation of SOD-1. Second, PRELI suppresses mitochondrial apoptosis in HepG2 cells. Fluorescence intensity related to mitochondrial apoptosis in PRELI-knockdown HepG2 cells increased more than two-fold compared to normal HepG2 cells. Third, PRELI suppresses senescence of HepG2 cells with oxidative stress. PRELI knockdown HepG2 cells showed higher levels of senescence than normal HepG2 cells. These results suggest that PRELI is a crucial protein in the suppression of apoptosis in HepG2 cells in response to oxidative stress. © 2015 by the Association of Clinical Scientists, Inc.

  14. [The vitro research of effects of Beclin1 on paclitaxel-sensitivity in laryngeal carcinoma cell Hep-2].

    Science.gov (United States)

    Deng, Xiaocong; Yang, Xinming; Li, Shisheng

    2015-01-01

    Background: We detect the effects of Beclinl on paclitaxel-sensitivity in laryngeal carcinoma cell. This study used Hep-2, Hep-2-pcDNA3. 1, Hep-2-Beclinl as invitro model. The effect of paclitaxel on the proliferation and cell apoptosis of laryngeal cancer cell lines was evaluated by MTT assay and flow cytometry. The protein expression level of Akt and p-Akt was detected by Western blot. Result: After treated by paclitaxel, the inhibition rate was significantly higher in Hep-2-Beclin cells than in Hep-2-pcDNA3. 1 cells and Hep-2 cells (PHep-2, Hep-2-pcDNA3. 1, Hep-2-Beclinl were (23. 75 ± 2 3. 77) %, (21. 25 ± 4. 92) %, (32. 50 ± 5. 97) %, respectively. After dealing with 20µg/L paclitaxel, the apoptosis rate in Hep-2, Hep-2-pcDNA3. 1, Hep-2-Beclinl were (38. 75 ± 4. 79) %, (38. 75±6. 55) %, (50. 00±7. 26) %, respectively. Paclitaxel-induced apoptosis was higher in Hep-2-Beclin cells than in Hep-2-pcDNA3. 1 cells and Hep-2 cells (PHep-2-Beclin cells was lower than in Hep-2-pcDNA3. 1 cells and Hep-2 cells (P0. 05). Beclinl enhances paclitaxel-sensitivity by inhibition of PI3K/Akt pathway.

  15. Crystal structure of Pedobacter heparinus heparin lyase Hep III with the active site in a deep cleft.

    Science.gov (United States)

    Hashimoto, Wataru; Maruyama, Yukie; Nakamichi, Yusuke; Mikami, Bunzo; Murata, Kousaku

    2014-02-04

    Pedobacter heparinus (formerly known as Flavobacterium heparinum) is a typical glycosaminoglycan-degrading bacterium that produces three heparin lyases, Hep I, Hep II, and Hep III, which act on heparins with 1,4-glycoside bonds between uronate and amino sugar residues. Being different from Hep I and Hep II, Hep III is specific for heparan sulfate. Here we describe the crystal structure of Hep III with the active site located in a deep cleft. The X-ray crystallographic structure of Hep III was determined at 2.20 Å resolution using single-wavelength anomalous diffraction. This enzyme comprised an N-terminal α/α-barrel domain and a C-terminal antiparallel β-sheet domain as its basic scaffold. Overall structures of Hep II and Hep III were similar, although Hep III exhibited an open form compared with the closed form of Hep II. Superimposition of Hep III and heparin tetrasaccharide-bound Hep II suggested that an active site of Hep III was located in the deep cleft at the interface between its two domains. Three mutants (N240A, Y294F, and H424A) with mutations at the active site had significantly reduced enzyme activity. This is the first report of the structure-function relationship of P. heparinus Hep III.

  16. Encefalopatía Hepática

    Directory of Open Access Journals (Sweden)

    Juan Carlos Restrepo Gutiérrez

    2008-12-01

    Full Text Available En pacientes con enfermedad hepática aguda o crónica la encefalopatía hepática es una complicación progresiva y reversible en su mayoría de veces, que puede reducir la sobrevida y la calidad de vida de quienes la presenten. Dentro de su patogénesis existen diferentes hipótesis entre las cuales la más aceptada ha sido la de la neurotoxicidad por amonio, que incluso podría explicar las otras hipótesis planteadas, como la del edema de los astrocitos, la toxicidad por manganeso, entre otras. La clasificación actual de la encefalopatía hepática se propuso en el congreso mundial de Gastroenterología en 1998 y se basa en la naturaleza de la disfunción hepática, duración y características de las manifestaciones neurológicas. Para su diagnostico se requiere de un buen reconocimiento clínico puesto que es principalmente de exclusión; sin embargo actualmente se cuenta con los criterios de West Haven para clasificar la severidad de su presentación. En este síndrome el tratamiento comprende diferentes elementos –como la dieta proteica, disacáridos no absorbibles y terapia antibiótica, que tienen como finalidad la resolución de las manifestaciones y mejorar la calidad de vida de los pacientes, aunque sin dejar de lado que tratar los factores precipitantes son la principal medida terapéutica para la encefalopatía hepática. El objetivo de este artículo es revisar los últimos conceptos de la encefalopatía hepática; con especial énfasis en su patogénesis, clasificación, diagnostico y tratamiento.

  17. Towards Provenance and Traceability in CRISTAL for HEP

    CERN Document Server

    Shamdasani, Jetendr; McClatchey, Richard

    2014-01-01

    This paper discusses the CRISTAL object lifecycle management system and its use in provenance data management and the traceability of system events. This software was initially used to capture the construction and calibration of the CMS ECAL detector at CERN for later use by physicists in their data analysis. Some further uses of CRISTAL in different projects (CMS, neuGRID and N4U) are presented as examples of its flexible data model. From these examples, applications are drawn for the High Energy Physics domain and some initial ideas for its use in data preservation HEP are outlined in detail in this paper. Currently investigations are underway to gauge the feasibility of using the N4U Analysis Service or a derivative of it to address the requirements of data and analysis logging and provenance capture within the HEP long term data analysis environment.

  18. Onfalopileflebitis y absceso hepático neonatal

    OpenAIRE

    Carlos Baeza-Herrera; Perla López-Medina; Heladio Marino Nájera-Garduño; Bruno Adrián Martínez-Leo

    2015-01-01

    La onfalopileflebitis y el absceso hepático en neonatos son raros y se asocian, en la mayoría de las ocasiones, con infecciones por Staphylococcus epidermidis y como complicación de la cateterización venosa umbilical. La manifestación única es una infección sistémica e implica dificultades diagnósticas. Presentamos los hallazgos clínicos y quirúrgicos de un recién nacido masculino de 12 días con onfalopileflebitis y absceso hepático asociados con cateterización de la vena umbilical....

  19. docker & HEP: Containerization of applications for development, distribution and preservation

    Science.gov (United States)

    Binet, S.; Couturier, B.

    2015-12-01

    HEP software stacks are not shallow. Indeed, HEP experiments’ software is usually many applications in one (reconstruction, simulation, analysis,...) and thus require many libraries - developed in-house or by third parties - to be properly compiled and installed. Moreover, because of resource constraints, experiments’ software is usually installed, tested, validated and deployed on a very narrow set of platforms, architectures, toolchains and operating systems. As a consequence, bootstrapping a software environment on a developer machine or deploying the software on production or user machines is usually perceived as tedious and iterative work, especially when one wants the native performances of bare metal. Docker containers provide an interesting avenue for packaging applications and development environment, relying on the Linux kernel capabilities for process isolation, adding git-like capabilities to the filesystem layer and providing (close to) native CPU, memory and I/O performances.

  20. An Object-oriented minimization package for HEP

    Energy Technology Data Exchange (ETDEWEB)

    Mark S Fischler and David Sachs

    2003-07-02

    A portion of the HEP community has perceived the need for a minimization package written in C++ and taking advantage of the Object-Oriented nature of that language. To be acceptable for HEP, such a package must at least encompass all the capabilities of Minuit. Aside from the slight plus of not relying on outside Fortran compilation, the advantages that a C++ package based on O-O design would confer over the multitude of available C++ Minuit-wrappers include: Easier extensibility to different algorithms and forms of constraints; and usage modes which would not be available in the global-common-based Minuit design. An example of the latter is a job pursuing two ongoing minimization problems simultaneously. We discuss the design and implementation of such a package, which extends Minuit only in minor ways but which greatly diminishes the programming effort (if not the algorithm thought) needed to make more significant extensions.

  1. Onfalopileflebitis y absceso hepático neonatal

    Directory of Open Access Journals (Sweden)

    Carlos Baeza-Herrera

    2015-05-01

    Full Text Available La onfalopileflebitis y el absceso hepático en neonatos son raros y se asocian, en la mayoría de las ocasiones, con infecciones por Staphylococcus epidermidis y como complicación de la cateterización venosa umbilical. La manifestación única es una infección sistémica e implica dificultades diagnósticas. Presentamos los hallazgos clínicos y quirúrgicos de un recién nacido masculino de 12 días con onfalopileflebitis y absceso hepático asociados con cateterización de la vena umbilical.

  2. docker & HEP : containerization of applications for development, distribution and preservation

    CERN Document Server

    Binet, Sebastien

    2015-01-01

    HEP software stacks are not shallow. Indeed, HEP experiments' software are usually many applications in one (reconstruction, simulation, analysis, ...) and thus require many libraries - developed in-house or by third parties - to be properly compiled and installed. Moreover, because of resource constraints, experiments' software is usually installed, tested, validated and deployed on a very narrow set of platforms, architectures, toolchains and operating systems. As a consequence, bootstrapping a software environment on a developer machine or deploying the software on production or user machines is usually perceived as tedious and iterative work, especially when one wants the native performances of bare metal. `Docker` containers provide an interesting avenue for packaging applications and development environment, relying on the Linux kernel capabilities for process isolation, adding "git"-like capabilities to the filesystem layer and providing (close to) native CPU, memory and I/O performances. This paper wi...

  3. A Comprehensive Analysis of Impact of HEP/CAMP Program Participation. HEP/CAMP National Evaluation Project. Research Report No. 3.

    Science.gov (United States)

    Riley, Gary L.

    The report is a comprehensive presentation of High School Equivalency Programs (HEP) and College Assistance for Migrants Programs (CAMP) National Evaluation Project findings with particular emphasis on determining the accumulative educational and career impacts of having participated in a HEP or CAMP program. Part 1 provides an overview of the…

  4. White Paper on DOE-HEP Accelerator Modeling Science Activities

    CERN Document Server

    Vay, Jean-Luc; Koniges, Alice; Friedman, Alex; Grote, David P; Bruhwiler, David L

    2013-01-01

    Toward the goal of maximizing the impact of computer modeling on the design of future particle accelerators and the development of new accelerator techniques & technologies, this white paper presents the rationale for: (a) strengthening and expanding programmatic activities in accelerator modeling science within the Department of Energy (DOE) Office of High Energy Physics (HEP) and (b) increasing the community-wide coordination and integration of code development.

  5. Interfacing HepMC with Alice Analysis Framework

    CERN Document Server

    Thorsbro, Brian Peter

    2014-01-01

    An interface is implemented, which injects data in a specific format called HepMC from Monte Carlo event generators into the simulation and reconstruction environment of the ALICE experiment, called ``AliRoot''. The interface can both be used in a stand alone version to analyse output from Monte Carlo event generators, or it can be used on the grid to run large scale productions in the ALICE simulation and reconstrunction environment.

  6. [Observation of radiobiological characteristics in a HepG2 cell line with mitochondrial DNA deletion].

    Science.gov (United States)

    Sun, Hengwen; Pan, Yi; Zeng, Zijun; Fang, Liangyi; Zhang, Hongdan; Xie, Songxi; Li, Weixiong; Xu, Jiabin

    2015-06-01

    To study the radiobiological characteristics of a HepG2 cell line with mitochondrial DNA (mtDNA) deletion. HepG2 cells were cultured in a medium containing ethidium bromide, acetylformic acid and uracil. The HepG2 cell line with mtDNA deletion (ρ(0)HepG2 cells) were acquired after 30 subcultures by limited dilution cloning. The cell survival was then observed in the absence of acetylformic acid and uracil, and the total mtDNA deletion in the cells was confirmed by PCR. The radiosensitivity of HepG2 and ρ(0)HepG2 cells was evaluated by exposure to gradient doses of 6 MV X ray irradiation. The cell apoptosis was assessed following a 2 Gy X-ray exposure with Hochest33342 staining, and the invasiveness of ρ(0)HepG2 cells was measured by Transwell assay. HepG2 cells could survive 30 subcultures in the presence of ethidium bromide, and massive cell death occurred after removal of acetylformic acid and uracil from the medium. PCR confirmed total mtDNA deletion from ρ(0)HepG2 cells, whose α/β value was significantly lower than that of HepG2 cells. ρ(0)Hep-G2 cells showed an obviously lowered cell apoptosis rate following X-ray exposure with enhanced cell invasiveness. HepG2 cells can be induced by ethidium bromide into ρ(0)HepG2 cells with an increased radiation resistance, anti-apoptosis ability and cell invasiveness.

  7. HEP-FCE Working Group on Libraries and Tools

    Energy Technology Data Exchange (ETDEWEB)

    Borgland, Anders [SLAC National Accelerator Lab., Menlo Park, CA (United States); Elmer, Peter [Princeton Plasma Physics Lab. (PPPL), Princeton, NJ (United States); Kirby, Michael [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Patton, Simon [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Potekhin, Maxim [Brookhaven National Lab. (BNL), Upton, NY (United States); Viren, Brett [Brookhaven National Lab. (BNL), Upton, NY (United States); Yanny, Brian [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States)

    2014-12-19

    The High-Energy Physics Forum for Computational Excellence (HEP-FCE) was formed by the Department of Energy as a follow-up to a recent report from the Topical Panel on Computing[1] and the associated P5 recommendation[2]. It is a pilot project distributed across the DOE Labs. During this initial incubation period the Forum is to develop a plan for a robust, long-term organization structure and a functioning web presence for forum activities and outreach, and a study of hardware and software needs across the HEP program. In the following sections we give this working group’s “vision” for aspects and qualities we wish to see in a future HEP-FCE. We then give a prioritized list of technical activities with suggested scoping and deliverables that can be expected to provide cross-experiment benefits. The remaining bulk of the report gives a technical survey of some specific “areas of opportunity” for cross-experiment benefit in the realm of software libs/tools. This survey serves as support for the vision and prioritized list. For each area we describe the ways that cross-experiment benefit is achieved today, as well as describe known failings or pitfalls where such benefit has failed to be achieved and which should be avoided in the future. For both cases, we try to give concrete examples. Each area then ends with an examination of what opportunities exist for improvements in that particular area.

  8. Pseudotumor inflamatorio hepático linfoplasmocítico

    Directory of Open Access Journals (Sweden)

    E. Valdivielso Córtazar

    Full Text Available Presentamos el caso de una mujer de mediana edad con antecedentes de colecistectomía y varios episodios de coledocolitiasis residual resueltos endoscópicamente. Acude al servicio de Urgencias por un nuevo cuadro de dolor abdominal y alteración de enzimas hepáticas, apreciándose en las pruebas de imagen lesiones sugestivas de abscesos hepáticos sin poder descartarse un origen maligno. Dada esta duda se decide realizar una biopsia con aguja gruesa llegando al diagnóstico de pseudotumor inflamatorio hepático relacionada con la enfermedad por IgG4. Ésta es una entidad infrecuente pero que debe ser tenida en cuenta debido a que, a diferencia de la patología maligna, que es el principal diagnóstico diferencial, su comportamiento es benigno, con buena evolución con tratamiento médico. Por ello es vital un adecuado diagnóstico para evitar procedimientos diagnóstico-terapéuticos agresivos.

  9. INSPIRE: a new scientific information system for HEP

    CERN Multimedia

    Ivanov, R

    2009-01-01

    The status of high-energy physics (HEP) information systems has been jointly analyzed by the libraries of CERN, DESY, Fermilab and SLAC. As a result, the four laboratories have started the INSPIRE project – a new platform built by moving the successful SPIRES features and content, curated at DESY, Fermilab and SLAC, into the open-source CDS Invenio digital library software that was developed at CERN. INSPIRE will integrate present acquisition workflows and databases to host the entire body of the HEP literature (about one million records), aiming to become the reference HEP scientific information platform worldwide. It will provide users with fast access to full-text journal articles and preprints, but also material such as conference slides and multimedia. INSPIRE will empower scientists with new tools to discover and access the results most relevant to their research, enable novel text- and data-mining applications, and deploy new metrics to assess the impact of articles and authors. In addition, it will ...

  10. INSPIRE: a new scientific information system for HEP

    CERN Document Server

    Ivanov, R; CERN. Geneva. IT Department

    2010-01-01

    The status of high-energy physics (HEP) information systems has been jointly analyzed by the libraries of CERN, DESY, Fermilab and SLAC. As a result, the four laboratories have started the INSPIRE project – a new platform built by moving the successful SPIRES features and content, curated at DESY, Fermilab and SLAC, into the open-source CDS Invenio digital library software that was developed at CERN. INSPIRE will integrate current acquisition workflows and databases to host the entire body of the HEP literature (about one million records), aiming to become the reference HEP scientific information platform worldwide. It will provide users with fast access to full text journal articles and preprints, but also material such as conference slides and multimedia. INSPIRE will empower scientists with new tools to discover and access the results most relevant to their research, enable novel text- and data-mining applications, and deploy new metrics to assess the impact of articles and authors. In addition, it will ...

  11. miR-133a enhances the sensitivity of Hep-2 cells and vincristine-resistant Hep-2v cells to cisplatin by downregulating ATP7B expression.

    Science.gov (United States)

    Wang, Xurui; Zhu, Wei; Zhao, Xiaodong; Wang, Ping

    2016-06-01

    The expression levels of the copper transporter P-type adenosine triphosphatase (ATP7B) are known correlate with tumor cell sensitivity to cisplatin. However, the mechanisms underlying cisplatin resistance remained poorly understood. Therefore, in the present study, we treated Hep-2 cells and in-house-developed vincristine-resistant Hep-2v cells with 50, 100, or 200 µM cisplatin and assessed cell viability after 24 or 48 h. Hep-2v cells were shown to be resistant to 50-200 µM cisplatin. Furthermore, using immunofluorescence staining and western blot analysis, we noted that ATP7B, but not copper-transporting ATPase 1 (ATP7A), expression was significantly increased in Hep-2v cells, and this increase was maintained at a higher level compared with Hep-2 cells. As ATP7B is a target of microRNA 133a (miR‑133a), the ability of miR‑133a to influence cisplatin sensitivity in Hep-2v cells was then assessed by CCK-8 assay. We noted that miR‑133a expression was lower in both Hep-2 and Hep-2v cells compared with epithelial NP69 cells. Following treatment with 50 µM cisplatin, in Hep-2v cells expressing exogenous miR‑133a we noted reduced ATP7B expression, and these cells had a significantly lower survival rate compared with the control. The present study demonstrates that miR‑133a enhances the sensitivity of multidrug-resistant Hep-2v cells to cisplatin by downregulating ATP7B expression.

  12. Sodium cantharidinate induces HepG2 cell apoptosis through LC3 autophagy pathway.

    Science.gov (United States)

    Tao, Ran; Sun, Wen-Yi; Yu, De-Hai; Qiu, Wei; Yan, Wei-Qun; Ding, Yan-Hua; Wang, Guang-Yi; Li, Hai-Jun

    2017-08-01

    The function of sodium cantharidinate on inducing hepatocellular carcinoma cell apoptosis was investigated for the first time. Sodium cantharidinate inhibits HepG2 cell growth mainly by LC3 autophagy pathway. MTT results show that sodium cantharidinate effectively inhibits the proliferation of HepG2 cells in a dose- and time-dependent manner and induce cell apoptosis by caspase-3 activity. The further western blotting and FACS detection show that sodium cantharidinate initiates HepG2 cell autophagy program by LC3 pathway. Autophagy-specific inhibitor 3-MA reduce sodium cantharidinate-induced caspase-3 activity and HepG2 cell apoptosis. Silence of the LC3 gene in HepG2 cell lines also reduce sodium cantharidinate-induced cell apoptosis. Collectively, our data indicate that sodium cantharidinate induces HepG2 cell apoptosis through LC3 autophagy pathway. Sodium cantharidinate has potential for development as a new drug for treatment of human HCC.

  13. LanHEP - a package for automatic generation of Feynman rules in gauge models

    CERN Document Server

    Semenov, A Yu

    1996-01-01

    We consider the general problem of derivation of the Feynman rules for the matrix elements in momentum representation from the given Lagrangian in coordinate space invariant under the transformation of some gauge group. LanHEP package presented in this paper allows to define in a convenient way the gauge model Lagrangian in canonical form and then to generate automatically the Feynman rules that can be used in the following calculation of the physical processes by means of CompHEP package. The detailed description of LanHEP commands is given and several examples of LanHEP applications (QED, QCD, Standard Model in the t'Hooft-Feynman gauge) are presented.

  14. TMEM2 inhibits hepatitis B virus infection in HepG2 and HepG2.2.15 cells by activating the JAK-STAT signaling pathway.

    Science.gov (United States)

    Zhu, X; Xie, C; Li, Y-M; Huang, Z-L; Zhao, Q-Y; Hu, Z-X; Wang, P-P; Gu, Y-R; Gao, Z-L; Peng, L

    2016-06-02

    We have previously observed the downregulation of TMEM2 in the liver tissue of patients with chronic hepatitis B virus (HBV) infection and in HepG2.2.15 cells with HBV genomic DNA. In the present study, we investigated the role and mechanism of TMEM2 in HepG2 and HepG2.2.15 during HBV infection HepG2 and HepG2.2.15. HepG2 shTMEM2 cells with stable TMEM2 knockdown and HepG2 TMEM2 and HepG2.2.15 TMEM2 cells with stable TMEM2 overexpression were established using lentivirus vectors. We observed reduced expression of TMEM2 in HBV-infected liver tissues and HepG2.2.15 cells. HBsAg, HBcAg, HBV DNA, and HBV cccDNA levels were significantly increased in HepG2 shTMEM2 cells but decreased in HepG2 TMEM2 and HepG2.2.15 TMEM2 cells compared with naive HepG2 cells. On the basis of the western blotting results, the JAK-STAT signaling pathway was inhibited in HepG2 shTMEM2 cells but activated in HepG2 TMEM2 and HepG2.2.15 TMEM2 cells. In addition, reduced and increased expression of the antiviral proteins MxA and OAS1 was observed in TMEM2-silenced cells (HepG2 shTMEM2 cells) and TMEM2-overexpressing cells (HepG2 TMEM2 and HepG2.2.15 TMEM2 cells), respectively. The expression of Interferon regulatory factor 9 (IRF9) was not affected by TMEM2. However, we found that overexpression and knockdown of TMEM2, respectively, promoted and inhibited importation of IRF9 into nuclei. The luciferase reporter assay showed that IRF9 nuclear translocation affected interferon-stimulated response element activities. In addition, the inhibitory effects of TMEM2 on HBV infection in HepG2 shTMEM2 cells was significantly enhanced by pre-treatment with interferon but significantly inhibited in HepG2.2.15 TMEM2 cells by pre-treatment with JAK1 inhibitor. TMEM2 inhibits HBV infection in HepG2 and HepG2.2.15 by activating the JAK-STAT signaling pathway.

  15. TMEM2 inhibits hepatitis B virus infection in HepG2 and HepG2.2.15 cells by activating the JAK–STAT signaling pathway

    Science.gov (United States)

    Zhu, X; Xie, C; Li, Y-m; Huang, Z-l; Zhao, Q-y; Hu, Z-x; Wang, P-p; Gu, Y-r; Gao, Z-l; Peng, L

    2016-01-01

    We have previously observed the downregulation of TMEM2 in the liver tissue of patients with chronic hepatitis B virus (HBV) infection and in HepG2.2.15 cells with HBV genomic DNA. In the present study, we investigated the role and mechanism of TMEM2 in HepG2 and HepG2.2.15 during HBV infection HepG2 and HepG2.2.15. HepG2 shTMEM2 cells with stable TMEM2 knockdown and HepG2 TMEM2 and HepG2.2.15 TMEM2 cells with stable TMEM2 overexpression were established using lentivirus vectors. We observed reduced expression of TMEM2 in HBV-infected liver tissues and HepG2.2.15 cells. HBsAg, HBcAg, HBV DNA, and HBV cccDNA levels were significantly increased in HepG2 shTMEM2 cells but decreased in HepG2 TMEM2 and HepG2.2.15 TMEM2 cells compared with naive HepG2 cells. On the basis of the western blotting results, the JAK–STAT signaling pathway was inhibited in HepG2 shTMEM2 cells but activated in HepG2 TMEM2 and HepG2.2.15 TMEM2 cells. In addition, reduced and increased expression of the antiviral proteins MxA and OAS1 was observed in TMEM2-silenced cells (HepG2 shTMEM2 cells) and TMEM2-overexpressing cells (HepG2 TMEM2 and HepG2.2.15 TMEM2 cells), respectively. The expression of Interferon regulatory factor 9 (IRF9) was not affected by TMEM2. However, we found that overexpression and knockdown of TMEM2, respectively, promoted and inhibited importation of IRF9 into nuclei. The luciferase reporter assay showed that IRF9 nuclear translocation affected interferon-stimulated response element activities. In addition, the inhibitory effects of TMEM2 on HBV infection in HepG2 shTMEM2 cells was significantly enhanced by pre-treatment with interferon but significantly inhibited in HepG2.2.15 TMEM2 cells by pre-treatment with JAK1 inhibitor. TMEM2 inhibits HBV infection in HepG2 and HepG2.2.15 by activating the JAK–STAT signaling pathway. PMID:27253403

  16. Apoptosis and its pathway in X gene-transfected HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    Na Lin; Hong-Ying Chen; Dan Li; Sheng-Jun Zhang; Zhi-Xin Cheng; Xiao-Zhong Wang

    2005-01-01

    AIM: To investigate the effect of hepatitis B virus (HBV) X gene on apoptosis and expressions of apoptosis factors in X gene-transfected HepG2 cells.METHODS: The HBV X gene eukaryon expression vector pcDNVA3-Xwas transiently transfected into HepG2 cells by lipid-media transfection. Untransfected HepG2 and HepG2 transfected with pcDNA3 were used as controls. Expression of HBx in HepG2 was identified by PT-PCR. MTT and TUNEL were employed to measure proliferation and apoptosis of cells in.three groups. Semi-quantified RT-PCR was used to evaluate the expression levels of Fas/FasL, Bax/Bcl-xL,and c-myc in each group.RESULTS: HBV X gene was transfected into HepG2 cells successfully. RT-PCR showed that HBx was only expressed in HepG2/pcDNA3-X cells, but not expressed in HepG2 and HepG2/pcDNA3 cells. Analyzed by MTT, cell proliferation capacity was obviously lower in HepG2/pcDNA3-X cells (0.08910±0.003164) than in HepG2 (0.14410±0.004927)and HepG2/pcDNA3 cells (0.12150±0.007159) (P<0.05and P<0.01). Analyzed by TUNEL, cell apoptosis was much more in HepG2/pcDNA3-X cells (980/2 000) than HepG2 (420/2 000), HepG2/pcDNA3 cells (520/2 000) (P<0.05 and P<0.01). Evaluated by semi-quantified RT-PCR, the expression level of Fas/FasL was significantly higher in HepG2 cells transfected with HBx than in HepG2 and HepG2/pcDNA3 cells (P<0.05 and P<0.01). Bax/Bcl-xL expression level was also elevated in HepG2/pcDNA3-X cells (P<0.05and P<0.01). Expression of c-myc was markedly higher in HepG2/pcDNA3-X cells than in HepG2 and HepG2/pcDNA3 cells (P<0.05 and P<0.01).CONCLUSION: HBV X gene can impair cell proliferation capacity, improve cell apoptosis, and upregulate expression of apoptosis factors. The intervention of HBV X gene on the expression of apoptosis factors may be a possible mechanism responsible for the change in cell apoptosis and proliferation.

  17. ATLAS@Home: Harnessing Volunteer Computing for HEP

    CERN Document Server

    Cameron, David; The ATLAS collaboration

    2015-01-01

    The ATLAS collaboration has setup a volunteer computing project called ATLAS@home. Volunteers running Monte-Carlo simulation on their personal computer provide significant computing resources, but also belong to a community potentially interested in HEP. Four types of contributors have been identified, whose questions range from advanced technical details to the reason why simulation is needed, how Computing is organized and how it relates to society. The creation of relevant outreach material for simulation, event visualization and distributed production will be described, as well as lessons learned while interacting with the BOINC volunteers community.

  18. Angular distribution of 6He+p elastic scattering

    Institute of Scientific and Technical Information of China (English)

    LIU Xin; SU Jun; ZENG Sheng; YAN Sheng-Quan; LIAN Gang; HUANG Wu-Zhen; LIU Wei-Ping; WANG You-Bao; LI Zhi-Hong; JIN Sun-Jun; WANG Bao-Xiang; LI Yun-Ju; LI Er-Tao; BAI Xi-Xiang; GUO Bing

    2012-01-01

    The angular distribution of 1H(6He,p)6He elastic scattering has been measured at Ec.m.=4.3 MeV by using a thick-target inverse kinematic method.The experimental differential cross sections are reproduced by the distorted-wave Born approximation calculation utilizing the CH89 global optical potential parameter set.The real part of CH89 is reduced comparing with other potentials,which may be attributed to the couplings necessary for the weakly bound nuclei.

  19. Diverticulitis de la flexura hepática del colon

    OpenAIRE

    Pugliese,Alejandro; Viscido,Germán; PICÓN-MOLINA,HÉCTOR; Doniquian,Alejandro; Palencia,Rafael

    2013-01-01

    Introducción: La diverticulitis del colon derecho es una entidad poco frecuente en nuestro medio. Con relativa frecuencia, esta entidad es confundida con otros procesos abdominales, habitualmente apendicitis, cáncer de colon derecho o colecistitis aguda. No encontramos reportes específicos sobre su localización en la flexura hepática del colon. Material y Método: Varón 58 años quien consultó en urgencias por dolor abdominal y masa palpable en hipocondrio derecho. Se realiza TC abdominal que r...

  20. INSPIRE-HEP Ergys Dona Summer Student Report 2015

    CERN Document Server

    Dona, Ergys

    2015-01-01

    INSPIRE-HEP consists of millions of bibliographic records, while new records are continuously being submitted all the time. For indexing and organising reasons, it is very important that these records contain correct and accurate metadata. The maintenance of such a large number of records is error prone, time consuming and generally difficult if performed manually. This document describes the work carried out while developing parts of the Invenio-Checker module, a piece of software that tries to automate the tasks mentioned above, as well as the abilities obtained during the development.

  1. Cuidado nutricional de pacientes con cirrosis hepática

    OpenAIRE

    Magaly Aceves-Martins

    2014-01-01

    El hígado es un órgano con funciones importantes que influyen directamente en el estado nutricional y fisiológico de las personas. En presencia de cualquier enfermedad o lesión en dicho órgano, la cirrosis hepática representa la fase final. Quienes padecen esta patología tienen disminuida la utilización y capacidad de almacenamiento de carbohidratos, además de un aumento en el catabolismo de proteínas y grasas. Esta situación, sumada a una baja ingesta y mala absorción de nutrientes, provoca ...

  2. Quinoline-azetidinone hybrids: Synthesis and in vitro antiproliferation activity against Hep G2 and Hep 3B human cell lines.

    Science.gov (United States)

    Alegaon, S G; Parchure, P; Araujo, L D; Salve, P S; Alagawadi, K R; Jalalpure, S S; Kumbar, V M

    2017-04-01

    In search of new heterocyclic anticancer agents, a new quinoline-azetidinone hybrid template have been designed, synthesized and screened for their cytotoxic activity against human cancer cell lines such as Hep G2, and Hep 3B by the MTT assay and results were compared with paclitaxel, 5-fluorouracil and doxorubicin. Interestingly, some of the compounds were found significantly active against both cell lines. The compound 6f (IC50=0.04±0.01µM) exhibited potent antiproliferation activity against Hep G2 cell line, and 6j compound (IC50=0.66±0.01µM) demonstrated potent antiproliferation activity against Hep 3B cell line and provide to be more potent as cytotoxic agents than standard drugs. Morphological changes suggest the induction of apoptosis and describe the mechanism of action of these hybrid antitumor agents. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Big Data in HEP: A comprehensive use case study

    Energy Technology Data Exchange (ETDEWEB)

    Gutsche, Oliver [Fermilab; Cremonesi, Matteo [Fermilab; Elmer, Peter [Princeton U.; Jayatilaka, Bo [Fermilab; Kowalkowski, Jim [Fermilab; Pivarski, Jim [Princeton U.; Sehrish, Saba [Fermilab; Mantilla Surez, Cristina [Johns Hopkins U.; Svyatkovskiy, Alexey [Princeton U.; Tran, Nhan [Fermilab

    2017-01-31

    Experimental Particle Physics has been at the forefront of analyzing the worlds largest datasets for decades. The HEP community was the rst to develop suitable software and computing tools for this task. In recent times, new toolkits and systems collectively called Big Data technologies have emerged to support the analysis of Petabyte and Exabyte datasets in industry. While the principles of data analysis in HEP have not changed (ltering and transforming experiment-specic data formats), these new technologies use dierent approaches and promise a fresh look at analysis of very large datasets and could potentially reduce the time-to-physics with increased interactivity. In this talk, we present an active LHC Run 2 analysis, searching for dark matter with the CMS detector, as a testbed for Big Data technologies. We directly compare the traditional NTuple-based analysis with an equivalent analysis using Apache Spark on the Hadoop ecosystem and beyond. In both cases, we start the analysis with the ocial experiment data formats and produce publication physics plots. We will discuss advantages and disadvantages of each approach and give an outlook on further studies needed. 1.

  4. Inferring Toxicological Responses of HepG2 Cells from ...

    Science.gov (United States)

    Understanding the dynamic perturbation of cell states by chemicals can aid in for predicting their adverse effects. High-content imaging (HCI) was used to measure the state of HepG2 cells over three time points (1, 24, and 72 h) in response to 976 ToxCast chemicals for 10 different concentrations (0.39-200µM). Cell state was characterized by p53 activation (p53), c-Jun activation (SK), phospho-Histone H2A.x (OS), phospho-Histone H3 (MA), alpha tubulin (Mt), mitochondrial membrane potential (MMP), mitochondrial mass (MM), cell cycle arrest (CCA), nuclear size (NS) and cell number (CN). Dynamic cell state perturbations due to each chemical concentration were utilized to infer coarse-grained dependencies between cellular functions as Boolean networks (BNs). BNs were inferred from data in two steps. First, the data for each state variable were discretized into changed/active (> 1 standard deviation), and unchanged/inactive values. Second, the discretized data were used to learn Boolean relationships between variables. In our case, a BN is a wiring diagram between nodes that represent 10 previously described observable phenotypes. Functional relationships between nodes were represented as Boolean functions. We found that inferred BN show that HepG2 cell response is chemical and concentration specific. We observed presence of both point and cycle BN attractors. In addition, there are instances where Boolean functions were not found. We believe that this may be either

  5. Study on preliminary mechanism of apoptosis in HepG-2 by CSA

    Institute of Scientific and Technical Information of China (English)

    YU Lei; MU Ke; WANG Wei; CUI Rong-tian; JI Yu-bin; ZOU Xiang

    2008-01-01

    t Objective To study on the mechanism of killing and apoptosis inducing effect of total alkaloid in the CSA(Capparis spinosa L. alkaloid, CSA)on human hepatoearcinoma cell Line HepG-2. Methods The killing effect of the CSA on human hepatoeareinoma cell Line HepG-2 was measured by MTT method. Morphological observation of the HepG-2 cells was completed by fluorescence microscope. The apoptosis indueing effect and changing of mitoehondria membrane potential of the CSA on the HepG-2 cells were measured by flow cytometry. In addition, effect of intraeellular Ca2+ level of the CSA on the HepG-2 cells was studied by laser confocal microscope. Results The CSA has obvious cytotoxicity on the HepG-2 and seems to be dose-dependent, and its IC50 value is 162.4 μg·mL-1. The HepG-2 cells have characteristic morphologic changes of apoptosis by the function of CSA, and the apoptosis percentage is higher than the natural one. The progress of cells cycle from S phase to G2 phase has been blocked, and the mitochondria membrane potential is markedly decreased, and the intraecllular Ca2+ level is increased by the function of CSA. Conclusions The CSA has obviously killing and apoptosis inducing effect on human hepatoearcinoma cell Line HepG-2 by the mechanism of decreasing the mitoehondria membrane potential and increasing the intracellular Ca2+ level.

  6. Directory of Programs: High School Equivalency Program (HEP) and College Assistance Migrant Program (CAMP).

    Science.gov (United States)

    Salerno, Anne

    This directory lists currently funded High School Equivalency Programs (HEPs) and College Assistance Migrant Programs (CAMPs) in the United States. The HEP allows migrant workers or their dependents to prepare for the General Educational Development high school equivalency diploma in a residential college setting or as commuters to class. Career…

  7. [Effect of microRNA-205 on proliferation of laryngeal carcinoma cell line Hep-2].

    Science.gov (United States)

    Li, Xiaotian; Li, Wei; Jiang, Xuejun

    2015-05-01

    To study the effect of microRNA-205 (miRNA-205) on proliferation of laryngeal carcinoma cell line Hep-2. The expressions of miRNA-205 in 27 cases laryngeal carcinoma tissues and adjacent normal tissues were detected by Real-time quantitative PCR, the expression of PTEN protein was detected by Western blot. The expressions of PTEN were detected by Western blot after miRNA-205 inhibitor or miRNA-205 mimics was transfected into Hep-2 cells and Hep-2 cells proliferation was measured by CCK-8 kit. The expression level of miRNA-205 was significantly higher in laryngeal carcinoma tissues than in adjacent normal tissues (P Hep-2 cells was decreased significantly and the expression of PTEN protein in Hep-2 cells was increased significantly after miRNA-205 inhibitor was transfected into (P Hep-2 cells was increased significantly and the expression of PTEN protein in Hep-2 cells was decreased significantly after miRNA-205 mimics was transfected into (P Hep-2 cells by regulating the expression of PTEN.

  8. [Suppression of Aurora-A by RNA interference inhibits laryngeal cancer Hep-2 cell growth].

    Science.gov (United States)

    Zhang, Hao; Chen, Xue-hua; Cai, Chang-ping; Wang, Shi-li; Liu, Bing-ya; Zhou, Liang

    2012-01-01

    To investigate the effects of knockdown of Aurora-A by RNA interference on laryngeal cancer Hep-2 cell growth in vitro and in vivo. A plasmid containing siRNA against Aurora-A was constructed and transfected into human laryngeal cancer cell line Hep-2. Measurements included the CCK-8 assay for viability and proliferation, Transwell assay for invasion, colony formation assay for cell anchorage-independent growth. Western blot and immunohistochemistry assay for protein expression. Tumorigenicity was observed in vivo. In Hep-2 cells transfected by Aurora-A siRNA (designated as siRNA-3), protein expression of Aurora-A was suppressed by 52%. In CCK-8 assay, absorbance value of siRNA-3 cells (3.268 ± 0.106, (x(-) ± s)) was lower than that of Hep-2 cells (3.722 ± 0.152, F = 17.634, P Hep-2 cells (236.0 ± 26.0, F = 26.462, P Hep-2 cells (104.0 ± 14.0). The average tumor size in siRNA-3 group was (127.77 ± 174.83) mm(3), which was less than Hep-2 cell group (837.26 ± 101.80) mm(3), (F = 28.187, P Hep-2 cells in vitro and in vivo, which may be a promising therapeutic strategy for LSCC.

  9. XPD Functions as a Tumor Suppressor and Dysregulates Autophagy in Cultured HepG2 Cells.

    Science.gov (United States)

    Zheng, Jian-Feng; Li, Lin-Lin; Lu, Juan; Yan, Kun; Guo, Wu-Hua; Zhang, Ji-Xiang

    2015-05-29

    Recent clinical studies have linked polymorphisms in the xeroderma pigmentosum group D (XPD) gene, a key repair gene involved in nucleotide excision repair, to increased risk of hepatocellular carcinoma (HCC). However, the cellular effects of XPD expression in cultured HCC cells remain largely uncharacterized. Therefore, the aim of this study was to characterize the in vitro cellular effects of XPD expression on the HCC cell line HepG2. HepG2 cells were transfected as follows to create four experimental groups: pEGFP-N2/XPD plasmid (XPD) group, EGFP-N2 plasmid (N2) control group, lipofectamine™ 2000 (lipid) control group, and non-transfected (CON) control group. An MTT cell proliferation assay, Annexin V-APC apoptosis assay, colony formation assay, scratch wound migration assay, Transwell migration assay, and Western blotting of the autophagic proteins LC3 and p62 were conducted. XPD expression significantly inhibited HepG2 cell proliferation (pHepG2 cell apoptosis (pHepG2 colony formation (pHepG2 cells' migratory ability (pHepG2 cells' invasive capacity (pHepG2 cells in vitro. Further in vivo pre-clinical studies and clinical trials are needed to validate XPD's potential as a tumor-suppressive gene therapy.

  10. Participants to the 3rd HEP Information Resources Summit, 6-7 May 2009

    CERN Multimedia

    Fermilab, Photo Service

    2009-01-01

    The broad theme of the 3rd HEP Information Resources Summit was "Collaboration between Information Services." As HEP increasingly borders fields such as instrumentation and astrophysics, it was discussed what potential interrelationships and communication this group have to serve this broader research community seamlessly.

