WorldWideScience

Sample records for delineating wellhead protection

  1. An automatic, stagnation point based algorithm for the delineation of Wellhead Protection Areas

    Science.gov (United States)

    Tosco, Tiziana; Sethi, Rajandrea; di Molfetta, Antonio

    2008-07-01

    Time-related capture areas are usually delineated using the backward particle tracking method, releasing circles of equally spaced particles around each well. In this way, an accurate delineation often requires both a very high number of particles and a manual capture zone encirclement. The aim of this work was to propose an Automatic Protection Area (APA) delineation algorithm, which can be coupled with any model of flow and particle tracking. The computational time is here reduced, thanks to the use of a limited number of nonequally spaced particles. The particle starting positions are determined coupling forward particle tracking from the stagnation point, and backward particle tracking from the pumping well. The pathlines are postprocessed for a completely automatic delineation of closed perimeters of time-related capture zones. The APA algorithm was tested for a two-dimensional geometry, in homogeneous and nonhomogeneous aquifers, steady state flow conditions, single and multiple wells. Results show that the APA algorithm is robust and able to automatically and accurately reconstruct protection areas with a very small number of particles, also in complex scenarios.

  2. Probabilistic Risk Analysis and Fault Trees as Tools in Improving the Delineation of Wellhead Protection Areas: An Initial Discussion

    Science.gov (United States)

    Rodak, C. M.; Silliman, S. E.

    2010-12-01

    Delineation of a wellhead protection area (WHPA) is a critical component of managing / protecting the aquifer(s) supplying potable water to a public water-supply well. While a number of previous authors have addressed questions related to uncertainties in advective capture zones, methods for assessing WHPAs in the presence of uncertainty in the chemistry of groundwater contaminants, the relationship between land-use and contaminant sources, and the impact on health risk within the receiving population are more limited. Probabilistic risk analysis (PRA) combined with fault trees (FT) addresses this latter challenge by providing a structure whereby four key WHPA issues may be addressed: (i) uncertainty in land-use practices and chemical release, (ii) uncertainty in groundwater flow, (iii) variability in natural attenuation properties (and/or remediation) of the contaminants, and (iv) estimated health risk from contaminant arrival at a well. The potential utility of PRA-FT in this application is considered through a simplified case study involving management decisions related both to regional land use planning and local land-use zoning regulation. An application-specific fault tree is constructed to visualize and identify the events required for health risk failure at the well and a Monte Carlo approach is used to create multiple realizations of groundwater flow and chemical transport to a well in a model of a simple, unconfined aquifer. Model parameters allowed to vary during this simplified case study include hydraulic conductivity, probability of a chemical spill (related to land use variation in space), and natural attenuation through variation in rate of decay of the contaminant. Numerical results are interpreted in association with multiple land-use management scenarios as well as multiple cancer risk assumptions regarding the contaminant arriving at the well. This case study shows significant variability of health risk at the well, however general trends were

  3. Delineation of a wellhead protection zone and determination of flowpaths from potential groundwater contaminant source areas at Camp Ripley, Little Falls, Minnesota.

    Energy Technology Data Exchange (ETDEWEB)

    Quinn, J. J.; Environmental Science Division

    2006-12-22

    Groundwater at Camp Ripley, Minnesota, is recharged both on post and off site and discharged to rivers, wetlands, and pumping wells. The subsurface geologic materials have a wide range of permeabilities and are arranged in a complex fashion as a result of the region's multiple glacial advances. Correlation of individual glacial geologic units is difficult, even between nearby boreholes, because of the heterogeneities in the subsurface. This report documents the creation of a numerical model of groundwater flow for Camp Ripley and hydrologically related areas to the west and southwest. The model relies on a hydrogeological conceptual model built on the findings of a University of Minnesota-Duluth drilling and sampling program conducted in 2001. Because of the site's stratigraphic complexity, a geostatistical approach was taken to handle the uncertainty of the subsurface correlation. The U.S. Geological Survey's MODFLOW code was used to create the steady-state model, which includes input data from a variety of sources and is calibrated to water levels in monitoring wells across much of the site. This model was used for several applications. Wellhead protection zones were delineated for on-site production wells H, L, and N. The zones were determined on the basis of a probabilistic assessment of the groundwater captured by these wells; the assessment, in turn, had been based on multiple realizations of the study area's stratigraphy and groundwater flowfield. An additional application of the model was for estimating flowpaths and times of travel for groundwater at Camp Ripley's range areas and waste management facilities.

  4. Evaluation of methods for wellhead protection areas for the State of São Paulo

    Directory of Open Access Journals (Sweden)

    Ana Maciel de Carvalho

    2012-04-01

    Full Text Available The wellhead protection areas play an important role in protecting the groundwater quality exploited by public waterwells. There are some methods that allow to define dimensions and shape of contribution zones, that is, the area wherethe entire surface of the aquifer recharge is captured by well, besides zones based on time traffic, defi ned in time wherea particular contaminant can reach the well. Both zones allow gradual control of land use. This paper has presented acomparative study between three different methods in different aquifers of the State of São Paulo. The methods include:calculated fixed radius, based on cylindrical volumetric flow equation; analytical model, using the equation of uniformflow; and numerical model, using mathematical models to simulate the flow. The results showed that each method generateddifferent areas, both in the shapes and in the dimensions. The two first methods established contribution zones withsimilar sizes, but with different shapes and on average 200% bigger than the results from the numeric method, for thesame hydrogeological conditions. From the results, it appears that the use of the analytical model is feasible as a first approximation,since the data for that are now available for almost all public wells in the state, and its accuracy is superiorto the calculated fixed radius method. In a later stage, where the definition of the contribution zones is more sensitive,the numerical model would be the natural alternative.

  5. Wellhead compression

    Energy Technology Data Exchange (ETDEWEB)

    Harrington, Joe [Sertco Industries, Inc., Okemah, OK (United States); Vazquez, Daniel [Hoerbiger Service Latin America Inc., Deerfield Beach, FL (United States); Jacobs, Denis Richard [Hoerbiger do Brasil Industria de Equipamentos, Cajamar, SP (Brazil)

    2012-07-01

    Over time, all wells experience a natural decline in oil and gas production. In gas wells, the major problems are liquid loading and low downhole differential pressures which negatively impact total gas production. As a form of artificial lift, wellhead compressors help reduce the tubing pressure resulting in gas velocities above the critical velocity needed to surface water, oil and condensate regaining lost production and increasing recoverable reserves. Best results come from reservoirs with high porosity, high permeability, high initial flow rates, low decline rates and high total cumulative production. In oil wells, excessive annulus gas pressure tends to inhibit both oil and gas production. Wellhead compression packages can provide a cost effective solution to these problems by reducing the system pressure in the tubing or annulus, allowing for an immediate increase in production rates. Wells furthest from the gathering compressor typically benefit the most from wellhead compression due to system pressure drops. Downstream compressors also benefit from higher suction pressures reducing overall compression horsepower requirements. Special care must be taken in selecting the best equipment for these applications. The successful implementation of wellhead compression from an economical standpoint hinges on the testing, installation and operation of the equipment. Key challenges and suggested equipment features designed to combat those challenges and successful case histories throughout Latin America are discussed below.(author)

  6. The effects that well depth and wellhead protection have on bacterial contamination of private water wells in the Estes Park Valley, Colorado.

    Science.gov (United States)

    Gonzales, Thomas R

    2008-12-01

    Over the past five years, it is estimated that 10% of residential water wells have tested positive for total coliform and 2% for E.coli bacteria in the Estes Park Valley, Colorado. Many of these water wells are shallow or hand-dug in construction. In this study, samplings of 30 private untreated water wells were tested for total coliform bacteria in the Estes Park Valley. Water wells were classified into three categories for well depth (200 feet [61 m]) and for wellhead protection (poor, fair, and good). Results indicated that 71% of the wells less than 199 feet (60.7 m) tested positive for total coliform (chi2 = 15.559, p wells classified as having poor and fair wellhead protection tested positive for total coliform (chi2 = 13.084, p = .001). This study determined that wellhead protection and well depth does play a role in bacterial contamination of water wells.

  7. Contested delineations: planning, law, and the governance of protected areas

    NARCIS (Netherlands)

    Beunen, R.; Assche, van K.

    2013-01-01

    In this paper we reflect on the relationship between planning and law. We analyse the Dutch interpretation and implementation of the European Union Habitats and Birds Directives by investigating the practices of delineation of protected areas. These directives provide a legislative framework for the

  8. A GIS policy approach for assessing the effect of fertilizers on the quality of drinking and irrigation water and wellhead protection zones (Crete, Greece).

    Science.gov (United States)

    Kourgialas, Nektarios N; Karatzas, George P; Koubouris, Georgios C

    2017-03-15

    (wells) are located, this study highlights an analytic method for delineation wellhead protection zones. All these approaches were incorporated in a useful GIS decision support system that aids decision makers in the difficult task of protection groundwater resources. Copyright © 2016 Elsevier Ltd. All rights reserved.

  9. Groundwater protection in fractured media: a vulnerability-based approach for delineating protection zones in Switzerland

    Science.gov (United States)

    Pochon, Alain; Tripet, Jean-Pierre; Kozel, Ronald; Meylan, Benjamin; Sinreich, Michael; Zwahlen, François

    2008-11-01

    A vulnerability-based approach for delineating groundwater protection zones around springs in fractured media has been developed to implement Swiss water-protection regulations. It takes into consideration the diversity of hydrogeological conditions observed in fractured aquifers and provides individual solutions for each type of setting. A decision process allows for selecting one of three methods, depending on the spring vulnerability and the heterogeneity of the aquifer. At the first stage, an evaluation of spring vulnerability is required, which is essentially based on spring hydrographs and groundwater quality monitoring. In case of a low vulnerability of the spring, a simplified method using a fixed radius approach (“distance method”) is applied. For vulnerable springs, additional investigations must be completed during a second stage to better characterize the aquifer properties, especially in terms of heterogeneity. This second stage includes a detailed hydrogeological survey and tracer testing. If the aquifer is assessed as slightly heterogeneous, the delineation of protection zones is performed using a calculated radius approach based on tracer test results (“isochrone method”). If the heterogeneity is high, a groundwater vulnerability mapping method is applied (“DISCO method”), based on evaluating discontinuities, protective cover and runoff parameters. Each method is illustrated by a case study.

  10. Wellhead with non-ferromagnetic materials

    Energy Technology Data Exchange (ETDEWEB)

    Hinson, Richard A [Houston, TX; Vinegar, Harold J [Bellaire, TX

    2009-05-19

    Wellheads for coupling to a heater located in a wellbore in a subsurface formation are described herein. At least one wellhead may include a heater located in a wellbore in a subsurface formation; and a wellhead coupled to the heater. The wellhead may be configured to electrically couple the heater to one or more surface electrical components. The wellhead may include at least one non-ferromagnetic material such that ferromagnetic effects are inhibited in the wellhead. Systems and methods for using such wellheads for treating a subsurface formation are described herein.

  11. INVESTIGATION OF HYDROGEOLOGIC MAPPING TO DELINEATE PROTECTION ZONES AROUND SPRINGS: REPORT OF TWO CASE STUDIES

    Science.gov (United States)

    Methods commonly used to delineate protection zones for water-supply wells are often not directly applicable for springs. This investigation focuses on the use of hydrogeologic mapping methods to identify physical and hydrologic features that control ground-water flow to springs...

  12. Region 9 Wellheads (SDWIS)

    Data.gov (United States)

    U.S. Environmental Protection Agency — EPAâ??s Safe Drinking Water Information System (SDWIS) databases store information about drinking water. The federal version (SDWIS/FED) stores the information EPA...

  13. Delineating Groundwater Vulnerability and Protection Zone Mapping in Fractured Rock Masses: Focus on the DISCO Index

    Directory of Open Access Journals (Sweden)

    Helen Meerkhan

    2016-10-01

    Full Text Available Hard-rock catchments are considered to be source of valuable water resources for water supply to inhabitants and ecosystems. The present work aims to develop a groundwater vulnerability approach in the Caldas da Cavaca hydromineral system (Aguiar da Beira, Central Portugal in order to improve the hydrogeological conceptual site model. Different types of information were overlaid, generating several thematic maps to achieve an integrated framework of key sectors in the study site. Thus, a multi-technical approach was used, encompassing field and laboratory techniques, whereby different types of data were collected from fields such as geology, hydrogeology, applied geomorphology and geophysics and hydrogeomechanics, with the fundamental aim of applying the so-called DISCO index method. All of these techniques were successfully performed and an intrinsic groundwater vulnerability to contamination assessment, based on the multicriteria methodology of GOD-S, DRASTIC-Fm, SINTACS, SI and DISCO indexes, was delineated. Geographic Information Systems (GIS provided the basis on which to organize and integrate the databases and to produce all the thematic maps. This multi-technical approach highlights the importance of groundwater vulnerability to contamination mapping as a tool to support hydrogeological conceptualization, contributing to improving the decision-making process regarding water resources management and sustainability.

  14. 30 CFR 250.617 - Tubing and wellhead equipment.

    Science.gov (United States)

    2010-07-01

    ... wellhead, all annuli (A, B, C, D, etc., annuli). (ii) subsea wells, the tubing head, the production casing... mudline for casing pressure. *Characterized as a well drilled with a subsea wellhead and completed with a... designed, installed, used, maintained, and tested so as to achieve and maintain pressure control. The...

  15. Wellhead anti-frost technology using deep mine geothermal energy

    Institute of Scientific and Technical Information of China (English)

    Guo Pingye; He Manchao; Yang Qin; Chen Chen

    2011-01-01

    The auxiliary shaft is an important location for coal mine heating in the winter,where the main purpose of heating is to prevent icing of the shaft.Wellhead heating requires characteristics of openness,no-noise and big heat loads.The original coal-fired boiler heating mode causes significant waste of energy and environmental pollution due to the low efficiency of the heat exchange.Therefore,to solve these problems,we will use deep mine geothermal energy to heat the wellhead by making full use of its negative pressure field and design a low-temperature water and fan-free heating system.Through numerical calculations we will simulate temperature fields,pressure fields and velocity fields under different air supply temperatures,as well as different air supply outlet locations and varying number of radiators in the wellhead room of a new auxiliary shaft to find the proper layout and number of radiators that meet wellhead anti-frost requirements from our simulation results,in order to provide guidelines for a practical engineering design.Tests on the Zhangshuanglou auxiliary shaft wellhead shows good,look promising and appear to resolve successfully the problem of high energy consumption and high pollution of wellhead heating by a coal-fired boiler.

  16. Capture zone delineation methodology based on the maximum concentration: Preventative groundwater well protection areas for heat exchange fluid mixtures

    Science.gov (United States)

    Okkonen, Jarkko; Neupauer, Roseanna M.

    2016-05-01

    Capture zones of water supply wells are most often delineated based on travel times of water or solute to the well, with the assumption that if the travel time is sufficiently large, the concentration of chemical at the well will not exceed the drinking water standards. In many situations, the likely source concentrations or release masses of contamination from the potential sources are unknown; therefore, the exact concentration at the well cannot be determined. In situations in which the source mass can be estimated with some accuracy, the delineation of the capture zone should be based on the maximum chemical concentration that can be expected at the well, rather than on an arbitrary travel time. We present a new capture zone delineation methodology that is based on this maximum chemical concentration. The method delineates capture zones by solving the adjoint of the advection-dispersion-reaction equation and relating the adjoint state and the known release mass to the expected chemical concentration at the well. We demonstrate the use of this method through a case study in which soil heat exchange systems are potential sources of contamination. The heat exchange fluid mixtures contain known fluid volumes and chemical concentrations; thus, in the event of a release, the release mass of the chemical is known. We also demonstrate the use of a concentration basis in quantifying other measures of well vulnerability including exposure time and time to exceed a predefined threshold concentration at the well.

  17. Wellheads, US EPA Region 9, 2013, SDWIS

    Data.gov (United States)

    U.S. Environmental Protection Agency — EPAâ??s Safe Drinking Water Information System (SDWIS) databases store information about drinking water. The federal version (SDWIS/FED) stores the information EPA...

  18. HGP-A wellhead generator proof-of-feasibility project

    Energy Technology Data Exchange (ETDEWEB)

    1978-11-03

    The HGP-A Wellhead Generator Proof-of-Feasibility Project consists of a nominal 3 Megawatt geothermal steam turbine electric power generating facility, the first geothermal power plant in Hawaii. The plant is being constructed as a research and development project to evaluate geothermal steam as a viable resource to be considered for larger commercial electric power generating stations in Hawaii. The project facilities include a turbine building, with a contiguous service area for plant operations and maintenance, visitor center, and the power plant equipment.

  19. Aspen Delineation - Aspen Delineation Project [ds362

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands, where aspen assessment data was gathered. Aspen assessment information corresponding to this polygon layer can...

  20. GASCAP: Wellhead Gas Productive Capacity Model documentation, June 1993

    Energy Technology Data Exchange (ETDEWEB)

    1993-07-01

    The Wellhead Gas Productive Capacity Model (GASCAP) has been developed by EIA to provide a historical analysis of the monthly productive capacity of natural gas at the wellhead and a projection of monthly capacity for 2 years into the future. The impact of drilling, oil and gas price assumptions, and demand on gas productive capacity are examined. Both gas-well gas and oil-well gas are included. Oil-well gas productive capacity is estimated separately and then combined with the gas-well gas productive capacity. This documentation report provides a general overview of the GASCAP Model, describes the underlying data base, provides technical descriptions of the component models, diagrams the system and subsystem flow, describes the equations, and provides definitions and sources of all variables used in the system. This documentation report is provided to enable users of EIA projections generated by GASCAP to understand the underlying procedures used and to replicate the models and solutions. This report should be of particular interest to those in the Congress, Federal and State agencies, industry, and the academic community, who are concerned with the future availability of natural gas.

  1. Transient flow conditions change how we should think about WHPA delineation: a joint frequency and probability analysis

    Science.gov (United States)

    Rodriguez Pretelin (1), Abelardo; Nowak (1), Wolfgang

    2017-04-01

    Well head protection areas (WHPAs) are frequently used as safety measures for drinking water wells, preventing them from being polluted by restricting land use activities in their proximities. Two sources of uncertainty are involved during delineation: 1) uncertainty in aquifer parameters and 2) time-varying groundwater flow scenarios and their own inherent uncertainties. The former has been studied by Enzenhoefer et al (2012 [1] and 2014 [2]) as probabilistic risk version of WHPA delineation. The latter is frequently neglected and replaced by steady-state assumptions; thereby ignoring time-variant flow conditions triggered either by anthropogenic causes or climatic conditions. In this study we analyze the influence of transient flow considerations in WHPA delineation, following annual seasonality behavior; with transiency represented by four transient conditions: (I) regional groundwater flow direction, (II) strength of the regional hydraulic gradient, (III) natural recharge to the groundwater and (IV) pumping rate. Addressing WHPA delineation in transient flow scenarios is computationally expensive. Thus, we develop an efficient method using a dynamic superposition of steady-state flow solutions coupled with a reversed formulation of advective-dispersive transport based on a Lagrangian particle tracking with continuous injection. This analysis results in a time-frequency map of pixel-wise membership to the well catchment. Additional to transient flow conditions, we recognize two sources of uncertainty, inexact knowledge of transient drivers and parameters. The uncertainties are accommodated through Monte Carlo simulation. With the help of a global sensitivity analysis, we investigate the impact of transiency in WHPA solutions. In particular, we evaluate: (1) Among all considered transients, which ones are the most influential. (2) How influential in WHPA delineation is the transience-related uncertainty compared to aquifer parameter uncertainty. Literature [1] R

  2. INITIAL CHEMICAL AND RESERVOIR CONDITIONS AT LOS AZUFRES WELLHEAD POWER PLANT STARTUP

    Energy Technology Data Exchange (ETDEWEB)

    Kruger, P.; Semprini, L.; Verma, S.; Barragan, R.; Molinar, R.; Aragon, A.; Ortiz, J.; Miranda, C.

    1985-01-22

    One of the major concerns of electric utilities in installing geothermal power plants is not only the longevity of the steam supply, but also the potential for changes in thermodynamic properties of the resource that might reduce the conversion efficiency of the design plant equipment. Production was initiated at Los Azufres geothermal field with wellhead generators not only to obtain electric energy at a relatively early date, but also to acquire needed information about the resource so that plans for large central power plants could be finalized. Commercial electric energy production started at Los Azufres during the summer of 1982 with five 5-MWe wellhead turbine-generator units. The wells associated with these units had undergone extensive testing and have since been essentially in constant production. The Los Azufres geothermal reservoir is a complex structural and thermodynamic system, intersected by at least 4 major parallel faults and producing geothermal fluids from almost all water to all steam. The five wellhead generators are associated with wells of about 30%, 60%, and 100% steam fraction. A study to compile existing data on the chemical and reservoir conditions during the first two years of operation has been completed. Data have been compiled on mean values of wellhead and separator pressures, steam and liquid flowrates, steam fraction, enthalpy, and pertinent chemical components. The compilation serves both as a database of conditions during the start-up period and as an initial point to observe changes with continued and increased production. Current plans are to add additional wellhead generators in about two years followed by central power plants when the data have been sufficiently evaluated for optimum plant design. During the next two years, the data acquired at the five 5-MWe wellhead generator units can be compared to this database to observe any significant changes in reservoir behavior at constant production.

  3. [Uncertainty analysis of groundwater protection and control zoning in Beijing plain].

    Science.gov (United States)

    Lu, Yan; He, Jiang-Tao; Wang, Jun-Jie; Liu, Li-Ya; Zhang, Xiao-Liang

    2012-09-01

    Groundwater pollution prevention mapping has important meaning to groundwater protection, pollution prevention and effective management. A mapping method was built through combining groundwater pollution risk assessment, groundwater value and wellhead protection area zoning. To make the method more accurate, two series of uncertainty analysis were performed and discussed. One was performed by changing the weights of the toxicity, mobility and degradation of pollutants, and the other was by changing the weights of groundwater pollution risk, groundwater value and wellhead protection area zoning. The results showed that the weights of groundwater pollution risk, groundwater value and wellhead protection area zoning were more sensitive than the weights of toxicity, mobility and degradation of pollutants.

  4. Marine magnetic studies over a lost wellhead in Palk Bay, Cauvery Basin, India

    Digital Repository Service at National Institute of Oceanography (India)

    Ramana, M.V.; Subrahmanyam, V.; Sarma, K.V.L.N.S.; Seshavataram, B.T.V.

    Close grid marine magnetic surveys in the vicinity of a drill well site PH 9-1 in Palk Bay revealed that the area is characterized by smooth magnetic field except for a local anomaly caused by a lost wellhead. The smooth magnetic field is attributed...

  5. The preventative power of "pink": Delineating the effects of social identification and protection motivation theory in breast cancer-related advertisements.

    Science.gov (United States)

    Devlin, Michael B; Dillard, Sydney

    2016-01-01

    An online experiment was conducted to assess the extent gender-salient breast cancer awareness advertisements had on influencing risk perception, encouraging preventative behaviors, and gathering health information. Social identification theory and protection motivation theory postulate gender-salient pink-branded advertisements trigger defense mechanisms, countering desired outcomes. This study concludes gender-salient ads focusing on women, and displaying the Susan G. Komen logo caused aversive behaviors, whereas gender-neutral ads, showing medical providers and logos such as American Medical Association, improve health-related reporting. Results also highlight a disconnect between women who socially identify as breast cancer survivors/supporters, and those with no prior experience with breast cancer.

  6. A Lift-Off-Tolerant Magnetic Flux Leakage Testing Method for Drill Pipes at Wellhead

    Science.gov (United States)

    Wu, Jianbo; Fang, Hui; Li, Long; Wang, Jie; Huang, Xiaoming; Kang, Yihua; Sun, Yanhua; Tang, Chaoqing

    2017-01-01

    To meet the great needs for MFL (magnetic flux leakage) inspection of drill pipes at wellheads, a lift-off-tolerant MFL testing method is proposed and investigated in this paper. Firstly, a Helmholtz coil magnetization method and the whole MFL testing scheme are proposed. Then, based on the magnetic field focusing effect of ferrite cores, a lift-off-tolerant MFL sensor is developed and tested. It shows high sensitivity at a lift-off distance of 5.0 mm. Further, the follow-up high repeatability MFL probing system is designed and manufactured, which was embedded with the developed sensors. It can track the swing movement of drill pipes and allow the pipe ends to pass smoothly. Finally, the developed system is employed in a drilling field for drill pipe inspection. Test results show that the proposed method can fulfill the requirements for drill pipe inspection at wellheads, which is of great importance in drill pipe safety. PMID:28117721

  7. A Lift-Off-Tolerant Magnetic Flux Leakage Testing Method for Drill Pipes at Wellhead

    Directory of Open Access Journals (Sweden)

    Jianbo Wu

    2017-01-01

    Full Text Available To meet the great needs for MFL (magnetic flux leakage inspection of drill pipes at wellheads, a lift-off-tolerant MFL testing method is proposed and investigated in this paper. Firstly, a Helmholtz coil magnetization method and the whole MFL testing scheme are proposed. Then, based on the magnetic field focusing effect of ferrite cores, a lift-off-tolerant MFL sensor is developed and tested. It shows high sensitivity at a lift-off distance of 5.0 mm. Further, the follow-up high repeatability MFL probing system is designed and manufactured, which was embedded with the developed sensors. It can track the swing movement of drill pipes and allow the pipe ends to pass smoothly. Finally, the developed system is employed in a drilling field for drill pipe inspection. Test results show that the proposed method can fulfill the requirements for drill pipe inspection at wellheads, which is of great importance in drill pipe safety.

  8. Metal Sealing Performance of Subsea X-tree Wellhead Connector Sealer

    Institute of Scientific and Technical Information of China (English)

    ZHAO Honglin; CHEN Rui; LUO Xiaolan; DUAN Menglan; LU Yinghui; FU Guowei; TIAN Hongping; YE Daohui

    2015-01-01

    The metal sealing performance of subsea X-tree wellhead connectors is crucial for the safety and reliability of subsea X-trees. In order to establish the theoretical relation between metal sealing ring’s contact stress and its structural parameters and working pressure, a mechanical analysis method for double-cone sealing of high pressure vessels is applied in analyzing the metal sealing ring under the condition of preload and operation. As a result, the formula of the unit sealing load for the metal sealing ring under operation with residual preload is shown in this paper, which ensures that the metal sealing ring has an excellent sealing effect and can prevent the metal sealing ring from yielding. Besides, while analyzing the sealing process of the metal sealing ring, the change rule of contact stress and working pressure is concluded here, putting forward that the structural parameters of the metal sealing ring are the major factors affecting the change rule. Finally, the analytical solution through theoretical analysis is compared with the simulation result through finite element analysis in a force feedback experiment, and both are consistent with each other, which fully verifies for the design and calculation theory on metal sealing ring’s contact stress and its structural parameters and working pressure deduced in this paper. The proposed research will be treated as an applicable theory guiding the design of metal seal for subsea X-tree wellhead connectors.

  9. Effect of Measured Wellhead Parameters and Well Scaling on the Computed Downhole Conditions in Cerro Prieto Wells

    Energy Technology Data Exchange (ETDEWEB)

    Goyal, K.P.; Miller, C.W.; Lippmann, M.J.

    1980-12-16

    This paper is devoted to the discussion of the wellbore model and its describing equations, comparison between the computed and measured pressures and the effect of measured wellhead parameters on the downhole pressures in the well. Finally a wellbore model with multiple inside diameters is discussed and the effect of well scaling on the bottom hole pressures is studied.

  10. 30 CFR 282.22 - Delineation Plan.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false Delineation Plan. 282.22 Section 282.22 Mineral... § 282.22 Delineation Plan. All exploration activities shall be conducted in accordance with a Delineation Plan submitted by the lessee and approved by the Director. The Delineation Plan shall describe...

  11. Coalbed Methane Procduced Water Treatment Using Gas Hydrate Formation at the Wellhead

    Energy Technology Data Exchange (ETDEWEB)

    BC Technologies

    2009-12-30

    Water associated with coalbed methane (CBM) production is a significant and costly process waste stream, and economic treatment and/or disposal of this water is often the key to successful and profitable CBM development. In the past decade, advances have been made in the treatment of CBM produced water. However, produced water generally must be transported in some fashion to a centralized treatment and/or disposal facility. The cost of transporting this water, whether through the development of a water distribution system or by truck, is often greater than the cost of treatment or disposal. To address this economic issue, BC Technologies (BCT), in collaboration with Oak Ridge National Laboratory (ORNL) and International Petroleum Environmental Consortium (IPEC), proposed developing a mechanical unit that could be used to treat CBM produced water by forming gas hydrates at the wellhead. This process involves creating a gas hydrate, washing it and then disassociating hydrate into water and gas molecules. The application of this technology results in three process streams: purified water, brine, and gas. The purified water can be discharged or reused for a variety of beneficial purposes and the smaller brine can be disposed of using conventional strategies. The overall objectives of this research are to develop a new treatment method for produced water where it could be purified directly at the wellhead, to determine the effectiveness of hydrate formation for the treatment of produced water with proof of concept laboratory experiments, to design a prototype-scale injector and test it in the laboratory under realistic wellhead conditions, and to demonstrate the technology under field conditions. By treating the water on-site, producers could substantially reduce their surface handling costs and economically remove impurities to a quality that would support beneficial use. Batch bench-scale experiments of the hydrate formation process and research conducted at ORNL

  12. Subsea thermoelectric generators. 1- 10-watt peltier effect prototypes - a step towards autonomous electrical control units at subsea wellheads

    Energy Technology Data Exchange (ETDEWEB)

    Weid, J.P. von der; Silva, J.A.P. da; Gama, A.L.; Sant' Anna, A.C.

    1994-05-01

    Offshore oil production activities require the operation of underwater hydraulic or electric equipment. The high cost of acquisition and installation of umbilical cables to supply power is leading to the development of independently powered cableless equipment, connected to the surface by the transmission and reception of control signals through the water. As a first step toward these autonomous wellhead control systems, the authors designed and successfully tested in laboratory conditions a thermoelectric generator able to supply at least 10 watts of electric power, extracting it from the temperature difference between the oil and the surrounding water. Hydraulic pumps and pressure accumulators, control electronics, and valve actuators for wellhead control units are all technically solved problems, even for seafloors as deep as 1,000 meters. However, an autonomous underwater wellhead control unit can only be conceived if an energy source is available at the seafloor. The development of a reliable and compact power source is indeed a fundamental step towards autonomous wet Christmas tree valve actuators.

  13. International test and demonstration of a 1-MW wellhead generator: Helical screw expander power plant

    Science.gov (United States)

    McKay, R. A.

    1984-06-01

    A 1-MW wellhead generator was tested in 1980, 1981, and 1982 by Mexico, Italy, and New Zealand at Cerro Prieto, Cesano, and Broadlands, respectively. The total flow helical screw expander portable power plant, Model 76-1, had been built for the U.S. Government and field-tested in Utah, USA, in 1978 and 1979. The expander had oversized internal clearances designed for self-cleaning operation on fluids that deposit adherent scale normally detrimental to the utiliation of liquid dominated fields. Conditions with which the expander was tested included inlet pressures of 64 to 220 psia, inlet qualities of 0% to 100%, exhaust pressures of 3.1 to 40 psia, electrial loads of idle and 110 to 933 kW, electrical frequencies of 50 and 60 Hz, male rotor speeds of 2500 to 4000 rpm, and fluid characteristics to 310,000 ppm total dissolved solids and noncondensables to 38 wt % of the vapor. Some testing was done on-grid. Typical expander isentropic efficiency was 40% to 50% with the clearances not closed, and 5 percentage points or more higher with the clearances partly closed. The expander efficiency increased approximately logarithmically with shaft power for most operations, while inlet quality, speed, and pressure ratio across the machine had only small effects. These findings are all in agreement with the Utah test results.

  14. Arsenic-related water quality with depth and water quality of well-head samples from production wells, Oklahoma, 2008

    Science.gov (United States)

    Becker, Carol J.; Smith, S. Jerrod; Greer, James R.; Smith, Kevin A.

    2010-01-01

    The U.S. Geological Survey well profiler was used to describe arsenic-related water quality with well depth and identify zones yielding water with high arsenic concentrations in two production wells in central and western Oklahoma that yield water from the Permian-aged Garber-Wellington and Rush Springs aquifers, respectively. In addition, well-head samples were collected from 12 production wells yielding water with historically large concentrations of arsenic (greater than 10 micrograms per liter) from the Garber-Wellington aquifer, Rush Springs aquifer, and two minor aquifers: the Arbuckle-Timbered Hills aquifer in southern Oklahoma and a Permian-aged undefined aquifer in north-central Oklahoma. Three depth-dependent samples from a production well in the Rush Springs aquifer had similar water-quality characteristics to the well-head sample and did not show any substantial changes with depth. However, slightly larger arsenic concentrations in the two deepest depth-dependent samples indicate the zones yielding noncompliant arsenic concentrations are below the shallowest sampled depth. Five depth-dependent samples from a production well in the Garber-Wellington aquifer showed increases in arsenic concentrations with depth. Well-bore travel-time information and water-quality data from depth-dependent and well-head samples showed that most arsenic contaminated water (about 63 percent) was entering the borehole from perforations adjacent to or below the shroud that overlaid the pump. Arsenic concentrations ranged from 10.4 to 124 micrograms per liter in 11 of the 12 production wells sampled at the well head, exceeding the maximum contaminant level of 10 micrograms per liter for drinking water. pH values of the 12 well-head samples ranged from 6.9 to 9. Seven production wells in the Garber-Wellington aquifer had the largest arsenic concentrations ranging from 18.5 to 124 micrograms per liter. Large arsenic concentrations (10.4-18.5) and near neutral to slightly alkaline

  15. Aspen Delineation - Inyo National Forest [ds366

    Data.gov (United States)

    California Department of Resources — The database represents delineations of known aspen stands where aspen assessments were collected in the Inyo National Forest, Inyo County, California. The Inyo...

  16. Aspen Delineation - Sequoia National Forest [ds378

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands associated with stand assessment data (SEQUOIA_NF_PTS) collected in aspen stands in the Cannell Meadows Ranger...

  17. Defining Hydrophytes for Wetland Identification and Delineation

    Science.gov (United States)

    2012-01-01

    Engineers); Norman Melvin and Michelle Schuman (U.S. Department of Agriculture Natural Resources Conservation Service); Mary Butterwick and Bill...Corps of Engineers Wetlands Delineation Manual (Environmental Laboratory 1987) “Large plants (macrophytes), such as aquatic mosses , liverworts

  18. Aspen Delineation - Plumas National Forest [ds374

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands associated with stand assessment data (PLUMAS_NF_PTS) collected in aspen stands in the Plumas National Forest,...

  19. Aspen Delineation - Lassen National Forest [ds372

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands associated with stand assessment data (LASSEN_NF_EAGLELAKE_PTS) collected in aspen stands in the in the Eagle...

  20. Aspen Delineation - Sierra State Parks [ds380

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands associated with stand assessment data (SIERRA_SP_PTS) collected in aspen stands on lands administered by the...

  1. Delineating organs at risk in radiation therapy

    CERN Document Server

    Ausili Cèfaro, Giampiero; Perez, Carlos A

    2014-01-01

    This book offers an invaluable guide to the delineation of organs at risk of toxicity in patients undergoing radiotherapy. It details the radiological anatomy of organs at risk as seen on typical radiotherapy planning CT scans.

  2. 井口硫化氢气体扩散及检测方法研究%Wellhead Hydrogen Sulfide Gas Diffusion and Detection

    Institute of Scientific and Technical Information of China (English)

    张兴全; 李相方; 李玉军; 徐大融; 马龙; 任美鹏

    2011-01-01

    针对钻井过程中井口溢出的硫化氢气体在大气中扩散且难于检测的问题,建立井口位置流体力学模型.对无风和有风情况下硫化氢的浓度分布进行模拟,并对井口和方井处硫化氢检测方法进行研究.结果表明:无风情况下硫化氢气体容易在方井处积聚,风速对溢出口上部挡板空间硫化氢浓度分布影响很小,对方井处硫化氢浓度影响非常大.针对以上情况,建议在井口处安装倒置放置的扩散武传感器,方井处安装吸入武传感器.从而能更准确检测硫化氢浓度.%Build wellhead position hydrodynamics model , analog the hydrogen sulfide concentration in a condition of no wind or a wind and do researches about testing method of hydrogen sulfide at wellhead and cellar, aimed at hydrogen sulfide spreading and never being easily detected when it spills over from wellhead during drilling wells. It shows that without wind the hydrogen sulfide gas accumulates at the cellar and the speed of wind influents almost nothing on the distribution of the concentration of hydrogen sulfide at the board located in the wellhead and influents much to the hydrogen sulfide concentration at the cellar. Depending on that, a dispersive sensor upside down at the wellhead and a suction sensor at the cellar to test the hydrogen sulfide concentration accurately are suggested place.

  3. Considerations for choosing HOT lane delineation techniques

    Energy Technology Data Exchange (ETDEWEB)

    Hlavacek, I.; Vitek, M. [Texas Univ., Austin, TX (United States); Carrizales, J.; Machemehl, R. [Texas Dept. of Transportation, Austin, TX (Canada)

    2007-07-01

    Transportation agencies are looking for ways to move more vehicles with fewer tax dollars. One innovative technique is managed lanes. These are special purpose lanes on highways with controlled access to allow manipulation of service parameters. An example of a managed facility, high-occupancy toll (HOT) lanes are gaining support as a tool for encouraging higher vehicle occupancy while dealing with many of the shortcomings of high-occupancy vehicle (HOV) lanes. Because managed lanes, including HOT lanes, are controlled access facilities and must be separated from general purpose lanes, one of the principle issues is the type of delineation technique that should be used. Though the specifics of delineating a managed lane are numerous, and allow for a wide variety of possibilities, most delineation techniques used can be categorized into three broad types: concrete barriers, buffer separation, and plastic posts. This paper presented the advantages, disadvantages, required and desirable conditions for implementation of each type. The project involved assembling an expert panel to gather collective knowledge of factors and to share experiences and make recommendations regarding delineation device implementation. Panel recommendations and secondary source information were presented as conceptual guidance regarding managed lane delineation measures. Buffer type delineators were found to be least costly in terms of both initial and maintenance costs, and concrete barriers provide the best means of controlling access so they are the best means of guaranteeing toll collection from all users. 11 refs.

  4. Image-Based Delineation and Classification of Built Heritage Masonry

    Directory of Open Access Journals (Sweden)

    Noelia Oses

    2014-02-01

    Full Text Available Fundación Zain is developing new built heritage assessment protocols. The goal is to objectivize and standardize the analysis and decision process that leads to determining the degree of protection of built heritage in the Basque Country. The ultimate step in this objectivization and standardization effort will be the development of an information and communication technology (ICT tool for the assessment of built heritage. This paper presents the ground work carried out to make this tool possible: the automatic, image-based delineation of stone masonry. This is a necessary first step in the development of the tool, as the built heritage that will be assessed consists of stone masonry construction, and many of the features analyzed can be characterized according to the geometry and arrangement of the stones. Much of the assessment is carried out through visual inspection. Thus, this process will be automated by applying image processing on digital images of the elements under inspection. The principal contribution of this paper is the automatic delineation the framework proposed. The other contribution is the performance evaluation of this delineation as the input to a classifier for a geometrically characterized feature of a built heritage object. The element chosen to perform this evaluation is the stone arrangement of masonry walls. The validity of the proposed framework is assessed on real images of masonry walls.

  5. Delineation of areas having elevated electrical conductivity, orientation and characterization of bedrock fractures, and occurrence of groundwater discharge to surface water at the U.S. Environmental Protection Agency Barite Hill/Nevada Goldfields Superfund site near McCormick, South Carolina

    Science.gov (United States)

    Chapman, Melinda J.; Huffman, Brad A.; McSwain, Kristen Bukowski

    2015-07-16

    During October 2012 through March 2013, the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (EPA) Region 4, Superfund Section, conducted borehole geophysical logging, surface geophysical surveys, and water-quality profiling in selected wells and areas to characterize or delineate the extent of elevated subsurface electrical conductivity at the EPA Barite Hill/Nevada Goldfields Superfund site near McCormick, South Carolina. Elevated electrical conductivity measured at the site may be related to native rock materials, waste rock disposal areas used in past operations, and (or) groundwater having elevated dissolved solids (primarily metals and major ions) related to waste migration. Five shallow screened wells and four open-borehole bedrock wells were logged by using a suite of borehole tools, and downhole water-quality profiles were recorded in two additional wells. Well depths ranged from about 26 to 300 feet below land surface. Surface geophysical surveys based on frequency-domain electromagnetic and distributed temperature sensing (DTS) techniques were used to identify areas of elevated electrical conductivity (Earth materials and groundwater) and potential high dissolved solids in groundwater and surface water on land and in areas along the northern unnamed tributary at the site.

  6. Forest Delineation Based on Airborne LIDAR Data

    Directory of Open Access Journals (Sweden)

    Norbert Pfeifer

    2012-03-01

    Full Text Available The delineation of forested areas is a critical task, because the resulting maps are a fundamental input for a broad field of applications and users. Different national and international forest definitions are available for manual or automatic delineation, but unfortunately most definitions lack precise geometrical descriptions for the different criteria. A mandatory criterion in forest definitions is the criterion of crown coverage (CC, which defines the proportion of the forest floor covered by the vertical projection of the tree crowns. For loosely stocked areas, this criterion is especially critical, because the size and shape of the reference area for calculating CC is not clearly defined in most definitions. Thus current forest delineations differ and tend to be non-comparable because of different settings for checking the criterion of CC in the delineation process. This paper evaluates a new approach for the automatic delineation of forested areas, based on airborne laser scanning (ALS data with a clearly defined method for calculating CC. The new approach, the ‘tree triples’ method, is based on defining CC as a relation between the sum of the crown areas of three neighboring trees and the area of their convex hull. The approach is applied and analyzed for two study areas in Tyrol, Austria. The selected areas show a loosely stocked forest at the upper timberline and a fragmented forest on the hillside. The fully automatic method presented for delineating forested areas from ALS data shows promising results with an overall accuracy of 96%, and provides a beneficial tool for operational applications.

  7. Protective

    Directory of Open Access Journals (Sweden)

    Wessam M. Abdel-Wahab

    2013-10-01

    Full Text Available Many active ingredients extracted from herbal and medicinal plants are extensively studied for their beneficial effects. Antioxidant activity and free radical scavenging properties of thymoquinone (TQ have been reported. The present study evaluated the possible protective effects of TQ against the toxicity and oxidative stress of sodium fluoride (NaF in the liver of rats. Rats were divided into four groups, the first group served as the control group and was administered distilled water whereas the NaF group received NaF orally at a dose of 10 mg/kg for 4 weeks, TQ group was administered TQ orally at a dose of 10 mg/kg for 5 weeks, and the NaF-TQ group was first given TQ for 1 week and was secondly administered 10 mg/kg/day NaF in association with 10 mg/kg TQ for 4 weeks. Rats intoxicated with NaF showed a significant increase in lipid peroxidation whereas the level of reduced glutathione (GSH and the activity of superoxide dismutase (SOD, catalase (CAT, glutathione S-transferase (GST and glutathione peroxidase (GPx were reduced in hepatic tissues. The proper functioning of the liver was also disrupted as indicated by alterations in the measured liver function indices and biochemical parameters. TQ supplementation counteracted the NaF-induced hepatotoxicity probably due to its strong antioxidant activity. In conclusion, the results obtained clearly indicated the role of oxidative stress in the induction of NaF toxicity and suggested hepatoprotective effects of TQ against the toxicity of fluoride compounds.

  8. A Preliminary Study of Automatic Delineation of Eyes on CT Images Using Ant Colony Optimization

    Institute of Scientific and Technical Information of China (English)

    LI Yong-jie; XIE Wei-fu; YAO De-zhong

    2007-01-01

    Eyes are important organs-at-risk (OARs) that should be protected during the radiation treatment of those head tumors. Correct delineation of the eyes on CT images is one of important issues for treatment planning to protect the eyes as much as possible. In this paper, we propose a new method, named ant colony optimization (ACO), to delineate the eyes automatically.In the proposed algorithm, each ant tries to find a closed path, and some pheromone is deposited on the visited path when the ant finds a path. After all ants finish a circle, the best ant will lay some pheromone to enforce the best path. The proposed algorithm is verified on several CT images, and the preliminary results demonstrate the feasibility of ACO for the delineation problem.

  9. Delineation, characterization, and classification of topographic eminences

    Science.gov (United States)

    Sinha, Gaurav

    Topographic eminences are defined as upwardly rising, convex shaped topographic landforms that are noticeably distinct in their immediate surroundings. As opposed to everyday objects, the properties of a topographic eminence are dependent not only on how it is conceptualized, but is also intrinsically related to its spatial extent and its relative location in the landscape. In this thesis, a system for automated detection, delineation and characterization of topographic eminences based on an analysis of digital elevation models is proposed. Research has shown that conceptualization of eminences (and other landforms) is linked to the cultural and linguistic backgrounds of people. However, the perception of stimuli from our physical environment is not subject to cultural or linguistic bias. Hence, perceptually salient morphological and spatial properties of the natural landscape can form the basis for generically applicable detection and delineation of topographic eminences. Six principles of cognitive eminence modeling are introduced to develop the philosophical foundation of this research regarding eminence delineation and characterization. The first step in delineating eminences is to automatically detect their presence within digital elevation models. This is achieved by the use of quantitative geomorphometric parameters (e.g., elevation, slope and curvature) and qualitative geomorphometric features (e.g., peaks, passes, pits, ridgelines, and valley lines). The process of eminence delineation follows that of eminence detection. It is posited that eminences may be perceived either as monolithic terrain objects, or as composites of morphological parts (e.g., top, bottom, slope). Individual eminences may also simultaneously be conceived as comprising larger, higher order eminence complexes (e.g., mountain ranges). Multiple algorithms are presented for the delineation of simple and complex eminences, and the morphological parts of eminences. The proposed eminence

  10. THEORY AND METHOD FOR WETLAND BOUNDARY DELINEATION

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Based on the analysis of the subjectivity of wetland boundary criteria and their causes at present, this paper suggested that, under the condition that the mechanism of wetland formation process has not been understood,"black box" method of System Theory can be used to delineate wetland boundaries scientifically. After analyzing the difference of system construction among aquatic habitats, wetlands and uplands, the lower limit of rooted plants was chosen as the lower boundary criterion of wetlands. Because soil diagnostic horizon is the result of the long-term interaction among all environments, and it is less responsive than vegetation to short-term change, soil diagnostic horizon was chosen as the indicator to delineate wetland upper boundary, which lies at the thinning-out point of soil diagnostic horizon. Case study indicated that it was feasible using the lower limit of rooted plants and the thinning-out point of soil diagnostic horizon as criteria to delineate the lower and upper boundaries of wetland. In the study area, the thinning-out line of albic horizon was coincident with the 55.74m contour line, the maximum horizonerror was less than lm, and the maximum vertical error less than 0.04m. The problem on wetland definition always arises on the boundaries. Having delineated wetland boundaries, wetlands can be defined as follows: wetlands are the transitional zones between uplands and deepwater habitats, they are a kind of azonal complex that are inundated or saturated by surface or ground water, with the lower boundary lying at the lower limit of rooted plants, and the upper boundary at the thinning-out line of upland soil diagnostic horizon.

  11. Recent advances in probabilistic species pool delineations

    Directory of Open Access Journals (Sweden)

    Dirk Nikolaus Karger

    2016-07-01

    Full Text Available A species pool is the set of species that could potentially colonize and establish within a community. It has been a commonly used concept in biogeography since the early days of MacArthur and Wilson’s work on Island Biogeography. Despite their simple and appealing definition, an operational application of species pools is bundled with a multitude of problems, which have often resulted in arbitrary decisions and workarounds when defining species pools. Two recently published papers address the operational problems of species pool delineations, and show ways of delineating them in a probabilistic fashion. In both papers, species pools were delineated using a process-based, mechanistical approach, which opens the door for a multitude of new applications in biogeography. Such applications include detecting the hidden signature of biotic interactions, disentangling the geographical structure of community assembly processes, and incorporating a temporal extent into species pools. Although similar in their conclusions, both ‘probabilistic approaches’ differ in their implementation and definitions. Here I give a brief overview of the differences and similarities of both approaches, and identify the challenges and advantages in their application.

  12. Weighted Average Cost of Retail Gas (WACORG) highlights pricing effects in the US gas value chain: Do we need wellhead price-floor regulation to bail out the unconventional gas industry?

    Energy Technology Data Exchange (ETDEWEB)

    Weijermars, Ruud, E-mail: R.Weijermars@TUDelft.nl [Alboran Energy Strategy Consultants and Department of Geotechnology, Delft University of Technology (Netherlands)

    2011-10-15

    The total annual revenue stream in the US natural gas value chain over the past decade is analyzed. Growth of total revenues has been driven by higher wellhead prices, which peaked in 2008. The emergence of the unconventional gas business was made possible in part by the pre-recessional rise in global energy prices. The general rise in natural gas prices between 1998 and 2008 did not lower overall US gas consumption, but shifts have occurred during the past decade in the consumption levels of individual consumer groups. Industry's gas consumption has decreased, while power stations increased their gas consumption. Commercial and residential consumers maintained flat gas consumption patterns. This study introduces the Weighted Average Cost of Retail Gas (WACORG) as a tool to calculate and monitor an average retail price based on the different natural gas prices charged to the traditional consumer groups. The WACORG also provides insight in wellhead revenues and may be used as an instrument for calibrating retail prices in support of wellhead price-floor regulation. Such price-floor regulation is advocated here as a possible mitigation measure against excessive volatility in US wellhead gas prices to improve the security of gas supply. - Highlights: > This study introduces an average retail price, WACORG. > WACORG can monitor price differentials for the traditional US gas consumer groups. > WACORG also provides insight in US wellhead revenues. > WACORG can calibrate retail prices in support of wellhead price-floor regulation. > Gas price-floor can improve security of gas supply by reducing price volatility.

  13. The role of delineation education programs for improving interobserver variability in target volume delineation in gastric cancer.

    Science.gov (United States)

    Onal, Cem; Cengiz, Mustafa; Guler, Ozan C; Dolek, Yemliha; Ozkok, Serdar

    2017-05-01

    To assess whether delineation courses for radiation oncologists improve interobserver variability in target volume delineation for post-operative gastric cancer radiotherapy planning. 29 radiation oncologists delineated target volumes in a gastric cancer patient. An experienced radiation oncologist lectured about delineation based on contouring atlas and delineation recommendations. After the course, the radiation oncologists, blinded to the previous delineation, provided delineation for the same patient. The difference between delineated volumes and reference volumes for pre- and post-course clinical target volume (CTV) were 19.8% (-42.4 to 70.6%) and 12.3% (-12.0 to 27.3%) (p = 0.26), respectively. The planning target volume (PTV) differences pre- and post-course according to the reference volume were 20.5% (-40.7 to 93.7%) and 13.1% (-10.6 to 29.5%) (p = 0.30), respectively. The concordance volumes between the pre- and post-course CTVs and PTVs were 467.1 ± 89.2 vs 597.7 ± 54.6 cm(3) (p target volume changes on toxicity and local control should be evaluated for further studies. Advances in knowledge: This study demonstrated that a delineation course based on current recommendations helped physicians delineate smaller and more homogeneous target volumes. Better target volume delineation allows proper target volume irradiation and preventing unnecessary normal tissue irradiation.

  14. Comparison of Deep Drill Braced Monument (DDBM) and Borehole Strainmeter (BSM) Wellhead GPS antenna mounts: a Plate Boundary Observatory (PBO) case study from Dinsmore, CA

    Science.gov (United States)

    Williams, T. B.; Austin, K. E.; Borsa, A. A.; Feaux, K.; Jackson, M. E.; Johnson, W.; Mencin, D.

    2010-12-01

    With the 2009 installation of GPS station P793 in Dinsmore, CA, the Plate Boundary Observatory (PBO) created a unique opportunity to directly compare a traditional deep drill braced GPS monument (DDBM) with a borehole strainmeter (BSM) wellhead GPS monument. PBO installed a GPS antenna to the wellhead of BSM B935 to perform a direct comparison to DDBM P327 in an attempt to determine stability and long-term behavior of both. The two adjacent stations share power and communications and are roughly 20 meters apart. The steel BSM casing is cemented ~520ft in meta-sandstone & shale, while the DDBM is anchored ~30ft deep in alluvial river gravels. Both stations are located inside a rural auto wrecking yard, which has potential sources of fixed noise in the form of multipath reflections off large metal objects. Preliminary analysis indicates consistent measurements in the North-South component, and a ~3.3 mm difference in the East-West component that has been detected between the two stations over a 450-day period (~2.7 mm/yr). The analysis utilizes standard PBO data products and differences time series data from each station in the SNARF 1.0 and IGS 2005 reference frames. We estimate the time dependent seasonal variations observed at each station and compare with available temperature and precipitation data to attempt to identify the cause of differential movement between the monuments.

  15. Male pseudohermaphroditism: genetics and clinical delineation.

    Science.gov (United States)

    Simpson, J L

    1978-10-19

    The genetics and clinical delineation of male pseudohermaphroditism are reviewed. These disorders are categorized initially by their genetic etiology--cytogenetic, Mendelian, or teratogenic. It is especially important to distinguish cytogenetic forms, usually associated with 45,X/46,XY mosaicism, from Mendelian (genetic) forms because in the former the prevalence of gonadoblastomas or dysgerminomas is about 15--20%. Genetic forms include (1) those associated with a multiple malformation pattern, (2) those due to an error in adrenal or testicular hormonal biosynthesis, (3) complete testicular feminization, (4) incomplete testicular feminization, (5) Reifenstein syndrome, (6) pseudovaginal perineoscrotal hypospadias, and (7) agondia, and possibly other conditions. Incomplete testicular feminization and the Reifenstein syndrome may or may not represent varied expressivity of the same trait. The designation pseudovaginal perineoscrotal hypospadias is appropriate only if constellations of clinical features are present and if no metabolic abnormalities are demonstrable. Etiology and available genetic data are reviewed for each of these disorders.

  16. Trisomy 4 mosaicism: Delineation of the phenotype.

    Science.gov (United States)

    Bouman, Arjan; van der Kevie-Kersemaekers, Anne-Marie; Huijsdens-van Amsterdam, Karin; Dahhan, Nordin; Knegt, Lia; Vansenne, Fleur; Cobben, Jan Maarten

    2016-04-01

    Trisomy 4 mosaicism in liveborns is very rare. We describe a 17-month-old girl with trisomy 4 mosaicism. Clinical findings in this patient are compared to previously reported patients. Based on the few descriptions available in the literature the common phenotype of trisomy 4 mosaicism seems to consist of IUGR, low birth weight/length/OFC, congenital heart defects, characteristic thumb anomalies (aplasia/hypoplasia), skin abnormalities (hypo-/hyperpigmentation), several dysmorphic features, and likely some degree of intellectual disability. When trisomy 4 mosaicism is suspected clinicians should be aware that a normal karyotype in lymphocytes does not exclude mosaicism for trisomy 4. This report contributes to a further delineation of the phenotype associated with trisomy 4 mosaicism.

  17. Sampling Rate Independent Filtration Approach for Automatic ECG Delineation

    CERN Document Server

    Chereda, Hryhorii; Tymoshenko, Yury

    2016-01-01

    In this paper different types of ECG automatic delineation approaches were overviewed. A combination of these approaches was used to create sampling rate independent filtration algorithm for automatic ECG delineation that is capable of distinguishing different morphologies of T and P waves and QRS complexes. Created filtration algorithm was compared with algorithme \\`a trous. It was investigated that continuous wavelets transform with proposed automatic adaptation for different sampling rates procedure can be used for delineation problem.

  18. Help for delineation: what kind of tools?; Aide a la delineation: quels outils pratiques?

    Energy Technology Data Exchange (ETDEWEB)

    Pointreau, Y.; Bera, G.; Barillot, I. [Centre Henry-S.-Kaplan, CHU Bretonneau, Clinique d' Oncologie Radiotherapie, 37 - Tours (France); Barillot, I. [Universits Francois-Rabelais, 37 - Tours (France)

    2009-10-15

    The planning of radiotherapy has known major developments during the last years. With the emergence of news techniques such as conformational radiotherapy, intensity modulated radiation therapy or stereotactic radiation therapy, the definition of target volumes was of great importance. The recommendations for the target volumes definition have been defined in the ICRU 50 and 62 reports, without any guidelines for volume delineation. Among the uncertainties that may influence the outcome after irradiation, the intra- and inter observers variations in delineation are the most important. Many teams have offered guidelines or atlases to homogenize these volumes and reduce these variations related to medical intervention. The aim of this paper is to present the main recommendations. (authors)

  19. Aspen Delineation - El Dorado National Forest [ds364

    Data.gov (United States)

    California Department of Resources — The database represents delineations of known aspen stands, where aspen assessments were gathered in the Eldorado National Forest, Eldorado and Amador Counties,...

  20. Aspen Delineation - Klamath National Forest, EUI [ds368

    Data.gov (United States)

    California Department of Resources — The database represents delineations of known aspen stands where aspen assessments were collected in the Klamath National Forest, Siskiyou County, California. The...

  1. pyLIDEM: A Python-Based Tool to Delineate Coastal Watersheds Using LIDAR Data

    Science.gov (United States)

    O'Banion, R.; Alameddine, I.; Gronewold, A.; Reckhow, K.

    2008-12-01

    Accurately identifying the boundary of a watershed is one of the most fundamental and important steps in any hydrological assessment. Representative applications include defining a study area, predicting overland flow, estimating groundwater infiltration, modeling pollutant accumulation and wash-off rates, and evaluating effectiveness of pollutant mitigation measures. The United States Environmental Protection Agency (USEPA) Total Maximum Daily Load (TMDL) program, the most comprehensive water quality management program in the United States (US), is just one example of an application in which accurate and efficient watershed delineation tools play a critical role. For example, many impaired water bodies currently being addressed through the TMDL program drain small coastal watersheds with relatively flat terrain, making watershed delineation particularly challenging. Most of these TMDL studies use 30-meter digital elevation models (DEMs) that rarely capture all of the small elevation changes in coastal watersheds, leading to errors not only in watershed boundary delineation, but in subsequent model predictions (such as watershed runoff flow and pollutant deposition rate predictions) for which watershed attributes are key inputs. Manually delineating these low-relief coastal watersheds through the use of expert knowledge of local water flow patterns, often produces relatively accurate (and often more accurate) watershed boundaries as compared to the boundaries generated by the 30-meter DEMs. Yet, manual delineation is a costly and time consuming procedure that is often not opted for. There is a growing need, therefore, particularly to address the ongoing needs of the TMDL program (and similar environmental management programs), for software tools which can utilize high resolution topography data to more accurately delineate coastal watersheds. Here, we address this need by developing pyLIDEM (python LIdar DEM), a python-based tool which processes bare earth high

  2. Design of Cluster-type Explosion-proof Wellhead Heater%防爆集束式井口加热器设计

    Institute of Scientific and Technical Information of China (English)

    陈龙; 王彦博; 孙林; 赵守刚; 杨双春; 潘一

    2014-01-01

    In order to solve the problem that wellhead heating oil experiment devices had poor performances including uneven heating and low heating efficiency, based on Newton cooling law and Fourier Law, the heater efficiency was researched by considering the effect of temperature and pressure. An experimental device for heating oil at wellhead was designed. Cyclone plates were arranged on the heating pipe to increase the flow distance of crude oil, spoilers and fan blades were installed on the oil inlet to change the state of flow and avoid oil-water separation, and increase the heat transfer coefficient. This experimental device can be used to study the effect of fluid state on heating efficiency, which can provide experimental basis for the design of efficient wellhead heater for crude oil.%为了解决井口加热原油实验仪器的贫乏,加热不均匀及加热效率低等问题,根据牛顿冷却公式和傅里叶定律,并考虑了原油温度和压力的影响,对加热器加热效率进行了研究。在此基础上设计了一种油井井口加热原油的实验装置。该装置在加热管上安装旋流片增大原油流动距离,在进口处安装涡流装置用以改变原油流态,增大传热系数,并起到充分混合油水的作用。该实验装置能够研究流体流态对加热效率的影响,为井口加热原油工艺设计提供实验依据,为高效的井口加热器设计提供实验基础。

  3. Stability Analysis of Subsea Wellhead Oil Control Device%水下井口控油装置稳定性分析∗

    Institute of Scientific and Technical Information of China (English)

    李志刚; 李春生; 尚宪朝; 王立权; 曹曼; 鲁冠博

    2016-01-01

    为了保证水下井口救援控油装置在海底转接作业过程中不发生失稳现象,需确定合理的控油装置入泥深度。鉴于此,根据水下井口控油装置结构的受力特点,构建了水下井口控油装置受力的力学模型。根据控油装置所受的海流力、土压力、侧壁摩擦力、土切力和基底反力计算得出控油装置的安全入泥深度要大于2�24 m;根据构建的控油装置力学模型对其地基稳定性、抗滑移和抗倾覆进行了计算分析。计算结果表明,控油装置结构底部抗滑移安全系数为2�78,可抗海流速度极限为3�17 m/s。研究结果可为实际工程作业提供理论支持。%To ensure the subsea wellhead rescue oil control device do not experience instability during switc⁃hing operation, a reasonable in⁃mud depth of the oil control device need to be determined�In view of this, the me⁃chanical model of the subsea wellhead oil control device has been established according to the mechanical charac⁃teristics of the subsea wellhead oil control device structure�Based on the current force, soil pressure, sidewall fric⁃tion, soil shear and basal counterforce on the oil control device, the calculation result suggested that the safety in⁃mud depth should be greater than 2�24 m�Finally, the foundation stability, anti⁃sliding and anti⁃overturning of the oil control device have been calculated according to the established mechanical model�The calculation results show that the bottom of the oil control device structure has an anti⁃sliding safety factor of 2�78 and an anti⁃current speed limit of 3�17 m/s�The study results could provide theoretical support for the actual project operation.