  11. Habitat Evaluation Procedures (HEP) Report : Ladd Marsh, 2001 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Oregon Department of Fish and Wildlife

    2001-10-01

    Since the mid-1980s, the Oregon Department of Fish and Wildlife (ODFW) has been participating in the Bonneville Power Administration's (BPA's) efforts to mitigate for the negative impacts to fish and wildlife resulting from the development and operation of the 7 Columbia Basin Federal Hydropower System. BPA's mitigation obligations were formally recognized and mandated by the Northwest Power Act of 1980 and are guided by the Northwest Power Planning Council's (NWPPC's) Columbia Basin Fish and Wildlife Program. BPA funds fish and wildlife projects throughout the Basin to meet the habitat and population restorative goals and objectives outlined in the NWPPC's Fish and Wildlife Program and to fulfill its mitigation responsibilities under the Power Act. Impacts to wildlife resulting from hydrofacility construction/inundation were estimated using Habitat Evaluation Procedures (HEP) in the mid and late 1980s and are documented in BPA' s Wildlife Loss Assessments (Rasmussen and Wright 1990,a,b,c,d) and in the U.S. Army Corps of Engineers Lower Snake River Wildlife Habitat Compensation Evaluation (ACOE 1991). The loss assessments provided estimates of lost habitat quality and quantity for the target species selected to represent the habitat cover types impacted by hydropower construction/inundation. The NWPPC incorporated these losses into their Fish and Wildlife Program, recognizing them as the unannualized losses attributable to the construction/inundation of the federal hydropower system (NWPPC 1995 and 2000, Table 1 1-4). The HEP methodology is used by wildlife managers within the Columbia Basin to determine habitat values, expressed as Habitat Units, gained through BPA-funded mitigation project work. ODFW and the other Oregon wildlife managers (i.e., U.S. Fish and Wildlife Service, Confederated Tribes of the Warms Springs Reservation of Oregon, Burns Paiute Tribe, and Confederated Tribes of the Umatilla Indian Reservation [CTUIR

  12. [Promoting effect of Chlamydia pneumoniae infection on human laryngeal carcinoma HEp-2 cell adhesion and migration].

    Science.gov (United States)

    Zhang, Li-Jun; Hong, Li; Chen, Ning; Shen, Bing-Ling; Deng, Yan-Qiu; Quan, Wei; Wang, Bei-Bei; Zhang, Li-Jun

    2011-01-01

    To explore the effect of Chlamydia pneumoniae (C.pn) infection on human laryngeal carcinoma cell line HEp-2 cell adhesion and migration, to further clarify the role and mechanism of C.pn infection in tumor metastasis. HEp-2 cells were infected with C.pn after the culture and propagation of C.pn. The cytopathic effect was observed by microscopy. Morphological characteristics of C.pn inclusions in HEp-2 cells were examined by fluorescence microscopy and acridine orange staining. The ultrastructural changes of C.pn inclusions in the HEp-2 cells were examined by transmission electron microscopy (TEM). Cell adhesion assay was performed to investigate the effect of C.pn infection on the adhesion of HEp-2 cells to collagen I. Wound-healing assay and transwell assay were performed to explore the effect of C.pn infection on HEp-2 cell migration. At 72 h post-infection, C.pn infected-HEp-2 cells were swollen and partially desquamated. Numerous vacuoles (inclusions) were observed and C.pn inclusions occupied almost the whole cytoplasm of the HEp-2 cells. Grape-like C.pn inclusions were observed in the HEp-2 cells stained with acridine orange under a fluorescence microscope at 72 h after infection. Under TEM, there were more mature pear-shaped elementary bodies, but less larger and round reticulate bodies in the HEp-2 cells infected with C.pn for 72 h. In the cell adhesion assay, the A value in C.pn infection group was 0.669 ± 0.011, significantly higher than that in the control group (0.558 ± 0.005) at 2 h after infection (P HEp-2 cells in the wound-healing assay was significantly longer than that of control cells at 24 h after infection (P HEp-2 cells infected with C.pn for 12 h migrated more than the control cells in the transwell assay (23.40 ± 2.41 vs 10.40 ± 1.67) (P HEp-2 cell adhesion to collagen I and migration of HEp-2 cells, indicating that C.pn infection may play an important role in promoting the metastasis of laryngeal cancer.

  13. ATLAS@Home: Harnessing Volunteer Computing for HEP

    Science.gov (United States)

    Adam-Bourdarios, C.; Cameron, D.; Filipčič, A.; Lancon, E.; Wu, W.; ATLAS Collaboration

    2015-12-01

    A recent common theme among HEP computing is exploitation of opportunistic resources in order to provide the maximum statistics possible for Monte Carlo simulation. Volunteer computing has been used over the last few years in many other scientific fields and by CERN itself to run simulations of the LHC beams. The ATLAS@Home project was started to allow volunteers to run simulations of collisions in the ATLAS detector. So far many thousands of members of the public have signed up to contribute their spare CPU cycles for ATLAS, and there is potential for volunteer computing to provide a significant fraction of ATLAS computing resources. Here we describe the design of the project, the lessons learned so far and the future plans.

  14. ATLAS@Home: Harnessing Volunteer Computing for HEP

    CERN Document Server

    Bourdarios, Claire; Filipcic, Andrej; Lancon, Eric; Wu, Wenjing

    2015-01-01

    A recent common theme among HEP computing is exploitation of opportunistic resources in order to provide the maximum statistics possible for Monte-Carlo simulation. Volunteer computing has been used over the last few years in many other scientific fields and by CERN itself to run simulations of the LHC beams. The ATLAS@Home project was started to allow volunteers to run simulations of collisions in the ATLAS detector. So far many thousands of members of the public have signed up to contribute their spare CPU cycles for ATLAS, and there is potential for volunteer computing to provide a significant fraction of ATLAS computing resources. Here we describe the design of the project, the lessons learned so far and the future plans.

  15. Offering Global Collaboration Services beyond CERN and HEP

    CERN Document Server

    Fernandes, J; Baron, T

    2015-01-01

    The CERN IT department has built over the years a performant and integrated ecosystem of collaboration tools, from videoconference and webcast services to event management software. These services have been designed and evolved in very close collaboration with the various communities surrounding the laboratory and have been massively adopted by CERN users. To cope with this very heavy usage, global infrastructures have been deployed which take full advantage of CERN's international and global nature. If these services and tools are instrumental in enabling the worldwide collaboration which generates major HEP breakthroughs, they would certainly also benefit other sectors of science in which globalization has already taken place. Some of these services are driven by commercial software (Vidyo or Wowza for example), some others have been developed internally and have already been made available to the world as Open Source Software in line with CERN's spirit and mission. Indico for example is now installed in 10...

  16. Haemophilus influenzae triggers autophagy in HEp-2 cells.

    Science.gov (United States)

    Espinoza-Mellado, María del Rosario; Reyes-Picaso, Carolina; Garcés-Pérez, Miriam S; Jardón-Serrano, Cynthia V; López-Villegas, Edgar O; Giono-Cerezo, Silvia

    2016-03-01

    The MAP-LC3 system regulates the intracellular formation of autophagy-associated vacuoles. These vacuoles contain the LC3 protein; thus it has been utilized as a marker to identify autophagosomes. The aim of our study was to investigate whether Haemophilus influenzae strains and their supernatants could activate autophagy in human larynx carcinoma cell line (HEp-2). We demonstrate that higher expression of the LC3B-II protein was induced, particularly by nontypeable Haemophilus influenzae (NTHi) 49766 and by supernatants, containing <50 kDa proteins, of both strains. Ultrastructural studies demonstrate vacuoles with a double membrane and/or membrane material inside, showing similar features to those of autophagic vacuoles. Together, our findings demonstrate that H. influenzae strains and their supernatants trigger an autophagic process.

  17. GSDC: A Unique Data Center in Korea for HEP research

    Science.gov (United States)

    Ahn, Sang-Un

    2017-04-01

    Global Science experimental Data hub Center (GSDC) at Korea Institute of Science and Technology Information (KISTI) is a unique data center in South Korea established for promoting the fundamental research fields by supporting them with the expertise on Information and Communication Technology (ICT) and the infrastructure for High Performance Computing (HPC), High Throughput Computing (HTC) and Networking. GSDC has supported various research fields in South Korea dealing with the large scale of data, e.g. RENO experiment for neutrino research, LIGO experiment for gravitational wave detection, Genome sequencing project for bio-medical, and HEP experiments such as CDF at FNAL, Belle at KEK, and STAR at BNL. In particular, GSDC has run a Tier-1 center for ALICE experiment using the LHC at CERN since 2013. In this talk, we present the overview on computing infrastructure that GSDC runs for the research fields and we discuss on the data center infrastructure management system deployed at GSDC.

  18. Microelectronics and nanoelectronics trends, and applications to HEP instrumentation

    CERN Document Server

    CERN. Geneva

    2004-01-01

    Lecture 1 : Microelectronics and HEP instrumentation CMOS technology has been the leading technology in microelectronics for more that 30 years thanks to its outstanding capability to miniaturization and low power consumption. A brief history of the microelectronics semiconductor industry is presented with applications for LEP and LHC experiments. Lecture 2: Future trends in microelectronics and nanoelectronics Trends in miniaturization point to the fabrication of ULSI nanoscale CMOS circuits by the end of the decade. Device issues and quantum effects in nanoscale MOS transistor will be discussed. Beyond CMOS technology, several technology avenues based on nanotechnology are under investigation. We will present some promising nanoelectronic devices and circuits based on Single Electron Tunneling (SET) transistor, nanowire, quantum dot and carbon nanotubes. Lecture 3: Monolithic pixel detectors Microvertex detectors for particle physics experiments currently uses hybrid silicon pixel detector. Novel emerging m...

  19. HEP Outreach, Inreach, and Web 2.0

    Science.gov (United States)

    Goldfarb, Steven

    2011-12-01

    I report on current usage of multimedia and social networking "Web 2.0" tools for Education and Outreach in high-energy physics, and discuss their potential for internal communication within large worldwide collaborations, such as those of the LHC. Following a brief description of the history of Web 2.0 development, I present a survey of the most popular sites and describe their usage in HEP to disseminate information to students and the general public. I then discuss the potential of certain specific tools, such as document and multimedia sharing sites, for boosting the speed and effectiveness of information exchange within the collaborations. I conclude with a brief discussion of the successes and failures of these tools, and make suggestions for improved usage in the future.

  20. The osteoprotective effect of Herba epimedii (HEP extract in vivo and in vitro

    Directory of Open Access Journals (Sweden)

    Fang Xie

    2005-01-01

    Full Text Available Herba epimedii (HEP is one of the most frequently used herbs prescribed for treatment of osteoporosis in China. In the present study, the in vivo effects of HEP extract on bone metabolism were evaluated using 4-month-old ovariectomized (OVX or sham-operated (Sham female Sprague-Dawley rats orally administered with HEP extract (110 mg kg−1d−1, 17ß-estrogen (2 mg kg−1d−1 or its vehicle for 3 months. HEP extract significantly decreased urinary calcium excretion, suppressed serum alkaline phosphatase (ALP activity and urinary deoxypyridinoline levels in OVX rats (P < 0.05 versus vehicle-treated OVX rats. Histomorphometric analysis indicated that HEP extract could prevent OVX-induced bone loss by increasing tibial trabecular bone area and decreasing trabecular separation in OVX rats (P < 0.05 versus vehicle-treated OVX group. The in vitro effects of HEP extract were also studied using rat osteoblast-like UMR 106 cells. HEP extract significantly stimulated cell proliferation in a dose-dependent manner (P < 0.01 versus vehicle-treated and increased ALP activity at 200 μgml−1 (P < 0.01 versus vehicle-treated in UMR 106 cells. It modulated osteoclastogenesis by increasing osteoprotegrin (OPG mRNA and decreasing receptor activator of NF-κB ligand (RANKL mRNA expression, resulting in a dose-dependent increase in OPG/RANKL mRNA ratio (P < 0.01 versus vehicle-treated. Taken together, HEP treatment can effectively suppress the OVX-induced increase in bone turnover possibly by both an increase in osteoblastic activities and a decrease in osteoclastogenesis. The present study provides the evidence that HEP can be considered as a complementary and alternative medicine for treatment of post-menopausal osteoporosis.

  1. Detection of Enteroaggregative Escherichia coli with Formalin-Preserved HEp-2 Cells

    OpenAIRE

    Miqdady, Mohamad S; Jiang, Zhi-Dong; Nataro, James P.; DuPont, Herbert L.

    2002-01-01

    Formalin-stored HEp-2 cells were used to assay Escherichia coli for adherence. Cells refrigerated in formalin for up to 28 days and used in a wet assay format demonstrated an assay sensitivity ranging from 94 to 98% to detect enteroaggregative E. coli (EAEC). HEp-2 cells first fixed and stored with formalin and then stored dry in ambient conditions for 6 weeks demonstrated an assay sensitivity of 92% to detect EAEC. Using formalin-fixed HEp-2 cells will improve the efficiency of EAEC identifi...

  2. Estudio del estado bucodental del paciente trasplantado hepático

    OpenAIRE

    Díaz Ortiz, María Luisa; Micó Llorens, José María; Gargallo Albiol, Jordi; Baliellas Comellas, Carmen; Berini Aytés, Leonardo

    2005-01-01

    Desde que se realizó en España el primer trasplante hepático en el año 1984 los avances en la técnica quirúrgica y en los fármacos inmunosupresores empleados han producido un aumento en el número de pacientes trasplantados. El objetivo del presente estudio fue valorar el estado bucodental de los pacientes trasplantados hepáticos. Se realizó un estudio descriptivo transversal de una muestra de pacientes que habían sido sometidos a un trasplante hepático en el Hospital Prín...

  3. Inmunoglobina g en paciente con absceso hepátifo amebiano

    OpenAIRE

    Pinilla Roa, Análida Elizabeth; López Páez, Myriam Consuelo; Viasus Pérez, Diego Fernando

    2014-01-01

    La infección por Entamoeba histolyticapuedecausar disentería y absceso hepáticoamebiano, enfermedades de alta morbi-mortalidad.Los estudios seroepidemiológicoshan demostradoque la mayoría (81-100%) de los pacientescon absceso hepático amebiano y hastala mitad en la colitis amebiana desarrollaninmunoglobulinaG (IgG) específica para E.histolytica, que persiste por varios años. Portal motivo, hay controversia acerca de la utilidadde la prueba de ELISA IgG para el diagnósticode absceso hepático a...

  4. Necrose isquêmica hepática e diabete melito: relato de caso

    OpenAIRE

    2007-01-01

    JUSTIFICATIVA E OBJETIVOS: O infarto hepático é definido como necrose isquêmica do parênquima hepático envolvendo pelo menos dois ácinos. Trata-se de evento considerado raro devido ao duplo suprimento sangüíneo, arterial e venoso. O objetivo deste estudo foi relatar um caso de paciente não sabidamente diabética que desenvolveu extensas áreas isquêmicas de infarto hepático, após quadro de descompensação aguda da diabete. RELATO DO CASO: Paciente do sexo feminino, 67 anos, hipertensa, procurou ...

  5. Encefalopatía hepática en perros y gatos

    OpenAIRE

    Pellegrino, Fernando Carlos

    2009-01-01

    La encefalopatía hepática (EH) en perros y gatos es un disturbio metabólico complejo del sistema nervioso central que puede deberse a insufi ciencia hepática, defi ciencias enzimáticas en el ciclo de la urea o a desvíos portosistémicos. Como resultado, las funciones hepáticas de desintoxicación se alteran y/o son eludidas, y los constituyentes inalterados de la sangre portal penetran directamente a la circulación sistémica. La patogénesis de la encefalopatía asociada a la insu...

  6. HEp-2 Cell Classification Using Shape Index Histograms With Donut-Shaped Spatial Pooling

    DEFF Research Database (Denmark)

    Larsen, Anders Boesen Lindbo; Vestergaard, Jacob Schack; Larsen, Rasmus

    2014-01-01

    We present a new method for automatic classification of indirect immunoflourescence images of HEp-2 cells into different staining pattern classes. Our method is based on a new texture measure called shape index histograms that captures second-order image structure at multiple scales. Moreover, we...... datasets. Our results show that shape index histograms are superior to other popular texture descriptors for HEp-2 cell classification. Moreover, when comparing to other automated systems for HEp-2 cell classification we show that shape index histograms are very competitive; especially considering...

  7. Biomarcadores para fibrosis hepática, avances, ventajas y desventajas

    OpenAIRE

    Cequera, A.; García de León Méndez, M.C.

    2014-01-01

    La cirrosis hepática en México es una de las principales causas de muerte en sujetos entre los 25 y los 50 años de edad. Una de las principales razones del fracaso terapéutico es el desconocimiento de los mecanismos moleculares que producen el trastorno hepático y lo hacen irreversible. Entre sus características anatómicas prevalece un depósito excesivo de tejido fibroso que adopta diferentes formas, dependiendo de la etiología y etapa de la enfermedad. La biopsia hepática, considerada tra...

  8. Evaluating the scalability of HEP software and multi-core hardware

    CERN Document Server

    Jarp, S; Leduc, J; Nowak, A

    2011-01-01

    As researchers have reached the practical limits of processor performance improvements by frequency scaling, it is clear that the future of computing lies in the effective utilization of parallel and multi-core architectures. Since this significant change in computing is well underway, it is vital for HEP programmers to understand the scalability of their software on modern hardware and the opportunities for potential improvements. This work aims to quantify the benefit of new mainstream architectures to the HEP community through practical benchmarking on recent hardware solutions, including the usage of parallelized HEP applications.

  9. HepG2 cells acquire stem cell-like characteristics after immune cell stimulation.

    Science.gov (United States)

    Wang, Hang; Yang, Miqing; Lin, Ling; Ren, Hongzhen; Lin, Chaotong; Lin, Suling; Shen, Guoying; Ji, Binfeng; Meng, Chun

    2016-02-01

    The presence of cancer stem cells (CSCs) is currently regarded as one of the main culprits of tumor formation and therapy failure. It is known that chronic inflammation is associated with CSCs, but it is not clear yet how inflammation affects the development of CSCs. In the present study we aimed to examine the relationship between cancer cell stimulation mediated by immune cells and the acquisition of a CSC-like phenotype. Cancer cells derived from single hepatocarcinoma HepG2 cells were treated with mouse splenic B cells (MSBCs) and mouse peritoneal macrophage cells (MPMCs), respectively. The stem cell-like characteristics of the resulting HepG2 cells (MSBC-HepG2 and MPMC-HepG2) were evaluated using different assays, including biomarker assays, in vitro tumoroid and colony forming assays, in vivo tumor forming assays and signal transduction pathway activation assays. Various stemness characteristics of HepG2 cells, including self-renewal, proliferation, chemoresistance and tumorigenicity were evaluated. The expression levels of stemness-related genes and its encoded proteins in the MSBC-HepG2 and MPMC-HepG2 cells were assessed using RT-PCR and FACS analyses. We found that MSBC-HepG2 and MPMC-HepG2 cells possess hepatic CSC properties, including persistent self-renewal, extensive proliferation, drug resistance, high tumorigenic capacity and over-expression of CSC-related genes and proteins (i.e., EpCAM, ALDH, CD133 and CD44), compared to the parental cells. We also found that 1x10(3) MSBC-HepG2 and MPMC-HepG2 cells were able to form tumors in NOD/SCID mice and that the Notch and SHH signaling pathways were highly activated in MSBC-HepG2 cells. We conclude that the immune system may have a double-edge effect on cancer development. On one hand, immune cells such as B lymphocytes and macrophages may recognize, attack and eliminate cancer cells, whereas on the other hand, they may promote a subset of cancer cells to acquire stem cell-like characteristics.

  10. Encefalopatía hepática en perros y gatos

    OpenAIRE

    Pellegrino, Fernando Carlos

    2009-01-01

    La encefalopatía hepática (EH) en perros y gatos es un disturbio metabólico complejo del sistema nervioso central que puede deberse a insufi ciencia hepática, defi ciencias enzimáticas en el ciclo de la urea o a desvíos portosistémicos. Como resultado, las funciones hepáticas de desintoxicación se alteran y/o son eludidas, y los constituyentes inalterados de la sangre portal penetran directamente a la circulación sistémica. La patogénesis de la encefalopatía asociada a la insu...

  11. Modelos animales de fallo hepético fulminante Animal models of fulminant hepatic failure

    OpenAIRE

    Tuñón, M. J.; Álvarez, M.; J. M. Culebras; J González-Gallego

    2007-01-01

    El fallo hepático fulminante (FHF) es un síndrome clínico muy grave, asociado con alta mortalidad, a pesar de los grandes avances que se han producido en los últimos años en la terapia tanto del manejo de los cuidados intensivos mediante diversos soportes hepáticos bioartificiales como del trasplante hepático. Tanto el conocimiento como el tratamiento del FHF han estado limitados por la falta de modelos animales satisfactorios. Así, han sido muchos los intentos de desarrollar un modelo adecua...

  12. A Performance-Prediction Model for PIC Applications on Clusters of Symmetric MultiProcessors: Validation with Hierarchical HPF+OpenMP Implementation

    Directory of Open Access Journals (Sweden)

    Sergio Briguglio

    2003-01-01

    Full Text Available A performance-prediction model is presented, which describes different hierarchical workload decomposition strategies for particle in cell (PIC codes on Clusters of Symmetric MultiProcessors. The devised workload decomposition is hierarchically structured: a higher-level decomposition among the computational nodes, and a lower-level one among the processors of each computational node. Several decomposition strategies are evaluated by means of the prediction model, with respect to the memory occupancy, the parallelization efficiency and the required programming effort. Such strategies have been implemented by integrating the high-level languages High Performance Fortran (at the inter-node stage and OpenMP (at the intra-node one. The details of these implementations are presented, and the experimental values of parallelization efficiency are compared with the predicted results.

  13. Hybrid Scheduling of Embedded Multi-Processor System%嵌入式多处理器系统混合调度机制的研究

    Institute of Scientific and Technical Information of China (English)

    李哲; 慕德俊; 郭蓝天; 黄兴利; 李刘涛

    2015-01-01

    Generic multi-processor systems in high performance computing applications such as Intel, NVIDIA Tesla systems have been developing rapidly, but their cost and power consumption were soaring;low-end hardware, especially in embedded systems that make up the cluster as an alternative to traditional platforms got attention and rapid development.We discuss a low cost infrastructure and implementation of embedded multiprocessor systems, take advantage of platform features to implement a special MIMD structure,which is capable of supporting a hybrid scheduling system adaptable to different working environments, tasks, and conditions.Test results and their analysis show preliminarily that the system can support a variety of hybrid scheduling policy for scheduling and can signifi-cantly improve the processing power of the system.%通用高性能计算机需求不断增加,传统多处理系统得到了快速发展,但其成本和功耗也大幅攀升,以嵌入式系统构成群集替代传统平台成为未来焦点。讨论了一种成本低廉的嵌入式多处理器系统的基本结构与实现,利用平台特性实现了一种特殊MIMD结构,在集中式工作池的基础上能够支持混合调度机制以适应不同工作环境、任务条件需要。试验结果分析表明,该系统能够支持多种调度机制的混合调度策略,更能够较大幅度提升系统的运算能力。

  14. 78 FR 64927 - Agency Information Collection Activities; Comment Request; High School Equivalency Program (HEP...

    Science.gov (United States)

    2013-10-30

    ... Office of Migrant Education (OME) is collecting information for the High School Equivalency Program (HEP..., Sec. 418A; 20 U.S.C. 1070d-2 (special programs for students whose families are engaged in migrant...

  15. Surface Grafted Glycopolymer Brushes to Enhance Selective Adhesion of HepG2 Cells

    DEFF Research Database (Denmark)

    Chernyy, Sergey; Jensen, Bettina Elisabeth Brøgger; Shimizu, Kyoko

    2013-01-01

    process on a previously formed poly(LAMA) brushes. The morphology of human hepatocellular carcinoma cancer cells (HepG2) on the comb-like poly(LAMA) brush layer has been studied. The fluorescent images of the HepG2 cells on the glycopolymer brush surface display distinct protrusions that extend outside...... of the cell periphery. On the other hand the cells on bare glass substrate display spheroid morphology. Further analysis using ToF-SIMS imaging shows that the HepG2 cells on glycopolymer surfaces is enriched with protein fragment along the cell periphery which is absent in the case of cells on bare glass...... substrate. It is suggested that the interaction of the galactose units of the polymer brush with the asialoglycoprotein receptor (ASGPR) of HepG2 cells has resulted in the protein enrichment along the cell periphery....

  16. Effect of Rb on Proliferation of HepG2 Cell Line%Rb对HepG2肝癌细胞系增殖的影响

    Institute of Scientific and Technical Information of China (English)

    刘清源; 施学忠; 李来生; 孙斌

    2006-01-01

    目的 研究Rb基因及其产物对HepG2肝癌细胞系增殖的影响.方法 转染pRb质粒进入HepG2肝癌细胞系,用MTT法检测转染前后细胞增殖的变化,并将转染pRb质粒的HepG2肝癌细胞接种在裸鼠皮下建立肝癌裸鼠种植瘤模型,观察转染pRb质粒前后裸鼠体内种植瘤生长的变化.结果 转染pRb质粒的HepG2肝癌细胞与未转染pRb质粒者相比细胞增殖受到抑制.成功建立HepG2肝癌细胞裸鼠体内种植瘤模型,转染pRb质粒的HepG2肝癌细胞的裸鼠体内种植瘤生长受抑制.转染组种植瘤体积第4周(429.7±114.987)mm3,第5周(657.90±187.27)mm3,第6周(892.56±258.73)mm3.结论 Rb在体内和体外均能抑制肝癌细胞的增殖.

  17. Establishment of hepatocellular carcinoma multidrug resistant monoclone cell line HepG2/mdr1

    Institute of Scientific and Technical Information of China (English)

    CHEN Yong-bing; XIE Jian-guo; YANG Jia-yin; YAN Lü-nan; YAN Mao-lin; GONG Jian-ping; XIA Ren-pin; LIU Li-xin; LI Ning; LU Shi-chun; ZHANG Jing-guang; ZENG Dao-bing

    2007-01-01

    Background The multidrug resistance (MDR) associated with the expression of the mdr1 gene and its product P-glycoprotein is a major factor in the prognosis of hepatocellular carcinoma cell (HCC) patients treated with chemotherapy. Our study was to establish a stable HCC MDR cell line where a de novo acquisition of multidrug resistance specifically related to overexpression of a transgenic mdr1.Methods The 4.5-kb mdr1 cDNA obtained from the plasmid pHaMDR1-1 was cloned into the PCI-neo mammalian expression vector, later was transferred by liposome to human hepatocarcinoma cell line HepG2. Then the transfected HepG2 cells resisting G418 were clustered and cultured and the specific fragment of mdr1 cDNA, mRNA and the P-glycoprotein (Pgp) in these HepG2 cells were detected by PCR, RT-PCR and flow cytometry, respectively. The accumulation of the daunorubicin was determinated by flow cytometry simultaneously. The nude mice model of grafting tumour was established by injecting subcutaneously HepG2/mdr1 cells in the right axilla. When the tumour diameter reached 5 mm, adriamycin was injected into peritoneal cavity. The size and growth inhibition of tumour were evaluated.Results The mdr1 expression vector was constructed successfully and the MDR HCC line HepG2/mdr1 developed.The PCR analysis showed that the specific fragment of mdr1 cDNA in HepG2/mdr1 cells, but not in the control group HepG2 cells. Furthermore, the content of the specific fragment of mdr1 mRNA and Pgp expression in HepG2/mdr1 cells were (59.7±7.9)% and (12.28±2.09)%, respectively, compared with (16.9±3.2)% and (3.07±1.06)% in HepG2 cells.In the nude mice HCC model, the tumour genes of both groups were identified. After ADM therapy, the mean size of HepG2 cell tumours was significantly smaller than HepG2/mdr1 cell tumours.Conclusion The approach using the transfer of mdr1 cDNA may be applicable to the development of MDR hepatocarcinoma cell line, whose MDR mechanism is known. This would provide the

  18. HappyFace as a generic monitoring tool for HEP experiments

    Science.gov (United States)

    Kawamura, Gen; Magradze, Erekle; Musheghyan, Haykuhi; Quadt, Arnulf; Rzehorz, Gerhard

    2015-12-01

    The importance of monitoring on HEP grid computing systems is growing due to a significant increase in their complexity. Computer scientists and administrators have been studying and building effective ways to gather information on and clarify a status of each local grid infrastructure. The HappyFace project aims at making the above-mentioned workflow possible. It aggregates, processes and stores the information and the status of different HEP monitoring resources into the common database of HappyFace. The system displays the information and the status through a single interface. However, this model of HappyFace relied on the monitoring resources which are always under development in the HEP experiments. Consequently, HappyFace needed to have direct access methods to the grid application and grid service layers in the different HEP grid systems. To cope with this issue, we use a reliable HEP software repository, the CernVM File System. We propose a new implementation and an architecture of HappyFace, the so-called grid-enabled HappyFace. It allows its basic framework to connect directly to the grid user applications and the grid collective services, without involving the monitoring resources in the HEP grid systems. This approach gives HappyFace several advantages: Portability, to provide an independent and generic monitoring system among the HEP grid systems. Eunctionality, to allow users to perform various diagnostic tools in the individual HEP grid systems and grid sites. Elexibility, to make HappyFace beneficial and open for the various distributed grid computing environments. Different grid-enabled modules, to connect to the Ganga job monitoring system and to check the performance of grid transfers among the grid sites, have been implemented. The new HappyFace system has been successfully integrated and now it displays the information and the status of both the monitoring resources and the direct access to the grid user applications and the grid collective

  19. High Permissivity of Human HepG2 Hepatoma Cells for Influenza Viruses

    OpenAIRE

    Ollier, Laurence; Caramella, Anne; Giordanengo, Valérie; Lefebvre, Jean-Claude

    2004-01-01

    Human HepG2 hepatoma cells are highly permissive for influenza virus type A and type B, even without the addition of trypsin, and they exhibit a marked cytopathic effect. This property greatly facilitates the primary isolation of influenza viruses. Virus replication was significantly reduced by the plasmin(ogen)-specific inhibitor tranexamic acid, and this suggests a potential role played by the plasminogen/tissue plasminogen activator complex at the surface of HepG2 cells. This might represe...

  20. Habitat Evaluation Procedures (HEP) Report : Grand Coulee Dam Mitigation, 1996-1999 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Kieffer, B.; Singer, Kelly; Abrahamson, Twa-le

    1999-07-01

    The purpose of this Habitat Evaluation Procedures (HEP) study was to determine baseline habitat units and to estimate future habitat units for Bonneville Power Administration (BPA) mitigation projects on the Spokane Indian Reservation. The mitigation between BPA and the Spokane Tribe of Indians (STOI) is for wildlife habitat losses on account of the construction of Grand Coulee Dam. Analysis of the HEP survey data will assist in mitigation crediting and appropriate management of the mitigation lands.

  1. Metabolismo de hidrato de cloral en ratas con insuficiencia hepática inducida por insuficiencia hepática inducida por tetracloruro de carbono

    OpenAIRE

    Moreno E., Luis; División de Química, Centro Nacional de Control de Calidad, Instituto Nacional de Salud. Lima, Perú.; Herrera C., Andrés; División de Microbiología, Centro Nacional de Control de Calidad, Instituto Nacional de Salud. Lima, Perú.; Oyola de Bardales, Luz; Facultad de Farmacia y Bioquímica, Universidad Nacional Mayor de San Marcos. Lima, Perú.; Arroyo A., Jorge; Facultad de Medicina, Universidad Nacional Mayor de San Marcos. Lima, Perú.; Marrufo S., Liliana; Laboratorio de Cromatografía, Dirección General de Salud Ambiental. Lima, Perú.

    2003-01-01

    Objetivo: Determinar el metabolismo del hidrato de cloral en ratas bajo condiciones normales y en ratas con insuficiencia hepática inducida con tetracloruro de carbono. Material y métodos: Se usaron ratas macho de la cepa Holtzman. El proceso de inducción de la insuficiencia hepática se realizó durante 3 días consecutivos; este efecto fue confirmado a través de cortes histológicos del hígado, administrándose luego hidrato de cloral por vía oral en ambos grupos. Posteriormente, se realizó el d...

  2. Effects of Lu-Do-Huang Extract (LDHE) on Apoptosis Induction in Human Hep3B Cells.

    Science.gov (United States)

    Huang, Hui-Yu; Chen, Li-Han; Liu, Chen-Wei; Chien, Ting-Yi; Yu, Yu-Ping; Kao, Yu-Yu; Yang, Jo-Hsuan; Tsai, Ying-Chieh

    2015-06-30

    Lu-Do-Huang (Pracparatum mungo) is a fermented mung bean [corrected] (Vigna radiata) and has long been used as a traditional and functional food in Traditional Chinese Medicine, especially for treating a variety of liver disorders. The present study aimed to evaluate the apoptotic effects of Lu-Do-Huang ethanol extract (LDHE) on Hep3B cells, a human hepatoma cell line. A variety of cellular assays, flow cytometry and immunoblotting were used. Our results showed that LDHE significantly inhibited Hep3B cells growth. Additionally, the cell cycle assay showed that LDHE prevented Hep3B cell entry into S phase and led to an arrest of Hep3B cells in the G₀/G₁ phase. LDHE induced Hep3B cells to undergo apoptosis as determined through Hep3B cell morphology changes, increase of apoptotic bodies, apoptotic cells, DNA fragmentations and caspase activity. We further examined the protein expression of TRADD, FADD, and Bax to verify the possible apoptotic pathways. The results indicated that LDHE-induced apoptosis in Hep3B cells might be mediated [corrected] by an extrinsic signaling pathway leading to an induction of apoptosis in Hep3B cells. In conclusion, LDHE induced apoptosis and cell cycle arrest in Hep3B cells. Our data provide the evidences regarding the anti-hepatoma potential of LDHE in Hep3B cells.

  3. Inactivation of PTEN is responsible for the survival of Hep G2 cells in response to etoposide-induced damage.

    Science.gov (United States)

    Mukherjee, Ananda; Samanta, Saheli; Karmakar, Parimal

    2011-10-01

    The chemo-resistance character of human hepatocellular carcinoma cells is well known but the anomalies associated with such resistance character are not completely understood. In this study, etoposide-induced signaling events in human hepatocellular carcinoma cell line, Hep G2 has been compared with Chang Liver cells, a normal human liver cell line. Hep G2 cells are resistant to etoposide when compared with Chang Liver cells. Etoposide-induced γH2AX foci in Hep G2 cells are persisted for a longer time without affecting cell cycle, indicating that Hep G2 cells are able to maintain its growth with damaged DNA. Further, Akt signaling pathway is deregulated in Hep G2 cells. The upstream negative regulator of Akt, PTEN remains inactive, as it is hyperphosphorylated in Hep G2 cells. Inhibition of PI-3K pathway by wortmannin partially reverses the etoposide-resistance character of Hep G2 cells. Either Hep G2 or Chang Liver cells when transfected with plasmid carrying active Akt (myr-Akt) become resistance towards etoposide compared to the cells transfected with empty vectors or kinase defective Akt. Transient transfection of wild type PTEN in Hep G2 cells does not change its response towards etoposide whereas Chang Liver cells become sensitive after transfection with same plasmid. These results suggest that inactivation of PTEN, which renders activation of Akt, may contribute largely for the etoposide-resistance character of Hep G2 cells. 2011 Elsevier B.V. All rights reserved.

  4. Combination with CK19 Might Increase the Prognostic Power of Hep Par 1 in Hepatocellular Carcinoma after Curative Resection.

    Science.gov (United States)

    Jin, Ye; Liang, Zhi-Yong; Zhou, Wei-Xun; Zhou, Li

    2017-07-31

    Hepatocyte Paraffin 1 (Hep Par 1) and cytokeratin 19 (CK19) were shown to be associated with post-surgical prognosis of hepatocellular carcinoma (HCC). However, further validation might be needed. Besides, their combined evaluation has not been reported. The present study was designed to address the issues. Expressions of Hep Par 1 and CK19 were detected using tissue microarray-based immunohistochemical staining in 79 patients with HCC underwent curative hepatectomy. Their associations with cliniopathologic variables, overall and recurrence-free survival were analyzed. Hep Par 1 was highly expressed in 61 patients (77.2%), whereas CK19 was positive in 8 patients (10.1%). Moreover, expressions of these two proteins were all associated with tumor-node-metastasis (TNM) stage and vascular invasion. It was found that high Hep Par 1 expression was univariately associated with good overall and recurrence-free survival, while CK19 was marginally prognostic. Also in univariate analyses, combination of the two markers more effectively predicted for long-term prognosis in HCC than Hep Par 1 did. However, neither Hep Par 1 nor Hep Par 1/CK19 was multivariately significant. Finally, Hep Par 1/CK19 combined with TNM stage might obtain more satisfactory outcome prediction, especially for overall survival. Combination of CK19 with Hep Par 1 might have higher prognostic power, which might be further improved by adding TNM stage, than Hep Par 1 alone, in resected HCC. Of course, subsequent confirmation is necessary.

  5. Xanthorrhizol induced DNA fragmentation in HepG2 cells involving Bcl-2 family proteins

    Energy Technology Data Exchange (ETDEWEB)

    Tee, Thiam-Tsui, E-mail: thiamtsu@yahoo.com [School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor (Malaysia); Cheah, Yew-Hoong [School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor (Malaysia); Bioassay Unit, Herbal Medicine Research Center, Institute for Medical Research, Jalan Pahang, Kuala Lumpur (Malaysia); Meenakshii, Nallappan [Biology Department, Faculty of Science, Universiti Putra Malaysia, 43400 Serdang, Selangor (Malaysia); Mohd Sharom, Mohd Yusof; Azimahtol Hawariah, Lope Pihie [School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor (Malaysia)

    2012-04-20

    Highlights: Black-Right-Pointing-Pointer We isolated xanthorrhizol, a sesquiterpenoid compound from Curcuma xanthorrhiza. Black-Right-Pointing-Pointer Xanthorrhizol induced apoptosis in HepG2 cells as observed using SEM. Black-Right-Pointing-Pointer Apoptosis in xanthorrhizol-treated HepG2 cells involved Bcl-2 family proteins. Black-Right-Pointing-Pointer DNA fragmentation was observed in xanthorrhizol-treated HepG2 cells. Black-Right-Pointing-Pointer DNA fragmentation maybe due to cleavage of PARP and DFF45/ICAD proteins. -- Abstract: Xanthorrhizol is a plant-derived pharmacologically active sesquiterpenoid compound isolated from Curcuma xanthorrhiza. Previously, we have reported that xanthorrhizol inhibited the proliferation of HepG2 human hepatoma cells by inducing apoptotic cell death via caspase activation. Here, we attempt to further elucidate the mode of action of xanthorrhizol. Apoptosis in xanthorrhizol-treated HepG2 cells as observed by scanning electron microscopy was accompanied by truncation of BID; reduction of both anti-apoptotic Bcl-2 and Bcl-X{sub L} expression; cleavage of PARP and DFF45/ICAD proteins and DNA fragmentation. Taken together, these results suggest xanthorrhizol as a potent antiproliferative agent on HepG2 cells by inducing apoptosis via Bcl-2 family members. Hence we proposed that xanthorrhizol could be used as an anti-liver cancer drug for future studies.

  6. Cytostatic and genotoxic effect of temephos in human lymphocytes and HepG2 cells.

    Science.gov (United States)

    Benitez-Trinidad, A B; Herrera-Moreno, J F; Vázquez-Estrada, G; Verdín-Betancourt, F A; Sordo, M; Ostrosky-Wegman, P; Bernal-Hernández, Y Y; Medina-Díaz, I M; Barrón-Vivanco, B S; Robledo-Marenco, M L; Salazar, A M; Rojas-García, A E

    2015-06-01

    Temephos is an organophosphorus pesticide that is used in control campaigns against Aedes aegypti mosquitoes, which transmit dengue. In spite of the widespread use of temephos, few studies have examined its genotoxic potential. The aim of this study was to evaluate the cytotoxic, cytostatic and genotoxic effects of temephos in human lymphocytes and hepatoma cells (HepG2). The cytotoxicity was evaluated with simultaneous staining (FDA/EtBr). The cytostatic and genotoxic effects were evaluated using comet assays and the micronucleus technique. We found that temephos was not cytotoxic in either lymphocytes or HepG2 cells. Regarding the cytostatic effect in human lymphocytes, temephos (10 μM) caused a significant decrease in the percentage of binucleated cells and in the nuclear division index as well as an increase in the apoptotic cell frequency, which was not the case for HepG2 cells. The comet assay showed that temephos increased the DNA damage levels in human lymphocytes, but it did not increase the MN frequency. In contrast, in HepG2 cells, temephos increased the tail length, tail moment and MN frequency in HepG2 cells compared to control cells. In conclusion, temephos causes stable DNA damage in HepG2 cells but not in human lymphocytes. These findings suggest the importance of temephos biotransformation in its genotoxic effect.

  7. Induction of apoptosis and inhibition of proliferation in Hep-2 by antisense survivin RNA in vitro

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Objective: To study induction of apoptosis and inhibition of proliferation in Hep-2 by antisense survivin RNA. Methods: Antisense survivin RNA expression vector was constructed and then was transfected to human laryngeal carcinoma cell line Hep-2 by lipofectamine. HpEGFP/survivin cells (transfected with the combinant of antisense survivin RNA) were obstained by using G418. The levels of survivin protein before and after transfection were determined by Western-blot. Proliferation activity was measured by MTT assay. The experiment of colony formation in soft agar was carried out for assessing ability of proliferation of Hep-2 cell. Apoptosis was assessed by flow cytometry and acrdine orange(AO).Results:After antisense survivin RNA plasmids were transfected, the level of survivin protein was inhibited in Hep-2. ComPared with control, proliferation of HpEGFP/survivin cells were suppressed significantly. The experiment of colony formation in soft agar showed the ability of colony formation decreased in HpEGFP/survivin cells compared to control (P<0.05). Apoptosis rate increased about 1.81 folds compared with control. Conclusion: The antisense survivin RNA can partly inhibit the level of survivin protein expression in Hep-2 and can induce apoptosis and inhibit the proliferation of Hep-2 by down-regulating the expression of endogenous survivin in vitro.

  8. Construction of a Hep-2 cell line stably transfected with Livin shRNA.

    Science.gov (United States)

    Wang, S L; Deng, W T; Wen, G F; Li, C W; Zeng, Y J

    2016-01-01

    The aim of this study was to construct a eukaryotic expression plasmid with a short hairpin RNA (shRNA) targeting Livin in order to obtain a stably transfected Hep-2 cell line with a reduced expression of Livin. The shRNA targeting Livin mRNA was designed, and a shRNA plasmid and a negative control plasmid were constructed. After amplification in E. coli, restriction endonuclease digestion and sequence confirmation, the plasmids were transfected into Hep-2 cells using Lipofectamine 2000. The stably transfected cell line was screened using G418, and inhibition of Livin mRNA and protein levels were detected using real-time PCR and western blotting, respectively. pGenesil-Livin-shRNA eukaryotic expression plasmid was successfully constructed and identified by sequencing. Green fluorescent protein (GFP) expression was observed in Hep-2 cells transfected with shRNA plasmids by fluorescence microscopy. The expression levels of Livin mRNA and protein decreased significantly in Hep-2 cells transfected with the shRNA recombinant plasmid. The mRNA level was reduced by 47.17 %, and the protein level was reduced by 34.25 %. The shRNA eukaryotic expression plasmid targeting Livin was successfully constructed, which could significantly inhibit the expression of Livin in laryngeal cancer Hep-2 cells. This provides a basis for future research on the function of Livin in Hep-2 cells, and gene therapy for laryngeal cancer.

  9. [Influencing of hep-2 cell function by RNAi silencing E-cadherin expression].

    Science.gov (United States)

    Tian, Jun; Li, Cheng-wen; Wu, Gui-qing; Sun, Jing; Chen, Qi

    2013-02-26

    To explore the function of human laryngeal carcinoma Hep-2 cell after down-regulating the expression of E-cadherin gene to provide theoretical rationales for gene therapy of laryngeal cancer. According to the GenBank database, 3 pairs of shRNA sequences of E-cadherin gene were designed and synthesized. shRNAs were transfected into the cell line Hep-2 by liposome. Reverse transcription-polymerase chain reaction (RT-PCR) was used to detect the silencing effect of E-cadherin expression. The changed capacity of cell proliferation were detected in vitro by methyl thiazolyl tetrazolium (MTT) assay in the transfected Hep-2 cells and the cell proliferation rate (survival rate) was calculated. And Transwell was used to detect the migratory capacity of Hep-2 cells after siRNA transfection. The E-cadherin gene expression of RNAi transfected Hep-2 cells significantly decreased in interference group. And the proliferation of interference group became markedly enhanced. In Transwell test, the migrated cell numbers in interference group were significant higher than those in negative control group (262 ± 15, 288 ± 12, 292 ± 6 vs 74 ± 8, all P Hep-2 cells. And E-cadherin may be considered as one of gene therapy targets for laryngeal cancer.

  10. Hep par-1: a novel immunohistochemical marker for differentiating hepatocellular carcinoma from metastatic carcinoma.

    Science.gov (United States)

    Hanif, Razia; Mansoor, Samina

    2014-03-01

    To evaluate the diagnostic utility of Hep par-1 in differentiating hepatocellular carcinoma from metastatic carcinoma taking histopathology as a gold standard. Comparative cross-sectional study. Pathology Department, Shaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, from April 2007 to February 2008. Hep par-1 immunohistochemical stain was performed on 60 cases of liver carcinoma, 30 cases each of metastatic and hepatocellular carcinoma. Information regarding patient age, gender, sign and symptoms, radiographic findings, histological grade of tumour, and expression of Hep par-1 on hepatocellular and metastatic carcinoma were recorded on proforma sheet. Sensitivity, specificity, positive and negative predictive values, and accuracy of Hep par-1 were calculated using the formulas. Hep par-1 expression was noted in 25 out of 30 cases of hepatocellular carcinoma (83%). Out of 30 cases of metastatic carcinoma, only one case expressed staining in Hep par-1 is a reliable immunohistochemical marker for cases of hepatocellular carcinoma (HCC). It can be used along with other markers in morphologically difficult cases when differential diagnosis lies between poorly differentiated HCC and metastatic carcinoma of liver.

  11. Suppression of E-cadherin mediates gallotannin induced apoptosis in Hep G2 hepatocelluar carcinoma cells.

    Science.gov (United States)

    Han, Hee Jeong; Kwon, Hee Young; Sohn, Eun Jung; Ko, Hyunsuk; Kim, Bogeun; Jung, Kwon; Lew, Jae Hwan; Kim, Sung-Hoon

    2014-01-01

    Though gallotannin was known to have anti-oxidant and antitumor activity, the underlying antitumor mechanism of gallotannin still remains unclear. Thus, in the present study, antitumor mechanism of gallotannin was elucidated in hepatocellular carcinoma cells. Gallotannin significantly exerted cytotoxicity against Hep G2 and Chang hepatocellular carcinoma cells with the accumulation of the sub-G1 population and increase of terminal deoxynucleotidyltransferasedUTP nick end labeling (TUNEL) positive cells as an apoptotic feature. Also, gallotannin attenuated the expression of pro-caspase9, pro-caspase3, Bcl2 and integrin β1 and cleaved poly(ADP)-ribose polymerase (PARP) in Hep G2 and Chang cancer cells. Furthermore, gallotannin suppressed cell repair motility by wound healing assay and also inhibited cell adhesion in Hep G2 cells. Of note, gallotannin attenuated the expression of epithelial cadherin (E-cadherin) to form cell-cell adhesion from the early stage, and also beta-catenin at late phase in Hep G2 cells. Consistently, Immunofluorescence assay showed that E-cadherin or β-catenin expression was suppressed in a time dependent manner by gallotannin. Furthermore, silencing of E-cadherin by siRNA transfection method enhanced PAPR cleavage, caspase 3 activation and sub G1 population and attenuated the cell adhesion induced by gallotannin in Hep G2 cells. Overall, our findings demonstrate that the disruption of cell adhesion junction by suppression of E-cadherin mediates gallotannin enhanced apoptosis in Hep G2 liver cancer cells.

  12. Antitumor effects of polysaccharide from Sargassum fusiforme against human hepatocellular carcinoma HepG2 cells.

    Science.gov (United States)

    Fan, Sairong; Zhang, Junfeng; Nie, Wenjian; Zhou, Wenyuan; Jin, Liqin; Chen, Xiaoming; Lu, Jianxin

    2017-04-01

    Sargassum fusiforme (Harv.) Setchel, a kind of brown algae, has been applied as a therapeutic for thousands of years. This study was designed to investigate the antitumor effects of the polysaccharide (SFPS) from S. fusiform in liver cancer. The mice inoculated with HepG2 cells were orally administrated with SFPS at the doses of 100, 200 and 400 mg/kg body weight for 28 days. The products from peritoneal macrophages and serum in HepG2-bearing mice were measured. The effect of SFPS-induced cell apoptosis was measured by flow cytometry. Meanwhile, the expression levels of Bax and Bcl-2 were detected. Furthermore, the cytotoxicity of SFPS was evaluated by CCK-8 assay. Results showed that SFPS significantly inhibited growth of human HepG2 cell-transplanted tumor in nude mice, and remarkably increased serum TNF-α, IL-1, NO and IgM levels in HepG2-bearing mice. SFPS also promoted the cytokines (IL-1 and TNF-α) secreted by peritoneal macrophages in HepG2-bearing mice. SFPS exerted a stimulatory effect on apoptosis of HepG2 cells, increased the expression of Bax, and decreased the expression of Bcl-2. The results indicated that SFPS has anti-tumor and immunomodulatory activities at the high concentration, and it could be used as a potential chemopreventative and/or adjuvant chemotherapeutic agent in liver cancer. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Study of a Docker Use-Case for HEP

    Energy Technology Data Exchange (ETDEWEB)

    Kowalkowski, Jim [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Lyon, Adam [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Paterno, Marc [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States)

    2016-01-01

    Over the past few years, container technology has become increasingly promising as a means to seamlessly make our software available across a wider range of platforms. In December 2015, we decided to put together a set of docker images that serve as a demonstration of this container technology for managing a run-time environment for art-related software projects, and also serve as a set of test cases for evaluation of performance. Docker[1] containers provide a way to “wrap up a piece of software in a complete filesystem that contains everything it needs to run”. In combination with Shifter[2], such containers provide a way to run software developed and deployed on “typical” HEP platforms (such as SLF 6, in common use at Fermilab and on OSG platforms) on HPC facilities at NERSC. Docker containers provide a means of delivering software that can be run on a variety of hosts without needing to be compiled specially for each OS to be supported. This could substantially reduce the effort required to create and validate a new release, since one build could be suitable for use on both grid machines (both FermiGrid and OSG) as well as any machine capable of running the Docker container. In addition, docker containers may provide for a quick and easy way for users to install and use a software release in a standardized environment. This report contains the results and status of this demonstration and evaluation.

  14. Involving the public into HEP through IT challenges and projects

    CERN Document Server

    Adam Bourdarios, Claire; The ATLAS collaboration

    2016-01-01

    The ATLAS collaboration has recently setup three outreach projects and global challenges which have a strong IT component and could not have been envisaged without the growth of general public computing resources and network connectivity. HEP has exciting and difficult problems like the extraction of the Higgs boson signal, and at the same time data scientists have advanced algorithms. The goal of the Higgs Machine Learning (HiggsML) project was to bring the two together by a “challenge”: machine learning experts could compete online to obtain the best Higgs→ττ signal significance on a set of ATLAS fully simulated Monte Carlo signal and background events. The first challenge of this kind ran from May to September 2014, drawing considerable attention, and new projects followed in the context of the CERN open data initiative. Higgs Hunters is the only physics-related project hosted on a web-based citizen science platform called Zooniverse. Volunteers usually contributing to space, natural world and huma...

  15. Mining knowledge for HEp-2 cell image classification.

    Science.gov (United States)

    Perner, Petra; Perner, Horst; Müller, Bernd

    2002-01-01

    HEp-2 cells are used for the identification of antinuclear autoantibodies (ANAs). They allow for recognition of over 30 different nuclear and cytoplasmic patterns, which are given by upwards of 100 different autoantibodies. The identification of the patterns has recently been done manually by a human inspecting the slides with a microscope. In this paper, we present results on the analysis and classification of cells using image analysis and data mining techniques. Starting from a knowledge acquisition process with a human operator, we developed an image analysis and feature extraction algorithm. The collection of the dataset was done based on an expert's image reading and based on the automatic extracted features. A dataset containing 132 features for each entry was set up and given to a data mining algorithm to find out the relevant features among this large feature set and to construct the classification knowledge. The classifier was evaluated by cross validation. The results gave the expert new insights into the necessary features and the classification knowledge and show the feasibility of an automated inspection system.

  16. An Electronic Logbook for the HEP Control Room

    Institute of Scientific and Technical Information of China (English)

    G.Roediger; P.Pomatto; 等

    2001-01-01

    The Control Room Logbook(CRL)is designed to improve and replace the paper logbooks traditionally used in the HEP accelerator control room.Its features benefit the on-line coordinator,the shift operators,and the remote observers,This paper explains some of the most attractive features for each of these roles.The features include the ability to configure the logbook for the specific needs of a collaboration,a large variety of entry types operator can add by simply clicking and dragging,and a flexible web interface for the remote observer to keep up with control room activities.The entries are saved as UTF-8 based XML files,which allowed us to give the data structure and meaning such that it can easily be parsed in the present and far into the future.The XML tag data is also indexed in a relational database,making queries on dates,keyworks,entry type and other criteria feasible and fast .The CRL is used in the D0 control room.This presentation also discusses our experience with deployment,platform independence and other interesting issues that arose with the installation and use of logbook.

  17. Initial study on apoptosis in HepG-2 Human heptocarcinoma cell line by CSS

    Institute of Scientific and Technical Information of China (English)

    YU Lei; CUI Rong-tian; MO Ke; WANG Wei; JI Yu-bin; ZOU Xiang

    2008-01-01

    Objective To discuss on mechanism of the killing and apoptosis inducing effect induced by total alkaloid in the CSS(Capparis spinosa L. saponin, CSS)on human hepatocarcinoma cell Line HepG-2. Methods The killing effect of the CSS on human hepatocarcinoma cell Line HepG-2 was observed by MTT method. Morphological observation of the HepG-2 cells was completed by fluorescence microscope. This test was signed to observe the changes of the cell cycle of HepG-2 cells affected by the CSS by PI single-staining, and to observe if there were typical apoptosis peaks. The apoptosis inducing effect and changing of mitochondria membrane potential of the CSS on the HepG-2 cells were studied by flow cytometry. The effect of intraceUular Ca2+ level of CSS on the HepG-2 cells was measured by laser confocal microscope. Results CSS has growth inhibiting on the HepG-2 and seems to be enhanced with the increasing concentration of CSS, and its IC50 value was 46.16 μg·mL-1. The HepG-2 cells are characteristic apoptosis morphologic changed, and the apoptosis percentage is increased to 66.652 % in the 50 μg·mL-1 dosage group. The cells cycle has been changed obviously that the progresses of cells cycle of G1 period and G2 period in high dosage group have been blocked, and the cellular proportion in G2 period is decreased by the function of CSS for 24 h. The mitochondria membrane potential of HepG-2 cells induced by CSS is decreased in various degrees. In addition, the intracellular Ca2+ level is increased by the function of CSS in the middle and high dose groups. Conclusions The CSS has obviously killing and apoptosis inducing effect on human hepatoearcinoma cell Line HepG-2 by the mechanism of decreasing the mitochondria membrane potential and increasing the intracellular Ca2+ level.

  18. TGF-β1 promotes human hepatic carcinoma HepG2 cells invasion by upregulating autophagy.

    Science.gov (United States)

    Ma, C-L; Qiao, S; Li, Y-C; Wang, X-F; Sun, R-J; Zhang, X; Qian, R-K; Song, S-D

    2017-06-01

    To study the role of TGF-β1 in autophagy and invasion ability of human hepatic carcinoma HepG2 cells. Cultured HepG2 cells were treated with different concentrations of TGF-β1 for 24 h. The protein expression levels of autophagy relative marker LC3 and Beclin1 were detected by Western blot. The effect of TGF-β1 on invasion ability of HepG2 cells was detected with transwell method. The results demonstrated that TGF-β1 was able to activate autophagy of HepG2 cells in a dose-dependent manner. Autophagy inhibitor 3-methyladenine (3-MA) could reverse TGF-β1 induced autophagy process. Also, TGF-β1 significantly promotes the invasion ability of HepG2 cells; however, this process could effectively reverse by autophagy inhibitor 3-MA. TGF-β1 enhances HepG2 cells invasion by upregulating autophagy.

  19. HepML, an XML-based format for describing simulated data in high energy physics

    Science.gov (United States)

    Belov, S.; Dudko, L.; Kekelidze, D.; Sherstnev, A.

    2010-10-01

    In this paper we describe a HepML format and a corresponding C++ library developed for keeping complete description of parton level events in a unified and flexible form. HepML tags contain enough information to understand what kind of physics the simulated events describe and how the events have been prepared. A HepML block can be included into event files in the LHEF format. The structure of the HepML block is described by means of several XML Schemas. The Schemas define necessary information for the HepML block and how this information should be located within the block. The library libhepml is a C++ library intended for parsing and serialization of HepML tags, and representing the HepML block in computer memory. The library is an API for external software. For example, Matrix Element Monte Carlo event generators can use the library for preparing and writing a header of an LHEF file in the form of HepML tags. In turn, Showering and Hadronization event generators can parse the HepML header and get the information in the form of C++ classes. libhepml can be used in C++, C, and Fortran programs. All necessary parts of HepML have been prepared and we present the project to the HEP community. Program summaryProgram title: libhepml Catalogue identifier: AEGL_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEGL_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU GPLv3 No. of lines in distributed program, including test data, etc.: 138 866 No. of bytes in distributed program, including test data, etc.: 613 122 Distribution format: tar.gz Programming language: C++, C Computer: PCs and workstations Operating system: Scientific Linux CERN 4/5, Ubuntu 9.10 RAM: 1 073 741 824 bytes (1 Gb) Classification: 6.2, 11.1, 11.2 External routines: Xerces XML library ( http://xerces.apache.org/xerces-c/), Expat XML Parser ( http://expat.sourceforge.net/) Nature of problem: Monte Carlo simulation in high

  20. iTRAQ protein profile analysis of neuroblastoma (NA) cells infected with the rabies viruses rHep-Flury and Hep-dG

    Science.gov (United States)

    Yang, Youtian; Liu, Wenjun; Yan, Guangrong; Luo, Yongwen; Zhao, Jing; Yang, Xianfeng; Mei, Mingzhu; Wu, Xiaowei; Guo, Xiaofeng

    2015-01-01

    The rabies virus (RABV) glycoprotein (G) is the principal contributor to the pathogenicity and protective immunity of RABV. In a previous work, we reported that recombinant rabies virus Hep-dG, which was generated by reverse genetics to carry two copies of the G-gene, showed lower virulence than the parental virus rHep-Flury in suckling mice with a better immune protection effect. To better understand the mechanisms underlying rabies virus attenuation and the role of glycoprotein G, isobaric tags for relative and absolute quantitation (iTRAQ) was performed to identify and quantify distinct proteins. 10 and 111 differentially expressed proteins were obtained in rHep-Flury and Hep-dG infection groups, respectively. Selected data were validated by western blot and qRT-PCR. Bioinformatics analysis of the distinct protein suggested that glycoprotein over-expression in the attenuated RABV strain can induce activation of the interferon signaling. Furthermore, it may promote the antiviral response, MHC-I mediated antigen-specific T cell immune response, apoptosis and autophagy in an IFN-dependent manner. These findings might not only improve the understanding of the dynamics of RABV and host interaction, but also help understand the mechanisms underlying innate and adaptive immunity during RABV infection. PMID:26217322

  1. Hypoxia promotes radioresistance of CD133-positive Hep-2 human laryngeal squamous carcinoma cells in vitro.

    Science.gov (United States)

    Wang, Maoxin; Li, Xiaoming; Qu, Yongtao; Xu, Ou; Sun, Qingjia

    2013-07-01

    Hypoxia promotes the radioresistance of laryngeal carcinomas and CD133 is one of the markers expressed by tumor-initiating, human laryngeal carcinoma cells. In order to investigate whether CD133-positive Hep-2 cells exhibit a radioresistant phenotype and to determine whether hypoxia promotes this phenotype, we performed a series of experiments. Hep-2 cells, and Hep-2 cells stably expressing hypoxia-inducible factor (HIF)-targeted small interfering RNA (siRNA) were cultured under hypoxic and normoxic conditions and were treated with varying doses of γ-rays (0, 5, 10, 15 and 20 Gy). MTT and cell cycle assays were subsequently performed. Using fluorescence-activated cell sorting (FACS), CD133-positive Hep-2 cells and CD133-positive HIF-siRNA Hep-2 cells were isolated. These cells were grown as spheres under hypoxic and normoxic conditions for MTT and soft agar colony formation assays. The expression levels of DNA-dependent protein kinase catalytic subunit (DNA-PKcs), survivin, p53 and ataxia-telangiectasia mutated (ATM) were also assayed using flow cytometry. The data showed that the growth of Hep-2 cells exposed to hypoxic conditions and treated with 10 Gy radiation (group A) was less compared to that of groups B-D (PHep-2 cells grown under hypoxic conditions and exposed to irradiation (group E) (P0.05). In conclusion, CD133-positive Hep-2 cells exhibited a radioresistant phenotype that was enhanced with hypoxia. Furthermore, an increase in DNA-PK activity was associated with this enhancement.

  2. Overexpression of Bmi‑1 promotes epithelial‑mesenchymal transition in CD133+Hep G2 cells.

    Science.gov (United States)

    Zhang, Zefeng; Wang, Qiyi; Bu, Xiaoling; Zhang, Chuangqiang; Chen, Hao; Sha, Weihong; Liu, Wanwei

    2017-08-24

    Cancer stem cells (CSCs) and epithelial‑mesenchymal transition (EMT) are critical factors contributing to tumor metastasis and recurrence. The BMI1 proto‑oncogene (Bmi‑1) promotes the development and progression of hematologic malignancies and of several types of solid tumors. The aim of the present study was to explore the mechanism by which Bmi‑1 may promote invasion and migration of hepatocellular carcinoma Hep G2 cells. CD133 antigen is a transmembrane glycoprotein and regarded as a cancer stem cells marker in hepatocellular carcinoma. CD133+Hep G2 cells were enriched by magnetic‑activated cell sorting and exhibited greater viability compared with CD133‑Hep G2 cells, as measured by Cell Counting kit‑8 assay. Then, Bmi‑1 was overexpressed in CD133+Hep G2 cells by transfection with the Bmi‑1/pcDNA3.1(+) expression plasmid, and overexpression was confirmed by reverse‑transcription‑polymerase chain reaction and western blotting. Overexpression of Bmi‑1in CD133+Hep G2 cells resulted in the downregulation of E‑cadherin and upregulation of Vimentin at the protein level. The invasion and migration abilities of CD133+Hep G2 cells were increased in the Bmi‑1/pcDNA3.1(+)‑transfected group, as measured by Transwell invasion and wound healing assays, respectively. In conclusion, Bmi‑1 promoted invasion and migration of CD133+Hep G2 cells most likely through inducing EMT. The present findings may offer a potential novel target for the development of hepatocellular carcinoma therapies.

  3. Inhibition of aldose reductase ameliorates ethanol‑induced steatosis in HepG2 cells.

    Science.gov (United States)

    Qiu, Longxin; Cai, Chengchao; Zhao, Xiangqian; Fang, Yan; Tang, Weibiao; Guo, Chang

    2017-05-01

    Aldose reductase (AR) expression is increased in liver tissue of patients with ethanol‑induced liver disease. However, the exact role of AR in the development of ethanol‑induced liver disease has yet to be elucidated. The present study aimed to determine the effect of an AR inhibitor on ethanol‑induced steatosis in HepG2 cells and to identify possible underlying molecular mechanisms. Steatosis was induced in HepG2 cells by stimulating cells with 100 mM absolute ethanol for 48 h. Oil Red O staining was used to detect the lipid droplet accumulation in cells. Western blot analyses were used to determine protein expression levels and reverse transcription‑quantitative polymerase chain reaction was used to analyze mRNA expression levels. The results showed that AR protein expression was elevated in HepG2 cells stimulated with ethanol. HepG2 cells exhibited marked improvement of ethanol‑induced lipid accumulation following treatment with the AR inhibitor zopolrestat. Phosphorylation levels of 5' adenosine monophosphate‑activated protein kinase (AMPK) were markedly higher, whereas the mRNA expression levels of sterol‑regulatory element‑binding protein (SREBP)‑1c and fatty acid synthase (FAS) were significantly lower in zopolrestat‑treated and ethanol‑stimulated HepG2 cells compared with in untreated ethanol‑stimulated HepG2 cells. In addition, zopolrestat inhibited the ethanol‑induced expression of tumor necrosis factor (TNF)‑α. These results suggested that zopolrestat attenuated ethanol‑induced steatosis by activating AMPK and subsequently inhibiting the expression of SREBP‑1c and FAS, and by suppressing the expression of TNF‑α in HepG2 cells.

  4. Developmental Stage-Specific Embryonic Induction of HepG2 Cell Differentiation.

    Science.gov (United States)

    Li, Yanning; Zong, Yanhong; Xiao, Zhigang; Zhu, Mengxuan; Xiao, Hui; Qi, Jinsheng; Liu, Kun; Wang, Hui

    2016-04-01

    Although hepatocellular carcinoma cells can sometimes undergo differentiation in an embryonic microenvironment, the mechanism is poorly understood. The developmental stage-specific embryonic induction of tumor cell differentiation was investigated. Both chick and mouse liver extracts and hepatoblast-enriched cells at different developmental stages were used to treat human hepatoma HepG2 cells, and the effects on the induction of differentiation were evaluated. The nuclear factors controlling differentiation, hepatocyte nuclear factor (HNF)-4α, HNF-1α, HNF-6 and upstream stimulatory factor-1 (USF-1), and the oncogene Myc and alpha-fetoprotein (AFP) were measured. HNF-4α RNA interference was used to verify the role of HNF-4α. Embryonic induction effects were further tested in vivo by injecting HepG2 tumor cells into immunodeficient nude mice. The 9-11-days chick liver extracts and 13.5-14.5-days mouse hepatoblast-enriched cells could inhibit proliferation and induce differentiation of HepG2 cells, leading to either death or maturation to hepatocytes. The maturation of surviving HepG2 cells was confirmed by increases in the expressions of HNF-4α, HNF-1α, HNF-6, and USF-1, and decreases in Myc and AFP. The embryonic induction of HepG2 cell maturation could be attenuated by HNF-4α RNA interference. Furthermore, the 13.5-days mouse hepatoblast culture completely eliminated HepG2 tumors with inhibited Myc and induced HNF-4α, confirming this embryonic induction effect in vivo. This study demonstrated that developmental stage-specific embryonic induction of HepG2 cell differentiation might help in understanding embryonic differentiation and oncogenesis.

  5. Altered cellular metabolism of HepG2 cells caused by microcystin-LR.

    Science.gov (United States)

    Ma, Junguo; Feng, Yiyi; Jiang, Siyu; Li, Xiaoyu

    2017-06-01

    This study aimed to evaluate the possible effects of microcystin-LR (MC-LR) exposure on the metabolism and drug resistance of human hepatocellular carcinoma (HepG2) cells. For this purpose, we first conducted an experiment to make sure that MC-LR could penetrate the HepG2 cell membrane effectively. The transcriptional levels of phase I (such as CYP2E1, CYP3A4, and CYP26B1) and phase II (such as EPHX1, SULTs, and GSTM) enzymes and export pump genes (such as MRP1 and MDR1) were altered by MC-LR-exposure for 24 h, indicating that MC-LR treatment may destabilize the metabolism of HepG2 cells. Further research showed that the CYP inducers omeprazole, ethanol, and rifampicin inhibited cell viability, in particular, ethanol, a CYP2E1 inducer, induced ROS generation, lipid peroxidation, and apoptosis in HepG2 cells treated with MC-LR. The CYP2E1 inhibitor chlormethiazole inhibited ROS generation, mitochondrial membrane potential loss, caspase-3 activity, and cytotoxicity caused by MC-LR. Meanwhile, the results also showed that co-incubation with the ROS scavenger l-ascorbic acid and MC-LR decreased ROS levels and effectively prevented apoptosis. These findings provide an interesting mechanistic explanation of cellular metabolism associated with MC-LR, i.e., MC-LR-exposure exerted toxicity on HepG2 cells and induced apoptosis of HepG2 cells via promoting CYP2E1 expression and inducing excessive ROS in HepG2 cells. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Ammonia metabolism capacity of HepG2 cells with high expression of human glutamine synthetase

    Institute of Scientific and Technical Information of China (English)

    Nan-Hong Tang; Xiao-Qian Wang; Xiu-Jin Li; Yan-Ling Chen

    2008-01-01

    BACKGROUND:Currently, one of the tough problems for the application of bioartiifcial liver (BAL) is the shortage of suitable hepatocytes. There are reports on different types of BAL assistance developed with porcine hepatocytes and HepG2 C3A cells, but their defects are obvious. In recent years, some studies focus more on liver cells with features of human origin and improved detoxiifcation. In this study, a hepatocyte line with high expression of human glutamine synthetase (hGS) was raised and its capacity for ammonia metabolism was investigated. METHODS:hGS cDNA and alpha-fetoprotein transcription regulatory element (AFP-TRE) were cloned with the designed primers. The eukaryotic expression vectors, pLNChGS and pLNAFhGS, were constructed and transfected into PA317 cells. Recombinant retroviruses (Retro-hGS and Retro-AFhGS) were produced and then infected into HepG2 cells. G418-resistant cell clones, HepG2/pLNChGS and HepG2/pLNAFhGS, were selected and ampliifed. Then hGS mRNA was measured by semi-quantitative RT-PCR;hGS enzymatic activity and ammonia metabolism analysis in different concentration of NH4+were detected with a quantitative biochemistry kit. The cell proliferation was also detected by MTT chromatometry. RESULTS:The expression of hGS mRNA in HepG2/pLNChGS cells (8.306±0.336) and HepG2/pLNAFhGS cells (21.358±1.716) was much stronger than in control cells (P CONCLUSION:The constructed hepatocytes (HepG2 cells) with speciifc high-expression of hGS have a powerful ability to degrade ammonia in vitro, and provide necessary experimental data for the selection of biomaterials in BAL.

  7. Silibinin induced the apoptosis of Hep-2 cells via oxidative stress and down-regulating survivin expression.

    Science.gov (United States)

    Yang, Xinxin; Li, Xiaoyu; An, Liangxiang; Bai, Bo; Chen, Jing

    2013-08-01

    Silibinin is an anticancer and chemopreventive natural compound, which is extracted from milk thistle (Silybum marianum). It is reported that silibinin has anticancer efficacy in many malignant tumors. Laryngeal carcinoma is the second most common head and neck squamous carcinoma. In the present work, we investigated the effects of silibinin on laryngeal squamous cell carcinoma (LSCC) cell line Hep-2 cells. We found that silibinin induced the decrease of cell viability in Hep-2 cells with a concentration- and time-dependent manner. Moreover, silibinin resulted in the apoptosis of Hep-2 cells and had synergy effects with arsenic trioxide. Intracellular reactive oxygen species (ROS) accumulation increased because of silibinin exposure. ROS scavenger NAC alleviated the cytotoxicity of silibinin to Hep-2 cells. The mitochondrial membrane potential (MMP) was lost in Hep-2 cells treated with silibinin. Subsequently, silibinin induced the activation of caspase-3 in Hep-2 cells and caspase inhibitor Z-VAD-FMK inhibited the cytotoxicity of silibinin in Hep-2 cells. The survivin expression decreased after Hep-2 cells were treated with silibinin. In conclusion, silibinin induced the apoptosis of Hep-2 cells via oxidative stress and down-regulating survivin expression. Therefore, silibinin is a potential therapeutical agent against LSCC in future.

  8. Pro-apoptotic effects of tectorigenin on human hepatocellular carcinoma HepG2 cells

    Science.gov (United States)

    Jiang, Chun-Ping; Ding, Hui; Shi, Da-Hua; Wang, Yu-Rong; Li, Er-Guang; Wu, Jun-Hua

    2012-01-01

    AIM: To investigate the effects of tectorigenin on human hepatocellular carcinoma (HCC) HepG2 cells. METHODS: Tectorigenin, one of the main components of rhizome of Iris tectorum, was prepared by simple methods, such as extraction, filtration, concentration, precipitation and recrystallization. HepG2 cells were incubated with tectorigenin at different concentrations, and their viability was assessed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay. Apoptosis was detected by morphological observation of nuclear change, agarose gel electrophoresis of DNA ladder, and flow cytometry with Hoechst 33342, Annexin V-EGFP and propidium iodide staining. Generation of reactive oxygen species was quantified using DCFH-DA. Intracellular Ca2+ was monitored by Fura 2-AM. Mitochondrial membrane potential was monitored using Rhodamine 123. Release of cytochrome c from mitochondria to cytosol was detected by Western blotting. Activities of caspase-3, -8 and -9 were investigated by Caspase Activity Assay Kit. RESULTS: The viability of HepG2 cells treated by tectorigenin decreased in a concentration- and time-dependent manner. The concentration that reduced the number of viable HepG2 cells by 50% (IC50) after 12, 24 and 48 h of incubation was 35.72 mg/L, 21.19 mg/L and 11.06 mg/L, respectively. However, treatment with tectorigenin at 20 mg/L resulted in a very slight cytotoxicity to L02 cells after incubation for 12, 24 or 48 h. Tectorigenin at a concentration of 20 mg/L greatly inhibited the viability of HepG2 cells and induced the condensation of chromatin and fragmentation of nuclei. Tectorigenin induced apoptosis of HepG2 cells in a time- and dose-dependent manner. Compared with the viability rate, induction of apoptosis was the main mechanism of the anti-proliferation effect of tectorigenin in HepG2 cells. Furthermore, tectorigenin-induced apoptosis of HepG2 cells was associated with the generation of reactive oxygen species, increased intracellular [Ca2+]i

  9. Diagnóstico y tratamiento de la Encefalopatía Hepática

    Directory of Open Access Journals (Sweden)

    Sánchez Juan Carlos

    2013-06-01

    Full Text Available La encefalopatía hepática es un síndrome neuropsiquiátrico complejo que se observa con gran frecuencia en el paciente con cirrosis hepática crónica. El aspecto fundamental en su fisiopatología es el acceso de sangre delterritorio portal a la circulación sistémica. Esto causa la exposición del cerebro a concentraciones elevadas de sustancias tóxicas, principalmente el amonio, que provocan alteraciones en los astrocitos y defectos en la neurotransmisión.El diagnóstico se establece al demostrar manifestaciones neurológicas compatibles, signos de enfermedad hepática y haber descartado otras enfermedades neurológicas que pueden ocasionar manifestaciones similares.El manejo de la encefalopatía hepática se basa en mantener y minimizar complicaciones médicas del paciente con cirrosis hepática, en corregir los factores precipitantes. En la actualidad se están investigando una serie de moléculas que afectan al metabolismo del amoniaco y que podrían tener un papel en la terapéutica como son la lactulosa y la L-Ornitina y L-Aspartato.

  10. Habitat Evaluation Procedures (HEP) Report : West Beaver Lake, 2004-2005 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-02-01

    On September 7, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the West Beaver Lake property, an acquisition completed by the Kalispel Tribe of Indians in September 2004. Evaluation species and appropriate models include bald eagle, black-capped chickadee, mallard, muskrat, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The West Beaver Lake Project provides a total of 103.08 Habitat Units (HUs) for the species evaluated. Emergent wetland habitat provides 7.17 HUs for mallard and muskrat. Conifer forest habitat provides 95.91 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. The objective of using HEP at the West Beaver Lake Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  11. Midkine accumulated in nucleolus of HepG2 cells involved in rRNA transcription

    Institute of Scientific and Technical Information of China (English)

    Li-Cheng Dai; Jian-Zhong Shao; Li-Shan Min; Yong-Tao Xiao; Li-Xin Xiang; Zhi-Hong Ma

    2008-01-01

    AIM: To invesgate the ultrastructural location of midkine (MK) in nucleolus and function corresponding to its location. METHODS: To investigate the ultrastructural location of MK in nucleolus with immunoelectronic microscopy. To study the role that MK plays in ribosomal biogenesis by real-time PCR. The effect of MK on anti-apoptotic activity of HepG2 cells was studied with FITC-conjugated annexin V and propidium iodide PI double staining through FACS assay. RESULTS: MK mainly localized in the granular component (GC), dense fibrillar component (DFC) and the border between the DF-C and fibrillar center (FC). The production of 45S precursor rRNA level was decreased significantly in the presence of IK antisense oligonucleotide in the HepG2 cells. Furthermore, it was found that exogenous MK could protect HepG2 from apoptosis significantly. CONCLUSION: NK was constitutively translocated to the nucleolus of HepG2 cells, where it accumulated and mostly distributed at DFC, GC components and at the region between FC and DFC, MK played an important role in rRNA transcription, ribosome biogenesis, and cell proliferation in HepG2 cells. MK might serve as a molecular target for therapeutic intervention of human carcinomas.

  12. Habitat Evaluation Procedures (HEP) Report; Calispell Creek Project, Technical Report 2004-2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-02-01

    On July 13, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Calispell Creek property, an acquisition completed by the Kalispel Tribe of Indians in February 2004. Evaluation species and appropriate models include Canada goose, mallard, muskrat, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Calispell Creek Project provides a total of 138.17 Habitat Units (HUs) for the species evaluated. Emergent wetland habitat provides 5.16 HUs for mallard and muskrat. Grassland provides 132.02 HUs for mallard and Canada goose. Scrub-shrub vegetation provides 0.99 HUs for yellow warbler and white-tailed deer. The objective of using HEP at the Calispell Creek Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  13. Effects of sargentgloryvine stem extracts on HepG-2 cells in vitro and in vivo

    Institute of Scientific and Technical Information of China (English)

    Ming-Hua Wang; Min Long; Bao-Yi Zhu; Shu-Hui Yang; Ji-Hong Ren; Hui-Zhong Zhang

    2011-01-01

    AIM: To observe the effects of sargentgloryvine stem extracts (SSE) on the hepatoma cell line HepG-2 in vitro and in vivo and determine its mechanisms of action.METHODS: Cultured HepG-2 cells treated with SSE were analysed by 3-(4,5-Dimethyl-thiazol-2-yl)-2,5-Diphenyltetrazolium bromide and clone formation assay.The cell cycle and apoptosis analysis were conducted by flow cytometric, TdT-Mediated dUTP Nick End Labeling and acridine orange/ethidium bromide staining methods,and protein expression was examined by both reverse transcriptase-polymerase chain reaction and Western blotting.The pathological changes of the tumor cells were observed by haematoxylin and eosin staining. Tumor growth inhibition and side effects were determined in a xenograft mouse model.RESULTS: SSE treatment could not only inhibit HepG-2 cell proliferation in a dose- and time-dependent manner but also induce apoptosis and cell cycle arrest at the S phase. The number of colonies formed by SSEtreated tumor cells was fewer than that of the controls (P 0.05). Systemic administration of SSE could inhibit the HepG-2 xenograft tumor growth with no obvious toxic side effects on normal tissues.CONCLUSION: SSE can induce apoptosis of HepG-2 cells in vitro and in vivo through decreasing expression of Bcl-xl and Mcl-1 and increasing expression of Bax.

  14. Adenovirus with p16 gene exerts antitumor effect on laryngeal carcinoma Hep2 cells.

    Science.gov (United States)

    Yang, Zhengang; Hu, Jingxia; Li, Dajun; Pan, Xinliang

    2016-08-01

    Laryngeal cancer is an uncommon form of cancer. The tumor suppressor P16, known to be mutated or deleted in various types of human tumor, including laryngeal carcinoma, is involved in the formation and development of laryngeal carcinoma. It has been previously reported that the inactivation or loss of P16 is associated with the acquisition of malignant characteristics. The current study hypothesized that restoring wild‑type P16 activity into P16‑null malignant Hep2 cells may exert an antitumor effect. A recombinant adenovirus carrying the P16 gene (Ad‑P16) was used to infect and express high levels of P16 protein in P16‑null Hep2 cells. Cell proliferation and invasion assays and polymerase chain reaction were performed to evaluate the effects of the P16 gene on cell proliferation and the antitumor effect on Hep2 cells. The results demonstrated that the Hep2 cells infected with Ad‑P16 exhibited significantly reduced cell proliferation, invasion and tumor volume compared with untreated or control adenovirus cells. Furthermore, the expression of laryngeal carcinoma‑associated genes, EGFR, survivin and cyclin D1, were measured in Ad‑P16‑infected cells and were significantly reduced compared with control groups. The results of the current study demonstrate that restoring wild‑type P16 activity into P16-null Hep2 cells exerts an antitumor effect.

  15. CXCR4 silencing inhibits invasion and migration of human laryngeal cancer Hep-2 cells.

    Science.gov (United States)

    Niu, Juntao; Huang, Yongwang; Zhang, Lun

    2015-01-01

    CXCR4 has been reported in various types of human cancer, which is associated with cancer progression and metastasis. However, the investigation of CXCR4 in laryngeal cancer is extremely rare. In the present study, we used lentivirus-mediated shRNA targeting CXCR4 to silenced CXCR4 expression in Hep-2 cells and evaluated the effect of long-term suppression of CXCR4 on Hep-2 growth and metastasis. The Cell proliferation was analyzed by MTS assay, and the invasion and metastasis potentials were analyzed using wound healing and transwell assays, respectively. Our results showed that lentivirus-mediated shRNA effectively infected Hep-2 cells and suppressed CXCR4 expression, and inhibited cell growth of Hep-2 cells. Cell invasion and apoptosis were decreased concomitantly with the reduction in CXCR4 protein expression. Further analysis revealed that CXCR4 silencing caused the reducion of CXCR4, CXCL12, TIMP2, VEGF and MMP9, and the phosphorylation levels of IκB, AKT and MAPK, and also decreased the activity of NF-κB. These results suggested that knockdown of CXCR4 inhibits the invasion and metastasis of Hep-2 through PI3K/AKT and MAPK signaling pathways, by decreasing NF-κB activities to down-regulate VEGF, TIMP-2 and MMP-9 expression. These data demonstrate that the inhibition of CXCR4 may be an effective interventional therapeutic strategy in laryngeal cancer.