  4. Delineating groundwater and subsurface structures by

    Science.gov (United States)

    Araffa, Sultan Awad Sultan; Helaly, Ahmed S.; Khozium, Ashraf; Lala, Amir M. S.; Soliman, Shokry A.; Hassan, Noha M.

    2015-06-01

    Geophysical tools such as magnetic, gravity and electric resistivity have been used to delineate subsurface structures, groundwater aquifer around Cairo-Belbies Desert road. A dipole-dipole section was measured at the central part of the study area with 2100 m length and electrode spacing 50 m for greater penetration depth. The results of the inverse resistivity data indicate that the study area includes two groundwater aquifers at different depths. The shallow aquifer water is near the surface and the deep aquifer lies at depth of about 115 m and exhibits low resistivity values ranging from 20 to 100 ohm m. One hundred and fifty-two gravity stations were measured using Autograv gravimeter (CG3), different gravity corrections (drift, elevation and latitude corrections) were applied. The corrected data represented by Bouguer anomaly map were filtered into regional and residual gravity anomaly maps. The residual gravity map indicates that the area is dissected by many faults with NW-SE, N-S, E-W and NE-SW trends. One hundred and fifty-three ground magnetic measurements are collected using two Proton magnetometers (Envimag). The corrected magnetic data are represented by total magnetic intensity map that was reduced to the magnetic pole. 3D magnetic modeling was applied to detect the depth of basaltic sheet and basement complex. The results indicated that the elevation of upper surface of basalt is ranging from 148 to -153 m and the elevation of lower surface of basalt is ranging from 148 to 269 m.

  5. 水下导管出泥高度对井口稳定性的影响研究%Research on the Effect of the Underwater Conductor Sludge Height on Wellhead Stability

    Institute of Scientific and Technical Information of China (English)

    张伟国; 谢华; 杨进; 吴怡; 张俊斌; 韦红术; 陈彬

    2012-01-01

    In light of specific problems in engineering, the calculation method and model of the interrelationship between permissible conductor height and tilt angle were formulated. An analysis and evaluation of the conductor sludge height in Gasfield 35 - 2 in Panyu was conducted. The dynamic equalization calculation method was adopted to deal with the wellhead analysis. The above-wellhead equipment force on the wellhead was transmitted and equalized. The uniform calculation model was adopted to verify and simulate the wellhead in different operating conditions. The analysis shows that as for underwater wellhead, the most dangerous operating condition is that of well completion. The lateral force of completion operation is greater than that of drilling operation by an order of magnitude, with a relatively great bending moment. The relation between the permissible wellhead conductor sludge height and the wellhead tilt angle is approximate to that of a quadric curve.%针对工程中的具体问题,提出了导管允许高度与井口倾斜角相互关系的计算方法和模型,并对番禺35-2气田进行了导管出泥高度分析评价研究。对于井口的分析采用力学等化计算方法,把位于井口以上的设备对井口的力进行传递等化,在不同作业工况下采用统一的计算模型进行井口的校核模拟。分析结果表明,对于水下井口而言,最危险工况为完井作业工况,完井工况的侧向力比钻井工况大一个数量级,并且完井工况的弯矩也较大;井口允许导管出泥高度和井口倾角之间近似为二次曲线关系。

  6. Tools to analyse and display variations in anatomical delineation

    NARCIS (Netherlands)

    Ebert, Martin A.; McDermott, L. N.; Haworth, A.; van der Wath, E.; Hooton, B.

    2012-01-01

    Variations in anatomical delineation, principally due to a combination of inter-observer contributions and image-specificity, remain one of the most significant impediments to geometrically-accurate radiotherapy. Quantification of spatial variability of the delineated contours comprising a structure

  7. A detailed study on Catchment delineation for Urban areas

    Science.gov (United States)

    Sharma, B.; B M, A.; Lohani, B.; Jain, A.

    2015-12-01

    Urban flood modelling is carried out for predicting, analysing and planning of floods in urban areas. Catchment information is an important input for urban flood modelling. Automatic catchment delineation at gully gratings for urban areas using appropriate software packages/methods along with an appropriate set of input data and parameters is still a research challenge. Considering the above, the aim of this study is to (i) identify the best suitable software for automatic catchment delineation by considering gully grating as outlet (ii) understand the effect of resolution of DEM on catchments delineated (iii) understand whether to consider DEM or DSM for catchment delineation (iv) study the effect of grid based and TIN based DEM. In this study catchment delineation has been investigated considering IIT Kanpur as a study site. LiDAR data are used to generate DEM/DSM of the study area. A comparative study of catchment delineation has been carried out between ArcHydro 10.1, BASINS 4.1, ArcSWAT, WMS 7.1, and HEC-GeoHMS approaches. Catchments have been delineated for different drainage threshold areas using gully grating points as outlets and their effects have been compared for the aforementioned software. In order to understand the effect of resolution of data, DEMs of 1m and 5m resolution have been generated and compared against each other. Effects of building ridge lines and their contribution to catchment delineation has been studied by generating a DSM of 1m resolution, and comparing the results with catchments delineated using 1m DEM. In order to assess the effects of the types of DEM over catchment delineation, a grid based DEM and TIN based DEM are compared against each other using WMS 7.1 software. The results for the catchment delineation using various software illustrate that ArcHydro 10.1 performs better than any other aforementioned software. Also, it is noted that varied drainage threshold area parameters, resolutions of DEM, selection of DEM

  8. Aspen Delineation - Plumas National Forest, FRRD [ds376

    Data.gov (United States)

    California Department of Resources — The database represents delineations of aspen stands associated with stand assessment data (PLUMAS_NF_FEATHERRIVER_PTS) collected in aspen stands in the Plumas...

  9. Deviations in delineated GTV caused by artefacts in 4DCT

    DEFF Research Database (Denmark)

    Persson, Gitte Fredberg; Nygaard, Ditte Eklund; Brink, Carsten;

    2010-01-01

    BACKGROUND AND PURPOSE: Four-dimensional computed tomography (4DCT) is used for breathing-adapted radiotherapy planning. Irregular breathing, large tumour motion or interpolation of images can cause artefacts in the 4DCT. This study evaluates the impact of artefacts on gross tumour volume (GTV......) size. MATERIAL AND METHODS: In 19 4DCT scans of patients with peripheral lung tumours, GTV was delineated in all bins. Variations in GTV size between bins in each 4DCT scan were analysed and correlated to tumour motion and variations in breathing signal amplitude and breathing signal period. End......-expiration GTV size (GTVexp) was considered as reference for GTV size. Intra-session delineation error was estimated by re-delineation of GTV in eight of the 4DCT scans. RESULTS: In 16 of the 4DCT scans the maximum deviations from GTVexp were larger than could be explained by delineation error. The deviations...

  10. Remote sensing application for delineating coastal vegetation - A case study

    Digital Repository Service at National Institute of Oceanography (India)

    Kunte, P.D.; Wagle, B.G.

    Remote sensing data has been used for mapping coastal vegetation along the Goa Coast, India. The study envisages the use of digital image processing techniques for delineating geomorphic features and associated vegetation, including mangrove, along...

  11. Comparison of stochastic and regression based methods for quantification of predictive uncertainty of model-simulated wellhead protection zones in heterogeneous aquifers

    DEFF Research Database (Denmark)

    Christensen, Steen; Moore, C.; Doherty, J.

    2006-01-01

    For a synthetic case we computed three types of individual prediction intervals for the location of the aquifer entry point of a particle that moves through a heterogeneous aquifer and ends up in a pumping well. (a) The nonlinear regression-based interval (Cooley, 2004) was found to be nearly...

  12. Case study for delineating a contributing area to a well in a fractured siliciclastic-bedrock aquifer near Lansdale, Pennsylvania

    Science.gov (United States)

    Barton, Gary J.; Risser, Dennis W.; Galeone, Daniel G.; Goode, Daniel J.

    2003-01-01

    supported the evidence that shallow fractures probably contribute significant amounts of water to well MG-1125. The large contribution of water from shallow fractures indicates that the area providing part of the recharge to the well is not far removed from the wellhead. Preliminary delineations of the contributing area and the 100-day time-of travel area were computed from a water budget and time-of-travel equation. These delineations provided insight into the size (but not the shape) of the contributing areas. Three other approaches were used and results compared: (1) uniform-flow equation, (2) hydrogeologic mapping, and (3) numerical modeling. The uniform-flow equation predicted a contributing area that seemed unrealistic?extending far across the ground-water divide into an adjacent watershed. Hydrogeologic mapping, if used with the potentiometric surface and constrained by the water budget, produced contributing area that was similar to that from numerical modeling. Numerical modeling allowed the incorporation of anisotropy caused by dipping water-producing units, differing transmissivity values of geologic units, and ground-water withdrawals from nearby supply wells. The numerical modeling showed that groundwater withdrawals from nearby supply wells affected the contributing area to supply well MG-1125 but had less effect on the 100-day time-of-travel area.

  13. Transit Traffic Analysis Zone Delineating Method Based on Thiessen Polygon

    Directory of Open Access Journals (Sweden)

    Shuwei Wang

    2014-04-01

    Full Text Available A green transportation system composed of transit, busses and bicycles could be a significant in alleviating traffic congestion. However, the inaccuracy of current transit ridership forecasting methods is imposing a negative impact on the development of urban transit systems. Traffic Analysis Zone (TAZ delineating is a fundamental and essential step in ridership forecasting, existing delineating method in four-step models have some problems in reflecting the travel characteristics of urban transit. This paper aims to come up with a Transit Traffic Analysis Zone delineation method as supplement of traditional TAZs in transit service analysis. The deficiencies of current TAZ delineating methods were analyzed, and the requirements of Transit Traffic Analysis Zone (TTAZ were summarized. Considering these requirements, Thiessen Polygon was introduced into TTAZ delineating. In order to validate its feasibility, Beijing was then taken as an example to delineate TTAZs, followed by a spatial analysis of office buildings within a TTAZ and transit station departure passengers. Analysis result shows that the TTAZs based on Thiessen polygon could reflect the transit travel characteristic and is of in-depth research value.

  14. Integrated TLWP-FPSO (Tension Leg Wellhead Platform-Floating Production, Storage and Offloading Vessel) solution for deep water field development offshore Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Neil; Heidari, Homayoun; Large, Sean [SBM Atlantia, Houston, TX (United States)

    2008-07-01

    A development strategy for some deep water fields offshore Brazil consists of a TLWP (Tension-Leg Wellhead Platform) connected by a fluid transfer line to a nearby FPSO. The TLWP provides dry tree riser support, drilling capability, manifolding, test separation, and multiphase pumping, while all other functions including full processing, accommodations, gas compression, power generation, water and chemical injection, storage and offloading, and gas export are provided by the FPSO. In one such scenario, the TLWP and FPSO could be connected using SBM's GAP mid-water fluid transfer line technology, with SBM Atlantia's FourStar{sup TM} hull concept for the TLWP. The FourStar{sup TM} is designed to be quayside- or float over-integrable, thus eliminating the need for a heavy lift installation vessel; while being structurally and hydrodynamically superior to other TLP alternatives. This paper presents a description of the technical development of the FourStar{sup TM} TLP and an overview of the GAP technology, and discusses the characteristics of an integrated TLWP-GAP-FPSO field development solution for a typical application offshore Brazil (author)

  15. Fire protection design criteria

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-03-01

    This Standard provides supplemental fire protection guidance applicable to the design and construction of DOE facilities and site features (such as water distribution systems) that are also provided for fire protection. It is intended to be used in conjunction with the applicable building code, national Fire Protection Association Codes and Standards, and any other applicable DOE construction criteria. This Standard, along with other delineated criteria, constitutes the basic criteria for satisfying DOE fire and life safety objectives for the design and construction or renovation of DOE facilities.

  16. Delineation of Crystalline Extended Defects on Multicrystalline Silicon Wafers

    Directory of Open Access Journals (Sweden)

    Mohamed Fathi

    2007-01-01

    Full Text Available We have selected Secco and Yang etch solutions for the crystalline defect delineation on multicrystalline silicon (mc-Si wafers. Following experimentations and optimization of Yang and Secco etching process parameters, we have successfully revealed crystalline extended defects on mc-Si surfaces. A specific delineation process with successive application of Yang and Secco agent on the same sample has proved the increased sensitivity of Secco etch to crystalline extended defects in mc-Si materials. The exploration of delineated mc-Si surfaces indicated that strong dislocation densities are localized mainly close to the grain boundaries and on the level of small grains in size (below 1 mm. Locally, we have observed the formation of several parallel dislocation lines, perpendicular to the grain boundaries. The overlapping of several dislocations lines has revealed particular forms for etched pits of dislocations.

  17. Interobserver delineation variation in lung tumour stereotacticbody radiotherapy

    DEFF Research Database (Denmark)

    Persson, G. F.; Nygaard, D. E.; Hollensen, Christian;

    2012-01-01

    Objectives In radiotherapy, delineation uncertainties are important as they contribute to systematic errors and can lead to geographical miss of the target. For margin computation, standard deviations (SDs) of all uncertainties must be included as SDs. The aim of this study was to quantify...... the interobserver delineation variation for stereotactic body radiotherapy (SBRT) of peripheral lung tumours using a cross-sectional study design. Methods 22 consecutive patients with 26 tumours were included. Positron emission tomography/CT scans were acquired for planning of SBRT. Three oncologists and three...

  18. 12 CFR 228.41 - Assessment area delineation.

    Science.gov (United States)

    2010-01-01

    ....41 Banks and Banking FEDERAL RESERVE SYSTEM (CONTINUED) BOARD OF GOVERNORS OF THE FEDERAL RESERVE SYSTEM COMMUNITY REINVESTMENT (REGULATION BB) Records, Reporting, and Disclosure Requirements § 228.41..., but the Board reviews the delineation for compliance with the requirements of this section. (b...

  19. The Regionalization of Africa: Delineating Africa's Subregions Using Airline Data

    Science.gov (United States)

    Good, Pieter R.; Derudder, Ben; Witlox, Frank J.

    2011-01-01

    Current regionalizations of Africa have limitations in that they are attribute-based and regions are delineated according to national boundaries. Taking the world city network approach as starting point, it is possible to use relational data (i.e., information about the relationships between cities) rather than attribute data, and moreover, it…

  20. Crowdsourcing for error detection in cortical surface delineations

    DEFF Research Database (Denmark)

    Ganz, Melanie; Kondermann, Daniel; Andrulis, Jonas

    2017-01-01

    crowdsourcing platform were asked to annotate errors in automatic cortical surface delineations on 100 central, coronal slices of MR images. RESULTS: On average, annotations for 100 images were obtained in less than an hour. When using expert annotations as reference, the crowd on average achieves a sensitivity...

  1. Delineating psychomotor slowing from reduced processing speed in schizophrenia

    NARCIS (Netherlands)

    Morrens, M.; Hulstijn, W.; Matton, C.; Madani, Y.; Bouwel, L. van; Peuskens, J.; Sabbe, B.G.C.

    2008-01-01

    Introduction. Psychomotor slowing is an intrinsic feature of schizophrenia that is poorly delineated from generally reduced processing speed. Although the Symbol Digit Substitution Test (SDST) is widely used to assess psychomotor speed, the task also taps several higher-order cognitive processes. Re

  2. Dynamic Stereochemistry: A Simple Approach to Delineating Relative Configuration

    Science.gov (United States)

    Mandal, Dipak K.

    2007-01-01

    A simple approach for delineating the stereochemistry of the products relative to that of the reactants in reactions involving stereogenic centers is addressed. The reaction at the tetrahedral center involves the cleavage of a bond to one of the ligands in the reactant and the resulting new ligand in the product is labeled by affixing prime to the…

  3. Further delineation of the hypotrichosis-deafness syndrome.

    NARCIS (Netherlands)

    Steensel, M.A.M. van; Geel, M. van; Steijlen, P.M.

    2005-01-01

    We recently delineated a novel disorder characterized by hypotrichosis, nail dystrophy and sensorineural deafness and caused by a missense mutation in GJB2 (connexin26). The patient, a girl, was two years old when we first saw her. We had the opportunity to re-examine her at four years of age and fo

  4. Automated delineation of stroke lesions using brain CT images

    Directory of Open Access Journals (Sweden)

    Céline R. Gillebert

    2014-01-01

    Full Text Available Computed tomographic (CT images are widely used for the identification of abnormal brain tissue following infarct and hemorrhage in stroke. Manual lesion delineation is currently the standard approach, but is both time-consuming and operator-dependent. To address these issues, we present a method that can automatically delineate infarct and hemorrhage in stroke CT images. The key elements of this method are the accurate normalization of CT images from stroke patients into template space and the subsequent voxelwise comparison with a group of control CT images for defining areas with hypo- or hyper-intense signals. Our validation, using simulated and actual lesions, shows that our approach is effective in reconstructing lesions resulting from both infarct and hemorrhage and yields lesion maps spatially consistent with those produced manually by expert operators. A limitation is that, relative to manual delineation, there is reduced sensitivity of the automated method in regions close to the ventricles and the brain contours. However, the automated method presents a number of benefits in terms of offering significant time savings and the elimination of the inter-operator differences inherent to manual tracing approaches. These factors are relevant for the creation of large-scale lesion databases for neuropsychological research. The automated delineation of stroke lesions from CT scans may also enable longitudinal studies to quantify changes in damaged tissue in an objective and reproducible manner.

  5. The Regionalization of Africa: Delineating Africa's Subregions Using Airline Data

    Science.gov (United States)

    Good, Pieter R.; Derudder, Ben; Witlox, Frank J.

    2011-01-01

    Current regionalizations of Africa have limitations in that they are attribute-based and regions are delineated according to national boundaries. Taking the world city network approach as starting point, it is possible to use relational data (i.e., information about the relationships between cities) rather than attribute data, and moreover, it…

  6. Delineation of nuclear structures in 3D multicellular systems

    Energy Technology Data Exchange (ETDEWEB)

    2013-09-13

    A pipeline, implemented within the Insight Segmentation and Registration Toolkit (ITK) and The Visualization Toolkit (VTK) framework, to delineate each nucleus and to profile morphometric and colony organization. At an abstract level, our approach is an extension of a previously developed method for monolayer call structure models.

  7. Delineating psychomotor slowing from reduced processing speed in schizophrenia

    NARCIS (Netherlands)

    Morrens, M.; Hulstijn, W.; Matton, C.; Madani, Y.; Bouwel, L. van; Peuskens, J.; Sabbe, B.G.C.

    2008-01-01

    Introduction. Psychomotor slowing is an intrinsic feature of schizophrenia that is poorly delineated from generally reduced processing speed. Although the Symbol Digit Substitution Test (SDST) is widely used to assess psychomotor speed, the task also taps several higher-order cognitive processes.

  8. Water Sources and Their Protection from the Impact of Microbial Contamination in Rural Areas of Beijing, China

    Directory of Open Access Journals (Sweden)

    Hairong Li

    2013-03-01

    Full Text Available Bacterial contamination of drinking water is a major public health problem in rural China. To explore bacterial contamination in rural areas of Beijing and identify possible causes of bacteria in drinking water samples, water samples were collected from wells in ten rural districts of Beijing, China. Total bacterial count, total coliforms and Escherichia coli in drinking water were then determined and water source and wellhead protection were investigated. The bacterial contamination in drinking water was serious in areas north of Beijing, with the total bacterial count, total coliforms and Escherichia coli in some water samples reaching 88,000 CFU/mL, 1,600 MPN/100 mL and 1,600 MPN/100 mL, respectively. Water source types, well depth, whether the well was adequately sealed and housed, and whether wellhead is above or below ground were the main factors influencing bacterial contamination levels in drinking water. The bacterial contamination was serious in the water of shallow wells and wells that were not closed, had no well housing or had a wellhead below ground level. The contamination sources around wells, including village dry toilets and livestock farms, were well correlated with bacterial contamination. Total bacterial counts were affected by proximity to sewage ditches and polluting industries, however, proximity to landfills did not influence the microbial indicators.

  9. Flow Routing for Delineating Supraglacial Meltwater Channel Networks

    Directory of Open Access Journals (Sweden)

    Leonora King

    2016-12-01

    Full Text Available Growing interest in supraglacial channels, coupled with the increasing availability of high-resolution remotely sensed imagery of glacier surfaces, motivates the development and testing of new approaches to delineating surface meltwater channels. We utilized a high-resolution (2 m digital elevation model of parts of the western margin of the Greenland Ice Sheet (GrIS and retention of visually identified sinks (i.e., moulins to investigate the ability of a standard D8 flow routing algorithm to delineate supraglacial channels. We compared these delineated channels to manually digitized channels and to channels extracted from multispectral imagery. We delineated GrIS supraglacial channel networks in six high-elevation (above 1000 m and one low-elevation (below 1000 m catchments during and shortly after peak melt (July and August 2012, and investigated the effect of contributing area threshold on flow routing performance. We found that, although flow routing is sensitive to data quality and moulin identification, it can identify 75% to 99% of channels observed with multispectral analysis, as well as low-order, high-density channels (up to 15.7 km/km2 with a 0.01 km2 contributing area threshold in greater detail than multispectral methods. Additionally, we found that flow routing can delineate supraglacial channel networks on rough ice surfaces with widespread crevassing. Our results suggest that supraglacial channel density is sufficiently high during peak melt that low contributing area thresholds can be employed with little risk of overestimating the channel network extent.

  10. Locoregional extension patterns of nasopharyngeal carcinoma and suggestions for clinical target volume delineation

    Institute of Scientific and Technical Information of China (English)

    Wen-Fei Li; Jun Ma; Ying Sun; Mo Chen; Ling-Long Tang; Li-Zhi Liu; Yan-Ping Mao; Lei Chen; Guan-Qun Zhou; Li Li

    2012-01-01

    Clinical target volume (CTV) delineation is crucial for tumor control and normal tissue protection.This study aimed to define the Iocoregional extension patterns of nasopharyngeal carcinoma (NPC) and to improve CTV delineation.Magnetic resonance imaging scans of 2366 newly diagnosed NPC patients were reviewed.According to incidence rates of tumor invasion,the anatomic sites surrounding the nasopharynx were classified into high-risk (>30%),medium-risk (5%-30%),and low-risk (<5%) groups.The lymph node (LN) level was determined according to the Radiation Therapy Oncology Group guidelines,which were further categorized into the upper neck (retropharyngeal region and level Ⅱ),middle neck (levels Ⅲ and Va),and lower neck (levels IV and Vb and the supraclavicular fossa).The high-risk anatomic sites were adjacent to the nasopharynx,whereas those at medium-or low-risk were separated from the nasopharynx.If the high-risk anatomic sites were involved,the rates of tumor invasion into the adjacent medium-risk sites increased; if not,the rates were significantly lower (P < 0.01).Among the 1920 (81.1%) patients with positive LN,the incidence rates of LN metastasis in the upper,middle,and lower neck were 99.6%,30.2%,and 7.2%,respectively,and skip metastasis happened in only 1.2% of patients.In the 929 patients who had unilateral upper neck involvement,the rates of contralateral middle neck and lower neck involvement were 1.8% and 0.4%,respectively.Thus,local disease spreads stepwise from proximal sites to distal sites,and LN metastasis spreads from the upper neck to the lower neck.Individualized CTV delineation for NPC may be feasible.

  11. Studies on Impacts of Diluting Parameters on Wellhead Pressure of Heavy Oil Production Wells Assisted with Light Oil%稠油掺稀井掺稀参数对井口压力的影响研究

    Institute of Scientific and Technical Information of China (English)

    柳文莉; 韩国庆; 吴晓东; 朱明; 罗佳洁; 丁洪坤

    2011-01-01

    According to four diluting parameters affecting heavy oil production assisted with light oil-diluting amount. diluting relative density, diluting temperature and diluting depth, analysis on the impacts of diluting parameters of wellhead pressure using multi-element non-linear regression regression method is presented. The results show that the wellhead pressure increases as the increasement of diluting amount. diluting temperature and diluting depth and decreases as the increasement of the relative diluting density. Diluting amount makes the greatest impact on wellhead pressure, diluting temperature , diluting depth and relative diluting density' s impact is smaller.%针对影响稠油掺稀降黏的四种掺稀参数——掺稀量、掺稀相对密度、掺稀温度及掺稀深度,采用多元二次非线性回归方法研究了它们对稠油掺稀井井口压力的影响规律并进行了分析.结果表明:井口压力随着掺稀量、掺稀相对密度、掺稀温度及掺稀深度呈线性变化趋势,随着掺稀量、掺稀温度及掺稀深度的增加而增加,随着掺稀相对密度的增加而降低.掺稀量对井口压力的影响最大,而对掺稀相对密度、掺稀温度及掺稀深度的影响相对小些.

  12. Delineation of a clinical syndrome caused by mosaic trisomy 15

    Energy Technology Data Exchange (ETDEWEB)

    Buehler, E.M.; Bienz, G.; Straumann, E.; Bosceh, N. [Univ. Children`s Hospital, Basel (Switzerland)

    1996-03-15

    We report on a boy with mosaic trisomy 15. The clinical manifestations are compared with those of the few cases reported up to now. A clinical syndrome is delineated consisting of a characteristic shape of the nose and other minor craniofacial anomalies, as well as typical deformities of the hands and feet. Different degrees of mosaicism may explain the more or less severe manifestations in individual patients. 10 refs., 4 figs., 1 tab.

  13. Methods for Data-based Delineation of Spatial Regions

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, John E.

    2012-10-01

    In data analysis, it is often useful to delineate or segregate areas of interest from the general population of data in order to concentrate further analysis efforts on smaller areas. Three methods are presented here for automatically generating polygons around spatial data of interest. Each method addresses a distinct data type. These methods were developed for and implemented in the sample planning tool called Visual Sample Plan (VSP). Method A is used to delineate areas of elevated values in a rectangular grid of data (raster). The data used for this method are spatially related. Although VSP uses data from a kriging process for this method, it will work for any type of data that is spatially coherent and appears on a regular grid. Method B is used to surround areas of interest characterized by individual data points that are congregated within a certain distance of each other. Areas where data are “clumped” together spatially will be delineated. Method C is used to recreate the original boundary in a raster of data that separated data values from non-values. This is useful when a rectangular raster of data contains non-values (missing data) that indicate they were outside of some original boundary. If the original boundary is not delivered with the raster, this method will approximate the original boundary.

  14. Ground-Water Capture Zone Delineation of Hypothetical Systems: Methodology Comparison and Real-World Applications

    Science.gov (United States)

    Ahern, J. A.; Lilly, M. R.; Hinzman, L. D.

    2003-12-01

    A capture zone is the aquifer volume through which ground-water flows to a pumping well over a given time of travel. Determining a well's capture zone aids in water-supply management by creating an awareness of the water source. This helps ensure sustainable pumping operations and outlines areas where protection from contamination is critical. We are delineating the capture zones of hypothetical conceptual models that resemble the Fairbanks, Alaska floodplain both in aquifer parameters and boundary conditions. We begin with a very simple hydrogeologic system and gradually add complexity such as heterogeneity, anisotropy, multiple wells, and zones of permafrost. Commonly-used delineation methods are applied to each case. These include calculated fixed-radius, analytical and numerical models. The calculated fixed-radius method uses a mathematical equation with several simplifying assumptions. Analytical techniques employ a series of equations that likewise assume simple conditions, although to a lesser degree than the fixed-radius method. Our chosen numerical model is MODFLOW-2000, which offers a particle-tracking package (MODPATH) for delineating recharge areas. The delineations are overlayed for each conceptual model in order to compare the capture zones produced by the different methods. Contrasts between capture zones increase with the complexity of the hydrogeology. Simpler methods are restricted by their underlying assumptions. When methods can no longer account for complexities in the conceptual model, the resulting delineations remain similar to those of simpler models. Meanwhile, the zones generated by more sophisticated methods are able to change with changes to the conceptual model. Hence, the simpler methods now lack accuracy and credibility. We have found that these simpler techniques tend to overestimate the capture zone. Water-supply managers must consider such inaccuracies when evaluating the costs of each method. In addition to comparing delineation

  15. 75 FR 37245 - 2010 Standards for Delineating Metropolitan and Micropolitan Statistical Areas

    Science.gov (United States)

    2010-06-28

    ...(b) is used in a much more limited fashion, only applying that criterion to those potential... estimates. The urbanized areas and urban clusters used in the 2018 update will be those delineated with 2010... delineated urbanized area of at least 50,000 population or a Census Bureau delineated urban cluster of...

  16. PET functional volume delineation: a robustness and repeatability study

    Energy Technology Data Exchange (ETDEWEB)

    Hatt, Mathieu [CHU Morvan, INSERM, U650, LaTIM, Brest (France); CHU MORVAN, LaTIM, INSERM U650, Brest (France); Cheze-le Rest, Catherine [CHU Morvan, INSERM, U650, LaTIM, Brest (France); CHU, Academic Department of Nuclear Medicine, Brest (France); Albarghach, Nidal; Pradier, Olivier [CHU Morvan, INSERM, U650, LaTIM, Brest (France); CHU, Institute of Oncology, Brest (France); Visvikis, Dimitris [CHU Morvan, INSERM, U650, LaTIM, Brest (France)

    2011-04-15

    Current state-of-the-art algorithms for functional uptake volume segmentation in PET imaging consist of threshold-based approaches, whose parameters often require specific optimization for a given scanner and associated reconstruction algorithms. Different advanced image segmentation approaches previously proposed and extensively validated, such as among others fuzzy C-means (FCM) clustering, or fuzzy locally adaptive bayesian (FLAB) algorithm have the potential to improve the robustness of functional uptake volume measurements. The objective of this study was to investigate robustness and repeatability with respect to various scanner models, reconstruction algorithms and acquisition conditions. Robustness was evaluated using a series of IEC phantom acquisitions carried out on different PET/CT scanners (Philips Gemini and Gemini Time-of-Flight, Siemens Biograph and GE Discovery LS) with their associated reconstruction algorithms (RAMLA, TF MLEM, OSEM). A range of acquisition parameters (contrast, duration) and reconstruction parameters (voxel size) were considered for each scanner model, and the repeatability of each method was evaluated on simulated and clinical tumours and compared to manual delineation. For all the scanner models, acquisition parameters and reconstruction algorithms considered, the FLAB algorithm demonstrated higher robustness in delineation of the spheres with low mean errors (10%) and variability (5%), with respect to threshold-based methodologies and FCM. The repeatability provided by all segmentation algorithms considered was very high with a negligible variability of <5% in comparison to that associated with manual delineation (5-35%). The use of advanced image segmentation algorithms may not only allow high accuracy as previously demonstrated, but also provide a robust and repeatable tool to aid physicians as an initial guess in determining functional volumes in PET. (orig.)

  17. Origami: Delineating Cosmic Structures with Phase-Space Folds

    Science.gov (United States)

    Neyrinck, Mark C.; Falck, Bridget L.; Szalay, Alex S.

    2015-01-01

    Structures like galaxies and filaments of galaxies in the Universe come about from the origami-like folding of an initially flat three-dimensional manifold in 6D phase space. The ORIGAMI method identifies these structures in a cosmological simulation, delineating the structures according to their outer folds. Structure identification is a crucial step in comparing cosmological simulations to observed maps of the Universe. The ORIGAMI definition is objective, dynamical and geometric: filament, wall and void particles are classified according to the number of orthogonal axes along which dark-matter streams have crossed. Here, we briefly review these ideas, and speculate on how ORIGAMI might be useful to find cosmic voids.

  18. Regional Geochemical Division-A Tool for Delineating Geochemical Block

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Regional geochemical division is a mapping technique to divide an area into slices where the associations between geochemical elements are relatively simple and uniform. The result of division is expressed on a 2-D map. The scheme of regional geochemical division includes non-supervised pattern recognition, elementary statistics and factor analysis. A practical example in a gold prospecting area in Jilin, China, and the corresponding explanation are presented. Regional geochemical division is a basic approach to the delineation of the geochemical blocks as well.

  19. Fluorescence polarization imaging for delineating nonmelanoma skin cancers

    Science.gov (United States)

    Yaroslavsky, A. N.; Neel, V.; Anderson, R. R.

    2004-09-01

    We present a method for detecting nonmelanoma skin cancers using exogenous fluorescence polarization. We built an automated system that permits exogenous fluorescence polarization imaging. It includes a tunable linearly polarized monochromatic light source and a CCD camera equipped with a rotating linear polarizer and a filter to reject excitation light. Two fluorophores that are retained in tumors, toluidine blue and methylene blue, are employed. We demonstrate that fluorescence polarization imaging can be used for accurate delineation of nonmelanoma cancers. The results suggest that this optical technique may be suitable for real-time noninvasive demarcation of epithelial cancers.

  20. ORIGAMI: Delineating Cosmic Structures with Phase-Space Folds

    CERN Document Server

    Neyrinck, Mark C; Szalay, Alex S

    2013-01-01

    Structures like galaxies and filaments of galaxies in the Universe come about from the origami-like folding of an initially flat three-dimensional manifold in 6D phase space. The ORIGAMI method identifies these structures in a cosmological simulation, delineating the structures according to their outer folds. Structure identification is a crucial step in comparing cosmological simulations to observed maps of the Universe. The ORIGAMI definition is objective, dynamical and geometric: filament, wall and void particles are classified according to the number of orthogonal axes along which dark-matter streams have crossed. Here, we briefly review these ideas, and speculate on how ORIGAMI might be useful to find cosmic voids.

  1. Protection strategies for drinking groundwater sources in small Quebec municipalities.

    Science.gov (United States)

    Sylvestre, Bruno; Rodriguez, Manuel J

    2008-07-01

    Awareness of groundwater protection has increased substantially in recent decades. In the Province of Quebec, Canada, the Groundwater Catchment Regulation (GWCR) was promulgated in 2002 to protect water quality in public wells. The goal of the present study was to document groundwater protection in the context of emerging regulations and identify factors explaining the propensity of municipalities applying protection strategies. Two types of information were used in this study: data from a questionnaire-based survey conducted among 665 municipalities in the Province of Quebec and complementary information gathered from various sources. Data from the survey revealed that fewer than half of the municipalities have been able to comply with the GWCR, mainly because of financial limitations. Also, close to half of the municipalities have either identified or are expecting land use conflicts to arise between protection areas required by the GWCR and other land usage, with agriculture being the main conflicting activity. Multivariate logistic regression models served to identify factors explaining the likelihood of municipalities to take groundwater protection measures. Those factors were municipality revenue, history of water contamination in distribution systems, land use near wellheads, location of municipalities within a provincial priority watershed and the importance of groundwater use in a region. Results of the study may prove helpful for government authorities in better understanding the groundwater protection issue and in implementing strategies that improve the ability of municipalities to protect groundwater.

  2. Molecular delineation of species in the coral holobiont.

    Science.gov (United States)

    Stat, Michael; Baker, Andrew C; Bourne, David G; Correa, Adrienne M S; Forsman, Zac; Huggett, Megan J; Pochon, Xavier; Skillings, Derek; Toonen, Robert J; van Oppen, Madeleine J H; Gates, Ruth D

    2012-01-01

    The coral holobiont is a complex assemblage of organisms spanning a diverse taxonomic range including a cnidarian host, as well as various dinoflagellate, prokaryotic and acellular symbionts. With the accumulating information on the molecular diversity of these groups, binomial species classification and a reassessment of species boundaries for the partners in the coral holobiont is a logical extension of this work and will help enhance the capacity for comparative research among studies. To aid in this endeavour, we review the current literature on species diversity for the three best studied partners of the coral holobiont (coral, Symbiodinium, prokaryotes) and provide suggestions for future work on systematics within these taxa. We advocate for an integrative approach to the delineation of species using both molecular genetics in combination with phenetic characters. We also suggest that an a priori set of criteria be developed for each taxonomic group as no one species concept or accompanying set of guidelines is appropriate for delineating all members of the coral holobiont. Copyright © 2012 Elsevier Ltd. All rights reserved.

  3. Delineating Biophysical Environments of the Sunda Banda Seascape, Indonesia

    Directory of Open Access Journals (Sweden)

    Mingshu Wang

    2015-01-01

    Full Text Available The Sunda Banda Seascape (SBS, located in the center of the Coral Triangle, is a global center of marine biodiversity and a conservation priority. We proposed the first biophysical environmental delineation of the SBS using globally available satellite remote sensing and model-assimilated data to categorize this area into unique and meaningful biophysical classes. Specifically, the SBS was partitioned into eight biophysical classes characterized by similar sea surface temperature, chlorophyll a concentration, currents, and salinity patterns. Areas within each class were expected to have similar habitat types and ecosystem functions. Our work supplemented prevailing global marine management schemes by focusing in on a regional scale with finer spatial resolution. It also provided a baseline for academic research, ecological assessments and will facilitate marine spatial planning and conservation activities in the area. In addition, the framework and methods of delineating biophysical environments we presented can be expanded throughout the whole Coral Triangle to support research and conservation activities in this important region.

  4. Internal and external validation of an ESTRO delineation guideline

    DEFF Research Database (Denmark)

    Eldesoky, Ahmed R.; Yates, Esben Svitzer; Nyeng, Tine B

    2016-01-01

    Background and purpose To internally and externally validate an atlas based automated segmentation (ABAS) in loco-regional radiation therapy of breast cancer. Materials and methods Structures of 60 patients delineated according to the ESTRO consensus guideline were included in four categorized mu......-regional radiation therapy in a multi-institutional setting. However, manual correction of some structures is important before clinical use. The ABAS is now available for routine clinical use in Danish patients. © 2016 Elsevier Ireland Ltd......Background and purpose To internally and externally validate an atlas based automated segmentation (ABAS) in loco-regional radiation therapy of breast cancer. Materials and methods Structures of 60 patients delineated according to the ESTRO consensus guideline were included in four categorized...... and axillary nodal levels and poor agreement for interpectoral, internal mammary nodal regions and LADCA. Correcting ABAS significantly improved all the results. External validation of ABAS showed comparable results. Conclusions ABAS is a clinically useful tool for segmenting structures in breast cancer loco...

  5. 井口称重式计量系统在油田的应用%The Application of Wellhead Weighing Metering System in Oilfield

    Institute of Scientific and Technical Information of China (English)

    李艾萤; 李秋莲; 张岳峰; 李秋香

    2016-01-01

    Put forward the "car tank storage transport" converted into pipeline technology, single- well measurement will become a key technology for pipeline transporting. Wellhead weighing metering system is mainly composed of single well entry line, multichannel valve, weighing sensor, left or right position sensor, tanks, oil and gas separator, single well gas export pipeline, hopper, distributor, skip, float controller, single well pipeline, single well flow export pipeline, etc. Metering system is added a full automatic multi-channel valve on the device, can access to ≤30 single-well respectively, through the computer to realize automatic switching of single well, continuous measurement of each single well pro-duced fluid volume, skip position sensor, automatic detection, recording, printing, dis-play operation parameters of each single well production,which can realize continuous auto-matic metering oil. The metering system can well solve the high viscosity of heavy oil and low oil and gas ratio single well oil well measurement problem,also can meet the thin oil and high oil and gas than single well oil well measurement at the same time,and has wide applica-bility.%自提出将“罐储车运”的原油输送方式改造成管道输送的工艺,单井计量就成为实现管输的关键性技术。井口称重式计量系统主要由单井入口管路、多路阀、称重传感器、左位置传感器、右位置传感器、罐体、油气分离器、单井气出口管路、集料斗、分布器、翻斗、浮子调节器、单井出口管路、单井汇流出口管路等组成。计量系统设置了一个全自动多路阀,最多可以接入30口单井,通过计算机实现单井的自动切换,连续测量每个单井的产液量。位置传感器检测翻斗的状态,自动检测、记录、打印、显示各单井的生产运行参数,可实现连续自动量油。该计量系统能较好地解决高黏度稠油和低油气比油井的单井计量

  6. Recommendations for the delineation of organs at risk in ENT radiotherapy; Recommandations de delineation des organes a risque en radiotherapie ORL

    Energy Technology Data Exchange (ETDEWEB)

    Ali, D.; Halimi, P.; Berges, O.; Deberne, M.; Botti, M.; Giraud, P. [Hopital europeen Georges-Pompidou, Paris (France); Servagi-Vernat, S. [CHUjean-Minjoz, Besancon (France)

    2011-10-15

    Based on a literature survey, the authors propose recommendations for the delineation of the pharyngeal constrictor muscles, inner ear, larynx, buccal cavity, and temporomandibular joint. These recommendations of delineation of organs at risk are related to the functional anatomy of the considered structures, and correspond to volumes used in published surveys on dose-volume toxicity. They are simple and reproducible. Short communication

  7. Delineating riparian zones for entire river networks using geomorphological criteria

    Directory of Open Access Journals (Sweden)

    D. Fernández

    2012-03-01

    Full Text Available Riparian zone delineation is a central issue for riparian and river ecosystem management, however, criteria used to delineate them are still under debate. The area inundated by a 50-yr flood has been indicated as an optimal hydrological descriptor for riparian areas. This detailed hydrological information is, however, not usually available for entire river corridors, and is only available for populated areas at risk of flooding. One of the requirements for catchment planning is to establish the most appropriate location of zones to conserve or restore riparian buffer strips for whole river networks. This issue could be solved by using geomorphological criteria extracted from Digital Elevation Models. In this work we have explored the adjustment of surfaces developed under two different geomorphological criteria with respect to the flooded area covered by the 50-yr flood, in an attempt to rapidly delineate hydrologically-meaningful riparian zones for entire river networks. The first geomorphological criterion is based on the surface that intersects valley walls at a given number of bankfull depths above the channel (BFDAC, while the second is based on the surface defined by a~threshold value indicating the relative cost of moving from the stream up to the valley, accounting for slope and elevation change (path distance. As the relationship between local geomorphology and 50-yr flood has been suggested to be river-type dependant, we have performed our analyses distinguishing between three river types corresponding with three valley morphologies: open, shallow vee and deep vee valleys (in increasing degree of valley constrainment. Adjustment between the surfaces derived from geomorphological and hydrological criteria has been evaluated using two different methods: one based on exceeding areas (minimum exceeding score and the other on the similarity among total area values. Both methods have pointed out the same surfaces when looking for those that

  8. A probabilistic approach to delineating functional brain regions

    DEFF Research Database (Denmark)

    Kalbitzer, Jan; Svarer, Claus; Frokjaer, Vibe G

    2009-01-01

    The purpose of this study was to develop a reliable observer-independent approach to delineating volumes of interest (VOIs) for functional brain regions that are not identifiable on structural MR images. The case is made for the raphe nuclei, a collection of nuclei situated in the brain stem known...... to be densely packed with serotonin transporters (5-hydroxytryptaminic [5-HTT] system). METHODS: A template set for the raphe nuclei, based on their high content of 5-HTT as visualized in parametric (11)C-labeled 3-amino-4-(2-dimethylaminomethyl-phenylsulfanyl)-benzonitrile PET images, was created for 10...... healthy subjects. The templates were subsequently included in the region sets used in a previously published automatic MRI-based approach to create an observer- and activity-independent probabilistic VOI map. The probabilistic map approach was tested in a different group of 10 subjects and compared...

  9. ORIGAMI: Delineating Halos using Phase-Space Folds

    CERN Document Server

    Falck, Bridget L; Szalay, Alexander S

    2012-01-01

    We present the ORIGAMI method of identifying structures, particularly halos, in cosmological N-body simulations. Structure formation can be thought of as the folding of an initially flat three-dimensional manifold in six-dimensional phase space. ORIGAMI finds the outer folds that delineate these structures. Halo particles are identified as those that have undergone shell-crossing along 3 orthogonal axes, providing a dynamical definition of halo regions that is independent of density. ORIGAMI also identifies other morphological structures: particles that have undergone shell-crossing along 2, 1, or 0 orthogonal axes correspond to filaments, walls, and voids respectively. We compare this method to a standard Friends-of-Friends halo-finding algorithm and find that ORIGAMI halos are somewhat larger, more diffuse, and less spherical, though the global properties of ORIGAMI halos are in good agreement with other modern halo-finding algorithms.

  10. ORIGAMI: DELINEATING HALOS USING PHASE-SPACE FOLDS

    Energy Technology Data Exchange (ETDEWEB)

    Falck, Bridget L.; Neyrinck, Mark C.; Szalay, Alexander S. [Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 (United States)

    2012-08-01

    We present the ORIGAMI method of identifying structures, particularly halos, in cosmological N-body simulations. Structure formation can be thought of as the folding of an initially flat three-dimensional manifold in six-dimensional phase space. ORIGAMI finds the outer folds that delineate these structures. Halo particles are identified as those that have undergone shell-crossing along three orthogonal axes, providing a dynamical definition of halo regions that is independent of density. ORIGAMI also identifies other morphological structures: particles that have undergone shell-crossing along 2, 1, or 0 orthogonal axes correspond to filaments, walls, and voids, respectively. We compare this method to a standard friends-of-friends halo-finding algorithm and find that ORIGAMI halos are somewhat larger, more diffuse, and less spherical, though the global properties of ORIGAMI halos are in good agreement with other modern halo-finding algorithms.

  11. Delineation of eco—geographic regional system of China

    Institute of Scientific and Technical Information of China (English)

    WUShaohong; YANGOinye; ZHENGDu

    2003-01-01

    Eco-geographic regionalization has been one of the most important topics in China's regionalization researches since the end of the 20th century. It is a major ecosystem in geographic zonality. A hierarchical system, which is formed by division or combination of natural features based on geographic relativity and comparison of major ecosystem factors (including biological and non-biological) and geographic zonality, is called eco-geographic regional system. This paper introduces process of China's regionalization development. The first level unit, temperature zone, is delineated with main criteria of temperature. The second level unit, humidity region, is based on criteria of water/moisture states. The third level unit, natural region, is divided according to medium geomorphologic units. Vegetation types and soils are applied as supplementary criteria to indicate temperature and water/moisture states. Mapping process from qualitative to quantitative and China's eco-geographic regional system are also explained in this paper.

  12. Delineating Concealed Faults within Cogdell Oil Field via Earthquake Detection

    Science.gov (United States)

    Aiken, C.; Walter, J. I.; Brudzinski, M.; Skoumal, R.; Savvaidis, A.; Frohlich, C.; Borgfeldt, T.; Dotray, P.

    2016-12-01

    Cogdell oil field, located within the Permian Basin of western Texas, has experienced several earthquakes ranging from magnitude 1.7 to 4.6, most of which were recorded since 2006. Using the Earthscope USArray, Gan and Frohlich [2013] relocated some of these events and found a positive correlation in the timing of increased earthquake activity and increased CO2 injection volume. However, focal depths of these earthquakes are unknown due to 70 km station spacing of the USArray. Accurate focal depths as well as new detections can delineate subsurface faults and establish whether earthquakes are occurring in the shallow sediments or in the deeper basement. To delineate subsurface fault(s) in this region, we first detect earthquakes not currently listed in the USGS catalog by applying continuous waveform-template matching algorithms to multiple seismic data sets. We utilize seismic data spanning the time frame of 2006 to 2016 - which includes data from the U.S. Geological Survey Global Seismographic Network, the USArray, and the Sweetwater, TX broadband and nodal array located 20-40 km away. The catalog of earthquakes enhanced by template matching reveals events that were well recorded by the large-N Sweetwater array, so we are experimenting with strategies for optimizing template matching using different configurations of many stations. Since earthquake activity in the Cogdell oil field is on-going (a magnitude 2.6 occurred on May 29, 2016), a temporary deployment of TexNet seismometers has been planned for the immediate vicinity of Cogdell oil field in August 2016. Results on focal depths and detection of small magnitude events are pending this small local network deployment.

  13. Semi-automatic delineation using weighted CT-MRI registered images for radiotherapy of nasopharyngeal cancer

    Energy Technology Data Exchange (ETDEWEB)

    Fitton, I. [European Georges Pompidou Hospital, Department of Radiology, 20 rue Leblanc, 75015, Paris (France); Cornelissen, S. A. P. [Image Sciences Institute, UMC, Department of Radiology, P.O. Box 85500, 3508 GA Utrecht (Netherlands); Duppen, J. C.; Rasch, C. R. N.; Herk, M. van [The Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital, Department of Radiotherapy, Plesmanlaan 121, 1066 CX Amsterdam (Netherlands); Steenbakkers, R. J. H. M. [University Medical Center Groningen, Department of Radiation Oncology, Hanzeplein 1, 9713 GZ Groningen (Netherlands); Peeters, S. T. H. [UZ Gasthuisberg, Herestraat 49, 3000 Leuven, Belgique (Belgium); Hoebers, F. J. P. [Maastricht University Medical Center, Department of Radiation Oncology (MAASTRO clinic), GROW School for Oncology and Development Biology Maastricht, 6229 ET Maastricht (Netherlands); Kaanders, J. H. A. M. [UMC St-Radboud, Department of Radiotherapy, Geert Grooteplein 32, 6525 GA Nijmegen (Netherlands); Nowak, P. J. C. M. [ERASMUS University Medical Center, Department of Radiation Oncology,Groene Hilledijk 301, 3075 EA Rotterdam (Netherlands)

    2011-08-15

    Purpose: To develop a delineation tool that refines physician-drawn contours of the gross tumor volume (GTV) in nasopharynx cancer, using combined pixel value information from x-ray computed tomography (CT) and magnetic resonance imaging (MRI) during delineation. Methods: Operator-guided delineation assisted by a so-called ''snake'' algorithm was applied on weighted CT-MRI registered images. The physician delineates a rough tumor contour that is continuously adjusted by the snake algorithm using the underlying image characteristics. The algorithm was evaluated on five nasopharyngeal cancer patients. Different linear weightings CT and MRI were tested as input for the snake algorithm and compared according to contrast and tumor to noise ratio (TNR). The semi-automatic delineation was compared with manual contouring by seven experienced radiation oncologists. Results: A good compromise for TNR and contrast was obtained by weighing CT twice as strong as MRI. The new algorithm did not notably reduce interobserver variability, it did however, reduce the average delineation time by 6 min per case. Conclusions: The authors developed a user-driven tool for delineation and correction based a snake algorithm and registered weighted CT image and MRI. The algorithm adds morphological information from CT during the delineation on MRI and accelerates the delineation task.

  14. ModBack - simplified contaminant source zone delineation using backtracking

    Science.gov (United States)

    Thielsch, K.; Herold, M.; Ptak, T.

    2012-12-01

    Contaminated groundwater poses a serious threat to drinking water resources all over the world. Even though contaminated water might be detected in observation wells, a proper clean up is often only successful if the source of the contamination is detected and subsequently removed, contained or remediated. The high costs of groundwater remediation could be possibly significantly reduced if, from the outset, a focus is placed on source zone detection. ModBack combines several existing modelling tools in one easy to use GIS-based interface helping to delineate potential contaminant source zones in the subsurface. The software is written in Visual Basic 3.5 and uses the ArcObjects library to implement all required GIS applications. It can run without modification on any Microsoft Windows based PC with sufficient RAM and at least Microsoft .NET Framework 3.5. Using ModBack requires additional installation of the following software: Processing Modflow Pro 7.0, ModPath, CSTREAM (Bayer-Raich et al., 2003), Golden Software Surfer and Microsoft Excel. The graphical user interface of ModBack is separated into four blocks of procedures dealing with: data input, groundwater modelling, backtracking and analyses. Geographical data input includes all georeferenced information pertaining to the study site. Information on subsurface contamination is gathered either by conventional sampling of monitoring wells or by conducting integral pumping tests at control planes with a specific sampling scheme. Hydraulic data from these pumping tests together with all other available information are then used to set up a groundwater flow model of the study site, which provides the flow field for transport simulations within the subsequent contamination backtracking procedures, starting from the defined control planes. The backtracking results are then analysed within ModBack. The potential areas of contamination source presence or absence are determined based on the procedure used by Jarsjö et

  15. Delineating shallow ground water irrigated areas in the Atankwidi ...

    African Journals Online (AJOL)

    user

    Once this was achieved, classification techniques using Quickbird imagery was used ... applied for land use classification. ... Protection Agency / World Bank, 1999). ..... Proceedings of the 2nd Workshop of the EARSeL SIG on Land Use.

  16. Report of findings : wetland delineation investigation : Rocky Mountain Arsenal

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — ESCO Associates Inc. was subcontracted by Gannett Fleming, Inc., a contractor to the United States Environmental Protection Agency (EPA), to conduct a survey of...

  17. Delineating liver events in trichloroethylene-induced autoimmune hepatitis.

    Science.gov (United States)

    Gilbert, Kathleen M; Przybyla, Beata; Pumford, Neil R; Han, Tao; Fuscoe, James; Schnackenberg, Laura K; Holland, Ricky D; Doss, Jason C; Macmillan-Crow, Lee Ann; Blossom, Sarah J

    2009-04-01

    Exposure to the environmental pollutant trichloroethylene (TCE) has been linked to autoimmune disease development in humans. Chronic (32-week) low-level exposure to TCE has been shown to promote autoimmune hepatitis in association with CD4(+) T cell activation in autoimmune-prone MRL+/+ mice. MRL+/+ mice are usually thought of as a model of systemic lupus rather than an organ-specific disease such as autoimmune hepatitis. Consequently, the present study examined gene expression and metabolites to delineate the liver events that skewed the autoimmune response toward that organ in TCE-treated mice. Female MRL+/+ mice were treated with 0.5 mg/mL TCE in their drinking water. The results showed that TCE-induced autoimmune hepatitis could be detected in as little as 26 weeks. TCE exposure also generated a time-dependent increase in the number of antibodies specific for liver proteins. The gene expression correlated with the metabolite analysis to show that TCE upregulated the methionine/homocysteine pathway in the liver after 26 weeks of exposure. The results also showed that TCE exposure altered the expression of selective hepatic genes associated with immunity and inflammation. On the basis of these results, future mechanistic studies will focus on how alterations in genes associated with immunity and inflammation, in conjunction with protein alterations in the liver, promote liver immunogenicity in TCE-treated MRL+/+ mice.

  18. Hornblendite delineates zones of mass transfer through the lower crust

    Science.gov (United States)

    Daczko, Nathan R.; Piazolo, Sandra; Meek, Uvana; Stuart, Catherine A.; Elliott, Victoria

    2016-08-01

    Geochemical signatures throughout the layered Earth require significant mass transfer through the lower crust, yet geological pathways are under-recognized. Elongate bodies of basic to ultrabasic rocks are ubiquitous in exposures of the lower crust. Ultrabasic hornblendite bodies hosted within granulite facies gabbroic gneiss of the Pembroke Valley, Fiordland, New Zealand, are typical occurrences usually reported as igneous cumulate hornblendite. Their igneous features contrast with the metamorphic character of their host gabbroic gneiss. Both rock types have a common parent; field relationships are consistent with modification of host gabbroic gneiss into hornblendite. This precludes any interpretation involving cumulate processes in forming the hornblendite; these bodies are imposter cumulates. Instead, replacement of the host gabbroic gneiss formed hornblendite as a result of channeled high melt flux through the lower crust. High melt/rock ratios and disequilibrium between the migrating magma (granodiorite) and its host gabbroic gneiss induced dissolution (grain-scale magmatic assimilation) of gneiss and crystallization of mainly hornblende from the migrating magma. The extent of this reaction-replacement mechanism indicates that such hornblendite bodies delineate significant melt conduits. Accordingly, many of the ubiquitous basic to ultrabasic elongate bodies of the lower crust likely map the ‘missing’ mass transfer zones.

  19. Delineating social network data anonymization via random edge perturbation

    KAUST Repository

    Xue, Mingqiang

    2012-01-01

    Social network data analysis raises concerns about the privacy of related entities or individuals. To address this issue, organizations can publish data after simply replacing the identities of individuals with pseudonyms, leaving the overall structure of the social network unchanged. However, it has been shown that attacks based on structural identification (e.g., a walk-based attack) enable an adversary to re-identify selected individuals in an anonymized network. In this paper we explore the capacity of techniques based on random edge perturbation to thwart such attacks. We theoretically establish that any kind of structural identification attack can effectively be prevented using random edge perturbation and show that, surprisingly, important properties of the whole network, as well as of subgraphs thereof, can be accurately calculated and hence data analysis tasks performed on the perturbed data, given that the legitimate data recipient knows the perturbation probability as well. Yet we also examine ways to enhance the walk-based attack, proposing a variant we call probabilistic attack. Nevertheless, we demonstrate that such probabilistic attacks can also be prevented under sufficient perturbation. Eventually, we conduct a thorough theoretical study of the probability of success of any}structural attack as a function of the perturbation probability. Our analysis provides a powerful tool for delineating the identification risk of perturbed social network data; our extensive experiments with synthetic and real datasets confirm our expectations. © 2012 ACM.

  20. Delineation of groundwater potential zone: An AHP/ANP approach

    Indian Academy of Sciences (India)

    Etishree Agarwal; Rajat Agarwal; R D Garg; P K Garg

    2013-06-01

    The sustainable development and management of groundwater resource requires precise quantitative assessment based on scientific principle and modern techniques. In the present study, groundwater potential zone are delineated using remote sensing, geographical information system (GIS) and multi-criteria decision making (MCDM) techniques in Unnao district, Uttar Pradesh. The analytical network process (ANP) is a method that makes it possible for one to deal systematically, and includes the analytical hierarchy process (AHP) as a special case. The AHP and ANP are used to determine the weights of various themes and their classes for identifying the groundwater potential zone. These weights are applied in a linear combination to obtain five different groundwater potential zone in the study area, namely ‘very poor’, ‘poor’, ‘moderate’, ‘good’ and ‘very good’. It has been concluded that about 153.39 km2 area has very good groundwater potential which is only 3.37% of the total study area. However, the area having very poor groundwater potential is about 850 km2 which is about 19.63% of the study area. The area having good, moderate and poor groundwater potential is about 540.25, 1135.5, 1868.6 km2, respectively. The groundwater potential zone map was finally verified using the well yield data of 37 pumping wells, and the result was found satisfactory.