  16. Buckwheat trypsin inhibitor enters Hep G2 cells by clathrin-dependent endocytosis.

    Science.gov (United States)

    Cui, Xiaodong; Wang, Zhuanhua; Li, Yuying; Li, Chen

    2013-12-01

    Recombinant buckwheat trypsin inhibitor (rBTI) was studied to evaluate if it could enter cancer cells and to determine the mechanism. Fluorescein isothiocyanate-labelled buckwheat trypsin inhibitor (FITC-BTI) entered Hep G2 cells in a concentration-dependent manner. FITC-BTI colocalised with labelled transferrin (Tf) in the punctate structure, implying that rBTI enters Hep G2 cells by clathrin-dependent endocytosis. Incubation of Hep G2 cells with different chemical inhibitors abolished diffuse, but not punctate fluorescence, thus indicating that membrane potential plays a critical role in this process. Impairment of clathrin-mediated endocytosis by RNAi with clathrin heavy chain greatly reduced or completely abolished both diffuse and punctate fluorescence, further supporting a theory of a single route of endocytosis. Consistent with our working hypothesis, Hep G2 cells which were arrested in the M phase did not show any vesicular or diffuse FITC-BTI. We conclude from these results that both endocytosis and membrane potential are required for rBTI entry into Hep G2 cells. Copyright © 2013 Elsevier Ltd. All rights reserved.

  17. Peroxiredoxin 3 is resistant to oxidation-induced apoptosis of Hep-3b cells.

    Science.gov (United States)

    Wang, Y-G; Li, L; Liu, C-H; Hong, S; Zhang, M-J

    2014-06-01

    Although peroxiredoxin 3 (PRX3) was reported to be overexpressed in liver cancer, the precise function of PRX3 in the development and/or progression of liver cancer remained to be obscure. The present study was conducted to investigate the response of PRX3 to oxidative stress in hepatocellular carcinoma (HCC) cells. After successful knockdown of PRX3 expression by small interfering RNA, we treated HCC cell lines Hep-3b and Hep-G2 with gradient concentrations of H2O2 and detected cell proliferation, apoptosis, and the level of reactive oxygen species (ROS) in the cells. After low-dose (5-20 μmol/l) H2O2 treatment, the ROS level was significantly higher in PRX3-knockdown Hep-3b cells than in controls. In addition, PRX3 down-regulation resulted in decreased proliferation, increased apoptosis, and increased caspase 3 activity of Hep-3b cells. We did not notice significant difference between PrxIII knockdown and control Hep-G2 cells in ROS level, cell viability or apoptosis. Our results suggest that PRX3 is an indispensable ROS scavenger that protects tumor cells against oxidative damage and subsequent apoptosis, which provides a clue that PRX3 may be involved in the chemotherapeutic resistance of liver cancer. The underlying mechanism for PRX3 function needs further investigation.

  18. Isolectins of phytohemagglutinin are able to induce apoptosis in HEp-2 carcinoma cells in vitro.

    Science.gov (United States)

    Kochubei, T O; Maksymchuk, O V; Piven, O O; Lukash, L L

    2015-06-01

    To study the effects of total phytohemagglutinin (PHA) and its isolectins on cell death and apoptosis in human HEp-2 carcinoma cells and to analyze the possible molecular mechanisms of lectin induced apoptosis. The commercial preparation of the kidney beans (Phaseolus vulgaris) lectins and HEp-2 cells were used. Apoptosis index was determined using acridine orange and ethidium bromide staining. The expression levels of apoptosis mediator cleaved caspase-3 and proapoptotic Bax protein were studied by Western blot analysis. The gene expression levels were analyzed by qPCR. PHA and its isolectins induced apoptosis in HEp-2 cells accompanied by the increased expression of caspase-3 cleaved form, with PHA-E being the most effective. The treatment of HEp-2 cells with PHA or its isolectins resulted in a marked increase of Bax on both mRNA and protein levels. PHA and its isolectins were shown to induce the apoptosis in human HEp-2 carcinoma cells via increasing proapoptotic protein Bax and activating caspases-3.

  19. 龙葵碱诱导HepG2细胞凋亡的观察%Study of solanine on apoptosis in HepG2 cell

    Institute of Scientific and Technical Information of China (English)

    高世勇; 邹翔; 汲晨锋; 王宏亮

    2007-01-01

    观察龙葵碱对3种消化系统肿瘤细胞株人肝癌细胞HepG2、人胃癌细胞SGC-7901、人大肠癌细胞Ls-174的细胞毒作用.并从细胞凋亡角度揭示龙葵碱对敏感细胞株的作用机制.采用MTT法观察龙葵碱对3种肿瘤细胞株的细胞毒作用;采用AO/EB双染,激光共聚焦扫描显微术(eonfocal)观察龙葵碱对HepG,肿瘤细胞形态的影响;PI单染,流式细胞仪测定龙葵碱诱导HepG2细胞凋亡的凋亡率及对细胞周期的影响.龙葵碱作用于HepG2、SGC-7901、LS-174的IC50分别为14.47μg/mL、>50μg/mL、>50μg/mL;在形态学观察实验中,阴性对照组细胞形态正常,0.003 2μg/mL、0.016μg/mL龙葵碱使细胞外周呈微弱皱缩状改变,0.08、0.4、2μg/mL龙葵碱使HepG2细胞出现大量碎片及凋亡小体等典型的细胞凋亡形态.凋亡率测定结果表明5个剂量龙葵碱诱导HepG2细胞凋亡率分别为6.0%、14.4%、17.3%、18.9%、32.2%,0.08μg/mL喜树碱诱导HepG2细胞的凋亡率为21.9%.细胞周期观察发现龙葵碱各组G2/M期均消失,S期明显升高.龙葵碱对HepG2人肝癌细胞株比较敏感,能够诱导HepG2细胞凋亡,并将HepG2细胞阻止在S期,影响肿瘤细胞DNA合成.

  20. Offering Global Collaboration Services beyond CERN and HEP

    Science.gov (United States)

    Fernandes, J.; Ferreira, P.; Baron, T.

    2015-12-01

    The CERN IT department has built over the years a performant and integrated ecosystem of collaboration tools, from videoconference and webcast services to event management software. These services have been designed and evolved in very close collaboration with the various communities surrounding the laboratory and have been massively adopted by CERN users. To cope with this very heavy usage, global infrastructures have been deployed which take full advantage of CERN's international and global nature. If these services and tools are instrumental in enabling the worldwide collaboration which generates major HEP breakthroughs, they would certainly also benefit other sectors of science in which globalization has already taken place. Some of these services are driven by commercial software (Vidyo or Wowza for example), some others have been developed internally and have already been made available to the world as Open Source Software in line with CERN's spirit and mission. Indico for example is now installed in 100+ institutes worldwide. But providing the software is often not enough and institutes, collaborations and project teams do not always possess the expertise, or human or material resources that are needed to set up and maintain such services. Regional and national institutions have to answer needs, which are growingly global and often contradict their operational capabilities or organizational mandate and so are looking at existing worldwide service offers such as CERN's. We believe that the accumulated experience obtained through the operation of a large scale worldwide collaboration service combined with CERN's global network and its recently- deployed Agile Infrastructure would allow the Organization to set up and operate collaborative services, such as Indico and Vidyo, at a much larger scale and on behalf of worldwide research and education institutions and thus answer these pressing demands while optimizing resources at a global level. Such services would

  1. Using DD4hep through Gaudi for new experiments and LHCb

    CERN Document Server

    Clemencic, M

    2015-01-01

    The LHCb Software Framework Gaudi is a C++ software framework for HEP applications used by several experiments.Although Gaudi is extremely flexible and extensible, its adoption is limited by the lack of certain components that are fundamental for the software framework of an experiment, in particular a detector description framework, whose implementation is delegated to the adopters.To enable future experiments to quickly adopt Gaudi, we integrated the DD4hep toolkit in the existing software framework, and, as a proof of concept, we used it with the LHCb software applications, from simulation to reconstruction and analysis.We will describe how the DD4hep toolkit can be used by a new experiment, as well as how we can migrate an existing detector description framework to the new toolkit.

  2. Qualidade de vida do doador após transplante hepático intervivos

    OpenAIRE

    Coelho, Júlio Cezar Uili; PAROLIN,Mônica Beatriz; Baretta,Giorgio Alfredo Pedroso; Pimentel, Silvania Klug; Alexandre Coutinho Teixeira de FREITAS; Colman, Daniel

    2005-01-01

    RACIONAL: A qualidade de vida do doador após transplante hepático intervivos ainda não foi avaliada em nosso meio. OBJETIVO: Avaliar a qualidade de vida do doador após transplante hepático intervivos. MÉTODOS: De um total de 300 transplantes hepáticos, 51 foram de doadores vivos. Doadores com seguimento menor do que 6 meses e os que não quiseram participar do estudo foram excluídos. Os doadores responderam a um questionário de 28 perguntas abordando os vários aspectos da doação, sendo também ...

  3. Targeting and molecular imaging of HepG2 cells using surface-functionalized gold nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Rathinaraj, Pierson [Auckland University of Technology, Institute of Biomedical Technologies (New Zealand); Lee, Kyubae; Choi, Yuri; Park, Soo-Young [Kyungpook National University, School of Applied Chemical Engineering, Graduate School (Korea, Republic of); Kwon, Oh Hyeong [Kumoh National Institute of Technology, Department of Polymer Science and Engineering (Korea, Republic of); Kang, Inn-Kyu, E-mail: ikkang@knu.ac.kr [Kyungpook National University, School of Applied Chemical Engineering, Graduate School (Korea, Republic of)

    2015-07-15

    Mercaptosuccinic acid (M)-conjugated gold nanoparticles (GM) were prepared and characterized by transmission electron microscope and dynamic light scattering. M was used to improve the monodispersity and non-specific intracellular uptake of nanoparticles. Lactobionic acid (L) was subsequently conjugated to the GM to target preferentially HepG2 cells (liver cancer cells) that express asialoglycoprotein receptors (ASGPR) on their membrane surfaces and facilitate the transit of nanoparticles across the cell membrane. The mean size of lactobionic acid-conjugated gold nanoparticle (GL) was approximately 10 ± 0.2 nm. Finally, the Atto 680 dye (A6) was coupled to the nanoparticles to visualize their internalization into HepG2 cells. The interaction of surface-modified gold nanoparticles with HepG2 cells was studied after culturing cells in media containing the GM or L-conjugated GM (GL)

  4. Estudio del estado bucodental del paciente trasplantado hepático

    OpenAIRE

    Díaz Ortiz, María Luisa; Micó Llorens, José María; Gargallo Albiol, Jordi; Baliellas Comellas, Carmen; Berini Aytés, Leonardo; Gay Escoda, Cosme

    2005-01-01

    Desde que se realizó en España el primer trasplante hepático en el año 1984 los avances en la técnica quirúrgica y en los fármacos inmunosupresores empleados han producido un aumento en el número de pacientes trasplantados. El objetivo del presente estudio fue valorar el estado bucodental de los pacientes trasplantados hepáticos. Se realizó un estudio descriptivo transversal de una muestra de pacientes que habían sido sometidos a un trasplante hepático en el Hospital Príncipes de España de la...

  5. Anticancer and apoptosis-inducing effects of Moringa concanensis using hepG2 cell lines

    Directory of Open Access Journals (Sweden)

    V. Balamurugan

    2014-12-01

    Full Text Available The objective of the present investigation is focused on the anticancer activity of the ethanolic crude extract of Moringa concanensis leaf and bark against HepG2 cell line. The study was facilitated by collecting the plant sample and subjected to ethanol crude extraction. The anticancer activity of the crude extracted sample against HepG2 cell line was examined by MTT assay. The study confirms that the leaf crude extract of M. concanensis has pronounced anticancer potential against HepG2 cell lines while compared to that of the bark extract. The plant investigated possesses remarkable anticancer activity and hence isolation of the compound contributing to the activity may lead to develop at a novel and natural phytomedicine for the disease.

  6. Running a typical ROOT HEP analysis on Hadoop MapReduce

    Science.gov (United States)

    Russo, S. A.; Pinamonti, M.; Cobal, M.

    2014-06-01

    We evaluate how a typical ROOT High Energy Physics (HEP) analysis can be executed on Hadoop MapReduce. We take into account several aspects and we propose a method to perform the analysis in a completely transparent way to ROOT, the data and the user: the goal is to let ROOT run without any modifications and to store the data in its original format. The solutions which has been found to solve the encountered problems can be easily ported to any HEP code, and in general to any code working on binary data relying on independent sub-problems like HEP particle collision events. We tested the method by running an analysis code for the top quark pair production cross section measurement with the ATLAS experiment at the Large Hadron Collider in the CERN laboratory.

  7. Efeito da taurina sobre a esteatose hepática induzida por tioacetamida em Danio rerio

    OpenAIRE

    Thais Ortiz Hammes

    2011-01-01

    Introdução: A doença hepática gordurosa não alcoólica é uma das formas mais comuns de doença hepática crônica no mundo ocidental. A taurina é um aminoácido que apresenta atividade antioxidante e, por isso, pode ser uma terapia promissora nessa hepatopatia. Objetivo: Avaliar o efeito da taurina na esteatose hepática induzida por tioacetamida em Danio rerio. Métodos: Os animais foram divididos em 4 grupos (n=288): controle (Ctrl - 20 μL de solução salina), taurina (TAU – 1000 mg/kg), tiaoacetam...

  8. Interacionismo Simbólico e Transplante Hepático

    OpenAIRE

    José Miguel Rasia

    2013-01-01

    Muitas são as possibilidades teórico-metodológicas oferecidas pela sociologia para a abordagem da medicina contemporânea e seu alto grau de complexidade. A escolha do interacionismo simbólico para a análise do transplante hepático deve-se ao fato de se abordar, neste artigo, questões que têm importância central para autores como Goffman e Strauss. As observações realizadas com e Equipe de Transplante Hepático com os indivíduos doentes hepáticos crônicos à espera para transplante e os transpla...

  9. [Biological function and molecular mechanism of URI in HepG2 cells].

    Science.gov (United States)

    Zhou, Wei; Zhong, Yanyu; Wang, Hongmin; Yang, Sijun; Wei, Wenxiang

    2014-11-01

    To explore the effect and molecular mechanism of the unconventional prefoldin RPB5 interactor (URI) in hepatocellular carcinoma HepG2 cells. The cDNA sequence and shRNA of URI were obtained and sub-cloned into eukaryotic expression vectors. Then those vectors were transfected into HepG2 cells to obtain stable transfection cell line. The cell proliferation and anchor-independent growth in URI-overexpressing and knockdown HepG2 cells were determined by CCK-8 and soft agar colony assay. Flow cytometry was applied to detect the cell cycle and apoptosis of γ-ray irradiated cells. Apoptosis related genes were detected by Western blot. The pCDNA3.1-URI and pGPU6-URIi eukaryotic expression vectors were constructed successfully and corresponding stable transfection cell lines were obtained. Cell proliferation rates of the HepG2, pCDNA3.1-URI-HepG2 and pGPU6-URIi-HepG2 cells were (588.78 ± 32.12)%, (959.33 ± 58.8)% and (393.93 ± 39.7)%, respectively (P HepG2, pCDNA3.1-URI-HepG2 and pGPU6-URIi-HepG2 cells were 43 ± 7, 85 ± 5 and 20 ± 4 (P HepG2 cells, the relative protein expression levels of URI, Bax and Bcl-2 were 0.92 ± 0.03, 1.11 ± 0.13 and 0.82 ± 0.01 (P HepG2 cells, the relative protein expression levels of URI, Bax and Bcl-2 were 1.79 ± 0.12, 0.48 ± 0.01 and 2.20 ± 0.30 (P HepG2 cells, the relative protein expression levels of URI, Bax and Bcl-2 were 0.50 ± 0.04, 1.52 ± 0.20 and 0.38 ± 0.01 (P < 0.05), respectively. The expression of Bax was down-regulated and Bcl-2 was up-regulated in the URI-overexpressing cell line. However, on the contrary, expression of Bax was up-regulated and Bcl-2 was down-regulated in the URI-depleted cell line. URI may promote the growth of hepatocellular carcinoma cells via inhibition of cell proliferation and reducing the apoptosis in hepatocellular carcinoma cells in vitro. After the impairment of URI expression, the proliferation ability of hepatocellular carcinoma cells is suppressed and the ability to resist

  10. 吡非尼酮对肝癌HepG2细胞增殖和凋亡的影响%Effect of Pirfenidone on Proliferation and Apoptosis of Human Hepatocellu-lar Carcinoma HepG2 Cells

    Institute of Scientific and Technical Information of China (English)

    韩枫; 凌心

    2015-01-01

    Objective: To investigate the effect of pirfenidone (PF) on cell proliferation and apoptosis of HepG2 cells in vitro. Methods: The cell proliferation inhibition of HepG2 cells by PF was observed by CCK-8 assay. The morphology of HepG2 cells with Hoechst 33258 staining was observed under a fluores-cent microscope. The apoptosis was analyzed by flow cytometry. Results: PF obviously inhibited the prolif-eration of HepG2 cells in a time and dose dependent manner. Hoechst 33258 staining showed apoptosis was induced after PF treatment. Flow cytometry results showed that PF could induce HepG2 cells apopto-sis, compared with the control group (P<0.01). Conclusion: PF inhibits the proliferation of HepG2 cells probably because of inducing HepG2 cells apoptosis.%目的:研究吡非尼酮(pirfenidone,PF)对人肝癌细胞系HepG2增殖和凋亡的影响。方法:CCK-8法测定不同浓度PF对HepG2细胞增殖活性的影响;Hoechst 33258荧光染色法观察PF处理后HepG2细胞形态的变化;流式细胞仪检测细胞凋亡率。结果:PF对HepG2细胞具有显著增殖抑制作用,并呈浓度和时间依赖性;Hoechst 33258染色可见PF处理后细胞出现典型的凋亡形态学变化;流式细胞仪检测结果显示,与空白组比较,PF处理后的HepG2细胞凋亡率显著增加(P﹤0.01)。结论:PF对人肝癌细胞系HepG2细胞增殖具有抑制作用,且与诱导HepG2细胞凋亡有关。

  11. HepG2 cells recovered from apoptosis show altered drug responses and invasiveness

    Institute of Scientific and Technical Information of China (English)

    Shan-Shan Wang; Xin Xie; Chung Sing Timothy Wong

    2014-01-01

    BACKGROUND: Cancer  relapse,  associated  with  increased drug resistance and rate of metastasis, often follows completion of chemotherapy but the cancer escape mechanisms are still incompletely understood. Percutaneous ethanol injection (PEI) has been used for treating hepatocellular carcinoma (HCC) for decades, while the recurrence after PEI treatment remains a major limitation. Recent evidence mounted that cancer cells could survive from chemical induced apoptosis, suggesting a potential route through which cancer relapse may occur. This study focuses on the consequence of HepG2 recovery from ethanol-induced apoptotic event. METHODS: The  model  of  HepG2  recovery  from  ethanol-induced apoptotic event was established by live cell imaging, BrdU assay and Western blotting. MTT assay, wound healing assay and invasion assay were used to investigate the behavior of HepG2 after recovery. RESULTS: HepG2 cells could recover from ethanol-induced apoptosis. These cells changed their behaviors such as drug resistance, mobility and invasiveness. On average, the recovered HepG2 cell clones were found to be 46% more resistant to ethanol and 84% higher in mobility. The recovered clones became 58.2% more sensitive to 5-lfuorouracil. CONCLUSIONS: HepG2  cells  can  recover  from  ethanol-induced apoptotic event. These cells became more resistant to ethanol and more invasive. Although the recovered cell clones were more resistant to ethanol, they became more sensitive to 5-lfuorouracil treatment.

  12. Habitat Evaluation Procedures (HEP) Report Wanaket Wildlife Area, Techical Report 2005-2006.

    Energy Technology Data Exchange (ETDEWEB)

    Ashley, Paul

    2006-02-01

    The Regional HEP Team (RHT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR) Wildlife Program staff conducted a follow-up habitat evaluation procedures (HEP) analysis on the Wanaket Wildlife Management Area in June 2005. The 2005 HEP investigation generated 3,084.48 habitat units (HUs) for a net increase of 752.18 HUs above 1990/1995 baseline survey results. The HU to acre ratio also increased from 0.84:1.0 to 1.16:1.0. The largest increase in habitat units occurred in the shrubsteppe/grassland cover type (California quail and western meadowlark models), which increased from 1,544 HUs to 2,777 HUs (+43%), while agriculture cover type HUs were eliminated because agricultural lands (managed pasture) were converted to shrubsteppe/grassland. In addition to the agriculture cover type, major changes in habitat structure occurred in the shrubsteppe/grassland cover type due to the 2001 wildfire which removed the shrub component from well over 95% of its former range. The number of acres of all other cover types remained relatively stable; however, habitat quality improved in the riparian herb and riparian shrub cover types. The number and type of HEP species models used during the 2005 HEP analysis were identical to those used in the 1990/1995 baseline HEP surveys. The number of species models employed to evaluate the shrubsteppe/grassland, sand/gravel/mud/cobble, and riparian herb cover types, however, were fewer than reported in the McNary Dam Loss Assessment (Rassmussen and Wright 1989) for the same cover types.

  13. HepG2、Hep3B细胞中肿瘤干细胞相关标志分子的表达%Expression of cancer stem cell-associated markers in liver cancer cell lines HepG2 and Hep3B

    Institute of Scientific and Technical Information of China (English)

    贾茜; 高建; 张小丽; 向颖; 邓涛

    2012-01-01

    Objective To explore the expression of cancer stem cell ( CSC) -associated markers CD90, CD133, octamer4 (Oct4) and ATP-binding cassette transporter G2 (ABCG2) in liver cancer cell lines HepG2 and Hep3B, and to preliminarily analyze the significance. Methods Liver CSCs were separated from the HepG2 and Hep3B cell lines by flow cytometry, and were cultured in serum-free medium to form spheres. The liver cancer cells were assigned as a control group. Cell proliferation capacity was examined by single-cell clone formation assay. Cell viability was detected by MTT assay after treated with doxorubicin. The mRNA and protein expression levels of CD90, CD133, Oct4 and ABCG2 were detected by real-time PCR and Western blotting , respectively. Results The single cell proliferation capacity of the liver CSCs was stronger than that of the liver cancer cells. The single-cell clone formation assay showed that the colony formation rate of the Hep3B cells was lower than that of the Hep3B CSCs after cultured for 14 d [8/27 (30% ) vs 12/23 (52% ) , P <0. 05 ] , and the colony formation rate of the HepG2 cells was also lower than that of the HepG2 CSCs [7/38 (18% ) vs 9/26 (35%), P <0. 05]. MTT assay showed that the cell viability significantly increased in the liver CSCs compared with that in the liver cancer cells after treated with doxorubicin for 48 h [ HepG2 cells (38. 17 ± 6. 92)% vs HepG2 CSCs (69. 88 ±5. 43)% , P <0. 05; Hep3B cells (50. 16 ±4. 89)% vs Hep3B CSCs (78.53 ± 7. 86 ) % , P < 0. 05 ]. The Real-time PCR results showed that the mRNA expression levels of CD90, CD133, Oct4 and ABCG2 were significantly increased in the liver CSCs compared with those in the parental cells (P < 0. 05 ) . Western blotting results showed that the protein expression levels of Oct4 and ABCG2 significantly increased in the liver CSCs compared with those in the parental cells ( P < 0. 05 ) . Conclusion The CSC-associated markers CD90, CD133, Oct4 and ABCG2 are highly expressed in liver CSCs

  14. Adenovirus vector expressing mda-7 selectively kills hepatocellular carcinoma cell line Hep3B

    Institute of Scientific and Technical Information of China (English)

    Xin-Bo Xue; Kun Chen; Cong-Jun Wang; Jian-Wei Zheng; Yuan Yu; Zhi-Hai Peng; Zai-De Wu

    2008-01-01

    BACKGROUND: Melanoma differentiation associated gene-7 (mda-7) is a novel tumor suppressor gene, which has suppressor activity in a broad spectrum of human cancer cells both in vitro and in vivo through activation of various intracellular signaling pathways. In this study, we investigated the potential effect of mda-7 on human hepatocellular carcinoma (HCC) in vitro. METHODS: Cells from the human HCC cell line Hep3B and the human liver cell line L-02 were assigned to three groups. One was cultured in Dulbecco's modiifed Eagle's medium without serum (control). The others were transfected with adenovirus expressing the mda-7 gene (Ad.mda-7) or adenovirus vector serving as negative control (Ad.vec). The expression of MDA-7 and Bcl-2 proteins in Hep3B and L-02 cells was conifrmed by the reverse transcriptase-polymerase chain reaction and enzyme-linked immunosorbent assay. The methyl thiazolyl tetrazolium colorimetric assay and lfow cytometry were used to assess tumor cell proliferation and the cell cycle. Hoechst and Annexin-V/propidium iodide staining were used to study mda-7 gene expression in Hep3B and L-02 cells. The expression of MDA-7, Bcl-2 and Bax proteins were detected by Western blotting. RESULTS: The mda-7 gene was expressed in Hep3B and L-02 cells. The protein concentrations of MDA-7 in supernatants were 790 and 810 pg/ml, respectively. mda-7 induced Hep3B growth suppression and apoptosis, compared with Ad.mda-7 and control (P CONCLUSIONS: mda-7 selectively induces growth inhibi-tion and apoptosis in the HCC cell line Hep3B but not in the normal liver cell line L-02 via downregulating the anti-apoptosis protein Bcl-2. It could be an ideal gene for gene therapy in HCC.

  15. [Effects of membrane protein ANO1 stable overexpression on laryngocarcinoma Hep-2 cells].

    Science.gov (United States)

    Li, Ya-dong

    2014-02-01

    To explore the effects of ANO1 overexpression on the proliferation, detachment, spreading, and migration of laryngocarcinoma Hep-2 cell line. ANO1-overexpressing Hep-2 cell line was selected as the assay group, and Hep-2 cell line with empty plasmid was selected as the control group. MTT assay was used to detect the proliferation abilities of Hep-2 cells in both two groups. Cell detachment assay and spreading assay were used to detect the detachment and spreading abilities of Hep-2 cells. Boyden chamber invasion assay, wound healing assay in vitro, and niflumic acid block chloride channel were used to detect the migration abilities of Hep-2 cells. All data were analyzed by SPSS 10.0 software package. Cell proliferation assay by MTT showed that, compared with the control group, the optical density value of assay group was not significantly different (P=0.62). The results of cell detachment assay and cell spreading assay showed the cell detachment rates and cell spreading rates in assay group were significantly higher than those in control group (P<0.0001). The results of Boyden chamber invasion assay showed the percentages of cells migrating through the membrane in assay group were significantly higher than those in control group (P<0.0001). The results of in vitro wound healing experiments showed the wound area rate in assay group was significantly lower than that in control group (P<0.0001). The results of niflumic acid blocking chloride channel experiments showed the wound area rates in assay group were significantly higher than those in control group (P<0.0001). ANO1 overexpression does not remarkably alter the proliferation rate of cancer cells, but increases the migration, spreading, and detachment capacities of head and neck squamous cell carcinoma.

  16. [Bovine lactoferrin decreases the invasion of Salmonella enterica to HEp-2 cells].

    Science.gov (United States)

    Barreto Arce, Liz J; Contreras García, Carmen A; Durand Vara, David; Ochoa Woodell, Theresa

    2016-01-01

    To assess the effect of bovine lactoferrin (bLf) on the invasion of Salmonella enterica ser. Typhimurium to HEp-2 cells. HEp-2 monolayers were infected with 106 colony forming unit (CFU) of bacteria in the absence and presence of 1 and 10 mg/mL of bLf (iron-saturated) and incubated 1.5 hours at 37°C. Two treatments were evaluated: pre- infection (HEp-2 cells were incubated with bLf one hour prior to infection with Salmonella) and post-infection (bLf was added 15 minutes after the infection). Invasiveness of Salmonella was determined throgh quantification of CFU recovered from inside the HEp-2 cells (after treatment with 100 μg/mL and 10 μg/mL of gentamicin and Triton X -100). In the pre-infection treatment, we observed a decrease of 23% of Salmonella invasion when HEp-2 cells were pre incubated with 1 mg/mL of bLf (2.8x105 vs 2.1x105, p=0.04) and 50% when them were pre-incubated with 10 mg/mL of bLf (2.8x105 vs 1.4x105, p=0.04). In post-infection treatment, no changes were observed in the invasiveness of Salmonella. The results indicated that bLf reduces the invasiveness of Salmonella enterica ser. Typhimurium to HEp-2 cells in the pre-infection treatment.

  17. Comparative analysis of 3D culture methods on human HepG2 cells.

    Science.gov (United States)

    Luckert, Claudia; Schulz, Christina; Lehmann, Nadja; Thomas, Maria; Hofmann, Ute; Hammad, Seddik; Hengstler, Jan G; Braeuning, Albert; Lampen, Alfonso; Hessel, Stefanie

    2017-01-01

    Human primary hepatocytes represent a gold standard in in vitro liver research. Due to their low availability and high costs alternative liver cell models with comparable morphological and biochemical characteristics have come into focus. The human hepatocarcinoma cell line HepG2 is often used as a liver model for toxicity studies. However, under two-dimensional (2D) cultivation conditions the expression of xenobiotic-metabolizing enzymes and typical liver markers such as albumin is very low. Cultivation for 21 days in a three-dimensional (3D) Matrigel culture system has been reported to strongly increase the metabolic competence of HepG2 cells. In our present study we further compared HepG2 cell cultivation in three different 3D systems: collagen, Matrigel and Alvetex culture. Cell morphology, albumin secretion, cytochrome P450 monooxygenase enzyme activities, as well as gene expression of xenobiotic-metabolizing and liver-specific enzymes were analyzed after 3, 7, 14, and 21 days of cultivation. Our results show that the previously reported increase of metabolic competence of HepG2 cells is not primarily the result of 3D culture but a consequence of the duration of cultivation. HepG2 cells grown for 21 days in 2D monolayer exhibit comparable biochemical characteristics, CYP activities and gene expression patterns as all 3D culture systems used in our study. However, CYP activities did not reach the level of HepaRG cells. In conclusion, the increase of metabolic competence of the hepatocarcinoma cell line HepG2 is not due to 3D cultivation but rather a result of prolonged cultivation time.

  18. Butyrylcholinesterase expression is regulated by fatty acids in HepG2 cells.

    Science.gov (United States)

    Gok, Muslum; Zeybek, N Dilara; Bodur, Ebru

    2016-11-25

    Butyrylcholinesterase (BChE) is mostly associated with the detoxification of xenobiotics. In this study to analyze the involvement of BChE in lipid metabolism, linoleic acid (LA) and α-linolenic acid (ALA) were applied to HepG2 cells along with expression of wild type human BChE. After 48 h of these treatments WST-1 cell proliferation assay, FACS analysis, RT-PCR, Oil Red O staining and activity assays were performed. Application of high concentrations of LA to HepG2 cells without BChE transfection lead to detachment of the cells. The IC50 value LA was found as 149.3 μM whereas the IC50 value for ALA could not be calculated. Hence, in order to display minimal effects on cell viability, 5 μM was chosen as appropriate concentration for LA and ALA application to HepG2 cells. Transfection of wild-type BChE plasmid to HepG2 cells yielded increased BChE expression. Application of 5 μM ALA after BChE transfection to HepG2 cells resulted in increased expression of BChE. Although with this low concentration the number of apoptotic cells was decreased with ALA treatments, LA application did not cause a similar result with the same dose. Moreover ghost cell like property was observed in LA-treated cells. Application of ALA, on the other hand, led to an overall increase in cell numbers, BChE expression and activity. Our results indicate that BChE expression might be regulated by ALA in HepG2 cells. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  19. Selective Cytotoxicity of Goniothalamin against Hepatoblastoma HepG2 Cells

    Directory of Open Access Journals (Sweden)

    Noorjahan B. Alitheen

    2011-04-01

    Full Text Available Liver cancer has become one of the major types of cancer with high mortality and liver cancer is not responsive to the current cytotoxic agents used in chemotherapy. The purpose of this study was to examine the in vitro cytotoxicity of goniothalamin on human hepatoblastoma HepG2 cells and normal liver Chang cells. The cytotoxicity of goniothalamin against HepG2 and liver Chang cell was tested using MTT cell viability assay, LDH leakage assay, cell cycle flow cytometry PI analysis, BrdU proliferation ELISA assay and trypan blue dye exclusion assay. Goniothalamin selectively inhibited HepG2 cells [IC50 = 4.6 (±0.23 µM in the MTT assay; IC50 = 5.20 (±0.01 µM for LDH assay at 72 hours], with less sensitivity in Chang cells [IC50 = 35.0 (±0.09 µM for MTT assay; IC50 = 32.5 (±0.04 µM for LDH assay at 72 hours]. In the trypan blue dye exclusion assay, the Viability Indexes were 52 ± 1.73% for HepG2 cells and 62 ± 4.36% for Chang cells at IC50 after 72 hours. Cytotoxicity of goniothalamin was related to inhibition of DNA synthesis, as revealed by the reduction of BrdU incorporation. At 72 hours, the lowest concentration of goniothalamin (2.3 µL retained 97.6% of normal liver Chang cells proliferation while it reduced HepG2 cell proliferation to 19.8% as compared to control. Besides, goniothalamin caused accumulation of hypodiploid apoptosis and different degree of G2/M arrested as shown in cell cycle analysis by flow cytometry. Goniothalamin selectively killed liver cancer cell through suppression of proliferation and induction of apoptosis. These results suggest that goniothalamin shows potential cytotoxicity against hepatoblastoma HepG2 cells.

  20. Planning And Allocation of Tasks in a Multiprocessor System as a Multi-Objective Problem and its Resolution Using Evolutionary Programming

    Directory of Open Access Journals (Sweden)

    Apolinar Velarde Martinez

    2016-03-01

    Full Text Available the use of Linux-based clusters is a strategy for the development of multiprocessor systems. These types of systems face the problem of efficiently executing the planning and allocation of tasks, for the efficient use of its resources. This paper addresses this as a multi-objective problem, carrying out an analysis of the objectives that are opposed during the planning of the tasks, which are waiting in the queue, before assigning tasks to processors. For this, we propose a method that avoids strategies such as those that use genetic operators, exhaustive searches of contiguous free processors on the target system, and the use of the strict allocation policy: First Come First Serve (FIFO. Instead, we use estimation and simulation of the joint probability distribution as a mechanism of evolution, for obtaining assignments of a set of tasks, which are selected from the waiting queue through the planning policy Random-Order-of-Service (ROS. A set of conducted experiments that compare the results of the FIFO allocation policy, with the results of the proposed method show better results in the criteria of: utilization, throughput, mean turnaround time, waiting time and the total execution time, when system loads are significantly increased.

  1. Langston University - High Energy Physics (LU-HEP)

    Energy Technology Data Exchange (ETDEWEB)

    Snow, Dr., Joel [Langston Univ., OK (United States)

    2012-08-13

    PI served as MC production coordinator MC production increased very significantly. In the first year of the PI's tenure as production coordinator production was 159M events and 6.7~TB of data. During the last year of the project period production was 2,342~M events and 262~TB of data. That is a factor of 15 increase in events and 39 in data volume. The increase occurred with improvements in computer hardware and networks, through the use of grid technology on diverse resources, and through increased automation and efficiency of the production process. LU HEP developed and deployed the automatic MC request processing system in use at FNAL. The complementary strategies of automation and grid production served DZero well. Fermilab has recognized LU HEP's contribution to DZero by allowing the PI to devote full time to research activities by appointing him a guest scientist for the last six years of the project period.

  2. Esteatosis hepática y resistencia a la insulina: ¿qué ocurre primero?

    National Research Council Canada - National Science Library

    Esteve-Lafuente, E; Ricart-Engel, W

    2006-01-01

    ... de la lipólisis del tejido adiposo, lo cual libera una gran cantidad de ácidos grasos libres (AGL) que se acumulan en el hígado y generan la esteatosis hepática. El acúmulo de AGL interfiere a su vez en la resistencia hepática a la insulina y genera alteraciones en el metabolismo de la glucosa. En parte de los sujetos con esteatosis, el exceso de AGL, sumado a un aumento de las citocinas proinflamatorias y un descenso de las antiinflamatorias, genera estrés oxidativo. El resultado del aumento del estr...

  3. High permissivity of human HepG2 hepatoma cells for influenza viruses.

    Science.gov (United States)

    Ollier, Laurence; Caramella, Anne; Giordanengo, Valérie; Lefebvre, Jean-Claude

    2004-12-01

    Human HepG2 hepatoma cells are highly permissive for influenza virus type A and type B, even without the addition of trypsin, and they exhibit a marked cytopathic effect. This property greatly facilitates the primary isolation of influenza viruses. Virus replication was significantly reduced by the plasmin(ogen)-specific inhibitor tranexamic acid, and this suggests a potential role played by the plasminogen/tissue plasminogen activator complex at the surface of HepG2 cells. This might represent a new approach for study of the interrelations of this complex with influenza viruses.

  4. Diagnóstico y tratamiento de la Encefalopatía Hepática

    OpenAIRE

    Sánchez Juan Carlos; Castro Kenia Vanesa; Castellón Jimenez Jaime

    2013-01-01

    La encefalopatía hepática es un síndrome neuropsiquiátrico complejo que se observa con gran frecuencia en el paciente con cirrosis hepática crónica. El aspecto fundamental en su fisiopatología es el acceso de sangre delterritorio portal a la circulación sistémica. Esto causa la exposición del cerebro a concentraciones elevadas de sustancias tóxicas, principalmente el amonio, que provocan alteraciones en los astrocitos y defectos en la neurotransmisión.El diagnóstico se establece al demostrar ...

  5. Probióticos en las enfermedades hepáticas

    OpenAIRE

    Germán Soriano; Elisabet Sánchez; Carlos Guarner

    2013-01-01

    En las enfermedades hepáticas, especialmente en la cirrosis y la esteatohepatitis no alcohólica, las alteraciones en la microbiota intestinal y en los mecanismos de respuesta inflamatoria desempeñan un papel importante en la progresión de la enfermedad y el desarrollo de complicaciones. Los probióticos, debido a su capacidad para modular la flora intestinal, la permeabilidad intestinal y la respuesta inmunológica, pueden ser eficaces en el tratamiento de las enfermedades hepáticas y en la pre...

  6. ATLAS Experience with HEP Software at the Argonne Leadership Computing Facility

    CERN Document Server

    LeCompte, T; The ATLAS collaboration; Benjamin, D

    2014-01-01

    A number of HEP software packages used by the ATLAS experiment, including GEANT4, ROOT and ALPGEN, have been adapted to run on the IBM Blue Gene supercomputers at the Argonne Leadership Computing Facility. These computers use a non-x86 architecture and have a considerably less rich operating environment than in common use in HEP, but also represent a computing capacity an order of magnitude beyond what ATLAS is presently using via the LCG. The status and potential for making use of leadership-class computing, including the status of integration with the ATLAS production system, is discussed.

  7. Probióticos en las enfermedades hepáticas

    OpenAIRE

    Germán Soriano; Elisabet Sánchez; Carlos Guarner

    2013-01-01

    En las enfermedades hepáticas, especialmente en la cirrosis y la esteatohepatitis no alcohólica, las alteraciones en la microbiota intestinal y en los mecanismos de respuesta inflamatoria desempeñan un papel importante en la progresión de la enfermedad y el desarrollo de complicaciones. Los probióticos, debido a su capacidad para modular la flora intestinal, la permeabilidad intestinal y la respuesta inmunológica, pueden ser eficaces en el tratamiento de las enfermedades hepáticas y en la pre...

  8. Demonstration of the presence of the "deleted" MIR122 gene in HepG2 cells.

    Science.gov (United States)

    Hamad, Ibrahim A Y; Fei, Yue; Kalea, Anastasia Z; Yin, Dan; Smith, Andrew J P; Palmen, Jutta; Humphries, Steve E; Talmud, Philippa J; Walker, Ann P

    2015-01-01

    MicroRNA 122 (miR-122) is highly expressed in the liver where it influences diverse biological processes and pathways, including hepatitis C virus replication and metabolism of iron and cholesterol. It is processed from a long non-coding primary transcript (~7.5 kb) and the gene has two evolutionarily-conserved regions containing the pri-mir-122 promoter and pre-mir-122 hairpin region. Several groups reported that the widely-used hepatocytic cell line HepG2 had deficient expression of miR-122, previously ascribed to deletion of the pre-mir-122 stem-loop region. We aimed to characterise this deletion by direct sequencing of 6078 bp containing the pri-mir-122 promoter and pre-mir-122 stem-loop region in HepG2 and Huh-7, a control hepatocytic cell line reported to express miR-122, supported by sequence analysis of cloned genomic DNA. In contrast to previous findings, the entire sequence was present in both cell lines. Ten SNPs were heterozygous in HepG2 indicating that DNA was present in two copies. Three validation isolates of HepG2 were sequenced, showing identical genotype to the original in two, whereas the third was different. Investigation of promoter chromatin status by FAIRE showed that Huh-7 cells had 6.2 ± 0.19- and 2.7 ± 0.01- fold more accessible chromatin at the proximal (HNF4α-binding) and distal DR1 transcription factor sites, compared to HepG2 cells (p=0.03 and 0.001, respectively). This was substantiated by ENCODE genome annotations, which showed a DNAse I hypersensitive site in the pri-mir-122 promoter in Huh-7 that was absent in HepG2 cells. While the origin of the reported deletion is unclear, cell lines should be obtained from a reputable source and used at low passage number to avoid discrepant results. Deficiency of miR-122 expression in HepG2 cells may be related to a relative deficiency of accessible promoter chromatin in HepG2 versus Huh-7 cells.

  9. Synthesis of apoptotic chalcone analogues in HepG2 human hepatocellular carcinoma cells.

    Science.gov (United States)

    Park, Cheon-Soo; Ahn, Yongchel; Lee, Dahae; Moon, Sung Won; Kim, Ki Hyun; Yamabe, Noriko; Hwang, Gwi Seo; Jang, Hyuk Jai; Lee, Heesu; Kang, Ki Sung; Lee, Jae Wook

    2015-12-15

    Eight chalcone analogues were prepared and evaluated for their cytotoxic effects in human hepatoma HepG2 cells. Compound 5 had a potent cytotoxic effect. The percentage of apoptotic cells was significantly higher in compound 5-treated cells than in control cells. Exposure to compound 5 for 24h induced cleavage of caspase-8 and -3, and poly (ADP-ribose) polymerase (PARP). Our findings suggest that compound 5 is the active chalcone analogue that contributes to cell death in HepG2 cells via the extrinsic apoptotic pathway.

  10. Diagnóstico y tratamiento de la Encefalopatía Hepática

    OpenAIRE

    Sánchez Juan Carlos; Castro Kenia Vanesa; Castellón Jimenez Jaime

    2013-01-01

    La encefalopatía hepática es un síndrome neuropsiquiátrico complejo que se observa con gran frecuencia en el paciente con cirrosis hepática crónica. El aspecto fundamental en su fisiopatología es el acceso de sangre delterritorio portal a la circulación sistémica. Esto causa la exposición del cerebro a concentraciones elevadas de sustancias tóxicas, principalmente el amonio, que provocan alteraciones en los astrocitos y defectos en la neurotransmisión.El diagnóstico se establece al demostrar ...

  11. Benefits of diverse and interdisciplinary co-creation for HEP - a showcase

    CERN Document Server

    Castro, Cristina Bahamonde; Dopke, Jens; Kagan, Michael; Kaufmann, Sylvain; Knaepper, Ines; Kurikka, Joona; Milano, Leonardo; Muranaka, Tomoko; Pascu, Iulia; Potamianos, Karolos; Schweiger, Hansdieter; Utriainen, Tuuli; Perez Codina, Estel; Dobos, Daniel

    2016-01-01

    THE Port association organises interdisciplinary co-creational humanitarian hackathons at CERN. Combining physicists and engineers working on HEP related topics in their day job with entrepreneurs, artists, researchers, designers, humanitarian workers and other creative minds helps identifying similar material and engineering solutions for humanitarian challenges. It allow cross collaboration between many different disciplines. Concentrating on humanitarian and social benefitting topics the technology opportunities identify new methods, materials and processes, that can be feed back into HEP. The methodology of humanitarian hackathons is described and some examples of challenge outcomes are showcased.

  12. Overview of Student Characteristics and Program Outcomes. HEP/CAMP National Evaluation Project. Research Report No. 2.

    Science.gov (United States)

    Riley, Gary L.; And Others

    This research report is a detailed summary of student backgrounds, family characteristics, and educational and career outcomes of the respondents in the 1984-85 High School Equivalency Programs (HEP) and College Assistance for Migrants Programs (CAMP) National Evaluation Project. The report indicates that approximately half the HEP/CAMP…

  13. Loss of Hep Par 1 immunoreactivity in the livers of patients with carbamoyl phosphate synthetase 1 deficiency.

    Science.gov (United States)

    Yamaguchi, Maki; Kataoka, Tatsuki R; Shibayama, Takahiro; Fukuda, Akinari; Nakazawa, Atsuko; Minamiguchi, Sachiko; Sakurai, Takaki; Miyagawa-Hayashino, Aya; Yorifuji, Toru; Kasahara, Mureo; Uemoto, Shinji; Haga, Hironori

    2016-06-01

    The hepatocyte paraffin 1 (Hep Par 1) antibody is widely used as a hepatocyte marker, recognizing carbamoyl phosphate synthetase 1 (CPS1), an essential component of the urea cycle. Various missense, nonsense, and frameshift mutations occur in the CPS1 gene. In neonatal patients with homozygous CPS1 deficiency (CPS1D), urea cycle defects with resulting severe hyperammonemia can be fatal, though liver transplantation provides a complete cure for CPS1D. We performed Hep Par 1 immunostaining in the explanted livers of 10 liver transplant patients with CPS1D. Seven were negative for Hep Par 1 in the hepatocytes and the other three showed normal diffuse granular cytoplasmic staining. As expected, all three Hep Par 1-positive patients had at least one missense mutation, and all four patients who had only nonsense or frameshift mutations were Hep Par 1-negative. The other three patients were unexpectedly negative for Hep Par 1, even though each had one missense mutation. These results suggest that CPS1D can be related to the loss of Hep Par 1 reactivity due to the loss of protein production, a one amino acid substitution resulting in an abortive protein product, or both. Hep Par 1 immunohistochemistry can be used as a simple method to confirm CPS1D. © 2016 The Authors Pathology International published by Japanese Society of Pathology and John Wiley & Sons Australia, Ltd.

  14. Differential genomic effects of six different TiO2 nanomaterials on human liver HepG2 cells

    Science.gov (United States)

    Engineered nanoparticles are reported to cause liver toxicity in vivo. To better assess the mechanism of the in vivo liver toxicity, we used the human hepatocarcinoma cells (HepG2) as a model system. Human HepG2 cells were exposed to 6 TiO2 nanomaterials (with dry primary partic...

  15. Esterification of Ginsenoside Rh2 Enhanced Its Cellular Uptake and Antitumor Activity in Human HepG2 Cells.

    Science.gov (United States)

    Chen, Fang; Deng, Ze-Yuan; Zhang, Bing; Xiong, Zeng-Xing; Zheng, Shi-Lian; Tan, Chao-Li; Hu, Jiang-Ning

    2016-01-13

    Our previous research had indicated that the octyl ester derivative of ginsenoside Rh2 (Rh2-O) might have a higher bioavailability than Rh2 in the Caco-2 cell line. The aim of this study was to investigate the cellular uptake and antitumor effects of Rh2-O in human HepG2 cells as well as its underlying mechanism compared with Rh2. Results showed that Rh2-O exhibited a higher cellular uptake (63.24%) than Rh2 (36.76%) when incubated with HepG2 cells for 24 h. Rh2-O possessed a dose- and time-dependent inhibitory effect against the proliferation of HepG2 cells. The IC50 value of Rh2-O for inhibition of HepG2 cell proliferation was 20.15 μM, which was roughly half the value of Rh2. Rh2-O induced apoptosis of HepG2 cells through a mitochondrial-mediated intrinsic pathway. In addition, the accumulation of ROS was detected in Rh2-O-treated HepG2 cells, which participated in the apoptosis of HepG2 cells. Conclusively, the findings above all suggested that Rh2-O as well as Rh2 inducing HepG2 cells apoptosis might involve similar mechanisms; however, Rh2-O had better antitumor activities than Rh2, probably due to its higher cellular uptake.

  16. 水杨酸对人肝癌HepG2细胞体外生长的影响的研究*%Influence of Salicylic Acid on Human Hepatic Cancer HepG2 Cells Growth In-vitro

    Institute of Scientific and Technical Information of China (English)

    林冰; 郎锦义; 雷晴

    2014-01-01

    Objective: Salicylic acid ( SA) and its derivatives have been shown to induce apoptosis in a variety of cancer cells. The aim of this study is to investigate influence of SA on human hepatic cancer HepG2 cells growth in-vitro. Methods:MTT assay was used to determine the effect of SA on viability of HepG2 cells, EdU assay was used to detect the impact of SA on the proliferation activity of HepG2 cells, and the cell cycle progress altered and apoptosis of HepG2 cells induced by SA were determined using flow cytometry ( FCM) . Results:SA reduced significantly viability of hepatic cancer HepG2 cells in a concentration-dependent manner and had an IC50 value of (8. 92 ± 0. 45)mmol/L;EdU assay showed that the red fluorescence produced by incorporation of EdU decreased in HepG2 cells treated with SA for 24hr, thereby depress-ing the proliferation activity of HepG2 cells;FCM assay showed that compared to control, SA induced obviously cell cycle G0/G1-phase arrest ( 65. 5% ± 1. 21% vs. 34. 3% ± 0. 89%, P <0. 05 ) and delayed in entering S phase 24. 2% ± 0. 89% vs. 44. 0% ± 0. 64%, P<0. 05), and promoted apoptosis in HepG2 cells(24. 9% ± 0. 32% vs. 2. 3% ± 0. 11%, P<0. 05). Conclusion:SA would inhibits the growth of HepG2 cells by altering cell cycle progress, depressing prolifera-tion activity and promoting cell apoptosis.%目的:探讨水杨酸( salicylic acid, SA)对人肝癌HepG2细胞体外生长的影响。方法:利用MTT法测定SA对HepG2细胞存活性的作用;利用EdU法检测SA对HepG2细胞增殖活性的影响;利用流式细胞分析法测定SA诱导的HepG2细胞周期进程和凋亡。结果:SA显著且呈浓度依赖的降低人肝癌HepG2细胞的存活率,其半数抑制浓度(IC50)为(8.92±0.45)mmol/L;EdU分析显示,SA作用24hr,EdU掺入的红色荧光强度明显减弱,降低了HepG2细胞的增殖活性;FCM分析显示,与对照比较,SA诱导HepG2细胞周期阻滞于G0/G1期(65.5%±1.21%vs.34.3%±0.89%, P<0.05

  17. [Impacts of hypoxia on the features and chemoresistance of cancer stem cells in Hep-2 cells and underlying mechanism].

    Science.gov (United States)

    Qu, Yong-tao; Li, Xiao-ming; Xu, Ou; Wang, Mao-xin; Lu, Xiu-ying

    2012-03-01

    To investigate the effects of hypoxia on the features and chemoresistance of cancer stem cells in Hep-2 cells and underlying mechanism. The shRNA interference recombinant plasmid targeting HIF-1α was synthesized and transfected into Hep-2 cells. The HIF-1α knockdown Hep-2 cells were established after clonal selection and the expression of HIF-1α was measured. The cellular features including proliferation, clonal formation, cell cycle, apoptosis and CD133 phenotype were measured in Hep-2 cells cultured under hypoxic condition in vitro. CD133+ cells were sorted from Hep-2 cells with flow cytometry. Clonal formation test and cisplatin treatment were carried out, and the expressions of related genes (Oct-4, suvivin and p53) in CD133+ cells were measured. HIF-1α knockdown Hep-2 cells was successfully established, as evidenced by the reduced mRNA and protein expressions of HIF-1α. The Hep-2 cells cultured under hypoxic microenvironment showed higher proliferation and clonal formation activity, cell cycle arrest in G0/G1, lower apoptosis, up-regulated CD133, however the effects of hypoxia reduced in HIF-1α knockdown Hep-2 cells. CD133+ cells were successfully sorted from Hep-2 cells, and the CD133+ cells showed increased clonal formation activity and cisplatin treatment resistance in hypoxia. Also the effects of hypoxia on CD133+ cells decreased with HIF-1α knockdown, showing down-regulated Oct-4 and survivin and up-regulated p53. Hypoixa can induce the features of cancer stem cells in Hep-2 cells and increase proliferation, differentiation and chemoresistant ability of CD133+ cells, which might be correlated with the changes in expressions of HIF-1α and related genes regulated by HIF-1α.

  18. Pentoxifylline induces apoptosis of HepG2 cells by reducing reactive oxygen species production and activating the MAPK signaling.

    Science.gov (United States)

    Wang, Yan; Dong, Lei; Li, Jing; Luo, Miaosha; Shang, Boxin

    2017-08-15

    Pentoxifylline (PTX) is a methylxanthine derivative and has potent anti-tumor activity. This study aimed at investigating the anti-HCC effects of PTX and associated molecular mechanisms. The effects of varying doses of PTX on viability, cell cycle and apoptosis of HepG2 cells were determined by MTT and flow cytometry, respectively. The effects of PTX on the production of reactive oxygen species (ROS), expression of pro- and anti-apoptotic regulators and activation of the MAPK signaling in HepG2 cells were analyzed by flow cytometry and Western blot assays. The effects of PTX on the growth of implanted HepG2 cells and their apoptosis in mice were examined. Our results indicated that PTX inhibited proliferation of HepG2 cells and induced HepG2 cell cycle arrest at G0/G1 phase and apoptosis in a dose- and time-dependent manner. Treatment with PTX reduced levels of ROS and Bcl-XL expression, but increased caspase 3 and caspase 9 expression and JNK and ERK1/2 phosphorylation in HepG2 cells. Pre-treatment with n-acetyl-l-cysteine (NAC), a ROS scavenger, enhanced PTX-mediated cell cycle arrest, apoptosis and the JNK and ERK MAPK activation, while pre-treatment with SP600125 or PD98509 attenuated PTX-mediated effects in HepG2 cells. Treatment with PTX inhibited the growth of implanted HCC and promoted HCC apoptosis in mice. Our data demonstrate that PTX inhibits proliferation of HepG2 cells and induces HepG2 cell apoptosis by attenuating ROS production and enhancing the MAPK activation in HepG2 cells. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. Effect of Meloxicam on laryngeal carcinoma cell line Hep-2%美洛昔康对人喉癌Hep-2细胞株作用的研究

    Institute of Scientific and Technical Information of China (English)

    沈宝茗; 周芝芳; 刘珺

    2011-01-01

    Objective To study the apoptosis induction and cell cycle effect of Meloxicam on laryngeal carcinoma cell line Hep-2 and the possible mechanism. Methods Hep-2 cell was cultured and randomly divided into experimental group and control group. At different time points after culturation , the apoptosis induced by Meloxicam and the influence on cell cycle in Hep-2 were observed by flow cytometry. At the same time , the changes of mitochondrial membrane potential in Hep - 2 were detected. Results Flow cytometry analysis showed that Meloxicam induced apoptosis of Hep - 2 in a concentration - dependent manner. Hie cell number of G1 phase in the experimental group was significantly higher than that of the control group ( P < 0. 0 5 ) . The mitochondrial membrane potential of the experimental group decreased significantly ( P < 0. 05 ) . Conclusion Meloxicam can significantly induce apoptosis and inhibit differentiation of Hep-2 cell via a possible mechanism to initiate mitochondrial apoptosis.%目的 探讨美洛昔康对喉癌细胞株Hep -2凋亡作用和对体外培养喉癌Hep -2细胞周期的影响及作用机制.方法 应用肿瘤细胞培养技术,随机分实验组和空白对照组,培养不同时间后,用流式细胞仪检测美洛昔康对Hep -2细胞凋亡发生率及对细胞周期的影响,同时检测美洛昔康作用Hep -2细胞后细胞线粒体跨膜电位的变化.结果 流式细胞仪分析显示美洛昔康呈浓度依赖性诱导Hep -2细胞凋亡,且实验组G1期细胞数明显增加,与对照组比较差异有统计学意义(P<0.05);实验组Hep -2细胞线粒体跨膜电位明显下降,与对照组比较差异有统计学意义(P<0.05).结论美洛昔康具有诱导Hep -2细胞凋亡及抑制细胞分化的作用,其机制可能与触发了线粒体凋亡途径有关.

  20. Using the stable HSPA1A promoter-driven luciferase reporter HepG2 cells to assess the overall toxicity of coke oven emissions

    Institute of Scientific and Technical Information of China (English)

    信丽丽

    2013-01-01

    Objective Using the stable HSPA1A(HSP70-1) promoter-driven luciferase reporter HepG2 cells(HepG2/HSPA1A cells) to assess the overall toxicity of coke oven emissions. Methods The stable HepG2/HSPA1A cells were treated with different concentrations of coke oven

  1. Zinc affects miR-548n, SMAD4, SMAD5 expression in HepG2 hepatocyte and HEp-2 lung cell lines.

    Science.gov (United States)

    Grider, Arthur; Lewis, Richard D; Laing, Emma M; Bakre, Abhijeet A; Tripp, Ralph A

    2015-12-01

    MicroRNAs affect disease progression and nutrient status. miR-548n increased 57 % in Zn supplemented plasma from adolescent females (ages 9 to 13 years). The purpose of this study was to determine the effects of Zn concentration in cell culture on the expression of miR-548n, SMAD4 and SMAD5 in hepatocyte (HepG2) and lung epithelium (HEp-2) cell lines. Cells were incubated for 48 h in media containing 10 % Chelex 100-treated FBS (0 μM Zn), or with 15 or 50 μM Zn, before isolation of total RNA and cDNA. Expression of miR-548n, SMAD4 and SMAD5 was measured by qPCR. The ΔΔCT method was used to calculate the fold-change, and 15 µM expression levels were used as reference values. HepG2 miR-548n expression decreased 5-fold, and SMAD4 expression increased 4-fold in the absence of Zn, while HEp-2 miR-548n expression increased 10.5-fold, and SMAD5 expression increased 20-fold in the absence of Zn. HEp-2 miR-548n expression increased 23-fold, while SMAD4 expression decreased twofold, in 50 μM Zn-treated cells. However, SMAD4 and SMAD5 expression was not correlated. These data indicate that miR-548n expression is in part regulated by Zn in a cell-specific manner. SMAD4 and SMAD5 are genes in the TGF-β/BMP signaling pathway, and SMAD5 is a putative target for miR-548n; Zn participates in regulating this pathway through controlling SMAD4 and SMAD5 expression. However, SMAD5 expression may be more sensitive to Zn than to miR-548n since SMAD5 expression was not inversely correlated with miR-548n expression.

  2. A search for hep solar neutrinos at the Sudbury Neutrino Observatory

    Science.gov (United States)

    Winchester, Timothy J.

    Solar neutrinos from the fusion hep reaction, (helium-3 fusing with a proton to become helium-4, releasing a positron and neutrino), have previously remained undetected due to their flux being about one one-thousandth that of boron-8 neutrinos. These neutrinos are interesting theoretically because they are less dependent on solar composition than other solar neutrinos, and therefore provide a somewhat independent test of the Standard Solar Model. In this analysis, we develop a new event fitter for existing data from the Sudbury Neutrino Observatory. We also use the fitter to remove backgrounds that previously limited the fiducial volume, which we increase by 30%. We use a modified Wald-Wolfowitz test to increase the amount of live time by 200 days (18%) and show that this data is consistent with the previously-used data. Finally, we develop a Bayesian analysis technique to make full use of the posterior distributions of energy returned by the event fitter. In the first significant detection of hep neutrinos, we find that the most-probable rate of hep events is 3.5 x 10. 4 /cm. 2/s, which is significantly higher than the theoretical prediction. We find that the 95% credible region extends from 1.0 to 7.2 x 10. 4 /cm. 2/s, and that we can therefore exclude a rate of 0 hep events at greater than 95% probability.

  3. West Foster Creek 2007 Follow-up Habitat Evaluation Procedures (HEP) Report.

    Energy Technology Data Exchange (ETDEWEB)

    Ashley, Paul R.

    2008-02-01

    A follow-up habitat evaluation procedures (HEP) analysis was conducted on the West Foster Creek (Smith acquisition) wildlife mitigation site in May 2007 to determine the number of additional habitat units to credit Bonneville Power Administration (BPA) for providing funds to enhance and maintain the project site as partial mitigation for habitat losses associated with construction of Grand Coulee Dam. The West Foster Creek 2007 follow-up HEP survey generated 2,981.96 habitat units (HU) or 1.51 HUs per acre for a 34% increase (+751.34 HUs) above baseline HU credit (the 1999 baseline HEP survey generated 2,230.62 habitat units or 1.13 HUs per acre). The 2007 follow-up HEP analysis yielded 1,380.26 sharp-tailed grouse (Tympanuchus phasianellus) habitat units, 879.40 mule deer (Odocoileus hemionus) HUs, and 722.29 western meadowlark (Sturnella neglecta) habitat units. Mule deer and sharp-tailed grouse habitat units increased by 346.42 HUs and 470.62 HUs respectively over baseline (1999) survey results due largely to cessation of livestock grazing and subsequent passive restoration. In contrast, the western meadowlark generated slightly fewer habitat units in 2007 (-67.31) than in 1999, because of increased shrub cover, which lowers habitat suitability for that species.

  4. Estudo do sistema portal hepático no pato doméstico (Cairina moshata

    Directory of Open Access Journals (Sweden)

    Marcos Rogério Alves Pinto

    1999-01-01

    Full Text Available Estudou-se o comportamento do sistema portal hepático em 30 patos domésticos, adultos, machos e fêmeas. O sistema apresenta-se constituído por duas veias portais hepáticas: direita e esquerda. A veia portal hepática esquerda é formada por veias gástricas esquerdas (em número de 1 a 2, veias da margem ventral do ventrículo, veia pilórica e veia proventricular caudal. A veia portal hepática direita é formada pela veia mesentérica caudal, veia mesentérica cranial, veia proventrículo-esplênica e veia gastropancreaticoduodenal. A veia mesentérica caudal recebe tributárias do mesorreto, cloaca e junção ileocecocólica. A veia mesentérica cranial recebe tributárias jejunais (em número de 12 a 21 e se anastomosa com a veia mesentérica caudal, formando a veia mesentérica comum. A veia pancreaticoduodenal recebe duas veias gástricas direitas, constituindo assim a veia gastropancreaticoduodenal. A veia proventrículo-esplênica é formada pelas veias proventriculares dorsal e direita e pelas veias esplênicas.

  5. SeqHepB: a sequence analysis program and relational database system for chronic hepatitis B.

    Science.gov (United States)

    Yuen, Lilly K W; Ayres, Anna; Littlejohn, Margaret; Colledge, Danielle; Edgely, Andrew; Maskill, William J; Locarnini, Stephen A; Bartholomeusz, Angeline

    2007-07-01

    SeqHepB is a combination of a HBV genome sequence analysis program and a relational database that houses data collected from multiple data sources. Registered users can access the sequence analysis component of SeqHepB online for rapid and detailed interrogation of HBV genomic sequences. Its main function is to determine the HBV genotype, identify key mutations associated with antiviral resistance, and identify clinically important HBV mutants. All information generated is uploaded into a database and integrated with patient medical records, pathology laboratory tests, and supplemental virology results such as in vitro drug cross-resistance values. Combined with structured query language (SQL) queries developed in the database, it is possible to extract and correlate clinical, virological, and in vitro phenotypic data rapidly and efficiently. An important component of SeqHepB is its ability to integrate mutations detected within the reverse transcriptase (RT) and locate them onto a three-dimensional (3D) model of the HBV RT that can be viewed at any angle with known antiviral drug molecules in the catalytic pocket of the enzyme. SeqHepB will enable virologists and physicians to individualise patient management, cope with the explosion of antiviral associated HBV mutations, and to conduct cross-sectional retrospective or prospective studies on HBV-infected individuals during therapy.

  6. Probióticos en las enfermedades hepáticas

    Directory of Open Access Journals (Sweden)

    Germán Soriano

    2013-06-01

    Full Text Available En las enfermedades hepáticas, especialmente en la cirrosis y la esteatohepatitis no alcohólica, las alteraciones en la microbiota intestinal y en los mecanismos de respuesta inflamatoria desempeñan un papel importante en la progresión de la enfermedad y el desarrollo de complicaciones. Los probióticos, debido a su capacidad para modular la flora intestinal, la permeabilidad intestinal y la respuesta inmunológica, pueden ser eficaces en el tratamiento de las enfermedades hepáticas y en la prevención de las complicaciones de la cirrosis. Diversos estudios han demostrado la eficacia de diferentes probióticos en el tratamiento de la encefalopatía hepática mínima y en la prevención de episodios de encefalopatía aguda. Otros campos en los que se han observado efectos beneficiosos de los probióticos son el tratamiento de la esteatohepatitis no alcohólica y la prevención de infecciones bacterianas en los pacientes con trasplante hepático. Sin embargo, son precisos más estudios para confirmar la eficacia y seguridad de los probióticos en los pacientes con enfermedades hepaticas, así como para conocer mejor sus mecanismos de acción.

  7. PPARγ pathway activation results in apoptosis and COX-2 inhibition in HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    Ming-Yi Li; Hua Deng; Jia-Ming Zhao; Dong Dai; Xiao-Yu Tan

    2003-01-01

    AIM: To investigate whether troglitazone (TGZ), theperoxisome proliferator-activated receptor (PPAR) gammaligand, can induce apoptosis and inhibit cell proliferation inhuman liver cancer cell line HepG2 and to explore themolecular mechanisms. METHODS: [3-(4,5)-dimethyithiazol-2-yl]-2,5-diphenyltetrazolium bromide (NTT), [3H] Thymidine incorporation,Hochest33258 staining, DNA ladder, enzyme-linkedimmunosorbent assay (ELISA), RT-PCR, Northern and Western blotting analyses were employed to investigate the effect of TGZ on HepG2 cells and related molecular mechanisms.RESULTS: TGZ was found to inhibit the growth of HepG2cells and to induce apoptosis. During the process, the expression of COX-2 mRNA and protein and Bcl-2 protein was down-regulated, while that of Bax and Bak proteins was up-regulated, and the activity of caspase-3 was elevated.Furthermore, the level of PGE2 was decreased transiently after 12 h of treatment with 30 gM troglitazone. CONCLUSION: TGZ inhibits cell proliferation and induces apoptosis in HepG2 cells, which may be associated with the activation of caspase-3-like proteases, down-regulation of the expression of COX-2 mRNA and protein, Bcl-2 protein,the elevation of PGE2 levels, and up-regulation of the expressions of Bax and Bak proteins.

  8. Octreotide induces caspase activation and apoptosis inhuman hepatoma HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    Nikos J Tsagarakis; Ioannis Drygiannakis; Antonis G Batistakis; George Kolios; Elias A Kouroumalis

    2011-01-01

    AIM: To investigate the role of octreotide on cellular proliferation and apoptosis of human hepatoma (HepG2) cells.METHODS: We studied cellular proliferation, apoptosis and the possible internal caspase-mediated apoptosis pathway involved, after treatment of HepG2 carcinomacells with octreotide in comparison with the apoptosis caused by tumor necrosis factor-α (TNF-α). Activities of caspase-3, caspase-9, caspase-8 and caspase-2 were studied, while apoptosis was investigated through detection of DNA fragmentation and through identification of apoptotic cells with the annexin-V/propidium iodide flow cytometric method.RESULTS: After an initial increase in HepG2 cellular proliferation, a significant inhibition was observed with 10-8 mol/L octreotide, while TNF-α dose-dependentlydecreased proliferation. Early and late apoptosis was significantly increased with both substances. Octreotide significantly increased caspase-3, caspase-8 andcaspase-2 activity. TNF-α significantly increased only caspase-2. Cellular proliferation was decreased after treatment with octreotide or TNF-α alone but, in contrast to TNF-α, octreotide decreased proliferation onlyat concentrations of 10-8 mol/L, while lower concentrations increased proliferation.CONCLUSION: Our findings are suggestive of caspasemediated signaling pathways of octreotide antitumor activity in HepG2 cells, and indicate that measurementsof serum octreotide levels may be important, at least in clinical trials, to verify optimal therapeutic drug concentrations.

  9. Effects of elaidic acid in a HepG2-SF liver cell model

    DEFF Research Database (Denmark)

    Hansen, Toke Peter Krogager

    lipidmetabolismen når HepG2-SF celler blev inkuberet med elaidinsyre sammenlignet med oleinsyre eller stearinsyre. Den mest fremtrædende ændring var en opregulering af enzymer som syntetiserer kolesterol og fedtsyrer, hvilken indikerede aktivering af sterol regulatory element-binding proteins (SREBPs). Dog blev...

  10. CalcHEP 3.4 for collider physics within and beyond the Standard Model

    CERN Document Server

    Belyaev, Alexander; Pukhov, Alexander

    2012-01-01

    We present version 3.4 of the CalcHEP software package which is designed for effective evaluation and simulation of high energy physics collider processes at parton level. The main features of CalcHEP are the computation of Feynman diagrams, integration over multi-particle phase space and event simulation at parton level. The principle attractive key-points along these lines are that it has: a) an easy startup even for those who are not familiar with CalcHEP; b) a friendly and convenient graphical user interface; c) the option for a user to easily modify a model or introduce a new model by either using the graphical interface or by using an external package with the possibility of cross checking the results in different gauges; d) a batch interface which allows to perform very complicated and tedious calculations connecting production and decay modes for processes with many particles in the final state. With this features set, CalcHEP can efficiently perform calculations with a high level of automation from a...

  11. Biomarcadores para fibrosis hepática, avances, ventajas y desventajas

    Directory of Open Access Journals (Sweden)

    A. Cequera

    2014-07-01

    En este trabajo se describen los biomarcadores empleados actualmente para el estudio de la fibrosis hepática en humanos, incluyendo sus ventajas y desventajas y la implementación de tecnologías de nueva generación, y la evaluación de las posibilidades de su empleo para el diagnóstico.

  12. Curcumin and (-)-epigallocatechin-3-gallate attenuate acrylamide-induced proliferation in HepG2 cells.

    Science.gov (United States)

    Shan, Xiaoyun; Li, Yuan; Meng, Xulian; Wang, Pengqi; Jiang, Pan; Feng, Qing

    2014-04-01

    Acrylamide, a proven rodent carcinogen, is present in carbohydrate-rich food heated at high temperatures. It can be metabolized into glycidamide mainly by cytochrome P450 2E1 (CYP2E1). The fact that acrylamide is a potential carcinogen to human-beings draws public attention recently. This study aimed to elucidate the effect of acrylamide at low doses on proliferation of HepG2 cells, and to test whether the two well-studied chemopreventive agents, curcumin and (-)-epigallocatechin-3-gallate (EGCG), would have antagonistic effects against acrylamide. The results showed that lower concentration of acrylamide (⩽100μM) significantly increased the proliferation of HepG2 cells, but not of the other cancer cells (MDA-231, HeLa, A549, and PC-3). Only in HepG2 cells, low concentration of acrylamide was able to induce CYP2E1 expression significantly. Knockdown of CYP2E1 restrained acrylamide to increase viability of HepG2 cells. In addition, acrylamide raised expression of epidermal growth factor receptor (EGFR), cyclin D1 and nuclear factor-κB (NF-κB), which contributed to cell proliferation. Both curcumin and EGCG effectively reduced acrylamide-induced proliferation, as well as protein expression of CYP2E1, EGFR, cyclin D1 and NF-κB. All these results suggest that low concentration of acrylamide may contribute to progression of hepatocellular carcinoma (HCC). Curcumin or EGCG could prevent acrylamide triggering this effect.

  13. Intracellular localization of Saffold virus Leader (L) protein differs in Vero and HEp-2 cells.

    Science.gov (United States)

    Xu, Yishi; Victorio, Carla Bianca Luena; Ng, Qimei; Prabakaran, Mookkan; Tan, Yee-Joo; Chua, Kaw Bing

    2016-10-12

    The Saffold virus (SAFV) genome is translated as a single long polyprotein precursor and co-translationally cleaved to yield 12 separate viral proteins. Little is known about the activities of SAFV proteins although their homologs in other picornaviruses have already been described. To further support research on functions and activities of respective viral proteins, we investigated the spatio-temporal distribution of SAFV proteins in Vero and HEp-2 cells that had been either transfected with plasmids that express individual viral proteins or infected with live SAFV. Our results revealed that, with the exception of the Leader (L) protein, all viral proteins were localized in the cytoplasm at all the time points assayed. The L protein was found in the cytoplasm at an early time point but was subsequently translocated to the nucleus of HEp-2, but not Vero, cells. This was observed in both transfected and infected cells. Further mutational analysis of L protein revealed that Threonine 58 of the Ser/Thr-rich domain of L protein is crucial for protein trafficking between the cytoplasm and nucleus in HEp-2 cells. These findings contribute to a deeper understanding and stimulate investigation of the differetial cellular responses of HEp-2 cells in comparison to other mammalian cell lines during SAFV infection.

  14. Anti-hepatocarcinoma effects of resveratrol nanoethosomes against human HepG2 cells

    Science.gov (United States)

    Meng, Xiang-Ping; Zhang, Zhen; Chen, Tong-sheng; Wang, Yi-fei; Wang, Zhi-ping

    2017-02-01

    Hepatocarcinoma, a malignant cancer, threaten human life badly. It is a current issue to seek the effective natural remedy from plant to treat cancer due to the resistance of the advanced hepatocarcinoma to chemotherapy. Resveratrol (Res) has been widely investigated with its strong anti-tumor activity. However, its low oral bioavailability restricts its wide application. In this study, we prepared resveratrol nanoethosomes (ResN) via ethanol injection method. The in vitro anti-hepatocarcinoma effects of ResN relative to efficacy of bulk Res were evaluated on proliferation and apoptosis of human HepG2 cells. ResN were spherical vesicles and its particle diameter, zeta potential were (115.8 +/- 1.3) nm and (-12.8 +/- 1.9) mV, respectively. ResN exhibited significant inhibitory effects against human HepG2 cells by MTT assay, and the IC50 value was 49.2 μg/ml (105.4 μg/ml of Res bulk solution). By flow cytometry assay, there was an increase in G2/M phase cells treated with ResN. The results demonstrated ResN could effectively block the G2/M phase of HepG2 cells, which can also enhance the inhibitory effect of Res against HepG2 cells.

  15. HEPS Tool for Schools: A Guide for School Policy Development on Healthy Eating and Physical Activity

    Science.gov (United States)

    Simovska, Venka; Dadaczynski, Kevin; Viig, Nina Grieg; Bowker, Sue; Woynarowska, Barbara; de Ruiter, Silvia; Buijs, Goof

    2010-01-01

    The HEPS Tool for Schools provides ideas, guidelines and suggested techniques to help schools in their development of school policy on healthy eating and physical activity. There is growing evidence that a comprehensive whole school policy on healthy eating and physical activity can lead to better academic outcomes of pupils as well as promoting…

  16. Hyperglycemia and anthocyanin inhibit quercetin metabolism in HepG2 cells

    Science.gov (United States)

    A high glucose (Glu) milieu promotes generation of reactive oxygen species, which may not only cause cellular damage, but also modulate phase II enzymes that are responsible for the metabolism of flavonoids. Thus, we examined the effect of a high Glu milieu on quercetin (Q) metabolism in HepG2 cells...

  17. Tumores hepáticos incomuns: ensaio iconográfico - Parte 1

    Directory of Open Access Journals (Sweden)

    Bruno Cheregati Pedrassa

    2014-10-01

    Full Text Available A maioria dos tumores hepáticos primários malignos é representada pelo carcinoma hepatocelular e pelo colangiocarcinoma, entretanto, uma variedade de outras lesões hepáticas incomuns pode ser encontrada. Lesões comuns como o hemangioma, a hiperplasia nodular focal e as metástases são bem conhecidas e já foram extensamente documentadas na literatura. O diagnóstico das lesões hepáticas típicas pode ser feito com alguma segurança utilizando-se os diversos métodos de imagem; por outro lado, as lesões incomuns são geralmente um desafio diagnóstico para o radiologista. Nesta primeira parte do estudo abordaremos cinco tumores hepáticos incomuns - o angiossarcoma, o angiomiolipoma, o cistoadenoma/carcinoma biliar, o hemangioendotelioma epitelioide e o carcinoma hepatocelular fibrolamelar -, suas principais características e achados de imagem, com foco na tomografia computadorizada e na ressonância magnética.

  18. Mangiferin: A xanthone attenuates mercury chloride induced cytotoxicity and genotoxicity in HepG2 cells.

    Science.gov (United States)

    Kaivalya, Mudholkar; Nageshwar Rao, B N; Satish Rao, B S

    2011-01-01

    Mangiferin (MGN), a dietary C-glucosylxanthone present in Mangifera indica, is known to possess a spectrum of beneficial pharmacological properties. This study demonstrates antigenotoxic potential of MGN against mercuric chloride (HgCl2)-induced genotoxicity in HepG2 cell line. Treatment of HepG2 cells with various concentrations of HgCl2 for 3 h caused a dose-dependent increase in micronuclei frequency and elevation in DNA strand breaks (olive tail moment and tail DNA). Pretreatment with MGN significantly (p inhibited HgCl2 -induced (20 µM for 30 h) DNA damage. An optimal antigenotoxic effect of MGN, both in micronuclei and comet assay, was observed at a concentration of 50 µM. Furthermore, HepG2 cells treated with various concentrations of HgCl2 resulted in a dose-dependent increase in the dichlorofluorescein fluorescence, indicating an increase in the generation of reactive oxygen species (ROS). However, MGN by itself failed to generate ROS at a concentration of 50 µM, whereas it could significantly decrease HgCl2 -induced ROS. Our study clearly demonstrates that MGN pretreatment reduced the HgCl2-induced DNA damage in HepG2 cells, thus demonstrating the genoprotective potential of MGN, which is mediated mainly by the inhibition of oxidative stress.

  19. Piomiosite associada ao diabetes mellitus e cirrose hepática

    OpenAIRE

    2010-01-01

    A piomiosite é uma infecção primária do músculo esquelético mais comum nos países tropicais. Adultos que desenvolvem a doença apresentam, na maioria dos casos, comorbidades associadas que comprometem o sistema imunológico, entre elas diabetes mellitus e cirrose hepática

  20. The Evaluation of Health Education Program (HEP) of 9th Graders

    Science.gov (United States)

    Erdogan, Polat; Gürol, Mehmet

    2016-01-01

    The main purpose of evaluation is to improve the quality of program. So, the purpose of this study was to evaluate the Health Education Program of 9th graders (HEP) with Educational Criticism Model of Eisner. The study was conducted with the qualitative research method. A holistic single case design was employed in this study. The typical case…

  1. HEp-2 Cell Classification via Combining Multiresolution Co-Occurrence Texture and Large Region Shape Information.

    Science.gov (United States)

    Qi, Xianbiao; Zhao, Guoying; Li, Chun-Guang; Guo, Jun; Pietikainen, Matti

    2017-03-01

    Indirect immunofluorescence imaging of human epithelial type 2 (HEp-2) cell image is an effective evidence to diagnose autoimmune diseases. Recently, computer-aided diagnosis of autoimmune diseases by the HEp-2 cell classification has attracted great attention. However, the HEp-2 cell classification task is quite challenging due to large intraclass and small interclass variations. In this paper, we propose an effective approach for the automatic HEp-2 cell classification by combining multiresolution co-occurrence texture and large regional shape information. To be more specific, we propose to: 1) capture multiresolution co-occurrence texture information by a novel pairwise rotation-invariant co-occurrence of local Gabor binary pattern descriptor; 2) depict large regional shape information by using an improved Fisher vector model with RootSIFT features, which are sampled from large image patches in multiple scales; and 3) combine both features. We evaluate systematically the proposed approach on the IEEE International Conference on Pattern Recognition (ICPR) 2012, the IEEE International Conference on Image Processing (ICIP) 2013, and the ICPR 2014 contest datasets. The proposed method based on the combination of the introduced two features outperforms the winners of the ICPR 2012 contest using the same experimental protocol. Our method also greatly improves the winner of the ICIP 2013 contest under four different experimental setups. Using the leave-one-specimen-out evaluation strategy, our method achieves comparable performance with the winner of the ICPR 2014 contest that combined four features.

  2. Surface Grafted Glycopolymer Brushes to Enhance Selective Adhesion of HepG2 Cells

    DEFF Research Database (Denmark)

    Chernyy, Sergey; Jensen, Bettina Elisabeth Brøgger; Shimizu, Kyoko;

    2013-01-01

    of the cell periphery. On the other hand the cells on bare glass substrate display spheroid morphology. Further analysis using ToF-SIMS imaging shows that the HepG2 cells on glycopolymer surfaces is enriched with protein fragment along the cell periphery which is absent in the case of cells on bare glass...

  3. Polarization Restricts Hepatitis C Virus Entry into HepG2 Hepatoma Cells

    NARCIS (Netherlands)

    Mee, Christopher J.; Harris, Helen J.; Farquhar, Michelle J.; Wilson, Garrick; Reynolds, Gary; Davis, Christopher; van IJzendoorn, Sven C. D.; Balfe, Peter; McKeating, Jane A.

    2009-01-01

    The primary reservoir for hepatitis C virus (HCV) replication is believed to be hepatocytes, which are highly polarized with tight junctions (TJ) separating their basolateral and apical domains. HepG2 cells develop polarity over time, resulting in the formation and remodeling of bile canalicular

  4. Intracellular glutathione regulates Andrographolide-induced cytotoxicity on hepatoma Hep3B cells.

    Science.gov (United States)

    Ji, Lili; Shen, Kaikai; Liu, Jun; Chen, Ying; Liu, Tianyu; Wang, Zhengtao

    2009-01-01

    Andrographolide (ANDRO), a diterpenoid lactone isolated from the traditional herbal plant Andrographis paniculata, was reported to induce apoptosis in hepatoma Hep3B cells in our previous study (Ji LL, Liu TY, Liu J, Chen Y, Wang ZT. Andrographolide inhibits human hepatoma-derived Hep3B cells growth through the activation of c-Jun N-terminal kinase. Planta Med 2007; 73: 1397-1401). The present investigation was carried out to observe whether cellular reduced glutathione (GSH) plays important roles in ANDRO-induced apoptosis. ANDRO initially increased intracellular GSH levels which then decreased later, while inhibition of cellular GSH synthesis by L-Buthionine-(S,R)-sulfoximine (BSO) augmented ANDRO-induced cytotoxicity and apoptosis in Hep3B cells. On the other hand, the thiol antioxidant dithiothreitol (DTT) rescued ANDRO-depleted cellular GSH, and abrogated ANDRO-induced cytotoxicity and apoptosis. Furthermore, BSO pretreatment augmented ANDRO-decreased expression of antioxidant protein thioredoxin 1 (Trx1), while DTT reversed this decrease. Further results showed that ANDRO increased the activity of the GSH-related antioxidant enzyme glutathione peroxidase (GPx) and the production of intracellular reactive oxygen species (ROS). Taken together, this study demonstrates that the intracellular redox system plays important roles in regulating the cytotoxicity of ANDRO on hepatoma Hep3B cells.