  1. DNA Probe Pooling for Rapid Delineation of Chromosomal Breakpoints

    Energy Technology Data Exchange (ETDEWEB)

    Lu, Chun-Mei; Kwan, Johnson; Baumgartner, Adolf; Weier, Jingly F.; Wang, Mei; Escudero, Tomas; Munne' , Santiago; Zitzelsberger, Horst F.; Weier, Heinz-Ulrich

    2009-01-30

    Structural chromosome aberrations are hallmarks of many human genetic diseases. The precise mapping of translocation breakpoints in tumors is important for identification of genes with altered levels of expression, prediction of tumor progression, therapy response, or length of disease-free survival as well as the preparation of probes for detection of tumor cells in peripheral blood. Similarly, in vitro fertilization (IVF) and preimplantation genetic diagnosis (PGD) for carriers of balanced, reciprocal translocations benefit from accurate breakpoint maps in the preparation of patient-specific DNA probes followed by a selection of normal or balanced oocytes or embryos. We expedited the process of breakpoint mapping and preparation of case-specific probes by utilizing physically mapped bacterial artificial chromosome (BAC) clones. Historically, breakpoint mapping is based on the definition of the smallest interval between proximal and distal probes. Thus, many of the DNA probes prepared for multi-clone and multi-color mapping experiments do not generate additional information. Our pooling protocol described here with examples from thyroid cancer research and PGD accelerates the delineation of translocation breakpoints without sacrificing resolution. The turnaround time from clone selection to mapping results using tumor or IVF patient samples can be as short as three to four days.

  2. Reverse time migration of prism waves for salt flank delineation

    KAUST Repository

    Dai, Wei

    2013-09-22

    In this paper, we present a new reverse time migration method for imaging salt flanks with prism wave reflections. It consists of four steps: (1) migrating the seismic data with conventional RTM to give the RTM image; (2) using the RTM image as a reflectivity model to simulate source-side reflections with the Born approximation; (3) zero-lag correlation of the source-side reflection wavefields and receiver-side wavefields to produce the prism wave migration image; and (4) repeating steps 2 and 3 for the receiver-side reflections. An advantage of this method is that there is no need to pick the horizontal reflectors prior to migration of the prism waves. It also separately images the vertical structures at a different step to reduce crosstalk interference. The disadvantage of prism wave migration algorithm is that its computational cost is twice that of conventional RTM. The empirical results with a salt model suggest that prism wave migration can be an effective method for salt flank delineation in the absence of diving waves.

  3. Volcanic calderas delineate biogeographic provinces among Yellowstone thermophiles.

    Science.gov (United States)

    Takacs-Vesbach, Cristina; Mitchell, Kendra; Jackson-Weaver, Olan; Reysenbach, Anna-Louise

    2008-07-01

    It has been suggested that the distribution of microorganisms should be cosmopolitan because of their enormous capacity for dispersal. However, recent studies have revealed that geographically isolated microbial populations do exist. Geographic distance as a barrier to dispersal is most often invoked to explain these distributions. Here we show that unique and diverse sequences of the bacterial genus Sulfurihydrogenibium exist in Yellowstone thermal springs, indicating that these sites are geographically isolated. Although there was no correlation with geographic distance or the associated geochemistry of the springs, there was a strong historical signal. We found that the Yellowstone calderas, remnants of prehistoric volcanic eruptions, delineate biogeographical provinces for the Sulfurihydrogenibium within Yellowstone (chi(2): 9.7, P = 0.002). The pattern of distribution that we have detected suggests that major geological events in the past 2 million years explain more of the variation in sequence diversity in this system than do contemporary factors such as habitat or geographic distance. These findings highlight the importance of historical legacies in determining contemporary microbial distributions and suggest that the same factors that determine the biogeography of macroorganisms are also evident among bacteria.

  4. Catchment delineation and morphometric analysis using geographical information system.

    Science.gov (United States)

    Kumar, Manoj; Kumar, Rohitashw; Singh, P K; Singh, Manjeet; Yadav, K K; Mittal, H K

    2015-01-01

    The geographical information system (GIS) has emerged as an efficient tool in delineation of drainage patterns of watershed planning and management. The morphometric parameters of basins can address linear, areal and relief aspects. The study deals with the integrated watershed management of Baliya micro-watersheds, located in the Udaipur district of Rajasthan, India. Morphometric analysis in hydrological investigation is an important aspect and it is inevitable in the development and management of drainage basins. The determination of linear, areal and relief parameters indicate fairly good significance. The low value of the bifurcation ratio of 4.19 revealed that the drainage pattern has not been distorted by structural disturbance. The high value of the elongation ratio (0.68) compared to the circulatory ratio (0.27) indicates an elongated shape of the watershed. The high value of drainage density (5.39 km/km(2)) and stream frequency (12.32) shows that the region has impermeable subsoil material under poor vegetative cover with a low relief factor. The morphometric parameters of relief ratio (0.041) and relative relief (0.99%) show that the watershed can be treated using GIS techniques to determine the morphometric presence of dendritic drainage pattern, with a view to selecting the soil and water conservation measures and water harvesting.

  5. Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis

    Directory of Open Access Journals (Sweden)

    Lee H. Bergstrand

    2016-03-01

    Full Text Available Steroids are ubiquitous in natural environments and are a significant growth substrate for microorganisms. Microbial steroid metabolism is also important for some pathogens and for biotechnical applications. This study delineated the distribution of aerobic steroid catabolism pathways among over 8,000 microorganisms whose genomes are available in the NCBI RefSeq database. Combined analysis of bacterial, archaeal, and fungal genomes with both hidden Markov models and reciprocal BLAST identified 265 putative steroid degraders within only Actinobacteria and Proteobacteria, which mainly originated from soil, eukaryotic host, and aquatic environments. These bacteria include members of 17 genera not previously known to contain steroid degraders. A pathway for cholesterol degradation was conserved in many actinobacterial genera, particularly in members of the Corynebacterineae, and a pathway for cholate degradation was conserved in members of the genus Rhodococcus. A pathway for testosterone and, sometimes, cholate degradation had a patchy distribution among Proteobacteria. The steroid degradation genes tended to occur within large gene clusters. Growth experiments confirmed bioinformatic predictions of steroid metabolism capacity in nine bacterial strains. The results indicate there was a single ancestral 9,10-seco-steroid degradation pathway. Gene duplication, likely in a progenitor of Rhodococcus, later gave rise to a cholate degradation pathway. Proteobacteria and additional Actinobacteria subsequently obtained a cholate degradation pathway via horizontal gene transfer, in some cases facilitated by plasmids. Catabolism of steroids appears to be an important component of the ecological niches of broad groups of Actinobacteria and individual species of Proteobacteria.

  6. Using species distribution modeling to delineate the botanical richness patterns and phytogeographical regions of China

    Science.gov (United States)

    Zhang, Ming-Gang; Slik, J. W. Ferry; Ma, Ke-Ping

    2016-03-01

    The millions of plant specimens that have been collected and stored in Chinese herbaria over the past ~110 years have recently been digitized and geo-referenced. Here we use this unique collection data set for species distribution modeling exercise aiming at mapping & explaining the botanical richness; delineating China’s phytogeographical regions and investigating the environmental drivers of the dissimilarity patterns. We modeled distributions of 6,828 woody plants using MaxEnt and remove the collection bias using null model. The continental China was divided into different phytogeographical regions based on the dissimilarity patterns. An ordination and Getis-Ord Gi* hotspot spatial statistics were used to analysis the environmental drivers of the dissimilarity patterns. We found that the annual precipitation and temperature stability were responsible for observed species diversity. The mechanisms causing dissimilarity pattern seems differ among biogeographical regions. The identified environmental drivers of the dissimilarity patterns for southeast, southwest, northwest and northeast are annual precipitation, topographic & temperature stability, water deficit and temperature instability, respectively. For effective conservation of China’s plant diversity, identifying the historical refuge and protection of high diversity areas in each of the identified floristic regions and their subdivisions will be essential.

  7. Target volume delineation variation in radiotherapy for early stage rectal cancer in the Netherlands

    NARCIS (Netherlands)

    Nijkamp, Jasper; de Haas-Kock, Danielle F. M.; Beukema, Jannet C.; Neelis, Karen J.; Woutersen, Dankert; Ceha, Heleen; Rozema, Tom; Slot, Annerie; Vos-Westerman, Hanneke; Intven, Martijn; Spruit, Patty H.; van der Linden, Yvette; Geijsen, Debby; Verschueren, Karijn; van Herk, Marcel B.; Marijnen, Corrie A. M.

    2012-01-01

    Purpose: The aim of this study was to measure and improve the quality of target volume delineation by means of national consensus on target volume definition in early-stage rectal cancer. Methods and materials: The CTV's for eight patients were delineated by 11 radiation oncologists in 10 institutes

  8. Tree crown delineation from high resolution airborne LiDAR based on densities of high points

    NARCIS (Netherlands)

    Rahman, M.Z.A.; Gorte, B.G.H.

    2009-01-01

    Tree detection and tree crown delineation from Airborne LiDAR has been focusing mostly on utilizing the canopy height model (CHM). This paper presents a method for individual tree crown delineation based on densities of high points (DHP) from the high resolution Airborne LiDAR. The DHP method relies

  9. Geometrical Comparison Measures for Tumor Delineation, what do they mean for the Actual Dosis Plan?

    DEFF Research Database (Denmark)

    Hollensen, Christian; Persson, G.; Højgaard, L.

    2012-01-01

    Purpose/Objective: Gross tumour volume (GTV) delineation is central for radiotherapy planning. It provides the basis of the clinical target volume and finally the planning target volume (PTV) which is used for dose optimization. GTV delineations are prone to intermethod and interobserver variat...

  10. Towards a High-Resolution Global Inundation Delineation Dataset

    Science.gov (United States)

    Fluet-Chouinard, E.; Lehner, B.

    2011-12-01

    Although their importance for biodiversity, flow regulation and ecosystem service provision is widely recognized, wetlands and temporarily inundated landscapes remain poorly mapped globally because of their inherent elusive nature. Inventorying of wetland resources has been identified in international agreements as an essential component of appropriate conservation efforts and management initiatives of these threatened ecosystems. However, despite recent advances in remote sensing surface water monitoring, current inventories of surface water variations remain incomplete at the regional-to-global scale due to methodological limitations restricting truly global application. Remote sensing wetland applications such as SAR L-band are particularly constrained by image availability and heterogeneity of acquisition dates, while coarse resolution passive microwave and multi-sensor methods cannot discriminate distinct surface water bodies. As a result, the most popular global wetland dataset remains to this day the Global Lake & Wetland Database (Lehner and Doll, 2004) a spatially inconsistent database assembled from various existing data sources. The approach taken in this project circumvents the limitations of current global wetland monitoring methods by combining globally available topographic and hydrographic data to downscale coarse resolution global inundation data (Prigent et al., 2007) and thus create a superior inundation delineation map product. The developed procedure downscales inundation data from the coarse resolution (~27km) of current passive microwave sensors to the finer spatial resolution (~500m) of the topographic and hydrographic layers of HydroSHEDS' data suite (Lehner et al., 2006), while retaining the high temporal resolution of the multi-sensor inundation dataset. From the downscaling process emerges new information on the specific location of inundation, but also on its frequency and duration. The downscaling algorithm employs a decision tree

  11. Delineating relative homogeneous G+C domains in DNA sequences.

    Science.gov (United States)

    Li, W

    2001-10-03

    The concept of homogeneity of G+C content is always relative and subjective. This point is emphasized and quantified in this paper using a simple example of one sequence segmented into two subsequences. Whether the sequence is homogeneous or not can be answered by whether the two-subsequence model describes the DNA sequence better than the one-sequence model. There are at least three equivalent ways of looking at the 1-to-2 segmentation: Jensen-Shannon divergence measure, log likelihood ratio test, and model selection using Bayesian information criterion. Once a criterion is chosen, a DNA sequence can be recursively segmented into multiple domains. We use one subjective criterion called segmentation strength based on the Bayesian information criterion. Whether or not a sequence is homogeneous and how many domains it has depend on this criterion. We compare six different genome sequences (yeast S. cerevisiae chromosome III and IV, bacterium M. pneumoniae, human major histocompatibility complex sequence, longest contigs in human chromosome 21 and 22) by recursive segmentations at different strength criteria. Results by recursive segmentation confirm that yeast chromosome IV is more homogeneous than yeast chromosome III, human chromosome 21 is more homogeneous than human chromosome 22, and bacterial genomes may not be homogeneous due to short segments with distinct base compositions. The recursive segmentation also provides a quantitative criterion for identifying isochores in human sequences. Some features of our recursive segmentation, such as the possibility of delineating domain borders accurately, are superior to those of the moving-window approach commonly used in such analyses.

  12. Disease quantification on PET/CT images without object delineation

    Science.gov (United States)

    Tong, Yubing; Udupa, Jayaram K.; Odhner, Dewey; Wu, Caiyun; Fitzpatrick, Danielle; Winchell, Nicole; Schuster, Stephen J.; Torigian, Drew A.

    2017-03-01

    The derivation of quantitative information from images to make quantitative radiology (QR) clinically practical continues to face a major image analysis hurdle because of image segmentation challenges. This paper presents a novel approach to disease quantification (DQ) via positron emission tomography/computed tomography (PET/CT) images that explores how to decouple DQ methods from explicit dependence on object segmentation through the use of only object recognition results to quantify disease burden. The concept of an object-dependent disease map is introduced to express disease severity without performing explicit delineation and partial volume correction of either objects or lesions. The parameters of the disease map are estimated from a set of training image data sets. The idea is illustrated on 20 lung lesions and 20 liver lesions derived from 18F-2-fluoro-2-deoxy-D-glucose (FDG)-PET/CT scans of patients with various types of cancers and also on 20 NEMA PET/CT phantom data sets. Our preliminary results show that, on phantom data sets, "disease burden" can be estimated to within 2% of known absolute true activity. Notwithstanding the difficulty in establishing true quantification on patient PET images, our results achieve 8% deviation from "true" estimates, with slightly larger deviations for small and diffuse lesions where establishing ground truth becomes really questionable, and smaller deviations for larger lesions where ground truth set up becomes more reliable. We are currently exploring extensions of the approach to include fully automated body-wide DQ, extensions to just CT or magnetic resonance imaging (MRI) alone, to PET/CT performed with radiotracers other than FDG, and other functional forms of disease maps.

  13. Glacial Delineation and Ice Retreat on Pico de Orizaba, Mexico

    Science.gov (United States)

    Colby, A. E.; Weissling, B.; Xie, H.

    2011-12-01

    Pico de Orizaba, a dormant stratovolcano at the eastern end of the Trans-Mexican Volcanic Belt at approximately 19 degrees of latitude and the third largest peak in North America (5636 m), hosts what is likely the last significant tropical zone glacier (Jamapa Glacier) in the Northern Hemisphere. Not since the International Geophysical Year of 1957-58 has Pico's glacial environment been studied with any focused effort, perhaps due to the general innaccessibility, high altitude, and steep slopes. As are most glaciers around the world, the Jamapa Glacier is retreating, with a remarkable loss of ice in the past 2 decades. The rate and pattern of retreat is important to understanding climate change forcing as well as understanding environmental and water supply impacts to a substantial human population who live along the base of the volcano. Through the use of satellite imagery (LandSat, ASTER, IKONOS), legacy hand-drawn maps, aerial photographs, and first-hand accounts from climber's expeditions, a reasonably accurate map of almost 60 years of glacial retreat has been produced. Legacy hand-drawn maps of the ice edge, that pre-date the satellite era, did not fit perfectly with modern images when layered in ArcGIS. Oblique perspectives in Google Earth and various aerial and surface-based photographs of the mountain were used to help fit the ice edge to the actual topography. The disparity of satellite image pixel resolution (from 1 m IKONOS to 60 m LandSat) was addressed using various imagery analysis tools (eg. edge detection convolution filters and pixel unmixing) in order to delineate an approximate ice edge for the respective image date. The final map shows the nature of ice edge retreat on Pico de Orizaba from 1945 up until the present (Feb 2011).

  14. Breast cancer margin delineation with fluorescence lifetime imaging (Conference Presentation)

    Science.gov (United States)

    Phipps, Jennifer E.; Gorpas, Dimitris; Darrow, Morgan; Unger, Jakob; Bold, Richard; Marcu, Laura

    2017-02-01

    The current standard of care for early stages of breast cancer is breast-conserving surgery (BCS). BCS involves a lumpectomy procedure, during which the tumor is removed with a rim of normal tissue-if cancer cells found in that rim of tissue, it is called a positive margin and means part of the tumor remains in the breast. Currently there is no method to determine if cancer cells exist at the margins of lumpectomy specimens aside from time-intensive histology methods that result in reoperations in up to 38% of cases. We used fluorescence lifetime imaging (FLIm) to measure time-resolved autofluorescence from N=13 ex vivo human breast cancer specimens (N=10 patients undergoing lumpectomy or mastectomy) and compared our results to histology. Tumor (both invasive and ductal carcinoma in situ), fibrous tissue, fat and fat necrosis have unique fluorescence signatures. For instance, between 500-580 nm, fluorescence lifetime of tumor was shortest (4.7 +/- 0.4 ns) compared to fibrous tissue (5.5 +/- 0.7 ns) and fat (7.0 +/- 0.1 ns), P<0.05 (ANOVA). These differences are due to the biochemical properties of lipid, nicotineamide adenine dinucleotide (NADH) and collagen fibers in the fat, tumor and fibrous tissue, respectively. Additionally, the FLIm data is augmented to video of the breast tissue with image processing algorithms that track a blue (450 nm) aiming beam used in parallel with the 355 nm excitation beam. This allows for accurate histologic co-registration and in the future will allow for three-dimensional lumpectomy surfaces to be imaged for cancer margin delineation.

  15. Radiation Protection

    Science.gov (United States)

    ... EPA United States Environmental Protection Agency Search Search Radiation Protection Share Facebook Twitter Google+ Pinterest Contact Us Radiation Protection Document Library View and download EPA radiation ...

  16. Evaluation of catchment delineation methods for the medium-resolution National Hydrography Dataset

    Science.gov (United States)

    Johnston, Craig M.; Dewald, Thomas G.; Bondelid, Timothy R.; Worstell, Bruce B.; McKay, Lucinda D.; Rea, Alan; Moore, Richard B.; Goodall, Jonathan L.

    2009-01-01

    Different methods for determining catchments (incremental drainage areas) for stream segments of the medium-resolution (1:100,000-scale) National Hydrography Dataset (NHD) were evaluated by the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (USEPA). The NHD is a comprehensive set of digital spatial data that contains information about surface-water features (such as lakes, ponds, streams, and rivers) of the United States. The need for NHD catchments was driven primarily by the goal to estimate NHD streamflow and velocity to support water-quality modeling. The application of catchments for this purpose also demonstrates the broader value of NHD catchments for supporting landscape characterization and analysis. Five catchment delineation methods were evaluated. Four of the methods use topographic information for the delineation of the NHD catchments. These methods include the Raster Seeding Method; two variants of a method first used in a USGS New England study-one used the Watershed Boundary Dataset (WBD) and the other did not-termed the 'New England Methods'; and the Outlet Matching Method. For these topographically based methods, the elevation data source was the 30-meter (m) resolution National Elevation Dataset (NED), as this was the highest resolution available for the conterminous United States and Hawaii. The fifth method evaluated, the Thiessen Polygon Method, uses distance to the nearest NHD stream segments to determine catchment boundaries. Catchments were generated using each method for NHD stream segments within six hydrologically and geographically distinct Subbasins to evaluate the applicability of the method across the United States. The five methods were evaluated by comparing the resulting catchments with the boundaries and the computed area measurements available from several verification datasets that were developed independently using manual methods. The results of the evaluation indicated that the two

  17. Wellhead Online Testing Research of Drill Pipe Joints Based on the Principle of Ultrasonic Array%基于超声阵列的钻杆接头井口在线检测研究

    Institute of Scientific and Technical Information of China (English)

    祁杰; 林立; 程腾飞; 王晗; 郭树霞

    2015-01-01

    Flaw detection idea of this paper is to detect tool joints 360-degree by an array of ultra-sonic sensors,and to integrate with the magnetic flux leakage inspection apparatus developed by China University of Petroleum (Beijing),eventually to find a new method of wellhead which can detect the overall drill online at the wellhead.First of all,the ANSYS software was used for nu-merical simulation to demonstrated the feasibility of ultrasonic drill testing,and on this basis pro-posed an ultrasonic probe array layout scheme,an ultrasonic drill pipe joints detection device was designed.Finally,with the virtual assembly of the ultrasonic detection module and magnetic flux leakage testing module,a“complex flaw”detection device for drill was proposed and designed to a-chieve a simultaneous detection purposes of the drill rod body and joints.%利用超声传感器组成的阵列对钻杆接头同时进行360°环向检测,并与中国石油大学(北京)研发的漏磁探伤装置进行集成,组成一种可对钻杆整体进行井口在线检测的新方法。通过ANSYS软件进行数值模拟,证明了超声检测钻杆的可行性,在此基础上提出了一种超声波探头阵列布置方案,设计了一种超声波钻杆接头检测装置。将超声检测模块与漏磁检测模块进行虚拟装配,提出并设计了一种钻杆“复合探伤”检测装置,实现了同时检测钻杆杆体和钻杆接头的目标。

  18. Delineating Partnerships from other Forms of Collaboration in Regional Development Planning

    DEFF Research Database (Denmark)

    Larsen, Peter Wilgaard

    2016-01-01

    literature depicts similar difficulties in delineating partnerships from other collaboration models causing diversified messages about partnerships. In an attempt to invigorate the partnership literature by delineating partnerships from other forms of collaboration and thus progress the work and output...... to delineate partnerships from other forms of collaboration such as networks, clusters and governance-partnerships.......The idea of an all-encompassing partnership has vindicated all sorts of collaboration models to be articulated as partnerships although not occurring as ones, leaving practitioners and politicians of regional development planning with suboptimal ways of collaborating. Reviewing the partnership...

  19. Impact of CT/MRI Image Registration on Target Delineation of Radiotherapy for Lung Cancer with Brain Metastasis

    Directory of Open Access Journals (Sweden)

    Yang LI

    2012-08-01

    Full Text Available Background and objective Accurate target delineation in radiation therapy is a key component of the treatment regimen for brain metastasis for which CT/MRI fusion technology provides a feasible method. The aim of this study is to explore the role of CT/MRI image registration in target delineation for lung cancer with brain metastasis. Methods The image data of 31 patients were processed using Oncentra MasterPlan. The GTVs were delineated on CT and CT/MRI images, and their differences were compared to analyze the impact of the maximum average error and tumor edema on target delineation. Results The GTVs delineated on CT/MRI images were markedly smaller than those delineated on CT images. Target delineation was clearly influenced by edema. Conclusion The technology of CT/MRI image registration can improve the accuracy of target delineation for lung cancer with brain metastasis.

  20. Delineating wetland catchments and modeling hydrologic connectivity using lidar data and aerial imagery

    Science.gov (United States)

    In traditional watershed delineation and topographic modeling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM) to enforce flow continuity of water across the topographic surface to the watershed outlets. In re...

  1. PET-based delineation of tumour volumes in lung cancer: comparison with pathological findings

    Energy Technology Data Exchange (ETDEWEB)

    Schaefer, Andrea; Mai, Sebastian; Bohnenberger, Hendrik; Kirsch, Carl-Martin; Grgic, Aleksandar [Saarland University Medical Center, Department of Nuclear Medicine, Homburg (Germany); Kim, Yoo Jin; Bohle, Rainer M. [Saarland University Medical Center, Department of Pathology, Homburg (Germany); Kremp, Stephanie; Fleckenstein, Jochen; Ruebe, Christian [Saarland University Medical Center, Department of Radiooncology, Homburg (Germany); Schaefers, Hans-Joachim [Saarland University Medical Center, Department of Thoracic and Cardiovascular Surgery, Homburg (Germany); Kuhnigk, Jan-Martin [MeVis Research Center for Medical Diagnostic Systems and Visualization, Bremen (Germany)

    2013-08-15

    The objective of the study was to validate an adaptive, contrast-oriented thresholding algorithm (COA) for tumour delineation in {sup 18}F-fluorodeoxyglucose (FDG) positron emission tomography (PET) for non-small cell lung cancer (NSCLC) in comparison with pathological findings. The impact of tumour localization, tumour size and uptake heterogeneity on PET delineation results was also investigated. PET tumour delineation by COA was compared with both CT delineation and pathological findings in 15 patients to investigate its validity. Correlations between anatomical volume, metabolic volume and the pathology reference as well as between the corresponding maximal diameters were determined. Differences between PET delineations and pathological results were investigated with respect to tumour localization and uptake heterogeneity. The delineated volumes and maximal diameters measured on PET and CT images significantly correlated with the pathology reference (both r > 0.95, p < 0.0001). Both PET and CT contours resulted in overestimation of the pathological volume (PET 32.5 {+-} 26.5 %, CT 46.6 {+-} 27.4 %). CT volumes were larger than those delineated on PET images (CT 60.6 {+-} 86.3 ml, PET 48.3 {+-} 61.7 ml). Maximal tumour diameters were similar for PET and CT (51.4 {+-} 19.8 mm for CT versus 53.4 {+-} 19.1 mm for PET), slightly overestimating the pathological reference (mean difference CT 4.3 {+-} 3.2 mm, PET 6.2 {+-} 5.1 mm). PET volumes of lung tumours located in the lower lobe were significantly different from those determined from pathology (p = 0.037), whereas no significant differences were observed for tumours located in the upper lobe (p = 0.066). Only minor correlation was found between pathological tumour size and PET heterogeneity (r = -0.24). PET tumour delineation by COA showed a good correlation with pathological findings. Tumour localization had an influence on PET delineation results. The impact of tracer uptake heterogeneity on PET delineation

  2. Delineation of a shallow subsurface aquiclude relief with aero electromagnetic data

    Science.gov (United States)

    Römer, A.; Winkler, E.; Bieber, G.; Motschka, K.; Reitner, H.

    2009-04-01

    Within a governmental groundwater remediation project in Austria, a new (overworked) characterization of a large catchment area (600 km2) with aeroelectromagnetics (AEM) was carried out. This catchment area is a large and important zone of subsurface water resources for currently and future municipal and rural water supply. Conflicts in future land use between e.g. agricultura, excavigation of mass materials, city and regional planning, ect. are preassigned and have impacts concerning the quality and quantity of available groundwater. The geology of the investigation area is a typical post-glacial region, characterized by aggradational deposition areas. The thickness of the wide-spread terrace gravels ranges from 10m to 40m, being the preferred ground water aquifer. The subsurface of the investigation area is built up by a Neogen basement, the so called Molasse and is acting as an aquiclude relative to the overlying quaternary sediments. Aeroelectromagnetic data from a former aerogeophysical survey were reinterpreted with a new processing and interpretation approach for the determination of this geological 3 layer case. This aeroelectromagnetic inversion integrates results from borehole data, ground geoelectric surveys and from geological mapping as a priori input information. The inversion result for a measured AEM data value is determined by a combination of geostatistically weighted additional information and likelihood weighted theoretical models. The primary aim of the study was the delineation of the aquiclude relief. The ground water circulation within the different terrace gravels is substantially affected by this Neogen relief. Depressions and prequaternary (tertiary) riverbeds within the Molasse often show other trends of water flow than the surficial, recent vales. The knowledge of the hydrogeological framework is essential for identification and definition of water protection and catchment areas as a decision base for national land use regulations. The

  3. Hydrologic Modeling and Flood Frequency Analysis for Ordinary High Water Mark Delineation

    Science.gov (United States)

    2016-02-01

    ER D C/ CR RE L TR -1 6- 2 Wetland Regulatory Assistance Program (WRAP) Hydrologic Modeling and Flood Frequency Analysis for Ordinary...Program (WRAP) ERDC/CRREL TR-16-2 February 2016 Hydrologic Modeling and Flood Frequency Analysis for Ordinary High Water Mark Delineation John...Abstract This document explores hydrologic modeling and flood frequency analysis for ordinary high water mark (OHWM) delineation performed for Clean

  4. A wavelet-based ECG delineation algorithm for 32-bit integer online processing

    OpenAIRE

    Chiari Lorenzo; Di Marco Luigi Y

    2011-01-01

    Abstract Background Since the first well-known electrocardiogram (ECG) delineator based on Wavelet Transform (WT) presented by Li et al. in 1995, a significant research effort has been devoted to the exploitation of this promising method. Its ability to reliably delineate the major waveform components (mono- or bi-phasic P wave, QRS, and mono- or bi-phasic T wave) would make it a suitable candidate for efficient online processing of ambulatory ECG signals. Unfortunately, previous implementati...

  5. Plastic and Glass Greenhouses Detection and Delineation from WORLDVIEW-2 Satellite Imagery

    Science.gov (United States)

    Koc-San, D.; Sonmez, N. K.

    2016-06-01

    Greenhouse detection using remote sensing technologies is an important research area for yield estimation, sustainable development, urban and rural planning and management. An approach was developed in this study for the detection and delineation of greenhouse areas from high resolution satellite imagery. Initially, the candidate greenhouse patches were detected using supervised classification techniques. For this purpose, Maximum Likelihood (ML), Random Forest (RF), and Support Vector Machines (SVM) classification techniques were applied and compared. Then, sieve filter and morphological operations were performed for improving the classification results. Finally, the obtained candidate plastic and glass greenhouse areas were delineated using boundary tracing and Douglas Peucker line simplification algorithms. The proposed approach was implemented in the Kumluca district of Antalya, Turkey utilizing pan-sharpened WorldView-2 satellite imageries. Kumluca is the prominent district of Antalya with greenhouse cultivation and includes both plastic and glass greenhouses intensively. When the greenhouse classification results were analysed, it can be stated that the SVM classification provides most accurate results and RF classification follows this. The SVM classification overall accuracy was obtained as 90.28%. When the greenhouse boundary delineation results were considered, the plastic greenhouses were delineated with 92.11% accuracy, while glass greenhouses were delineated with 80.67% accuracy. The obtained results indicate that, generally plastic and glass greenhouses can be detected and delineated successfully from WorldView-2 satellite imagery.

  6. A modular low-complexity ECG delineation algorithm for real-time embedded systems.

    Science.gov (United States)

    Bote, Jose Manuel; Recas, Joaquin; Rincon, Francisco; Atienza, David; Hermida, Roman

    2017-02-17

    This work presents a new modular and lowcomplexity algorithm for the delineation of the different ECG waves (QRS, P and T peaks, onsets and end). Involving a reduced number of operations per second and having a small memory footprint, this algorithm is intended to perform realtime delineation on resource-constrained embedded systems. The modular design allows the algorithm to automatically adjust the delineation quality in run time to a wide range of modes and sampling rates, from a Ultra-low power mode when no arrhythmia is detected, in which the ECG is sampled at low frequency, to a complete High-accuracy delineation mode in which the ECG is sampled at high frequency and all the ECG fiducial points are detected, in case of arrhythmia. The delineation algorithm has been adjusted using the QT database, providing very high sensitivity and positive predictivity, and validated with the MIT database. The errors in the delineation of all the fiducial points are below the tolerances given by the Common Standards for Electrocardiography (CSE) committee in the High-accuracy mode, except for the P wave onset, for which the algorithm is above the agreed tolerances by only a fraction of the sample duration. The computational load for the ultra-low-power 8-MHz TI MSP430 series microcontroller ranges from 0.2 to 8.5% according to the mode used.

  7. Simple indicator kriging for estimating the probability of incorrectly delineating hazardous areas in a contaminated site

    Energy Technology Data Exchange (ETDEWEB)

    Juang, K.W.; Lee, D.Y. [National Taiwan Univ., Taipei (Taiwan, Province of China). Graduate Inst. of Agricultural Chemistry

    1998-09-01

    The probability of incorrectly delineating hazardous areas in a contaminated site is very important for decision-makers because it indicates the magnitude of confidence that decision-makers have in determining areas in need of remediation. In this study, simple indicator kriging (SIK) was used to estimate the probability of incorrectly delineating hazardous areas in a heavy metal-contaminated site, which is located at Taoyuan, Taiwan, and is about 10 ha in area. In the procedure, the values 0 and 1 were assigned to be the stationary means of the indicator codes in the SIK model to represent two hypotheses, hazardous and safe, respectively. The spatial distribution of the conditional probability of heavy metal concentrations lower than a threshold, given each hypothesis, was estimated using SIK. Then, the probabilities of false positives ({alpha}) (i.e., the probability of declaring a location hazardous when it is not) and false negatives ({beta}) (i.e., the probability of declaring a location safe when it is not) in delineating hazardous areas for the heavy metal-contaminated site could be obtained. The spatial distribution of the probabilities of false positives and false negatives could help in delineating hazardous areas based on a tolerable probability level of incorrect delineation. In addition, delineation complicated by the cost of remediation, hazards in the environment, and hazards to human health could be made based on the minimum values of {alpha} and {beta}. The results suggest that the proposed SIK procedure is useful for decision-makers who need to delineate hazardous areas in a heavy metal-contaminated site.

  8. Pile Foundation Mechanical Characteristic Analysis for Three Types of Wellhead Platforms in East China Sea%东海三种井口平台桩基受力特性分析

    Institute of Scientific and Technical Information of China (English)

    孙友义; 侯金林; 刘明

    2014-01-01

    Wellhead platforms with 4 legs and 8 skirt piles can be classified as three forms inclu-ding single-batter type,double-batter type and batter-to-vertical type according to the jacket leg batter.The pile foundation mechanical characteristic is an important performance of the platform. Pile foundation mechanical characteristics for the three types of platforms were studied,using SACS software,based on nonlinear soil-pile-structure interaction analysis.Influence factor analy-sis on pile foundation mechanical characteristics was performed,and measures for improving the pile foundation bearing capacities were discussed.The results can provide a reference for jacket and pile foundation design for these types of platforms.%4腿8裙桩井口平台按导管架腿斜度可分为单斜式、双斜式与斜变直式3种形式。桩基受力特性是平台的重要性能。以 SACS 程序为分析工具,基于非线性土壤/桩基/结构交互分析,研究了这3种形式平台的桩基受力特性。通过桩基受力影响因素分析,提出了改善桩基受力的措施,可为该类平台的导管架与桩基设计提供参考。

  9. Delineating Individual Trees from Lidar Data: A Comparison of Vector- and Raster-based Segmentation Approaches

    Directory of Open Access Journals (Sweden)

    Maggi Kelly

    2013-08-01

    Full Text Available Light detection and ranging (lidar data is increasingly being used for ecosystem monitoring across geographic scales. This work concentrates on delineating individual trees in topographically-complex, mixed conifer forest across the California’s Sierra Nevada. We delineated individual trees using vector data and a 3D lidar point cloud segmentation algorithm, and using raster data with an object-based image analysis (OBIA of a canopy height model (CHM. The two approaches are compared to each other and to ground reference data. We used high density (9 pulses/m2, discreet lidar data and WorldView-2 imagery to delineate individual trees, and to classify them by species or species types. We also identified a new method to correct artifacts in a high-resolution CHM. Our main focus was to determine the difference between the two types of approaches and to identify the one that produces more realistic results. We compared the delineations via tree detection, tree heights, and the shape of the generated polygons. The tree height agreement was high between the two approaches and the ground data (r2: 0.93–0.96. Tree detection rates increased for more dominant trees (8–100 percent. The two approaches delineated tree boundaries that differed in shape: the lidar-approach produced fewer, more complex, and larger polygons that more closely resembled real forest structure.

  10. Tumor delineation: The weakest link in the search for accuracy in radiotherapy

    Directory of Open Access Journals (Sweden)

    Njeh C

    2008-01-01

    Full Text Available Radiotherapy is one of the most effective modalities for the treatment of cancer. However, there is a high degree of uncertainty associated with the target volume of most cancer sites. The sources of these uncertainties include, but are not limited to, the motion of the target, patient setup errors, patient movements, and the delineation of the target volume. Recently, many imaging techniques have been introduced to track the motion of tumors. The treatment delivery using these techniques is collectively called image-guided radiation therapy (IGRT. Ultimately, IGRT is only as good as the accuracy with which the target is known. There are reports of interobserver variability in tumor delineation across anatomical sites, but the widest ranges of variations have been reported for the delineation of head and neck tumors as well as esophageal and lung carcinomas. Significant interobserver variability in target delineation can be attributed to many factors including the impact of imaging and the influence of the observer (specialty, training, and personal bias. The visibility of the target can be greatly improved with the use of multimodality imaging by co-registration of CT with a second modality such as magnetic resonance imaging (MRI and/or positron emission tomography. Also, continuous education, training, and cross-collaboration of the radiation oncologist with other specialties can reduce the degree of variability in tumor delineation.

  11. Multitracer: a Java-based tool for anatomic delineation of grayscale volumetric images.

    Science.gov (United States)

    Woods, Roger P

    2003-08-01

    A Java-based tool for delineating anatomic boundaries in 8- and 16- bit grayscale volumetric images is described. Modern features implemented by the tool include the ability to simultaneously view the current cursor position and the previously delineated boundaries on three orthogonal planes, the ability to magnify images during delineation using high-quality interpolation, the ability to encode and save boundaries with subvoxel resolution, and the ability to utilize coregistered images interchangeably during delineation. Additional features facilitate use of the tool in a multiuser, multiplatform environment and provide support for the documentation of anatomic delineation protocols. In addition to providing direct estimates of structure volumes, areas, and lengths, the tool allows contoured boundaries to be exported for more sophisticated analyses. The tool also provides support for manual editing of image volumes to remove confounding structures and for manual correction of image volumes that have been inaccurately edited. In addition to its research utility, the tool also has potential value in education, allowing students to interact with volumetric data and structural boundaries in three dimensions.

  12. Influence of aquifer heterogeneity on karst hydraulics and catchment delineation employing distributive modeling approaches

    Directory of Open Access Journals (Sweden)

    S. Oehlmann

    2013-07-01

    Full Text Available Due to their heterogeneous nature, karst aquifers pose a major challenge for hydrogeological investigations. Important procedures like the delineation of catchment areas for springs are hindered by the unknown locations and hydraulic properties of highly conductive karstic zones. In this work numerical modeling was employed as a tool in delineating catchment areas of several springs within a karst area in southwestern Germany. For this purpose, different distributive modeling approaches were implemented in the Finite Element simulation software Comsol Multiphysics®. The investigation focuses on the question to which degree the effect of karstification has to be taken into account for accurately simulating the hydraulic head distribution and the observed spring discharges. The results reveal that the representation of heterogeneities has a large influence on the delineation of the catchment areas. Not only the location of highly conductive elements but also their geometries play a major role for the resulting hydraulic head distribution and thus for catchment area delineation. The size distribution of the karst conduits derived from the numerical models agrees with knowledge from karst genesis. It was thus shown that numerical modeling is a useful tool for catchment delineation in karst aquifers based on results from different field observations.

  13. Geographic object-based delineation of neighborhoods of Accra, Ghana using QuickBird satellite imagery.

    Science.gov (United States)

    Stow, Douglas A; Lippitt, Christopher D; Weeks, John R

    2010-08-01

    The objective was to test GEographic Object-based Image Analysis (GEOBIA) techniques for delineating neighborhoods of Accra, Ghana using QuickBird multispectral imagery. Two approaches to aggregating census enumeration areas (EAs) based on image-derived measures of vegetation objects were tested: (1) merging adjacent EAs according to vegetation measures and (2) image segmentation. Both approaches exploit readily available functions within commercial GEOBIA software. Image-derived neighborhood maps were compared to a reference map derived by spatial clustering of slum index values (from census data), to provide a relative assessment of potential map utility. A size-constrained iterative segmentation approach to aggregation was more successful than standard image segmentation or feature merge techniques. The segmentation approaches account for size and shape characteristics, enabling more realistic neighborhood boundaries to be delineated. The percentage of vegetation patches within each EA yielded more realistic delineation of potential neighborhoods than mean vegetation patch size per EA.

  14. Automated, reproducible delineation of zones at risk from inundation by large volcanic debris flows

    Science.gov (United States)

    Schilling, Steve P.; Iverson, Richard M.

    1997-01-01

    Large debris flows can pose hazards to people and property downstream from volcanoes. We have developed a rapid, reproducible, objective, and inexpensive method to delineate distal debris-flow hazard zones. Our method employs the results of scaling and statistical analyses of the geometry of volcanic debris flows (lahars) to predict inundated valley cross-sectional areas (A) and planimetric areas (B) as functions of lahar volume. We use a range of specified lahar volumes to evaluate A and B. In a Geographic Information System (GIS) we employ the resulting range of predicted A and B to delineate gradations in inundation hazard, which is highest near the volcano and along valley thalwegs and diminishes as distances from the volcano and elevations above valley floors increase. Comparison of our computer-generated hazard maps with those constructed using traditional, field-based methods indicates that our method can provide an accurate means of delineating lahar hazard zones.

  15. Statistic analysis of the delineation of organs at risk for the treatment on the ENT area in conformational radiotherapy; Analyse statistique de la delineation des organes a risque pour les traitements de la sphere ORL en radiotherapie conformationnelle

    Energy Technology Data Exchange (ETDEWEB)

    Majdoub, M.; Diaz, J.C.; Kafrouni, H. [Societe DOSIsoft, Cachan (France); Graff, P.; Herlevin, K.; Peiffert, D. [Service de radiophysique medicale, centre Alexis-Vautrin, Vandceuvre-les-Nancy (France); Noel, A. [UMR 7039, centre de recherche en automatique de Nancy (Cran), universite CNRS, Vandceuvre-les-Nancy (France); Wolf, D. [Departement de radiotherapie, centre Alexis-Vautrin, Vandoeuvre-les-Nancy (France)

    2011-10-15

    The authors report the definition of relevant quantitative indicators for the characterization of the delineation of organs at risk in the ENT area. Based on the analysis of more than hundred medical files of patients treated by conformational irradiation for an upper aero-digestive tract cancer, the authors aim at developing a delineation standard by descriptive analysis of these indicators, and then at developing of automatic delineation error detection tool. Short communication

  16. Enhancements to TauDEM to support Rapid Watershed Delineation Services

    Science.gov (United States)

    Sazib, N. S.; Tarboton, D. G.

    2015-12-01

    Watersheds are widely recognized as the basic functional unit for water resources management studies and are important for a variety of problems in hydrology, ecology, and geomorphology. Nevertheless, delineating a watershed spread across a large region is still cumbersome due to the processing burden of working with large Digital Elevation Model. Terrain Analysis Using Digital Elevation Models (TauDEM) software supports the delineation of watersheds and stream networks from within desktop Geographic Information Systems. A rich set of watershed and stream network attributes are computed. However limitations of the TauDEM desktop tools are (1) it supports only one type of raster (tiff format) data (2) requires installation of software for parallel processing, and (3) data have to be in projected coordinate system. This paper presents enhancements to TauDEM that have been developed to extend its generality and support web based watershed delineation services. The enhancements of TauDEM include (1) reading and writing raster data with the open-source geospatial data abstraction library (GDAL) not limited to the tiff data format and (2) support for both geographic and projected coordinates. To support web services for rapid watershed delineation a procedure has been developed for sub setting the domain based on sub-catchments, with preprocessed data prepared for each catchment stored. This allows the watershed delineation to function locally, while extending to the full extent of watersheds using preprocessed information. Additional capabilities of this program includes computation of average watershed properties and geomorphic and channel network variables such as drainage density, shape factor, relief ratio and stream ordering. The updated version of TauDEM increases the practical applicability of it in terms of raster data type, size and coordinate system. The watershed delineation web service functionality is useful for web based software as service deployments

  17. Unsupervised boundary delineation of spinal neural foramina using a multi-feature and adaptive spectral segmentation.

    Science.gov (United States)

    He, Xiaoxu; Zhang, Heye; Landis, Mark; Sharma, Manas; Warrington, James; Li, Shuo

    2017-02-01

    As a common disease in the elderly, neural foramina stenosis (NFS) brings a significantly negative impact on the quality of life due to its symptoms including pain, disability, fall risk and depression. Accurate boundary delineation is essential to the clinical diagnosis and treatment of NFS. However, existing clinical routine is extremely tedious and inefficient due to the requirement of physicians' intensively manual delineation. Automated delineation is highly needed but faces big challenges from the complexity and variability in neural foramina images. In this paper, we propose a pure image-driven unsupervised boundary delineation framework for the automated neural foramina boundary delineation. This framework is based on a novel multi-feature and adaptive spectral segmentation (MFASS) algorithm. MFASS firstly utilizes the combination of region and edge features to generate reliable spectral features with a good separation between neural foramina and its surroundings, then estimates an optimal separation threshold for each individual image to separate neural foramina from its surroundings. This self-adjusted optimal separation threshold, estimated from spectral features, successfully overcome the diverse appearance and shape variations. With the robustness from the multi-feature fusion and the flexibility from the adaptively optimal separation threshold estimation, the proposed framework, based on MFASS, provides an automated and accurate boundary delineation. Validation was performed in 280 neural foramina MR images from 56 clinical subjects. Our method was benchmarked with manual boundary obtained by experienced physicians. Results demonstrate that the proposed method enjoys a high and stable consistency with experienced physicians (Dice: 90.58% ± 2.79%; SMAD: 0.5657 ± 0.1544 mm). Therefore, the proposed framework enables an efficient and accurate clinical tool in the diagnosis of neural foramina stenosis.

  18. Breast ultrasound lesions classification: a performance evaluation between manual delineation and computer segmentation

    Science.gov (United States)

    Yap, Moi Hoon; Yap, Chuin Hong

    2016-03-01

    Breast cancer is a threat to women worldwide. Manual delineation on breast ultrasound lesions is time-consuming and operator dependent. Computer segmentation of ultrasound breast lesions can be a challenging task due to the ill-defined lesions boundaries and issues related to the speckle noise in ultrasound images. The main contribution of this paper is to compare the performance of the computer classifier on the manual delineation and computer segmentation in malignant and benign lesions classification. This paper we implement computer segmentation using multifractal approach on a database consists of 120 images (50 malignant lesions and 70 benign lesions). The computer segmentation result is compared with the manual delineation using Jaccard Similarity Index (JSI). The result shows that the average JSI of 0.5010 (+/-0.2088) for malignant lesions and the average JSI of 0.6787 (+/-0.1290) for benign lesions. These results indicate lower agreement in malignant lesions due to the irregular shape while the higher agreement in benign lesions with regular shape. Further, we extract the shape descriptors for the lesions. By using logistic regression with 10 fold cross validation, the classification rates of manual delineation and computer segmentation are computed. The computer segmentation produced results with sensitivity 0.780 and specificity 0.871. However, the manual delineation produced sensitivity of 0.520 and specificity of 0.800. The results show that there are no clear differences between the delineation in MD and CS in benign lesions but the computer segmentation on malignant lesions shows better accuracy for computer classifier.

  19. Delineation of Fractured Aquifer Using Numerical Analysis (Factor of Resistivity Data in a Granite Terrain

    Directory of Open Access Journals (Sweden)

    Rolland Andrade

    2014-01-01

    Full Text Available In hard rock terrain, fractured aquifers comprise the major source of groundwater availability where the phreatic aquifer is desaturated. Identification of fracture zones in hard rock terrain and potential groundwater source delineation had been a perennial problem in hydrology. The purpose of this paper is to highlight the study over a small watershed area, in a granite terrain, wherein an attempt was made to delineate and map the fractured aquifer using numerical (factor analysis of the conventional vertical electrical sounding data, which was obscure in curve matching technique. This numerical approach in concatenation with resistivity imaging or other techniques would prove to be an effective tool in groundwater exploration.

  20. Sun protection

    Science.gov (United States)

    ... surfaces that reflect light, such as water, sand, concrete, snow, and areas that are painted white. DO ... protect the ears or sides of the face. Special clothing that protects the skin by absorbing UV ...

  1. Negotiating Protection

    DEFF Research Database (Denmark)

    Bille, Mikkel

    strategies are entangled in cultural, religious, and national identities. Using ethnographic methods, I investigate protection against selected risks: harm from evil eyes, violation of domestic sanctity, and cultural heritage dilapidation. Protection against these risks is examined through studies...

  2. Sun Protection

    Science.gov (United States)

    ... 100% UV ray protection (look for models that advertise both UVB and UVA protection). Use a broad- ... feeds Follow FDA on Twitter Follow FDA on Facebook View FDA videos on YouTube View FDA photos ...

  3. Differential assessment of designations of wetland status using two delineation methods.

    Science.gov (United States)

    Wu, Meiyin; Kalma, Dennis; Treadwell-Steitz, Carol

    2014-07-01

    Two different methods are commonly used to delineate and characterize wetlands. The U.S. Army Corps of Engineers (ACOE) delineation method uses field observation of hydrology, soils, and vegetation. The U.S. Fish and Wildlife Service's National Wetland Inventory Program (NWI) relies on remote sensing and photointerpretation. This study compared designations of wetland status at selected study sites using both methods. Twenty wetlands from the Wetland Boundaries Map of the Ausable-Boquet River Basin (created using the revised NWI method) in the Ausable River watershed in Essex and Clinton Counties, NY, were selected for this study. Sampling sites within and beyond the NWI wetland boundaries were selected. During the summers of 2008 and 2009, wetland hydrology, soils, and vegetation were examined for wetland indicators following the methods described in the ACOE delineation manual. The study shows that the two methods agree at 78 % of the sampling sites and disagree at 22 % of the sites. Ninety percent of the sampling locations within the wetland boundaries on the NWI maps were categorized as ACOE wetlands with all three ACOE wetland indicators present. A binary linear logistic regression model analyzed the relationship between the designations of the two methods. The outcome of the model indicates that 83 % of the time, the two wetland designation methods agree. When discrepancies are found, it is the presence or absence of wetland hydrology and vegetation that causes the differences in delineation.

  4. Integrating Ensemble Data Assimilation and Indicator Geostatistics to Delineate Hydrofacies Spatial Distribution

    Science.gov (United States)

    Song, X.; Chen, X.; Ye, M.; Dai, Z.; Hammond, G. E.

    2015-12-01

    We present a new framework for delineating spatial distributions of hydrofacies from indirect data by linking ensemble-based data assimilation method (e.g., Ensemble Kalman filter, EnKF) with indicator geostatistics based on transition probability. The nature of ensemble data assimilation makes the framework efficient and flexible to integrate various types of observation data. We leveraged the level set concept to establish transformations between discrete hydrofacies and continuous variables, which is a critical element to implement ensemble data assimilation methods for hydrofacies delineation. T-PROGS is used to generate realizations of hydrofacies fields given conditioning points. An additional quenching step of T-PROGS is taken to preserve spatial structure of updated hydrofacies after each data assimilation step. This new method is illustrated by a two-dimensional (2-D) synthetic study in which transient hydraulic head data resulting from pumping is assimilated to delineate hydrofacies distribution. Our results showed that the proposed framework was able to characterize hydrofacies distribution and their associated permeability with adequate accuracy even with limited direct hydrofacies data. This method may find broader applications in facies delineation using other types of indirect measurements, such as tracer tests and geophysical surveys.

  5. Resource Documentation and Recharge Area Delineation of a Large Fluvial Karst System: Carroll Cave, Missouri

    Science.gov (United States)

    Located along Wet Glaize Creek in the central Missouri Ozarks, Toronto Spring is a distributary spring system where surface stream flow mixes with flow from the Carroll Cave system. Following recharge area delineations for Thunder River and Confusion Creek in Carroll Cave, flow from these rivers wa...

  6. Delineation of Roles and Functions of Respiratory Therapy Personnel. Final Report.

    Science.gov (United States)

    American Association for Respiratory Therapy, Dallas, TX.

    Frequently assigned tasks performed by qualified respiratory therapy personnel are delineated in the document in such a manner that proficiency examinations within the profession can be prepared from them. Four distinct proficiency levels are identified and defined. Due to the fact that proficiency examinations will be assigned for them,…

  7. Interobserver delineation uncertainty in involved-node radiation therapy (INRT) for early-stage Hodgkin lymphoma

    DEFF Research Database (Denmark)

    Aznar, Marianne C; Girinsky, Theodore; Berthelsen, Anne Kiil

    2017-01-01

    BACKGROUND AND PURPOSE: In early-stage classical Hodgkin lymphoma (HL) the target volume nowadays consists of the volume of the originally involved nodes. Delineation of this volume on a post-chemotherapy CT-scan is challenging. We report on the interobserver variability in target volume definiti...

  8. The integration of geology, geophysics, petrophysics and petroleum engineering in reservoir delineation, description and management

    Energy Technology Data Exchange (ETDEWEB)

    1991-01-01

    This book covers the proceedings of the first Archie Conference. Topics covered include: reservoir characterization: petrophysical formation evaluation; reservoir properties prediction; origin, description and evaluation of fractured reservoirs; 2-D and 3-D in seismic reservoir delineation and development, and the utilization of geoscience and engineering technology to increase hydrocarbon recovery.

  9. Delineating wetland catchments and modeling hydrologic connectivity using lidar data and aerial imagery

    Science.gov (United States)

    Wu, Qiusheng; Lane, Charles R.

    2017-07-01

    In traditional watershed delineation and topographic modeling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM) to enforce flow continuity of water across the topographic surface to the watershed outlets. In reality, however, many depressions in the DEM are actual wetland landscape features with seasonal to permanent inundation patterning characterized by nested hierarchical structures and dynamic filling-spilling-merging surface-water hydrological processes. Differentiating and appropriately processing such ecohydrologically meaningful features remains a major technical terrain-processing challenge, particularly as high-resolution spatial data are increasingly used to support modeling and geographic analysis needs. The objectives of this study were to delineate hierarchical wetland catchments and model their hydrologic connectivity using high-resolution lidar data and aerial imagery. The graph-theory-based contour tree method was used to delineate the hierarchical wetland catchments and characterize their geometric and topological properties. Potential hydrologic connectivity between wetlands and streams were simulated using the least-cost-path algorithm. The resulting flow network delineated potential flow paths connecting wetland depressions to each other or to the river network on scales finer than those available through the National Hydrography Dataset. The results demonstrated that our proposed framework is promising for improving overland flow simulation and hydrologic connectivity analysis.

  10. Inter-observer delineation uncertainty in radiotherapy of peripheral lung tumours

    DEFF Research Database (Denmark)

    Persson, Gitte Fredberg; Nygaard, Ditte Eklund; Roed, Anders Peter

    was included in the study. In our clinical protocol the contrast enhanced PET/CT scan is primarily analysed by a specialist in nuclear medicine and a radiologists together. The PET positive volume is delineated by the specialist in nuclear medicine and only the CT scan and this contour is imported to Eclipse...

  11. A wavelet-based ECG delineation algorithm for 32-bit integer online processing

    Directory of Open Access Journals (Sweden)

    Chiari Lorenzo

    2011-04-01

    Full Text Available Abstract Background Since the first well-known electrocardiogram (ECG delineator based on Wavelet Transform (WT presented by Li et al. in 1995, a significant research effort has been devoted to the exploitation of this promising method. Its ability to reliably delineate the major waveform components (mono- or bi-phasic P wave, QRS, and mono- or bi-phasic T wave would make it a suitable candidate for efficient online processing of ambulatory ECG signals. Unfortunately, previous implementations of this method adopt non-linear operators such as root mean square (RMS or floating point algebra, which are computationally demanding. Methods This paper presents a 32-bit integer, linear algebra advanced approach to online QRS detection and P-QRS-T waves delineation of a single lead ECG signal, based on WT. Results The QRS detector performance was validated on the MIT-BIH Arrhythmia Database (sensitivity Se = 99.77%, positive predictive value P+ = 99.86%, on 109010 annotated beats and on the European ST-T Database (Se = 99.81%, P+ = 99.56%, on 788050 annotated beats. The ECG delineator was validated on the QT Database, showing a mean error between manual and automatic annotation below 1.5 samples for all fiducial points: P-onset, P-peak, P-offset, QRS-onset, QRS-offset, T-peak, T-offset, and a mean standard deviation comparable to other established methods. Conclusions The proposed algorithm exhibits reliable QRS detection as well as accurate ECG delineation, in spite of a simple structure built on integer linear algebra.

  12. Global biogeography of reef fishes: a hierarchical quantitative delineation of regions.

    Science.gov (United States)

    Kulbicki, Michel; Parravicini, Valeriano; Bellwood, David R; Arias-Gonzàlez, Ernesto; Chabanet, Pascale; Floeter, Sergio R; Friedlander, Alan; McPherson, Jana; Myers, Robert E; Vigliola, Laurent; Mouillot, David

    2013-01-01

    Delineating regions is an important first step in understanding the evolution and biogeography of faunas. However, quantitative approaches are often limited at a global scale, particularly in the marine realm. Reef fishes are the most diversified group of marine fishes, and compared to most other phyla, their taxonomy and geographical distributions are relatively well known. Based on 169 checklists spread across all tropical oceans, the present work aims to quantitatively delineate biogeographical entities for reef fishes at a global scale. Four different classifications were used to account for uncertainty related to species identification and the quality of checklists. The four classifications delivered converging results, with biogeographical entities that can be hierarchically delineated into realms, regions and provinces. All classifications indicated that the Indo-Pacific has a weak internal structure, with a high similarity from east to west. In contrast, the Atlantic and the Eastern Tropical Pacific were more strongly structured, which may be related to the higher levels of endemism in these two realms. The "Coral Triangle", an area of the Indo-Pacific which contains the highest species diversity for reef fishes, was not clearly delineated by its species composition. Our results show a global concordance with recent works based upon endemism, environmental factors, expert knowledge, or their combination. Our quantitative delineation of biogeographical entities, however, tests the robustness of the results and yields easily replicated patterns. The similarity between our results and those from other phyla, such as corals, suggests that our approach may be of broad utility in describing and understanding global marine biodiversity patterns.

  13. Protecting the Water Quality of Carroll Cave and Toronto Springs, Missouri, Through Groundwater Recharge Area Delineation of Groundwater Recharge Areas

    Science.gov (United States)

    In a karst area the relationship between activities occurring on the surface and the overall health of the subsurface environment are highly interconnected. However the complex nature of karst flow systems can often make identification of these connections difficult. Carroll Cave a large stream cave...

  14. Evaluation of the Customer Satisfaction Index for Wellhead Blowout Preventers of China's Petroleum Industry--A new method based on PLS%中国石油井口防喷器用户满意指数测评 --基于偏最小二乘法

    Institute of Scientific and Technical Information of China (English)

    张鹏; 胡启国; 韩侠; 张斌

    2005-01-01

    This paper establishes an evaluation model of the customer satisfaction index for the wellhead blowout preventers of China's petroleum industry based on evaluation models of the customer satisfaction index at home and aboard, and by considering the consuming situation in China and the features of the China's petroleum industry. For the existence of: (1) multiple correlations among the factors in the model; (2) the variables need to be explained, but that are hard to observe; (3) the customer satisfaction degree of observation variables appears the shape of skewness or two or three peaks, the correlations between the satisfaction index and its factors cannot be described by common multiple regression. This paper uses a partial least squares (PLS) method based on principal components and typical correlative analysis to solve the problem. When PLS is used in the model of the customer satisfaction index of the wellhead blowout preventers, the latent variables and the explanation degree coefficient of the manifest variable to the corresponding latent variables are estimated by PLS path analysis, and the influencing coefficient among the latent variables in the model is estimated by PLS regression analysis. PLS is also be used to calculate and analyze the model and disclose the correlations among the structural variables as well as the correlation between structural variables and its corresponding observation variables, evaluating results of which provide useful information for petroleum industry to improve the product quality and to the enhancement of the customer satisfaction to the product.

  15. Hurricane damaged fixed platforms and wellhead structures

    Energy Technology Data Exchange (ETDEWEB)

    Shuttleworth, E.P.; Frieze, P.A.

    1998-03-01

    The objective of this study was to review data on damages to offshore platforms with a view to determining their suitability for further exploitation and analysis through a preliminary assessment of trends in the data when viewed from a risk standpoint. To realise this objective, a database on hurricane and other storm related damages was generated and past design practice, particularly concerning environmental load levels, was established. Information was gathered on extreme wave heights, damages, platform details, pushover analyses and structural frame load tests. The information was obtained through: a literature survey of journals, conference proceedings, design codes and guidelines; approaches to organisations in the offshore industry with significant experience of hurricanes, storm-damaged structures and pushover analyses; and interrogation of three major databases on offshore storm and other damages - PMB, MMS and WOAD. (author)

  16. Inter-observer variation in delineation of the heart and left anterior descending coronary artery in radiotherapy for breast cancer

    DEFF Research Database (Denmark)

    Lorenzen, Ebbe L.; Taylor, Carolyn W.; Maraldo, Maja;

    2013-01-01

    BACKGROUND AND PURPOSE: To determine the extent of inter-observer variation in delineation of the heart and left anterior descending coronary artery (LADCA) and its impact on estimated doses. METHODS AND MATERIALS: Nine observers from five centres delineated the heart and LADCA on fifteen patient...

  17. A new method for individual tree delineation and undergrowth removal from high resolution airborne LiDAR

    NARCIS (Netherlands)

    Abd Rahman, M.Z.; Gorte, B.G.H.; Bucksch, A.K.

    2009-01-01

    High density airborne LiDAR, for example FLI-MAP 400 data, has opened an opportunity for individual tree measurement. This paper presents a method for individual tree delineation and undergrowth vegetation removal in forest area. The delineation of individual trees involves two steps namely 1) tree

  18. ASSESSING THE AGREEMENT BETWEEN EO-BASED SEMI-AUTOMATED LANDSLIDE MAPS WITH FUZZY MANUAL LANDSLIDE DELINEATION

    Directory of Open Access Journals (Sweden)

    F. Albrecht

    2017-09-01

    Full Text Available Landslide mapping benefits from the ever increasing availability of Earth Observation (EO data resulting from programmes like the Copernicus Sentinel missions and improved infrastructure for data access. However, there arises the need for improved automated landslide information extraction processes from EO data while the dominant method is still manual delineation. Object-based image analysis (OBIA provides the means for the fast and efficient extraction of landslide information. To prove its quality, automated results are often compared to manually delineated landslide maps. Although there is awareness of the uncertainties inherent in manual delineations, there is a lack of understanding how they affect the levels of agreement in a direct comparison of OBIA-derived landslide maps and manually derived landslide maps. In order to provide an improved reference, we present a fuzzy approach for the manual delineation of landslides on optical satellite images, thereby making the inherent uncertainties of the delineation explicit. The fuzzy manual delineation and the OBIA classification are compared by accuracy metrics accepted in the remote sensing community. We have tested this approach for high resolution (HR satellite images of three large landslides in Austria and Italy. We were able to show that the deviation of the OBIA result from the manual delineation can mainly be attributed to the uncertainty inherent in the manual delineation process, a relevant issue for the design of validation processes for OBIA-derived landslide maps.

  19. Variability in prostate and seminal vesicle delineations defined on magnetic resonance images, a multi-observer, -center and -sequence study

    DEFF Research Database (Denmark)

    Nyholm, Tufve; Jonsson, Joakim; Söderström, Karin

    2013-01-01

    BACKGROUND: The use of magnetic resonance (MR) imaging as a part of preparation for radiotherapy is increasing. For delineation of the prostate several publications have shown decreased delineation variability using MR compared to computed tomography (CT). The purpose of the present work...

  20. Use of spectral decomposition technique for delineation of channels at Solar gas discovery, offshore West Nile Delta, Egypt

    Directory of Open Access Journals (Sweden)

    Adel A.A. Othman

    2016-03-01

    In this paper, spectral decomposition technique is applied to the imaging and mapping of bed thickness, geologic discontinuities and channel delineation at Solar discovery. From the study, two distinctively different channels (gas bearing “Red channel” and water bearing “Yellow channel” were delineated in the area, and are proven by the drilled well, and some stratigraphic features are identified.

  1. A new method for individual tree delineation and undergrowth removal from high resolution airborne LiDAR

    NARCIS (Netherlands)

    Abd Rahman, M.Z.; Gorte, B.G.H.; Bucksch, A.K.

    2009-01-01

    High density airborne LiDAR, for example FLI-MAP 400 data, has opened an opportunity for individual tree measurement. This paper presents a method for individual tree delineation and undergrowth vegetation removal in forest area. The delineation of individual trees involves two steps namely 1) tree

  2. Tomographic inversion of prismatic reflections for the delineation of steeply dipping structures; Inversion tomographique des reflexions prismatiques en vue de la delineation des structures tres pentees

    Energy Technology Data Exchange (ETDEWEB)

    Cavalca, M.

    2005-11-15

    Seismic imaging of salt flanks still remains a challenge for oil exploration. We propose here to exploit the kinematic information contained in prismatic reflections for the delineation of steeply dipping structures, such as faults or overhangs of salt bodies. This double reflection (on a steeply dipping structure and on a sedimentary interface) contains in fact precious information on the geometry of such structures, information that we try to exploit in travel-time tomography. We first carry out a precise kinematic analysis of these unusual reflections, to better understand under which conditions prismatic reflections can be observed in surface data; and we propose some interpretative guidelines, of great help for identifying such reflections in seismic data. We then study the tomographic inversion of prismatic reflections. Our first attempts at inverting prismatic reflections by standard travel-time tomography reveal a major difficulty due to the possible non definition of the standard forward map. We thus propose a new formulation of travel-time tomography which ensures the definition of the forward map and therefore a robust inversion of prismatic reflections. This approach shows its efficiency for delineating steeply dipping (and/or overhanging) structures on different synthetic experiments. We finally illustrate the benefit of jointly using the information contained in prismatic reflections and in primary events for the velocity model building (simultaneous determination of velocities and interface geometries), through the joint inversion of events interpreted and picked on a realistic synthetic dataset (BP-AIT 2004). (author)

  3. SU-E-J-07: A Functional MR Protocol for the Pancreatic Tumor Delineation

    Energy Technology Data Exchange (ETDEWEB)

    Andreychenko, A; Heerkens, H; Meijer, G; Vulpen, M van; Lagendijk, J; Berg, C van den [UMC Utrecht, Utrecht, Utrecht (Netherlands)

    2014-06-01

    Purpose: Pancreatic cancer is one of the cancers with the poorest survival prognosis. At the time of diagnosis most of pancreatic cancers are unresectable and those patients can be treated by radiotherapy. Radiotherapy for pancreatic cancer is limited due to uncertainties in CT-based delineations. MRI provides an excellent soft tissue contrast. Here, an MR protocol is developed to improve delineations for radiotherapy treatment of pancreatic cancer. In a later stage this protocol can also be used for on-line visualization of the pancreas during MRI guided treatments. Methods: Nine pancreatic cancer patients were included. The MR protocol included T2 weighted(T2w), T1 weighted(T1w), diffusion weighted(DWI) and dynamic contrast enhanced(DCE) techniques. The tumor was delineated on T2w and T1w MRI by an experienced radiation oncologist. Healthy pancreas or pancreatitis (assigned by the oncologist based on T2w) areas were also delineated. Apparent diffusion coefficient(ADC), and area under the curve(AUC)/time to peak(TTP) maps were obtained from DWI and DCE scans, respectively. Results: A clear demarcation of tumor area was visible on b800 DWI images in 5 patients. ADC maps of those patients characterized tumor as an area with restricted water diffusion. Tumor delineations based on solely DCE were possible in 7 patients. In 6 of those patients AUC maps demonstrated tumor heterogeneity: a hypointense area with a hyperintense ring. TTP values clearly discriminated the tumor and the healthy pancreas but could not distinguish tumor and the pancreatitis accurately. Conclusion: MR imaging results in a more pronounced tumor contrast than contrast enhanced CT. The addition of quantitative, functional MRI provides valuable, additional information to the radiation oncologist on the spatial tumor extent by discriminating tumor from the healthy pancreas(TTP, DWI) and characterizing the tumor(ADC). Our findings indicate that tumor delineation in pancreatic cancer can greatly

  4. DOE Standard: Fire protection design criteria

    Energy Technology Data Exchange (ETDEWEB)

    1999-07-01

    The development of this Standard reflects the fact that national consensus standards and other design criteria do not comprehensively or, in some cases, adequately address fire protection issues at DOE facilities. This Standard provides supplemental fire protection guidance applicable to the design and construction of DOE facilities and site features (such as water distribution systems) that are also provided for fire protection. It is intended to be used in conjunction with the applicable building code, National Fire Protection Association (NFPA) Codes and Standards, and any other applicable DOE construction criteria. This Standard replaces certain mandatory fire protection requirements that were formerly in DOE 5480.7A, ``Fire Protection``, and DOE 6430.1A, ``General Design Criteria``. It also contains the fire protection guidelines from two (now canceled) draft standards: ``Glove Box Fire Protection`` and ``Filter Plenum Fire Protection``. (Note: This Standard does not supersede the requirements of DOE 5480.7A and DOE 6430.1A where these DOE Orders are currently applicable under existing contracts.) This Standard, along with the criteria delineated in Section 3, constitutes the basic criteria for satisfying DOE fire and life safety objectives for the design and construction or renovation of DOE facilities.

  5. Formulating an ecosystem approach to environmental protection

    Science.gov (United States)

    Gonzalez, Otto J.

    1996-09-01

    The U.S. Environmental Protection Agency (EPA) has embraced a new strategy of environmental protection that is place-driven rather than program-driven. This new approach focuses on the protection of entire ecosystems. To develop an effective strategy of ecosystem protection, however, EPA will need to: (1) determine how to define and delineate ecosystems and (2) categorize threats to individual ecosystems and priority rank ecosystems at risk. Current definitions of ecosystem in use at EPA are inadequate for meaningful use in a management or regulatory context. A landscape-based definition that describes an ecosystem as a volumetric unit delineated by climatic and landscape features is suggested. Following this definition, ecosystems are organized hierarchically, from megaecosystems, which exist on a continental scale (e.g., Great Lakes), to small local ecosystems. Threats to ecosystems can generally be categorized as: (1) ecosystem degradation (occurs mainly through pollution) (2) ecosystem alteration (physical changes such as water diversion), and (3) ecosystem removal (e.g., conversion of wetlands or forest to urban or agricultural lands). Level of threat (i.e., how imminent), and distance from desired future condition are also important in evaluating threats to ecosystems. Category of threat, level of threat, and “distance” from desired future condition can be combined into a three-dimensional ranking system for ecosystems at risk. The purpose of the proposed ranking system is to suggest a preliminary framework for agencies such as EPA to prioritize responses to ecosystems at risk.

  6. Digital soil mapping for the support of delineation of Areas Facing Natural Constraints defined by common European biophysical criteria

    Science.gov (United States)

    Pásztor, László; Bakacsi, Zsófia; Laborczi, Annamária; Takács, Katalin; Szatmári, Gábor; Tóth, Tibor; Szabó, József

    2016-04-01

    One of the main objectives of the EU's Common Agricultural Policy is to encourage maintaining agricultural production in Areas Facing Natural Constraints (ANC) in order to sustain agricultural production and use natural resources, in such a way to secure both stable production and income to farmers and to protect the environment. ANC assignment has both ecological and severe economical aspects. Recently the delimitation of ANCs is suggested to be carried out by using common biophysical diagnostic criteria on low soil productivity and poor climate conditions all over Europe. The criterion system was elaborated and has been repeatedly upgraded by JRC. The operational implementation is under member state competence. This process requires application of available soil databases and proper thematic and spatial inference methods. In our paper we present the inferences applied for the latest identification and delineation of areas with low soil productivity in Hungary according to JRC biophysical criteria related to soil: limited soil drainage, texture and stoniness (coarse texture, heavy clay, vertic properties), shallow rooting depth, chemical properties (salinity, sodicity, low pH). The compilation of target specific maps were based on the available legacy and recently collected data. In the present work three different data sources were used. The most relevant available data were queried from the datasets for each mapped criterion for either direct application or for the compilation a suitable, synthetic (non-measured) parameter. In some cases the values of the target variable originated from only one, in other cases from more databases. The reference dataset used in the mapping process was set up after substantial statistical analysis and filtering. It consisted of the values of the target variable attributed to the finally selected georeferenced locations. For spatial inference regression kriging was applied. Accuracy assessment was carried out by Leave One Out

  7. Body-wide hierarchical fuzzy modeling, recognition, and delineation of anatomy in medical images.

    Science.gov (United States)

    Udupa, Jayaram K; Odhner, Dewey; Zhao, Liming; Tong, Yubing; Matsumoto, Monica M S; Ciesielski, Krzysztof C; Falcao, Alexandre X; Vaideeswaran, Pavithra; Ciesielski, Victoria; Saboury, Babak; Mohammadianrasanani, Syedmehrdad; Sin, Sanghun; Arens, Raanan; Torigian, Drew A

    2014-07-01

    To make Quantitative Radiology (QR) a reality in radiological practice, computerized body-wide Automatic Anatomy Recognition (AAR) becomes essential. With the goal of building a general AAR system that is not tied to any specific organ system, body region, or image modality, this paper presents an AAR methodology for localizing and delineating all major organs in different body regions based on fuzzy modeling ideas and a tight integration of fuzzy models with an Iterative Relative Fuzzy Connectedness (IRFC) delineation algorithm. The methodology consists of five main steps: (a) gathering image data for both building models and testing the AAR algorithms from patient image sets existing in our health system; (b) formulating precise definitions of each body region and organ and delineating them following these definitions; (c) building hierarchical fuzzy anatomy models of organs for each body region; (d) recognizing and locating organs in given images by employing the hierarchical models; and (e) delineating the organs following the hierarchy. In Step (c), we explicitly encode object size and positional relationships into the hierarchy and subsequently exploit this information in object recognition in Step (d) and delineation in Step (e). Modality-independent and dependent aspects are carefully separated in model encoding. At the model building stage, a learning process is carried out for rehearsing an optimal threshold-based object recognition method. The recognition process in Step (d) starts from large, well-defined objects and proceeds down the hierarchy in a global to local manner. A fuzzy model-based version of the IRFC algorithm is created by naturally integrating the fuzzy model constraints into the delineation algorithm. The AAR system is tested on three body regions - thorax (on CT), abdomen (on CT and MRI), and neck (on MRI and CT) - involving a total of over 35 organs and 130 data sets (the total used for model building and testing). The training and

  8. Geospatial datasets for watershed delineation and characterization used in the Hawaii StreamStats web application

    Science.gov (United States)

    Rea, Alan; Skinner, Kenneth D.

    2012-01-01

    The U.S. Geological Survey Hawaii StreamStats application uses an integrated suite of raster and vector geospatial datasets to delineate and characterize watersheds. The geospatial datasets used to delineate and characterize watersheds on the StreamStats website, and the methods used to develop the datasets are described in this report. The datasets for Hawaii were derived primarily from 10 meter resolution National Elevation Dataset (NED) elevation models, and the National Hydrography Dataset (NHD), using a set of procedures designed to enforce the drainage pattern from the NHD into the NED, resulting in an integrated suite of elevation-derived datasets. Additional sources of data used for computing basin characteristics include precipitation, land cover, soil permeability, and elevation-derivative datasets. The report also includes links for metadata and downloads of the geospatial datasets.

  9. A Supervised Approach to Delineate Built-Up Areas for Monitoring and Analysis of Settlements

    Directory of Open Access Journals (Sweden)

    Oliver Harig

    2016-08-01

    Full Text Available Monitoring urban growth and measuring urban sprawl is essential for improving urban planning and development. In this paper, we introduce a supervised approach for the delineation of urban areas using commonly available topographic data and commercial GIS software. The method uses a supervised parameter optimization approach along with buffer-based quality measuring method. The approach was developed, tested and evaluated in terms of possible usage in monitoring built-up areas in spatial science at a very fine-grained level. Results show that built-up area boundaries can be delineated automatically with higher quality compared to the settlement boundaries actually used. The approach has been applied to 166 settlement bodies in Germany. The study shows a very efficient way of extracting settlement boundaries from topographic data and maps and contributes to the quantification and monitoring of urban sprawl. Moreover, the findings from this study can potentially guide policy makers and urban planners from other countries.

  10. Electromagnetic Delineation and Confirmation of Areas of Groundwater-Surface Water Interaction in a Large River

    Science.gov (United States)

    Nadeau, J.; Dawe, M. R.; Butler, K. E.; Macquarrie, K. T.

    2004-05-01

    Riverbank filtration systems are typically located in heterogeneous alluvial river valley deposits. Delineation of riverbed areas where there is downward river water infiltration is important for determining the fluxes, quality, and travel time of water supplied to production wells. Efficient methods of delineation are especially required in large rivers that may also have relatively large water depths. A portion of the City of Fredericton well field recharge zone lies beneath the adjacent Saint John River, where a discontinuity in the clay/silt aquitard may allow hydraulic connection between the esker-like aquifer and the river. In this project we have investigated the potential for using electromagnetic methods to delineate zones of low electrical conductivity. Such zones, in a fresh water environment, suggest the absence of clay/silt materials. During the summers of 2001 and 2002, a total of 120 km of electromagnetic data were acquired using the Geonics EM31 and EM34 ground conductivity meters. The survey was carried out using an outboard-motor-powered canoe and raft with onboard DGPS system. Both electromagnetic instruments were operated in the vertical dipole mode, thereby providing maximum depths of exploration of approximately 30 meters. The water depths in the survey area fall in the range where the EM31 and EM34 results are very sensitive to the conductivity structure. We applied a novel bathymetry correction approach to compensate for water depth effects. Contouring of the apparent conductivity data revealed a conductivity low with an approximate area of 6 hectares. The absence of the clay/silt aquitard was confirmed by high resolution seismic profiling and drilling and sampling of riverbed sediments. Further confirmation of river water infiltration has been provided by hydraulic data from mini-piezometers and temperature time series collected beneath the riverbed. Apparent conductivity mapping proved to be a sensitive and efficient method for delineating

  11. Benchmark of Client and Server-Side Catchment Delineation Approaches on Web-Based Systems

    Science.gov (United States)

    Demir, I.; Sermet, M. Y.; Sit, M. A.

    2016-12-01

    Recent advances in internet and cyberinfrastructure technologies have provided the capability to acquire large scale spatial data from various gauges and sensor networks. The collection of environmental data increased demand for applications which are capable of managing and processing large-scale and high-resolution data sets. With the amount and resolution of data sets provided, one of the challenging tasks for organizing and customizing hydrological data sets is delineation of watersheds on demand. Watershed delineation is a process for creating a boundary that represents the contributing area for a specific control point or water outlet, with intent of characterization and analysis of portions of a study area. Although many GIS tools and software for watershed analysis are available on desktop systems, there is a need for web-based and client-side techniques for creating a dynamic and interactive environment for exploring hydrological data. In this project, we demonstrated several watershed delineation techniques on the web with various techniques implemented on the client-side using JavaScript and WebGL, and on the server-side using Python and C++. We also developed a client-side GPGPU (General Purpose Graphical Processing Unit) algorithm to analyze high-resolution terrain data for watershed delineation which allows parallelization using GPU. The web-based real-time analysis of watershed segmentation can be helpful for decision-makers and interested stakeholders while eliminating the need of installing complex software packages and dealing with large-scale data sets. Utilization of the client-side hardware resources also eliminates the need of servers due its crowdsourcing nature. Our goal for future work is to improve other hydrologic analysis methods such as rain flow tracking by adapting presented approaches.

  12. Delineation of Raw Plethysmograph using Wavelets for Mobile based Pulse Oximeters

    CERN Document Server

    Soni, Sangeeta

    2010-01-01

    The non-invasive pulse-oximeter is a crucial parameter in continuous monitoring systems. It plays a vital role from admission of the patient to surgeries with general anaesthesia. The paper proposes the application of wavelet transform to delineate the raw plethysmograph signals obtained from basic portable and mobile-powered electronic hardware. The paper primarily focuses on finding peaks and baseline from noisy infrared and red waveforms which are responsible for calculating heart-rate and oxygen saturation percentages.

  13. Multicenter evaluation of different target volume delineation concepts in pediatric Hodgkin's lymphoma. A case study.

    Science.gov (United States)

    Lütgendorf-Caucig, C; Fotina, I; Gallop-Evans, E; Claude, L; Lindh, J; Pelz, T; Knäusl, B; Georg, D; Pötter, R; Dieckmann, K

    2012-11-01

    In pediatric Hodgkin's lymphoma (PHL) improvements in imaging and multiagent chemotherapy have allowed for a reduction in target volume. The involved-node (IN) concept is being tested in several treatment regimens for adult Hodgkin's lymphoma. So far there is no consensus on the definition of the IN. To improve the reproducibility of the IN, we tested a new involved-node-level (INL) concept, using defined anatomical boundaries as basis for target delineation. The aim was to evaluate the feasibility of IN and INL concepts for PHL in terms of interobserver variability. The INL concept was defined for the neck and mediastinum by the PHL Radiotherapy Group based on accepted concepts for solid tumors. Seven radiation oncologists from six European centers contoured neck and mediastinal clinical target volumes (CTVs) of 2 patients according to the IN and the new INL concepts. The median CTVs, coefficient of variation (COV), and general conformity index (CI) were assessed. The intraclass correlation coefficient (ICC) for reliability of delineations was calculated. All observers agreed that INL is a feasible and practicable delineation concept resulting in stronger interobserver concordance than the IN (mediastinum CI(INL) = 0.39 vs. CI(IN) = 0.28, neck left CI(INL) = 0.33; CI(IN) = 0.18; neck right CI(INL) = 0.24, CI(IN) = 0.14). The COV showed less dispersion and the ICC indicated higher reliability of contouring for INL (ICC(INL) = 0.62, p < 0.05) as for IN (ICC(IN) = 0.40, p < 0.05). INL is a practical and feasible alternative to IN resulting in more homogeneous target delineation, and it should be therefore considered as a future target volume concept in PHL.

  14. An improved method for detecting and delineating genomic regions with altered gene expression in cancer

    OpenAIRE

    2008-01-01

    Genomic regions with altered gene expression are a characteristic feature of cancer cells. We present a novel method for identifying such regions in gene expression maps. This method is based on total variation minimization, a classical signal restoration technique. In systematic evaluations, we show that our method combines top-notch detection performance with an ability to delineate relevant regions without excessive over-segmentation, making it a significant advance over existing methods. ...

  15. Delineating Floodplain in North Korea using Remote Sensing and Geographic Information System

    Science.gov (United States)

    Lim, J.; Lee, K. S.

    2015-12-01

    Korea has been divided into two countries after World War II. So environmental studies about North Korean are not easy and very limited. There were several flood damages every summer in North Korea since 1995, which induces lots of economic loss and agricultural production decrease. Delineating floodplain is indispensable to estimate the magnitude of flood damage and restore the flooded paddy field after unification. Remote Sensing (RS) can provide opportunity to study inaccessible area. In addition, flooding detection is possible. Several research groups study about flooding disaster using RS. Optical images and microwave images have been used in that field. Also, Digital topographic data have been used for flooding detection. Therefore, the purpose of this study is to investigate the land characteristics of floodplain by delineating floodplain in inaccessible North Korea using Landsat and digital topographic data. Landsat TM 5 images were used in this study. North Korea had severe flooding disaster since 1995. Among them 1995, 2007 and 2012 flooding are known for serious damages. Two Landsat images before and after flooding of each year were used to delineate floodplain. Study areas are Pyongyang City, Nampo City, North and South Hwanghae Province and South Pyongan Province. Floodplain are derived from overlaid classification image and flood-depth map. 1:25,000 scale digital topographic data were used to make flood-depth map. For land cover classification image enhancement and supervised classification with maximum likelihood classifier were used. Training areas were selected by visual interpretation using Daum-map which provides high resolution image of whole North Korea. The spatial characteristics of the floodplain were discussed based on floodplain map delineated in this study.

  16. Interim Regional Supplement to the Corps of Engineers Wetland Delineation Manual: Midwest Region

    Science.gov (United States)

    2008-09-01

    inundation. Ground-layer species include giant goldenrod (Solidago gigantea), red-stem aster (Aster puniceus), marsh milkweed (Asclepias incarnata...wetland delineation is designed to characterize the site in question rapidly. A balance must be established between the need to accomplish the work...quickly and the need to characterize the site’s heterogeneity accurately and at an appropriate scale. The following guidance on vegetation sampling is

  17. Relationship between Myers-Briggs Type Indicator and Gregorc Style Delineator.

    Science.gov (United States)

    Harasym, P H; Leong, E J; Juschka, B B; Lucier, G E; Lorscheider, F L

    1996-06-01

    The relationship between the Myers-briggs Type Indicator and Gregorc Style Delineator, and achievement was examined by administering these instruments to 259 first-year nursing students enrolled in an introductory human anatomy and physiology course. A principal component factor analysis using a varimax rotation of the scores from the two psychometric instruments, achievement examinations and an over-all grade point average indicated that each learning style from the Gregorc Style Delineator corresponds to certain traits on the Myers-Briggs Type Indicator. An individual who had a preference for the learning style of Concrete Sequential tended to have the traits of sensing and judging on the Myers-Briggs Type Indicator, while an individual who used the learning style of Concrete Random tended to have the traits of intuition and perceiving on the Myers-Briggs Type Indicator. One who had a preference for the learning style of Abstract Sequential tended to use the trait of thinking while another who used the learning style of Abstract Random tended to have the trait of feeling. The factor analysis also indicates no relationship of any scores of the traits on the Myers-Briggs Type Indicator or learning styles of the Gregorc Style Delineator with the examination scores achieved in the human anatomy and physiology course or to the students' over-all grade point average. However, factor analysis indicates that the Myers-Briggs Type Indicator traits of Judging vs Perceiving collapsed into the Sensing vs Intuition scale, and that the Gregorc Style Delineator consists of two bipolar scales that are different from those proposed by Gregorc.

  18. Automated delineation of radiotherapy volumes: are we going in the right direction?

    Science.gov (United States)

    Whitfield, G A; Price, P; Price, G J; Moore, C J

    2013-01-01

    Rapid and accurate delineation of target volumes and multiple organs at risk, within the enduring International Commission on Radiation Units and Measurement framework, is now hugely important in radiotherapy, owing to the rapid proliferation of intensity-modulated radiotherapy and the advent of four-dimensional image-guided adaption. Nevertheless, delineation is still generally clinically performed with little if any machine assistance, even though it is both time-consuming and prone to interobserver variation. Currently available segmentation tools include those based on image greyscale interrogation, statistical shape modelling and body atlas-based methods. However, all too often these are not able to match the accuracy of the expert clinician, which remains the universally acknowledged gold standard. In this article we suggest that current methods are fundamentally limited by their lack of ability to incorporate essential human clinical decision-making into the underlying models. Hybrid techniques that utilise prior knowledge, make sophisticated use of greyscale information and allow clinical expertise to be integrated are needed. This may require a change in focus from automated segmentation to machine-assisted delineation. Similarly, new metrics of image quality reflecting fitness for purpose would be extremely valuable. We conclude that methods need to be developed to take account of the clinician's expertise and honed visual processing capabilities as much as the underlying, clinically meaningful information content of the image data being interrogated. We illustrate our observations and suggestions through our own experiences with two software tools developed as part of research council-funded projects.

  19. Maritime Route Delineation using AIS Data from the Atlantic Coast of the US

    Energy Technology Data Exchange (ETDEWEB)

    Breithaupt, Stephen A.; Copping, Andrea; Tagestad, Jerry; Whiting, Jonathan

    2016-09-28

    This study examines maritime routes between ports along the Atlantic coast of the US, utilising Automated Identification System (AIS) data for the years 2010 through 2012. The delineation of vessel routes conducted in this study was motivated by development planned for offshore Wind Energy Areas (WEAs) along the Atlantic coast of the US and the need to evaluate the effect of these development areas on commercial shipping. To this end, available AIS data were processed to generate commercial vessel tracks for individual vessels, though cargo vessels are the focus in this study. The individual vessel tracks were sampled at transects placed along the Atlantic coast. The transect samples were analysed and partitioned by voyages between Atlantic ports to facilitate computation of vessel routes between ports. The route boundary analysis utilised a definition from UK guidance in which routes' boundaries encompassed 95% of the vessel traffic between ports. In addition to delineating route boundaries, we found multi-modal transverse distributions of vessels for well-travelled routes, which indicated preference for lanes of travel within the delineated routes.

  20. A Wavelet-Based ECG Delineation Method: Adaptation to an Experimental Electrograms with Manifested Global Ischemia.

    Science.gov (United States)

    Hejč, Jakub; Vítek, Martin; Ronzhina, Marina; Nováková, Marie; Kolářová, Jana

    2015-09-01

    We present a novel wavelet-based ECG delineation method with robust classification of P wave and T wave. The work is aimed on an adaptation of the method to long-term experimental electrograms (EGs) measured on isolated rabbit heart and to evaluate the effect of global ischemia in experimental EGs on delineation performance. The algorithm was tested on a set of 263 rabbit EGs with established reference points and on human signals using standard Common Standards for Quantitative Electrocardiography Standard Database (CSEDB). On CSEDB, standard deviation (SD) of measured errors satisfies given criterions in each point and the results are comparable to other published works. In rabbit signals, our QRS detector reached sensitivity of 99.87% and positive predictivity of 99.89% despite an overlay of spectral components of QRS complex, P wave and power line noise. The algorithm shows great performance in suppressing J-point elevation and reached low overall error in both, QRS onset (SD = 2.8 ms) and QRS offset (SD = 4.3 ms) delineation. T wave offset is detected with acceptable error (SD = 12.9 ms) and sensitivity nearly 99%. Variance of the errors during global ischemia remains relatively stable, however more failures in detection of T wave and P wave occur. Due to differences in spectral and timing characteristics parameters of rabbit based algorithm have to be highly adaptable and set more precisely than in human ECG signals to reach acceptable performance.

  1. A tree canopy height delineation method based on Morphological Reconstruction—Open Crown Decomposition

    Science.gov (United States)

    Liu, Q.; Jing, L.; Li, Y.; Tang, Y.; Li, H.; Lin, Q.

    2016-04-01

    For the purpose of forest management, high resolution LIDAR and optical remote sensing imageries are used for treetop detection, tree crown delineation, and classification. The purpose of this study is to develop a self-adjusted dominant scales calculation method and a new crown horizontal cutting method of tree canopy height model (CHM) to detect and delineate tree crowns from LIDAR, under the hypothesis that a treetop is radiometric or altitudinal maximum and tree crowns consist of multi-scale branches. The major concept of the method is to develop an automatic selecting strategy of feature scale on CHM, and a multi-scale morphological reconstruction-open crown decomposition (MRCD) to get morphological multi-scale features of CHM by: cutting CHM from treetop to the ground; analysing and refining the dominant multiple scales with differential horizontal profiles to get treetops; segmenting LiDAR CHM using watershed a segmentation approach marked with MRCD treetops. This method has solved the problems of false detection of CHM side-surface extracted by the traditional morphological opening canopy segment (MOCS) method. The novel MRCD delineates more accurate and quantitative multi-scale features of CHM, and enables more accurate detection and segmentation of treetops and crown. Besides, the MRCD method can also be extended to high optical remote sensing tree crown extraction. In an experiment on aerial LiDAR CHM of a forest of multi-scale tree crowns, the proposed method yielded high-quality tree crown maps.

  2. An efficient approach to 3D single tree-crown delineation in LiDAR data

    Science.gov (United States)

    Mongus, Domen; Žalik, Borut

    2015-10-01

    This paper proposes a new method for 3D delineation of single tree-crowns in LiDAR data by exploiting the complementaries of treetop and tree trunk detections. A unified mathematical framework is provided based on the graph theory, allowing for all the segmentations to be achieved using marker-controlled watersheds. Treetops are defined by detecting concave neighbourhoods within the canopy height model using locally fitted surfaces. These serve as markers for watershed segmentation of the canopy layer where possible oversegmentation is reduced by merging the regions based on their heights, areas, and shapes. Additional tree crowns are delineated from mid- and under-storey layers based on tree trunk detection. A new approach for estimating the verticalities of the points' distributions is proposed for this purpose. The watershed segmentation is then applied on a density function within the voxel space, while boundaries of delineated trees from the canopy layer are used to prevent the overspreading of regions. The experiments show an approximately 6% increase in the efficiency of the proposed treetop definition based on locally fitted surfaces in comparison with the traditionally used local maxima of the smoothed canopy height model. In addition, 4% increase in the efficiency is achieved by the proposed tree trunk detection. Although the tree trunk detection alone is dependent on the data density, supplementing it with the treetop detection the proposed approach is efficient even when dealing with low density point-clouds.

  3. Delineating native and invasive plant functional groups in shrub-steppe vegetation using bidirectional reflectance

    Science.gov (United States)

    Naupari, Javier A.; Vierling, Lee A.; Eitel, Jan U. H.

    2013-01-01

    Delineating invasive and native plant types using remote sensing is important for managing rangelands. Remote characterization of rangeland vegetation often utilizes only the nadir view, which can be complicated by background soil reflectance. We therefore collected bidirectional radiometric measurements on a shrub-steppe vegetated landscape throughout the mid- to late-growing season to: (1) quantify the BRFs of four rangeland vegetation functional groups (native shrub, native grasses, invasive annual grasses, and forbs), and (2) examine ways in which bidirectional reflectance values may help delineate native and invasive vegetation types. We found that the invasive grass medusahead rye (Taeniatherum caput-medusae [L.] Nevski) could be discriminated from other vegetation types at nadir and across four forward-viewing zenith angles because this species exhibited structural changes when leaf orientation changed from erectophile to planophile during and after the filling of seedheads. We also confirmed that native shrubs exhibited the highest anisotropy in all wavebands, as the relatively complex structure of the shrub canopy and concomitant shadowing greatly affected values of normalized difference vegetation index across all view angles. In order to delineate rangeland vegetation types at coarser scales, further study is needed to quantify the spectral angular signatures of these plant groups using satellite-based images.

  4. Flotation Bubble Delineation Based on Harris Corner Detection and Local Gray Value Minima

    Directory of Open Access Journals (Sweden)

    Weixing Wang

    2015-03-01

    Full Text Available Froth image segmentation is an important and basic part in an online froth monitoring system in mineral processing. The fast and accurate bubble delineation in a froth image is significant for the subsequent froth surface characterization. This paper proposes a froth image segmentation method combining image classification and image segmentation. In the method, an improved Harris corner detection algorithm is applied to classify froth images first. Then, for each class, the images are segmented by automatically choosing the corresponding parameters for identifying bubble edge points through extracting the local gray value minima. Finally, on the basis of the edge points, the bubbles are delineated by using a number of post-processing functions. Compared with the widely used Watershed algorithm and others for a number of lead zinc froth images in a flotation plant, the new method (algorithm can alleviate the over-segmentation problem effectively. The experimental results show that the new method can produce good bubble delineation results automatically. In addition, its processing speed can also meet the online measurement requirements.

  5. Delineating incised stream sediment sources within a San Francisco Bay tributary basin

    Science.gov (United States)

    Bigelow, Paul; Benda, Lee; Pearce, Sarah

    2016-07-01

    Erosion and sedimentation pose ubiquitous problems for land and watershed managers, requiring delineation of sediment sources and sinks across landscapes. However, the technical complexity of many spatially explicit erosion models precludes their use by practitioners. To address this critical gap, we demonstrate a contemporary use of applied geomorphometry through a straightforward GIS analysis of sediment sources in the San Francisco Bay Area in California, USA, designed to support erosion reduction strategies. Using 2 m lidar digital elevation models, we delineated the entire river network in the Arroyo Mocho watershed (573 km2) at the scale of ˜ 30 m segments and identified incised landforms using a combination of hillslope gradient and planform curvature. Chronic erosion to the channel network was estimated based on these topographic attributes and the size of vegetation, and calibrated to sediment gage data, providing a spatially explicit estimate of sediment yield from incised channels across the basin. Rates of erosion were summarized downstream through the channel network, revealing patterns of sediment supply at the reach scale. Erosion and sediment supply were also aggregated to subbasins, allowing comparative analyses at the scale of tributaries. The erosion patterns delineated using this approach provide land use planners with a robust framework to design erosion reduction strategies. More broadly, the study demonstrates a modern analysis of important geomorphic processes affected by land use that is easily applied by agencies to solve common problems in watersheds, improving the integration between science and environmental management.

  6. Delineating species with DNA barcodes: a case of taxon dependent method performance in moths.

    Directory of Open Access Journals (Sweden)

    Mari Kekkonen

    Full Text Available The accelerating loss of biodiversity has created a need for more effective ways to discover species. Novel algorithmic approaches for analyzing sequence data combined with rapidly expanding DNA barcode libraries provide a potential solution. While several analytical methods are available for the delineation of operational taxonomic units (OTUs, few studies have compared their performance. This study compares the performance of one morphology-based and four DNA-based (BIN, parsimony networks, ABGD, GMYC methods on two groups of gelechioid moths. It examines 92 species of Finnish Gelechiinae and 103 species of Australian Elachistinae which were delineated by traditional taxonomy. The results reveal a striking difference in performance between the two taxa with all four DNA-based methods. OTU counts in the Elachistinae showed a wider range and a relatively low (ca. 65% OTU match with reference species while OTU counts were more congruent and performance was higher (ca. 90% in the Gelechiinae. Performance rose when only monophyletic species were compared, but the taxon-dependence remained. None of the DNA-based methods produced a correct match with non-monophyletic species, but singletons were handled well. A simulated test of morphospecies-grouping performed very poorly in revealing taxon diversity in these small, dull-colored moths. Despite the strong performance of analyses based on DNA barcodes, species delineated using single-locus mtDNA data are best viewed as OTUs that require validation by subsequent integrative taxonomic work.

  7. Radio-anatomy Atlas for delineation SIRIADE web site: features and 1 year results; Site de radio-anatomie et d'aide a la delineation (SIRIADE): presentation et bilan a un an

    Energy Technology Data Exchange (ETDEWEB)

    Denisa, F. [Centre Jean-Bernard, Clinique Victor-Hugo, 72 - Le Mans (France); Pointreau, Y. [Clinique d' oncologie radiotherapie, Centre Henry-S.-Kaplan, CHU Bretonneau, 37 - Tours (France)

    2010-07-01

    3-D conformal radiotherapy is based on accurate target volumes delineation. Radio-anatomy knowledge's are useful but sometimes difficult to obtain. Moreover, the sources of recommendations for volume definition are disparate. We thus developed a free radio-anatomy web site dedicated to volumes delineation for radiation-oncologists (www.siriade.org). This web site is a search engine allowing to access to delineation characteristics of main tumours illustrated with clinical cases. It does not aim to provide guidelines. Its main purpose is to provide an iconographic training support with frequent up-datings. We present the features of this web site and one year connexion statistics. (authors)

  8. Consumer protection

    OpenAIRE

    Štěrbová, Alena

    2010-01-01

    77 Resumé This thesis is dedicated to the consumer protection. My reason for the choice of this topic was following. A field of consumer protection is being continually developed. It is complicated for a layman to be well informed about all his rights and duties not only because the Czech legal regulation suffers from a immense fragmentation. Moreover, the implementation of EC directives ( as a source of many provisions protecting a consumer in the Civil Code) into our legal system was carrie...

  9. Delineation of level III aquatic ecological function regionalization in the Taihu Lake basin%太湖流域水生态功能三级分区

    Institute of Scientific and Technical Information of China (English)

    高永年; 高俊峰; 陈垌烽; 许妍; 赵家虎

    2012-01-01

    Aquatic ecoregions have been used as spatial units for aquatic ecosystem management at the watershed scale. According to the protection requirements and characteristics of aquatic ecosystems in the Taihu Lake basin, the main purpose and the principles of level III aquatic ecological function regionalization delineation in this basin were proposed. Then the indicators for delineating level III aquatic ecological function regionalization were established based on regionalization objective and principles. The indicators for delineating level Ili aquatic ecological function regionalization in the non-Taihu Lake area included benthic Shannon-Wiener diversity index, chlorophyll content, water habitat types and benthic indicator species types (including Ephemera, Bivalvia, snail, Chironomidae and Oligochaeta), and the regionalization indicators for delineating level III aquatic ecological function regionalization in the Taihu Lake area included benthic Shannon-Wiener diversity index, chlorophyll content, water flow velocity and benthic indicator species (including Oligochaeta, Chironomidae class, Bivalvia, snail and others) ratio. With the aid of GIS technology, the spatial distribution of the indicators for level III aquatic ecological function regionalization delineation was identified based on the raster data from 1106 aquatic ecoregion function units in the non-Taihu Lake area and 3568 aquatic ecoregion function units in the Taihu Lake area, respectively. Two-step spatial clustering analysis approach and manual-assisted method were used to delineate level III aquatic ecological function zones. Then the Taihu Lake basin was divided into 21 level III aquatic ecological function zones. Moreover, the characteristics of the 21 zones were summarized, showing that there were significant differences in the aspects such as topography, soil type, water quality and aquatic ecology. The results of quantitative comparison of aquatic life also indicated that the benthic dominant

  10. Evaluation of Catrosat 1PAN Stereo and Resourcesat Liss 4 MSS Merged Data for Morphometric Analysis, Delineation of Drainage Basins and Codification in Tamil Nadu, India and Australia

    Science.gov (United States)

    Mohamed, G. S.; Srinivasan, S.; Pandian, R.; Gummidipoondi, R. J.; Venkatchalam, R. V.; Swaminathan. S, S.

    2012-07-01

    interpretation in conjunction with village cadastral maps has been studied. This research will be useful to consider creation of digital micro watershed atlas for management and protecting area affected by floods as well as for water and land resource management of the River basins in Queensland, New South Wales, South Australia and Victoria states of Australia. The research explains the need of using stream orders, delineation and codification micro watersheds based the principles of Dr.A.N.Khosla. This methodology was used in creation of web site of Districts soil water sheds atlas of Tamil Nadu state. With this principal of codification and delineation of watersheds based on stream order using stereo data of Cartosat 1 PAN 2.5 m data merged with Resourcesat LISS 4 data of 5.5m resolution and updating latest changes as on 2011 with non stereo Geo eye data of 0.5m resolution it is possible to create Australian micro water sheds GIS with deatils of streams with various stream orders, drainage pattern, slope, micro water sheds boundary in 1:5000 scale to manage the flood prone drainage basin in Australia. The High resolution data of satellites data apart from creation Micro watersheds GIS can be used for creation of Urban and Argicultural land parcel owenership details in Micro watershed GIS.

  11. EVALUATION OF CATROSAT 1PAN STEREO AND RESOURCESAT LISS 4 MSS MERGED DATA FOR MORPHOMETRIC ANALYSIS, DELINEATION OF DRAINAGE BASINS AND CODIFICATION IN TAMIL NADU, INDIA AND AUSTRALIA

    Directory of Open Access Journals (Sweden)

    G. S. Mohamed

    2012-07-01

    as well as visual interpretation in conjunction with village cadastral maps has been studied. This research will be useful to consider creation of digital micro watershed atlas for management and protecting area affected by floods as well as for water and land resource management of the River basins in Queensland, New South Wales, South Australia and Victoria states of Australia. The research explains the need of using stream orders, delineation and codification micro watersheds based the principles of Dr.A.N.Khosla. This methodology was used in creation of web site of Districts soil water sheds atlas of Tamil Nadu state. With this principal of codification and delineation of watersheds based on stream order using stereo data of Cartosat 1 PAN 2.5 m data merged with Resourcesat LISS 4 data of 5.5m resolution and updating latest changes as on 2011 with non stereo Geo eye data of 0.5m resolution it is possible to create Australian micro water sheds GIS with deatils of streams with various stream orders, drainage pattern, slope, micro water sheds boundary in 1:5000 scale to manage the flood prone drainage basin in Australia. The High resolution data of satellites data apart from creation Micro watersheds GIS can be used for creation of Urban and Argicultural land parcel owenership details in Micro watershed GIS.

  12. Applying geographic information systems to delineate residential suburbs and summarise data based on individual parcel attributes

    Directory of Open Access Journals (Sweden)

    Stefan A. Sinske

    2013-02-01

    Full Text Available Background: Information aggregation to suburb level is of interest to engineers and urban planners. Readily available suburb boundaries do not always correspond to the suburb names recorded for individual properties in different data bases and unwanted errors are inherent. This mismatch of suburb names at different spatial scales poses a particular problem to analysts. As part of a parallel research project into the development of a robust guideline for suburb-based water demand analyses it was necessary to evaluate a large number of suburbs in terms of various attributes, one of which was the total suburb area.Objectives: Suburb boundaries were needed to assess the total suburb area. The objective of this research was to develop a novel geographic information system (GIS application to delineate suburbs with boundaries corresponding to information contained in another data base comprising individual property records. The suburb boundaries derived in this manner may not relate to municipal boundaries, or sociopolitical boundaries, nor do they have to. The fundamentally correct suburb boundary would be the one encompassing what is perceived to be the suburb based on the suburb name in a particular data base that also contains other interesting attributes, such as water use, of individual properties.Method: The ArcGIS environment was used to delineate suburbs by means of triangulated irregular network (TIN modelling. Boundaries for suburbs with predominantly residential land use were created that included all residential properties according to the suburb name field as recorded in the treasury system. Other vacant areas were also included so as to obtain the total suburb area. The methodology was developed to assist research in the field of potable water services, but the method presented could be applied to other services that require management of information at suburb level.Results: This article illustrates how a tedious task of suburb

  13. Protective Eyewear

    Science.gov (United States)

    ... visual disorders, mechanisms of visual function, preservation of sight, and the special health problems and requirements of ... They protect your eyes from the sun’s ultraviolet (UV) rays, which can damage your eyes. Pick sunglasses ...

  14. Protected Areas

    Data.gov (United States)

    Kansas Data Access and Support Center — This dataset shows the boundaries of properties in Kansas in public or institutional ownership that contain ecological resources that merit some level of protection....

  15. Memory protection

    Science.gov (United States)

    Denning, Peter J.

    1988-01-01

    Accidental overwriting of files or of memory regions belonging to other programs, browsing of personal files by superusers, Trojan horses, and viruses are examples of breakdowns in workstations and personal computers that would be significantly reduced by memory protection. Memory protection is the capability of an operating system and supporting hardware to delimit segments of memory, to control whether segments can be read from or written into, and to confine accesses of a program to its segments alone. The absence of memory protection in many operating systems today is the result of a bias toward a narrow definition of performance as maximum instruction-execution rate. A broader definition, including the time to get the job done, makes clear that cost of recovery from memory interference errors reduces expected performance. The mechanisms of memory protection are well understood, powerful, efficient, and elegant. They add to performance in the broad sense without reducing instruction execution rate.

  16. Uncertainties in target volume delineation in radiotherapy – are they relevant and what can we do about them?

    Directory of Open Access Journals (Sweden)

    Segedin Barbara

    2016-09-01

    Full Text Available Modern radiotherapy techniques enable delivery of high doses to the target volume without escalating dose to organs at risk, offering the possibility of better local control while preserving good quality of life. Uncertainties in target volume delineation have been demonstrated for most tumour sites, and various studies indicate that inconsistencies in target volume delineation may be larger than errors in all other steps of the treatment planning and delivery process. The aim of this paper is to summarize the degree of delineation uncertainties for different tumour sites reported in the literature and review the effect of strategies to minimize them.

  17. Combined reflectance confocal microscopy-optical coherence tomography for delineation of basal cell carcinoma margins: an ex vivo study

    Science.gov (United States)

    Iftimia, Nicusor; Peterson, Gary; Chang, Ernest W.; Maguluri, Gopi; Fox, William; Rajadhyaksha, Milind

    2016-01-01

    We present a combined reflectance confocal microscopy (RCM) and optical coherence tomography (OCT) approach, integrated within a single optical layout, for diagnosis of basal cell carcinomas (BCCs) and delineation of margins. While RCM imaging detects BCC presence (diagnoses) and its lateral spreading (margins) with measured resolution of ˜1 μm, OCT imaging delineates BCC depth spreading (margins) with resolution of ˜7 μm. When delineating margins in 20 specimens of superficial and nodular BCCs, depth could be reliably determined down to ˜600 μm, and agreement with histology was within about ±50 μm.

  18. Radiation Protection

    Energy Technology Data Exchange (ETDEWEB)

    Loos, M

    2001-04-01

    Major achievements of SCK-CEN's Radiation Protection Department in 2000 are described. The main areas for R and D of the department remain neutron dosimetry and neutron activation analysis, safeguards information handling and non-destructive assay techniques. Further activities include low-level radioactivity measurements in environmental and biological samples and radiation protection research. Finally, achievements in decision strategy research and social sciences in nuclear research are reported.

  19. Corrosion protection

    Science.gov (United States)

    Brown, Donald W.; Wagh, Arun S.

    2003-05-27

    There has been invented a chemically bonded phosphate corrosion protection material and process for application of the corrosion protection material for corrosion prevention. A slurry of iron oxide and phosphoric acid is used to contact a warm surface of iron, steel or other metal to be treated. In the presence of ferrous ions from the iron, steel or other metal, the slurry reacts to form iron phosphates which form grains chemically bonded onto the surface of the steel.

  20. DOE Fire Protection Handbook, Volume I

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The Department of Energy (DOE) Fire Protection Program is delineated in a number of source documents including; the Code of Federal Regulations (CFR), DOE Policy Statements and Orders, DOE and national consensus standards (such as those promulgated by the National Fire Protection Association), and supplementary guidance, This Handbook is intended to bring together in one location as much of this material as possible to facilitate understanding and ease of use. The applicability of any of these directives to individual Maintenance and Operating Contractors or to given facilities and operations is governed by existing contracts. Questions regarding applicability should be directed to the DOE Authority Having Jurisdiction for fire safety. The information provided within includes copies of those DOE directives that are directly applicable to the implementation of a comprehensive fire protection program. They are delineated in the Table of Contents. The items marked with an asterisk (*) are included on the disks in WordPerfect 5.1 format, with the filename noted below. The items marked with double asterisks are provided as hard copies as well as on the disk. For those using MAC disks, the files are in Wordperfect 2.1 for MAC.

  1. Protected Areas - Protected Federal Lands

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — The Federal Lands data consists of land areas that are run and maintained by U.S. Governmental authorities and are considered protected.The Department of Natural...

  2. Delineation of Nested Wetland Catchments and Modeling of Hydrologic Connectivity Using LiDAR Data and Aerial Imagery

    Science.gov (United States)

    In traditional watershed delineation and topographic modelling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM) to enforce flow continuity of water across the topographic surface to the watershed outlets. In r...

  3. Inter-observer variation in delineation of the heart and left anterior descending coronary artery in radiotherapy for breast cancer

    DEFF Research Database (Denmark)

    Lorenzen, Ebbe L.; Taylor, Carolyn W.; Maraldo, Maja

    2013-01-01

    of the heart. Common guidelines reduced the spatial variation for the heart and the length of the LAD, but increased the variation in the anterior-posterior/right-left plane. The coefficients of variation (CV) in the estimated doses to the heart were: mean dose 7.5% without and 3.6% with guidelines, maximum......BACKGROUND AND PURPOSE: To determine the extent of inter-observer variation in delineation of the heart and left anterior descending coronary artery (LADCA) and its impact on estimated doses. METHODS AND MATERIALS: Nine observers from five centres delineated the heart and LADCA on fifteen patients...... receiving left breast radiotherapy. The delineations were carried out twice, first without guidelines and then with a set of common guidelines. RESULTS: For the heart, most spatial variation in delineation was near the base of the heart whereas for the LADCA most variation was in its length at the apex...

  4. Delineation of Nested Wetland Catchments and Modeling of Hydrologic Connectivity Using LiDAR Data and Aerial Imagery

    Science.gov (United States)

    In traditional watershed delineation and topographic modelling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM) to enforce flow continuity of water across the topographic surface to the watershed outlets. In r...

  5. A novel algorithm for delineating wetland depressions and mapping surface hydrologic flow pathways using LiDAR data

    Science.gov (United States)

    In traditional watershed delineation and topographic modeling, surface depressions are generally treated as spurious features and simply removed from a digital elevation model (DEM) to enforce flow continuity of water across the topographic surface to the watershed outlets. In re...

  6. Quality assessment of delineation and dose planning of early breast cancer patients included in the randomized Skagen Trial 1

    DEFF Research Database (Denmark)

    Francolini, Giulio; Thomsen, Mette S; Yates, Esben S

    2017-01-01

    Background and purpose: To report on a Quality assessment (QA) of Skagen Trial 1, exploring hypofractionation for breast cancer patients with indication for regional nodal radiotherapy. Material and methods: Deviations from protocol regarding target volume delineations and dose parameters (Dmin, ...... coverage in most patients. Inter-observer variability in contouring was low. Dose parameters were in harmony with protocol regardless original or GS segmentation.......Background and purpose: To report on a Quality assessment (QA) of Skagen Trial 1, exploring hypofractionation for breast cancer patients with indication for regional nodal radiotherapy. Material and methods: Deviations from protocol regarding target volume delineations and dose parameters (Dmin......, Dmax, D98%, D95% and D2%) from randomly selected dose plans were assessed. Target volume delineation according to ESTRO guidelines was obtained through atlas based automated segmentation and centrally approved as gold standard (GS). Dice similarity scores (DSC) with original delineations were measured...

  7. Characteristics and landcover of estuarine boundaries: implications for the delineation of the South African estuarine functional zone

    CSIR Research Space (South Africa)

    Veldkornet, DA

    2015-11-01

    Full Text Available , electrical conductivity), groundwater characteristics (salinity, conductivity and depth) and plant species. The delineation of the EFZ needs to be consistent, inclusive of all estuarine physical and biological processes, and cost-effective to identify so...

  8. Machine Protection

    CERN Document Server

    Schmidt, R

    2014-01-01

    The protection of accelerator equipment is as old as accelerator technology and was for many years related to high-power equipment. Examples are the protection of powering equipment from overheating (magnets, power converters, high-current cables), of superconducting magnets from damage after a quench and of klystrons. The protection of equipment from beam accidents is more recent. It is related to the increasing beam power of high-power proton accelerators such as ISIS, SNS, ESS and the PSI cyclotron, to the emission of synchrotron light by electron–positron accelerators and FELs, and to the increase of energy stored in the beam (in particular for hadron colliders such as LHC). Designing a machine protection system requires an excellent understanding of accelerator physics and operation to anticipate possible failures that could lead to damage. Machine protection includes beam and equipment monitoring, a system to safely stop beam operation (e.g. dumping the beam or stopping the beam at low energy) and an ...

  9. Geomorphic Flood Area (GFA): a QGIS tool for a cost-effective delineation of the floodplains

    Science.gov (United States)

    Samela, Caterina; Albano, Raffaele; Sole, Aurelia; Manfreda, Salvatore

    2017-04-01

    The importance of delineating flood hazard and risk areas at a global scale has been highlighted for many years. However, its complete achievement regularly encounters practical difficulties, above all the lack of data and implementation costs. In conditions of scarce data availability (e.g. ungauged basins, large-scale analyses), a fast and cost-effective floodplain delineation can be carried out using geomorphic methods (e.g., Manfreda et al., 2011; 2014). In particular, an automatic DEM-based procedure has been implemented in an open-source QGIS plugin named Geomorphic Flood Area - tool (GFA - tool). This tool performs a linear binary classification based on the recently proposed Geomorphic Flood Index (GFI), which exhibited high classification accuracy and reliability in several test sites located in Europe, United States and Africa (Manfreda et al., 2015; Samela et al., 2016, 2017; Samela, 2016). The GFA - tool is designed to make available to all users the proposed procedure, that includes a number of operations requiring good geomorphic and GIS competences. It allows computing the GFI through terrain analysis, turning it into a binary classifier, and training it on the base of a standard inundation map derived for a portion of the river basin (a minimum of 2% of the river basin's area is suggested) using detailed methods of analysis (e.g. flood hazard maps produced by emergency management agencies or river basin authorities). Finally, GFA - tool allows to extend the classification outside the calibration area to delineate the flood-prone areas across the entire river basin. The full analysis has been implemented in this plugin with a user-friendly interface that should make it easy to all user to apply the approach and produce the desired results. Keywords: flood susceptibility; data scarce environments; geomorphic flood index; linear binary classification; Digital elevation models (DEMs). References Manfreda, S., Di Leo, M., Sole, A., (2011). Detection of

  10. ACCURACY ASSESSMENT OF CROWN DELINEATION METHODS FOR THE INDIVIDUAL TREES USING LIDAR DATA

    Directory of Open Access Journals (Sweden)

    K. T. Chang

    2016-06-01

    Full Text Available Forest canopy density and height are used as variables in a number of environmental applications, including the estimation of biomass, forest extent and condition, and biodiversity. The airborne Light Detection and Ranging (LiDAR is very useful to estimate forest canopy parameters according to the generated canopy height models (CHMs. The purpose of this work is to introduce an algorithm to delineate crown parameters, e.g. tree height and crown radii based on the generated rasterized CHMs. And accuracy assessment for the extraction of volumetric parameters of a single tree is also performed via manual measurement using corresponding aerial photo pairs. A LiDAR dataset of a golf course acquired by Leica ALS70-HP is used in this study. Two algorithms, i.e. a traditional one with the subtraction of a digital elevation model (DEM from a digital surface model (DSM, and a pit-free approach are conducted to generate the CHMs firstly. Then two algorithms, a multilevel morphological active-contour (MMAC and a variable window filter (VWF, are implemented and used in this study for individual tree delineation. Finally, experimental results of two automatic estimation methods for individual trees can be evaluated with manually measured stand-level parameters, i.e. tree height and crown diameter. The resulting CHM generated by a simple subtraction is full of empty pixels (called "pits" that will give vital impact on subsequent analysis for individual tree delineation. The experimental results indicated that if more individual trees can be extracted, tree crown shape will became more completely in the CHM data after the pit-free process.

  11. Accuracy Assessment of Crown Delineation Methods for the Individual Trees Using LIDAR Data

    Science.gov (United States)

    Chang, K. T.; Lin, C.; Lin, Y. C.; Liu, J. K.

    2016-06-01

    Forest canopy density and height are used as variables in a number of environmental applications, including the estimation of biomass, forest extent and condition, and biodiversity. The airborne Light Detection and Ranging (LiDAR) is very useful to estimate forest canopy parameters according to the generated canopy height models (CHMs). The purpose of this work is to introduce an algorithm to delineate crown parameters, e.g. tree height and crown radii based on the generated rasterized CHMs. And accuracy assessment for the extraction of volumetric parameters of a single tree is also performed via manual measurement using corresponding aerial photo pairs. A LiDAR dataset of a golf course acquired by Leica ALS70-HP is used in this study. Two algorithms, i.e. a traditional one with the subtraction of a digital elevation model (DEM) from a digital surface model (DSM), and a pit-free approach are conducted to generate the CHMs firstly. Then two algorithms, a multilevel morphological active-contour (MMAC) and a variable window filter (VWF), are implemented and used in this study for individual tree delineation. Finally, experimental results of two automatic estimation methods for individual trees can be evaluated with manually measured stand-level parameters, i.e. tree height and crown diameter. The resulting CHM generated by a simple subtraction is full of empty pixels (called "pits") that will give vital impact on subsequent analysis for individual tree delineation. The experimental results indicated that if more individual trees can be extracted, tree crown shape will became more completely in the CHM data after the pit-free process.

  12. PET-guided delineation of radiation therapy treatment volumes: a survey of image segmentation techniques

    Energy Technology Data Exchange (ETDEWEB)

    Zaidi, Habib [Geneva University Hospital, Division of Nuclear Medicine, Geneva 4 (Switzerland); Geneva University, Geneva Neuroscience Center, Geneva (Switzerland); El Naqa, Issam [Washington University School of Medicine, Department of Radiation Oncology, St. Louis, MO (United States)

    2010-11-15

    Historically, anatomical CT and MR images were used to delineate the gross tumour volumes (GTVs) for radiotherapy treatment planning. The capabilities offered by modern radiation therapy units and the widespread availability of combined PET/CT scanners stimulated the development of biological PET imaging-guided radiation therapy treatment planning with the aim to produce highly conformal radiation dose distribution to the tumour. One of the most difficult issues facing PET-based treatment planning is the accurate delineation of target regions from typical blurred and noisy functional images. The major problems encountered are image segmentation and imperfect system response function. Image segmentation is defined as the process of classifying the voxels of an image into a set of distinct classes. The difficulty in PET image segmentation is compounded by the low spatial resolution and high noise characteristics of PET images. Despite the difficulties and known limitations, several image segmentation approaches have been proposed and used in the clinical setting including thresholding, edge detection, region growing, clustering, stochastic models, deformable models, classifiers and several other approaches. A detailed description of the various approaches proposed in the literature is reviewed. Moreover, we also briefly discuss some important considerations and limitations of the widely used techniques to guide practitioners in the field of radiation oncology. The strategies followed for validation and comparative assessment of various PET segmentation approaches are described. Future opportunities and the current challenges facing the adoption of PET-guided delineation of target volumes and its role in basic and clinical research are also addressed. (orig.)