  5. 75 FR 3216 - Office of Elementary and Secondary Education; High School Equivalency Program (HEP)

    Science.gov (United States)

    2010-01-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF EDUCATION Office of Elementary and Secondary Education; High School Equivalency Program (HEP) Catalog of Federal... ndez de Santa Ana, Assistant Secretary for Elementary and Secondary Education. BILLING CODE 4000-01-P...

  6. Habitat Evaluation Procedures (HEP) Report; Yakama Nation Wildlife Management Areas, Technical Report 1999-2000.

    Energy Technology Data Exchange (ETDEWEB)

    Raedeke, Kenneth; Raedeke, Dorothy

    2000-06-01

    Construction of the Dalles, Bonneville, McNary, and John Day Dams on the Columbia River by the federal government resulted in a substantial loss of riparian bottomland along the Columbia River. Impacts associated with the Mid-Columbia Projects were assessed for several wildlife species using the Habitat Evaluation Procedures (HEP) developed by the U.S. Fish and Wildlife Service (USDI-FWS 1980). The studies documented the loss of riparian habitat and established a baseline against which mitigation measures could be developed (USDI-FWS 1990 and USDE-BPA 1990). The impact assessments established a mitigation goal, a portion of which would be satisfied by the creation, restoration, and enhancement of riparian lands on tributaries to the Columbia River, including the Yakima Valley. The Yakama Nation (YN), the Northwest Power Planning Council, and the Bonneville Power Administration have agreed that the Yakama Nation would be funded to implement habitat restoration on lands within and adjacent to their reservation. Some of the targeted lands are owned by the Yakama Nation, some are trust lands, and some lands have been in private ownership. Since the early 1990s, the Yakama Nation has been in the process of assembling riparian lands into Wildlife Management Areas, and restoring natural hydrology and natural cover-types on these lands. The Northwest Power Planning Council, through the Bonneville Power Administration, has supported the program. HEP studies were performed by the Yakama Nation in 1990 (Bich et al. 1991) to establish baseline conditions and inventory wildlife habitat at the initiation of the restoration project. The 1990 HEP used a simplified version of the HEP to quantify baseline conditions. The present assessment is designed to evaluate the progress of the mitigation plan in meeting its stated goals. The 1999 HEP assessment has two distinct tasks: (1) Evaluation of the mitigation plan as currently implemented using the simplified YN HEP methodologies for

  7. Dynamic provisioning of a HEP computing infrastructure on a shared hybrid HPC system

    Science.gov (United States)

    Meier, Konrad; Fleig, Georg; Hauth, Thomas; Janczyk, Michael; Quast, Günter; von Suchodoletz, Dirk; Wiebelt, Bernd

    2016-10-01

    Experiments in high-energy physics (HEP) rely on elaborate hardware, software and computing systems to sustain the high data rates necessary to study rare physics processes. The Institut fr Experimentelle Kernphysik (EKP) at KIT is a member of the CMS and Belle II experiments, located at the LHC and the Super-KEKB accelerators, respectively. These detectors share the requirement, that enormous amounts of measurement data must be processed and analyzed and a comparable amount of simulated events is required to compare experimental results with theoretical predictions. Classical HEP computing centers are dedicated sites which support multiple experiments and have the required software pre-installed. Nowadays, funding agencies encourage research groups to participate in shared HPC cluster models, where scientist from different domains use the same hardware to increase synergies. This shared usage proves to be challenging for HEP groups, due to their specialized software setup which includes a custom OS (often Scientific Linux), libraries and applications. To overcome this hurdle, the EKP and data center team of the University of Freiburg have developed a system to enable the HEP use case on a shared HPC cluster. To achieve this, an OpenStack-based virtualization layer is installed on top of a bare-metal cluster. While other user groups can run their batch jobs via the Moab workload manager directly on bare-metal, HEP users can request virtual machines with a specialized machine image which contains a dedicated operating system and software stack. In contrast to similar installations, in this hybrid setup, no static partitioning of the cluster into a physical and virtualized segment is required. As a unique feature, the placement of the virtual machine on the cluster nodes is scheduled by Moab and the job lifetime is coupled to the lifetime of the virtual machine. This allows for a seamless integration with the jobs sent by other user groups and honors the fairshare

  8. Variability in the recognition of distinctive immunofluorescence patterns in different brands of HEp-2 cell slides

    Directory of Open Access Journals (Sweden)

    Alessandra Dellavance

    2013-06-01

    Full Text Available INTRODUCTION: Indirect immunofluorescence on HEp-2 cells is considered the gold standard for the detection of autoantibodies against cellular antigens. However, the culture conditions, cell fixation and permeabilization processes interfere directly in the preservation and spatial distribution of antigens. Therefore, one can assume that certain peculiarities in the processing of cellular substrate may affect the recognition of indirect immunofluorescence patterns associated with several autoantibodies. OBJECTIVE: To evaluate a panel of serum samples representing nuclear, nucleolar, cytoplasmic, mitotic apparatus, and chromosome plate patterns on HEp-2 cell substrates from different suppliers. MATERIALS AND METHODS: Seven blinded observers, independent from the three selected reference centers, evaluated 17 samples yielding different nuclear, nucleolar, cytoplasmic and mitotic apparatus patterns on HEp-2 cell slides from eight different brands. The slides were coded to maintain confidentiality of both brands and participating centers. RESULTS: The 17 HEp-2 cell patterns were identified on most substrates. Nonetheless, some slides showed deficit in the expression of several patterns: nuclear coarse speckled/U1-ribonucleoprotein associated with antibodies against RNP (U1RNP, centromeric protein F (CENP-F, proliferating cell nuclear antigen (PCNA, cytoplasmic fine speckled associated with anti-Jo-1 antibodies (histidyl synthetase, nuclear mitotic apparatus protein 1 (NuMA-1 and nuclear mitotic apparatus protein 2 (NuMA-2. CONCLUSION: Despite the overall good quality of the assessed HEp-2 substrates, there was considerable inconsistency in results among different commercial substrates. The variations may be due to the evaluated batches, hence generalizations cannot be made as to the respective brands. It is recommended that each new batch or new brand be tested with a panel of reference sera representing the various patterns.

  9. Excesso de peso em pacientes submetidos ao transplante hepático

    Directory of Open Access Journals (Sweden)

    Lucilene Rezende Anastácio

    2013-12-01

    Full Text Available Esta revisão tem por objetivo descrever a incidência e prevalência de excesso de peso, sobrepeso e obesidade pós-transplante hepático e as consequências associadas a ele. Foi realizada revisão bibliográfica com consulta nas bases Medline/Pubmed, SciELO, EMBASE, LILACS com o cruzamento dos seguintes descritores: transplante hepático; sobrepeso; obesidade; ganho de peso. O excesso de peso é incidente em mais de 60% dos pacientes submetidos ao transplante hepático e as taxas de obesidade ultrapassam 20% já no primeiro ano do pós-operatório, período em que ocorre o maior ganho de peso relativo. Estudos revelaram que entre 60% e 70% dos pacientes submetidos ao transplante de fígado apresentam excesso de peso após o terceiro ano e quase 90% deles com obesidade abdominal. Os fatores associados são os mais variados, dentre os quais se destacam maior idade, história familiar de excesso de peso, excesso de peso anterior à doença hepática, dentre outros. A contribuição da medicação imunossupressora ainda permanece controversa. Dentre as consequências do excesso de peso estão a esteatose hepática, esteatohepatite, diabete melito, hipertensão, dislipidemias, doenças cardiovasculares e morte.

  10. Habitat Evaluation Procedures (HEP) Report : Ladd Marsh Wildlife Area, 2004-2006 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Ashley, Paul; Wagoner, Sara

    2006-05-01

    The Regional HEP Team (RHT) and Oregon Department of Fish and Wildlife (ODFW) staff conducted a follow-up habitat evaluation procedures (HEP) analysis on the Ladd Marsh Wildlife Management Area (LMWA) in May 2005. The 2005 HEP assessment resulted in a total of 647.44 HUs, or 0.76 HUs/acre. This is an increase of 420.34 HUs (0.49 HUs/acre) over 2001 HEP survey results. The most significant increase in HUs occurred on the Wallender and Simonis parcels which increased by 214.30 HUs and 177.49 HUs respectively. Transects were established at or near 2001 HEP analysis transect locations whenever possible. ODFW staff biologists assisted the RHT re-establish transect locations and/or suggested areas for new surveys. Since 2001, significant changes in cover type acreage and/or structural conditions have occurred due to conversion of agriculture cover types to emergent wetland and grassland cover types. Agricultural lands were seeded to reestablish grasslands and wetlands were restored through active management and manipulation of extant water sources including natural stream hydrology/flood regimes and available irrigation. Grasslands increased on the Wallender parcel by 21% (65 acres), 23% (71 acres) at the Simonis site, and 39% (62 acres) at Conley Lake. The emergent wetland cover type also changed significantly increasing 60% (184 acres) at Wallender and 59% (184 acres) on the Simonis tract. Today, agriculture lands (crop and grazed pasture) have been nearly eliminated from Bonneville Power Administration (BPA) mitigation project lands located on the LMWA.

  11. Habitat Evaluation Procedures (HEP) Report; Tacoma Creek South Project, Technical Report 2003-2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-02-01

    On July 6, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Tacoma Creek South property, an acquisition completed by the Kalispel Tribe of Indians in June 2004. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, muskrat, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Tacoma Creek South Project provides a total of 190.79 Habitat Units (HUs) for the species evaluated. Emergent wetlands provide 20.51 HUs for Canada goose, mallard, and muskrat. Grassland provides 1.65 HUs for Canada goose and mallard. Scrub-shrub vegetation provides 11.76 HUs for mallard, yellow warbler, and white-tailed deer. Conifer forest habitat provides 139.92 HUs for bald eagle, black-capped chickadee, and white-tailed deer. Deciduous forest also provides 19.15 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. The objective of using HEP at the Tacoma Creek South Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  12. Habitat Evaluation Procedures (HEP) Report; Upper Trimble Project, Technical Report 2004-2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-02-01

    On July 13, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Upper Trimble property, an acquisition completed by the Kalispel Tribe of Indians in March 2004. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, muskrat, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Upper Trimble Project provides a total of 250.67 Habitat Units (HUs) for the species evaluated. Wet meadow provides 136.92 HUs for mallard, muskrat, and Canada goose. Mixed forest habitat provides 111.88 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Scrub-shrub vegetation provides 1.87 HUs for yellow warbler, and white-tailed deer. The objective of using HEP at the Upper Trimble Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  13. Habitat Evaluation Procedures (HEP) Report; West Beaver Lake Project, Technical Report 2005

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-05-01

    On September 7, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the West Beaver Lake property, an acquisition completed by the Kalispel Tribe of Indians in September 2004. Evaluation species and appropriate models include bald eagle, black-capped chickadee, mallard, muskrat, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The West Beaver Lake Project provides a total of 82.69 Habitat Units (HUs) for the species evaluated. Emergent wetland habitat provides 8.80 HUs for mallard, muskrat, and Canada goose. Conifer forest habitat provides 70.33 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Open water provides 3.30 HUs for mallard, muskrat, and Canada goose. The objective of using HEP at the West Beaver Lake Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  14. Habitat Evaluation Procedures (HEP) Report, Pend Oreille Wetlands Wildlife II Project, Technical Report 2002.

    Energy Technology Data Exchange (ETDEWEB)

    Holmes, Darren

    2003-06-01

    In 2002, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Pend Oreille Wetlands Wildlife II Project, an acquisition completed by the Kalispel Tribe of Indians in 1997. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, and yellow warbler. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Pend Oreille Wetlands Wildlife II Project provides a total of 313.91 Habitat Units (HUs) for the species evaluated. Open water habitat provides 16.08 HUs for Canada goose and mallard. Shoreline and island habitat provide 7.36 HUs fore Canada goose and mallard. Wet meadow provides 117.62 HUs for Canada goose and mallard. Scrub-shrub wetlands provide 9.78 HUs for yellow warbler, mallard, and white-tailed deer. Deciduous forested wetlands provide 140.47 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. Conifer forest provides 22.60 HUs for bald eagle, black-capped chickadee, and white-tailed deer. The objective of using HEP at the Pend Oreille Wetlands Wildlife II Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  15. Habitat Evaluation Procedures (HEP) Report; Priest River Project, Technical Report 2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-05-01

    On July 6, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Priest River property, an acquisition completed by the Kalispel Tribe of Indians in 2001. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Priest River Project provides a total of 140.73 Habitat Units (HUs) for the species evaluated. Conifer forest habitat provides 60.05 HUs for bald eagle, black-capped chickadee, and white-tailed deer. Grassland meadow habitat provides 7.39 HUs for Canada goose and mallard. Scrub-shrub vegetation provides 71.13 HUs for mallard, yellow warbler, and white-tailed deer. Open water habitat provides 2.16 HUs for Canada goose and mallard. The objective of using HEP at the Priest River Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  16. Habitat Evaluation Procedures (HEP) Report; North Eaton Lake, Technical Report 2005.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-11-01

    On July 6, 2005, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the North Eaton Lake property, an acquisition completed by the Kalispel Tribe of Indians in November 2004. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, muskrat, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The North Eaton Lake Project provides a total of 235.05 Habitat Units (HUs) for the species evaluated. Open water habitat provides 9.38 HUs for Canada goose, mallard and muskrat. Emergent wetland habitat provides 11.36 HUs for Canada goose, mallard and muskrat. Forested wetland provides 10.97 HUs for bald eagle, black-capped chickadee, mallard and white-tailed deer. Conifer forest habitat provides 203.34 HUs for bald eagle, black-capped chickadee, mallard, and white-tailed deer. The objective of using HEP at the North Eaton Lake Project and other protected properties is to document the quality and quantity of available habitat for selected wildlife species. In this way, HEP provides information on the relative value of the same area at future points in time so that the effect of management activities on wildlife habitat can be quantified. When combined with other tools, the baseline HEP will be used to determine the most effective on-site management, restoration, and enhancement actions to increase habitat suitability for targeted species. The same process will be replicated every five years to quantitatively evaluate the effectiveness of management strategies in improving and maintaining habitat conditions while providing additional crediting to BPA for enhanced habitat values.

  17. Inhibition of energy-producing pathways of HepG2 cells by 3-bromopyruvate.

    Science.gov (United States)

    Pereira da Silva, Ana Paula; El-Bacha, Tatiana; Kyaw, Nattascha; dos Santos, Reinaldo Sousa; da-Silva, Wagner Seixas; Almeida, Fabio C L; Da Poian, Andrea T; Galina, Antonio

    2009-02-01

    3-BrPA (3-bromopyruvate) is an alkylating agent with anti-tumoral activity on hepatocellular carcinoma. This compound inhibits cellular ATP production owing to its action on glycolysis and oxidative phosphorylation; however, the specific metabolic steps and mechanisms of 3-BrPA action in human hepatocellular carcinomas, particularly its effects on mitochondrial energetics, are poorly understood. In the present study it was found that incubation of HepG2 cells with a low concentration of 3-BrPA for a short period (150 microM for 30 min) significantly affected both glycolysis and mitochondrial respiratory functions. The activity of mitochondrial hexokinase was not inhibited by 150 microM 3-BrPA, but this concentration caused more than 70% inhibition of GAPDH (glyceraldehyde-3-phosphate dehydrogenase) and 3-phosphoglycerate kinase activities. Additionally, 3-BrPA treatment significantly impaired lactate production by HepG2 cells, even when glucose was withdrawn from the incubation medium. Oxygen consumption of HepG2 cells supported by either pyruvate/malate or succinate was inhibited when cells were pre-incubated with 3-BrPA in glucose-free medium. On the other hand, when cells were pre-incubated in glucose-supplemented medium, oxygen consumption was affected only when succinate was used as the oxidizable substrate. An increase in oligomycin-independent respiration was observed in HepG2 cells treated with 3-BrPA only when incubated in glucose-supplemented medium, indicating that 3-BrPA induces mitochondrial proton leakage as well as blocking the electron transport system. The activity of succinate dehydrogenase was inhibited by 70% by 3-BrPA treatment. These results suggest that the combined action of 3-BrPA on succinate dehydrogenase and on glycolysis, inhibiting steps downstream of the phosphorylation of glucose, play an important role in HepG2 cell death.

  18. High-order statistics of microtexton for HEp-2 staining pattern classification.

    Science.gov (United States)

    Han, Xian-Hua; Wang, Jian; Xu, Gang; Chen, Yen-Wei

    2014-08-01

    This study addresses the classification problem of the HEp-2 cell using indirect immunofluorescent (IIF) image analysis, which can indicate the presence of autoimmune diseases by finding antibodies in the patient serum. Generally, the method used for IIF analysis remains subjective, and depends too heavily on the experience and expertise of the physician. Recently, studies have shown that it is possible to identify the cell patterns using IIF image analysis and machine learning techniques. However, it still has large gap in recognition rates to the physical experts' one. This paper explores an approach in which the discriminative features of HEp-2 cell images in IIF are extracted and then, the patterns of the HEp-2 cell are identified using machine learning techniques. Motivated by the progress in the research field of computer vision, as a result of which small local pixel pattern distributions can now be highly discriminative, the proposed strategy employs a parametric probability process to model local image patches (textons: microstructures in the cell image) and extract the higher-order statistics of the model parameters for the image description. The proposed strategy can adaptively characterize the microtexton space of HEp-2 cell images as a generative probability model, and discover the parameters that yield a better fitting of the training space, which would lead to a more discriminant representation for the cell image. The simple linear support vector machine is used for cell pattern identification because of its low computational cost, in particular for large-scale datasets. Experiments using the open HEp-2 cell dataset used in the ICIP2013 contest validate that the proposed strategy can achieve a much better performance than the widely used local binary pattern (LBP) histogram and its extensions, rotation invariant co-occurrence LBP, and pairwise rotation invariant co-occurrence LBP, and that the achieved recognition error rate is even very

  19. Cytotoxic and antimigratory effects of Cratoxy formosum extract against HepG2 liver cancer cells.

    Science.gov (United States)

    Buranrat, Benjaporn; Mairuae, Nootchanat; Kanchanarach, Watchara

    2017-04-01

    The aim of the present study was to investigate the molecular mechanisms underlying Cratoxylum formosum (CF) Dyer-induced cancer cell death and antimigratory effects in HepG2 liver cancer cells. The cytotoxic, antiproliferative and antimigratory effects of CF leaf extract on human liver cancer HepG2 cell lines were evaluated using sulforhodamine B, colony formation, and wound healing assays. In addition, apoptosis induction mechanisms were investigated via reactive oxygen species (ROS) formation, caspase 3 activities, and mitochondrial membrane potential (ΔΨm) disruption. Gene expression and apoptosis-associated protein levels were measured by reverse transcription-quantitative polymerase chain reaction and western blotting. CF induced HepG2 cell death in a time- and dose-dependent manner with half maximal inhibitory concentration values of 219.03±9.96 and 124.90±6.86 µg/ml at 24 and 48 h, respectively. Treatment with CF caused a significant and dose-dependent decrease in colony forming ability and cell migration. Furthermore, the present study demonstrated that CF induced ROS formation, increased caspase 3 activities, decreased the ΔΨm, and caused HepG2 apoptosis. CF marginally decreased the expression level of the cell cycle regulatory protein, ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) and the downstream protein, cyclin dependent kinase 6. Additionally, CF significantly enhanced p21 levels, reduced cyclin D1 protein levels and triggered cancer cell death. CF leaf extracts induced cell death, stimulated apoptosis and inhibited migration in HepG2 cells. Thus, CF may be useful for developing an anticancer drug candidate for the treatment of liver cancer.

  20. Relación entre encefalopatía hepática, calidad de vida y proteínas de la dieta en pacientes con cirrosis hepática

    OpenAIRE

    Les Bujanda, Íñigo

    2011-01-01

    La encefalopatía hepática es una complicación mayor de la cirrosis que se asocia a un peor pronóstico y a una peor calidad de vida relacionada con la salud (CVRS). Los trabajos previos que han investigado la CVRS en la cirrosis adolecen de una serie de limitaciones metodológicas. Faltan estudios que evalúen la influencia de la encefalopatía hepática sobre la CVRS, y que combinen cuestionarios genéricos y específicos de enfermedad hepática. En la primera parte de esta tesis, el objetivo es des...

  1. Relación entre encefalopatía hepática, calidad de vida y proteínas de la dieta en pacientes con cirrosis hepática

    OpenAIRE

    Les Bujanda, Íñigo

    2012-01-01

    La encefalopatía hepática es una complicación mayor de la cirrosis que se asocia a un peor pronóstico y a una peor calidad de vida relacionada con la salud (CVRS). Los trabajos previos que han investigado la CVRS en la cirrosis adolecen de una serie de limitaciones metodológicas. Faltan estudios que evalúen la influencia de la encefalopatía hepática sobre la CVRS, y que combinen cuestionarios genéricos y específicos de enfermedad hepática. En la primera parte de esta tesis, el objetivo es des...

  2. Endocytosis and exocytosis of gold nanochain attaching Hep-2 cells of human laryngeal carcinoma%金纳米链与人喉癌Hep-2细胞共培养自由进出细胞的形式

    Institute of Scientific and Technical Information of China (English)

    丛林海; 何晓光; 杨一兵; 张世文; 彭淑昆

    2012-01-01

    BACKGROUND: The gold nanoparticles have a killing effect on tumor cells.OBJECTIVE: To investigate the influence of gold nanochain on Hep-2 cells proliferation of human laryngeal carcinoma.METHODS: The gold nanochain was prepared by a glucose synthesis method and added into the culture cells with different concentrations (10%, 25%, 50%, 75%, 95%) to test the influence on proliferation of in vitro cultured Hep-2 cells. The endocytosis and exocytosis of transmembrane when gold nanochain attached to Hep-2 cells were observed by electron microscopy.RESULTS AND CONCLUSION: The gold chain at high concentrations (75%, 95%) exhibited inhibitory effects on the proliferation of Hep-2 cells, but the influence was not increased with increasing concentration, belonging to a range of non-toxic. Gold nanchain can enter into Hep-2 cells after 8 hours of co-culture and leave cells after 48 hours, indicating gold nanoparticles chain can enter and leave Hep-2 freely.%背景 金纳米颗粒对肿瘤细胞具有杀伤效应.目的 观察金纳米链对人喉癌Hep-2 细胞增殖的影响.方法 首先运用葡萄糖体系合成法制备金纳米链溶胶,然后MTT 法检测不同终浓度(10%,25%,50%,75%,95%)金纳米链溶胶对人喉癌Hep-2 细胞增殖的影响,并通过电镜观察金纳米链进出Hep-2 细胞的过程.结果 与结论 金纳米链在75%和95%高浓度时对Hep-2 细胞增殖有一定的抑制,但并没有随着浓度的增加而加重,均属于一级范围,表明金纳米链对人喉癌Hep-2 细胞无毒性.金纳米链在与Hep-2 细胞共培养8 h 后即能以胞吞的方式进入细胞,48 h 后大部分出胞,能够自由进出细胞.

  3. Estrogen receptor alpha augments changes in hemostatic gene expression in HepG2 cells treated with estradiol and phytoestrogens.

    Science.gov (United States)

    Kelly, Lynne A; Seidlova-Wuttke, Dana; Wuttke, Wolfgang; O'Leary, John J; Norris, Lucy A

    2014-01-15

    Phytoestrogens are popular alternatives to estrogen therapy however their effects on hemostasis in post-menopausal women are unknown. The aim of this study was to determine the effect of the phytoestrogens, genistein, daidzein and equol on the expression of key genes from the hemostatic system in human hepatocyte cell models and to determine the role of estrogen receptors in mediating any response seen. HepG2 cells and Hep89 cells (expressing estrogen receptor alpha (ERα)) were incubated for 24 h with 50 nM 17β-estradiol, genistein, daidzein or equol. Tissue plasminogen activator (tPA), plasminogen activator inhibitor-1 (PAI-1), Factor VII, fibrinogen γ, protein C and protein S mRNA expression were determined using TaqMan PCR. Genistein and equol increased tPA and PAI-1 expression in Hep89 cells with fold changes greater than those observed for estradiol. In HepG2 cells (which do not express ERα), PAI-1 and tPA expression were unchanged. Increased expression of Factor VII was observed in phytoestrogen treated Hep89 cells but not in similarly treated HepG2s. Prothrombin gene expression was increased in equol and daidzein treated HepG2 cells in the absence of the classical estrogen receptors. These data suggest that phytoestrogens can regulate the expression of coagulation and fibrinolytic genes in a human hepatocyte cell line; an effect which is augmented by ERα.

  4. [The research of apoptosis and proliferation inhibition of human laryngeal carcinoma cell line Hep-2 induced by Genistein].

    Science.gov (United States)

    Xi, Panpan; Zhang, Shuxiang

    2015-04-01

    To investigate the effect of genistein on cell proliferation and apoptosis in human laryngeal carcinoma cell line Hep-2. Cell Counting Kit-8 (CCK-8) assay was used to measure the 50% inhibiting concentration (IC50) value of genistein; cell apoptosis rate and the distribution changes of cell cycle were determined with flow cytometry assay after treatment by gensitein. The morphological changes of tumor cells were evaluated by inverted phase contrast mircroscopy. The IC50 of geniste responses to Hep-2 cells for 24 h was 23.64 µg/ml. The apoptotic rates of Hep-2 cells treated by genistein for 24 h were 22.40% ± 1. 65% (at 12 µg/ml genistein) and 30.64% ± 2.94% (at 24 µg/ml genistein) respectively, significantly statistical differences were foundbetween above threated groups and the control group (P Hep-2 cells treated by genistein for 48 h were 30.55% ± 0.72%(at 12 µg/ml genistein) and 48.69% ± 1.06% (at 24 µg/ml genistein) respectively, significantly statistical differences were found between above threated groups and the control group (P Hep-2 cells exposed to the same concentration of genistein for 24 h, 48 h respectively, the difference in apoptotic rate was statistically significant. Genistein inhibited Hep-2 cells growth obviously, meanwhile it could induced apoptosis of Hep-2 cells, the apoptotic rate was increasing with the increase of the time and dose of genistein.

  5. The Research of Memory Performance in Multiprocessor System%多处理器系统内存读写效率研究

    Institute of Scientific and Technical Information of China (English)

    张斯伟

    2012-01-01

      According to the analysis of memory hierarchy structure, there are new problems when single processor system be⁃come Multiprocessor system, one of which is synchronization-base Cache coherence problem. Therefore, when Multithreaded programs do read and write operation with the shared memory, the missing of cache and the inconsistency of data in multiproces⁃sor system will affect the memory performance. Base on this problem, This paper designs a memory performance test method named multithread memory latency of read and write. According to the experimental results, the paper point out it will improve the performance of share memory that the threads which access the same shared memory bind to the same processor. According to this result, several suggestions are proposed for how to improve the performance of the parallel programs.%  通过分析存储器的层次结构,引出了从单处理器系统到多处理器系统存储器层次结构的新问题,即高速缓存一致性的问题。因此,在多线程同时对共享内存进行读写操作时,Cache缺失和多处理器数据不一致会带来的相应的内存读写性能损耗。该文基于这个问题,设计了面向多线程内存读写延时的内存读写效率的测试方法。并通过的实验,指出了绑定同一个处理器,会使得对共享内存数据访问的效率提高。并基于这个测试结果给出了对并行程序的优化建议。

  6. 一种多处理器异构系统设计与实现%Design and Implementation of a Heterogeneous Multi-Processor System

    Institute of Scientific and Technical Information of China (English)

    刘品阳

    2011-01-01

    Embedded system integrated application, operating system and computer hardware. Currently rely solely on improving processor performance, to improve the system of real time has been unable to meet the needs of data processing of embedded system. Present a new architecture, the use of heterogeneous multi-processor to ensure real-time, parallel processing technology to improve the system, the use of redundancy to improve reliability. System used in the design of domestic processors, dual redundant hot backup and dynamic technologies, some of the requirements of high reliability, fast areas of real-time control is important.%嵌入式系统是将应用程序和操作系统与计算机硬件集成在一起的系统,目前对嵌入式系统数据处理需求在不断提高,单纯依靠提高处理器的性能,来提高系统的实时性已经无法满足.提出了一种新的架构,在系统中使异构多处理器来保证实时性,采用并行技术,同样有助于提高系统的处理能力,再加上系统采用冗余备份,有助于提高可靠性,在设计中采用国产处理器,双机冗余备份及存储系统,动态热备份技术,对要求可靠性高、速度快的实时控制领域具有重要意义.

  7. 3-dimensional magnetotelluric inversion including topography using deformed hexahedral edge finite elements and direct solvers parallelized on symmetric multiprocessor computers - Part II: direct data-space inverse solution

    Science.gov (United States)

    Kordy, M.; Wannamaker, P.; Maris, V.; Cherkaev, E.; Hill, G.

    2016-01-01

    Following the creation described in Part I of a deformable edge finite-element simulator for 3-D magnetotelluric (MT) responses using direct solvers, in Part II we develop an algorithm named HexMT for 3-D regularized inversion of MT data including topography. Direct solvers parallelized on large-RAM, symmetric multiprocessor (SMP) workstations are used also for the Gauss-Newton model update. By exploiting the data-space approach, the computational cost of the model update becomes much less in both time and computer memory than the cost of the forward simulation. In order to regularize using the second norm of the gradient, we factor the matrix related to the regularization term and apply its inverse to the Jacobian, which is done using the MKL PARDISO library. For dense matrix multiplication and factorization related to the model update, we use the PLASMA library which shows very good scalability across processor cores. A synthetic test inversion using a simple hill model shows that including topography can be important; in this case depression of the electric field by the hill can cause false conductors at depth or mask the presence of resistive structure. With a simple model of two buried bricks, a uniform spatial weighting for the norm of model smoothing recovered more accurate locations for the tomographic images compared to weightings which were a function of parameter Jacobians. We implement joint inversion for static distortion matrices tested using the Dublin secret model 2, for which we are able to reduce nRMS to ˜1.1 while avoiding oscillatory convergence. Finally we test the code on field data by inverting full impedance and tipper MT responses collected around Mount St Helens in the Cascade volcanic chain. Among several prominent structures, the north-south trending, eruption-controlling shear zone is clearly imaged in the inversion.

  8. Selective effects of a fiber chimeric conditionally replicative adenovirus armed with hep27 gene on renal cancer cell.

    Science.gov (United States)

    Fang, Lin; Cheng, Qian; Liu, Wenshun; Zhang, Jie; Ge, Yan; Zhang, Qi; Li, Liantao; Liu, Junjie; Zheng, Junnian

    2016-06-02

    ASBTARCT Adenoviruses mediated cancer gene therapies are widely investigated and show a promising effect on cancer treatment. However, efficient gene transfer varies among different cancer cell lines based on the expression of coxsakie adenovirus receptor (CAR). Hep27, a member of dehydrogenase/reductase (SDR) family, can bind to Mdm2, resulting in the attenuation of Mdm2-mediated p53 degradation. Here we constructed a fiber chimeric adenovirus carrying hep27 gene (F5/35-ZD55-Hep27), in which the fiber protein of 5-serotype adenovirus (Ad5) was substituted by that of 35-serotype adenovirus (Ad35), aiming to facilitate the infection for renal cancer cells and develop the role of hep27 in cancer therapy. We evaluated the CAR and CD46 (a membrane cofactor protein for Ad35) expression in four kinds of renal cancer cells and assessed the relationship between receptors and infection efficiency. 5/35 fiber-modified adenovirus had a much promising infectivity compared with Ad5-based vector in renal cancer cells. F5/35-ZD55-Hep27 had enhanced antitumor activity against human renal cancer cells compared to the other groups. Further, hep27 mediated p53 and cleaved-PARP upregulation and mdm2 downregulation was involved and caused increased apoptosis. Moreover, F5/35-ZD55-Hep27 significantly suppressed tumor growth in subcutaneous renal cancer cell xenograft models. Our data demonstrated that 5/35 fiber-modified adenovirus F5/35-ZD55-Hep27 transferred into renal cancers efficiently and increased p53 to induce cancer cell apoptosis. Thus 5/35 fiber-modified adenoviral vector F5/35-ZD55-Hep27 might a promising vector and antitumor reagent for renal cancer gene therapy.

  9. Transfection, overexpression and clinical application of human 60 kDa Ro/SSA autoantigens in HEp-2 cells

    Institute of Scientific and Technical Information of China (English)

    吕良敬; 陈顺乐; 顾越英; 沈南; 鲍春德; 王元; 薛峰; 叶萍; 俞翀曌

    2003-01-01

    Objective To develop an improved substrate for indirect immunofluorescence test (IIF) for detecting anti-Ro60/Sjogren's syndrome A (Ro/SSA) autoantibodies.Methods 60-kDa Ro/SSA autoantigens (Ro60) cDNAs were obtained from human placental cDNA library using polymerase chain reaction (PCR) and were cloned into the mammalian expression vector-pEGFP-C1. Then, the recombinant plasmids were transfected into HEp-2 cells. We confirmed the overexpression, localization and antigenicity of fusion proteins in transfected cells by means of immunoblotting, confocal fluorescence microscopy and IIF. HEp-2 and HEp-Ro60 were analyzed by IIF using a panel of 10 precipitin-positive anti-Ro human sera simultaneously.Results Stable expression of Ro60-green fluorescent protein (Ro60-GFP) fusion proteins were maintained ten more generations. Ro60-GFP kept the antigenicity of Ro while demonstrating its own characteristic immunofluorescent pattern in HEp-Ro60 cells. The transfectants dramatically increased the sensitivity of IIF testing (a mean increase of 6.7-fold in endpoint titer). Eight overten (8/10) positive anti-Ro sera showed characteristic immunofluorescent patterns for HEp-Ro60, including two sera that were anti-nuclear antibodies (ANA) negative for untransfected HEp-2. IIF-ANA in all healthy sera was negative for HEp-Ro60. Conclusions As a new substrate for IIF, the Ro60 transfectants can be used to detect anti-Ro antibodies. In addition, transfected HEp-2 cells keep the immunofluorescent properties of HEp-2 cells in IIF-ANA tests and can be employed as a substrate for routine IIF-ANA detection.

  10. Evaluation of the KEMRI Hep-cell II test kit for detection of hepatitis B surface antigens in Tanzania.

    Science.gov (United States)

    Kilale, Andrew M; Range, Nyagosya S; Ngowi, Prosper H; Kahwa, Amos M; Mfinanga, Sayoki G

    2012-07-01

    Hepatitis B surface antigen (HBsAg) is one of the most important serological markers used to diagnose acute and chronic hepatitis B infection. The objective of the current evaluation was to assess the operational characteristics of the Kenya Medical Research Institute (KEMRI) Hep-cell II against an ELISA Exsym HBsAg in the detection of hepatitis B surface antigens. To evaluate the Hep-cell II test, blood samples were collected from blood donors and processed for detection of HBsAg using Hep-cell II based on the test principle and procedure outlined by the manufacturer. ELISA Axsym HBsAg test was used as golden standard. Of the 400 samples tested, 287 (71.8%) were positive by Hep-cell test and 295 (73.8%) were positive by the ELISAAxsym. Hep-cell test had a sensitivity of 98.6% and specificity of 95.96%. Similar values of sensitivity and specificity of the Hep-cell test were obtained even when Bayesian Analysis Model was applied. The positive and negative predictive values of Hep-cell test were 98.61% and 95.96%, respectively. The positive and negative diagnostic likelihood ratios of Hep-cell test were 24.4% and 0.0145, respectively. In conclusion, the Hep-cell test is useful for detecting hepatitis B virus and the high likelihood ratio observed suggests that it may be useful in blood screening. However, it may be necessary to evaluate for cost-effectiveness and robustness in field conditions before the test is recommended for use.

  11. Differential expression of several drug transporter genes in HepG2 and Huh-7 cell lines.

    Science.gov (United States)

    Louisa, Melva; Suyatna, Frans D; Wanandi, Septelia Inawati; Asih, Puji Budi Setia; Syafruddin, Din

    2016-01-01

    Cell culture techniques have many advantages for investigation of drug transport to target organ like liver. HepG2 and Huh-7 are two cell lines available from hepatoma that can be used as a model for hepatic drug transport. The present study is aimed to analyze the expression level of several drug transporter genes in two hepatoma cell lines, HepG2 and Huh-7 and their response to inhibitors. This is an in vitro study using HepG2 and Huh-7 cells. The expression level of the following drug transporter genes was quantified: P-glycoprotein/multidrug resistance protein 1, Organic Anionic Transporter Protein 1B1 (OATP1B1) and Organic Cationic Transporter-1 (OCT1). Ribonucleic acid was extracted from the cells using Tripure isolation reagent, then gene expression level of the transporters is quantified using Applied Biosystems quantitative reverse transcriptase polymerase chain reaction. Verapamil (P-glycoprotein inhibitor), nelfinavir (OATP1B1 inhibitor), quinidine (OCT1 inhibitor) were used to differentiate the inhibitory properties of these agents to the transporter expressions in HepG2 and Huh-7 cells. Huh-7 shows a higher level of P-glycoprotein, OATP1B1 and OCT1 expressions compared with those of HepG2. Verapamil reduces the expressions of P-glycoprotein in HepG2 and Huh-7; nelfinavir reduces the expression of OATP1B1 in HepG2 and Huh-7; while quinidine reduces the OCT1 gene expressions in HepG2, but not in Huh-7 cells. This study indicates that HepG2 might be a more suitable in vitro model than Huh-7 to study drug transport in hepatocytes involving drug transporters.

  12. Lipidosis hepática asociada con malnutrición y preñez en dos perras

    OpenAIRE

    2004-01-01

    En algunos países latinoamericanos se observó que la ascites ocurre en diferentes momentos post parto en perras alimentadas con dietas hipoproteicas. El objetivo de este articulo fue describir 2 casos de perras con ascitis asociada a lipidosis hepática desarrollada después del parto. Las muestras de sangre evidenciaron anormarmalidades compatibles con enfermedad hepática. La paracentesis abdominal reveló un trasudado aséptico y la ultrasonografía hiperecogenicidad hepática. Se arribó al diagn...

  13. Alteraciones del ritmo del sueño en modelos animales de encefalopatia hepática

    OpenAIRE

    Peñaranda Sarmiento, Nicolas

    2016-01-01

    Introducción: La encefalopatía hepática (EH) es un síndrome neuropsiquiátrico presente en pacientes con enfermedades hepáticas que conduce a diferentes alteraciones neurológicas que pueden llevar al coma y la muerte. Dentro de las manifestaciones neurológicas precoces de la enfermedad, están las alteraciones del sueño con una prevalencia casi del 50% en pacientes con cirrosis hepática sin evidencia clínica. En la actualidad, varios grupos de investigación han demostrado que el ...

  14. Coccidiosis hepática en el conejo: aspectos ambientales y clínico-patológicos

    OpenAIRE

    Mario Pérez Martínez; Miguel Angel Betancourt Alonso

    2011-01-01

    La cunicultura es una industria creciente en México. De las 13 especies de coccidias que afectan a los conejos, la Eimeria stiedae es el principal agente causal de la coccidiosis hepática en el conejo. En la presente revisión se aborda la importancia del medio ambiente y aspectos clínico- patológicos de la coccidiosis hepática en conejos. Como resultado de la revisión de la literatura disponible se observa la necesidad de abordar el estudio de la coccidiosis hepática del conejo de manera inte...

  15. I Consenso Nacional para Padronização dos Laudos de FAN HEp-2 The first Brazilian Consensus for Standardization of ANA in HEp-2 Cells

    Directory of Open Access Journals (Sweden)

    Alessandra Dellavance

    2002-07-01

    Full Text Available A análise da presença de auto-anticorpos feita por imunofluorescência indireta em células HEp-2 constitui-se em um método de triagem escolhido na maioria dos laboratórios clínicos. A ausência de uma nomenclatura definida para a descrição dos laudos tem trazido problemas na utilização clínica do teste, pelas dificuldades no controle de qualidade e na padronização dos resultados, que, por sua vez, embora similares, recebiam denominações diferentes. O I Consenso Brasileiro para Padronização dos Laudos de FAN HEp-2 reuniu em agosto de 2000, em Goiânia, diversos especialistas de todo o Brasil. Esses emitiram pareceres em consenso para os distintos padrões: nucleares, nucleolares, citoplasmáticos e aparelho mitótico. Foram feitas recomendações sobre os critérios para a leitura de uma lâmina, bem como para relação entre a diluição de triagem e o sistema óptico utilizado.The technique of immunofluorescence using HEp-2 cells as substrate is the screening method of choice for the presence of autoantibodies in many clinical laboratories. The lack of a specific terminology for reporting results brings problems in quality control, clinical utility of the test, and standardization attempts. The first Brazilian Consensus for Standardization of ANA in HEp-2 Cells took place in Goiânia in August 2000. Several laboratory specialists with experience in the methodology showed up. They established guidelines for the description of ANA patterns in the Portuguese language, encompassing distinct descriptions for nuclear, nucleolar, cytoplasmic and mitotic apparatus patterns of fluorescence. Recommendations were also established regarding screening titers, final dilution titer, and on morphological criteria for reading the slides.