  13. LNAPL source zone delineation using soil gases in a heterogeneous silty-sand aquifer

    Science.gov (United States)

    Cohen, Grégory J. V.; Jousse, Florie; Luze, Nicolas; Höhener, Patrick; Atteia, Olivier

    2016-09-01

    Source delineation of hydrocarbon contaminated sites is of high importance for remediation work. However, traditional methods like soil core extraction and analysis or recent Membrane Interface Probe methods are time consuming and costly. Therefore, the development of an in situ method based on soil gas analysis can be interesting. This includes the direct measurement of volatile organic compounds (VOCs) in soil gas taken from gas probes using a PID (Photo Ionization Detector) and the analysis of other soil gases related to VOC degradation distribution (CH4, O2, CO2) or related to presence of Light Non-Aqueous Phase Liquid (LNAPL) as 222Rn. However, in widespread heterogeneous formations, delineation by gas measurements becomes more challenging. The objective of this study is twofold: (i) to analyse the potential of several in situ gas measurement techniques in comparison to soil coring for LNAPL source delineation at a heterogeneous contaminated site where the techniques might be limited by a low diffusion potential linked to the presence of fine sands and silts, and (ii) to analyse the effect of vertical sediment heterogeneities on the performance of these gas measurement methods. Thus, five types of gases were analysed: VOCs, their three related degradation products O2, CO2 and CH4 and 222Rn. Gas measurements were compared to independent LNAPL analysis by coring. This work was conducted at an old industrial site frequently contaminated by a Diesel-Fuel mixture located in a heterogeneous fine-grained aquifer. Results show that in such heterogeneous media migration of reactive gases like VOCs occurs only across small distances and the VOC concentrations sampled with gas probes are mainly related to local conditions rather than the presence of LNAPL below the gas probe. 222Rn is not well correlated with LNAPL because of sediment heterogeneity. Oxygen, CO2, and especially CH4, have larger lengths of diffusion and give the clearest picture for LNAPL presence at this

  14. An Evolutionary Approach to the Delineation of Functional Areas Based on Travel-to-work Flows

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    This paper presents a new approach to the delineation of local labor markets based on evolutionary computation. The aim of the exercise is the division of a given territory into functional regions based on travel-to-work flows. Such regions are defined so that a high degree of inter-regional separation and of intra-regional integration in both cases in terms of commuting flows is guaranteed.Additional requirements include the absence of overlap between delineated regions and the exhaustive coverage of the whole territory.The procedure is based on the maximization of a fitness function that measures aggregate intra-region interaction under constraints of inter-region separation and minimum size. In the experimentation stage, two variations of the fitness function are used, and the process is also applied as a final stage for the optimization of the results from one of the most successful existing methods, which are used by the British authorities for the delineation of travel-to-work areas (TTWAs). The empirical exercise is conducted using real data for a sufficiently large territory that is considered to be representative given the density and variety of travel-to-work patterns that it embraces. The paper includes the quantitative comparison with alternative traditional methods, the assessment of the performance of the set of operators which has been specifically designed to handle the regionalization problem and the evaluation of the convergence process. The robustness of the solutions, something crucial in a research and policy-making context, is also discussed in the paper.

  15. Investigating the Capability of High Resolution ALSM to Provide Accurate Watershed Delineation and Stream Network Data

    Science.gov (United States)

    Sedighi, A.; Slatton, K. C.; Hatfield, K.

    2007-05-01

    The development of geographic information systems (GIS) and digital elevation models (DEMs) has provided an opportunity to describe the pathways of water movement in a watershed. Adequate DEM resolution is of high importance in stream network detection. Local, state, and federal agencies have relied on US Geological Survey 1:24,000 scale topographic maps for information on stream networks for planning, management, and regulatory programs related to streams. DEM creation techniques that avoid map contours as the source of digital heights can improve watershed delineation and stream network data quality. Airborne Laser Swath Mapping (ALSM) technology (also referred to as LIDAR) provides DEMs of fine resolution and high accuracy. However, there are shortcomings in using both low resolution and high resolution DEMs. The focus of this work will be in the unique aspects of using ALSM data in watershed delineation and stream network mapping, in comparison to the other sources of DEM. In particular the reliability of both input data and output results of stream network using different resolutions will be evaluated. In this study, stream location resulting from high-resolution ALSM and low- resolution NED are compared to ground truth locations of the stream in Hogtown Creek Watershed, located in Gainesville, Florida. This study shows that ALSM-derived models are more successful at delineating streams and at locating them in their topographically correct position as compared to lower resolution DEMs. However, high resolution ALSM data produce artifacts that can affect the flow of water as predicted by stream network algorithms. Methods for overcoming the challenges with regard to ALSM data in stream network detection are presented.

  16. Combined fuzzy logic and random walker algorithm for PET image tumor delineation.

    Science.gov (United States)

    Soufi, Motahare; Kamali-Asl, Alireza; Geramifar, Parham; Abdoli, Mehrsima; Rahmim, Arman

    2016-02-01

    The random walk (RW) technique serves as a powerful tool for PET tumor delineation, which typically involves significant noise and/or blurring. One challenging step is hard decision-making in pixel labeling. Fuzzy logic techniques have achieved increasing application in edge detection. We aimed to combine the advantages of fuzzy edge detection with the RW technique to improve PET tumor delineation. A fuzzy inference system was designed for tumor edge detection from RW probabilities. Three clinical PET/computed tomography datasets containing 12 liver, 13 lung, and 18 abdomen tumors were analyzed, with manual expert tumor contouring as ground truth. The standard RW and proposed combined method were compared quantitatively using the dice similarity coefficient, the Hausdorff distance, and the mean standard uptake value. The dice similarity coefficient of the proposed method versus standard RW showed significant mean improvements of 21.0±7.2, 12.3±5.8, and 18.4%±6.1% for liver, lung, and abdominal tumors, respectively, whereas the mean improvements in the Hausdorff distance were 3.6±1.4, 1.3±0.4, 1.8±0.8 mm, and the mean improvements in SUVmean error were 15.5±6.3, 11.7±8.6, and 14.1±6.8% (all P's<0.001). For all tumor sizes, the proposed method outperformed the RW algorithm. Furthermore, tumor edge analysis demonstrated further enhancement of the performance of the algorithm, relative to the RW method, with decreasing edge gradients. The proposed technique improves PET lesion delineation at different tumor sites. It depicts greater effectiveness in tumors with smaller size and/or low edge gradients, wherein most PET segmentation algorithms encounter serious challenges. Favorable execution time and accurate performance of the algorithm make it a great tool for clinical applications.

  17. Delineation of the Pahute Mesa–Oasis Valley groundwater basin, Nevada

    Science.gov (United States)

    Fenelon, Joseph M.; Halford, Keith J.; Moreo, Michael T.

    2016-01-22

    This report delineates the Pahute Mesa–Oasis Valley (PMOV) groundwater basin, where recharge occurs, moves downgradient, and discharges to Oasis Valley, Nevada. About 5,900 acre-feet of water discharges annually from Oasis Valley, an area of springs and seeps near the town of Beatty in southern Nevada. Radionuclides in groundwater beneath Pahute Mesa, an area of historical underground nuclear testing at the Nevada National Security Site, are believed to be migrating toward Oasis Valley. Delineating the boundary of the PMOV groundwater basin is necessary to adequately assess the potential for transport of radionuclides from Pahute Mesa to Oasis Valley.The PMOV contributing area is defined based on regional water-level contours, geologic controls, and knowledge of adjacent flow systems. The viability of this area as the contributing area to Oasis Valley and the absence of significant interbasin flow between the PMOV groundwater basin and adjacent basins are shown regionally and locally. Regional constraints on the location of the contributing area boundary and on the absence of interbasin groundwater flow are shown by balancing groundwater discharges in the PMOV groundwater basin and adjacent basins against available water from precipitation. Internal consistency for the delineated contributing area is shown by matching measured water levels, groundwater discharges, and transmissivities with simulated results from a single-layer, steady-state, groundwater-flow model. An alternative basin boundary extending farther north than the final boundary was rejected based on a poor chloride mass balance and a large imbalance in the northern area between preferred and simulated recharge.

  18. A tri-modality image fusion method for target delineation of brain tumors in radiotherapy.

    Directory of Open Access Journals (Sweden)

    Lu Guo

    Full Text Available To develop a tri-modality image fusion method for better target delineation in image-guided radiotherapy for patients with brain tumors.A new method of tri-modality image fusion was developed, which can fuse and display all image sets in one panel and one operation. And a feasibility study in gross tumor volume (GTV delineation using data from three patients with brain tumors was conducted, which included images of simulation CT, MRI, and 18F-fluorodeoxyglucose positron emission tomography (18F-FDG PET examinations before radiotherapy. Tri-modality image fusion was implemented after image registrations of CT+PET and CT+MRI, and the transparency weight of each modality could be adjusted and set by users. Three radiation oncologists delineated GTVs for all patients using dual-modality (MRI/CT and tri-modality (MRI/CT/PET image fusion respectively. Inter-observer variation was assessed by the coefficient of variation (COV, the average distance between surface and centroid (ADSC, and the local standard deviation (SDlocal. Analysis of COV was also performed to evaluate intra-observer volume variation.The inter-observer variation analysis showed that, the mean COV was 0.14(± 0.09 and 0.07(± 0.01 for dual-modality and tri-modality respectively; the standard deviation of ADSC was significantly reduced (p<0.05 with tri-modality; SDlocal averaged over median GTV surface was reduced in patient 2 (from 0.57 cm to 0.39 cm and patient 3 (from 0.42 cm to 0.36 cm with the new method. The intra-observer volume variation was also significantly reduced (p = 0.00 with the tri-modality method as compared with using the dual-modality method.With the new tri-modality image fusion method smaller inter- and intra-observer variation in GTV definition for the brain tumors can be achieved, which improves the consistency and accuracy for target delineation in individualized radiotherapy.

  19. 46, XY, del (3) (pter-->p25) syndrome: further delineation of the clinical phenotype.

    Science.gov (United States)

    Benini, D; Vino, L; Vecchini, S; Fanos, V

    1999-12-01

    A boy with monosomy for the distal part of the short arm of chromosome 3 is described. The clinical features this patient has in common with the previously reported cases include pre- and post-natal growth delay, microcephaly, craniofacial dysmorphism and mental retardation. In addition, minor abnormalities not previously reported were observed, such as snapping thumbs, dorsiflected big toes, connecting anterior and posterior fontanelles at birth, nasolacrimal duct stenosis and double urethral meatus. Conclusion These five new clinical findings may help in further delineation of the syndrome and allow its early recognition. A complete revision of clinical findings published in literature is reported.

  20. DELINEATION OF BOUNDARY CONTOURS OF MINERAL RAW MATERIALS WITHIN THE DEPOSIT SPACE CONSIDERING THE QUALITY

    Directory of Open Access Journals (Sweden)

    Ivan Tomašić

    1990-12-01

    Full Text Available On the basis of performed explorations, in the phase of deposit preparation and development for exploitation the obtained results regarding the raw material quality were transfered to the surface. The results served both for the development and planning of deposit excavation dynamics and for the delineation of boundary contours by mineral raw materials within the deposit space considering the quality, The case presented in the article refers to the marl and limestone open pit for the cement industry, the »Partizan« near Split (the paper is published in Croatian.

  1. Replication of an empirical approach to delineate the heterogeneity of chronic unexplained fatigue

    Directory of Open Access Journals (Sweden)

    White Peter D

    2009-10-01

    Full Text Available Abstract Background Chronic fatigue syndrome (CFS is defined by self-reported symptoms. There are no diagnostic signs or laboratory markers, and the pathophysiology remains inchoate. In part, difficulties identifying and replicating biomarkers and elucidating the pathophysiology reflect the heterogeneous nature of the syndromic illness CFS. We conducted this analysis of people from defined metropolitan, urban, and rural populations to replicate our earlier empirical delineation of medically unexplained chronic fatigue and CFS into discrete endophenotypes. Both the earlier and current analyses utilized quantitative measures of functional impairment and symptoms as well as laboratory data. This study and the earlier one enrolled participants from defined populations and measured the internal milieu, which differentiates them from studies of clinic referrals that examine only clinical phenotypes. Methods This analysis evaluated 386 women identified in a population-based survey of chronic fatigue and unwellness in metropolitan, urban, and rural populations of the state of Georgia, USA. We used variables previously demonstrated to effectively delineate endophenotypes in an attempt to replicate identification of these endophenotypes. Latent class analyses were used to derive the classes, and these were compared and contrasted to those described in the previous study based in Wichita, Kansas. Results We identified five classes in the best fit analysis. Participants in Class 1 (25% were polysymptomatic, with sleep problems and depressed mood. Class 2 (24% was also polysymptomatic, with insomnia and depression, but participants were also obese with associated metabolic strain. Class 3 (20% had more selective symptoms but was equally obese with metabolic strain. Class 4 (20% and Class 5 (11% consisted of nonfatigued, less symptomatic individuals, Class 4 being older and Class 5 younger. The classes were generally validated by independent variables. People

  2. Delineation of subsurface hydrocarbon contamination at a former hydrogenation plant using spectral induced polarization imaging.

    Science.gov (United States)

    Flores Orozco, Adrián; Kemna, Andreas; Oberdörster, Christoph; Zschornack, Ludwig; Leven, Carsten; Dietrich, Peter; Weiss, Holger

    2012-08-01

    Broadband spectral induced polarization (SIP) measurements were conducted at a former hydrogenation plant in Zeitz (NE Germany) to investigate the potential of SIP imaging to delineate areas with different BTEX (benzene, toluene, ethylbenzene, and xylene) concentrations. Conductivity images reveal a poor correlation with the distribution of contaminants; whereas phase images exhibit two main anomalies: low phase shift values (1.7 g/l), and higher phase values for lower BTEX concentrations. Moreover, the spectral response of the areas with high BTEX concentration and free-phase products reveals a flattened spectrum in the low frequencies (contaminants at BTEX contaminated sites. Copyright © 2012 Elsevier B.V. All rights reserved.

  3. Automated volume of interest delineation and rendering of cone beam CT images in interventional cardiology

    Science.gov (United States)

    Lorenz, Cristian; Schäfer, Dirk; Eshuis, Peter; Carroll, John; Grass, Michael

    2012-02-01

    Interventional C-arm systems allow the efficient acquisition of 3D cone beam CT images. They can be used for intervention planning, navigation, and outcome assessment. We present a fast and completely automated volume of interest (VOI) delineation for cardiac interventions, covering the whole visceral cavity including mediastinum and lungs but leaving out rib-cage and spine. The problem is addressed in a model based approach. The procedure has been evaluated on 22 patient cases and achieves an average surface error below 2mm. The method is able to cope with varying image intensities, varying truncations due to the limited reconstruction volume, and partially with heavy metal and motion artifacts.

  4. A tri-modality image fusion method for target delineation of brain tumors in radiotherapy.

    Science.gov (United States)

    Guo, Lu; Shen, Shuming; Harris, Eleanor; Wang, Zheng; Jiang, Wei; Guo, Yu; Feng, Yuanming

    2014-01-01

    To develop a tri-modality image fusion method for better target delineation in image-guided radiotherapy for patients with brain tumors. A new method of tri-modality image fusion was developed, which can fuse and display all image sets in one panel and one operation. And a feasibility study in gross tumor volume (GTV) delineation using data from three patients with brain tumors was conducted, which included images of simulation CT, MRI, and 18F-fluorodeoxyglucose positron emission tomography (18F-FDG PET) examinations before radiotherapy. Tri-modality image fusion was implemented after image registrations of CT+PET and CT+MRI, and the transparency weight of each modality could be adjusted and set by users. Three radiation oncologists delineated GTVs for all patients using dual-modality (MRI/CT) and tri-modality (MRI/CT/PET) image fusion respectively. Inter-observer variation was assessed by the coefficient of variation (COV), the average distance between surface and centroid (ADSC), and the local standard deviation (SDlocal). Analysis of COV was also performed to evaluate intra-observer volume variation. The inter-observer variation analysis showed that, the mean COV was 0.14(± 0.09) and 0.07(± 0.01) for dual-modality and tri-modality respectively; the standard deviation of ADSC was significantly reduced (ptri-modality; SDlocal averaged over median GTV surface was reduced in patient 2 (from 0.57 cm to 0.39 cm) and patient 3 (from 0.42 cm to 0.36 cm) with the new method. The intra-observer volume variation was also significantly reduced (p = 0.00) with the tri-modality method as compared with using the dual-modality method. With the new tri-modality image fusion method smaller inter- and intra-observer variation in GTV definition for the brain tumors can be achieved, which improves the consistency and accuracy for target delineation in individualized radiotherapy.

  5. Simple diagrammatic method to delineate male urethra in prostate cancer radiotherapy: an MRI based approach.

    Science.gov (United States)

    Kataria, Tejinder; Gupta, Deepak; Goyal, Shikha; Bisht, Shyam S; Chaudhary, Ravi; Narang, Kushal; Banerjee, Susovan; Basu, Trinanjan; Abhishek, Ashu; Sambasivam, Sasikumar; Vishnu, Nisha T

    2016-12-01

    Stereotactic body radiotherapy (SBRT) is being increasingly utilized in the treatment of prostate cancer. With the advent of high-precision radiosurgery systems, it is possible to obtain dose distributions akin to high-dose rate brachytherapy with SBRT. However, urethral toxicity has a significant impact on the quality of life in patients with prostate cancer. Contouring the male urethra on a CT scan is difficult in the absence of an indwelling catheter. In this pictorial essay, we have used the MRI obtained for radiotherapy planning to aid in the delineation of the male urethra and have attempted to define guidelines for the same.

  6. Moving window analysis and riparian boundary delineation on the Northern Plains of Kruger National Park, South Africa

    Science.gov (United States)

    Kröger, Robert; Khomo, Lesego M.; Levick, Shaun; Rogers, Kevin H.

    2009-09-01

    Landscapes commonly comprise of mosaics, patches and boundaries. Riparian boundaries are complex to delineate and characterize, with a multitude of variables available for delineation. Multiple methods exist for boundary delineation such as two-dimensional wombling, constrained classification techniques and discontinuity detection. One method that has proven to be reliable in boundary delineation with one-dimensional transect data is the moving split window (MSW) analysis. This study demonstrates the efficacy of MSW to delineate grass species turnover and environmental boundaries across two geologically dissimilar riparian zones in the Kruger National Park, South Africa. There are few studies that have delineated riparian boundaries of Kruger National Park, and none that have used the MSW analysis. MSW detects significant changes in dissimilarity indices of variables along gradients. Significant shifts in dissimilarity designate boundaries at various spatial scales dictated by window sizes. Significant boundaries emerge by altering window sizes, increasing quadrat width and removing infrequent herbaceous species. By utilizing these three methods, MSW background variance was reduced and riparian and wetland/upland boundaries were sharper and more easily defined.

  7. Protection Myopia

    DEFF Research Database (Denmark)

    Laursen, Keld; Salter, Ammon; Li, Cher

    The strategies firms use to protect their intellectual property and knowledge can strongly influence their ability to capture the benefits of their innovative efforts. Using the attention-based theory, we explore positive and negative sides of legal appropriability. While asserting the benefits f...

  8. Radiation protection

    CERN Document Server

    CERN. Geneva

    2001-01-01

    This will be a simple explanation of the reasons why CERN has to be careful about radiation protections issues, a practical guide on how to recognize radiation dangers, the monitoring systems that make sure radiation levels are well tolerable norms, and a quick summary of what radiation levels mean in terms of personal risk.

  9. CTAG-containing cleavage site profiling to delineate Salmonella into natural clusters.

    Directory of Open Access Journals (Sweden)

    Le Tang

    Full Text Available The bacterial genus Salmonella contains thousands of serotypes that infect humans or other hosts, causing mild gastroenteritis to potentially fatal systemic infections in humans. Pathogenically distinct Salmonella serotypes have been classified as individual species or as serological variants of merely one or two species, causing considerable confusion in both research and clinical settings. This situation reflects a long unanswered question regarding whether the Salmonella serotypes exist as discrete genetic clusters (natural species of organisms or as phenotypic (e.g. pathogenic variants of a single (or two natural species with a continuous spectrum of genetic divergence among them. Our recent work, based on genomic sequence divergence analysis, has demonstrated that genetic boundaries exist among Salmonella serotypes, circumscribing them into clear-cut genetic clusters of bacteria.To further test the genetic boundary concept for delineating Salmonella into clearly defined natural lineages (e.g., species, we sampled a small subset of conserved genomic DNA sequences, i.e., the endonuclease cleavage sites that contain the highly conserved CTAG sequence such as TCTAGA for XbaI. We found that the CTAG-containing cleavage sequence profiles could be used to resolve the genetic boundaries as reliably and efficiently as whole genome sequence comparisons but with enormously reduced requirements for time and resources.Profiling of CTAG sequence subsets reflects genetic boundaries among Salmonella lineages and can delineate these bacteria into discrete natural clusters.

  10. Delineation of Waters of the United States for Lawrence Livermore National Laboratory, Site 300

    Energy Technology Data Exchange (ETDEWEB)

    Preston, R E

    2006-09-25

    This report presents the results of a delineation of waters of the United States, including wetlands, for Lawrence Livermore National Laboratory's Site 300 in Alameda and San Joaquin Counties, California. Jones & Stokes mapped vegetation at Site 300 in August, 2001, using Global Positioning System (GPS) data recorders to collect point locations and to record linear features and map unit polygons. We identified wetlands boundaries in the field on the basis of the plant community present. We returned to collect additional information on wetland soils on July 3, 2002. Forty-six wetlands were identified, with a total area of 3.482 hectares (8.605 acres). The wetlands include vernal pools, freshwater seeps, and seasonal ponds. Wetlands appearing to meet the criteria for federal jurisdictional total 1.776 hectares (4.388 acres). A delineation map is presented and a table is provided with information on the type, size, characteristic plant species of each wetland, and a preliminary jurisdictional assessment.

  11. Delineation of flood-prone areas and the identification of residential hotspots for two African cities

    Science.gov (United States)

    De Risi, Raffaele; Jalayer, Fatemeh; De Paola, Francesco; Iervolino, Iunio; Giugni, Maurizio; Topa, Maria Elena; Yonas, Nebyou; Nebebe, Alemu; Woldegerima, Tekle; Yeshitela, Kumelachew; Kibassa, Deusdedit; Shemdoe, Riziki; Cavan, Gina; Lindley, Sarah; Renner, Florian; Printz, Andreas

    2013-04-01

    This work employs two GIS-based frameworks for identifying the urban residential hot spots. This is done by overlaying a map of potentially flood prone areas (the topographic wetness index, TWI) and a map of urban morphology types (UMT) classified as residential. The topographic wetness index (TWI, Qin et al. 2011) allows for the delineation of a portion of a hydrographic basin potentially exposed to flood inundation by identifying all the areas characterized by a topographic index that exceeds a given threshold. The urban morphological types (Pauleit and Duhme 2000, Gill et al. 2008, Cavan et al. 2012) form the foundation of a classification scheme which brings together facets of urban form and function. The application of the UMTs allows the delineation of geographical units. The distinction of UMTs at a 'meso'-scale (i.e. between the city level and that of the individual units) makes a suitable basis for the spatial analysis of cities. The TWI threshold value depends on the resolution of the digital elevation model (DEM), topology of the hydrographic basin (i.e. urban, peri-urban or rural) and the constructed infrastructure (Manfreda et al. 2011). This threshold value is usually calibrated based on the results of detailed delineation of the inundation profile for selected zones. In this study, the TWI threshold is calibrated based on the calculated inundation profiles for various return periods for selected zones within the basin through a Bayesian framework. The Bayesian framework enables the probabilistic characterization of the threshold value by calculating the complementary probability of false delineation of flood prone zones as a function of various threshold values. For a given return period, the probability of false delineation is calculated as the sum of the probability of indicating a zone flood prone which is not indicated as such by the inundation profile and the probability that a zone is indicated as not flood prone but indicated as flood prone by

  12. Delineation of Potential Mineral Resources Region Based on Geo-anomaly Unit

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The geological anomaly unit method (GAUM) is a new way to delineate and evaluate ore-finding targets in line with the “geological anomaly ore-finding theory”. Comprehensive ore-finding information from geological, geochemical and geophysical data is used for quantitative measurement of the “ore-forming geological anomaly unit” in this paper. The main procedures are shown as follows: (1) The geo-anomalous events associated with gold mineralization are analyzed in Tongshi gold field; (2) The zonation in the concentrated heavy minerals and the stream-sediment elements of ore-forming geo-anomaly are studied in detail; (3) The deep geological structural framework is deduced by means of the synthetic geological interpretation of gravity and magnetic information;(4) The ore-controlling geo-anomalies and ore anomalies are chosen as the variables of the favorable ore-forming indexes that can be used for the quantitative delineation and evaluation of the potential ore-forming regions.

  13. Ground truth delineation for medical image segmentation based on Local Consistency and Distribution Map analysis.

    Science.gov (United States)

    Cheng, Irene; Sun, Xinyao; Alsufyani, Noura; Xiong, Zhihui; Major, Paul; Basu, Anup

    2015-01-01

    Computer-aided detection (CAD) systems are being increasingly deployed for medical applications in recent years with the goal to speed up tedious tasks and improve precision. Among others, segmentation is an important component in CAD systems as a preprocessing step to help recognize patterns in medical images. In order to assess the accuracy of a CAD segmentation algorithm, comparison with ground truth data is necessary. To-date, ground truth delineation relies mainly on contours that are either manually defined by clinical experts or automatically generated by software. In this paper, we propose a systematic ground truth delineation method based on a Local Consistency Set Analysis approach, which can be used to establish an accurate ground truth representation, or if ground truth is available, to assess the accuracy of a CAD generated segmentation algorithm. We validate our computational model using medical data. Experimental results demonstrate the robustness of our approach. In contrast to current methods, our model also provides consistency information at distributed boundary pixel level, and thus is invariant to global compensation error.

  14. Improving thermal ablation delineation with electrode vibration elastography using a bidirectional wave propagation assumption.

    Science.gov (United States)

    DeWall, Ryan J; Varghese, Tomy

    2012-01-01

    Thermal ablation procedures are commonly used to treat hepatic cancers and accurate ablation representation on shear wave velocity images is crucial to ensure complete treatment of the malignant target. Electrode vibration elastography is a shear wave imaging technique recently developed to monitor thermal ablation extent during treatment procedures. Previous work has shown good lateral boundary delineation of ablated volumes, but axial delineation was more ambiguous, which may have resulted from the assumption of lateral shear wave propagation. In this work, we assume both lateral and axial wave propagation and compare wave velocity images to those assuming only lateral shear wave propagation in finite element simulations, tissue-mimicking phantoms, and bovine liver tissue. Our results show that assuming bidirectional wave propagation minimizes artifacts above and below ablated volumes, yielding a more accurate representation of the ablated region on shear wave velocity images. Area overestimation was reduced from 13.4% to 3.6% in a stiff-inclusion tissue-mimicking phantom and from 9.1% to 0.8% in a radio-frequency ablation in bovine liver tissue. More accurate ablation representation during ablation procedures increases the likelihood of complete treatment of the malignant target, decreasing tumor recurrence. © 2012 IEEE

  15. Delineation of EFTUD2 haploinsufficiency-related phenotypes through a series of 36 patients.

    Science.gov (United States)

    Lehalle, Daphné; Gordon, Christopher T; Oufadem, Myriam; Goudefroye, Géraldine; Boutaud, Lucile; Alessandri, Jean-Luc; Baena, Neus; Baujat, Geneviève; Baumann, Clarisse; Boute-Benejean, Odile; Caumes, Roseline; Decaestecker, Charles; Gaillard, Dominique; Goldenberg, Alice; Gonzales, Marie; Holder-Espinasse, Muriel; Jacquemont, Marie-Line; Lacombe, Didier; Manouvrier-Hanu, Sylvie; Marlin, Sandrine; Mathieu-Dramard, Michèle; Morin, Gilles; Pasquier, Laurent; Petit, Florence; Rio, Marlène; Smigiel, Robert; Thauvin-Robinet, Christel; Vasiljevic, Alexandre; Verloes, Alain; Malan, Valérie; Munnich, Arnold; de Pontual, Loïc; Vekemans, Michel; Lyonnet, Stanislas; Attié-Bitach, Tania; Amiel, Jeanne

    2014-04-01

    Mandibulofacial dysostosis, Guion-Almeida type (MFDGA) is a recently delineated multiple congenital anomalies/mental retardation syndrome characterized by the association of mandibulofacial dysostosis (MFD) with external ear malformations, hearing loss, cleft palate, choanal atresia, microcephaly, intellectual disability, oesophageal atresia (OA), congenital heart defects (CHDs), and radial ray defects. MFDGA emerges as a clinically recognizable entity, long underdiagnosed due to highly variable presentations. The main differential diagnoses are CHARGE and Feingold syndromes, oculoauriculovertebral spectrum, and other MFDs. EFTUD2, located on 17q21.31, encodes a component of the major spliceosome and is disease causing in MFDGA, due to heterozygous loss-of-function (LoF) mutations. Here, we describe a series of 36 cases of MFDGA, including 24 previously unreported cases, and we review the literature in order to delineate the clinical spectrum ascribed to EFTUD2 LoF. MFD, external ear anomalies, and intellectual deficiency occur at a higher frequency than microcephaly. We characterize the evolution of the facial gestalt at different ages and describe novel renal and cerebral malformations. The most frequent extracranial malformation in this series is OA, followed by CHDs and skeletal abnormalities. MFDGA is probably more frequent than other syndromic MFDs such as Nager or Miller syndromes. Although the wide spectrum of malformations complicates diagnosis, characteristic facial features provide a useful handle.

  16. [Optimized definition and delineation of supraclavicular lymph nodes target in postmastectomy radiotherapy for breast cancer patients].

    Science.gov (United States)

    Huang, Shujing; Huang, Xiaobo; Wang, Xicheng; Zhang, Yujing; Sun, Jiayuan; He, Liru; Wen, Ge; He, Zhichun

    2014-07-01

    To explore the optimized methods to define and delineate supraclavicular lymph nodal target in postmastectomy radiotherapy for breast cancer patients. From September 2012 to August 2013, a total of 10 breast cancer patients at Sun Yan-sen University Cancer were selected for mastectomy plus postoperative radiotherapy. The clinical target volume (CTV) of every patient was delineated on CT-slices after computed tomography (CT) simulation by 6 radiation oncologists. Then the coverage discrepancy in anatomic lymphatic drainage subregions was analyzed among both CTVs by different oncologists and CTVs for patients with different clinical characters. The average volume of SCLN-CTVs was 110 ± 28 cm(3). All SCLN, neck-IV and axilla III regions were covered in CTV, none of axillaIregion. The covergy rates of nonsurgery-axillaII, Rotter-LN, intraclavicular-LN, neck-Vb, scalenus gap, neck-III and surgery-axilla IIregions was 75%, 85%, 73%, 88%, 68%, 10%, 17% , respectively. SCLN, neck-IV and axilla III regions should be covered according to consensus. However, the opinions of nonsurgery-axillaII, Rotter-LN, intraclavicular-LN, neck-Vb, scalenus gap, neck-III and surgery-axilla IIremain divisive.

  17. Kriging with cumulative distribution function of order statistics for delineation of heavy-metal contaminated soils

    Energy Technology Data Exchange (ETDEWEB)

    Juang, K.W.; Lee, D.Y.; Hsiao, C.K. [National Taiwan Univ., Tapei (Taiwan, Province of China)

    1998-10-01

    Accurate delineation of contaminated soils is essential for risk assessment and remediation. The probability of pollutant concentrations lower than a cutoff value is more important than the best estimate of pollutant concentrations for unsampled locations in delineating contaminated soils. In this study, a new method, kriging with the cumulative distribution function (CDF) of order statistics (CDF kriging), is introduced and compared with indicator kriging. It is used to predict the probability that extractable concentrations of Zn will be less than a cut-off value for soils to be declared hazardous. The 0.1 M HCl-extractable Zn concentrations of topsoil of a paddy field having an area of about 2000 ha located in Taiwan are used. A comparison of the CDF of order statistics and indicator function transformation shows that the variance and the coefficient of variation (CV) of the CDF of order statistics transformed data are smaller than those of the indicator function transformed data. This suggests that the CDF of order statistics transformation possesses less variability than does the indicator function transformation. In addition, based on cross-validation, CDF kriging is found to reduce the mean squared errors of estimations by about 30% and to reduce the mean kriging variances by about 26% compared with indicator kriging.

  18. Comparison of three nonparametric kriging methods for delineating heavy-metal contaminated soils

    Energy Technology Data Exchange (ETDEWEB)

    Juang, K.W.; Lee, D.Y

    2000-02-01

    The probability of pollutant concentrations greater than a cutoff value is useful for delineating hazardous areas in contaminated soils. It is essential for risk assessment and reclamation. In this study, three nonparametric kriging methods [indicator kriging, probability kriging, and kriging with the cumulative distribution function (CDF) of order statistics (CDF kriging)] were used to estimate the probability of heavy-metal concentrations lower than a cutoff value. In terms of methodology, the probability kriging estimator and CDF kriging estimator take into account the information of the order relation, which is not considered in indicator kriging. Since probability kriging has been shown to be better than indicator kriging for delineating contaminated soils, the performance of CDF kriging, which the authors propose, was compared with that of probability kriging in this study. A data set of soil Cd and Pb concentrations obtained from a 10-ha heavy-metal contaminated site in Taoyuan, Taiwan, was used. The results demonstrated that the probability kriging and CDF kriging estimations were more accurate than the indicator kriging estimation. On the other hand, because the probability kriging was based on the cokriging estimator, some unreliable estimates occurred in the probability kriging estimation. This indicated that probability kriging was not as robust as CDF kriging. Therefore, CDF kriging is more suitable than probability kriging for estimating the probability of heavy-metal concentrations lower than a cutoff value.

  19. Mapping of monthly soil erosion risk of mainland Mauritius and its aggregation with delineated basins

    Science.gov (United States)

    Nigel, Rody; Rughooputh, Soonil

    2010-01-01

    This paper reports the mapping of monthly soil erosion risk on Mauritius which was carried out using GIS, decision rules and readily available data namely, monthly rainfall depth, soil types, slope and land cover. Slope and soil were first combined to produce soil erosion susceptibility followed by land cover to produce erosion sensitivity, and then rainfall to produce erosion risk. The high erosion areas of the Island have been extracted from the soil erosion risk maps, whereby these areas can face land degradation problems and can be responsible for sediment discharge into wetlands located at the outlet of drainage basins. As such, drainage basins have been delineated using automatic catchment delineation tools and their percentage of high erosion areas computed. Basins with the greatest percentage of high erosion areas and particularly those that directly have a wetland at the outlet can be given priority for soil and water conservation efforts. The mapping reported in this paper can be adapted to other countries which need an erosion assessment for the identification of high erosion areas and priority action areas.

  20. Delineating gas bearing reservoir by using spectral decomposition attribute: Case study of Steenkool formation, Bintuni Basin

    Science.gov (United States)

    Haris, A.; Pradana, G. S.; Riyanto, A.

    2017-07-01

    Tectonic setting of the Bird Head Papua Island becomes an important model for petroleum system in Eastern part of Indonesia. The current exploration has been started since the oil seepage finding in Bintuni and Salawati Basin. The biogenic gas in shallow layer turns out to become an interesting issue in the hydrocarbon exploration. The hydrocarbon accumulation appearance in a shallow layer with dry gas type, appeal biogenic gas for further research. This paper aims at delineating the sweet spot hydrocarbon potential in shallow layer by applying the spectral decomposition technique. The spectral decomposition is decomposing the seismic signal into an individual frequency, which has significant geological meaning. One of spectral decomposition methods is Continuous Wavelet Transform (CWT), which transforms the seismic signal into individual time and frequency simultaneously. This method is able to make easier time-frequency map analysis. When time resolution increases, the frequency resolution will be decreased, and vice versa. In this study, we perform low-frequency shadow zone analysis in which the amplitude anomaly at a low frequency of 15 Hz was observed and we then compare it to the amplitude at the mid (20 Hz) and the high-frequency (30 Hz). The appearance of the amplitude anomaly at a low frequency was disappeared at high frequency, this anomaly disappears. The spectral decomposition by using CWT algorithm has been successfully applied to delineate the sweet spot zone.

  1. Specificity of lipoxygenase pathways supports species delineation in the marine diatom genus Pseudo-nitzschia.

    Directory of Open Access Journals (Sweden)

    Nadia Lamari

    Full Text Available Oxylipins are low-molecular weight secondary metabolites derived from the incorporation of oxygen into the carbon chains of polyunsaturated fatty acids (PUFAs. Oxylipins are produced in many prokaryotic and eukaryotic lineages where they are involved in a broad spectrum of actions spanning from stress and defense responses, regulation of growth and development, signaling, and innate immunity. We explored the diversity in oxylipin patterns in the marine planktonic diatom Pseudo-nitzschia. This genus includes several species only distinguishable with the aid of molecular markers. Oxylipin profiles of cultured strains were obtained by reverse phase column on a liquid chromatograph equipped with UV photodiode detector and q-ToF mass spectrometer. Lipoxygenase compounds were mapped on phylogenies of the genus Pseudo-nitzschia inferred from the nuclear encoded hyper-variable region of the LSU rDNA and the plastid encoded rbcL. Results showed that the genus Pseudo-nitzschia exhibits a rich and varied lipoxygenase metabolism of eicosapentaenoic acid (EPA, with a high level of specificity for oxylipin markers that generally corroborated the genotypic delineation, even among genetically closely related cryptic species. These results suggest that oxylipin profiles constitute additional identification tools for Pseudo-nitzschia species providing a functional support to species delineation obtained with molecular markers and morphological traits. The exploration of the diversity, patterns and plasticity of oxylipin production across diatom species and genera will also provide insights on the ecological functions of these secondary metabolites and on the selective pressures driving their diversification.

  2. Enhancing in vivo tumor boundary delineation with structured illumination fluorescence molecular imaging and spatial gradient mapping

    Science.gov (United States)

    Sun, Jessica; Miller, Jessica P.; Hathi, Deep; Zhou, Haiying; Achilefu, Samuel; Shokeen, Monica; Akers, Walter J.

    2016-08-01

    Fluorescence imaging, in combination with tumor-avid near-infrared (NIR) fluorescent molecular probes, provides high specificity and sensitivity for cancer detection in preclinical animal models, and more recently, assistance during oncologic surgery. However, conventional camera-based fluorescence imaging techniques are heavily surface-weighted such that surface reflection from skin or other nontumor tissue and nonspecific fluorescence signals dominate, obscuring true cancer-specific signals and blurring tumor boundaries. To address this challenge, we applied structured illumination fluorescence molecular imaging (SIFMI) in live animals for automated subtraction of nonspecific surface signals to better delineate accumulation of an NIR fluorescent probe targeting α4β1 integrin in mice bearing subcutaneous plasma cell xenografts. SIFMI demonstrated a fivefold improvement in tumor-to-background contrast when compared with other full-field fluorescence imaging methods and required significantly reduced scanning time compared with diffuse optical spectroscopy imaging. Furthermore, the spatial gradient mapping enhanced highlighting of tumor boundaries. Through the relatively simple hardware and software modifications described, SIFMI can be integrated with clinical fluorescence imaging systems, enhancing intraoperative tumor boundary delineation from the uninvolved tissue.

  3. pn-Junction Delineation in Si Devices Using Scanning Capacitance Spectroscopy

    Science.gov (United States)

    Edwards, Hal

    2000-03-01

    The scanning capacitance microscope (SCM) is a carrier-sensitive imaging tool based upon the well-known scanning-probe microscope (SPM). Scanning capacitance spectroscopy (SCS) is a new way to utilize an SCM to delineate pn junctions in Si devices. SCS produces two-dimensional pn-junction maps that show features as small as 10 nm. SCS also provides an estimate of the pn-junction depletion width and hence the doping level near the pn junction. We report SCS measurements of deep-submicron field-effect transistors, showing the source-drain extender profile. We show SCM and SCS data in a failure-analysis application, in which we determined the cause of a leaky field-effect transistor. SCM and SCS are powerful tools for Si bipolar transistors, in which the doping-related structures are quite complex. We show microscopic evidence of the narrow-emitter effect, and image the width of the pn junction to explain an electric field-induced hot-carrier reliability issue. We show a comparison of top-view and cross-sectional SCS measurements of nwell-nwell shallow-trench isolation structures, to reveal the effects of photoresist scumming in sub-design-rule isolation widths. We show initial results on a method to delineate constant-potential contours within the depletion region. We discuss the limits to our present understanding of SCM and SCS and some potential sources of error.

  4. Automated delineation of karst sinkholes from LiDAR-derived digital elevation models

    Science.gov (United States)

    Wu, Qiusheng; Deng, Chengbin; Chen, Zuoqi

    2016-08-01

    Sinkhole mapping is critical for understanding hydrological processes and mitigating geological hazards in karst landscapes. Current methods for identifying sinkholes are primarily based on visual interpretation of low-resolution topographic maps and aerial photographs with subsequent field verification, which is labor-intensive and time-consuming. The increasing availability of high-resolution LiDAR-derived digital elevation data allows for an entirely new level of detailed delineation and analyses of small-scale geomorphologic features and landscape structures at fine scales. In this paper, we present a localized contour tree method for automated extraction of sinkholes in karst landscapes. One significant advantage of our automated approach for sinkhole extraction is that it may reduce inconsistencies and alleviate repeatability concerns associated with visual interpretation methods. In addition, the proposed method has contributed to improving the sinkhole inventory in several ways: (1) detection of non-inventoried sinkholes; (2) identification of previously inventoried sinkholes that have been filled; (3) delineation of sinkhole boundaries; and (4) characterization of sinkhole morphometric properties. We applied the method to Fillmore County in southeastern Minnesota, USA, and identified three times as many sinkholes as the existing database for the same area. The results suggest that previous visual interpretation method might significantly underestimate the number of potential sinkholes in the region. Our method holds great potential for creating and updating sinkhole inventory databases at a regional scale in a timely manner.

  5. Delineation of Groundwater Potential Zone in Sengipatti for Thanjavur District using Analytical Hierarchy Process

    Science.gov (United States)

    Siva, G.; Nasir, N.; Selvakumar, R.

    2017-07-01

    Purpose of the ground water is very important to in our world. The condition of the ground water level and occurrence is differing from geological nature of earth. The present study, delineate the ground water potential zone in the hard rock terrain of Sengipatti and surrounding area using Remote sensing, Geographical Information System (GIS) and Multi Criteria Decision Making (MCDM) technique. The Analytical Hierarchy Process (AHP) technique is use to determined the weights of the different themes. Thus thematic layers drainage, geomorphology, land use/land cover, slope, lithology are prepare using Geological Survey of India Toposheets and IRS-IC satellite image. The weights are applied to the thematic layers after linear combination of the all layers. Finally delineate the possible ground water potential zone in the study area. Thus prospective zone are classify the three categories high, moderate, low. It has been total study area of the sengipatti region 32.28% of the area is high ground water potential zone and 34.1% area was moderate ground water potential zone and 33.63% area is low ground water potential zone.

  6. Delineating Neural Structures of Developmental Human Brains with Diffusion Tensor Imaging

    Directory of Open Access Journals (Sweden)

    Hao Huang

    2010-01-01

    Full Text Available The human brain anatomy is characterized by dramatic structural changes during fetal development. It is extraordinarily complex and yet its origin is a simple tubular structure. Revealing detailed anatomy at different stages of brain development not only aids in understanding this highly ordered process, but also provides clues to detect abnormalities caused by genetic or environmental factors. However, anatomical studies of human brain development during the fetal period are surprisingly scarce and histology-based atlases have become available only recently. Diffusion tensor imaging (DTI measures water diffusion to delineate the underlying neural structures. The high contrasts derived from DTI can be used to establish the brain atlas. With DTI tractography, coherent neural structures, such as white matter tracts, can be three-dimensionally reconstructed. The primary eigenvector of the diffusion tensor can be further explored to characterize microstructures in the cerebral wall of the developmental brains. In this mini-review, the application of DTI in order to reveal the structures of developmental fetal brains has been reviewed in the above-mentioned aspects. The fetal brain DTI provides a unique insight for delineating the neural structures in both macroscopic and microscopic levels. The resultant DTI database will provide structural guidance for the developmental study of human fetal brains in basic neuroscience, and reference standards for diagnostic radiology of premature newborns.

  7. Vital Importance of Delineation of Coronary Artery Anatomy in Atypical Congenital Giant Right Atrial Aneurysm

    Directory of Open Access Journals (Sweden)

    Malakan Rad

    2016-07-01

    Full Text Available Introduction Giant congenital right atrial aneurysm is a very rare congenital heart lesion, which may be asymptomatic or present a variety of symptoms, particularly supraventricular arrhythmias and intracardiac thrombosis formation. Case Presentation This is a report on a 3.5-month-old male infant with imperforated anus and an unusual-shaped congenital giant right atrial aneurysm with retro-ventricular extension. This unusual shape prevented appearance of cardiomegaly on the chest X-Ray. Surgical resection of the aneurysm was attempted. However, posterior descending coronary artery, which was embedded in the wall of the aneurysm, was irreversibly damaged during the operation. The patient died in the operation room. We concluded that pre-operative delineation of coronary arteries in cases with congenital giant right atrial aneurysm (CGRAA with extension to the posterior left ventricle is mandatory. Despite the current data that surgical excision of the aneurysm is the treatment of choice, our case required simple closure of the aneurysmal neck from inside the right atrium to be an easier and safer surgical approach for treatment of CGRAA with a tricky anatomy. Conclusions This case indicates that delineation of coronary artery anatomy in atypical congenital giant right atrial aneurysm is of vital importance. Closure of the aneurysmal sac, instead of aneurysmal resection, is a safer and more simple approach in atypical cases.

  8. DELINEATION OF STRUCTURAL DAMAGE FROM PIEZO-FIBRE-BASED SENSOR DEGRADATION

    Directory of Open Access Journals (Sweden)

    MOHAMMAD MEHDIZADEH

    2012-01-01

    Full Text Available This paper investigates diagnostic techniques to distinguish sensor degradation from structural damage, with a focus on interdigital piezoelectric fibre transducers. With the increasing application of structural health monitoring (SHM systems to manage the on-going integrity of safety-critical structures, it is important to improve the reliability of SHM systems by reducing erroneous information from sensors. This requires a new capability to delineate failures associated with sensors and the sensor network from actual damage in the structure being monitored. This is especially important when the deleterious structural changes in the sensor occurs without any discernible change in the structure being monitored In the present work, an assessment is carried out to quantify the degradation in the electric and electromechanical characteristics of polymer composite PZT sensors, under fatigue loading. Changes in the electrical properties of these sensors such as capacitance and inductance have been measured. Insight into the sensor damage was sought by comparingstrain measurements experimentally determined from the sensor to that determined theoretically. The results show that the delineation of structural damage from sensor degradation may be possible by monitoring the changes in the key electrical properties of the sensor components such as electrodes and PZT fibers.

  9. Improving superficial target delineation in radiation therapy with endoscopic tracking and registration

    Energy Technology Data Exchange (ETDEWEB)

    Weersink, R. A.; Qiu, J.; Hope, A. J.; Daly, M. J.; Cho, B. C. J.; DaCosta, R. S.; Sharpe, M. B.; Breen, S. L.; Chan, H.; Jaffray, D. A. [Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada) and Ontario Cancer Institute, University Health Network, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9, Canada and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada) and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9, Canada and Ontario Cancer Institute, University Health Network, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada) and Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada); Radiation Medicine Program, Princess Margaret Hospital, Toronto, Ontario M5G 2M9 (Canada); Department of Radiation Oncology, University of Toronto, Toronto, Ontario M5G 2M9 (Canada) and Ontario Cancer Institute, University Health Network, Toronto, Ontario M5G 2M9 (Canada)

    2011-12-15

    Purpose: Target delineation within volumetric imaging is a critical step in the planning process of intensity modulated radiation therapy. In endoluminal cancers, endoscopy often reveals superficial areas of visible disease beyond what is seen on volumetric imaging. Quantitatively relating these findings to the volumetric imaging is prone to human error during the recall and contouring of the target. We have developed a method to improve target delineation in the radiation therapy planning process by quantitatively registering endoscopic findings contours traced on endoscopic images to volumetric imaging. Methods: Using electromagnetic sensors embedded in an endoscope, 2D endoscopic images were registered to computed tomography (CT) volumetric images by tracking the position and orientation of the endoscope relative to a CT image set. Regions-of-interest (ROI) in the 2D endoscopic view were delineated. A mesh created within the boundary of the ROI was projected onto the 3D image data, registering the ROI with the volumetric image. This 3D ROI was exported to clinical radiation treatment planning software. The precision and accuracy of the procedure was tested on two solid phantoms with superficial markings visible on both endoscopy and CT images. The first phantom was T-shaped tube with X-marks etched on the interior. The second phantom was an anatomically correct skull phantom with a phantom superficial lesion placed on the pharyngeal surface. Markings were contoured on the endoscope images and compared with contours delineated in the treatment planning system based on the CT images. Clinical feasibility was tested on three patients with early stage glottic cancer. Image-based rendering using manually identified landmarks was used to improve the registration. Results: Using the T-shaped phantom with X-markings, the 2D to 3D registration accuracy was 1.5-3.5 mm, depending on the endoscope position relative to the markings. Intraobserver standard variation was 0

  10. Protective Clothing

    Science.gov (United States)

    1975-01-01

    CONTROL NO* /ZOMOS A0-6n9 164 NAVAL AIR ENGINEERING CENTER PHILADELPHIA PA AERONAUTICAL MATERIALS LAB METHODS OF SANITIZING AND DEODORIZING ...SANITIZING, DEODORIZING , AND ANTISTATIC AGENTS IS DESCRIBED* RECOMMENDATIONS ARE MADE FOR THE USE OF QUATERNARY AMMONIUM 1OMPOUNDS FOR SANITIZING AND...EQUIPMENT. HONEYCOMB CORES. SANDWICH CONSTRUCTION, METAL PLATES. ALUMINUM . TESTS. LAND MINES (U) SEVERAL OF THE BLAST PROTECTIVE COMBAT BOOT CONCEPTS

  11. Radiation protection

    CERN Multimedia

    Radioactive Shipping Service

    2005-01-01

    The section of the radiation protection group in charge of shipping radioactive material would like to remind users that all radioactive material leaving CERN must be checked for radioactivity and must be shipped according to the procedure given at http://cern.ch/service-rp-shipping Do not hesitate to contact us for any question or control. Radioactive Shipping Service: service-rp-shipping@cern.ch Tél. 73171

  12. Radiation protection

    CERN Document Server

    2005-01-01

    The section of the Radiation Protection Group in charge of shipping radioactive material would like to remind users that all radioactive material leaving CERN must be checked for radioactivity and must be shipped according to the procedure given at http://cern.ch/service-rp-shipping Do not hesitate to contact us for any question or control. Radioactive Shipping Service: service-rp-shipping@cern.ch Tel. 73171

  13. Radiation protection

    CERN Multimedia

    2005-01-01

    The section of the Radiation Protection Group in charge of shipping radioactive material would like to remind users that all radioactive material leaving CERN must be checked for radioactivity and must be shipped according to the procedure given at http://cern.ch/service-rp-shipping Do not hesitate to contact us for any question or control. Radioactive Shipping Service: service-rp-shipping@cern.ch Tél. 73171

  14. Delineating demographic units of woodland caribou (Rangifer tarandus caribou in Ontario: cautions and insights

    Directory of Open Access Journals (Sweden)

    Jennifer L. Shuter

    2012-03-01

    Full Text Available Delineating demographic structure across an organism’s range can reveal the extent to which population dynamics in different geographic areas are driven by local or external factors and can be crucial for effective conservation and management. Obtaining optimal data for such analyses can be time and resource-intensive and impending development and resource extraction pressures may necessitate the examination of existing data, even when they are less than ideal. We analyzed a historic telemetry dataset containing satellite radio-collar locations of 73 forest-dwelling woodland caribou in northern Ontario to determine demographic structure. We applied several clustering methods (i.e., agglomerative, divisive and fuzzy k-means to median seasonal locations. Results were used to distinguish demographic units and minimum convex polygons and fixed-kernel density estimates were used to delineate unit boundaries and core areas. For areas where sampling was considered representative of the distribution of caribou on the landscape, we assessed demographic distinctness by evaluating intra-individual variation in cluster membership, membership strength and distance between boundaries and core areas of adjacent units. The number and composition of clusters identified was similar among methods and caribou were grouped into 6 general clusters. The distinctions between the three clusters identified in the central portion of the province (i.e., Lac Seul, Wabakimi, Geraldton and the two clusters identified in the eastern portion of the province (i.e., Cochrane and Cochrane-Quebec were determined to represent demographic structuring. Additional distinctions in other areas (i.e., between The Red Lake and Lac Seul clusters in the west and between the central and eastern clusters may just be artifacts of the original sampling effort. Amongst demographic units, there was no evidence of individual flexibility in cluster membership and average membership strength was

  15. A strategy for delineating the area of ground-water contribution to wells completed in fractured bedrock aquifers in Pennsylvania

    Science.gov (United States)

    Risser, D.W.; Barton, G.J.

    1995-01-01

    Delineating a contributing area to a well completed in a fractured bedrock aquifer in Pennsylvania is difficult because the hydrogeologic characteristics of fractured rocks are extremely complex. Because of this complexity, a single method or technique to delineate a contributing area will not be applicable for all wells completed in fractured-bedrock aquifers. Therefore, a strategy for refining the understanding of boundary conditions and major heterogeneities that control ground-water flow and sources of water to a supply well is suggested. The strategy is based on developing and refining a conceptual model for the sources of water to the well. Specifically, the strategy begins with an initial conceptual model of the ground-water-flow system, then requires the collection of hydrogeologic information to refine the conceptual model in a stepwise manner from one or more of sic categories: (1) hydrogeologic mapping, (2) water-level and streamflow measurements, (3) geochemistry, (4) geophysics and borehole flowmetering, (5) aquifer testing, and (6) tracer testing. During the refinement process, the applicability of treating the fratured-rock aquifer as a hydrologic continuum is evaluated, and the contributing area is delineated. Choice of the method used to delineate the contributing area is less important than insuring that the method is consistent with the refined conceptual model. By use of such a strategy, the improved understanding of the ground-water-flow system will lead to a technically defensible delineation of the contributing area.

  16. An approach to delineate groundwater recharge potential sites in Ambalantota, Sri Lanka using GIS techniques

    Directory of Open Access Journals (Sweden)

    I.P. Senanayake

    2016-01-01

    Full Text Available The demand for fresh water in Hambantota District, Sri Lanka is rapidly increasing with the enormous amount of ongoing development projects in the region. Nevertheless, the district experiences periodic water stress conditions due to seasonal precipitation patterns and scarcity of surface water resources. Therefore, management of available groundwater resources is critical, to fulfil potable water requirements in the area. However, exploitation of groundwater should be carried out together with artificial recharging in order to maintain the long term sustainability of water resources. In this study, a GIS approach was used to delineate potential artificial recharge sites in Ambalantota area within Hambantota. Influential thematic layers such as rainfall, lineament, slope, drainage, land use/land cover, lithology, geomorphology and soil characteristics were integrated by using a weighted linear combination method. Results of the study reveal high to moderate groundwater recharge potential in approximately 49% of Ambalantota area.

  17. A method for delineation of bone surfaces in photoacoustic computed tomography of the finger

    CERN Document Server

    Biswas, Samir; Steenbergen, Wiendelt; Manohar, Srirang

    2015-01-01

    Photoacoustic imaging of interphalangeal peripheral joints is of interest in the context of using the synovial membrane as a surrogate marker of rheumatoid arthritis. Previous work has shown that ultrasound produced by absorption of light at the epidermis reflects on the bone surfaces within the finger. When the reflected signals are backprojected in the region of interest, artifacts are produced, confounding interpretation of the images. In this work, we present an approach where the photoacoustic signals known to originate from the epidermis, are treated as virtual ultrasound transmitters, and a separate reconstruction is performed as in ultrasound reflection imaging. This allows us to identify the bone surfaces. Further, the identification of the joint space is important as this provides a landmark to localize a region-of-interest in seeking the inflamed synovial membrane. The ability to delineate bone surfaces allows us not only to identify the artifacts, but also to identify the interphalangeal joint spa...

  18. Delineating Groundwater Contaminant Plums Using Self-Potential Surveying Method In Perth Area Australia

    Directory of Open Access Journals (Sweden)

    Okan Evans Onojasun

    2015-08-01

    Full Text Available Abstract Self-potential survey was carried out in Kalamunda area of Perth Western Australia with aim of delineating groundwater contaminant plums leakages. Two self-potential electrode configuration the roving dipole where one electrode is left in a base position while the other electrode scouts each survey position and the leapfrogging approach were potential differences are measured between consecutive sample stations along the line were employed to collect data. Results obtained from the experiments shows numerous small circular potential anomalies which could be interpreted as sources of leakages due to geothermal activity but the only trends that could be correlated across all surveys were the linear E-W trend which shows the location and the direction of the pipe underground to a depth of perhaps 2m. Other anomalies on the map show variations which could be as a result of trees interference on the observed data.

  19. Delineation of aquifers in basaltic hard rock terrain using vertical electrical soundings data

    Indian Academy of Sciences (India)

    S N Rai; S Thiagarajan; Y Ratna Kumari; V Anand Rao; A Manglik

    2013-02-01

    The region under investigation for groundwater exploration is a part of the eastern fringe of Deccan traps in Kalmeshwar Taluk of Nagpur district. In this region, groundwater is the main source of water supply for drinking and irrigation purposes. Presently, the known source of groundwater is the upper weathered mantle in the depth range of 8–15 m. This source of groundwater has been overexploited because of increasing demand of water supply and is unable to meet the present requirement. The present work deals with the delineation of new sources of groundwater at deeper levels concealed within and below the traps by using vertical electrical sounding surveys in order to meet the increasing demand of water supply.

  20. Effective delineation of urban flooded areas based on aerial ortho-photo imagery

    Science.gov (United States)

    Zhang, Ying; Guindon, Bert; Raymond, Don; Hong, Gang

    2016-10-01

    The combination of rapid global urban growth and climate change has resulted in increased occurrence of major urban flood events across the globe. The distribution of flooded area is one of the key information layers for applications of emergency planning and response management. While SAR systems and technologies have been widely used for flood area delineation, radar images suffer from range ambiguities arising from corner reflection effects and shadowing in dense urban settings. A new mapping framework is proposed for the extraction and quantification of flood extent based on aerial optical multi-spectral imagery and ancillary data. This involves first mapping of flood areas directly visible to the sensor. Subsequently, the complete area of submergence is estimated from this initial mapping and inference techniques based on baseline data such as land cover and GIS information such as available digital elevation models. The methodology has been tested and proven effective using aerial photography for the case of the 2013 flood in Calgary, Canada.

  1. An approach to delineate groundwater recharge potential sites in Ambalantota, Sri Lanka using GIS techniques

    Institute of Scientific and Technical Information of China (English)

    I.P. Senanayake; D.M.D.O.K. Dissanayake; B.B. Mayadunna; W.L. Weerasekera

    2016-01-01

    The demand for fresh water in Hambantota District, Sri Lanka is rapidly increasing with the enormous amount of ongoing development projects in the region. Nevertheless, the district experiences periodic water stress conditions due to seasonal precipitation patterns and scarcity of surface water resources. Therefore, management of available groundwater resources is critical, to fulfil potable water re-quirements in the area. However, exploitation of groundwater should be carried out together with artificial recharging in order to maintain the long term sustainability of water resources. In this study, a GIS approach was used to delineate potential artificial recharge sites in Ambalantota area within Ham-bantota. Influential thematic layers such as rainfall, lineament, slope, drainage, land use/land cover, li-thology, geomorphology and soil characteristics were integrated by using a weighted linear combination method. Results of the study reveal high to moderate groundwater recharge potential in approximately 49%of Ambalantota area.

  2. Full Tensor Gradient of Simulated Gravity Data for Prospect Scale Delineation

    Directory of Open Access Journals (Sweden)

    Hendra Grandis

    2014-07-01

    Full Text Available Gravity gradiometry measurement allows imaging of anomalous sources in more detail than conventional gravity data. The availability of this new technique is limited to airborne gravity surveys using very specific instrumentation. In principle, the gravity gradients can be calculated from the vertical component of the gravity commonly measured in a ground-based gravity survey. We present a calculation of the full tensor gradient (FTG of the gravity employing the Fourier transformation. The calculation was applied to synthetic data associated with a simple block model and also with a more realistic model. The latter corresponds to a 3D model in which a thin coal layer is embedded in a sedimentary environment. Our results show the utility of the FTG of the gravity for prospect scale delineation.

  3. A whole body atlas for segmentation and delineation of organs for radiation therapy planning

    Science.gov (United States)

    Qatarneh, S. M.; Crafoord, J.; Kramer, E. L.; Maguire, G. Q.; Brahme, A.; Noz, M. E.; Hyödynmaa, S.

    2001-09-01

    A semi-automatic procedure for delineation of organs to be used as the basis of a whole body atlas database for radiation therapy planning was developed. The Visible Human Male Computed Tomography (CT)-data set was used as a "standard man" reference. The organ of interest was outlined manually and then transformed by a polynomial warping algorithm onto a clinical patient CT. This provided an initial contour, which was then adjusted and refined by the semi-automatic active contour model to find the final organ outline. The liver was used as a test organ for evaluating the performance of the procedure. Liver outlines obtained by the segmentation algorithm on six patients were compared to those manually drawn by a radiologist. The combination of warping and semi-automatic active contour model generally provided satisfactory segmentation results, but the procedure has to be extended to three dimensions.

  4. The Principle and Method for Delineation of Potential Seismic Sources in Northwest Yunnan

    Institute of Scientific and Technical Information of China (English)

    Zhou Qing; Guo Shunmin; Xiang Hongfa

    2005-01-01

    Based on the collection and analysis of achievements of other scholars, and by consulting the results of seismic safety evaluation of engineering sites and field surveys of recent years, the seismotectonic indicators are determined for northwest Yunnan and its vicinity, and then potential seismic sources are further delineated. In practice, the following principles are applied: for areas with strong historical earthquakes, the recurrence principle is used to determine the upper bound magnitude; for areas with distinct seismogenic structure but no historical strong earthquake records, the tectonic analogy principle is used in the light of the size and activity behavior of the structure; for areas where the segmentation of the active fault is well studied, the potential sources will be demarcated more precisely; and for areas with buried fault, the seismicity pattern and geophysical abnormity are used to determine the direction of the major axis of the potential seismic source.

  5. Protecting Antarctica

    Science.gov (United States)

    Carlowicz, Michael

    House Science Committee Chairman Robert Walker (R-Pa.) has introduced a bill into Congress to give the United States the legislative authority to implement the 1991 Environmental Protocol to the Antarctic Treaty. That protocol established rules and principles to shield the Antarctic environment from human spoilage—placing limits on the discharge of pollutants, protecting plant and animal life, and requiring environmental impact assessments before new activities and programs are launched. The protocol also forbids prospecting or developing of mineral resources except for scientific research.

  6. Delineating active faults by using integrated geophysical data at northeastern part of Cairo, Egypt

    Directory of Open Access Journals (Sweden)

    Sultan Awad Sultan Araffa

    2012-06-01

    Full Text Available Geophysical techniques such as gravity, magnetic and seismology are perfect tools for detecting subsurface structures of local, regional as well as of global scales. The study of the earthquake records can be used for differentiating the active and non active fault elements. In the current study more than 2200 land magnetic stations have been measured by using two proton magnetometers. The data is corrected for diurnal variations and then reduced by IGRF. The corrected data have been interpreted by different techniques after filtering the data to separate shallow sources (basaltic sheet from the deep sources (basement complex. Both Euler deconvolution and 3-D magnetic modeling have been carried out. The results of our interpretation have indicated that the depth to the upper surface of basaltic sheet ranges from less than 10–600 m, depth to the lower surface ranges from 60 to 750 m while the thickness of the basaltic sheet varies from less than 10–450 m. Moreover, gravity measurements have been conducted at the 2200 stations using a CG-3 gravimeter. The measured values are corrected to construct a Bouguer anomaly map. The least squares technique is then applied for regional residual separation. The third order of least squares is found to be the most suitable to separate the residual anomalies from the regional one. The resultant third order residual gravity map is used to delineate the structural fault systems of different characteristic trends. The trends are a NW–SE trend parallel to that of Gulf of Suez, a NE–SW trend parallel to the Gulf of Aqaba and an E–W trend parallel to the trend of Mediterranean Sea. Taking seismological records into consideration, it is found that most of 24 earthquake events recorded in the study area are located on fault elements. This gives an indication that the delineated fault elements are active.

  7. Retroperitoneal Sarcoma Target Volume and Organ at Risk Contour Delineation Agreement Among NRG Sarcoma Radiation Oncologists

    Energy Technology Data Exchange (ETDEWEB)

    Baldini, Elizabeth H., E-mail: ebaldini@partners.org [Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women' s Hospital, Boston, Massachusetts (United States); Abrams, Ross A. [Department of Radiation Oncology, Rush University Medical Center, Chicago, Illinois (United States); Bosch, Walter [Department of Radiation Oncology, Washington University, St. Louis, Missouri (United States); Roberge, David [Department of Radiation Oncology, Centre Hospitalier de l' Universite de Montreal, Montreal, Quebec (Canada); Haas, Rick L.M. [Department of Radiotherapy, Netherlands Cancer Institute, Amsterdam (Netherlands); Catton, Charles N. [Department of Radiation Oncology, Princess Margaret Cancer Centre, Toronto, Ontario (Canada); Indelicato, Daniel J. [Department of Radiation Oncology, University of Florida Medical Center, Jacksonville, Florida (United States); Olsen, Jeffrey R. [Department of Radiation Oncology, Washington University, St. Louis, Missouri (United States); Deville, Curtiland [Department of Radiation Oncology, University of Pennsylvania, Philadelphia, Pennsylvania (United States); Chen, Yen-Lin [Department of Radiation Oncology, Massachusetts General Hospital, Boston, Massachusetts (United States); Finkelstein, Steven E. [Translational Research Consortium, 21st Century Oncology, Scottsdale, Arizona (United States); DeLaney, Thomas F. [Department of Radiation Oncology, Massachusetts General Hospital, Boston, Massachusetts (United States); Wang, Dian [Department of Radiation Oncology, Rush University Medical Center, Chicago, Illinois (United States)

    2015-08-01

    Purpose: The purpose of this study was to evaluate the variability in target volume and organ at risk (OAR) contour delineation for retroperitoneal sarcoma (RPS) among 12 sarcoma radiation oncologists. Methods and Materials: Radiation planning computed tomography (CT) scans for 2 cases of RPS were distributed among 12 sarcoma radiation oncologists with instructions for contouring gross tumor volume (GTV), clinical target volume (CTV), high-risk CTV (HR CTV: area judged to be at high risk of resulting in positive margins after resection), and OARs: bowel bag, small bowel, colon, stomach, and duodenum. Analysis of contour agreement was performed using the simultaneous truth and performance level estimation (STAPLE) algorithm and kappa statistics. Results: Ten radiation oncologists contoured both RPS cases, 1 contoured only RPS1, and 1 contoured only RPS2 such that each case was contoured by 11 radiation oncologists. The first case (RPS 1) was a patient with a de-differentiated (DD) liposarcoma (LPS) with a predominant well-differentiated (WD) component, and the second case (RPS 2) was a patient with DD LPS made up almost entirely of a DD component. Contouring agreement for GTV and CTV contours was high. However, the agreement for HR CTVs was only moderate. For OARs, agreement for stomach, bowel bag, small bowel, and colon was high, but agreement for duodenum (distorted by tumor in one of these cases) was fair to moderate. Conclusions: For preoperative treatment of RPS, sarcoma radiation oncologists contoured GTV, CTV, and most OARs with a high level of agreement. HR CTV contours were more variable. Further clarification of this volume with the help of sarcoma surgical oncologists is necessary to reach consensus. More attention to delineation of the duodenum is also needed.

  8. Middle longitudinal fasciculus delineation within language pathways: A diffusion tensor imaging study in human

    Energy Technology Data Exchange (ETDEWEB)

    Menjot de Champfleur, Nicolas, E-mail: nicolasdechampfleur@orange.fr [Department of Neuroradiology, University Hospital Center, Gui de Chauliac Hospital, Montpellier (France); Team “Plasticity of Central Nervous System, Stem Cells and Glial Tumors,” Institut National de la Santé et de la Recherche Médicale Unité 1051, Institut of Neurosciences of Montpellier, Saint Eloi Hospital, Montpellier (France); Lima Maldonado, Igor [Department of Neuroradiology, University Hospital Center, Gui de Chauliac Hospital, Montpellier (France); Team “Plasticity of Central Nervous System, Stem Cells and Glial Tumors,” Institut National de la Santé et de la Recherche Médicale Unité 1051, Institut of Neurosciences of Montpellier, Saint Eloi Hospital, Montpellier (France); Divisão de Neurologia e Epidemiologia (CPPHO), Complexo Hospital Universitário Professor Edgard Santos, Universidade Federal da Bahia, Salvador-Bahia (Brazil); Moritz-Gasser, Sylvie [Department of Neuroradiology, University Hospital Center, Gui de Chauliac Hospital, Montpellier (France); Department of Neurology, University Hospital Center, Gui de Chauliac Hospital, Montpellier (France); Machi, Paolo [Department of Neuroradiology, University Hospital Center, Gui de Chauliac Hospital, Montpellier (France); and others

    2013-01-15

    Introduction: The existence in the human brain of the middle longitudinal fasciculus (MdLF), initially described in the macaque monkey, is supported by diffusion tensor imaging studies. In the present work, we aim (1) to confirm that this fascicle is found constantly in control subjects with the use of DTI techniques and (2) to delineate the MdLF from the other fiber bundles that constitute the language pathways. Materials and methods: Tractography was realized in four right-handed healthy volunteers for the arcuate fascicle, uncinate fascicle, inferior fronto-occipital fascicle, inferior longitudinal fascicle and the middle longitudinal fascicle. The fiber tracts were characterized for their size, mean fractional anisotropy (FA), for their length, number of streamlines, and lateralization indices were calculated. Results: The MdLF is found constantly and it is clearly delineated from the other fascicles that constitute the language pathways, especially the ventral pathway. It runs within the superior temporal gyrus white matter from the temporal pole, then it extends caudally in the upper part of the sagittal stratum and the posterior part of the corona radiata, to reach the inferior parietal lobule (angular gyrus). We found a leftward asymmetry for all fiber tracts when considering the mean FA. Discussion: Using DTI methods, we confirm that the MdLF connects the angular gyrus and the superior temporal gyrus. On the basis of these findings, the role of the MdLF is discussed. Conclusion: The middle longitudinal fasciculus, connects the angular gyrus and the superior temporal gyrus and its course can be systematically differenciated from those of other fascicles composing both ventral and dorsal routes (IFOF, IFL, AF and UF)

  9. Comparing Gross Tumor Volume of Delineation between CT and MRI for Nasopharyngeal Carcinoma

    Institute of Scientific and Technical Information of China (English)

    TANGXi; HUGuoqing; QIUHong; CUIWei

    2005-01-01

    Objective: To study the accuracy between CT and MRI in delineating gross tumor volume (GTV) of nasopharyngeal carcinoma (NPC) in making radiotherapy plan. Methods: The clinical data of 39 cases pathologically proven as nasopharyngeal carcinoma selected from April 2003 to September 2004 were retrospectively analyzed. All were subjected to CT and MR examination one week before treatment.CT scanning was performed with GE Light speed 16, and axial scan was parallel to the OM line routinely from soft palate to the suprasellar cistern. MR scanning was performed by GE Signa super-conducting magnetic resonance imaging system (1.5 Tesla). The standard quadrature head coil was used. Routine axial, sagittal and coronal image with SE sequence were obtained, and FLAIR was used in 10 of 21 cases.Scanned field ranged from the soft palate to the suprasellar cistern. Part of all cases underwent enhanced scanned with Ultravist in CT group or/and GD-DTPA in MR group. All data were analyzed by using the paired-samples t test. Results: The media primary tumor volume (cm3) in CT group and MR group was 32.49±19.91, 29.06±18.75, respectively, and the difference between the two groups were significant (t=5.268, P=0.000). There was significant difference between the two groups in early stage (T1+T2) and advanced stage (T3+T4) by Fuzhou Staging System (t=5.677, P=0.000; t=3.310, P=0.005, respectively).There was significant difference in stage T1, T2, T3 (P=0.005, P=0.001, P=0.004, respectively), and not in stage T4 (P=0.146) between the two groups. Conclusion: MR was more accurate than CT in delineating GTV of NPC, so, is more valuable in making radiotherapy plan.

  10. Use of Latent Variable Modeling to Delineate Psychiatric and Cognitive Profiles in Parkinson’s Disease

    Science.gov (United States)

    Mavandadi, Shahrzad; Nazem, Sarra; Ten Have, Thomas R.; Siderowf, Andrew D.; Duda, John E.; Stern, Matthew B.; Weintraub, Daniel

    2010-01-01

    Objectives A range of psychiatric symptoms and cognitive deficits occur in Parkinson’s disease (PD), and symptom overlap and co-morbidity complicate the classification of non-motor symptoms. The objective of this study was to use analytic-based approaches to classify psychiatric and cognitive symptoms in PD. Design Cross-sectional evaluation of a convenience sample of patients in specialty care. Setting Two outpatient movement disorders centers at the University of Pennsylvania and Philadelphia Veterans Affairs Medical Center. Participants 177 patients with mild-moderate idiopathic PD and without significant global cognitive impairment. Measurements Subjects were assessed with an extensive psychiatric, neuropsychological, and neurological battery. Latent class analysis (LCA) was used to statistically delineate group-level symptom profiles across measures of psychiatric and cognitive functioning. Predictors of class membership were also examined. Results Results from the LCA indicated that a four-class solution best fit the data. 32.3% of the sample had good psychiatric and normal cognitive functioning, 17.5% had significant psychiatric co-morbidity but normal cognition, 26.0% had few psychiatric symptoms but had poorer cognitive functioning across a range of cognitive domains, and 24.3% had both significant psychiatric co-morbidity and poorer cognitive functioning. Age, disease severity, and medication use predicted class membership. Conclusions LCA delineates four classes of patients in mild-moderate PD, three of which experience significant non-motor impairments and comprise over two-thirds of patients. Neuropsychiatric symptoms and cognitive deficits follow distinct patterns in PD, and further study is needed to determine if these classes are generalizable, stable, predict function, quality of life and long-term outcomes, and are amenable to treatment at a class level. PMID:19855199

  11. Delineation of a landfill leachate plume using shallow electromagnetic and ground-penetrating radar surveys

    Energy Technology Data Exchange (ETDEWEB)

    Nobes, D.C.; Armstrong, M.J. [Univ. of Canterbury, Christchurch (New Zealand); Broadbent, M. [Broadbent (Michael), Christchurch (New Zealand)

    1994-12-31

    Leachate plumes are often more electrically conductive than the surrounding host pore waters, and thus can be detected using shallow electromagnetic (EM) methods. The depth of penetration of ground penetrating radar (GPR) is controlled to a large extent by the electrical conductivity. Conductive leachate plumes will appear as ``blank`` areas in the radar profiles, because the radar energy is more severely attenuated in the region of the leachate plume. The authors present here the results of EM and GPR Surveys carried out in an area adjacent to a landfill site. Previous resistivity surveys indicated the presence of a leachate plume originating from an early stage of the landfill operation. The shallow EM and GPR surveys were carried out, in part, to confirm and refine the resistivity results, and to delineate the spatial extent of the plume. The surficial sediments are coastal sands, and the dune topography has an effect on the EM results, even though the variations in elevation are, in general, no more than 3 m. Besides the leachate plume, numerous conductivity highs and lows are present, which are at least coarsely correlated with topographic lows and highs. Following the empirical procedure outlined by Monier-Williams et al. (1990), the topographic effects have been removed, and the plume is better isolated and delineated. A possible second, weaker leachate plume has been identified, emanating from the current landfill operation. The second plume may follow a channel that was masked by the overlying dune sands. The leading edge of the primary leachate plume is moving to the south-southeast at a rate of 14 to 15 m/yr.

  12. Delineation of atherosclerotic plaque using subharmonic imaging filtering techniques and a commercial intravascular ultrasound system.

    Science.gov (United States)

    Sridharan, Anush; Eisenbrey, John R; Machado, Priscilla; deMuinck, Ebo D; Doyley, Marvin M; Forsberg, Flemming

    2013-01-01

    The ability to delineate atherosclerotic plaque from the surrounding tissue using custom-developed subharmonic imaging (SHI) digital filtering techniques was investigated in vivo using a commercially available system. Atherosclerosis was induced in the aorta of two Watanabe Heritable Hyperlipidemic rabbits following which injections of an ultrasound contrast agent (UCA) Definity (Lantheus Medical Imaging, N Billerica, Massachusetts) were administered. Imaging was performed using a Galaxy intravascular ultrasound (IVUS) scanner (Boston Scientific, Natick, Massachusetts) equipped with an Atlantis® SR Pro Imaging Catheter (Boston Scientific). Four preliminary band-pass filters were designed to isolate the subharmonic signal (from surrounding tissue) and applied to the radio-frequency (RF) data. Preliminary filter performances were compared in terms of vessel-tissue contrast-to-tissue ratio (CTR) and visual examination. Based on preliminary results, a subharmonic adaptive filter and a stopband (SB) filter were designed and applied to the RF data. Images were classified as fundamental, SHI, and SB. Four readers performed qualitative analysis of 168 randomly selected images (across all three imaging modes). The images were scored for overall image quality, image noise, plaque visualization, and vessel lumen visualization. A Wilcoxon signed-rank test was used to compare the scores followed by intraclass correlation (ICC) evaluation. Quantitative analysis was performed by calculating the CTRs for the vessel-to-plaque and vessel-to-tissue (compared using a paired student's t test). Qualitative analysis showed SHI and SB to have significantly less image noise relative to the fundamental mode (p < 0.001). Fundamental mode scored significantly higher than SHI and SB for the remaining three categories. ICC showed mixed results among reader evaluation for delineation of plaque. However, quantitatively, SHI produced the best vessel-plaque CTR.

  13. A System for Continual Quality Improvement of Normal Tissue Delineation for Radiation Therapy Treatment Planning

    Energy Technology Data Exchange (ETDEWEB)

    Breunig, Jennifer; Hernandez, Sophy; Lin, Jeffrey; Alsager, Stacy; Dumstorf, Christine; Price, Jennifer; Steber, Jennifer; Garza, Richard; Nagda, Suneel; Melian, Edward; Emami, Bahman [Department of Radiation Oncology, Loyola University Medical Center, Maywood, Illinois (United States); Roeske, John C., E-mail: jroeske@lumc.edu [Department of Radiation Oncology, Loyola University Medical Center, Maywood, Illinois (United States)

    2012-08-01

    Purpose: To implement the 'plan-do-check-act' (PDCA) cycle for the continual quality improvement of normal tissue contours used for radiation therapy treatment planning. Methods and Materials: The CT scans of patients treated for tumors of the brain, head and neck, thorax, pancreas and prostate were selected for this study. For each scan, a radiation oncologist and a diagnostic radiologist, outlined the normal tissues ('gold' contours) using Radiation Therapy Oncology Group (RTOG) guidelines. A total of 30 organs were delineated. Independently, 5 board-certified dosimetrists and 1 trainee then outlined the same organs. Metrics used to compare the agreement between the dosimetrists' contours and the gold contours included the Dice Similarity Coefficient (DSC), and a penalty function using distance to agreement. Based on these scores, dosimetrists were re-trained on those organs in which they did not receive a passing score, and they were subsequently re-tested. Results: Passing scores were achieved on 19 of 30 organs evaluated. These scores were correlated to organ volume. For organ volumes <8 cc, the average DSC was 0.61 vs organ volumes {>=}8 cc, for which the average DSC was 0.91 (P=.005). Normal tissues that had the lowest scores included the lenses, optic nerves, chiasm, cochlea, and esophagus. Of the 11 organs that were considered for re-testing, 10 showed improvement in the average score, and statistically significant improvement was noted in more than half of these organs after education and re-assessment. Conclusions: The results of this study indicate the feasibility of applying the PDCA cycle to assess competence in the delineation of individual organs, and to identify areas for improvement. With testing, guidance, and re-evaluation, contouring consistency can be obtained across multiple dosimetrists. Our expectation is that continual quality improvement using the PDCA approach will ensure more accurate treatments and dose

  14. Adaptive sampling based on the cumulative distribution function of order statistics to delineate heavy-metal contaminated soils using kriging.

    Science.gov (United States)

    Juang, Kai-Wei; Lee, Dar-Yuan; Teng, Yun-Lung

    2005-11-01

    Correctly classifying "contaminated" areas in soils, based on the threshold for a contaminated site, is important for determining effective clean-up actions. Pollutant mapping by means of kriging is increasingly being used for the delineation of contaminated soils. However, those areas where the kriged pollutant concentrations are close to the threshold have a high possibility for being misclassified. In order to reduce the misclassification due to the over- or under-estimation from kriging, an adaptive sampling using the cumulative distribution function of order statistics (CDFOS) was developed to draw additional samples for delineating contaminated soils, while kriging. A heavy-metal contaminated site in Hsinchu, Taiwan was used to illustrate this approach. The results showed that compared with random sampling, adaptive sampling using CDFOS reduced the kriging estimation errors and misclassification rates, and thus would appear to be a better choice than random sampling, as additional sampling is required for delineating the "contaminated" areas.

  15. Protective Coatings

    Science.gov (United States)

    1980-01-01

    General Magnaplate Corporation's pharmaceutical machine is used in the industry for high speed pressing of pills and capsules. Machine is automatic system for molding glycerine suppositories. These machines are typical of many types of drug production and packaging equipment whose metal parts are treated with space spinoff coatings that promote general machine efficiency and contribute to compliance with stringent federal sanitation codes for pharmaceutical manufacture. Collectively known as "synergistic" coatings, these dry lubricants are bonded to a variety of metals to form an extremely hard slippery surface with long lasting self lubrication. The coatings offer multiple advantages; they cannot chip, peel or be rubbed off. They protect machine parts from corrosion and wear longer, lowering maintenance cost and reduce undesired heat caused by power-robbing friction.

  16. Offspring Protection

    Directory of Open Access Journals (Sweden)

    Eric T. Steiner

    2016-08-01

    Full Text Available Parental aggression, that is, offspring protection aggression, can be viewed as a type of parental investment. Most mammalian males do not exhibit parental investment and therefore exhibit little, if any, parental aggression. Men demonstrate parental investment, and are typically more physically aggressive than women, but parental physical aggression in humans has been largely unexplored. The current study examined potential sex differences in estimates of parental physical aggression involving hypothetical situations, while controlling for general physical aggression. A self-report measure was administered to 217 students from a western U.S. university (55 male nonparents, 50 female nonparents, 54 fathers, and 58 mothers. Male nonparents reported higher parental physical aggression than female nonparents, but there was no difference between mothers and fathers. The results are interpreted in light of ancestral effects of sexual selection and proximal effects of sex differences in testosterone, risk taking, and fear aversion.

  17. Low-activity spectrometric gamma-ray logging technique for delineation of coal/rock interfaces in dry blast holes.

    Science.gov (United States)

    Asfahani, J; Borsaru, M

    2007-06-01

    A low-activity spectrometric gamma-ray logging technique is proposed in this paper as a sensitive tool for the delineation of coal/rock interfaces in dry blast holes. The advantages and superiority of this technique over traditional micro-density non-spectrometric gamma-ray tools are demonstrated.

  18. A proposal for the geographic delineation of boundaries of the "Val d'Agri-Lagonegrese" National Park

    Directory of Open Access Journals (Sweden)

    Pierangeli D

    2007-01-01

    Full Text Available In this work, different proposal are reviewed that have been moved for geographical delineation and boundaries definition of the National Park "Val d'Agri and Lagonegrese" in Basilicata (Italy and a working methodology is proposed for a better definition of the park boundaries, taking into consideration oil extraction activities carried out in the area.

  19. Delineation of Roles and Functions of Diagnostic Radiologic Technology Personnel and Development of Proficiency Tests; Final Report.

    Science.gov (United States)

    Educational Testing Service, Princeton, NJ.

    The specific role, function, and qualifications for six jobs in diagnostic radiologic technology (excluding physicians and health physicists) were delineated through task analyses. The levels are not job titles but can be described in terms of function. Among other duties, the Level I position provides nonspecialized assistance to radiologic…

  20. Target volume delineation and field setup. A practical guide for conformal and intensity-modulated radiation therapy

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Nancy Y. [Memorial Sloan-Kettering Cancer Center, New York, NY (United States). Radiation Oncology; Lu, Jiade J. (eds.) [National Univ. Health System, Singapore (Singapore). Dept. of Radiation Oncology; National Univ. of Singapore (Singapore). Dept. of Medicine

    2013-03-01

    Practical handbook on selection and delineation of tumor volumes and fields for conformal radiation therapy, including IMRT. Helpful format facilitating use on a step-by-step basis in daily practice. Designed to ensure accurate coverage of commonly encountered tumors along their routes of spread. This handbook is designed to enable radiation oncologists to appropriately and confidently delineate tumor volumes/fields for conformal radiation therapy, including intensity-modulated radiation therapy (IMRT), in patients with commonly encountered cancers. The orientation of this handbook is entirely practical, in that the focus is on the illustration of clinical target volume (CTV) delineation for each major malignancy. Each chapter provides guidelines and concise knowledge on CTV selection for a particular disease, explains how the anatomy of lymphatic drainage shapes the selection of the target volume, and presents detailed illustrations of volumes, slice by slice, on planning CT images. While the emphasis is on target volume delineation for three-dimensional conformal therapy and IMRT, information is also provided on conventional radiation therapy field setup and planning for certain malignancies for which IMRT is not currently suitable.

  1. Harmonization of the Volume of Interest Delineation among All Eleven Radiotherapy Centers in the North of France.

    Directory of Open Access Journals (Sweden)

    David Pasquier

    Full Text Available Inter-observer delineation variation has been detailed for many years in almost every tumor location. Inadequate delineation can impair the chance of cure and/or increase toxicity. The aim of our original work was to prospectively improve the homogeneity of delineation among all of the senior radiation oncologists in the Nord-Pas de Calais region, irrespective of the conditions of practice.All 11 centers were involved. The first studied cancer was prostate cancer. Three clinical cases were studied: a low-risk prostate cancer case (case 1, a high-risk prostate cancer case (pelvic nodes, case 2 and a case of post-operative biochemical elevated PSA (case 3. All of the involved physicians delineated characteristically the clinical target volume (CTV and organs at risk. The volumes were compared using validated indexes: the volume ratio (VR, common and additional volumes (CV and AV, volume overlap (VO and Dice similarity coefficient (DSC. A second delineation of the same three cases was performed after discussion of the slice results and the choice of shared guidelines to evaluate homogenization. A comparative analysis of the indexes before and after discussion was conducted using the Wilcoxon test for paired samples. A p-value less than 0.05 was considered to indicate statistical significance.The indexes were not improved in case 1, for which the inter-observer agreement was considered good after the first comparison (DSC = 0.83 ± 0.06. In case 2, the second comparison showed homogenization of the CTV delineation with a significant improvement in CV (81.4 ± 11.7 vs. 88.6 ± 10.26, respectively, p = 0.048, VO (0.41 ± 0.09 vs. 0.47 ± 0.07, respectively; p = 0.009 and DSC (0.58 ± 0.09 vs. 0.63 ± 0.07, respectively; p = 0.0098. In case 3, VR and AV were significantly improved: VR: 1.71(± 0.6 vs. 1.34(± 0.46, respectively, p = 0.0034; AV: 46.58(± 14.50 vs. 38.08(± 15.10, respectively, p = 0.0024. DSC was not improved, but it was already

  2. Protecting Information

    Science.gov (United States)

    Loepp, Susan; Wootters, William K.

    2006-09-01

    For many everyday transmissions, it is essential to protect digital information from noise or eavesdropping. This undergraduate introduction to error correction and cryptography is unique in devoting several chapters to quantum cryptography and quantum computing, thus providing a context in which ideas from mathematics and physics meet. By covering such topics as Shor's quantum factoring algorithm, this text informs the reader about current thinking in quantum information theory and encourages an appreciation of the connections between mathematics and science.Of particular interest are the potential impacts of quantum physics:(i) a quantum computer, if built, could crack our currently used public-key cryptosystems; and (ii) quantum cryptography promises to provide an alternative to these cryptosystems, basing its security on the laws of nature rather than on computational complexity. No prior knowledge of quantum mechanics is assumed, but students should have a basic knowledge of complex numbers, vectors, and matrices. Accessible to readers familiar with matrix algebra, vector spaces and complex numbers First undergraduate text to cover cryptography, error-correction, and quantum computation together Features exercises designed to enhance understanding, including a number of computational problems, available from www.cambridge.org/9780521534765

  3. Identifying tree crown delineation shapes and need for remediation on high resolution imagery using an evidence based approach

    Science.gov (United States)

    Leckie, Donald G.; Walsworth, Nicholas; Gougeon, François A.

    2016-04-01

    In order to fully realize the benefits of automated individual tree mapping for tree species, health, forest inventory attribution and forest management decision making, the tree delineations should be as good as possible. The concept of identifying poorly delineated tree crowns and suggesting likely types of remediation was investigated. Delineations (isolations or isols) were classified into shape types reflecting whether they were realistic tree shapes and the likely kind of remediation needed. Shape type was classified by an evidence based rules approach using primitives based on isol size, shape indices, morphology, the presence of local maxima, and matches with template models representing trees of different sizes. A test set containing 50,000 isols based on an automated tree delineation of 40 cm multispectral airborne imagery of a diverse temperate-boreal forest site was used. Isolations representing single trees or several trees were the focus, as opposed to cases where a tree is split into several isols. For eight shape classes from regular through to convolute, shape classification accuracy was in the order of 62%; simplifying to six classes accuracy was 83%. Shape type did give an indication of the type of remediation and there were 6% false alarms (i.e., isols classed as needing remediation but did not). Alternately, there were 5% omissions (i.e., isols of regular shape and not earmarked for remediation that did need remediation). The usefulness of the concept of identifying poor delineations in need of remediation was demonstrated and one suite of methods developed and shown to be effective.

  4. A semiautomatic CT-based ensemble segmentation of lung tumors: comparison with oncologists’ delineations and with the surgical specimen

    Science.gov (United States)

    Velazquez, Emmanuel Rios; Aerts, Hugo J. W. L.; Gu, Yuhua; Goldgof, Dmitry B.; De Ruysscher, Dirk; Dekker, Andre; Korn, René; Gillies, Robert J.; Lambin, Philippe

    2013-01-01

    Purpose To assess the clinical relevance of a semiautomatic CT-based ensemble segmentation method, by comparing it to pathology and to CT/PET manual delineations by five independent radiation oncologists in non-small cell lung cancer (NSCLC). Materials and Methods For twenty NSCLC patients (stage Ib – IIIb) the primary tumor was delineated manually on CT/PET scans by five independent radiation oncologists and segmented using a CT based semi-automatic tool. Tumor volume and overlap fractions between manual and semiautomatic-segmented volumes were compared. All measurements were correlated with the maximal diameter on macroscopic examination of the surgical specimen. Imaging data is available on www.cancerdata.org. Results High overlap fractions were observed between the semi-automatically segmented volumes and the intersection (92.5 ± 9.0, mean ± SD) and union (94.2 ± 6.8) of the manual delineations. No statistically significant differences in tumor volume were observed between the semiautomatic segmentation (71.4 ± 83.2 cm3, mean ± SD) and manual delineations (81.9 ± 94.1 cm3; p = 0.57). The maximal tumor diameter of the semiautomatic-segmented tumor correlated strongly with the macroscopic diameter of the primary tumor (r = 0.96). Conclusion Semiautomatic segmentation of the primary tumor on CT demonstrated high agreement with CT/PET manual delineations and strongly correlated with the macroscopic diameter considered the “gold standard”. This method may be used routinely in clinical practice and could be employed as a starting point for treatment planning, target definition in multi-center clinical trials or for high throughput data mining research. This method is particularly suitable for peripherally located tumors. PMID:23157978

  5. Individual object delineation revising cadastral boundaries by means of VHSR data

    Science.gov (United States)

    Lang, Stefan; Tiede, Dirk; Schumacher, Jens; Hölbling, Daniel

    2007-10-01

    A rapidly increasing demand for accurate and updated geo-spatial information requires advanced techniques for extracting and providing relevant information. The presented work was carried out in a 3654 km2 sized area in the region of Stuttgart/Germany, characterized by high dynamic growth and steady economic development. The project Biotope Information and Management System (BIMS) provides and monitors aggregated spatial units relevant for regional planning tasks. We discuss experiences from the first phase of the project, in which we developed an adaptive per-parcel approach for delineating elementary units using SPOT-5 MS data (5 m GSD). The target geometry was pre-defined by digital cadastre data from 2005, but not all existing boundaries were retained: some were dismissed, others introduced. We followed a threefold strategy: (1) a parcel with internal homogeneity remains the same; (2) neighboring parcels with similar spectral behavior are merged; (3) a single, heterogeneous parcel is split and new boundaries are generated. By this, the initial number of units dropped to one fourth. The majority of the units were merged due to trans-boundary homogeneity, one fourth was subdivided. Assets of this approach are its cost-efficiency, the high matching degree of the produced geometry and the transferability to similar cases because of the standardized character of the data sets involved.

  6. Automated vs manual delineations of regions of interest- a comparison in commercially available perfusion MRI software

    Directory of Open Access Journals (Sweden)

    Galinovic Ivana

    2012-07-01

    Full Text Available Abstract Background In perfusion magnetic resonance imaging a manual approach to delineation of regions of interest is, due to rater bias and time intensive operator input, clinically less favorable than an automated approach would be. The goal of our study was to compare the performances of these approaches. Methods Using Stroketool, PMA and Perfscape/Neuroscape perfusion maps of cerebral blood flow, mean transit time and Tmax were created for 145 patients with acute ischemic stroke. Volumes of hypoperfused tissue were calculated using both a manual and an automated protocol, and the results compared between methods. Results The median difference between the automatically and manually derived volumes was up to 210 ml in Perfscape/Neuroscape, 123 ml in PMA and 135 ml in Stroketool. Correlation coefficients between perfusion volumes and radiological and clinical outcome were much lower for the automatic volumes than for the manually derived ones. Conclusions The agreement of the two methods was very poor, with the automated use producing falsely exaggerated volumes of hypoperfused tissue. Software improvements are necessary to enable highly automated protocols to credibly assess perfusion deficits.

  7. Delineation and Scale Effect of Precision Agriculture Management Zones Using Yield Monitor Data Over Four Years

    Institute of Scientific and Technical Information of China (English)

    LI Xiang; PAN Yu-chun; GE Zhong-qiang; ZHAO Chun-jiang

    2007-01-01

    In this study, precision agriculture management zones were delineated using yield data over four years from the combine harvester equipped with yield monitor and DGPS receiver. Relative yields measured during each year were interpolated to 4 m2 grid size using ordinary kriging. The resultant interpolated yield maps were averaged across years to create a map of the mean relative yield, which was then used for cluster analysis. The mean yield map of post-classification was processed by applying majority filtering with window sizes that were equivalent to the grid sizes of 12, 20, 28, 36, 44, 52 and 60 m. The scale effect of management zones was evaluated using relative variance reduction, test of significant differences of the means of yield zones, spatial fragmentation, and spatial agreement. The results showed that the post-classification majority filtering (PCMF) eliminated lots of isolated cells or patches caused by random variation while preserving yield means, high variance reduction, general yield patterns, and high spatial agreement. The zoned result can be used as yield goal map for preplant or in-season fertilizer recommendation in precision agriculture.

  8. Predictive occurrence models for coastal wetland plant communities: delineating hydrologic response surfaces with multinomial logistic regression

    Science.gov (United States)

    Snedden, Gregg A.; Steyer, Gregory D.

    2013-01-01

    Understanding plant community zonation along estuarine stress gradients is critical for effective conservation and restoration of coastal wetland ecosystems. We related the presence of plant community types to estuarine hydrology at 173 sites across coastal Louisiana. Percent relative cover by species was assessed at each site near the end of the growing season in 2008, and hourly water level and salinity were recorded at each site Oct 2007–Sep 2008. Nine plant community types were delineated with k-means clustering, and indicator species were identified for each of the community types with indicator species analysis. An inverse relation between salinity and species diversity was observed. Canonical correspondence analysis (CCA) effectively segregated the sites across ordination space by community type, and indicated that salinity and tidal amplitude were both important drivers of vegetation composition. Multinomial logistic regression (MLR) and Akaike's Information Criterion (AIC) were used to predict the probability of occurrence of the nine vegetation communities as a function of salinity and tidal amplitude, and probability surfaces obtained from the MLR model corroborated the CCA results. The weighted kappa statistic, calculated from the confusion matrix of predicted versus actual community types, was 0.7 and indicated good agreement between observed community types and model predictions. Our results suggest that models based on a few key hydrologic variables can be valuable tools for predicting vegetation community development when restoring and managing coastal wetlands.

  9. Geomorphic classifiers for flood-prone areas delineation for data-scarce environments

    Science.gov (United States)

    Samela, Caterina; Troy, Tara J.; Manfreda, Salvatore

    2017-04-01

    Knowing the location and the extent of the areas exposed to flood hazards is essential to any strategy for minimizing the risk. Unfortunately, in ungauged basins the use of traditional floodplain mapping techniques is prevented by the lack of the extensive data required. The present work aims to overcome this limitation by defining an alternative simplified procedure for a preliminary floodplain delineation based on the use of geomorphic classifiers. To validate the method in a data-rich environment, eleven flood-related morphological descriptors derived from remotely sensed elevation data have been used as linear binary classifiers over the Ohio River basin and its sub-catchments. Their performances have been measured at the change of the topography and the size of the calibration area, allowing to explore the transferability of the calibrated parameters, and to define the minimum extent of the calibration area. The best performing classifiers among those analysed have been applied and validated across the continental U.S. The results suggest that the classifier based on the Geomorphic Flood Index (GFI), is the most suitable to detect the flood-prone areas in data-scarce regions and for large-scale applications, providing good accuracies with low requirements in terms of data and computational costs. This index is defined as the logarithm of the ratio between the water depth in the element of the river network closest to the point under exam (estimated using a hydraulic scaling function based on contributing area) and the elevation difference between these two points.

  10. Methane oxidation in a crude oil contaminated aquifer: Delineation of aerobic reactions at the plume fringes

    Science.gov (United States)

    Amos, R.T.; Bekins, B.A.; Delin, G.N.; Cozzarelli, I.M.; Blowes, D.W.; Kirshtein, J.D.

    2011-01-01

    High resolution direct-push profiling over short vertical distances was used to investigate CH4 attenuation in a petroleum contaminated aquifer near Bemidji, Minnesota. The contaminant plume was delineated using dissolved gases, redox sensitive components, major ions, carbon isotope ratios in CH4 and CO2, and the presence of methanotrophic bacteria. Sharp redox gradients were observed near the water table. Shifts in ??13CCH4 from an average of - 57.6??? (?? 1.7???) in the methanogenic zone to - 39.6??? (?? 8.7???) at 105 m downgradient, strongly suggest CH4 attenuation through microbially mediated degradation. In the downgradient zone the aerobic/anaerobic transition is up to 0.5 m below the water table suggesting that transport of O2 across the water table is leading to aerobic degradation of CH4 at this interface. Dissolved N2 concentrations that exceeded those expected for water in equilibrium with the atmosphere indicated bubble entrapment followed by preferential stripping of O2 through aerobic degradation of CH4 or other hydrocarbons. Multivariate and cluster analysis were used to distinguish between areas of significant bubble entrapment and areas where other processes such as the infiltration of O 2 rich recharge water were important O2 transport mechanisms. ?? 2011 Elsevier B.V. All rights reserved.

  11. Delineation of downstream signalling components during acrosome reaction mediated by heat solubilized human zona pellucida

    Directory of Open Access Journals (Sweden)

    Talwar Pankaj

    2010-01-01

    Full Text Available Abstract Background Human egg is enveloped by a glycoproteinaceous matrix, zona pellucida (ZP, responsible for binding of the human spermatozoa to the egg and induction of acrosomal exocytosis in the spermatozoon bound to ZP. In the present manuscript, attempts have been made to delineate the downstream signalling components employed by human ZP to induce acrosome reaction. Methods Heat-solubilized human ZP (SIZP was used to study the induction of acrosome reaction in capacitated human spermatozoa using tetramethylrhodamine isothiocyanate conjugated Pisum sativum agglutinin (TRITC-PSA in absence or presence of various pharmacological inhibitors. In addition, intracellular calcium ([Ca2+]i levels in sperm using Fluo-3 acetoxymethyl ester as fluorescent probe were also estimated in response to SIZP. Results SIZP induces acrosomal exocytosis in capacitated human sperm in a dose dependent manner accompanied by an increase in [Ca2+]i. Human SIZP mediated induction of acrosome reaction depends on extracellular Ca2+ and involves activation of Gi protein-coupled receptor, tyrosine kinase, protein kinases A & C and phosphoinositide 3 (PI3- kinase. In addition, T-type voltage operated calcium channels and GABA-A receptor associated chloride (Cl- channels play an important role in SIZP mediated induction of acrosome reaction. Conclusions Results described in the present study provide a comprehensive account of the various downstream signalling components associated with human ZP mediated acrosome reaction.

  12. A screening tool for delineating subregions of steady recharge within groundwater models

    Science.gov (United States)

    Dickinson, Jesse E.; Ferré, T. P. A.; Bakker, Mark; Crompton, Becky

    2014-01-01

    We have developed a screening method for simplifying groundwater models by delineating areas within the domain that can be represented using steady-state groundwater recharge. The screening method is based on an analytical solution for the damping of sinusoidal infiltration variations in homogeneous soils in the vadose zone. The damping depth is defined as the depth at which the flux variation damps to 5% of the variation at the land surface. Groundwater recharge may be considered steady where the damping depth is above the depth of the water table. The analytical solution approximates the vadose zone diffusivity as constant, and we evaluated when this approximation is reasonable. We evaluated the analytical solution through comparison of the damping depth computed by the analytic solution with the damping depth simulated by a numerical model that allows variable diffusivity. This comparison showed that the screening method conservatively identifies areas of steady recharge and is more accurate when water content and diffusivity are nearly constant. Nomograms of the damping factor (the ratio of the flux amplitude at any depth to the amplitude at the land surface) and the damping depth were constructed for clay and sand for periodic variations between 1 and 365 d and flux means and amplitudes from nearly 0 to 1 × 10−3 m d−1. We applied the screening tool to Central Valley, California, to identify areas of steady recharge. A MATLAB script was developed to compute the damping factor for any soil and any sinusoidal flux variation.

  13. A novel transferable individual tree crown delineation model based on Fishing Net Dragging and boundary classification

    Science.gov (United States)

    Liu, Tao; Im, Jungho; Quackenbush, Lindi J.

    2015-12-01

    This study provides a novel approach to individual tree crown delineation (ITCD) using airborne Light Detection and Ranging (LiDAR) data in dense natural forests using two main steps: crown boundary refinement based on a proposed Fishing Net Dragging (FiND) method, and segment merging based on boundary classification. FiND starts with approximate tree crown boundaries derived using a traditional watershed method with Gaussian filtering and refines these boundaries using an algorithm that mimics how a fisherman drags a fishing net. Random forest machine learning is then used to classify boundary segments into two classes: boundaries between trees and boundaries between branches that belong to a single tree. Three groups of LiDAR-derived features-two from the pseudo waveform generated along with crown boundaries and one from a canopy height model (CHM)-were used in the classification. The proposed ITCD approach was tested using LiDAR data collected over a mountainous region in the Adirondack Park, NY, USA. Overall accuracy of boundary classification was 82.4%. Features derived from the CHM were generally more important in the classification than the features extracted from the pseudo waveform. A comprehensive accuracy assessment scheme for ITCD was also introduced by considering both area of crown overlap and crown centroids. Accuracy assessment using this new scheme shows the proposed ITCD achieved 74% and 78% as overall accuracy, respectively, for deciduous and mixed forest.

  14. Advances toward developing a global wetland delineation method using geomorphological information

    Science.gov (United States)

    Tootchi, Ardalan; Ducharne, Agnès; Jost, Anne

    2017-04-01

    Wetland hydrology is an important player in the Earth climate system because of its feedbacks to the atmosphere and its role in methane emission. Wetlands interact with the surrounding environments and affect them considerably. To include wetlands in climate models globally, both their geographic distribution and hydrology should be known. There exists a number of global datasets that either compile national/regional maps together to generate global maps (as in GLWD) or, employ satellite imagery to identify inundated areas (e.g. GLC2000 and ESA-CCI). These datasets are mostly often in spatial discordance and, as result, wetlands are the land type with the lowest agreement (Nakaegawa, 2012). The global coverage of wetlands in these datasets ranges from 3.5% to more than 13%. In this study, in order to prepare a global wetland dataset to be employed as input to climate models, several methods are tested with the use of GIS softwares. These methods are based on TI [topographic index derived from TOPMODEL (Beven & Kirkby, 1979)] to identify potentially wet areas. They rely on global scale DEMs at different resolution (HYDRO1K at 30" 1km, to HydroSHEDS at 3" 100m), with variant forms of TI combined with climatic properties (i.e. effective rainfall and evapotranspiration rates) and soil transmissivity. The results of the presented method are in good agreement with the geographic distribution of observed wetlands, while capable of delineating very small wetlands.

  15. Delineating The Subsurface Structures Using Electrical Resistivity Sounding In Some Part Of Willeton Perth Western Australia

    Directory of Open Access Journals (Sweden)

    Okan Evans Onojasun

    2015-08-01

    Full Text Available Abstract Geophysical survey using electrical resistivity methods has been carried out within the industrial area of Willeton Perth Western Australia with the view to delineate the geoelectric characteristics of the basement complex and evaluate the groundwater potential in the area. Vertical electrical sounding with ABEM SAS 3000 Terrameter and Schlumberger electrode configuration were employed for data acquisition. Apparent resistivity values obtained from the field measurements were plotted against half current electrodes spacing on a log-log graph while a model was suggested to fit the resistivity distribution presented in the sounding. The results from the modelling were finally iterated to the lowest Root Mean Square RMS percentage error using computer software A 7 point filter derived by Guptasarma to calculate a forward model. Analysis of the results showed that the study area has fairly homogenous subsurface stratification with four distinct subsurface layers above the depth of 37m. The four subsurface layers comprises top soil mainly of unconsolidated and sand containing organic matter unsaturated sand layer with consolidated and highly resistive water saturated sand layer with highly water saturated soil and the sub-stratum layer consisting of clay material. The aquifer performance is best at about 32m hence it is suggested that boreholes for sustainable water supply in this area should be drilled to about 32 m to hit prolific aquifer.

  16. Delineating diseases by IMS-MS profiling of serum N-linked glycans.

    Science.gov (United States)

    Isailovic, Dragan; Plasencia, Manolo D; Gaye, Maissa M; Stokes, Sarah T; Kurulugama, Ruwan T; Pungpapong, Vitara; Zhang, Min; Kyselova, Zuzana; Goldman, Radoslav; Mechref, Yehia; Novotny, Milos V; Clemmer, David E

    2012-02-01

    Altered branching and aberrant expression of N-linked glycans is known to be associated with disease states such as cancer. However, the complexity of determining such variations hinders the development of specific glycomic approaches for assessing disease states. Here, we examine a combination of ion mobility spectrometry (IMS) and mass spectrometry (MS) measurements, with principal component analysis (PCA) for characterizing serum N-linked glycans from 81 individuals: 28 with cirrhosis of the liver, 25 with liver cancer, and 28 apparently healthy. Supervised PCA of combined ion-mobility profiles for several, to as many as 10 different mass-to-charge ratios for glycan ions, improves the delineation of diseased states. This extends an earlier study [J. Proteome Res.2008, 7, 1109-1117] of isomers associated with a single glycan (S(1)H(5)N(4)) in which PCA analysis of the IMS profiles appeared to differentiate the liver cancer group from the other samples. Although performed on a limited number of test subjects, the combination of IMS-MS for different combinations of ions and multivariate PCA analysis shows promise for characterizing disease states.

  17. Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast

    Science.gov (United States)

    Bell, L. R.; Dowling, J. A.; Pogson, E. M.; Metcalfe, P.; Holloway, L.

    2017-01-01

    Accurate, efficient auto-segmentation methods are essential for the clinical efficacy of adaptive radiotherapy delivered with highly conformal techniques. Current atlas based auto-segmentation techniques are adequate in this respect, however fail to account for inter-observer variation. An atlas-based segmentation method that incorporates inter-observer variation is proposed. This method is validated for a whole breast radiotherapy cohort containing 28 CT datasets with CTVs delineated by eight observers. To optimise atlas accuracy, the cohort was divided into categories by mean body mass index and laterality, with atlas’ generated for each in a leave-one-out approach. Observer CTVs were merged and thresholded to generate an auto-segmentation model representing both inter-observer and inter-patient differences. For each category, the atlas was registered to the left-out dataset to enable propagation of the auto-segmentation from atlas space. Auto-segmentation time was recorded. The segmentation was compared to the gold-standard contour using the dice similarity coefficient (DSC) and mean absolute surface distance (MASD). Comparison with the smallest and largest CTV was also made. This atlas-based auto-segmentation method incorporating inter-observer variation was shown to be efficient (0.7, MASD <9.3mm) between the auto-segmented contours and CTV volumes.

  18. Geoelectric resistivity sounding for delineating salt water intrusion in the Abu Zenima area, west Sinai, Egypt

    Science.gov (United States)

    Khalil, Mohamed H.

    2006-09-01

    A direct current (dc) resistivity geoelectric technique is applied in the Abu Zenima area, West Sinai, Egypt to delineate salt water intrusion from the Gulf of Suez and evaluate the quality and some of the petrophysical parameters of the aquifer. Sixteen Schlumberger vertical electrical soundings (VES) with maximum AB/2 = 3000 m are conducted. The interpretation of the one-dimensional (1D) inversion of the acquired resistivity data could map the fresh to slightly brackish aquifer (true resistivity = 52-71 Ω m, thickness = 17-66 m), which floats on denser, more saline, deeper water (<5 Ω m). A number of water samples of the fresh aquifer are analysed to determine the total dissolved solids (TDS) concentrations (ppm). A good agreement is observed between the resistivity boundaries and the borehole data. The mutual relations between the aquifer layering, the direction of the groundwater flow and the hydrogeophysical conditions of the aquifer are investigated. The geoelectric (Dar-Zarrouk) parameters are determined and interpreted in terms of the hydraulic conductivity, transimissivity, clay content, grain size distribution and potentiality of the aquifer. The integration of the results indicates a high potentiality and a relatively good quality of the fresh to slightly brackish aquifer in the north-eastern part of the study area.

  19. MRI micturating urethrography for improved urethral delineation in prostate radiotherapy planning: a case study

    Science.gov (United States)

    Rai, Robba; Sidhom, Mark; Lim, Karen; Ohanessian, Lucy; Liney, Gary P.

    2017-04-01

    Stereotactic ablative body radiotherapy is used in prostate cancer to deliver a high dose of radiation to the tumour over a small number of treatments. This involves the simulation of the patient using both CT and MRI. Current practice is to insert an indwelling catheter (IDC) during CT to assist with visualisation of the urethra and subsequently minimise dose to this highly critical structure. However, this procedure is invasive and has an associated risk of infection. This is a case study, which demonstrates our initial experience of using a real-time non-invasive MRI technique to replace the use of IDC for prostate cancer patients. The patient was scanned on a dedicated 3T MRI and was instructed to micturate in their own time whereupon a sagittal T2 weighted HASTE sequence was acquired every 5 s. This was subsequently followed by T2 weighted axial imaging at the level of mid prostate to provide improved urethral definition. Acquired images showed bladder voidance in real-time and an increase in signal intensity in the proximal urethra post voiding allowing for delineation of the urethra. The dimension and shape of the proximal urethra was well visualised and accumulation time of urine in the urethra was sufficient to enable optimum timing of the scanning technique. We have presented for the first time a micturating urethography technique using MRI, which has allowed us to visualise the urethra without contrast and with minimal invasiveness to the patient.

  20. Delineation of potential deep seated landslides in a watershed using environmental index

    Science.gov (United States)

    Lai, Siao Ying; Lin, Chao Yuan; Lin, Cheng Yu

    2016-04-01

    The extreme rainfall induced deep seated landslides cause more attentions recently. Extreme rainfall can accelerate soil moisture content and surface runoff in slopeland which usually results in severe headward erosion and slope failures in an upstream watershed. It's a crucial issue for disaster prevention to extract the sites of potential deep seated landslide dynamically. Landslide risk and scale in a watershed were well discussed in this study. Risk of landslide occurrence in a watershed can be calculated from the multiplication of hazard and vulnerability for a certain event. A synthesis indicator derived from the indices of inverted extreme rainfall, road development and inverted normalized difference vegetation index can be effectively used as vulnerability for a watershed before the event. Landslide scale estimated from the indices of soil depth, headward erosion, river concave and dip slope could be applied to locate the hotspots of deep seated landslide in a watershed. The events of Typhoon Morakot in 2009 and Soudelor in 2015 were also selected in this study to verify the delineation accuracy of the model for the references of related authorities.

  1. Hyperspectral Imaging for Cancer Surgical Margin Delineation: Registration of Hyperspectral and Histological Images.

    Science.gov (United States)

    Lu, Guolan; Halig, Luma; Wang, Dongsheng; Chen, Zhuo Georgia; Fei, Baowei

    2014-03-12

    The determination of tumor margins during surgical resection remains a challenging task. A complete removal of malignant tissue and conservation of healthy tissue is important for the preservation of organ function, patient satisfaction, and quality of life. Visual inspection and palpation is not sufficient for discriminating between malignant and normal tissue types. Hyperspectral imaging (HSI) technology has the potential to noninvasively delineate surgical tumor margin and can be used as an intra-operative visual aid tool. Since histological images provide the ground truth of cancer margins, it is necessary to warp the cancer regions in ex vivo histological images back to in vivo hyperspectral images in order to validate the tumor margins detected by HSI and to optimize the imaging parameters. In this paper, principal component analysis (PCA) is utilized to extract the principle component bands of the HSI images, which is then used to register HSI images with the corresponding histological image. Affine registration is chosen to model the global transformation. A B-spline free form deformation (FFD) method is used to model the local non-rigid deformation. Registration experiment was performed on animal hyperspectral and histological images. Experimental results from animals demonstrated the feasibility of the hyperspectral imaging method for cancer margin detection.

  2. Night eating syndrome in young adults: delineation from other eating disorders and clinical significance.

    Science.gov (United States)

    Fischer, Sophia; Meyer, Andrea H; Hermann, Ernst; Tuch, Alex; Munsch, Simone

    2012-12-30

    The Night Eating Syndrome (NES) is a recently described disordered eating style whose status in current diagnostic systems needs to be further clarified. The aim of this study was to increase knowledge about the clinical features of NES in a sample of 1514 young adults aged 18-26 years from the general population who participated in an anonymous Internet survey. We first examined characteristics of NES and tried to delineate it from healthy controls as well as from other eating disorders in terms of socio-demography, eating disorder pathology and general psychopathology. Second, we attempted to further clarify the clinical utility of the NES by assessing the degree of distress as well as impairment. Twenty (1.3%) participants with NES were identified and there was only modest overlap between NES and both Binge Eating Disorder (BED) and Bulimia nervosa (BN) according to questionnaire-based DSM-IV criteria. Compared to healthy controls, NES individuals reported more pronounced eating disorder pathology as well as general psychopathology (depressive symptoms, chronic social stress). NES seems to be associated with considerable distress and impairment. Implications for the validity and classification of NES are discussed. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  3. A Parametric Study Delineating Irreversible Electroporation from Thermal Damage Based on a Minimally Invasive Intracranial Procedure

    Directory of Open Access Journals (Sweden)

    Ellis Thomas L

    2011-04-01

    Full Text Available Abstract Background Irreversible electroporation (IRE is a new minimally invasive technique to kill undesirable tissue in a non-thermal manner. In order to maximize the benefits from an IRE procedure, the pulse parameters and electrode configuration must be optimized to achieve complete coverage of the targeted tissue while preventing thermal damage due to excessive Joule heating. Methods We developed numerical simulations of typical protocols based on a previously published computed tomographic (CT guided in vivo procedure. These models were adapted to assess the effects of temperature, electroporation, pulse duration, and repetition rate on the volumes of tissue undergoing IRE alone or in superposition with thermal damage. Results Nine different combinations of voltage and pulse frequency were investigated, five of which resulted in IRE alone while four produced IRE in superposition with thermal damage. Conclusions The parametric study evaluated the influence of pulse frequency and applied voltage on treatment volumes, and refined a proposed method to delineate IRE from thermal damage. We confirm that determining an IRE treatment protocol requires incorporating all the physical effects of electroporation, and that these effects may have significant implications in treatment planning and outcome assessment. The goal of the manuscript is to provide the reader with the numerical methods to assess multiple-pulse electroporation treatment protocols in order to isolate IRE from thermal damage and capitalize on the benefits of a non-thermal mode of tissue ablation.

  4. Delineation of estuarine management areas using multivariate geostatistics: the case of Sado Estuary.

    Science.gov (United States)

    Caeiro, Sandra; Goovaerts, Pierre; Painho, Marco; Costa, M Helena

    2003-09-15

    The Sado Estuary is a coastal zone located in the south of Portugal where conflicts between conservation and development exist because of its location near industrialized urban zones and its designation as a natural reserve. The aim of this paper is to evaluate a set of multivariate geostatistical approaches to delineate spatially contiguous regions of sediment structure for Sado Estuary. These areas will be the supporting infrastructure of an environmental management system for this estuary. The boundaries of each homogeneous area were derived from three sediment characterization attributes through three different approaches: (1) cluster analysis of dissimilarity matrix function of geographical separation followed by indicator kriging of the cluster data, (2) discriminant analysis of kriged values of the three sediment attributes, and (3) a combination of methods 1 and 2. Final maximum likelihood classification was integrated into a geographical information system. All methods generated fairly spatially contiguous management areas that reproduce well the environment of the estuary. Map comparison techniques based on kappa statistics showed thatthe resultant three maps are similar, supporting the choice of any of the methods as appropriate for management of the Sado Estuary. However, the results of method 1 seem to be in better agreement with estuary behavior, assessment of contamination sources, and previous work conducted at this site.

  5. Delineating effects of tensor force on the density dependence of nuclear symmetry energy

    CERN Document Server

    Xu, Chang; Li, Bao-An

    2012-01-01

    In this talk, we report results of our recent studies to delineate effects of the tensor force on the density dependence of nuclear symmetry energy within phenomenological models. The tensor force active in the isosinglet neutron-proton interaction channel leads to appreciable depletion/population of nucleons below/above the Fermi surface in the single-nucleon momentum distribution in cold symmetric nuclear matter (SNM). We found that as a consequence of the high momentum tail in SNM the kinetic part of the symmetry energy $E^{kin}_{sym}(\\rho)$ is significantly below the well-known Fermi gas model prediction of approximately $12.5 (\\rho/\\rho_0)^{2/3}$. With about 15% nucleons in the high momentum tail as indicated by the recent experiments at J-Lab by the CLAS Collaboration, the $E^{kin}_{sym}(\\rho)$ is negligibly small. It even becomes negative when more nucleons are in the high momentum tail in SNM. These features have recently been confirmed by three independent studies based on the state-of-the-art micros...

  6. Delineating the decadal expansion of Lake Basaka (Ethiopia) using various image interpretation techniques

    Science.gov (United States)

    Olumana Dinka, Megersa

    2017-01-01

    Lake Basaka is expanding at a significant rate. Before the establishment of Matahara Sugar Plantation, the lake was like a small surface pond created during rainy season and used as grazing area. The lake expansion has certain negative consequences to the region. Thus, appropriate method of quantification of the Lake expansion is extremely important. In this particular study, the areal expansion of the Lake Basaka and sugarcane plantation was analysed. Four LandSat images (1973, 1986, 2000 and 2008) were taken for the cloud-free period and processed in ERDAS Imagine and ArcGIS softwares. Three techniques were employed in the delineation of the areas of the lake and plantation: visual interpretation of FCC in GIS, enhancements and advanced classification in ERDAS Imagine. The study result shows that Lake Basaka expansion is very significant and the increment is geometric rather than linear. Overall, the finding indicates that visual image interpretation gives a fast and accurate indication of the Lake Basaka expansion compared to image enhancement and classification techniques.