  16. 龙葵碱对人肝癌HepG2细胞N-乙酰基转移酶活性的影响%Effect of solanine on N-acetyltransferase activity in HepG2 cell

    Institute of Scientific and Technical Information of China (English)

    高世勇; 季字彬

    2008-01-01

    目的 探讨龙葵碱对HepG2细胞Ⅳ-乙酰基转移酶(NAT)活性的影响.方法 采用HPLC方法,以2-氨基芴(2-AF)为底物,以2-AF被NAT乙酰化为2-乙酰氨基芴(2-AAF)的量来反应NAT的活性.结果 龙葵碱能显著降低HepG2完整细胞NAT的活性;龙葵碱能够降低HepG2细胞质内NAT的活性,作用具有剂量依赖性.结论 龙葵碱通过抑制HepG2细胞NAT的活性发挥细胞毒作用.

  17. [Apoptosis mechanism of taxol combined with resveratrol on human laryngeal carcinoma Hep-2 cells].

    Science.gov (United States)

    Lu, Chen-Xin; Sun, Jing-Hui; Wu, Chun-Lian

    2016-02-01

    Laryngeal cancer is one of the most common malignant tumors in the respiratory tumors, and its incidence ranks second highest in the respiratory tumors. Resveratrol (Res) is a kind of polyphenols, which can inhibit nucleotides can inhibit the growth of liver cancer cells, gastric cancer cells, pancreatic cells and other tumor cells by inhibiting ribonucleotide reductase in the cells. Taxol (Tax) is a kind of secondary metabolites of Taxus chinensis, which has anti-tumor activity for breast cancer, cervical cancer, ovarian cancer and other tumors by inhibiting cellular microtubule depolymerization. But at present the effects of resveratrol combined with taxol on human laryngeal carcinoma cell strain Hep-2 and their underlying molecular mechanisms are rarely reported. After human laryngeal cancer cell Hep-2 cells were processed with resveratrol (Res) and taxol (Tax), CCK-8 assay was used to evaluate the effect of these two herbs on the proliferation of cancer cells; AO/PI staining and JC-1 were used to detect Hep-1 cells apoptosis; the expression of Bax, Bcl-2, PARP, TRIB3, and XIAP genes was detected by real time quantitative PCR; the activity of caspase-3 and caspase-8 was determined with quantitative fluorescence method. The experimental results showed that compared with Tax, Res medication alone, joint group significantly enhanced inhibition of Hep-2 cells activity, decreased the dosage of Tax, increased the expression of Bax and PARP, TRIB3, reduced the expression of the Bcl-2 and XIAP, and promoted the activity of caspase-3 and caspase-8. The test results showed that compared with the single medication, combined group could significantly increase the inhibitory effect on Hep-2 cells, significantly reduce Tax dosage, increase expressions of Bax, PARP, TRIB3, reduce expressions of Bcl-2, XIAP, and promote activity of caspase-3, caspase-8. This indicated apoptosis of human laryngeal carcinoma cell strain Hep-2 may be induced with Res, Tax, and the combination of

  18. Effect of shikonin on multidrug resistance in HepG2: The role of SIRT1.

    Science.gov (United States)

    Jin, Yong-Dong; Ren, Yi; Wu, Ming-Wei; Chen, Ping; Lu, Jin

    2015-07-01

    Overexpression of SIRT1 is considered to enhance the resistance of HepG2 cells to irradiation. Shikonin, a naturally occurring naphthoquinone compound, displays anticancer effects and circumvents cancer drug resistance. This study investigated the MDR reversal effect of shikonin induced by the overexpression of SIRT1. The overexpression of SIRT1 in HepG2 cells was established by lentivirus infection. Five days after transduction, real-time quantitative polymerase chain reaction and western blotting were used to detect the expression of SIRT1 and MDR1/P-gp. Drug resistance was also evaluated by flow cytometry after rhodamine-123 staining. On day 5, the multidrug resistance cells were treated by shikonin (10(-7), 10(-6), and 10(-5) µmol/L) one time. The cell viability was detected by the MTT assay, and apoptosis was evaluated by Hoechst 33342 staining and caspase-3 activity 24 h after shikonin treatment. Overexpression of SIRT1 decreased rhodamine-123 staining and successfully produced the R-HepG2 cell line. Compared with HepG2, the expression of MDR1/P-gp mRNA (3.45 ± 0.35) and protein (1.40 ± 0.05) were both upregulated in R-HepG2. Shikonin inhibited cell viability (from 93.9 ± 2.1 to 66.7 ± 1.5%), induced apoptosis of R-HepG2 (apoptotic ratio from 3.5 ± 0.8 to 47.5 ± 2.7%, caspase-3 activity from 103.5 ± 1.9 to 329.2 ± 14.9%, respectively), downregulated the mRNA and protein expression of SIRT1 and MDR1/P-gp, and decreased rhodamin 123 efflux. In the present study, we demonstrated that shikonin is able to overcome drug resistance in hepatocellular carcinoma cells, and the mechanism is related to the SIRT1-MDR1/P-gp signaling pathway.

  19. THE EFFECTS OF 3-BROMOPYRUVATE ON THE PROLIFERATION AND APOPTOSIS IN HepG-2 CELL LINE%3-溴丙酮酸对人肝癌HepG-2细胞增殖和凋亡的影响

    Institute of Scientific and Technical Information of China (English)

    张海丽; 曾常茜; 郑学仿

    2010-01-01

    目的:通过3-溴丙酮酸作用于HepG-2细胞,观察3-溴丙酮酸对HepG-2细胞增殖和凋亡的影响.方法:MTT法检测细胞增殖,倒置显微镜和透射电镜观察细胞形态,流式细胞术检测细胞周期分布和细胞凋亡.结果:3-溴丙酮酸在25~75 μg/mL范围内,对HepG-2细胞的增殖具有明显的抑制作用并呈现剂量依赖性.3-溴丙酮酸处理HepG-2细胞后,倒置显微镜观察到细胞生长稀疏,细胞质透亮度下降,细胞脱落增多;透射电镜观察到染色质固缩、边集,核质内可见空泡.流式细胞术结果显示3-溴丙酮酸可将HepG-2细胞阻滞于S期,且DNA直方图上可见亚二倍体峰.在3.125~25 μg/mL范围内,3-溴丙酮酸可剂量依赖性的诱导HepG-2细胞凋亡.结论:3-溴丙酮酸抑制HepG-2增殖并诱导HepG-2凋亡.

  20. [From the national competence network for viral hepatitis (HepNet) emerged the German Liver Foundation (Deutsche Leberstiftung)].

    Science.gov (United States)

    Hardtke, S; Wiebner, B; Manns, M P

    2016-04-01

    The competence network for viral hepatitis (HepNet) was founded in 2002 with funding from the German government and has influenced the research on viral hepatitis in Germany. HepNet collaborator sites have been involved in numerous national and international investigator-initiated, as well as industry-sponsored, phase 1-3 studies. Within the HepNet Study-House, many groundbreaking investor-initiated trials have been completed and are still ongoing. For example, the acute hepatitis C trials and trials on chronic hepatitis D (delta), which led to therapy optimization. Continuation of the competence network on viral hepatitis has been achieved by the foundation of the German Liver Foundation, which has been an external cooperation partner of the German Center for Infection Research (DZIF) for two years. The well-established HepNet Study-House acts here as the clinical trial platform for all DZIF hepatitis trials.

  1. [State Comments on U.S. Fish and Wildlife's Application of Habitat Evaluation Procedures (HEP) at the Rocky Mountain Arsenal

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — A memorandum prefaces the State of Colorado's comments on the U.S. Fish and Wildlife's Application Habitat Evaluation Procedures (HEP) at the Rocky Mountain Arsenal....

  2. Diagnostic profile on the IFA 40: HEp-20-10 - an immunofluorescence test for reliable antinuclear antibody screening.

    Science.gov (United States)

    Rohwäder, Edda; Locke, Michael; Fraune, Johanna; Fechner, Kai

    2015-04-01

    Indirect immunofluorescence assay is the recommended gold standard to test for antinuclear antibodies (ANA), which are important biomarkers for systemic rheumatic autoimmune diseases. It is internationally accepted that indirect immunofluorescence assay ANA screening is most sensitive on human epithelial (HEp-2) cells. The cells present a multitude of antigens that display distinguishable localization patterns in interphase and mitotic cells in indirect immunofluorescence analysis. Here, we present the IFA 40: HEp-20-10 test kit (Euroimmun AG, Lübeck, Germany), which is cleared for sale on the US market by the FDA. The test has been designed for qualitative and semiquantitative screening of ANA in human sera. It uses the commonly applied 1:40 cutoff dilution and the enhanced HEp-20-10 cell line for more efficient pattern recognition and has been validated in various studies and by method comparison. The IFA 40: HEp-20-10 test fulfills the essential criteria for reliable application in autoimmune diagnostics.

  3. Study of anticancer activity of quercetin and expression of PDGFR- βin HepG2 cells%Quercetin对HepG2细胞的抑制作用及PDGFR-β的表达

    Institute of Scientific and Technical Information of China (English)

    单智焱; 刘慧雯

    2005-01-01

    目的探讨植物化学物质槲皮素(Quercetin)对人类肝癌细胞HepG2的抑制作用和血小板衍生生长因子β受体(PDGFR-β)表达的关系.方法采用免疫组化SABC法观察Quercetin抑制HepG2中PDGFR-β表达,并采用透射电镜观察Quercetin作用后HepG2细胞的凋亡情况.结果细胞增殖率检测表明Quercetin可以抑制HepG2细胞的增殖,且呈剂量依赖性;Quercetin可以抑制HepG2细胞PDGFR-β的表达,且呈剂量依赖性;透射电镜下可见凋亡小体.结论槲皮素对HepG2细胞增殖有明显抑制作用,其机制可能是诱导PDGFR-β的增加,再通过PDGFR-β介导的细胞内信号体系控制细胞凋亡而实现的.

  4. Expression, localization and clinical application of exogenous Smith proteins D1 in gene transfected HEp-2 cells.

    Science.gov (United States)

    Wang, Su-li; Wang, Fang-fang; Chen, Shun-le; Shen, Nan; Xue, Feng; Ye, Ping; Bao, Chun-de; Gu, Yue-ying; Yu, Chong-zhao; Wilson, Alisa; Wallace, Daniel J; Weisman, Michael H; Lu, Liang-jing

    2013-06-01

    To establish an improved substrate for an indirect immunofluorescence test (IIF) to detect anti-Sm antibody. Full-length Smith protein D1(Sm-D1) complementary DNA was obtained from human larynx carcinoma cell line HEp-2 by reverse transcription - polymerase chain reaction (RT-PCR) and cloned into the mammalian expression vector pEGFP-C1. The recombinant plasmid pEGFP-Sm-D1 was transfected into HEp-2 cells. The expression, localization and antigenicity of fusion proteins of green fluorescent protein (GFP) in transfected cells were confirmed by means of immunoblotting (IBT), confocal fluorescence microscopy and IIF analysis. Transfected HEp-2 cells were analyzed with reference serum and compared with untransfected HEp-2 cells by IIF. Stable expression of the Sm-D1-GFP was maintained for more than ten generations. This Sm-D1-GFP showed the antigenicity of Sm-D1 with a characteristic phenotype in IIF.Six of 12 serum specimens from systemic lupus erythematosus contained both 29/28 and 13.5 kDa proteins and showed characteristic immunofluorescent patterns. The same phenomenon appeared in 3/6 serum samples which contained 29/28 kDa proteins only. Sera from 10 healthy donors did not react with HEp-Sm-D1 or HEp-2 at 1:80 attenuant degrees. No alteration in expression, localization and morphology was observed when HEp-Sm-D1 or HEp-2 interacted with the reference sera which could react with Ro/SSA, La/SSB, β2GP1, centromere, histone, and Scl-70 antibodies in routine IIF tests. As a new kind of substrate of IIF, HEp-Sm-D1 can be used to detect anti-Sm antibodies. Transfected HEp-2 cells keep the immunofluorescent property of HEp-2 cells in immunofluorescence anti-nuclear antibody (IFANA) test and could potentially be used as substrate for routine IFANA detection. © 2012 The Authors International Journal of Rheumatic Diseases © 2012 Asia Pacific League of Associations for Rheumatology and Wiley Publishing Asia Pty Ltd.

  5. Anatomia das vias biliares em doadores e receptores de transplante hepático inter vivos

    OpenAIRE

    Soares,Renato Vianna; Coelho,Júlio Cezar U.; Jorge E. F. Matias; Alexandre C.T. de Freitas; Zeni-Neto,Clementino; Godoy,José Luis de

    2006-01-01

    RACIONAL: Variações anatômicas das vias biliares são freqüentes e aumentam as complicações dos transplantes hepáticos. OBJETIVO: Avaliar a anatomia das vias biliares nos doadores e receptores do transplante hepático inter vivos realizados no Hospital de Clínicas da Universidade Federal do Paraná e do Hospital Nossa Senhora das Graças de Curitiba, Curitiba, PR. CASUÍSTICA E MÉTODOS: A avaliação foi retrospectiva de março de 1998 até setembro de 2002 (23 transplantes), quando os dados passaram ...

  6. Habitat Evaluation Procedures (HEP) Report : Priest River, 2004-2005 Technical Report.

    Energy Technology Data Exchange (ETDEWEB)

    Entz, Ray

    2005-02-01

    On July 6, 2004, the Habitat Evaluation Procedure (HEP) was used to determine baseline habitat suitability on the Priest River property, an acquisition completed by the Kalispel Tribe of Indians in 2001. Evaluation species and appropriate models include bald eagle, black-capped chickadee, Canada goose, mallard, yellow warbler, and white-tailed deer. Habitat Suitability Index (HSI) values were visually estimated and agreed upon by all HEP team members. The Priest River Project provides a total of 105.41 Habitat Units (HUs) for the species evaluated. Conifer forest habitat provides 26.95 HUs for bald eagle, black-capped chickadee, and white-tailed deer. Grassland habitat provides 23.78 HUs for Canada goose and mallard. Scmb-shrub vegetation provides 54.68 HUs for mallard, yellow warbler, and white-tailed deer.

  7. Absceso hepático asociado a absceso pulmonar y endoftalmitis

    Directory of Open Access Journals (Sweden)

    Jairo Cordero-Chen

    2013-03-01

    Full Text Available El absceso hepático piógeno producido por Klebsiella pneumoniae es relativamente raro y puede complicarse con lesiones sépticas a distancia. Esto se relaciona con características propias del germen que incluyen el genotipo K1, resistencia a la fagocitosis y la presencia del gen mag-A. Tales metástasis sépticas contemplan absceso pulmonar, meningitis, endocarditis bacteriana y, muy especialmente, endoftalmitis. Esta última ocurre con mayor frecuencia en pacientes diabéticos, y puede causar ceguera. Se reporta caso de absceso hepático por K. pneumoniae asociado a absceso pulmonar y endoftalmitis, y se revisa epidemiología, fisiopatología, diagnóstico y tratamiento de la entidad.

  8. Many-core applications to online track reconstruction in HEP experiments

    Energy Technology Data Exchange (ETDEWEB)

    Amerio, S. [Padua U.; Bastieri, D. [Padua U.; Corvo, M. [Padua U.; Gianelle, A. [Padua U.; Ketchum, W. [Los Alamos; Liu, T. [Fermilab; Lonardo, A. [INFN, Rome; Lucchesi, D. [Padua U.; Poprocki, S. [Cornell U.; Rivera, R. [Fermilab; Tosoratto, L. [INFN, Rome; Vicini, P. [INFN, Rome; Wittich, P. [Cornell U.

    2013-11-02

    Interest in parallel architectures applied to real time selections is growing in High Energy Physics (HEP) experiments. In this paper we describe performance measurements of Graphic Processing Units (GPUs) and Intel Many Integrated Core architecture (MIC) when applied to a typical HEP online task: the selection of events based on the trajectories of charged particles. We use as benchmark a scaled-up version of the algorithm used at CDF experiment at Tevatron for online track reconstruction – the SVT algorithm – as a realistic test-case for low-latency trigger systems using new computing architectures for LHC experiment. We examine the complexity/performance trade-off in porting existing serial algorithms to many-core devices. Measurements of both data processing and data transfer latency are shown, considering different I/O strategies to/from the parallel devices.

  9. CERN Library | Book presentation and discussion round: "HEP - Still an unfeminine profession" | 19 May | Council Chamber

    CERN Multimedia

    CERN Library

    2016-01-01

    Book presentation and discussion round: "HEP - Still an unfeminine profession" with Mary K. Gaillard.   “HEP – still an unfeminine profession?” Book presentation by Mary K Gaillard, followed by a discussion round with the author and Valerie Gibson (LHCb) Thursday, 19 May 2016 from 4 p.m. (coffee will be served at 3:30 p.m.) CERN Council Chamber Find more information and registration here. We hope to see many of you there! There will also be a Theory seminar by Mary K. Gaillard on "Supergravity at one loop, anomalies and applications to string phenomenology" - Wednesday, 18 May at 2 p.m. in the TH conference room.

  10. Efeitos do resveratrol sobre as células estreladas hepáticas

    OpenAIRE

    Izabel Cristina Custodio de Souza

    2009-01-01

    As células estreladas hepáticas (HSC) são pericitos específicos do fígado, são células armazenadoras de gordura e produzem componentes de matriz extracelular. As HSCs ao serem ativadas, proliferam, perdem as gotas lipídicas e aumentam a secreção de matriz extracelular. O controle da modulação fenotípica e da proliferação das HSCs é de suma importância para entendermos a fibrose hepática. Esta pesquisa foi realizada com a linhagem celular GRX (representativa das HSCs murinas) obtida a partir d...

  11. The future of commodity computing and many-core versus the interests of HEP software

    CERN Document Server

    CERN. Geneva

    2012-01-01

    As the mainstream computing world has shifted from multi-core to many-core platforms, the situation for software developers has changed as well. With the numerous hardware and software options available, choices balancing programmability and performance are becoming a significant challenge. The expanding multiplicative dimensions of performance offer a growing number of possibilities that need to be assessed and addressed on several levels of abstraction. This paper reviews the major tradeoffs forced upon the software domain by the changing landscape of parallel technologies – hardware and software alike. Recent developments, paradigms and techniques are considered with respect to their impact on the rather traditional HEP programming models. Other considerations addressed include aspects of efficiency and reasonably achievable targets for the parallelization of large scale HEP workloads.

  12. The future of commodity computing and many-core versus the interests of HEP software

    CERN Document Server

    Jarp, Sverre; Nowak, Andrzej

    2012-01-01

    As the mainstream computing world has shifted from multi-core to many-core platforms, the situation for software developers has changed as well. With the numerous hardware and software options available, choices balancing programmability and performance are becoming a significant challenge. The expanding multiplicative dimensions of performance offer a growing number of possibilities that need to be assessed and addressed on several levels of abstraction. This paper reviews the major trade-offs forced upon the software domain by the changing landscape of parallel technologies - hardware and software alike. Recent developments, paradigms and techniques are considered with respect to their impact on the rather traditional HEP programming models. Other considerations addressed include aspects of efficiency and reasonably achievable targets for the parallelization of large scale HEP workloads.

  13. Biosynthesis of hematite nanoparticles and its cytotoxic effect on HepG2 cancer cells.

    Science.gov (United States)

    Rajendran, Kumar; Karunagaran, Vithiya; Mahanty, Biswanath; Sen, Shampa

    2015-03-01

    Iron oxide nanoparticles were gaining significant importance in a variety of applications due to its paramagnetic properties and biocompatibility. Various chemical methods were employed for hematite nanoparticle synthesis which require special equipment or a complex production process. In this study, protein capped crystalline hexagonal hematite (α-Fe2O3) nanoparticles were synthesized by green approach using culture supernatant of a newly isolated bacterium, Bacillus cereus SVK1 at ambient conditions. The synthesized nanoparticles were characterized by electron microscopy, X-ray diffraction, UV-visible spectroscopy and Fourier transform infrared spectroscopic analysis. Nanoparticles were evaluated for its possible anticancer activity against HepG2 liver cancer cells by MTT assay. Hematite nanoparticles with an average diameter of 30.2 nm, exhibited a significant cytotoxicity toward HepG2 cells in a concentration-dependent manner (CTC50=704 ng/ml). Copyright © 2014 Elsevier B.V. All rights reserved.

  14. Software R&D for Next Generation of HEP Experiments, Inspired by Theano

    CERN Document Server

    CERN. Geneva

    2015-01-01

    In the next decade, the frontiers of High Energy Physics (HEP) will be explored by three machines: the High Luminosity Large Hadron Collider (HL-LHC) in Europe, the Long Base Neutrino Facility (LBNF) in the US, and the International Linear Collider (ILC) in Japan. These next generation experiments must address two fundamental problems in the current generation of HEP experimental software: the inability to take advantage and adapt to the rapidly evolving processor landscape, and the difficulty in developing and maintaining increasingly complex software systems by physicists. I will propose a strategy, inspired by the automatic optimization and code generation in Theano, to simultaneously address both problems. I will describe three R&D projects with short-term physics deliverables aimed at developing this strategy. The first project is to develop maximally sensitive General Search for New Physics at the LHC by applying the Matrix Element Method running GPUs of HPCs. The second is to classify and reconstru...

  15. THE TRANSMEMBRANE SIGNAL TRANSDUCTION IN HEp-2 CELLS INDUCED BY BACTERIAL ADHERENCE

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    @@ In order to understand the role of transmembrane signal transduction of host cells in the early steps of infection,the adherence of E. coli to HEp-2 cells and the change of activity of phospholipase C-γ (PLC-γ) induced by the adherence were investigated.The adherence of enteropathogenic E.coli (EPEC), strain E.7, induced a significant increase of inositol-triphosphat (IP-3) level in HEp-2 cells. The adherence of the bacteria and the increase of IP-3 was kinetically correlated. Whereas the increase of IP3 level induced by the adherence of the control strain EPEC (H511), a non-piliated strain, was much meager than that by E7, a piliated strain. The results highlighted an important role of transmembrane signals like IP-3 in the pathogenesis of EPEC.

  16. Insuficiência hepática pelo uso de isoniazida: relato de caso

    OpenAIRE

    Pereira,Ricardo Mendes; Tresoldi,Antonia Teresinha; Hessel,Gabriel

    2000-01-01

    A isoniazida e a pirazinamida são drogas hepatotóxicas bem conhecidas. O aparecimento da lesão hepática, em relação ao início do tratamento, é precoce com a isoniazida e mais tardio e mais grave com a pirazinamida. O objetivo deste trabalho é relatar caso de um lactente de cinco meses de idade com tuberculose pulmonar e meníngea, que desenvolveu hepatite tóxica com insuficiência hepática, durante o uso de isoniazida, pirazinamida e rifampicina. As manifestações clínicas e as alterações labora...

  17. Improved Constraints on the hep Solar Neutrino and Diffuse Supernova Neutrino Background Fluxes with SNO

    Science.gov (United States)

    Mastbaum, Andrew; SNO Collaboration

    2017-01-01

    The Sudbury Neutrino Observatory (SNO) has demonstrated that the apparent deficit in solar neutrinos observed on Earth is due to matter-enhanced flavor transitions and provided precise measurements of the relevant model parameters. The low backgrounds and large, spectral νe - d cross section that enabled this program also give SNO unique sensitivity to two yet-unobserved neutrino signals of interest: hep solar neutrinos and the νe component of the diffuse supernova neutrino background (DSNB). We have developed a combined hep and DSNB search making use of the full SNO dataset. We perform both a cut-and-count analysis and a multidimensional spectral fit, improving upon previously reported constraints based on the initial phase of SNO running only.

  18. Mapping modern software process engineering techniques onto an HEP development environment

    CERN Document Server

    Wellisch, J P

    2003-01-01

    One of the most challenging issues faced in HEP in recent years is the question of how to capitalise on software development and maintenance experience in a continuous manner. To capitalise means in our context to evaluate and apply new process technologies as they arise, and to further evolve technologies already widely in use. It also implies the definition and adoption of standards. The CMS off- line software improvement effort aims at continual software quality improvement, and continual improvement in the efficiency of the working environment with the goal to facilitate doing great new physics. To achieve this, we followed a process improvement program based on ISO-15504, and Rational Unified Process. This experiment in software process improvement in HEP has been progressing now for a period of 3 years. Taking previous experience from ATLAS and SPIDER into account, we used a soft approach of continuous change within the limits of current culture to create of de facto software process standards within th...

  19. Summary of the Control System Cyber-Security (CS)2/HEP Workshop

    CERN Document Server

    Lüders, S

    2007-01-01

    Over the last few years modern accelerator and experiment control systems have increasingly been based on commercial-off-the-shelf products (VME crates, PLCs, SCADA systems, etc.), on Windows or Linux PCs, and on communication infrastructures using Ethernet and TCP/IP. Despite the benefits coming with this (r)evolution, new vulnerabilities are inherited, too: Worms and viruses spread within seconds via the Ethernet cable, and attackers are becoming interested in control systems. Unfortunately, control PCs cannot be patched as fast as office PCs. Even worse, vulnerability scans at CERN using standard IT tools have shown that commercial automation systems lack fundamental security precautions: Some systems crashed during the scan, others could easily be stopped or their process data be altered. The (CS)2/HEP workshop held the weekend before ICALEPCS2007 was intended to present, share, and discuss countermeasures deployed in HEP laboratories in order to secure control systems. This presentation will give a summa...

  20. [Study on transient absorption spectrum of tungsten nanoparticle with HepG2 tumor cell].

    Science.gov (United States)

    Cao, Lin; Shu, Xiao-Ning; Liang, Dong; Wang, Cong

    2014-07-01

    Significance of this study lies in tungsten nano materials can be used as a preliminary innovative medicines applied basic research. This paper investigated the inhibition of tungsten nanoparticles which effected on human hepatoma HepG2 cells by MTT. The authors use transient absorption spectroscopy (TAS) technology absorption and emission spectra characterization of charge transfer between nanoparticles and tumor cell. The authors discussed the role of the tungsten nanoparticles in the tumor early detection of the disease and its anti-tumor properties. In the HepG2 experiments system, 100-150 microg x mL(-1) is the best drug concentration of anti-tumor activity which recact violently within 6 hours and basically completed in 24 hours. The results showed that transient absorption spectroscopy can be used as tumor detection methods and characterization of charge transfer between nano-biosensors and tumor cells. Tungsten nanoparticles have potential applications as anticancer drugs.

  1. The role of scientific middleware in the future of HEP computing

    CERN Document Server

    CERN. Geneva

    2004-01-01

    In the 18 months since the CHEP03 meeting in San Diego, the HEP community deployed the current generation of grid technologies in a veracity of settings. Legacy software as well as recently developed applications was interfaced with middleware tools to deliver end-to-end capabilities to HEP experiments in different stages of their life cycles. In a series of data challenges, reprocessing efforts and data distribution activities the community demonstrated the benefits distributed computing can offer and the power a range of middleware tools can deliver. After running millions of jobs, moving tera-bytes of data, creating millions of files and resolving hundreds of bug reports, the community also exposed the limitations of these middleware tools. As we move to the next level of challenges, requirements and expectations, we must also examine the methods and procedures we employ to develop, implement and maintain our common suite of middleware tools. The talk will focus on the role common middleware ...

  2. Nuclear matrix associated protein PML: an arsenic trioxide apoptosis therapeutic target protein in HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    于鼎; 王子慧; 朱立元; 邱殷庆

    2003-01-01

    Objective To investigate arsenic trioxide (As2O3)-induced apoptosis and the effects on cell nuclear matrix related protein promyelocytic leukaemia (PML). Methods HepG2 cells were cultured in MEM medium and treated with 0.5, 2, 5 and 10 μmol/L As2O3 for either 24 h or 96 h at each concentration. In situ terminal deoxynucleotidyl transferase (TdT) labeling (TUNEL) and DNA ladders were used to detect apoptosis. Confocal microscopy and Western blotting were used to observe the expression of PML. Results The growth rates of HepG2 cells were slower in the As2O3 treated than the untreated control group. DNA ladder and TUNEL positive apoptotic cells could be detected in As2O3 treated groups. The expression of PML decreased in HepG2 cells with 2 μmol/L As2O3 treatment. Confocal images demonstrated that the expression of PML protein in HepG2 cell nuclei decreased after treatment with 2 μmol/L As2O3, and micropunctates characteristic of PML protein in HepG2 cell nuclei disappeared after treatment with 5 μmol/L As2O3.Conclusions Our results show that arsenic trioxide can significantly inhibit the growth of HepG2 cells in vitro. As2O3 induces apoptosis in HepG2 tumor cells in a time and concentration dependent manner. As2O3 may degrade the PML protein in HepG2 cell nuclei. The decreased expression of PML in As2O3 treated tumor cells is most likely to be caused by apoptosis. Nuclear matrix associated protein PML could be the target of As2O3 therapy.

  3. Estudio descriptivo de 195 casos de absceso hepático (AH) en Medellín-Colombia

    OpenAIRE

    Enrique Jiménez; Gonzálo Correa Arango; William Mejía; Rodrigo Patiño; Karina Negrete; Juan Carlos González; Jorge Balbín; Gerardo Arteaga; Juan Carlos Restrepo

    2001-01-01

    Existen descripciones con base en series internacionales acerca del absceso hepático, no así en Colombia donde se ha hecho énfasis en el absceso hepático amebiano (AHA) (1). Nuestro objetivo fue describir las características del AHA y no amebiano de nuestro medio y definir algún grado de asociación entre pronóstico y alguna de las
    variables analizadas.

  4. Early Transcriptional Responses of HepG2-A 16 Liver Cells to Infection by Plasmodium falciparum Sporozoites

    Science.gov (United States)

    2011-07-29

    286, ’JC 30, pp Early Transcriptional Responses of HepG2-A 16 Liver Cells to Infection by Plasmodium falciparum Sporozoites*[i] Received for...7500 and󈧏Sun BioMedical Technologies Inc., Ridgecrest, California 93555 Invasion of hepatocytes by Plasmodium sporozoites depos- ited by Anopheles...expression profiling of human HepG2-A16liver cells infected with Plasmodium falciparum sporozoites to understand the host early cellular events and

  5. Estudio descriptivo de 195 casos de absceso hepático (AH en Medellín-Colombia

    Directory of Open Access Journals (Sweden)

    Enrique Jiménez

    2001-04-01

    Full Text Available Existen descripciones con base en series internacionales acerca del absceso hepático, no así en Colombia donde se ha hecho énfasis en el absceso hepático amebiano (AHA (1. Nuestro objetivo fue describir las características del AHA y no amebiano de nuestro medio y definir algún grado de asociación entre pronóstico y alguna de las
    variables analizadas.

  6. HEp-2 Cell Classification: The Role of Gaussian Scale Space Theory as A Pre-processing Approach

    OpenAIRE

    Qi, Xianbiao; Zhao, Guoying; Chen, Jie; Pietikäinen, Matti

    2015-01-01

    \\textit{Indirect Immunofluorescence Imaging of Human Epithelial Type 2} (HEp-2) cells is an effective way to identify the presence of Anti-Nuclear Antibody (ANA). Most existing works on HEp-2 cell classification mainly focus on feature extraction, feature encoding and classifier design. Very few efforts have been devoted to study the importance of the pre-processing techniques. In this paper, we analyze the importance of the pre-processing, and investigate the role of Gaussian Scale Space (GS...

  7. [Establishment of a human laryngeal carcinoma Hep-2/5-Fu cell line and the screening of differentially expressed genes].

    Science.gov (United States)

    Chen, Jie; Wang, Jiadong

    2012-12-01

    To establish a Hep-2/5-Fu of human drug-resistant laryngeal carcinoma cell line, and to screen the possible drug resistance-associated genes. Hep-2/5-Fu of a human drug resistant laryngeal carcinoma cell line was induced by continuously exposing human laryngeal carcinoma cells to gradually increasing concentrations of 5-Fu. The growth law was observed and the growth curve was protracted. The drug resistance of Hep-2/5-Fu was measured by MTT assay and the drug resistant index RI was calculated. Genes expressed differentially between Hep-2/5-Fu and its parent cell line Hep-2 were screened using a gene chip, and several selected drug resistance associated genes were confirmed by reverse transcription-polymerase chain reaction (RT-PCR). Compared with its parental cells, the drug resistance cell line had slower growth rate and larger size. The Hep-2/5-Fu cell line showed cross drug resistance to 5-Fu, cisplatin and vincristine. There were 1210 differentially expressed genes possibly associated with drug resistance by the gene chip screening method. The possible drug resistance-related genes included Cyclin D, IGF-BP3, CASP9, and CDK4/6. The expression of Cyclin D in the Hep-2/5-Fu cell line was 6.5997 times of that in the parent cell line. RT-PCR results were consistent with the gene chip results. The altered biological properties of Hep-2/5-Fu may be related to its drug resistance phenotype. Several genes, such as Cyclin D, are possibly involved in the mechanism of drug resistance in this cell line.

  8. Decorin protects human hepatoma HepG2 cells against oxygen-glucose deprivation via modulating autophagy.

    Science.gov (United States)

    Ju, Wenbo; Li, Shubo; Wang, Zhaohui; Liu, Yanfeng; Wang, Dawei

    2015-01-01

    This study is to investigate the effects of decorin (DCN) on human hepatoma HepG2 cells under oxygen-glucose deprivation (OGD) condition. HepG2 cells were cultured under OGD condition. CCK-8 assay was used to assess the cell survival, and flow cytometry was performed to detect the apoptosis. Protein expression levels were detected with Western blot analysis. Transfection was performed with liposome, and cells were screened with G418. The cell survival rates were significantly decreased in the OGD groups. When treated with autophagy inhibitor 3-MA, the survival rates were further declined in these cells. Moreover, flow cytometry indicated that apoptosis occurred in the HepG2 cells under OGD condition, and the apoptosis rates were significantly increased by the 3-MA treatment. Western blot analysis showed that, the expression levels of DCN were significantly elevated in OGD-preconditioned HepG2 cells. Meanwhile, the expression level of Beclin1 and the LC3BI/LC3BII ratio were significantly increased, while the expression level of P62 was significantly decreased, in HepG2 cells under OGD condition. Over-expression of DCN significantly increased the expression level of Beclin1 and the LC3BI/LC3BII ratio, while no significant changes were observed in the P62 expression level, in HepG2 cells. Under the OGD condition, the apoptosis rate was also significantly decreased in DCN-transfected HepG2 cells. DCN protects HepG2 cells against OGD-induced injury, via regulating autophagy. These results might contribute to a better understanding of the roles of DCN and autophagy in hepatocellular carcinoma, and the potential treatment for the disease.

  9. Autophagy inhibition sensitizes KU-0063794-mediated anti-HepG2 hepatocellular carcinoma cell activity in vitro and in vivo.

    Science.gov (United States)

    Yongxi, Tong; Haijun, Huang; Jiaping, Zheng; Guoliang, Shao; Hongying, Pan

    2015-09-25

    Recent studies have indicated that mammalian target of rapamycin (mTOR) signaling has a critical role in the pathogenesis of hepatocellular carcinoma (HCC). In the current study, we investigated the activity of KU-0063794, a novel mTOR kinase inhibitor, against HepG2 HCC cells. Our results demonstrated that KU-0063794 blocked mTOR complex 1/2 (mTORC1/2) activation, and downregulated mTOR-regulated genes (Cyclin D1 and hypoxia-inducible factor 1α) in HepG2 cells. Consequently, KU-0063794 induced significant anti-survival and pro-apoptotic activities against HepG2 cells. When analyzing the possible KU-0063794-resistance factors, we showed that KU-0063794 induced cyto-protective autophagy activation in HepG2 cells, evidenced by GFP-light chain 3B (LC3B) puncta formation, p62 degradation, Beclin-1 expression and LC3B-I to LC3B-II conversion. Correspondingly, autophagy inhibitors, including bafliomycin A1, 3-methyladenine (3-MA) and chloroquine, dramatically enhanced KU-0063794-induced cytotoxicity against HepG2 cells. Further, RNAi knockdown of Beclin-1 also increased KU-0063794 sensitivity in HepG2 cells. In vivo, oral administration of KU-0063794 repressed HepG2 xenograft growth in severe combined immunodeficient (SCID) mice, and its activity was further enhanced with co-administration of the autophagy inhibitor 3-MA. In summary, KU-0063794 inhibits HepG2 cell growth in vitro and in vivo, its activity could be further enhanced with autophagy inhibition. Copyright © 2015 Elsevier Inc. All rights reserved.

  10. Verbesina encelioides: cytotoxicity, cell cycle arrest, and oxidative DNA damage in human liver cancer (HepG2) cell line.

    Science.gov (United States)

    Al-Oqail, Mai M; Siddiqui, Maqsood A; Al-Sheddi, Ebtesam S; Saquib, Quaiser; Musarrat, Javed; Al-Khedhairy, Abdulaziz A; Farshori, Nida N

    2016-05-10

    Cancer is a major health problem and exploiting natural products have been one of the most successful methods to combat this disease. Verbesina encelioides is a notorious weed with various pharmacological properties. The aim of the present investigation was to screen the anticancer potential of V. encelioides extract against human lung cancer (A-549), breast cancer (MCF-7), and liver cancer (HepG2) cell lines. A-549, MCF-7, and HepG2 cells were exposed to various concentrations of (10-1000 μg/ml) of V. encelioides for 24 h. Further, cytotoxic concentrations (250, 500, and 1000 μg/ml) of V. encelioides induced oxidative stress (GSH and LPO), reactive oxygen species (ROS) generation, mitochondrial membrane potential (MMP), cell cycle arrest, and DNA damage in HepG2 cells were studied. The exposure of cells to 10-1000 μg/ml of extract for 24 h, revealed the concentrations 250-1000 μg/ml was cytotoxic against MCF-7 and HepG2 cells, but not against A-549 cells. Moreover, the extract showed higher decrease in the cell viability against HepG2 cells than MCF-7 cells. Therefore, HepG2 cells were selected for further studies viz. oxidative stress (GSH and LPO), reactive oxygen species (ROS) generation, mitochondrial membrane potential (MMP), cell cycle arrest, and DNA damage. The results revealed differential anticancer activity of V. encelioides against A-549, MCF-7 and HepG2 cells. A significant induction of oxidative stress, ROS generation, and MMP levels was observed in HepG2 cells. The cell cycle analysis and comet assay showed that V. encelioides significantly induced G2/M arrests and DNA damage. These results indicate that V. encelioides possess substantial cytotoxic potential and may warrant further investigation to develop potential anticancer agent.

  11. Cytotoxicity, oxidative stress, and apoptosis in HepG2 cells induced by ionic liquid 1-methyl-3-octylimidazolium bromide.

    Science.gov (United States)

    Li, Xiaoyu; Ma, Junguo; Wang, Jianji

    2015-10-01

    The present study aimed to determine the cytotoxicity of 1-methyl-3-octylimidazolium bromide ([C8mim]Br) on the human hepatocellular carcinoma (HepG2) cells in order to elucidate the biochemical and molecular mechanism of [C8mim]Br-cytotoxicity. For this purpose, cell viability, oxidative stress, apoptosis, caspase activity, and apoptosis-related gene expression in HepG2 cells following [C8mim]Br-exposure were evaluated. The results showed that viability of HepG2 cells was decreased by [C8mim]Br-exposure in a concentration-dependent pattern. Moreover, biochemical assays reveal that [C8mim]Br-exposure can induce apoptosis, cause overproduction of reactive oxygen species (ROS), inhibit superoxide dismutase and catalase, reduce glutathione content, and increase the cellular malondialdehyde level of HepG2 cells. The transcriptions of p53 and bax were markedly up-regulated while bcl-2 was significantly down-regulated in HepG2 cells after [C8mim]Br-exposure, suggesting that p53 and bcl-2 family may be involved in the cytotoxicity and apoptosis of HepG2 cells caused by [C8mim]Br. In addition, we also found that caspase-3, caspase-8, and caspase-9 were significantly activated in HepG2 cells following [C8mim]Br-exposure. Our results suggest that ROS may be a key early signal of [C8mim]Br-induced apoptosis and caspases play a key role in the initiation and execution of apoptosis of HepG2 cells. Copyright © 2015 Elsevier Inc. All rights reserved.

  12. Quercetin reduces cyclin D1 activity and induces G1 phase arrest in HepG2 cells.

    Science.gov (United States)

    Zhou, Jin; Li, L U; Fang, L I; Xie, Hua; Yao, Wenxiu; Zhou, Xiang; Xiong, Zhujuan; Wang, L I; Li, Zhixi; Luo, Feng

    2016-07-01

    Quercetin is able to inhibit proliferation of malignant tumor cells; however, the exact mechanism involved in this biological process remains unclear. The current study utilized a quantitative proteomic analysis to explore the antitumor mechanisms of quercetin. The leucine of HepG2 cells treated with quercetin was labeled as d3 by stable isotope labeling by amino acids in cell culture (SILAC). The isotope peaks of control HepG2 cells were compared with the d3-labeled HepG2 cells by mass spectrometry (MS) to identify significantly altered proteins. Reverse transcription-polymerase chain reaction (RT-PCR) and western blot analyses were subsequently employed to verify the results of the MS analysis. A flow cytometry assay was designed to observe the influence of various quercetin treatment concentrations on the cell cycle distribution of HepG2 cells. The results indicated that quercetin is able to substantially inhibit proliferation of HepG2 cells and induce an obvious morphological alteration of cells. According to the MS results, the 70 credibly-changed proteins that were identified may play important roles in multiple cellular processes, including protein synthesis, signaling, cytoskeletal processes and metabolism. Among these functional proteins, the expression of cyclin D1 (CCND1) was found to be significantly decreased. RT-PCR and western blot analyses verified the SILAC-MS results of decreased CCND1 expression. In summary, flow cytometry revealed that quercetin is able to induce G1 phase arrest in HepG2 cells. Based on the aforementioned observations, it is suggested that quercetin exerts antitumor activity in HepG2 cells through multiple pathways, including interfering with CCND1 gene expression to disrupt the cell cycle and proliferation of HepG2 cells. In the future, we aim to explore this effect in vivo.