  7. Delineating Rearrangements in Single Yeast Artificial Chromosomes by Quantitative DNA Fiber Mapping

    Energy Technology Data Exchange (ETDEWEB)

    Weier, Heinz-Ulrich G.; Greulich-Bode, Karin M.; Wu, Jenny; Duell, Thomas

    2009-09-18

    Cloning of large chunks of human genomic DNA in recombinant systems such as yeast or bacterial artificial chromosomes has greatly facilitated the construction of physical maps, the positional cloning of disease genes or the preparation of patient-specific DNA probes for diagnostic purposes. For this process to work efficiently, the DNA cloning process and subsequent clone propagation need to maintain stable inserts that are neither deleted nor otherwise rearranged. Some regions of the human genome; however, appear to have a higher propensity than others to rearrange in any host system. Thus, techniques to detect and accurately characterize such rearrangements need to be developed. We developed a technique termed 'Quantitative DNA Fiber Mapping (QDFM)' that allows accurate tagging of sequence elements of interest with near kilobase accuracy and optimized it for delineation of rearrangements in recombinant DNA clones. This paper demonstrates the power of this microscopic approach by investigating YAC rearrangements. In our examples, high-resolution physical maps for regions within the immunoglobulin lambda variant gene cluster were constructed for three different YAC clones carrying deletions of 95 kb and more. Rearrangements within YACs could be demonstrated unambiguously by pairwise mapping of cosmids along YAC DNA molecules. When coverage by YAC clones was not available, distances between cosmid clones were estimated by hybridization of cosmids onto DNA fibers prepared from human genomic DNA. In addition, the QDFM technology provides essential information about clone stability facilitating closure of the maps of the human genome as well as those of model organisms.

  8. Delineating the Impact of Weightlessness on Human Physiology Using Computational Models

    Science.gov (United States)

    Kassemi, Mohammad

    2015-01-01

    Microgravity environment has profound effects on several important human physiological systems. The impact of weightlessness is usually indirect as mediated by changes in the biological fluid flow and transport and alterations in the deformation and stress fields of the compliant tissues. In this context, Fluid-Structural and Fluid-Solid Interaction models provide a valuable tool in delineating the physical origins of the physiological changes so that systematic countermeasures can be devised to reduce their adverse effects. In this presentation, impact of gravity on three human physiological systems will be considered. The first case involves prediction of cardiac shape change and altered stress distributions in weightlessness. The second, presents a fluid-structural-interaction (FSI) analysis and assessment of the vestibular system and explores the reasons behind the unexpected microgravity caloric stimulation test results performed aboard the Skylab. The last case investigates renal stone development in microgravity and the possible impact of re-entry into partial gravity on the development and transport of nucleating, growing, and agglomerating renal calculi in the nephron. Finally, the need for model validation and verification and application of the FSI models to assess the effects of Artificial Gravity (AG) are also briefly discussed.

  9. Distinctive Menkes disease variant with occipital horns: Delineation of natural history and clinical phenotype

    Energy Technology Data Exchange (ETDEWEB)

    Proud, V.K.; Mussell, H.G.; Percy, A.K. [Univ. of Alabama School of Medicine, Birmingham, AL (United States)] [and others

    1996-10-02

    To delineate further the clinical spectrum of Menkes disease, an X-linked recessive disorder of copper transport, we studied 4 related males, ranging in age from 4-38 years, with a unique phenotype that combines manifestations of classical and mild Menkes disease and occipital horn syndrome (OHS). The propositus, an 18-year-old man, was evaluated following an intracerebral hemorrhage at age 15 years and was noted to have marked hypotonia, motor delay with mental retardation, bladder diverticula, failure to thrive, and diarrhea from infancy; seizures from age 3 years; and abnormal hair (pili torti) and face, cutis laxa, and multiple joint dislocations. Radiographic abnormalities included occipital exostoses, tortuous cerebral blood vessels with multiple branch occlusions, and hammer-shaped clavicles. Biochemical studies demonstrated reduced copper and ceruloplasmin levels in serum, and abnormal plasma catecholamine ratios. We reported previously the molecular defect in this family, a splice-site mutation that predicts formation of approximately 20% of the normal Menkes gene product. Here, we detail the clinical course and physical features and radiographic findings in these 4 individuals, and compare their phenotype with classical and mild Menkes and OHS. Unusual Menkes disease variants such as this may escape recognition due to anomalies that appear inconsistent with the diagnosis, particularly prolonged survival and later onset of seizures. Males with mental retardation and connective tissue abnormalities should be evaluated for biochemical evidence of defective copper transport. 28 refs., 8 figs.

  10. Cavity detection and delineation research. Part 4: Microgravimetric survey: Manatee Springs Site, Florida

    Science.gov (United States)

    Butler, D. K.; Whitten, C. B.; Smith, F. L.

    1983-03-01

    Results of a microgravimetric survey at Manatee Springs, Levy County, Fla., are presented. The survey area was 100 by 400 ft, with 20-ft gravity station spacing, and with the long dimension of the area approximately perpendicular to the known trend of the main cavity. The main cavity is about 80 to 100 ft below the surface and has a cross section about 16 to 20 ft in height and 30 to 40 ft in width beneath the survey area. Using a density contrast of -1.3 g/cucm, the gravity anomaly is calculated to be -35 micro Gal with a width at half maximum of 205 ft. The microgravimetric survey results clearly indicate a broad negative anomaly coincident with the location and trend of the cavity system across the survey area. The anomaly magnitude and width are consistent with those calculated from the known depth and dimensions of the main cavity. In addition, a small, closed negative anomaly feature, superimposed on the broad negative feature due to the main cavity, satisfactorily delineated a small secondary cavity feature which was discovered and mapped by cave divers.

  11. Canopy Fuel Load Mapping of Mediterranean Pine Sites Based on Individual Tree-Crown Delineation

    Directory of Open Access Journals (Sweden)

    Giorgos Mallinis

    2013-12-01

    Full Text Available This study presents an individual tree-crown-based approach for canopy fuel load estimation and mapping in two Mediterranean pine stands. Based on destructive sampling, an allometric equation was developed for the estimation of crown fuel weight considering only pine crown width, a tree characteristic that can be estimated from passive imagery. Two high resolution images were used originally for discriminating Aleppo and Calabrian pines crown regions through a geographic object based image analysis approach. Subsequently, the crown region images were segmented using a watershed segmentation algorithm and crown width was extracted. The overall accuracy of the tree crown isolation expressed through a perfect match between the reference and the delineated crowns was 34.00% for the Kassandra site and 48.11% for the Thessaloniki site, while the coefficient of determination between the ground measured and the satellite extracted crown width was 0.5. Canopy fuel load values estimated in the current study presented mean values from 1.29 ± 0.6 to 1.65 ± 0.7 kg/m2 similar to other conifers worldwide. Despite the modest accuracies attained in this first study of individual tree crown fuel load mapping, the combination of the allometric equations with satellite-based extracted crown width information, can contribute to the spatially explicit mapping of canopy fuel load in Mediterranean areas. These maps can be used among others in fire behavior prediction, in fuel reduction treatments prioritization and during active fire suppression.

  12. Digital panoramic radiography versus cone beam computed tomography in the delineation of maxillomandibular tumors.

    Science.gov (United States)

    Almeida-Barros, Renata Quirino de; Abilio, Vanessa Maria Freire; Yamamoto, Angela Toshie Araki; Melo, Daniela Pita de; Godoy, Gustavo Pina; Bento, Patricia Meira

    2015-01-01

    This research aimed to compare the efficacy of digital panoramic radiography (DPR) with that of cone beam computed tomography (CBCT) for delineation of odontogenic and nonodontogenic tumors. From November 2009 through March 2011, 23 tumors in the maxillomandibular complex were diagnosed by histopathological examination. All DPRs and CBCTs were obtained and analyzed by a single previously calibrated radiologist, who considered the following radiographic aspects: clarity of the lesion edges, relation with dental elements, involvement of adjacent anatomical structures, cortical bone expansion and disruption, and, if present, type of involved anatomical structures and site of bone expansion and disruption. Of 23 patients, 15 (65.2%) were male and 8 (34.8%) were female. The tumor was classified as odontogenic in 73.9% of patients and nonodontogenic in 26.1% of patients. Analysis revealed that 56.5% of the tumors were located in the mandible, 34.8% in the maxilla, and 8.7% in both arches. For all analyzed variables, CBCTs offered more accurate details than did DPRs. Panoramic radiography should not be the examination of choice to visualize lesions in the maxillomandibular complex.

  13. Application of the marine Ex-Bz transient system for delineating near shore resistive targets

    Science.gov (United States)

    Levi, Eldad; Goldman, Mark

    2017-09-01

    Under certain conditions, multidimensional coastal effect significantly enhances relative target response of the broadside transient marine Ex-Bz system. The effect is caused by a redistribution of the induced currents between the resistive target and the sea bottom compared to that existing in a 1-D geometry. As a result, the effect strongly depends on specific geoelectric conditions in the near-shore environment. The first study of the effect in the Mediterranean coast of central Israel was addressing shallow groundwater problem under specific geoelectric, hydrogeological and geomorphological conditions. Under different conditions (e.g. deep targets and sharp near-shore bathymetry), the influence of the effect on target response might be significantly different. More general analysis carried out in this study comprises various geoelectric scenarios that include both shallow and deep resistive targets at different distances from the shore line as well as various geometries of the target and the near-shore bathymetry. The study includes three major exploration aspects of the system, namely signal detectability, lateral and vertical resolution. Taking into account poor lateral resolution of the classical frequency domain CSEM and the limited application in shallow sea, the described broadside transient Ex-Bz system might represent a desired alternative for delineating shallow and deep resistive targets in transition zone.

  14. Seasonally-managed wetland footprint delineation using Landsat ETM+ satellite imagery

    Energy Technology Data Exchange (ETDEWEB)

    Quinn, Nigel W. T. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Epshtein, Olga [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Arizona State Univ., Tempe, AZ (United States). School of Sustainable Engineering and the Built Environment

    2014-01-09

    One major challenge in water resource management is the estimation of evapotranspiration losses from seasonally managed wetlands. Quantifying these losses is complicated by the dynamic nature of the wetlands' areal footprint during the periods of flood-up and drawdown. In this paper, we present a data-lean solution to this problem using an example application in the San Joaquin Basin, California. Through analysis of high-resolution Landsat Enhanced Thematic Mapper Plus (ETM+) satellite imagery, we develop a metric to better capture the extent of total flooded wetland area. The procedure is validated using year-long, continuously-logged field datasets for two wetlands within the study area. The proposed classification which uses a Landsat ETM + Band 5 (mid-IR wavelength) to Band 2 (visible green wavelength) ratio improves estimates by 30–50% relative to previous wetland delineation studies. Finally, requiring modest ancillary data, the study results provide a practical and efficient option for wetland management in data-sparse regions or un-gauged watersheds.

  15. ORIXÁS Dances and Physical Education: Delineating perspectives starting from the rituals of CANDOMBLÉ

    Directory of Open Access Journals (Sweden)

    Larissa Michelle Lara

    2008-06-01

    Full Text Available The aim of this study is to configure dance scenes in candomblé yards seeking out ways to convert ritual practices into educational models. Using bibliographical and field research, and case experience report, it was possible to understand the dance and its mythical sense, as well as the sacred gesture of being in motion. Based on the observations made at candomblé yards at the city of Campinas, the theoretical references, as well as the experience obtained by the students of the undergraduate course in Physical Education at Unicamp, it was possible to delineate work perspectives of orixás dances in the educational field. We verified that the gestural, mythological and cultural riches of these dances may be used in Physical Education classes by starting with generating themes and using camdomblé yards as an important research laboratory. Working with orixás dances would represent a form of materializing new visualizations of cultural manifestations still considered as inferior, and contribute to a decrease in prejudices seen in the academy and increase the relationship between university and society.

  16. Gender-Related Risk and Protective Factors for Depressive Symptoms and Disordered Eating in Adolescence: A 4-Year Longitudinal Study

    Science.gov (United States)

    Ferreiro, Fatima; Seoane, Gloria; Senra, Carmen

    2012-01-01

    The interplay between intrapersonal risk (low self-esteem, perfectionism and body dissatisfaction) and interpersonal protection (social support) appears relevant for delineating gender-specific pathways that lead to both depressive and eating psychopathology. The aims of this longitudinal study were to examine gender differences in the levels of…

  17. Robust, fully automatic delineation of the head contour by stereotactical normalization for attenuation correction according to Chang in dopamine transporter scintigraphy

    Energy Technology Data Exchange (ETDEWEB)

    Lange, Catharina; Brenner, Winfried; Buchert, Ralph [Charite - Universitaetsmedizin Berlin, Department of Nuclear Medicine, Berlin (Germany); Kurth, Jens; Schwarzenboeck, Sarah; Krause, Bernd J. [Universitaetsmedizin Rostock, Department of Nuclear Medicine, Rostock (Germany); Seese, Anita; Steinhoff, Karen; Sabri, Osama; Hesse, Swen [Universitaetsklinikum Leipzig, Department of Nuclear Medicine, Leipzig (Germany); Umland-Seidler, Bert [GE Healthcare Buchler GmbH and Co. KG, Munich (Germany)

    2015-09-15

    Chang's method, the most widely used attenuation correction (AC) in brain single-photon emission computed tomography (SPECT), requires delineation of the outer contour of the head. Manual and automatic threshold-based methods are prone to errors due to variability of tracer uptake in the scalp. The present study proposes a new method for fully automated delineation of the head based on stereotactical normalization. The method was validated for SPECT with I-123-ioflupane. The new method was compared to threshold-based delineation in 62 unselected patients who had received I-123-ioflupane SPECT at one of 3 centres. The impact on diagnostic power was tested for semi-quantitative analysis and visual reading of the SPECT images (six independent readers). The two delineation methods produced highly consistent semi-quantitative results. This was confirmed by receiver operating characteristic analyses in which the putamen specific-to-background ratio achieved highest area under the curve with negligible effect of the delineation method: 0.935 versus 0.938 for stereotactical normalization and threshold-based delineation, respectively. Visual interpretation of DVR images was also not affected by the delineation method. Delineation of the head contour by stereotactical normalization appears useful for Chang AC in I-123-ioflupane SPECT. It is robust and does not require user interaction. (orig.)

  18. Influence of experience and qualification on PET-based target volume delineation. When there is no expert--ask your colleague

    DEFF Research Database (Denmark)

    Doll, C; Duncker-Rohr, V; Rücker, G;

    2014-01-01

    BACKGROUND AND PURPOSE: The integration of positron emission tomography (PET) information for target volume delineation in radiation treatment planning is routine in many centers. In contrast to automatic contouring, research on visual-manual delineation is scarce. The present study investigates ...

  19. Interobserver variability in gross tumor volume delineation for hepatocellular carcinoma. Results of Korean Radiation Oncology Group 1207 study

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Young Suk [Jeju National University School of Medicine, Department of Radiation Oncology, Jeju National University Hospital, Jeju (Korea, Republic of); Kim, Jun Won; Lee, Ik Jae [Yonsei University College of Medicine, Department of Radiation Oncology, Gangnam Severance Hospital, Seoul (Korea, Republic of); Yoon, Won Sup [Korea University Medical Center, Department of Radiation Oncology, Ansan Hospital, Ansan (Korea, Republic of); Kang, Min Kyu [Kyungpook National University School of Medicine, Department of Radiation Oncology, Daegu (Korea, Republic of); Kim, Tae Hyun [National Cancer Center, Center for Liver Cancer, Goyang (Korea, Republic of); Kim, Jin Hee [Keimyung University School of Medicine, Department of Radiation Oncology, Dongsan Medical Center, Daegu (Korea, Republic of); Lee, Hyung-Sik [Dong-A University College of Medicine, Department of Radiation Oncology, Busan (Korea, Republic of); Park, Hee Chul [Sungkyunkwan University School of Medicine, Department of Radiation Oncology, Samsung Medical Center, Seoul (Korea, Republic of); Jang, Hong Seok; Kay, Chul Seung [The Catholic University of Korea College of Medicine, Department of Radiation Oncology, Seoul (Korea, Republic of); Yoon, Sang Min [University of Ulsan College of Medicine, Department of Radiation Oncology, Asan Medical Center, Seoul (Korea, Republic of); Kim, Mi-Sook [Korea Institute of Radiological and Medical Sciences, Department of Radiation Oncology, Seoul (Korea, Republic of); Seong, Jinsil [Yonsei University College of Medicine, Department of Radiation Oncology, Severance Hospital, Seodaemun-gu, Seoul (Korea, Republic of)

    2016-10-15

    There has been increasing use of external beam radiotherapy for localized treatment of hepatocellular carcinoma (HCC) with both palliative and curative intent. Quality control of target delineation in primary HCC is essential to deliver adequate doses of radiation to the primary tumor while preserving adjacent healthy organs. We analyzed interobserver variability in gross tumor volume (GTV) delineation for HCC. Twelve radiation oncologists specializing in liver malignancy participated in a multi-institutional contouring dummy-run study of nine HCC cases and independently delineated GTV on the same set of provided computed tomography images. Quantitative analysis was performed using an expectation maximization algorithm for simultaneous truth and performance level estimation (STAPLE) with kappa statistics calculating agreement between physicians. To quantify the interobserver variability of GTV delineations, the ratio of the actual delineated volume to the estimated consensus volume (STAPLE), the ratio of the common and encompassing volumes, and the coefficient of variation were calculated. The median kappa agreement level was 0.71 (range 0.28-0.86). The ratio of the actual delineated volume to the estimated consensus volume ranged from 0.19 to 1.93 (median 0.94) for all cases. The ratio of the common and encompassing volumes ranged from 0.001 to 0.56 (median 0.25). The coefficient of variation for GTV delineation ranged from 8 to 57 % (median 26 %). The interobserver variability in target delineation of HCC GTV in this study is noteworthy. Multi-institution studies involving radiotherapy for HCC require appropriate quality assurance programs for target delineation. (orig.) [German] Die externe kurative Strahlentherapie ist zunehmend bei der lokalisierten Behandlung hepatozellulaerer Karzinome (HCC) in palliativer und kurativer Absicht in Gebrauch. Eine Qualitaetskontrolle der Zielabgrenzung beim primaeren HCC ist entscheidend, um die passende Dosis fuer die

  20. Delineation of submarine groundwater discharge (SGD) in a large-scaled reclaimed land

    Science.gov (United States)

    Lee, B.; Park, S.; Hwang, J.; Song, S.; Choi, J.; Nam, K.

    2010-12-01

    The Saemangeum reclaimed land in Korea is currently under construction for an eco-friendly multifunctional complex including agriculture, eco-tourism, business, and renewable energy industry. Regarding water supply for the reclaimed land, groundwater is the sustainable water resource and submarine groundwater discharge (SGD), subsurface fluids flowing from land to the sea, is considered as an alternative one. This study was conducted to identify SGD below a southeastern part of the reclaimed land and to delineate its pathway by investigating groundwater chemistry and electrical resistivity distribution of subsurface. Thirty four groundwater samples were collected from shallow agricultural wells placed along the past coast line (~5 km length) of the southeastern part in May and October, 2009. Field parameters including pH, EC, temperature, and ORP were measured using a portable multi-sensor and alkalinity by titration. They were analyzed for stable isotopes (δ18O and δ2H), cations (Na, K, Ca, Mg, Si, and NH4), anions (Cl, NO3, SO4, and PO4), and metals (Fe and Mn). Mean EC value was 1,163 µS/cm, corresponding to the appropriate crop growth because the criteria of crop yield is less 2,000 µS/cm. Stable isotopes results were plotted on the local meteoric water line, indicating lighter than those from sea water. It implied that the groundwater originated from inland precipitation and occurred as SGD along the coast line. From the groundwater compositions showing various water types including Na-HCO3, Ca-Cl, and Na-Cl, it could be concluded that small-scale SGD and seawater intrusion have great influences on the groundwater quality. From correlation analysis of EC-pH, Cl-HCO3, NO3-SO4, NO3-Cl, and (Fe, Mn)-NH4, spatial distributions of SGD were identified. A small catchment (0.2 km2) in the reclaimed land was selected to delineate a SGD flow path by two-dimensional electrical resistivity survey. The longitudinal and transverse lines were 760 and 275 m, respectively

  1. Variability of Target and Normal Structure Delineation Using Multimodality Imaging for Radiation Therapy of Pancreatic Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Dalah, Entesar; Moraru, Ion [Department of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States); Paulson, Eric [Department of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States); Department of Radiology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States); Erickson, Beth [Department of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States); Li, X. Allen, E-mail: ali@mcw.edu [Department of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin (United States)

    2014-07-01

    Purpose: To explore the potential of multimodality imaging (dynamic contrast–enhanced magnetic resonance imaging [DCE-MRI], apparent diffusion-coefficient diffusion-weighted imaging [ADC-DWI], fluorodeoxyglucose positron emission tomography [FDG-PET], and computed tomography) to define the gross tumor volume (GTV) and organs at risk in radiation therapy planning for pancreatic cancer. Delineated volumetric changes of DCE-MRI, ADC-DWI, and FDG-PET were assessed in comparison with the finding on 3-dimensional/4-dimensional CT with and without intravenous contrast, and with pathology specimens for resectable and borderline resectable cases of pancreatic cancer. Methods and Materials: We studied a total of 19 representative patients, whose DCE-MRI, ADC-DWI, and FDG-PET data were reviewed. Gross tumor volume and tumor burden/active region inside pancreatic head/neck or body were delineated on MRI (denoted GTV{sub DCE}, and GTV{sub ADC}), a standardized uptake value (SUV) of 2.5, 40%SUVmax, and 50%SUVmax on FDG-PET (GTV2.5, GTV{sub 40%}, and GTV{sub 50%}). Volumes of the pancreas, duodenum, stomach, liver, and kidneys were contoured according to CT (V{sub CT}), T1-weighted MRI (V{sub T1}), and T2-weighted MRI (V{sub T2}) for 7 patients. Results: Significant statistical differences were found between the GTVs from DCE-MRI, ADC-DW, and FDG-PET, with a mean and range of 4.73 (1.00-9.79), 14.52 (3.21-25.49), 22.04 (1.00-45.69), 19.10 (4.84-45.59), and 9.80 (0.32-35.21) cm{sup 3} for GTV{sub DCE}, GTV{sub ADC}, GTV2.5, GTV{sub 40%}, and GTV{sub 50%}, respectively. The mean difference and range in the measurements of maximum dimension of tumor on DCE-MRI, ADC-DW, SUV2.5, 40%SUVmax, and 50%SUVmax compared with pathologic specimens were −0.84 (−2.24 to 0.9), 0.41 (−0.15 to 2.3), 0.58 (−1.41 to 3.69), 0.66 (−0.67 to 1.32), and 0.15 (−1.53 to 2.38) cm, respectively. The T1- and T2-based volumes for pancreas, duodenum, stomach, and liver were generally smaller

  2. A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment

    Science.gov (United States)

    2010-01-01

    Background Technological advances have lead to the rapid increase in availability of single nucleotide polymorphisms (SNPs) in a range of organisms, and there is a general optimism that SNPs will become the marker of choice for a range of evolutionary applications. Here, comparisons between 300 polymorphic SNPs and 14 short tandem repeats (STRs) were conducted on a data set consisting of approximately 500 Atlantic salmon arranged in 10 samples/populations. Results Global FST ranged from 0.033-0.115 and -0.002-0.316 for the 14 STR and 300 SNP loci respectively. Global FST was similar among 28 linkage groups when averaging data from mapped SNPs. With the exception of selecting a panel of SNPs taking the locus displaying the highest global FST for each of the 28 linkage groups, which inflated estimation of genetic differentiation among the samples, inferred genetic relationships were highly similar between SNP and STR data sets and variants thereof. The best 15 SNPs (30 alleles) gave a similar level of self-assignment to the best 4 STR loci (83 alleles), however, addition of further STR loci did not lead to a notable increase assignment whereas addition of up to 100 SNP loci increased assignment. Conclusion Whilst the optimal combinations of SNPs identified in this study are linked to the samples from which they were selected, this study demonstrates that identification of highly informative SNP loci from larger panels will provide researchers with a powerful approach to delineate genetic relationships at the individual and population levels. PMID:20051144

  3. Delineating ground water recharge from leaking irrigation canals using water chemistry and isotopes.

    Science.gov (United States)

    Harvey, F E; Sibray, S S

    2001-01-01

    Across the Great Plains irrigation canals are used to transport water to cropland. Many of these canals are unlined, and leakage from them has been the focus of an ongoing legal, economic, and philosophical debate as to whether this lost water should be considered waste or be viewed as a beneficial and reasonable use since it contributes to regional ground water recharge. While historically there has been much speculation about the impact of canal leakage on local ground water, actual data are scarce. This study was launched to investigate the impact of leakage from the Interstate Canal, in the western panhandle of Nebraska, on the hydrology and water quality of the local aquifer using water chemistry and environmental isotopes. Numerous monitoring wells were installed in and around a small wetland area adjacent to the canal, and ground water levels were monitored from June 1992 until January 1995. Using the water level data, the seepage loss from the canal was estimated. In addition, the canal, the monitoring wells, and several nearby stock and irrigation wells were sampled for inorganic and environmental isotope analysis to assess water quality changes, and to determine the extent of recharge resulting from canal leakage. The results of water level monitoring within study wells indicates a rise in local ground water levels occurs seasonally as a result of leakage during periods when the canal is filled. This rise redirects local ground water flow and provides water to nearby wetland ecosystems during the summer months. Chemical and isotopic results were used to delineate canal, surface, and ground water and indicate that leaking canal water recharges both the surface alluvial aquifer and upper portions of the underlying Brule Aquifer. The results of this study indicate that lining the Interstate Canal could lower ground water levels adjacent to the canal, and could adversely impact the local aquifer.

  4. Further delineation of the KAT6B molecular and phenotypic spectrum

    Science.gov (United States)

    Gannon, Tamsin; Perveen, Rahat; Schlecht, Hélene; Ramsden, Simon; Anderson, Beverley; Kerr, Bronwyn; Day, Ruth; Banka, Siddharth; Suri, Mohnish; Berland, Siren; Gabbett, Michael; Ma, Alan; Lyonnet, Stan; Cormier-Daire, Valerie; Yilmaz, Rüstem; Borck, Guntram; Wieczorek, Dagmar; Anderlid, Britt-Marie; Smithson, Sarah; Vogt, Julie; Moore-Barton, Heather; Simsek-Kiper, Pelin Ozlem; Maystadt, Isabelle; Destrée, Anne; Bucher, Jessica; Angle, Brad; Mohammed, Shehla; Wakeling, Emma; Price, Sue; Singer, Amihood; Sznajer, Yves; Toutain, Annick; Haye, Damien; Newbury-Ecob, Ruth; Fradin, Melanie; McGaughran, Julie; Tuysuz, Beyhan; Tein, Mark; Bouman, Katelijne; Dabir, Tabib; Van den Ende, Jenneke; Luk, Ho Ming; Pilz, Daniela T; Eason, Jacqueline; Davies, Sally; Reardon, Willie; Garavelli, Livia; Zuffardi, Orsetta; Devriendt, Koen; Armstrong, Ruth; Johnson, Diana; Doco-Fenzy, Martine; Bijlsma, Emilia; Unger, Sheila; Veenstra-Knol, Hermine E; Kohlhase, Jürgen; Lo, Ivan FM; Smith, Janine; Clayton-Smith, Jill

    2015-01-01

    KAT6B sequence variants have been identified previously in both patients with the Say-Barber-Biesecker type of blepharophimosis mental retardation syndromes (SBBS) and in the more severe genitopatellar syndrome (GPS). We report on the findings in a previously unreported group of 57 individuals with suggestive features of SBBS or GPS. Likely causative variants have been identified in 34/57 patients and were commonly located in the terminal exons of KAT6B. Of those where parental samples could be tested, all occurred de novo. Thirty out of thirty-four had truncating variants, one had a missense variant and the remaining three had the same synonymous change predicted to affect splicing. Variants in GPS tended to occur more proximally to those in SBBS patients, and genotype/phenotype analysis demonstrated significant clinical overlap between SBBS and GPS. The de novo synonymous change seen in three patients with features of SBBS occurred more proximally in exon 16. Statistical analysis of clinical features demonstrated that KAT6B variant-positive patients were more likely to display hypotonia, feeding difficulties, long thumbs/great toes and dental, thyroid and patella abnormalities than KAT6B variant-negative patients. The few reported patients with KAT6B haploinsufficiency had a much milder phenotype, though with some features overlapping those of SBBS. We report the findings in a previously unreported patient with a deletion of the KAT6B gene to further delineate the haploinsufficiency phenotype. The molecular mechanisms giving rise to the SBBS and GPS phenotypes are discussed. PMID:25424711

  5. Delineation of ground-water contamination using soil-gas analyses near Jackson, Tennessee

    Science.gov (United States)

    Lee, R.W.

    1991-01-01

    An investigation of the ground-water resources near Jackson, West Tennessee, was conducted during 1988-89. The study included determination of the occurrence of contaminants in the shallow aquifer using soil-gas analyses in the unsaturated zone. Between 1980 and 1988, an underground fuel-storage tank leaked about 3,000 gallons of unleaded fuel to the water table about 4 feet below land surface. A survey of soil gas using a gas chromatograph equipped with a photoionization detector showed concentrations of volatile organic compounds greater than IO, 000 parts per million near the leak These compounds were detected in an area about 240 feet long and 110 feet wide extending west from the point source. The chromatograms provided two distinct 'fingerprints' of volatile organic compounds. The first revealed the presence of benzene, toluene, andxylenes, which are constituents of unleaded fuel, in addition to other volatile compounds, in soil gas in the area near the leak The second did not reveal any detectable benzene, toluene, or xylenes in the soil-gas samples, but showed the presence of other unidentified volatile organic compounds in soil gas north of the storage tank. The distribution of total concentrations of volatile organic compounds in the unsaturated zone indicated that a second plume about 200 feet long and 90 feet wide was present about 100 feet north of the storage tank The second plume could have been the result of previous activities at this site during the 1950's or earlier. Activities at the site are believed to have included storage of solvents used at the nearby railyard and flushing of tanks containing tar onto a gravel-covered parking area. The delineation of these plumes has shown that soil-gas analyses can be a useful technique for identifying areas of contamination with volatile organic compounds in shallow water-table aquifers and may have broad applications in similar situations where the water table is relatively close to the surface.

  6. Metabolites of purine nucleoside phosphorylase (NP in serum have the potential to delineate pancreatic adenocarcinoma.

    Directory of Open Access Journals (Sweden)

    Shaiju K Vareed

    Full Text Available Pancreatic Adenocarcinoma (PDAC, the fourth highest cause of cancer related deaths in the United States, has the most aggressive presentation resulting in a very short median survival time for the affected patients. Early detection of PDAC is confounded by lack of specific markers that has motivated the use of high throughput molecular approaches to delineate potential biomarkers. To pursue identification of a distinct marker, this study profiled the secretory proteome in 16 PDAC, 2 carcinoma in situ (CIS and 7 benign patients using label-free mass spectrometry coupled to 1D-SDS-PAGE and Strong Cation-Exchange Chromatography (SCX. A total of 431 proteins were detected of which 56 were found to be significantly elevated in PDAC. Included in this differential set were Parkinson disease autosomal recessive, early onset 7 (PARK 7 and Alpha Synuclein (aSyn, both of which are known to be pathognomonic to Parkinson's disease as well as metabolic enzymes like Purine Nucleoside Phosphorylase (NP which has been exploited as therapeutic target in cancers. Tissue Microarray analysis confirmed higher expression of aSyn and NP in ductal epithelia of pancreatic tumors compared to benign ducts. Furthermore, extent of both aSyn and NP staining positively correlated with tumor stage and perineural invasion while their intensity of staining correlated with the existence of metastatic lesions in the PDAC tissues. From the biomarker perspective, NP protein levels were higher in PDAC sera and furthermore serum levels of its downstream metabolites guanosine and adenosine were able to distinguish PDAC from benign in an unsupervised hierarchical classification model. Overall, this study for the first time describes elevated levels of aSyn in PDAC as well as highlights the potential of evaluating NP protein expression and levels of its downstream metabolites to develop a multiplex panel for non-invasive detection of PDAC.

  7. Regional Association Analysis of MetaQTLs Delineates Candidate Grain Size Genes in Rice

    Directory of Open Access Journals (Sweden)

    Anurag V. Daware

    2017-05-01

    Full Text Available Molecular mapping studies which aim to identify genetic basis of diverse agronomic traits are vital for marker-assisted crop improvement. Numerous Quantitative Trait Loci (QTLs mapped in rice span long genomic intervals with hundreds to thousands of genes, which limits their utilization for marker-assisted genetic enhancement of rice. Although potent, fine mapping of QTLs is challenging task as it requires screening of large number of segregants to identify suitable recombination events. Association mapping offers much higher resolution as compared to QTL mapping, but detects considerable number of spurious QTLs. Therefore, combined use of QTL and association mapping strategies can provide advantages associated with both these methods. In the current study, we utilized meta-analysis approach to identify metaQTLs associated with grain size/weight in diverse Indian indica and aromatic rice accessions. Subsequently, attempt has been made to narrow-down identified grain size/weight metaQTLs through individual SNP- as well as haplotype-based regional association analysis. The study identified six different metaQTL regions, three of which were successfully revalidated, and substantially scaled-down along with GS3 QTL interval (positive control by regional association analysis. Consequently, two potential candidate genes within two reduced metaQTLs were identified based on their differential expression profiles in different tissues/stages of rice accessions during seed development. The developed strategy has broader practical utility for rapid delineation of candidate genes and natural alleles underlying QTLs associated with complex agronomic traits in rice as well as major crop plants enriched with useful genetic and genomic information.

  8. A novel instrument to delineate varietal and harvest effects on blueberry fruit texture during storage.

    Science.gov (United States)

    Li, Changying; Luo, Jiawei; MacLean, Dan

    2011-07-01

    Firmness is an important quality index for blueberries. It is the major factor that determines consumer acceptability, storability and resistance to injury and diseases during storage and fresh marketing. Blueberry cultivars vary in their firmness, with southern highbush cultivars usually softer than Rabbiteye blueberries. In this study, varietal and harvest effects on blueberry firmness were measured by the Firmtech II and laser air-puff instruments. This was the first time that the laser air-puff, a non-contact food firmness tester, had been used for firmness testing of small fruit, such as blueberry. Two southern highbush cultivars (Sweet Crisp and Emerald) and two Rabbiteye cultivars (Vernon and Savory) were used for varietal effect measurement, while a Rabbiteye cultivar (Premier) that was both machine and hand harvested was used for harvest effect observation. Fifty berry samples per replicate and four replicates were tested by two instruments at harvest and after 7, 14, or 21 days of storage. The laser air-puff tester successfully delineated the difference in firmness due to cultivar characteristics and harvest methods, as well as the firmness loss over 21 days of postharvest cold storage (4 °C). The firmness index derived from the laser air-puff tester achieved a significant correlation with the firmness values measured by the Firmtech (R(2)=0.80). A new texture index, springiness, was developed from the laser air-puff, which largely reflects the varietal differences in elasticity of fruit. This study demonstrated the efficacy of the laser air-puff instrument for blueberry firmness measurement. This non-contact instrument not only provides an alternative method of firmness measurement, but also offers a new index for fruit elasticity evaluation and better texture evaluation for blueberries. Copyright © 2011 Society of Chemical Industry.

  9. A computational hypothesis for allostasis: delineation of substance dependence, conventional therapies, and alternative treatments

    Directory of Open Access Journals (Sweden)

    Yariv Z. Levy

    2013-12-01

    Full Text Available The allostatic theory of drug abuse describes the brain's reward system alterations as substance misuse progresses. Neural adaptations arising from the reward system itself and from the antireward system provide the subject with functional stability, while affecting the person's mood. We propose a computational hypothesis describing how a virtual subject's drug consumption, cognitive substrate, and mood interface with reward and antireward systems. Reward system adaptations are assumed interrelated with the ongoing neural activity defining behavior towards drug intake, including activity in the nucleus accumbens, ventral tegmental area, and prefrontal cortex (PFC. Antireward system adaptations are assumed to mutually connect with higher-order cognitive processes occurring within PFC, orbitofrontal cortex, and anterior cingulate cortex. The subject's mood estimation is a provisional function of reward components.The presented knowledge repository model incorporates pharmacokinetic, pharmacodynamic, neuropsychological, cognitive, and behavioral components. Patterns of tobacco smoking exemplify the framework's predictive properties: escalation of cigarette consumption, conventional treatments similar to nicotine patches, and alternative medical practices comparable to meditation. The primary outcomes include an estimate of the virtual subject's mood and the daily account of drug intakes. The main limitation of this study resides in the 21 time-dependent processes which partially describe the complex phenomena of drug addiction and involve a large number of parameters which may underconstrain the framework.Our model predicts that reward system adaptations account for mood stabilization, whereas antireward system adaptations delineate mood improvement and reduction in drug consumption. This investigation provides formal arguments encouraging current rehabilitation therapies to include meditation-like practices along with pharmaceutical drugs and

  10. Resonance Raman spectroscopic measurements delineate the structural changes that occur during tau fibril formation.

    Science.gov (United States)

    Ramachandran, Gayathri; Milán-Garcés, Erix A; Udgaonkar, Jayant B; Puranik, Mrinalini

    2014-10-21

    The aggregation of the microtubule-associated protein, tau, into amyloid fibrils is a hallmark of neurodegenerative diseases such as the tauopathies and Alzheimer's disease. Since monomeric tau is an intrinsically disordered protein and the polymeric fibrils possess an ordered cross-β core, the aggregation process is known to involve substantial conformational conversion besides growth. The aggregation mechanism of tau in the presence of inducers such as heparin, deciphered using probes such as thioflavin T/S fluorescence, light scattering, and electron microscopy assays, has been shown to conform to ligand-induced nucleation-dependent polymerization. These probes do not, however, distinguish between the processes of conformational conversion and fibril growth. In this study, UV resonance Raman spectroscopy is employed to look directly at signatures of changes in secondary structure and side-chain packing during fibril formation by the four repeat functional domain of tau in the presence of the inducer heparin, at pH 7 and at 37 °C. Changes in the positions and intensities of the amide Raman bands are shown to occur in two distinct stages during the fibril formation process. The first stage of UVRR spectral changes corresponds to the transformation of monomer into early fibrillar aggregates. The second stage corresponds to the transformation of these early fibrillar aggregates into the final, ordered, mature fibrils and during this stage; the processes of conformational conversion and the consolidation of the fibril core occur simultaneously. Delineation of these secondary structural changes accompanying the formation of tau fibrils holds significance for the understanding of generic and tau-specific principles of amyloid assembly.

  11. Delineation of right and left lobe of the liver accessed by 3-dimensional CT images

    Energy Technology Data Exchange (ETDEWEB)

    Teleuhan, Nadira [Hiroshima Univ. (Japan). Graduate School of Biomedical Sciences

    2003-02-01

    Adequate delineation of right and left liver lobes is very important especially in partial hepatectomy. We analyzed the sub-volumes of middle hepatic vein (MHV) draining area divided by the Cantlie's plane and MHV plane using CT 3-dimensional images. We examined 10 donor candidates for liver transplantation with multi-detector-row CT. Three-dimensional rendering images of the liver parenchyma and the hepatic vein were created. After identifying hepatic vein draining area, liver volume was divided into three hepatic vein-draining areas. The MHV draining area was divided by two different planes, Cant lie's plane and MHV plane, and draining volumes from right and left lobes were calculated. Total liver volume and right, middle, left hepatic vein-draining volume (ratio of total liver volume) were 1472{+-}259 ml, 708{+-}150 ml (48{+-}10%), 414{+-}175 ml (28{+-}12%), 350{+-}110 ml (24{+-}7%) divided by Cant lie's plane, draining volumes from right and left lobes were 306{+-}200 ml (21{+-}14%) and 108{+-}69 ml (7{+-}5%). Divided by MHV plane, draining volumes from right and left lobes were 198{+-}123 ml (13{+-}8%) and 216{+-}73 ml (15{+-}5%). Volume difference of two sub-volumes was 108{+-}92 ml (7{+-}6%, 0-270 ml). The proportion of MHV draining volume had a considerable dispersion among 10 persons. In most of cases the draining volumes from the left lobe were bigger than those from right lobes. (author)

  12. Automated pericardium delineation and epicardial fat volume quantification from noncontrast CT.

    Science.gov (United States)

    Ding, Xiaowei; Terzopoulos, Demetri; Diaz-Zamudio, Mariana; Berman, Daniel S; Slomka, Piotr J; Dey, Damini

    2015-09-01

    The authors aimed to develop and validate an automated algorithm for epicardial fat volume (EFV) quantification from noncontrast CT. The authors developed a hybrid algorithm based on initial segmentation with a multiple-patient CT atlas, followed by automated pericardium delineation using geodesic active contours. A coregistered segmented CT atlas was created from manually segmented CT data and stored offline. The heart and pericardium in test CT data are first initialized by image registration to the CT atlas. The pericardium is then detected by a knowledge-based algorithm, which extracts only the membrane representing the pericardium. From its initial atlas position, the pericardium is modeled by geodesic active contours, which iteratively deform and lock onto the detected pericardium. EFV is automatically computed using standard fat attenuation range. The authors applied their algorithm on 50 patients undergoing routine coronary calcium assessment by CT. Measurement time was 60 s per-patient. EFV quantified by the algorithm (83.60 ± 32.89 cm(3)) and expert readers (81.85 ± 34.28 cm(3)) showed excellent correlation (r = 0.97, p < 0.0001), with no significant differences by comparison of individual data points (p = 0.15). Voxel overlap by Dice coefficient between the algorithm and expert readers was 0.92 (range 0.88-0.95). The mean surface distance and Hausdorff distance in millimeter between manually drawn contours and the automatically obtained contours were 0.6 ± 0.9 mm and 3.9 ± 1.7 mm, respectively. Mean difference between the algorithm and experts was 9.7% ± 7.4%, similar to interobserver variability between 2 readers (8.0% ± 5.3%, p = 0.3). The authors' novel automated method based on atlas-initialized active contours accurately and rapidly quantifies EFV from noncontrast CT.

  13. SPEQTACLE: An automated generalized fuzzy C-means algorithm for tumor delineation in PET

    Energy Technology Data Exchange (ETDEWEB)

    Lapuyade-Lahorgue, Jérôme; Visvikis, Dimitris; Hatt, Mathieu, E-mail: hatt@univ-brest.fr [LaTIM, INSERM, UMR 1101, Brest 29609 (France); Pradier, Olivier [LaTIM, INSERM, UMR 1101, Brest 29609, France and Radiotherapy Department, CHRU Morvan, Brest 29609 (France); Cheze Le Rest, Catherine [DACTIM University of Poitiers, Nuclear Medicine Department, CHU Milétrie, Poitiers 86021 (France)

    2015-10-15

    Purpose: Accurate tumor delineation in positron emission tomography (PET) images is crucial in oncology. Although recent methods achieved good results, there is still room for improvement regarding tumors with complex shapes, low signal-to-noise ratio, and high levels of uptake heterogeneity. Methods: The authors developed and evaluated an original clustering-based method called spatial positron emission quantification of tumor—Automatic Lp-norm estimation (SPEQTACLE), based on the fuzzy C-means (FCM) algorithm with a generalization exploiting a Hilbertian norm to more accurately account for the fuzzy and non-Gaussian distributions of PET images. An automatic and reproducible estimation scheme of the norm on an image-by-image basis was developed. Robustness was assessed by studying the consistency of results obtained on multiple acquisitions of the NEMA phantom on three different scanners with varying acquisition parameters. Accuracy was evaluated using classification errors (CEs) on simulated and clinical images. SPEQTACLE was compared to another FCM implementation, fuzzy local information C-means (FLICM) and fuzzy locally adaptive Bayesian (FLAB). Results: SPEQTACLE demonstrated a level of robustness similar to FLAB (variability of 14% ± 9% vs 14% ± 7%, p = 0.15) and higher than FLICM (45% ± 18%, p < 0.0001), and improved accuracy with lower CE (14% ± 11%) over both FLICM (29% ± 29%) and FLAB (22% ± 20%) on simulated images. Improvement was significant for the more challenging cases with CE of 17% ± 11% for SPEQTACLE vs 28% ± 22% for FLAB (p = 0.009) and 40% ± 35% for FLICM (p < 0.0001). For the clinical cases, SPEQTACLE outperformed FLAB and FLICM (15% ± 6% vs 37% ± 14% and 30% ± 17%, p < 0.004). Conclusions: SPEQTACLE benefitted from the fully automatic estimation of the norm on a case-by-case basis. This promising approach will be extended to multimodal images and multiclass estimation in future developments.

  14. Comparison of T2 and FLAIR imaging for target delineation in high grade gliomas

    Directory of Open Access Journals (Sweden)

    Miller Robert W

    2010-01-01

    Full Text Available Abstract Background FLAIR and T2 weighted MRIs are used based on institutional preference to delineate high grade gliomas and surrounding edema for radiation treatment planning. Although these sequences have inherent physical differences there is limited data on the clinical and dosimetric impact of using either or both sequences. Methods 40 patients with high grade gliomas consecutively treated between 2002 and 2008 of which 32 had pretreatment MRIs with T1, T2 and FLAIR available for review were selected for this study. These MRIs were fused with the treatment planning CT. Normal structures, clinical tumor volume (CTV and planning tumor volume (PTV were then defined on the T2 and FLAIR sequences. A Venn diagram analysis was performed for each pair of tumor volumes as well as a fractional component analysis to assess the contribution of each sequence to the union volume. For each patient the tumor volumes were compared in terms of total volume in cubic centimeters as well as anatomic location using a discordance index. The overlap of the tumor volumes with critical structures was calculated as a measure of predicted toxicity. For patients with MRI documented failures, the tumor volumes obtained using the different sequences were compared with the recurrent gross tumor volume (rGTV. Results The FLAIR CTVs and PTVs were significantly larger than the T2 CTVs and PTVs (p Conclusions Although both T2 and FLAIR MRI sequences are used to define high grade glial neoplasm and surrounding edema, our results show that the volumes generated using these techniques are different and not interchangeable. These differences have bearing on the use of intensity modulated radiation therapy (IMRT and highly conformal treatment as well as on future clinical trials where the bias of using one technique over the other may influence the study outcome.

  15. Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts.

    Science.gov (United States)

    Rödelsperger, Christian; Köhler, Sebastian; Schulz, Marcel H; Manke, Thomas; Bauer, Sebastian; Robinson, Peter N

    2009-11-01

    Ultraconservation has been variously defined to describe sequences that have remained identical or nearly so over long periods of evolution to a degree that is higher than expected for sequences under typical constraints associated with protein-coding sequences, splice sites, or transcription factor binding sites. Most intergenic ultraconserved elements (UCE) appear to be tissue-specific enhancers, whereas another class of intragenic UCEs is involved in regulation of gene expression by means of alternative splicing. In this study we define a set of 2827 short ultraconserved promoter regions (SUPR) in 5 kb upstream regions of 1268 human protein-coding genes using a definition of 98% identity for at least 30 bp in 7 mammalian species. Our analysis shows that SUPRs are enriched in genes playing a role in regulation and development. Many of the genes having a SUPR-containing promoter have additional alternative promoters that do not contain SUPRs. Comparison of such promoters by CAGE tag, EST, and Solexa read analysis revealed that SUPR-associated transcripts show a significantly higher mean expression than transcripts associated with non-SUPR-containing promoters. The same was true for the comparison between all SUPR-associated and non-SUPR-associated transcripts on a genome-wide basis. SUPR-associated genes show a highly significant tendency to occur in regions that are also enriched for intergenic short ultraconserved elements (SUE) in the vicinity of developmental genes. A number of predicted transcription factor binding sites (TFBS) are overrepresented in SUPRs and SUEs, including those for transcription factors of the homeodomain family, but in contrast to SUEs, SUPRs are also enriched in core-promoter motifs. These observations suggest that SUPRs delineate a distinct class of ultraconserved sequences.

  16. Further delineation of the KAT6B molecular and phenotypic spectrum.

    LENUS (Irish Health Repository)

    Gannon, Tamsin

    2015-09-01

    KAT6B sequence variants have been identified previously in both patients with the Say-Barber-Biesecker type of blepharophimosis mental retardation syndromes (SBBS) and in the more severe genitopatellar syndrome (GPS). We report on the findings in a previously unreported group of 57 individuals with suggestive features of SBBS or GPS. Likely causative variants have been identified in 34\\/57 patients and were commonly located in the terminal exons of KAT6B. Of those where parental samples could be tested, all occurred de novo. Thirty out of thirty-four had truncating variants, one had a missense variant and the remaining three had the same synonymous change predicted to affect splicing. Variants in GPS tended to occur more proximally to those in SBBS patients, and genotype\\/phenotype analysis demonstrated significant clinical overlap between SBBS and GPS. The de novo synonymous change seen in three patients with features of SBBS occurred more proximally in exon 16. Statistical analysis of clinical features demonstrated that KAT6B variant-positive patients were more likely to display hypotonia, feeding difficulties, long thumbs\\/great toes and dental, thyroid and patella abnormalities than KAT6B variant-negative patients. The few reported patients with KAT6B haploinsufficiency had a much milder phenotype, though with some features overlapping those of SBBS. We report the findings in a previously unreported patient with a deletion of the KAT6B gene to further delineate the haploinsufficiency phenotype. The molecular mechanisms giving rise to the SBBS and GPS phenotypes are discussed.

  17. Fuzzy spectral clustering for automated delineation of chronic wound region using digital images.

    Science.gov (United States)

    Manohar Dhane, Dhiraj; Maity, Maitreya; Mungle, Tushar; Bar, Chittaranjan; Achar, Arun; Kolekar, Maheshkumar; Chakraborty, Chandan

    2017-04-23

    Chronic wound is an abnormal disease condition of localized injury to the skin and its underlying tissues having physiological impaired healing response. Assessment and management of such wound is a significant burden on the healthcare system. Currently, precise wound bed estimation depends on the clinical judgment and remains a difficult task. The paper introduces a novel method for ulcer boundary demarcation and estimation, using optical images captured by a hand-held digital camera. The proposed approach involves gray based fuzzy similarity measure using spatial knowledge of an image. The fuzzy measure is used to construct similarity matrix. The best color channel was chosen by calculating the mean contrast for 26 different color channels of 14 color spaces. It was found that Db color channel has highest mean contrast which provide best segmentation result in comparison with other color channels. The fuzzy spectral clustering (FSC) method was applied on Db color channel for effective delineation of wound region. The segmented wound regions were effectively post-processed using various morphological operations. The performance of proposed segmentation technique was validated by ground-truth images labeled by two experienced dermatologists and a surgeon. The FSC approach was tested on 70 images. FSC effectively segmented targeted ulcer boundary yielding 91.5% segmentation accuracy, 86.7%, Dice index and 79.0%. Jaccard score. The sensitivity and specificity was found to be 87.3% and 95.7% respectively. The performance evaluation shows the robustness of the proposed method of wound area segmentation and its potential to be used for designing patient comfort centric wound care system. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Delineation of diverse macrophage activation programs in response to intracellular parasites and cytokines.

    Directory of Open Access Journals (Sweden)

    Shuyi Zhang

    Full Text Available BACKGROUND: The ability to reside and proliferate in macrophages is characteristic of several infectious agents that are of major importance to public health, including the intracellular parasites Trypanosoma cruzi (the etiological agent of Chagas disease and Leishmania species (etiological agents of Kala-Azar and cutaneous leishmaniasis. Although recent studies have elucidated some of the ways macrophages respond to these pathogens, the relationships between activation programs elicited by these pathogens and the macrophage activation programs elicited by bacterial pathogens and cytokines have not been delineated. METHODOLOGY/PRINCIPAL FINDINGS: To provide a global perspective on the relationships between macrophage activation programs and to understand how certain pathogens circumvent them, we used transcriptional profiling by genome-wide microarray analysis to compare the responses of mouse macrophages following exposure to the intracellular parasites T. cruzi and Leishmania mexicana, the bacterial product lipopolysaccharide (LPS, and the cytokines IFNG, TNF, IFNB, IL-4, IL-10, and IL-17. We found that LPS induced a classical activation state that resembled macrophage stimulation by the Th1 cytokines IFNG and TNF. However, infection by the protozoan pathogen L. mexicana produced so few transcriptional changes that the infected macrophages were almost indistinguishable from uninfected cells. T. cruzi activated macrophages produced a transcriptional signature characterized by the induction of interferon-stimulated genes by 24 h post-infection. Despite this delayed IFN response by T. cruzi, the transcriptional response of macrophages infected by the kinetoplastid pathogens more closely resembled the transcriptional response of macrophages stimulated by the cytokines IL-4, IL-10, and IL-17 than macrophages stimulated by Th1 cytokines. CONCLUSIONS/SIGNIFICANCE: This study provides global gene expression data for a diverse set of biologically

  19. A GIS-based methodology to delineate potential areas for groundwater development: a case study from Kathmandu Valley, Nepal

    Science.gov (United States)

    Pandey, Vishnu P.; Shrestha, Sangam; Kazama, Futaba

    2013-06-01

    For an effective planning of activities aimed at recovering aquifer depletion and maintaining health of groundwater ecosystem, estimates of spatial distribution in groundwater storage volume would be useful. The estimated volume, if analyzed together with other hydrogeologic characteristics, may help delineate potential areas for groundwater development. This study proposes a GIS-based ARC model to delineate potential areas for groundwater development; where `A' stands for groundwater availability, `R' for groundwater release potential of soil matrix, and `C' for cost for groundwater development. The model is illustrated with a case of the Kathmandu Valley in Central Nepal, where active discussions are going on to develop and implement groundwater management strategies. The study results show that shallow aquifers have high groundwater storage potential (compared to the deep) and favorable areas for groundwater development are concentrated at some particular areas in shallow and deep aquifers. The distribution of groundwater storage and potential areas for groundwater development are then mapped using GIS.

  20. An Algorithm for Automatic Road Asphalt Edge Delineation from Mobile Laser Scanner Data Using the Line Clouds Concept

    Directory of Open Access Journals (Sweden)

    Carlos Cabo

    2016-09-01

    Full Text Available Accurate road asphalt extent delineation is needed for road and street planning, road maintenance, and road safety assessment. In this article, a new approach for automatic roadside delineation is developed based on the line clouds concept. The method relies on line cloud grouping from point cloud laser data. Using geometric criteria, the initial 3D LiDAR point data is structured in lines covering the road surface. These lines are then grouped according to a set of quasi-planar restriction rules. Road asphalt edge limits are extracted from the end points of lines belonging to these groups. Finally a two-stage smoothing procedure is applied to correct for edge occlusions and other anomalies. The method was tested on a 2.1 km stretch of road, and the results were checked using a RTK-GNSS measured dataset as ground truth. Correctness and completeness were 99% and 97%, respectively.

  1. MR-based automatic delineation of volumes of interest in human brain PET images using probability maps

    DEFF Research Database (Denmark)

    Svarer, Claus; Madsen, Karina; Hasselbalch, Steen G.;

    2005-01-01

    delineation of the VOI set. The approach was also shown to work equally well in individuals with pronounced cerebral atrophy. Probability-map-based automatic delineation of VOIs is a fast, objective, reproducible, and safe way to assess regional brain values from PET or SPECT scans. In addition, the method......The purpose of this study was to develop and validate an observer-independent approach for automatic generation of volume-of-interest (VOI) brain templates to be used in emission tomography studies of the brain. The method utilizes a VOI probability map created on the basis of a database of several...... subjects' MR-images, where VOI sets have been defined manually. High-resolution structural MR-images and 5-HT(2A) receptor binding PET-images (in terms of (18)F-altanserin binding) from 10 healthy volunteers and 10 patients with mild cognitive impairment were included for the analysis. A template including...

  2. MR-based automatic delineation of volumes of interest in human brain PET images using probability maps

    DEFF Research Database (Denmark)

    Svarer, Claus; Madsen, Karina; Hasselbalch, Steen G.;

    2005-01-01

    delineation of the VOI set. The approach was also shown to work equally well in individuals with pronounced cerebral atrophy. Probability-map-based automatic delineation of VOIs is a fast, objective, reproducible, and safe way to assess regional brain values from PET or SPECT scans. In addition, the method...... applies well in elderly subjects, even in the presence of pronounced cerebral atrophy...... subjects' MR-images, where VOI sets have been defined manually. High-resolution structural MR-images and 5-HT(2A) receptor binding PET-images (in terms of (18)F-altanserin binding) from 10 healthy volunteers and 10 patients with mild cognitive impairment were included for the analysis. A template including...

  3. FDG PET/CT for rectal carcinoma radiotherapy treatment planning: comparison of functional volume delineation algorithms and clinical challenges.

    Science.gov (United States)

    Withofs, Nadia; Bernard, Claire; Van der Rest, Catherine; Martinive, Philippe; Hatt, Mathieu; Jodogne, Sebastien; Visvikis, Dimitris; Lee, John A; Coucke, Philippe A; Hustinx, Roland

    2014-09-08

    PET/CT imaging could improve delineation of rectal carcinoma gross tumor volume (GTV) and reduce interobserver variability. The objective of this work was to compare various functional volume delineation algorithms. We enrolled 31 consecutive patients with locally advanced rectal carcinoma. The FDG PET/CT and the high dose CT (CTRT) were performed in the radiation treatment position. For each patient, the anatomical GTVRT was delineated based on the CTRT and compared to six different functional/metabolic GTVPET derived from two automatic segmentation approaches (FLAB and a gradient-based method); a relative threshold (45% of the SUVmax) and an absolute threshold (SUV > 2.5), using two different commercially available software (Philips EBW4 and Segami OASIS). The spatial sizes and shapes of all volumes were compared using the conformity index (CI). All the delineated metabolic tumor volumes (MTVs) were significantly different. The MTVs were as follows (mean ± SD): GTVRT (40.6 ± 31.28ml); FLAB (21.36± 16.34 ml); the gradient-based method (18.97± 16.83ml); OASIS 45% (15.89 ± 12.68 ml); Philips 45% (14.52 ± 10.91 ml); OASIS 2.5 (41.6 2 ± 33.26 ml); Philips 2.5 (40 ± 31.27 ml). CI between these various volumes ranged from 0.40 to 0.90. The mean CI between the different MTVs and the GTVCT was algorithms and the software products. The manipulation of PET/CT images and MTVs, such as the DICOM transfer to the Radiation Oncology Department, induced additional volume variations.

  4. Multimodality imaging with CT, MR and FDG-PET for radiotherapy target volume delineation in oropharyngeal squamous cell carcinoma

    OpenAIRE

    Bird, David; Scarsbrook, Andrew F.; Sykes, Jonathan; Ramasamy, Satiavani; Subesinghe, Manil; Carey, Brendan; Wilson, Daniel J.; Roberts, Neil; McDermott, Gary; KARAKAYA, Ebru; BAYMAN, Evrim; Sen, Mehmet; Speight, Richard; Prestwich, Robin J. D.

    2015-01-01

    Background This study aimed to quantify the variation in oropharyngeal squamous cell carcinoma gross tumour volume (GTV) delineation between CT, MR and FDG PET-CT imaging. Methods A prospective, single centre, pilot study was undertaken where 11 patients with locally advanced oropharyngeal cancers (2 tonsil, 9 base of tongue primaries) underwent pre-treatment, contrast enhanced, FDG PET-CT and MR imaging, all performed in a radiotherapy treatment mask. CT, MR and CT-MR GTVs were contoured by ...