  13. Estradiol and Estrogen Receptor Agonists Oppose Oncogenic Actions of Leptin in HepG2 Cells.

    Directory of Open Access Journals (Sweden)

    Minqian Shen

    Full Text Available Obesity is a significant risk factor for certain cancers, including hepatocellular carcinoma (HCC. Leptin, a hormone secreted by white adipose tissue, precipitates HCC development. Epidemiology data show that men have a much higher incidence of HCC than women, suggesting that estrogens and its receptors may inhibit HCC development and progression. Whether estrogens antagonize oncogenic action of leptin is uncertain. To investigate potential inhibitory effects of estrogens on leptin-induced HCC development, HCC cell line HepG2 cells were treated with leptin in combination with 17 β-estradiol (E2, estrogen receptor-α (ER-α selective agonist PPT, ER-β selective agonist DPN, or G protein-coupled ER (GPER selective agonist G-1. Cell number, proliferation, and apoptosis were determined, and leptin- and estrogen-related intracellular signaling pathways were analyzed. HepG2 cells expressed a low level of ER-β mRNA, and leptin treatment increased ER-β expression. E2 suppressed leptin-induced HepG2 cell proliferation and promoted cell apoptosis in a dose-dependent manner. Additionally E2 reversed leptin-induced STAT3 and leptin-suppressed SOCS3, which was mainly achieved by activation of ER-β. E2 also enhanced ERK via activating ER-α and GPER and activated p38/MAPK via activating ER-β. To conclude, E2 and its receptors antagonize the oncogenic actions of leptin in HepG2 cells by inhibiting cell proliferation and stimulating cell apoptosis, which was associated with reversing leptin-induced changes in SOCS3/STAT3 and increasing p38/MAPK by activating ER-β, and increasing ERK by activating ER-α and GPER. Identifying roles of different estrogen receptors would provide comprehensive understanding of estrogenic mechanisms in HCC development and shed light on potential treatment for HCC patients.

  14. Culture of the causative organism of donovanosis (Calymmatobacterium granulomatis) in HEp-2 cells.

    OpenAIRE

    J. Carter; Hutton, S.; Sriprakash, K. S.; Kemp, D J; Lum, G; Savage, J.; Bowden, F. J.

    1997-01-01

    We report successful culture of Calymmatobacterium granulomatis by standard cell culture methods. Swabs were obtained from lesions in three patients with a clinical diagnosis of donovanosis. For two patients, there was histological confirmation of the disease (i.e., the presence of Donovan bodies in Giemsa-stained smears). Specimens were inoculated onto cycloheximide-treated HEp-2 cell monolayers in RPMI 1640 medium (supplemented with fetal calf serum, NaHCO3, vancomycin hydrochloride, and be...

  15. Gene Transfection Mediated by Ultrasound and Pluronic P85 in HepG2 Cells

    Institute of Scientific and Technical Information of China (English)

    WANG Fen; LI Kaiyan; CHEN Yunchao; DENG Yuan; HONG Kai

    2007-01-01

    In order to assess whether gene transfection could be mediated by ultrasound in associa- tion with P85 and find the appropriate parameters of ultrasound irradiation, the effects of ultrasound with or without P85 on gene transfection of HepG2 cells were examined. The HepG2 cells were irra- diated by ultrasound at 1 MHz, 0.4-2.0 W/cm2 and 50% duty cycle with plasmid encoding enhanced green fluorescent protein (EGFP) as a report gene. Forty-eight h later, the expression of EGFP was detected under the fluorescence microscopy. Transfection efficacy was quantitatively assessed by flow cytometry, and cell viability was evaluated by trypan blue exclusion. The results showed that the transfection efficacy was increased with the increases in ultrasound output power and the ideal trans- fection efficacy was achieved in HepG2 cells irradiated by ultrasound at 0.8 W/cm2 for 30 s. The transfection efficacy in ulstrasound+P85 group was three times higher than in single ultrasound group [(17.63±1.07)% vs (5.57±0.56)%, P<0.051. The cell viability was about 81% and 62% in ultrasound group and ultrasound+P85 group respectively. It was concluded that ultrasound in combination with P85 could mediate the gene transfection of HepG2 cells, ideal transfection efficacy was achieved by ultrasound irradiation at 0.8 W/cm2 for 30 s, and P85 could somewhat increase the damage to cells caused by ultrasound.

  16. A bag of cells approach for antinuclear antibodies HEp-2 image classification.

    Science.gov (United States)

    Wiliem, Arnold; Hobson, Peter; Minchin, Rodney F; Lovell, Brian C

    2015-06-01

    The antinuclear antibody (ANA) test via indirect immunofluorescence applied on Human Epithelial type 2 (HEp-2) cells is a pathology test commonly used to identify connective tissue diseases (CTDs). Despite its effectiveness, the test is still considered labor intensive and time consuming. Applying image-based computer aided diagnosis (CAD) systems is one of the possible ways to address these issues. Ideally, a CAD system should be able to classify ANA HEp-2 images taken by a camera fitted to a fluorescence microscope. Unfortunately, most prior works have primarily focused on the HEp-2 cell image classification problem which is one of the early essential steps in the system pipeline. In this work we directly tackle the specimen image classification problem. We aim to develop a system that can be easily scaled and has competitive accuracy. ANA HEp-2 images or ANA images are generally comprised of a number of cells. Patterns exhibiting in the cells are then used to make inference on the ANA image pattern. To that end, we adapted a popular approach for general image classification problems, namely a bag of visual words approach. Each specimen is considered as a visual document containing visual vocabularies represented by its cells. A specimen image is then represented by a histogram of visual vocabulary occurrences. We name this approach as the Bag of Cells approach. We studied the performance of the proposed approach on a set of images taken from 262 ANA positive patient sera. The results show the proposed approach has competitive performance compared to the recent state-of-the-art approaches. Our proposal can also be expanded to other tests involving examining patterns of human cells to make inferences. © 2014 International Society for Advancement of Cytometry.

  17. Constraining the HEP solar neutrino and diffuse supernova neutrino background fluxes with the Sudbury Neutrino Observatory

    Science.gov (United States)

    Mastbaum, Andrew T.

    2016-09-01

    The Sudbury Neutrino Observatory has demonstrated that the apparent deficit in solar neutrinos observed on Earth is due to matter-enhanced flavor transitions, and provided precision measurements of the relevant oscillation parameters. The low backgrounds and large, spectral charged-current nue-d cross section that enabled these measurements also give SNO unique sensitivity to two yet-unobserved neutrino signals of great interest: the hep solar neutrino flux and the diffuse supernova neutrino background (DSNB). This work presents a joint analysis of all three running configurations of the SNO experiment in order to improve constraints on the hep and DSNB nue fluxes. The crucial uncertainties in the energy response and atmospheric neutrino background, as well as the event selection criteria, are reevaluated. Two analysis approaches are taken, a single-bin counting analysis (hep and DSNB) and multidimensional signal extraction fit (hep), using a random sample representing 1/3 of the total SNO data. These searches are the most sensitive to date for these important signals, and will improve further when the full dataset is analyzed. The SNO+ liquid scintillator experiment is a successor to SNO primarily concerned with a search for neutrinoless double-beta decay (0nubetabeta) in 130Te. The modifications to the SNO detector in preparation for SNO+ and an analysis of the 0nubetabeta sensitivity of this upcoming experiment will also be presented in this work. SNO+ will be the first experiment to load Te into liquid scintillator, and is expected to achieve world-class sensitivity in an initial phase commencing in 2017, with significantly improved sensitivity in an upgraded configuration to follow using much higher Te target mass.

  18. Tumor necrosis factor α accelerates Hep-2 cells proliferation by suppressing TRPP2 expression.

    Science.gov (United States)

    Wu, Jing; Guo, Jizheng; Yang, Yunyun; Jiang, Feifei; Chen, Shuo; Wu, Kaile; Shen, Bing; Liu, Yehai; Du, Juan

    2017-06-29

    TRPP2, a Ca(2+)-permeable non-selective cation channel, has been shown to negatively regulate cell cycle, but the mechanism underlying this regulation is unknown. Tumor necrosis factor α (TNF-α) is a proinflammatory cytokine extensively involved in immune system regulation, cell proliferation and cell survival. However, the effects and mechanisms for the role of TNF-α in laryngeal cancer remain unclear. Here, we demonstrated using western blot analyses and intracellular Ca(2+) concentration measurements that TNF-α treatment suppressed both TRPP2 expression and ATP-induced Ca(2+) release in a laryngeal cancer cell line (Hep-2). Knockdown of TRPP2 by a specific siRNA significantly decreased ATP-induced Ca(2+) release and abolished the effect of TNF-α on the ATP-induced Ca(2+) release. TNF-α treatment also enhanced Hep-2 cell proliferation and growth, as determined using cell counting and flow cytometry cell cycle assays. Moreover, TNF-α treatment down-regulated phosphorylated protein kinase R-like endoplasmic reticulum kinase (p-PERK) and phosphorylated eukaryotic translation initiation factor (p-eIF2α) expression levels, without affecting PERK and eIF2α expression levels in Hep-2 cells. We concluded that suppressing TRPP2 expression and TRPP2-mediated Ca(2+) signaling may be one mechanism underlying TNF-α-enhanced Hep-2 cell proliferation. These results offer new insights into the mechanisms of TNF-α-mediated laryngeal cancer cell proliferation, and provide evidences showing a potential role of TNF-α in the development of laryngeal cancer.

  19. Cacao polyphenols influence the regulation of apolipoprotein in HepG2 and Caco2 cells.

    Science.gov (United States)

    Yasuda, Akiko; Natsume, Midori; Osakabe, Naomi; Kawahata, Keiko; Koga, Jinichiro

    2011-02-23

    Cocoa powder is rich in polyphenols, such as catechins and procyanidins, and has been shown to inhibit low-density lipoprotein (LDL) oxidation and atherogenesis in a variety of models. Human studies have also shown daily intake of cocoa increases plasma high-density lipoprotein (HDL) and decreases LDL levels. However, the mechanisms responsible for these effects of cocoa on cholesterol metabolism have yet to be fully elucidated. The present study investigated the effects of cacao polyphenols on the production of apolipoproteins A1 and B in human hepatoma HepG2 and intestinal Caco2 cell lines. The cultured HepG2 cells or Caco2 cells were incubated for 24 h in the presence of cacao polyphenols such as (-)-epicatechin, (+)-catechin, procyanidin B2, procyanidin C1, and cinnamtannin A2. The concentration of apolipoproteins in the cell culture media was quantified using an enzyme-linked immunoassay, and the mRNA expression was quantified by RT-PCR. Cacao polyphenols increased apolipoprotein A1 protein levels and mRNA expression, even though apolipoprotein B protein and the mRNA expression were slightly decreased in both HepG2 cells and Caco2 cells. In addition, cacao polyphenols increased sterol regulatory element binding proteins (SREBPs) and activated LDL receptors in HepG2 cells. These results suggest that cacao polyphenols may increase the production of mature form SREBPs and LDL receptor activity, thereby increasing ApoA1 and decreasing ApoB levels. These results elucidate a novel mechanism by which HDL cholesterol levels become elevated with daily cocoa intake.

  20. Object Persistency for HEP Data Using an Object—Relational Database

    Institute of Scientific and Technical Information of China (English)

    MarcinNowak; DirkDuellmann; 等

    2001-01-01

    We present an initial study of the object features of Oracle 9i-the first of the market-leading object-relational database systems that supports a true object model on the server side as well as an ODMG-style C++ language binding on the client side.We discuss how these features can be used to provide persistent object storage in the HEP environment.

  1. Transfection of p27 kip1 enhances radiosensitivity induced by 60Coγ-irradiation in hepatocellular carcinoma HepG2 cell line

    Institute of Scientific and Technical Information of China (English)

    Xiao-Xiang Guan; Long-Bang Chen; Gui-Xia Ding; Wei De; Ai-Hua Zhang

    2004-01-01

    AIM: To study the cell cycle alterations of human hepatoma cell line HepG2 in vitro after 60Co γ-irradiation and further to examine the mechanisms underlying the enhancement of radiosensitivity to γ-irradiation in HepG2 transiently transfected with wild type p27kip1.METHODS: The proliferation of HepG2 cells was evaluated with MTT assay, and the cell cycle profile and apoptosis were assessed by cell morphology, DNA fragmentation analysis and flow cytometry. HepG2 cells were transfected with p27kip1 wild type by using Lipofectamine (LF2000), and the expression and subcellular localization of p27kip1 in HepG2were detected by immunocytochemistry.RESULTS: 60Co γ-irradiation inhibited the growth of HepG2cells in a dose-dependent manner. Apoptosis of HepG2 cells was induced 48 h after γ ray exposure. Furthermore research was carried out to induce exogenous expression of p27kip1in HepG2. The expression of p27kip1 induced G0/G1 phase arrest in HepG2 cells. The overexpression of p27kip1 enhanced 60Co γ-irradiation-induced radiosensitivity in HepG2 cells.CONCLUSION: Overexpression of p27kip1 is a rational approach to improve conventional radiotherapy outcomes, which may be a possible strategy for human hepatoma therapy.

  2. Investigation of quercetin-induced HepG2 cell apoptosis-associated cellular biophysical alterations by atomic force microscopy.

    Science.gov (United States)

    Pi, Jiang; Li, Baole; Tu, Lvying; Zhu, Haiyan; Jin, Hua; Yang, Fen; Bai, Haihua; Cai, Huaihong; Cai, Jiye

    2016-01-01

    Quercetin, a wildly distributed bioflavonoid, has been proved to possess excellent antitumor activity on hepatocellular carcinoma (HCC). In the present study, the biophysical properties of HepG2 cells were qualitatively and quantitatively determined using high resolution atomic force microscopy (AFM) to understand the anticancer effects of quercetin on HCC cells at nanoscale. The results showed that quercetin could induce severe apoptosis in HepG2 cells through arrest of cell cycle and disruption of mitochondria membrane potential. Additionally, the nuclei and F-actin structures of HepG2 cells were destroyed by quercetin treatment as well. AFM morphological data showed some typical apoptotic characterization of HepG2 cells with increased particle size and roughness in the ultrastructure of cell surface upon quercetin treatment. As an important biophysical property of cells, the membrane stiffness of HepG2 cells was further quantified by AFM force measurements, which indicated that HepG2 cells became much stiffer after quercetin treatment. These results collectively suggest that quercetin can be served as a potential therapeutic agent for HCC, which not only extends our understanding of the anticancer effects of quercetin against HCC cells into nanoscale, but also highlights the applications of AFM for the investigation of anticancer drugs.

  3. Production of coagulation factor VII in human cell lines Sk-Hep-1 and HKB-11.

    Science.gov (United States)

    Corrêa de Freitas, Marcela Cristina; Bomfim, Aline de Sousa; Mizukami, Amanda; Picanço-Castro, Virgínia; Swiech, Kamilla; Covas, Dimas Tadeu

    2017-09-01

    Recombinant factor VII (rFVII) is the main therapeutic choice for hemophilia patients who have developed inhibitory antibodies against conventional treatments (FVIII and FIX). Because of the post-translational modifications, rFVII needs to be produced in mammalian cell lines. In this study, for the first time, we have shown efficient rFVII production in HepG2, Sk-Hep-1, and HKB-11 cell lines. Experiments in static conditions for a period of 96 h showed that HepG2-FVII produced the highest amounts of rhFVII, with an average of 1843 ng/mL. Sk-hep-1-FVII cells reached a maximum protein production of 1432 ng/mL and HKB-11-FVII cells reached 1468 ng/mL. Sk-Hep-1-rFVII and HKB-11-rFVII were selected for the first step of scale-up. Over 10 days of spinner flask culture, HKB-11 and SK-Hep-1 cells showed a cumulative production of rFVII of 152 μg and 202.6 μg in 50 mL, respectively. Thus, these human cell lines can be used for an efficient production of recombinant FVII. With more investment in basic research, human cell lines can be optimized for the commercial production of different bio therapeutic proteins. Copyright © 2017 Elsevier Inc. All rights reserved.

  4. Glypican-3 is useful but not superior to Hep Par 1 in differentiating hepatocellular carcinoma from other liver tumours.

    Science.gov (United States)

    Pour, A M; Masir, N; Rose, I M

    2016-12-01

    To assess the diagnostic utility of glypican-3 (GPC-3) in comparison to Hep Par 1 in the diagnosis of liver tumours, a cross-sectional study involving 66 resected liver tumours were tested for the protein expression of these markers by immunohistochemistry using monoclonal antibodies. Of the 66 cases, 26 (39.4%) were hepatocellular carcinoma (HCC), 4 (6.1%) were intrahepatic cholangiocarcinoma and 36 (54.5%) were metastatic tumours. Hep Par 1 and GPC-3 expressions in HCC were 24/26 (92.3%) and 19/26 (73.1%) respectively. In contrast, of non-HCC cases, only 2/40 cases (5.0%) expressed Hep Par 1, including a metastatic colorectal adenocarcinoma and a metastatic gastric adenocarcinoma. GPC-3 was expressed in 3/40 cases (7.5%), i.e. a metastatic adenocarcinoma of unknown origin, a metastatic gastric adenocarcinoma and an intrahepatic cholangiocarcinoma. The sensitivity and specificity for Hep Par 1 were 92.3% and 95% respectively while that of GPC-3 was 73.1% and 92.5% respectively. GPC-3 is a useful marker in the diagnosis of HCC. However it is not superior to Hep Par 1 in its sensitivity and specificity. We recommend that it is utilized together with Hep Par 1 as a panel in the diagnosis of HCC.

  5. Autophagy in anti-apoptotic effect of augmenter of liver regeneration in HepG2 cells.

    Science.gov (United States)

    Shi, Hong-Bo; Sun, Hai-Qing; Shi, Hong-Lin; Ren, Feng; Chen, Yu; Chen, De-Xi; Lou, Jin-Li; Duan, Zhong-Ping

    2015-05-07

    To investigate the role of autophagy in the anti-apoptotic effect of augmenter of liver regeneration (ALR). Autophagy was induced through serum deprivation. An ALR-expressing plasmid was transfected into HepG2 cells, and autophagic flux was determined using fluorescence microscopy, electron microscopy, Western blot and quantitative polymerase chain reaction (qPCR) assays. After ALR-expressing plasmid transfection, an autophagy inhibitor [3-methyladenine (3-MA)] was added to HepG2 cells, and apoptosis was observed using fluorescence microscopy and flow cytometry. Autophagy was activated in HepG2 cells, peaking at 24 h after serum deprivation. Microtubule-associated protein light chain three-II levels were higher in HepG2 cells treated with ALR than in control cells, fluorescence microscopy, electron microscopy and qPCR studies showed the similar trend, and p62 levels showed the opposite trend, which indicated that ALR may play an important role in increasing autophagy flux. The numbers of apoptotic cells were substantially higher in HepG2 cells treated with both ALR and 3-MA than in cells treated with ALR alone. Therefore, the protective effect of ALR was significantly attenuated or abolished when autophagy was inhibited, indicating that the anti-apoptotic effect of ALR may be related to autophagy. ALR protects cells from apoptosis partly through increased autophagy in HepG2 cells and may be valuable as a new therapeutic treatment for liver disease.

  6. Cisplatin combined with hyperthermia kills HepG2 cells in intraoperative blood salvage but preserves the function of erythrocytes.

    Science.gov (United States)

    Yang, Jin-ting; Tang, Li-hui; Liu, Yun-qing; Wang, Yin; Wang, Lie-ju; Zhang, Feng-jiang; Yan, Min

    2015-05-01

    The safe use of intraoperative blood salvage (IBS) in cancer surgery remains controversial. Here, we investigated the killing effect of cisplatin combined with hyperthermia on human hepatocarcinoma (HepG2) cells and erythrocytes from IBS in vitro. HepG2 cells were mixed with concentrated erythrocytes and pretreated with cisplatin (50, 100, and 200 μg/ml) alone at 37 °C for 60 min and cisplatin (25, 50, 100, and 200 μg/ml) combined with hyperthermia at 42 °C for 60 min. After pretreatment, the cell viability, colony formation and DNA metabolism in HepG2 and the Na(+)-K(+)-ATPase activity, 2,3-diphosphoglycerate (2,3-DPG) concentration, free hemoglobin (Hb) level, osmotic fragility, membrane phosphatidylserine externalization, and blood gas variables in erythrocytes were determined. Pretreatment with cisplatin (50, 100, and 200 μg/ml) combined with hyperthermia (42 °C) for 60 min significantly decreased HepG2 cell viability, and completely inhibited colony formation and DNA metabolism when the HepG2 cell concentration was 5×10(4) ml(-1) in the erythrocyte (P0.05). In conclusion, pretreatment with cisplatin (50 μg/ml) combined with hyperthermia (42 °C) for 60 min effectively eliminated HepG2 cells from IBS but did not significantly affect erythrocytes in vitro.

  7. Galactomannan from Schizolobium amazonicum seed and its sulfated derivatives impair metabolism in HepG2 cells.

    Science.gov (United States)

    Cunha de Padua, Monique Meyenberg; Suter Correia Cadena, Silvia Maria; de Oliveira Petkowicz, Carmen Lucia; Martinez, Glaucia Regina; Rodrigues Noleto, Guilhermina

    2017-08-01

    This study evaluated the effects of native galactomannan from Schizolobium amazonicum seeds and its sulfated forms on certain metabolic parameters of HepG2 cells. Aqueous extraction from S. amazonicum seeds furnished galactomannan with 3.2:1 Man:Gal ratio (SAGM) and molar mass of 4.34×10(5)g/mol. The SAGM fraction was subjected to sulfation using chlorosulfonic acid to obtain SAGMS1 and SAGMS2 with DS of 0.4 and 0.6, respectively. Cytotoxicity of SAGM, SAGMS1, and SAGMS2 was evaluated in human hepatocellular carcinoma cells (HepG2). After 72h, SAGM decreased the viability of HepG2 cells by 50% at 250μg/mL, while SAGMS1 reduced it by 30% at the same concentration. SAGM, SAGMS1, and SAGMS2 promoted a reduction in oxygen consumption and an increase in lactate production in non-permeabilized HepG2 cells after 72h of treatment. These results suggest that SAGM, SAGMS1, and SAGMS2 could be recognized by HepG2 cells and might trigger alterations that impair its survival. These effects could be implicated in the modification of the oxidative phosphorylation process in HepG2 cells and activation of the glycolytic pathway. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. Cytotoxic effect of oxaloacetate on HepG2-human hepatic carcinoma cells via apoptosis and ROS accumulation.

    Science.gov (United States)

    Jiao, Y; Ji, L; Kuang, Y; Yang, Q

    2017-01-01

    Oxaloacetate (OA) is one of the intermediates of the Krebs cycle. In addition to its role in energy production, OA may have other effects on the cell. We report here that OA could have a cell type dependent cytotoxic effect on the human hepatic carcinoma cell line HepG2 through induction of apoptosis and reactive oxygen species (ROS) accumulation. In our study, OA decreased the viability and colony formation of HepG2 cells and induced cell death. Caspase-3 activity was increased, the pro-apoptotic protein Bax was up-regulated, and the anti-apoptotic protein Bcl-2 was down-regulated in OA-treated HepG2 cells indicating that apoptosis through the intrinsic pathway was involved in the cell death. The ROS level in OA-treated HepG2 cells was increased. The anti-oxidant N-acetylcysteine (NAC) and glutathione (GSH) prevented the OA-induced decrease in cell but did not alter the enhanced apoptotic Bax/Bcl-2 mRNA ratio. These results suggest that the OA-induced apoptosis of HepG2 cell is not driven by oxidative damage and at least two distinct mechanisms, one mediated by ROS and one involving apoptosis, result in the cytotoxic effects of OA on HepG2 cells. These studies expand the biological functional repertoire of OA and provide a mechanism by which hepatocellular carcinoma may be targeted by OA.

  9. Expression, localization, and clinical application of the RNA binding domain of U1-70kD in HEp-2 cells.

    Science.gov (United States)

    Song, Yang; Chen, Shun-le; Shen, Nan; Xue, Feng; Ye, Ping; Bao, Chun-de; Gu, Yue-ying; Yu, Chong-zhao; Lu, Liang-jing

    2015-01-01

    To develop an improved substrate for indirect immunofluorescent test (IIF) to detect anti-U1-70kD autoantibodies. The RNA binding domain of U1-70kD (U1BD) complementary DNA was obtained from human larynx carcinoma cell line HEp-2 by reverse transcription-polymerase chain reaction (RT-PCR) and cloned into the mammalian expression vector pEGFP-C1. The recombinant plasmid pEGFP-U1BD was transfected into HEp-2 cells. Immunoblotting (IBT), confocal fluorescence microscopy, and IIF were used to confirm the expression, localization, and antigenicity of fusion proteins of green fluorescent protein (GFP) in transfected HEp-2 cells, which were then analyzed by IIF using human reference sera and compared with untransfected HEp-2 cells simultaneously. (1) The HEp-U1BD cells thus obtained retained their ability to express U1BD-GFP, which showed the antigenicity of U1BD with a characteristic phenotype in IIF. (2) Fifteen IBT-positive anti-U1-70kD sera presented with characteristic cytoplasmic staining on HEp-U1BD by IIF, but five sera without the 70kD reactive band in IBT were not found in the presence of HEp-U1BD pattern. Ten sera of healthy donors couldn't react with HEp-2 and HEp-U1BD at 1:80 attenuant degrees. (3) No differences in expression, localization, or morphology were observed when HEp-U1BD or HEp-2 interacted with the reference sera that could react with Ro/SSA, La/SSB, centromere, histone, and Scl-70 antigens in routine IIF test. HEp-U1BD cells kept the immunofluorescent properties of HEp-2 cells in an immunofluorescence anti-nuclear antibody (IFANA) test and could be potentially used as a substrate for routine IFANA detection. © 2015 by the Association of Clinical Scientists, Inc.

  10. Printing out Particle Detectors with 3D-Printers, a Potentially Transformational Advance for HEP Instrumentation

    CERN Document Server

    Hohlmann, M

    2013-01-01

    This white paper suggests posing a "grand challenge" to the HEP instrumentation community, i.e. the aggressive development of additive manufacturing, also known as 3D-printing, for the production of particle detectors in collaboration with industry. This notion is an outcome of discussions within the instrumentation frontier group during the 2013 APS-DPF Snowmass summer study conducted by the U.S. HEP community. Improvements of current industrial 3D-printing capabilities by one to two orders of magnitude in terms of printing resolution, speed, and object size together with developing the ability to print composite materials could enable the production of any desired 3D detector structure directly from a digital model. Current industrial 3D-printing capabilities are briefly reviewed and contrasted with capabilities desired for printing detectors for particle physics, with micro-pattern gaseous detectors used as a first example. A significant impact on industrial technology could be expected if HEP were to part...

  11. Knockdown of nucleophosmin induces S-phase arrest in HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    Qing-Qing Wang; Zhi-Yi Zhang; Jian-Yong Xiao; Chun Yi; Lin-Zi Li; Yan Huang; Jing-Ping Yun

    2011-01-01

    Nucleophosmin/B23 (NPM) is a universally expressed nucleolar phosphoprotein that participates in proliferation,apoptosis,ribosome assembly,and centrosome duplication; however,the role of NPM in cell cycle regulation is not well characterized.We investigated the mechanism by which NPM is involved in cell cycle regulation.NPM was knocked down using siRNA in HepG2 hepatoblastoma cells.NPM translocation following actinomycin D (ActD) treatment was investigated using immunofluorescent staining.Expression of NPM and other factors involved in cell cycle regulation was examined by Westem blotting.Cell cycle distribution was measured using flow cytometry to detect 5-ethynyl-2'-deoxyuddine (EdU) incorporation.Cell proliferation was quantified by the MTT assay.Knockdown of NPM increased the percentage of HepG2 calls in S phase and led to decreased expression of P53 and P21Cp1/WAF1.S-phase arrest in HepG2 cells was significantly enhanced by ActD treatment.Furthermore,knockdown of NPM abrogated ActD-induced G2/M phase call cycle arrest.Taken together,these data demonstrate that inhibition of NPM has a significant effect on the cell cycle.

  12. Habitat Evaluation Procedures (HEP) Report; Burlington Bottoms, Technical Report 1993-2003.

    Energy Technology Data Exchange (ETDEWEB)

    Beilke, Susan

    1993-08-01

    Burlington Bottoms, consisting of approximately 417 acres of riparian and wetland habitat, was purchased by the Bonneville Power Administration in November 1991. The site is located approximately 1/2 mile north of the Sauvie Island Bridge (T2N R1W Sections 20, 21), and is bound on the east side by Multnomah Channel and on the west side by the Burlington Northern Railroad right-of-way and U.S. Highway 30 (Figures 1 and 2). Wildlife habitat values resulting from the purchase of this site will contribute toward the goal of mitigating for habitat lost as outlined in the Columbia and Willamette River Basin's Fish and Wildlife Program and Amendments. Under this Program, mitigation goals were developed as a result of the loss of wildlife habitat due to the development and operation of Federal hydro-electric facilities in the Columbia and Willamette River Basins. In 1993, an interdisciplinary team was formed to develop and implement quantitative Habitat Evaluation Procedures (HEP) to document the value of various habitats at Burlington Bottoms. Results of the HEP will be used to: (1) determine the current status and habitat enhancement potential of the site consistent with wildlife mitigation goals and objectives; and (2) develop a management plan for the area. HEP participants included; Charlie Craig, BPA; Pat Wright, Larry Rasmussen, and Ron Garst, U. S. Fish and Wildlife Service; John Christy, The Nature Conservancy; and Doug Cottam, Sue Beilke, and Brad Rawls, Oregon Department of Fish and Wildlife.

  13. SUMO-1 Enhancing the p53-induced HepG2 Cell Apoptosis

    Institute of Scientific and Technical Information of China (English)

    LU Xingrong; YI Jilin

    2005-01-01

    Summary: In order to investigate the effect of small ubiquitin-like modifier-1 (SUMO-1) on the p53-induced HepG2 cell apoptosis, HepG2 cells were transfected by recombinant plasmids as pwtp53, pMDM2 and pSUMO-1 respectively. Western blot was employed to detect the protein expression of the transfected recombinant plasmids and the rate of apoptosis was measured by flow cytometry. The results showed that in cells transfected with pwtp53 and pwtp53+pSUMO-1, the apoptosis rate was (16.79±1.62) % and (18.15±1.36) % respectively, while transfected with pwtp53+pMDM2, the rate was decreased to (5.17±1.23) %. The apoptosis rate was (14.06±1.84) % in the cells transfected with pwtp53+pMDM2+pSUMO-1, significantly higher than that in the cells Transfected with pwtp53+pMDM2 (P<0.01). The apoptosis rates in the cells were all less than 2 % and had no significant difference among the groups. It was suggested that in the HepG2 cells, SUMO-1 can increase the apoptosis induced by wild-type p53 through binding to p53 protein, post-translational modification and inhibiting the p53 degradation by MDM2.

  14. [Establishment of a model for evaluating hypolipidemic effect in HepG2 cells].

    Science.gov (United States)

    Niu, Yucun; Lü, Na; Li, Ying; Zhao, Dan; Sun, Changhao

    2010-03-01

    To establish a model of evaluating hypolipidemic effect in vitro. Adding cholesterol to the culture medium for HepG2 cells to induce a hypercholesterolemia model. The content of cellular cholesterol and the expression of protein regulating cholesterol metabolism in HepG2 cells were determined. The validation of the model was identified by lovastatin, a widely used cholesterol-lowering drug. Free fatty acid was added to the culture medium for HepG2 cells to induce a hypertriglyceridemia model. The content of cellular triglyceride and the absorption rate of free fatty acid were determined. The validation of the model was identified by fenofibrate, a triglyceride-lowering drug. Cellular cholesterol content was increased and the expression of HMG-CoA redutase, SREBP-2 and LDLR were decreased after adding cholesterol and 25-hydrocholesterol to the culture medium. Cellular cholesterol was decreased and the expression of SREBP-2 and LDLR were up-regulated by Lovastatin. The absorption of oleic acid in cells was up to 40% after adding oleic acid (50 micromol) to the culture medium for 6 h. The absorption of free fatty acid was increased but the content of cellular triglyceride was not increased in cells by Fenofibrate. This model might be an effective method for screening and assessing functional factors for lowing plasma lipids.

  15. Tea pigments induce cell-cycle arrest and apoptosis in HepG2 cells

    Institute of Scientific and Technical Information of China (English)

    Xu-Dong Jia; Chi Han; Jun-Shi Chen

    2005-01-01

    AIM: To investigate the molecular mechanisms by which tea pigments exert preventive effects on liver carcinogenesis.METHODS: HepG2 cells were seeded at a density of 5×105/well in six-well culture dishes and incubated overnight. The cells then were treated with various concentrations of tea pigments over 3 d, harvested by trypsinization, and counted using a hemocytometer. Flow cytometric analysis was performed by a flow cytometer after propidium iodide labeling. Bcl-2 and p21WAF1 proteins were determined by Western blotting. In addition, DNA laddering assay was performed on treated and untreated cultured HepG2 cells.RESULTS: Tea pigments inhibited the growth of HepG2 cells in a dose-dependent manner. Flow-cytometric analysis showed that tea pigments arrested cell cycle progression at G1 phase. DNA laddering was used to investigate apoptotic cell death, and the result showed that 100 mg/L of tea pigments caused typical DNA laddering. Our study also showed that tea pigments induced upregulation of p21WAF1 protein and downregulation of Bcl-2 protein.CONCLUSION: Tea pigments induce cell-cycle arrest and apoptosis. Tea pigments may be used as an ideal chemopreventive agent.

  16. Potentiation of resveratrol-induced apoptosis by matrine in human hepatoma HepG2 cells.

    Science.gov (United States)

    Ou, Xiuyuan; Chen, Yan; Cheng, Xinxin; Zhang, Xumeng; He, Qiyang

    2014-12-01

    Resveratrol, a natural polyphenolic phytochemical, has received considerable attention due to its potential chemopreventive and chemotherapeutic properties. In the present study, we first evaluated the growth-inhibitory effect of resveratrol on HepG2 cells and explored the underlying molecular mechanisms. Resveratrol inhibited proliferation and induced apoptosis in HepG2 cells via activation of caspase-9 and caspase-3, upregulation of the Bax/Bcl-2 ratio and induction of p53 expression. Cell cycle analysis demonstrated that resveratrol arrested cell cycle progression in the G1 and S phase. We further focused on the combination of matrine, a natural component extracted from the traditional Chinese medical herb Sophora flavescens Ait., as a mechanism to potentiate the growth-inhibitory effect of resveratrol on HepG2 cells. Both MTT and colony formation assay results indicated that the combined treatment of resveratrol and matrine exhibited a synergistic antiproliferative effect. In addition, resveratrol-induced apoptosis was significantly enhanced by matrine, which could be attributed to activation of caspase-3 and caspase-9, downregulation of survivin, induction of reactive oxygen species (ROS) generation and disruption of mitochondria membrane potential (Δψm). Our findings suggest that the combination treatment of resveratrol and matrine is a promising novel anticancer strategy for liver cancer; it also provides new insights into the mechanisms of combined therapy.

  17. Parameter-free effective field theory calculation for the solar proton-fusion and hep processes

    Energy Technology Data Exchange (ETDEWEB)

    T.S. Park; L.E. Marcucci; R. Schiavilla; M. Viviani; A. Kievsky; S. Rosati; K. Kubodera; D.P. Min; M. Rho

    2002-08-01

    Spurred by the recent complete determination of the weak currents in two-nucleon systems up to {Omicron}(Q{sup 3}) in heavy-baryon chiral perturbation theory, we carry out a parameter-free calculation of the threshold S-factors for the solar pp (proton-fusion) and hep processes in an effective field theory that combines the merits of the standard nuclear physics method and systematic chiral expansion. The power of the EFT adopted here is that one can correlate in a unified formalism the weak-current matrix elements of two-, three- and four-nucleon systems. Using the tritium {beta}-decay rate as an input to fix the only unknown parameter in the theory, we can evaluate the threshold S factors with drastically improved precision; the results are S{sub pp}(0) = 3.94 x (1 {+-} 0.004) x 10{sup -25} MeV-b and S{sub hep}(0) = (8.6 {+-} 1.3) x 10{sup -20} keV-b. The dependence of the calculated S-factors on the momentum cutoff parameter {Lambda} has been examined for a physically reasonable range of {Lambda}. This dependence is found to be extremely small for the pp process, and to be within acceptable levels for the hep process, substantiating the consistency of our calculational scheme.

  18. Protection of human HepG2 cells against oxidative stress by cocoa phenolic extract.

    Science.gov (United States)

    Martín, María Angeles; Ramos, Sonia; Mateos, Raquel; Granado Serrano, Ana Belén; Izquierdo-Pulido, María; Bravo, Laura; Goya, Luis

    2008-09-10

    Cocoa is a rich source of flavanols and procyanidin oligomers with antioxidative properties, providing protection against oxidation and nitration. The present study investigated the potential protective effect of a polyphenolic extract from cocoa on cell viability and antioxidant defenses of cultured human HepG2 cells submitted to oxidative stress induced by tert-butylhydroperoxide (t-BOOH). Pretreatment of cells with 0.05-50 microg/mL of cocoa polyphenolic extract (CPE) for 2 or 20 h completely prevented cell damage and enhanced activity of antioxidant enzymes induced by a treatment with t-BOOH. Moreover, lower levels of GSH caused by t-BOOH in HepG2 cells were partly recovered by a pretreatment with CPE. Increased reactive oxygen species (ROS) induced by t-BOOH was dose-dependently prevented when cells were pretreated for 2 or 20 h with CPE. These results show that treatment of HepG2 in culture with CPE (within the physiological range of concentrations) confers a significant protection against oxidation to the cells.

  19. Time-course regulation of survival pathways by epicatechin on HepG2 cells.

    Science.gov (United States)

    Granado-Serrano, Ana Belén; Angeles Martín, María; Goya, Luis; Bravo, Laura; Ramos, Sonia

    2009-02-01

    Polyphenols, such as epicatechin, have been reported to exhibit a wide range of biological activities. The objective of the present study was to investigate the time-dependent regulation by epicatechin of survival/proliferation pathways in HepG2 cells. Treatment of HepG2 cells with 10 micromol/L epicatechin did not result in any cell damage up to 18 h, as evaluated by the lactate dehydrogenase assay. Moreover, the enhanced cell death evoked by an oxidative stress induced with tert-butyl hydroperoxide was prevented in the cells pretreated 4 or 18 h with epicatechin. Epicatechin-induced survival was a rapid event that was accompanied by early and sustained activation of major survival signaling proteins, such as AKT/phosphatidylinositol 3-kinase and extracellular-regulated kinase (activated from 5 min to 18 h), as well as protein kinase C (PKC)-alpha (30 min to 18 h), in concert with unaltered c-jun N-amino terminal kinase levels and early inactivation of key death-related signals like PKC-delta (5 min to 18 h). Additionally, reactive oxygen species generation was transiently reduced when cells were treated with 10 micromol/L epicatechin (15-240 min). These data suggest that epicatechin induces cellular survival through a tight regulation of survival/proliferation pathways that requires the integration of different signals and persists over time, the ultimate effect on HepG2 cells being regulated by the balance among these signals.

  20. Fluid shear stress induces epithelial-mesenchymal transition (EMT) in Hep-2 cells

    Science.gov (United States)

    Shen, Yang; Zhang, Yingying; Yin, Hongmei; Zeng, Ye; Liu, Jingxia; Yan, Zhiping; Liu, Xiaoheng

    2016-01-01

    Laryngeal squamous cell carcinoma (LSCC) is one of the most commonly diagnosed malignancies with high occurrence of tumor metastasis, which usually exposes to fluid shear stress (FSS) in lymphatic channel and blood vessel. Epithelial-mesenchymal transition (EMT) is an important mechanism that induces metastasis and invasion of tumors. We hypothesized that FSS induced a progression of EMT in laryngeal squamous carcinoma. Accordingly, the Hep-2 cells were exposed to 1.4 dyn/cm2 FSS for different durations. Our results showed that most of cells changed their morphology from polygon to elongated spindle with well-organized F-actin and abundant lamellipodia/filopodia in protrusions. After removing the FSS, cells gradually recovered their flat polygon morphology. FSS induced Hep-2 cells to enhance their migration capacity in a time-dependent manner. In addition, FSS down-regulated E-cadherin, and simultaneously up-regulated N-cadherin, translocated β-catenin into the nucleus. These results confirmed that FSS induced the EMT in Hep-2 cells, and revealed a reversible mesenchymal-epithelial transition (MET) process when FSS was removed. We further examined the time-expressions of signaling cascades, and demonstrated that FSS induces the EMT and enhances cell migration depending on integrin-ILK/PI3K-AKT-Snail signaling events. The current study suggests that FSS, an important biophysical factor in tumor microenvironment, is a potential determinant of cell behavior and function regulation. PMID:27096955