  5. Field Testing New Plot Designs and Methods for Determining Hydrophytic Vegetation during Wetland Delineations in the United States

    Science.gov (United States)

    2014-03-01

    describe the hue, value, and chroma of each soil layer when appropriate (Gretag/ Macbeth 2000) and to determine if hydric soil indicators as described in...on vegetation determinations made during wetland delineations. Wetlands 31:865–873. Gretag/ Macbeth . 2000. Munsell® color. New Windsor, NY: Gretag... Macbeth . Kartesz, J. T. 2009. Floristic Synthesis of North America, Version 1.0. Biota of North America Program (BONAP). Kent, M., and P. Coker

  6. Individual tree crown delineation using localized contour tree method and airborne LiDAR data in coniferous forests

    Science.gov (United States)

    Wu, Bin; Yu, Bailang; Wu, Qiusheng; Huang, Yan; Chen, Zuoqi; Wu, Jianping

    2016-10-01

    Individual tree crown delineation is of great importance for forest inventory and management. The increasing availability of high-resolution airborne light detection and ranging (LiDAR) data makes it possible to delineate the crown structure of individual trees and deduce their geometric properties with high accuracy. In this study, we developed an automated segmentation method that is able to fully utilize high-resolution LiDAR data for detecting, extracting, and characterizing individual tree crowns with a multitude of geometric and topological properties. The proposed approach captures topological structure of forest and quantifies topological relationships of tree crowns by using a graph theory-based localized contour tree method, and finally segments individual tree crowns by analogy of recognizing hills from a topographic map. This approach consists of five key technical components: (1) derivation of canopy height model from airborne LiDAR data; (2) generation of contours based on the canopy height model; (3) extraction of hierarchical structures of tree crowns using the localized contour tree method; (4) delineation of individual tree crowns by segmenting hierarchical crown structure; and (5) calculation of geometric and topological properties of individual trees. We applied our new method to the Medicine Bow National Forest in the southwest of Laramie, Wyoming and the HJ Andrews Experimental Forest in the central portion of the Cascade Range of Oregon, U.S. The results reveal that the overall accuracy of individual tree crown delineation for the two study areas achieved 94.21% and 75.07%, respectively. Our method holds great potential for segmenting individual tree crowns under various forest conditions. Furthermore, the geometric and topological attributes derived from our method provide comprehensive and essential information for forest management.

  7. Neuhauser syndrome: a rare association of megalocornea and mental retardation. Review of the literature and further phenotype delineation.

    Science.gov (United States)

    Gutiérrez-Amavizca, B E; Juárez-Vázquez, C I; Orozco-Castellanos, R; Arnaud, L; Macías-Gómez, N M; Barros-Nuñez, P

    2013-01-01

    Megalocornea can be observed as an isolated abnormality that is inherited by an X-linked mechanism, or it can be associated with other entities. Megalocornea-mental retardation syndrome, also known as Neuhauser syndrome, is a rare autosomal recessive congenital disorder that presents with megalocornea, mental retardation, hypotonia, and facial dysmorphism, among other signs. With the report of this new case, and after an extensive review of the literature, we attempt to delineate the Neuhauser syndrome phenotype.

  8. The Valley Bottom Extraction Tool (V-BET): A GIS tool for delineating valley bottoms across entire drainage networks

    Science.gov (United States)

    Gilbert, Jordan T.; Macfarlane, William W.; Wheaton, Joseph M.

    2016-12-01

    The shape, size and extent of a valley bottom dictates the form and function of the associated river or stream. Consequently, accurate, watershed-wide delineation of valley bottoms is increasingly recognized as a necessary component of watershed management. While many valley bottom delineation approaches exist, methods that can be effectively applied across entire drainage networks to produce reasonably accurate results are lacking. Most existing tools are designed to work using high resolution topography data (i.e. > 2 m resolution Digital Elevation Model (DEM)) and can only be applied over relatively short reach lengths due to computational or data availability limitations. When these precise mapping approaches are applied throughout drainage networks (i.e. 102-104 km), the computational techniques often either do not scale, or the algorithms perform inconsistently. Other tools that produce outputs at broader scale extents generally utilize coarser input topographic data to produce more poorly resolved valley bottom approximations. To fill this methodology gap and produce relatively accurate valley bottoms over large areas, we developed an algorithm that accepts terrain data from one to 10 m with slope and valley width parameters that scale based on drainage area, allowing for watershed-scale valley bottom delineation. We packaged this algorithm in the Valley Bottom Extraction Tool (V-BET) as an open-source ArcGIS toolbox for ease of use. To illustrate V-BET's scalability and test the tool's robustness across different physiographic settings, we delineated valley bottoms for the entire perennial drainage network of Utah as well as twelve watersheds across the interior Columbia River Basin (totaling 55,400 km) using 10 m DEMs. We found that even when driven with relatively coarse data (10 m DEMs), V-BET produced a relatively accurate approximation of valley bottoms across the entire watersheds of these diverse physiographic regions.

  9. Evaluation of atlas based auto-segmentation for head and neck target volume delineation in adaptive/replan IMRT

    Science.gov (United States)

    Speight, R.; Karakaya, E.; Prestwich, R.; Sen, M.; Lindsay, R.; Harding, R.; Sykes, J.

    2014-03-01

    IMRT for head and neck patients requires clinicians to delineate clinical target volumes (CTV) on a planning-CT (>2hrs/patient). When patients require a replan-CT, CTVs must be re-delineated. This work assesses the performance of atlas-based autosegmentation (ABAS), which uses deformable image registration between planning and replan-CTs to auto-segment CTVs on the replan-CT, based on the planning contours. Fifteen patients with planning-CT and replan-CTs were selected. One clinician delineated CTVs on the planning-CTs and up to three clinicians delineated CTVs on the replan-CTs. Replan-CT volumes were auto-segmented using ABAS using the manual CTVs from the planning-CT as an atlas. ABAS CTVs were edited manually to make them clinically acceptable. Clinicians were timed to estimate savings using ABAS. CTVs were compared using dice similarity coefficient (DSC) and mean distance to agreement (MDA). Mean inter-observer variability (DSC>0.79 and MDA0.91 and MDAABAS to manual CTVs gave DSC=0.86 and MDA=2.07mm. Once edited, ABAS volumes agreed more closely with the manual CTVs (DSC=0.87 and MDA=1.87mm). The mean clinician time required to produce CTVs reduced from 169min to 57min when using ABAS. ABAS segments volumes with accuracy close to inter-observer variability however the volumes require some editing before clinical use. Using ABAS reduces contouring time by a factor of three.

  10. Evaluation of terrain datasets for LiDAR data thinning and DEM generation for watershed delineation applications

    Science.gov (United States)

    Olivera, F.; Ferreira, C.; Djokic, D.

    2010-12-01

    Watershed delineation based on Digital Elevation Models (DEM) is currently a standard practice in hydrologic studies. Efforts to develop DEMs of high resolution continues to take place, although the advantages of increasing the accuracy of the results are partially offset by the increased file size, difficulty to handle them, slow screen rendering and increase computational effort. Among these efforts, those based on the use of Light Detection and Ranging (LiDAR) pose the problem that interpolation techniques in commercially available GIS software packages (e.g., IDW, Spline, Kriging and TOPORASTER, among others) for developing DEMs from point elevations have difficulty processing large amounts of data. Terrain Dataset is an alternative format for storing topographic data that intelligently decimates data points and creates simplified, yet equally accurate for practical purposes, DEMs or Triangular Irregular Networks (TIN). This study uses terrain datasets to evaluate the impact that the thinning method (i.e., window size and z-value), pyramid level and the interpolation technique (linear or natural neighbor) used to create the DEMs have on the watersheds delineated from them. Two case studies were considered for assessing the effect of the different methods and techniques. One of them consisted of dendritic topography in Williamson Creek, Austin, Texas, and the other of deranged topography in Hillsborough County, Florida. The results were compared using three standardized error metrics that measure the accuracy of the watershed boundaries, and computational effort. For the Williamson creek (steeper terrain), point thinning during the terrain creation process or the interpolation method choice did not affect the watershed delineation; while, in the Hillsborough (flat terrain), the method for point thinning and interpolation techniques highly influenced the resulting watershed delineation.

  11. Hydrogeologic Investigation, Water Chemistry Analysis, and Model Delineation of contributing Areas for City of Tallahassee Public-Supply Wells, Tallahassee, Florida

    Science.gov (United States)

    Davis, J. Hal; Katz, Brian G.

    2007-01-01

    Ground water from the Upper Floridan aquifer is the sole source of water supply for Tallahassee, Florida, and the surrounding area. The City of Tallahassee (the City) currently operates 28 water-supply wells; 26 wells are distributed throughout the City and 2 are located in Woodville, Florida. Most of these wells yield an ample supply of potable water; however, water from several wells has low levels of tetrachloroethylene (PCE). The City removes the PCE from the water by passing it through granular-activated carbon units before distribution. To ensure that water-supply wells presently free of contamination remain clean, it is necessary to understand the ground-water flow system in sufficient detail to protect the contributing areas. Ground-water samples collected from four public-supply wells were analyzed for tritium (3H), chlorofluorocarbons (CFCs), and sulfur hexafluoride (SF6). Using data for the CFC compounds, apparent ground-water ages ranged from 7 to 31 years. For SF6, the apparent ages tended to be about 5 to 10 years younger than those from CFCs. Apparent ages based on the tritium/tritiogenic helium-3 (3H/3Hetrit) method ranged from 26 to 33 years. The three dating methods indicate that the apparent age of ground water generally decreases from northern to southern Leon County. This southward trend of decreasing ages is consistent with increasing amounts of recharge that occur as ground water moves from north to south. The ground-water age data derived by geochemical and tracer analyses were used in combination with the flow model and particle tracking to determine an effective porosity for the Hawthorn clays and Upper Floridan aquifer. The effective porosities for the Upper Floridan aquifer that resulted in best model matches were averaged to produce an effective porosity of 7 percent, and the effective porosities for the Hawthorn clays that resulted in a match were averaged to produce an effective porosity of 22 percent. Probabilistic contributing areas

  12. Current trends in intraoperative optical imaging for functional brain mapping and delineation of lesions of language cortex.

    Science.gov (United States)

    Prakash, Neal; Uhlemann, Falk; Sheth, Sameer A; Bookheimer, Susan; Martin, Neil; Toga, Arthur W

    2009-08-01

    Resection of a cerebral arteriovenous malformation (AVM), epileptic focus, or glioma, ideally has a prerequisite of microscopic delineation of the lesion borders in relation to the normal gray and white matter that mediate critical functions. Currently, Wada testing and functional magnetic resonance imaging (fMRI) are used for preoperative mapping of critical function, whereas electrical stimulation mapping (ESM) is used for intraoperative mapping. For lesion delineation, MRI and positron emission tomography (PET) are used preoperatively, whereas microscopy and histological sectioning are used intraoperatively. However, for lesions near eloquent cortex, these imaging techniques may lack sufficient resolution to define the relationship between the lesion and language function, and thus not accurately determine which patients will benefit from neurosurgical resection of the lesion without iatrogenic aphasia. Optical techniques such as intraoperative optical imaging of intrinsic signals (iOIS) show great promise for the precise functional mapping of cortices, as well as delineation of the borders of AVMs, epileptic foci, and gliomas. Here we first review the physiology of neuroimaging, and then progress towards the validation and justification of using intraoperative optical techniques, especially in relation to neurosurgical planning of resection AVMs, epileptic foci, and gliomas near or in eloquent cortex. We conclude with a short description of potential novel intraoperative optical techniques.

  13. Delineation of seismic source zones based on seismicity parameters and probabilistic evaluation of seismic hazard using logic tree approach

    Indian Academy of Sciences (India)

    K S Vipin; T G Sitharam

    2013-06-01

    The delineation of seismic source zones plays an important role in the evaluation of seismic hazard. In most of the studies the seismic source delineation is done based on geological features. In the present study, an attempt has been made to delineate seismic source zones in the study area (south India) based on the seismicity parameters. Seismicity parameters and the maximum probable earthquake for these source zones were evaluated and were used in the hazard evaluation. The probabilistic evaluation of seismic hazard for south India was carried out using a logic tree approach. Two different types of seismic sources, linear and areal, were considered in the present study to model the seismic sources in the region more precisely. In order to properly account for the attenuation characteristics of the region, three different attenuation relations were used with different weightage factors. Seismic hazard evaluation was done for the probability of exceedance (PE) of 10% and 2% in 50 years. The spatial variation of rock level peak horizontal acceleration (PHA) and spectral acceleration (Sa) values corresponding to return periods of 475 and 2500 years for the entire study area are presented in this work. The peak ground acceleration (PGA) values at ground surface level were estimated based on different NEHRP site classes by considering local site effects.

  14. Regional flow system delineation in arid karstic basins with sparse hydrogeologic data: Cuatro Cienegas Basin, Coahuila, Mexico

    Science.gov (United States)

    Wolaver, B. D.; Sharp, J. M.; Rodriguez, J. M.

    2006-12-01

    We develop procedures for the delineation of regional groundwater flow systems in arid, karstic basins with sparse hydrogeologic data using surface topography data, geologic mapping, permeability data, chloride concentrations of groundwater and precipitation, and measured discharge data. Aquifers are characterized using geographic information systems (GIS) for groundwater catchment delineation, an analytical model for interbasin flow evaluation, a chloride balance approach for recharge estimation, and a water budget for mapping contributing catchments over a 160,000 km2 region (24.87° to 28.70° north latitude and 100.68° west to 104.75° west longitude). The study area includes the Cuatro Cienegas Basin (CCB) of Coahuila, Mexico, a National Biosphere Reserve containing springs that support groundwater-dependent ecosystems and irrigated agriculture. Sustainable groundwater development is a key issue on the U.S. Mexico border. However, these procedures may be applicable in similar settings globally. We delineate groundwater catchments that contribute local and regional groundwater discharge to CCB springs and identify a large regional flow system includes mountain recharge from as both the Sierra Madre Oriental and Occidental.

  15. Adaptive sampling based on the cumulative distribution function of order statistics to delineate heavy-metal contaminated soils using kriging

    Energy Technology Data Exchange (ETDEWEB)

    Juang, K.-W. [Department of Post-Modern Agriculture, MingDao University, Pitou, Changhua, Taiwan (China); Lee, D.-Y. [Graduate Institute of Agricultural Chemistry, National Taiwan University, Taipei, Taiwan (China)]. E-mail: dylee@ccms.ntu.edu.tw; Teng, Y.-L. [Graduate Institute of Agricultural Chemistry, National Taiwan University, Taipei, Taiwan (China)

    2005-11-15

    Correctly classifying 'contaminated' areas in soils, based on the threshold for a contaminated site, is important for determining effective clean-up actions. Pollutant mapping by means of kriging is increasingly being used for the delineation of contaminated soils. However, those areas where the kriged pollutant concentrations are close to the threshold have a high possibility for being misclassified. In order to reduce the misclassification due to the over- or under-estimation from kriging, an adaptive sampling using the cumulative distribution function of order statistics (CDFOS) was developed to draw additional samples for delineating contaminated soils, while kriging. A heavy-metal contaminated site in Hsinchu, Taiwan was used to illustrate this approach. The results showed that compared with random sampling, adaptive sampling using CDFOS reduced the kriging estimation errors and misclassification rates, and thus would appear to be a better choice than random sampling, as additional sampling is required for delineating the 'contaminated' areas. - A sampling approach was derived for drawing additional samples while kriging.

  16. Geophysical and geochemical characterization and delineation of a crude oil spill in a highly saline environment

    Science.gov (United States)

    Ross, Cameron Stuart

    Geophysical and geochemical methods were used at Grand Terre 1 (GT1) Island off the coast of Louisiana, an island that had been heavily contaminated with crude oil associated with the April 2010 BP Deepwater Horizon oil spill. Electrical methods and aqueous geochemistry have proven sensitive in the detection of contaminates, as well as the biological and chemical processes associated with the biodegradation of hydrocarbons in the subsurface. However, to the author's knowledge, all of these studies have dealt with mature (or aged) spills within a freshwater environment. The BP Deepwater Horizon oil spill therefor provided a unique opportunity to not only use traditional geophysical and geochemical methods to characterize and delineate fresh crude oil in a highly saline environment and to capture the early time biogeophysical signals resulting from the physical, chemical, and microbial transformation of crude oil in a highly saline environment. Electrical resistivity and electromagnetic methods were used. Barometric pressure, temperature, electrical conductivity, and water level values for the shallow groundwater were continuously logged. Geochemical analysis was performed on water samples collected from piezometers networks installed in the impacted, transitional, and background areas. Sediment cores were retrieved throughout the site and used for grain size analysis, magnetic susceptibility, total organic and inorganic carbon, and x-ray fluorescence. Soil samples were collected for microbial analyses from the impacted and background areas. Microcosms were set up to determine the microbial diversity analysis was used to determine microbial community composition, and biodegradation potential of indigenous populations. Based on the geochemical, microbial, and soil analysis, the relatively higher apparent resistivity anomaly observed between the depths of 0.20 m to 1.20 m bgs could be explained by two scenarios(1): elevated resistivity was caused by gas in the

  17. Role delineation study for the American Society for Pain Management Nursing.

    Science.gov (United States)

    Willens, Joyce S; DePascale, Christine; Penny, James

    2010-06-01

    A role delineation study, or job analysis, is a necessary step in the development of a quality credentialing program. The process requires a logical approach and systematic methods to have an examination that is legally defensible. There are three main phases: initial development and evaluation, validation study, and development of test specifications. In the first phase, the content expert panel discussed performance domains that exist in pain management nursing. The six domains developed were: 1) assessment, monitoring, and evaluation of pain; 2) pharmacologic pain management; 3) nonpharmacologic pain management; 4) therapeutic communication and counseling; 5) patient and family teaching; and 6) collaborative and organizational activities. The panel then produced a list of 70 task statements to develop an online survey which was sent to independent reviewers with expertise in pain management nursing. After the panel reviewed the results of the pilot test, it was decided to clarify a few items that did not perform as expected. After the questionnaire was finalized it was distributed to 1,500 pain management nurses. The final yield was 585 usable returns, for a response rate of 39%. Thirty-three percent of the respondents reported a bachelor's degree in nursing as the highest degree awarded. Over 80% indicated that they were certified in pain management. Over 35% reported working in a staff position, 14% as a nurse practitioner, and 13% as a clinical nurse specialist. Part of the questionnaire asked the participants to rate performance expectation, consequence or the likelihood that the newly certified pain management nurse could cause harm, and the frequency of how often that nurse performs in each of the performance domains. The performance expectation was rated from 0 (the newly certified pain management nurse was not at all expected to perform the domain task) to 2 (after 6 months the newly certified pain management nurse would be expected to perform the domain

  18. Delineating Tree Types in a Complex Tropical Forest Setting Using High Resolution Multispectral Satellite Imagery

    Science.gov (United States)

    Cross, M.

    2016-12-01

    An improved process for the identification of tree types from satellite imagery for tropical forests is needed for more accurate assessments of the impact of forests on the global climate. La Selva Biological Station in Costa Rica was the tropical forest area selected for this particular study. WorldView-3 imagery was utilized because of its high spatial, spectral and radiometric resolution, its availability, and its potential to differentiate species in a complex forest setting. The first-step was to establish confidence in the high spatial and high radiometric resolution imagery from WorldView-3 in delineating tree types within a complex forest setting. In achieving this goal, ASD field spectrometer data were collected of specific tree species to establish solid ground control within the study site. The spectrometer data were collected from the top of each specific tree canopy utilizing established towers located at La Selva Biological Station so as to match the near-nadir view of the WorldView-3 imagery. The ASD data was processed utilizing the spectral response functions for each of the WorldView-3 bands to convert the ASD data into a band specific reflectivity. This allowed direct comparison of the ASD spectrometer reflectance data to the WorldView-3 multispectral imagery. The WorldView-3 imagery was processed to surface reflectance using two standard atmospheric correction procedures and the proprietary DigitalGlobe Atmospheric Compensation (AComp) product. The most accurate correction process was identified through comparison to the spectrometer data collected. A series of statistical measures were then utilized to access the accuracy of the processed imagery and which imagery bands are best suited for tree type identification. From this analysis, a segmentation/classification process was performed to identify individual tree type locations within the study area. It is envisioned the results of this study will improve traditional forest classification

  19. A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea

    Science.gov (United States)

    Srivastava, Rishi; Upadhyaya, Hari D.; Kumar, Rajendra; Daware, Anurag; Basu, Udita; Shimray, Philanim W.; Tripathi, Shailesh; Bharadwaj, Chellapilla; Tyagi, Akhilesh K.; Parida, Swarup K.

    2017-01-01

    validity of two functional allelic variants-containing genes localized at major flowering time QTLs was apparent by their identification from multiple intra-/inter-specific mapping populations of chickpea. The functionally relevant molecular tags delineated can be of immense use for deciphering the natural allelic diversity-based domestication pattern of flowering time and expediting genomics-aided crop improvement to develop early flowering cultivars of chickpea. PMID:28751895

  20. Novel Approaches for Delineating and Studying "Hotspots" and "Hot Moments" in Fluvial Environments

    Science.gov (United States)

    Williams, K. H.; Bücker, M.; Flores Orozco, A.; Hobson, C.; Robbins, M.

    2014-12-01

    Experiments at the Department of Energy's Rifle, CO (USA) field site have long focused on stimulated biogeochemical pathways arising from organic carbon injection. While reductive pathways and their relation to uranium immobilization have been a focus since 2002, ongoing studies are exploring oxidative pathways and their role in mediating fluxes of C, N, S, and aqueous metals. Insights gained from 'stimulation' experiments are providing insight into analogous natural biogeochemical pathways that mediate elemental cycling in the absence of exogenous carbon. Such reactions are instead mediated by endogenous pools of natural organic matter (NOM) deposited during aggradation of aquifer sediments associated with fluvial processes within the Colorado River floodplain. Discrete lenses of fine-grained, organic-rich sediments enriched in reduced species, such as Fe(II) and iron sulfides have been identified along the active margin of the floodplain. Referred to as "naturally reduced zones" (NRZs), these localities constitute a distinct facies type within an otherwise gravel-dominated, largely NOM-deficient matrix. NRZs represent 'hotspots' of seasonally intense C, N, S, and U cycling during excursions in groundwater elevation. Air bubble imbibition within the capillary fringe is inferred to contribute to seasonally oxic groundwater, with its puntuated, 'hot moment' like impact on redox-mediated reactions exhibiting close correspondence to those induced through the intentional introduction of oxidants. Reactions induce sharp gradients in nitrate and sulfate resulting from elevated rates of nitrification and oxidation of reduced sulfur as dissolved oxygen becomes non-limiting. Given their outsized role in constraining the location and timing of critcal element cycling pathways, delineating the distribution of NRZs across scales of relevance to natural field systems is of great importance. Novel mapping approaches borrowed from the field of exploration geophysics provide one

  1. Radiotherapy planning for glioblastoma based on a tumor growth model: improving target volume delineation

    Science.gov (United States)

    Unkelbach, Jan; Menze, Bjoern H.; Konukoglu, Ender; Dittmann, Florian; Le, Matthieu; Ayache, Nicholas; Shih, Helen A.

    2014-02-01

    crucial model input. We conclude that the tumor growth model provides a method to account for anisotropic growth patterns of glioma, and may therefore provide a tool to make target delineation more objective and automated.

  2. Applied gamma ray spectrometry and remote sensing in delineation of nepheline syenites in rift tectonic settings

    Science.gov (United States)

    Chiwona, Annock Gabriel; Manning, David A. C.; Gaulton, Rachel; Cortes, Joaquin A.

    2017-04-01

    The United Nations (2016) observes that 'Neglected Development Minerals' including industrial minerals such as nepheline syenites have great potential for sustainable development, yet their exploitation has not been equally promoted like high value minerals. Nepheline syenites have great potential as alternative potassium (K) silicate fertiliser, as well as a source of Rare Earths. Demand for K fertiliser keeps rising by 3-3.5% annually (Jena et al., 2014) due to increased need to replace K removal from the soil (Sheldrick et al., 2002). The situation is most critical in Sub-Sahara Africa where nutrient loss due to intensive farming accounts to 22kg N, 2.5 kg P and 15 kg of K per hectare annually (Keeble, 2012). Ironically, Africa with 15% of global population, which is also expected to double by 2040 (Manning, 2015), uses only 1.5% of global K fertiliser. In this study, we use recently acquired countrywide airborne geophysical gamma ray data of Malawi (Bates & Mechennef, 2013) and satellite remote sensing data to identify nepheline syenites, suitable as sources of K silicate fertilizer, in rift tectonic settings. Initial focus was on the East African Rift System (EARS) starting with Malawi. Results from these two techniques are compared with X-ray fluorescence (XRF) geochemical analyses of sample collected from fieldwork in some potential areas of Malawi. With lessons from the Rochagem movement (Theodoro & Leonardos, 2006), identification of novel alternative potash sources in Africa will greatly benefit millions of farmers in developing countries, especially in Sub Sahara Africa where fertiliser costs are very high. Considering that high-resolution airborne geophysical data is not available in many African countries due to high costs associated with data acquisition campaigns, alternative and effective remote sensing approaches for delineating nepheline syenite rocks are necessary. References: [1] Bates M & Mechennef, F (2013) Data Acquisition Report, Sander

  3. Laser Protection TIL

    Data.gov (United States)

    Federal Laboratory Consortium — The Laser Protection TIL conducts research and analysis of laser protection materials along with integration schemes. The lab's objectives are to limit energy coming...

  4. SU-E-J-221: A Novel Expansion Method for MRI Based Target Delineation in Prostate Radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Ruiz, B [Alliance Oncology, Newburyport, MA (United States); East Carolina University, Greenville, NC (United States); Feng, Y [East Carolina University, Greenville, NC (United States); Shores, R [Alliance Oncology, Greenville, MS (United States); Fung, C [Beth Isreal Deaconess Medical Center, Radiation Oncology, Newburyport, MA (United States)

    2015-06-15

    Purpose: To compare a novel bladder/rectum carveout expansion method on MRI delineated prostate to standard CT and expansion based methods for maintaining prostate coverage while providing superior bladder and rectal sparing. Methods: Ten prostate cases were planned to include four trials: MRI vs CT delineated prostate/proximal seminal vesicles, and each image modality compared to both standard expansions (8mm 3D expansion and 5mm posterior, i.e. ∼8mm) and carveout method expansions (5mm 3D expansion, 4mm posterior for GTV-CTV excluding expansion into bladder/rectum followed by additional 5mm 3D expansion to PTV, i.e. ∼1cm). All trials were planned to total dose 7920 cGy via IMRT. Evaluation and comparison was made using the following criteria: QUANTEC constraints for bladder/rectum including analysis of low dose regions, changes in PTV volume, total control points, and maximum hot spot. Results: ∼8mm MRI expansion consistently produced the most optimal plan with lowest total control points and best bladder/rectum sparing. However, this scheme had the smallest prostate (average 22.9% reduction) and subsequent PTV volume, consistent with prior literature. ∼1cm MRI had an average PTV volume comparable to ∼8mm CT at 3.79% difference. Bladder QUANTEC constraints were on average less for the ∼1cm MRI as compared to the ∼8mm CT and observed as statistically significant with 2.64% reduction in V65. Rectal constraints appeared to follow the same trend. Case-by-case analysis showed variation in rectal V30 with MRI delineated prostate being most favorable regardless of expansion type. ∼1cm MRI and ∼8mm CT had comparable plan quality. Conclusion: MRI delineated prostate with standard expansions had the smallest PTV leading to margins that may be too tight. Bladder/rectum carveout expansion method on MRI delineated prostate was found to be superior to standard CT based methods in terms of bladder and rectal sparing while maintaining prostate coverage

  5. Land use change around protected areas: management to balance human needs and ecological function.

    Science.gov (United States)

    DeFries, Ruth; Hansen, Andrew; Turner, B L; Reid, Robin; Liu, Jianguo

    2007-06-01

    Protected areas throughout the world are key for conserving biodiversity, and land use is key for providing food, fiber, and other ecosystem services essential for human sustenance. As land use change isolates protected areas from their surrounding landscapes, the challenge is to identify management opportunities that maintain ecological function while minimizing restrictions on human land use. Building on the case studies in this Invited Feature and on ecological principles, we identify opportunities for regional land management that maintain both ecological function in protected areas and human land use options, including preserving crucial habitats and migration corridors, and reducing dependence of local human populations on protected area resources. Identification of appropriate and effective management opportunities depends on clear definitions of: (1) the biodiversity attributes of concern; (2) landscape connections to delineate particular locations with strong ecological interactions between the protected area and its surrounding landscape; and (3) socioeconomic dynamics that determine current and future use of land resources in and around the protected area.

  6. Geoelectric investigation to delineate groundwater potential and recharge zones in Suki river basin, north Maharashtra

    Indian Academy of Sciences (India)

    Gautam Gupta; S N Patil; S T Padmane; Vinit C Erram; S H Mahajan

    2015-10-01

    Suki river basin of Raver sub-division is located towards the northeastern part of Jalgaon district in Maharashtra State. The existing land use pattern of the region clearly shows that more than 60% of the area is utilized for agricultural sector. Groundwater is the major source of irrigation and domestic purposes. To assess the overall water resources development of Raver area for better environment in future, investigation was carried out with the help of geophysical indicators. Vertical electrical sounding studies were conducted at 17 stations in the study area using Wenner configuration. The study was aimed at characterizing the aquifer in the area as well as assessing its potential risk to contaminant seepage in terms of protective capacity of the overburden rock materials using Dar-Z arrouk (D-Z) parameters, viz., the transverse resistance (), longitudinal conductance (), transverse resistivity (ρ) and longitudinal resistivity (ρ). These were computed to generate the resistivity regime of freshwater-bearing formations and its movement. The central-western part of the study area reflects very good to good protective capacity rating as can be seen from the high longitudinal conductance values. The low value of the protective capacity in the eastern part is making the aquifer system in the area highly vulnerable to surface contamination. This indicates that the ground water quality may have been deteriorated in the area and borehole water samples should be randomly sampled for contaminant loads based on this analysis.

  7. Geoelectric investigation to delineate groundwater potential and recharge zones in Suki river basin, north Maharashtra

    Science.gov (United States)

    Gupta, Gautam; Patil, S. N.; Padmane, S. T.; Erram, Vinit C.; Mahajan, S. H.

    2015-10-01

    Suki river basin of Raver sub-division is located towards the northeastern part of Jalgaon district in Maharashtra State. The existing land use pattern of the region clearly shows that more than 60% of the area is utilized for agricultural sector. Groundwater is the major source of irrigation and domestic purposes. To assess the overall water resources development of Raver area for better environment in future, investigation was carried out with the help of geophysical indicators. Vertical electrical sounding studies were conducted at 17 stations in the study area using Wenner configuration. The study was aimed at characterizing the aquifer in the area as well as assessing its potential risk to contaminant seepage in terms of protective capacity of the overburden rock materials using Dar- Zarrouk (D-Z) parameters, viz., the transverse resistance ( T), longitudinal conductance ( S), transverse resistivity ( ρ t ) and longitudinal resistivity ( ρ l ). These were computed to generate the resistivity regime of freshwater-bearing formations and its movement. The central-western part of the study area reflects very good to good protective capacity rating as can be seen from the high longitudinal conductance values. The low value of the protective capacity in the eastern part is making the aquifer system in the area highly vulnerable to surface contamination. This indicates that the ground water quality may have been deteriorated in the area and borehole water samples should be randomly sampled for contaminant loads based on this analysis.

  8. Delineation of fault systems on Langeland, Denmark based on AEM data and boreholes

    DEFF Research Database (Denmark)

    Andersen, Theis Raaschou; Westergaard, Joakim Hollenbo; Pytlich, Anders

    2016-01-01

    and geoelectrical surveys. The data serve as basis for constructing 3D hydrogeological and groundwater models from which site-specific protection zones are establish. At present time dense geophysical mapping covers approximately 45 % of Denmark. Based on a dense Airborne ElectroMagnetic (AEM) survey in combination...... modelling, Fault systems....... with boreholes, three fault systems in the northern part of the island of Langeland, Denmark are mapped. Two of the fault systems were unknown prior to the mapping campaign. The two unknown fault systems are interpreted as a normal fault and graben structures, respectively. The presence of the hanging-wall block...

  9. Inter-radiotherapists variability in the tumor delineation: example of volume intercomparison in the bronchi cancer and training impact; Variabilite inter-radiotherapeutes dans la delineation tumorale: exemple d'intercomparaison de volumes dans le cancer bronchique et impact de la formation

    Energy Technology Data Exchange (ETDEWEB)

    Dewas, S.; Lacornerie, T. [Centre Oscar-Lambret, Dept. Universitaire de Radiotherapie, 59 - Lille (France); Blanchard, P.; Vautravers-dewas, C.; Pointreau, Y. [Societe Francaise des jeunes Radiotherapeutes et Oncologues (SFjRO), 75 - Paris (France); Gibon, D. [Societe Aquilab, 59 - Lille (France); Giraud, P. [Hopital Europeen Georges-Pompidou, 75 - Paris (France)

    2009-10-15

    No significant volume modification has been found after lecturing. It allows however, an adaptation to margins of expansion and shows a trend to an increase of the prescribed dose as well a decrease of the delineated volume. The good quality of the initial delineation could explain the lack of progression after the teaching. (N.C.)

  10. Garmin GPS waypoints delineating low-altitude transects over the Arctic Network of national park units and Selawik National Wildlife Refuge, Alaska, July 2013

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — GPS waypoints delineating the flight paths for low altitude transects from a Garmin GPS unit. Transects were conducted from small aircraft over the National Park...

  11. Correlating Global Precipitation Measurement satellite data with karst spring hydrographs for rapid catchment delineation

    Science.gov (United States)

    Longenecker, Jake; Bechtel, Timothy; Chen, Zhao; Goldscheider, Nico; Liesch, Tanja; Walter, Robert

    2017-05-01

    To protect karst spring water resources, catchments must be known. We have developed a method for correlating spring hydrographs with newly available, high-resolution, satellite-based Global Precipitation Measurement data to rapidly and remotely locate recharge areas. We verify the method using a synthetic comparison of ground-based rain gage data with the satellite precipitation data set. Application to karst springs is proven by correlating satellite data with hydrographs from well-known springs with published catchments in Europe and North America. Application to an unknown-catchment spring in Pennsylvania suggests distant recharge, requiring a flow path that crosses topographic divides, as well as multiple lithologies, physiographic provinces, and tectonic boundaries. Although surprising, this latter result is consistent with published geologic/geophysical, monitoring well, and stream gage data. We conclude that the method has considerable potential to improve the speed and accuracy of catchment identification and hydrodynamic characterization, with applications to water resource protection and groundwater exploration, among others.

  12. Delineation of Management Zones in Precision Agriculture by Integration of Proximal Sensing with Multivariate Geostatistics. Examples of Sensor Data Fusion

    Directory of Open Access Journals (Sweden)

    Annamaria Castrignanò

    2015-07-01

    Full Text Available Fundamental to the philosophy of Precision Agriculture (PA is the concept of matching inputs to needs. Recent research in PA has focused on use of Management Zones (MZ that are field areas characterised by homogeneous attributes in landscape and soil conditions. Proximal sensing (such as Electromagnetic Induction (EMI, Ground Penetrating Radar (GPR and X-ray fluorescence can complement direct sampling and a multisensory platform can enable us to map soil features unambiguously. Several methods of multi-sensor data analysis have been developed to determine the location of subfield areas. Modern geostatistical techniques, treating variables as continua in a joint attribute and geographic space, offer the potential to analyse such data effectively. The objective of the paper is to show the potential of multivariate geostatistics to create MZ in the perspective of PA by integrating field data from different types of sensors, describing two study cases. In particular, in the first case study, cokriging and factorial cokriging were employed to produce thematic maps of soil trace elements and to delineate homogenous zones, respectively. In the second case, a multivariate geostatistical data-fusion technique (multi collocated cokriging was applied to different geophysical sensor data (GPR and EMI, for stationary estimation of soil water content and for delineating within-field zone with different wetting degree. The results have shown that linking sensors of different type improves the overall assessment of soil and sensor data fusion could be effectively applied to delineate MZs in Precision Agriculture. However, techniques of data integration are urgently required as a result of the proliferation of data from different sources.

  13. Distinct effects of rectum delineation methods in 3D-confromal vs. IMRT treatment planning of prostate cancer

    Directory of Open Access Journals (Sweden)

    Vordermark Dirk

    2006-09-01

    Full Text Available Abstract Background The dose distribution to the rectum, delineated as solid organ, rectal wall and rectal surface, in 3D conformal (3D-CRT and intensity-modulated radiotherapy treatment (IMRT planning for localized prostate cancer was evaluated. Materials and methods In a retrospective planning study 3-field, 4-field and IMRT treatment plans were analyzed for ten patients with localized prostate cancer. The dose to the rectum was evaluated based on dose-volume histograms of 1 the entire rectal volume (DVH 2 manually delineated rectal wall (DWH 3 rectal wall with 3 mm wall thickness (DWH3 4 and the rectal surface (DSH. The influence of the rectal filling and of the seminal vesicles' anatomy on these dose parameters was investigated. A literature review of the dose-volume relationship for late rectal toxicity was conducted. Results In 3D-CRT (3-field and 4-field the dose parameters differed most in the mid-dose region: the DWH showed significantly lower doses to the rectum (8.7% ± 4.2% compared to the DWH3 and the DSH. In IMRT the differences between dose parameters were larger in comparison with 3D-CRT. Differences were statistically significant between DVH and all other dose parameters and between DWH and DSH. Mean doses were increased by 23.6% ± 8.7% in the DSH compared to the DVH in the mid-dose region. Furthermore, both the rectal filling and the anatomy of the seminal vesicles influenced the relationship between the dose parameters: a significant correlation of the difference between DVH and DWH and the rectal volume was seen in IMRT treatment. Discussion The method of delineating the rectum significantly influenced the dose representation in the dose-volume histogram. This effect was pronounced in IMRT treatment planning compared to 3D-CRT. For integration of dose-volume parameters from the literature into clinical practice these results have to be considered.

  14. High-risk CTV delineation for cervix brachytherapy: Application of GEC-ESTRO guidelines in Australia and New Zealand.

    Science.gov (United States)

    Vinod, Shalini K; Lim, Karen; Bell, Lauren; Veera, Jacqueline; Ohanessian, Lucy; Juresic, Ewa; Borok, Nira; Chan, Phillip; Chee, Raphael; Do, Viet; Govindarajulu, Geetha; Sridharan, Swetha; Johnson, Carol; Moses, Daniel; Van Dyk, Sylvia; Holloway, Lois

    2017-02-01

    Image-based brachytherapy for cervical cancer using MRI has been implemented in Australia and New Zealand. The aims of this study were to measure variability in High-risk CTV (HR-CTV) delineation and evaluate dosimetric consequences of this. Nine radiation oncologists, one radiation therapist and two radiologists contoured HR-CTV on 3T MRI datasets from ten consecutive patients undergoing cervical brachytherapy at a single institution. Contour comparisons were performed using the Dice Similarity Coefficient (DSC) and Mean Absolute Surface Distance (MASD). Two reference contours were created for brachytherapy planning: a Simultaneous Truth and Performance Level Estimation (STAPLE) and a consensus contour (CONSENSUS). Optimized plans (8 Gy) for both these contours were applied to individual participant's contours to assess D90 and D100 coverage of HR CTV. To compare variability in dosimetry, relative standard deviation (rSD) was calculated. Good concordance (mean DSC≥0.7, MASD≤5 mm) was achieved in 8/10 cases when compared to the STAPLE reference and 6/10 cases when compared to the CONSENSUS reference. Greatest variation was visually seen in the cranio-caudal direction. The average mean rSD across all patients was 27% and 34% for the STAPLE HR-CTV D90 and D100, respectively, and 28% and 35% for the CONSENSUS HR-CTV D90 and D100. Delineation uncertainty resulted in an average dosimetric uncertainty of ±1.5-1.6 Gy per fraction based on an 8 Gy prescribed fraction. Delineation of HR-CTV for cervical cancer brachytherapy was consistent amongst observers, suggesting similar interpretation of GEC-ESTRO guidelines. Despite the good concordance, there was dosimetric variation noted, which could be clinically significant. © 2016 The Royal Australian and New Zealand College of Radiologists.

  15. Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs

    Directory of Open Access Journals (Sweden)

    Jörger Katharina M

    2012-12-01

    Full Text Available Abstract Background Many marine meiofaunal species are reported to have wide distributions, which creates a paradox considering their hypothesized low dispersal abilities. Correlated with this paradox is an especially high taxonomic deficit for meiofauna, partly related to a lower taxonomic effort and partly to a high number of putative cryptic species. Molecular-based species delineation and barcoding approaches have been advocated for meiofaunal biodiversity assessments to speed up description processes and uncover cryptic lineages. However, these approaches show sensitivity to sampling coverage (taxonomic and geographic and the success rate has never been explored on mesopsammic Mollusca. Results We collected the meiofaunal sea-slug Pontohedyle (Acochlidia, Heterobranchia from 28 localities worldwide. With a traditional morphological approach, all specimens fall into two morphospecies. However, with a multi-marker genetic approach, we reveal multiple lineages that are reciprocally monophyletic on single and concatenated gene trees in phylogenetic analyses. These lineages are largely concordant with geographical and oceanographic parameters, leading to our primary species hypothesis (PSH. In parallel, we apply four independent methods of molecular based species delineation: General Mixed Yule Coalescent model (GMYC, statistical parsimony, Bayesian Species Delineation (BPP and Automatic Barcode Gap Discovery (ABGD. The secondary species hypothesis (SSH is gained by relying only on uncontradicted results of the different approaches (‘minimum consensus approach’, resulting in the discovery of a radiation of (at least 12 mainly cryptic species, 9 of them new to science, some sympatric and some allopatric with respect to ocean boundaries. However, the meiofaunal paradox still persists in some Pontohedyle species identified here with wide coastal and trans-archipelago distributions. Conclusions Our study confirms extensive, morphologically

  16. Delineation of tunnel valleys across the North Sea coastline, Denmark based on reflection seismic data, boreholes, TEM and Schlumberger soundings

    DEFF Research Database (Denmark)

    Andersen, Theis Raaschou; Jørdensen, Flemming; Christensen, Steen

    Buried tunnel valleys are elongated depressions eroded into the substratum during the Pleistocene glaciations. Nine such valleys are mapped on- and offshore in a 300 km2 area located at the Danish North Sea coast. The delineation of the buried valleys is based on an extensive data set consisting ......, preferred orientations, and morphology support that three of the tunnel valleys cross the North Sea coastline. It is suggested that the nine valleys were formed during at least six events that occurred through one or more pre-Weichselian glaciations...

  17. Added value of nuclear magnetic resonance logging as delineation tool in EHO context : an example from Orinoco Heavy oil belt

    Energy Technology Data Exchange (ETDEWEB)

    Cochet, F.; Mus, E. [PDVSA Petroleos de Venezuela SA, Caracas (Venezuela, Bolivarian Republic of). Petrocedeno; Marcos, J. [Baker Hughes, Houston, TX (United States)

    2009-07-01

    In preparation for the upcoming implementation of a thermal oil recovery project, an intensive delineation campaign was recently conducted in a specific area of the Junin block main field of Petrocedeno, operated by Petroleos de Venezuela SA (PDVSA) Petrocedeno joint venture. A complete acquisition program was defined in terms of conventional logging (GR, resistivity, neutron/density, sonic, formation pressure), coring, and unconventional logging with imagery logs and nuclear magnetic resonance (NMR) with the objective of delineating the field. The purpose of this paper was to show the significant added value and step forward the NMR acquisition brought in fluid and reservoir characterization. The paper described the input of standard NMR logging, including fluid characterization; petrophysical support; tool limitation; NMR gamma inversion reprocessing; methodology; and application to EOR project area. Applications for field development were also presented including application for cold and hot production development. It was concluded that the NMR is a suitable tool for fluid characterization and for improving future development of the Petrocedeno extra heavy oil field. It has the capability of identifying fluids that are poorly characterized, or not characterized, by conventional logs. 10 refs., 18 figs.

  18. Delineating Urban Fringe Area by Land Cover Information Entropy—An Empirical Study of Guangzhou-Foshan Metropolitan Area, China

    Directory of Open Access Journals (Sweden)

    Junyi Huang

    2016-05-01

    Full Text Available Rapid urbanization has caused many environmental problems, such as the heat island effect, intensifying air pollution, pollution from runoff, loss of wildlife habitat, etc. Accurate evaluations of these problems demand an accurate delineation of the spatial extent of the urban fringe. Conceptual and analytical ambiguity of the urban fringe and a general lack of consensus among researchers have made its measurement very difficult. This study reports a compound and reliable method to delineate the urban fringe area using a case study. Based on the 'fringe effect' theory in landscape ecology, the existing land cover information entropy model for defining the urban fringe is renewed by incorporating scale theory, cartography and urban geography theory. Results show that the urban fringe area of Guangzhou and Foshan metropolitan area covers an area of 2031 km2, and it occupies over 31% of the total study area. Result evaluation by industry structure data shows satisfactory correspondence with different land cover types. This paper reports the method and outcome of an attempt to provide an objective, repeatable and generally applicable method for mapping its spatial extent from remote sensing imageries, and could be beneficial to relevant urban studies and urban fringe management projects.

  19. How Useful Is Electroencephalography in the Diagnosis of Autism Spectrum Disorders and the Delineation of Subtypes: A Systematic Review

    Directory of Open Access Journals (Sweden)

    Oana Gurau

    2017-07-01

    Full Text Available Autism spectrum disorders (ASD are thought to be associated with abnormal neural connectivity. Presently, neural connectivity is a theoretical construct that cannot be easily measured. Research in network science and time series analysis suggests that neural network structure, a marker of neural activity, can be measured with electroencephalography (EEG. EEG can be quantified by different methods of analysis to potentially detect brain abnormalities. The aim of this review is to examine evidence for the utility of three methods of EEG signal analysis in the ASD diagnosis and subtype delineation. We conducted a review of literature in which 40 studies were identified and classified according to the principal method of EEG analysis in three categories: functional connectivity analysis, spectral power analysis, and information dynamics. All studies identified significant differences between ASD patients and non-ASD subjects. However, due to high heterogeneity in the results, generalizations could not be inferred and none of the methods alone are currently useful as a new diagnostic tool. The lack of studies prevented the analysis of these methods as tools for ASD subtypes delineation. These results confirm EEG abnormalities in ASD, but as yet not sufficient to help in the diagnosis. Future research with larger samples and more robust study designs could allow for higher sensitivity and consistency in characterizing ASD, paving the way for developing new means of diagnosis.

  20. A circumscribing active contour model for delineation of nuclei and membranes of megakaryocytes in bone marrow trephine biopsy images

    Science.gov (United States)

    Song, Tzu-Hsi; Sanchez, Victor; EIDaly, Hesham; Rajpoot, Nasir M.

    2015-03-01

    The assessment of megakaryocytes (MKs) in bone marrow trephine images is an important step in the classification of different subtypes of myeloproliferative neoplasms (MPNs). In general, bone marrow trephine images include several types of cells mixed together, which make it quite difficult to visually identify MKs. In order to aid hematopathologists in the identification and study of MKs, we develop an image processing framework with supervised machine learning approaches and a novel circumscribing active contour model to identify potential MKs and then to accurately delineate the corresponding nucleus and membrane. Specifically, a number of color and texture features are used in a nave Bayesian classifier and an Adaboost classifier to locate the regions with a high probability of depicting MKs. A region-based active contour is used on the candidate MKs to accurately delineate the boundaries of nucleus and membrane. The proposed circumscribing active contour model employs external forces not only based on pixel intensities, but also on the probabilities of depicting MKs as computed by the classifiers. Experimental results suggest that the machine learning approach can detect potential MKs with an accuracy of more than 75%. When our circumscribing active contour model is employed on the candidate MKs, the nucleus and membrane boundaries are segmented with an accuracy of more than 80% as measured by the Dice similarity coefficient. Compared to traditional region-based active contours, the use of additional external forces based on the probability of depicting MKs improves segmentation performance and computational time by an average 5%.

  1. Research Techniques Made Simple: Noninvasive Imaging Technologies for the Delineation of Basal Cell Carcinomas.

    Science.gov (United States)

    Que, Syril Keena T

    2016-04-01

    In this article we discuss the development of noninvasive imaging modalities to help delineate tumor margins of basal cell carcinomas in the setting of Mohs micrographic surgery. A review of the available literature reveals that dermoscopy can help delineate basal cell carcinomas before surgical removal but that it has no benefit over clinical inspection in reducing the number of Mohs stages. In contrast, fluorescence confocal microscopy has a sensitivity of 88-96% and specificity of 89-99% for the detection of basal cell carcinomas and can potentially serve as a rapid means for tumor evaluation on ex vivo specimens. Optical coherence tomography has shown some success in the presurgical evaluation of tumor margins in vivo, before surgical excision. With ongoing developments in device portability, speed of image retrieval, and image resolution, these technologies are likely to gain traction in cutaneous oncology research and practice. It is therefore important for dermatology clinicians and researchers to understand the mechanisms, principal uses, advantages, and limitations of each device.

  2. A microbial fuel cell in contaminated ground delineated by electrical self-potential and normalized induced polarization data

    Science.gov (United States)

    Doherty, R.; Kulessa, B.; Ferguson, A. S.; Larkin, M. J.; Kulakov, L. A.; Kalin, R. M.

    2010-09-01

    There is a growing interest in the use of geophysical methods to aid investigation and monitoring of complex biogeochemical environments, for example delineation of contaminants and microbial activity related to land contamination. We combined geophysical monitoring with chemical and microbiological analysis to create a conceptual biogeochemical model of processes around a contaminant plume within a manufactured gas plant site. Self-potential, induced polarization and electrical resistivity techniques were used to monitor the plume. We propose that an exceptionally strong (>800 mV peak to peak) dipolar SP anomaly represents a microbial fuel cell operating in the subsurface. The electromagnetic and electrical geophysical data delineated a shallow aerobic perched water body containing conductive gasworks waste which acts as the abiotic cathode of microbial fuel cell. This is separated from the plume below by a thin clay layer across the site. Microbiological evidence suggests that degradation of organic contaminants in the plume is dominated by the presence of ammonium and its subsequent degradation. We propose that the degradation of contaminants by microbial communities at the edge of the plume provides a source of electrons and acts as the anode of the fuel cell. We hypothesize that ions and electrons are transferred through the clay layer that was punctured during the trial pitting phase of the investigation. This is inferred to act as an electronic conductor connecting the biologically mediated anode to the abiotic cathode. Integrated electrical geophysical techniques appear well suited to act as rapid, low cost sustainable tools to monitor biodegradation.

  3. Vertical electrical sounding to delineate the potential aquifer zones for drinking water in Niamey city, Niger, Africa

    Indian Academy of Sciences (India)

    Joy Choudhury; K Lohith Kumar; E Nagaiah; S Sonkamble; Shakeel Ahmed; Venay Kumar

    2017-08-01

    Niger is a landlocked African country and the only source of surface water is the Niger River which flows in the western part of Niger and only few villages near to the river gets benefited from it, leaving most of the areas dependent on groundwater solely. The groundwater resources in Niger are mainly used for drinking, livestock and domestic needs. It can be observed that the water exploitation is minimal there due to several factors like undeveloped areas, less population, limited wells, rain-fed irrigation, etc. The delineation of potential aquifer zones is an important aspect for groundwater prospecting. Hence, the direct current (DC) resistivity soundings method also known as vertical electrical sounding (VES) is one of the most applied geophysical techniques for groundwater prospecting that was used in the capital city, Niamey of Niger. Twelve VES surveys, each of AB spacing 400 m were carried out in lateritic and granitic rock formations with a view to study the layer response and to delineate the potential zones. Potential aquifer zones were at shallow depth ranging from 10 to 25 m for the drilled borehole depth of 80–85 m in every village. Analysis of the result showed a good correlation between the acquired data and the lithologs.

  4. Delineating tectonic units beneath the Donbas Fold Belt using scale lengths estimated from DOBRE 2000/2001 deep reflection data

    Science.gov (United States)

    Carpentier, S. F. A.; Roy-Chowdhury, K.; Stephenson, R. A.; Stovba, S.

    2009-10-01

    A novel statistical analysis, which augments conventional interpretation of deep seismic reflection/refraction data, is applied to the DOBRE 2000/2001 reflection profile. The goal is to improve delineation of the lithosphere in terms of lithotectonic units and to compare these to existing interpretations. After a successful validation of the method using synthetic data, stochastic parameters estimated from windowed average lateral autocorrelations in the DOBRE data are compiled in a two-dimensional profile of von Karman-type causative reflectivity. These estimates in terms of lateral correlation lengths and power law exponents are accompanied by associated uncertainties. Given its low uncertainties, the lateral correlation length ax turns out to be a robust delineator. The profile of ax reveals systematic spatial variations in the lithospheric fabric below the Donbas Fold Belt. As in earlier interpretations based upon conventional processing of reflection/refraction data, both the sedimentary basin and Moho discontinuity stand out clearly, as well as a region indicating massive vertical intrusion in the crust from upper mantle sills and ultramafic underplating of the lower crust. Notable differences with conventional interpretations include the number and extent of supra-Moho rift pillow structures, the lack of imaging a crust-cutting dislocation feature and a laterally disturbed uppermost mantle. Von Karman lateral correlation length provides new independent information at a scale between velocity models from wide-angle reflection/refraction data and line drawings from near vertical reflections and provides new insights and understanding of lithospheric evolution.

  5. Supraclavicular and infraclavicular lymph node delineation in breast cancer patients: a proposal deriving from a comparative study.

    Science.gov (United States)

    Cucciarelli, Francesca; Kirova, Youlia M; Palumbo, Isabella; Aristei, Cynthia

    2015-01-01

    Current advances in radiotherapy for breast cancer require knowledge of the anatomy of irradiated areas to minimize geographic miss and spare organs at risk. This study aimed at defining a contouring approach for supraclavicular (SC) and infraclavicular (IC) nodes after mastectomy or conservative surgery in patients with breast cancer. In 15 patients, SC and IC nodes were contoured on computed tomography slices according to Madu et al and Dijkema et al. After analyzing relapse sites, as reported by Reed et al, our approach was defined. The 3 methods were compared in all patients, quantifying differences in contours by percentage overlap (PO). In our approach, SC node delineation is similar to Madu et al in the ventral and medial landmarks, but includes the lateral SC nodes described by Dijkema et al. The lateral landmarks are the scalenus anterior and medius muscle lateral border and the clavicle. Dorsal boundaries are the scalenus anterior and medius muscle ventral and lateral surfaces and the subclavian artery ventral border. In IC node delineation, major differences emerged in cranial and dorsal limits which, in our approach, are the pectoralis minor muscle upper edge and the subclavian axillary artery ventral side. Our mean and median volumes and POs were between the other 2 methods. This study contributes to standardizing draining node contouring, so as to reduce variability and minimize geographic miss.

  6. Delineating sampling procedures: Pedagogical significance of analysing sampling descriptions and their justifications in TESL experimental research reports

    Directory of Open Access Journals (Sweden)

    Jason Miin-Hwa Lim

    2011-04-01

    Full Text Available Teaching second language learners how to write research reports constitutes a crucial component in programmes on English for Specific Purposes (ESP in institutions of higher learning. One of the rhetorical segments in research reports that merit attention has to do with the descriptions and justifications of sampling procedures. This genre-based study looks into sampling delineations in the Method-related sections of research articles on the teaching of English as a second language (TESL written by expert writers and published in eight reputed international refereed journals. Using Swales’s (1990 & 2004 framework, I conducted a quantitative analysis of the rhetorical steps and a qualitative investigation into the language resources employed in delineating sampling procedures. This investigation has considerable relevance to ESP students and instructors as it has yielded pertinent findings on how samples can be appropriately described to meet the expectations of dissertation examiners, reviewers, and supervisors. The findings of this study have furnished insights into how supervisors and instructors can possibly teach novice writers ways of using specific linguistic mechanisms to lucidly describe and convincingly justify the sampling procedures in the Method sections of experimental research reports.

  7. Integrated seismic stochastic inversion and multi-attributes to delineate reservoir distribution: Case study MZ fields, Central Sumatra Basin

    Science.gov (United States)

    Haris, A.; Novriyani, M.; Suparno, S.; Hidayat, R.; Riyanto, A.

    2017-07-01

    This study presents the integration of seismic stochastic inversion and multi-attributes for delineating the reservoir distribution in term of lithology and porosity in the formation within depth interval between the Top Sihapas and Top Pematang. The method that has been used is a stochastic inversion, which is integrated with multi-attribute seismic by applying neural network Probabilistic Neural Network (PNN). Stochastic methods are used to predict the probability mapping sandstone as the result of impedance varied with 50 realizations that will produce a good probability. Analysis of Stochastic Seismic Tnversion provides more interpretive because it directly gives the value of the property. Our experiment shows that AT of stochastic inversion provides more diverse uncertainty so that the probability value will be close to the actual values. The produced AT is then used for an input of a multi-attribute analysis, which is used to predict the gamma ray, density and porosity logs. To obtain the number of attributes that are used, stepwise regression algorithm is applied. The results are attributes which are used in the process of PNN. This PNN method is chosen because it has the best correlation of others neural network method. Finally, we interpret the product of the multi-attribute analysis are in the form of pseudo-gamma ray volume, density volume and volume of pseudo-porosity to delineate the reservoir distribution. Our interpretation shows that the structural trap is identified in the southeastern part of study area, which is along the anticline.

  8. Vertical electrical sounding to delineate the potential aquifer zones for drinking water in Niamey city, Niger, Africa

    Science.gov (United States)

    Choudhury, Joy; Kumar, K. Lohith; Nagaiah, E.; Sonkamble, S.; Ahmed, Shakeel; Kumar, Venay

    2017-08-01

    Niger is a landlocked African country and the only source of surface water is the Niger River which flows in the western part of Niger and only few villages near to the river gets benefited from it, leaving most of the areas dependent on groundwater solely. The groundwater resources in Niger are mainly used for drinking, livestock and domestic needs. It can be observed that the water exploitation is minimal there due to several factors like undeveloped areas, less population, limited wells, rain-fed irrigation, etc. The delineation of potential aquifer zones is an important aspect for groundwater prospecting. Hence, the direct current (DC) resistivity soundings method also known as vertical electrical sounding (VES) is one of the most applied geophysical techniques for groundwater prospecting that was used in the capital city, Niamey of Niger. Twelve VES surveys, each of AB spacing 400 m were carried out in lateritic and granitic rock formations with a view to study the layer response and to delineate the potential zones. Potential aquifer zones were at shallow depth ranging from 10 to 25 m for the drilled borehole depth of 80-85 m in every village. Analysis of the result showed a good correlation between the acquired data and the lithologs.

  9. Influence of experience and qualification on PET-based target volume delineation. When there is no expert - ask your colleague

    Energy Technology Data Exchange (ETDEWEB)

    Doll, C.; Grosu, A.L.; Nestle, U. [University Medical Center Freiburg, Radiation Oncology Department, Freiburg/Breisgau (Germany); Duncker-Rohr, V. [University Medical Center Freiburg, Radiation Oncology Department, Freiburg/Breisgau (Germany); Ortenau Clinical Center Offenburg, Radiation Oncology Department, Offenburg (Germany); Ruecker, G. [University of Freiburg, Institute of Medical Biometry und Medical Informatics, Freiburg (Germany); Mix, M. [University Medical Center Freiburg, Nuclear Medicine Department, Freiburg (Germany); MacManus, M. [University of Melbourne, The Sir Peter MacCallum Department of Oncology, Melbourne (Australia); Ruysscher, D. de [University Hospital Leuven/KU Leuven, Department of Radiation Oncology, Leuven (Belgium); Vogel, W. [Antoni van Leeuwenhoek Hospital, Department of Nuclear Medicine, The Netherlands Cancer Institute, Amsterdam (Netherlands); Eriksen, J.G. [Odense University Hospital, Department of Oncology, Odense (Denmark); Oyen, W. [Radboud University Nijmegen Medical Center, Department of Nuclear Medicine, Nijmegen (Netherlands); Weber, W. [University Medical Center Freiburg, Nuclear Medicine Department, Freiburg (Germany); Memorial Sloan-Kettering Cancer Center, Department of Radiology/Molecular Imaging and Therapy Service, New York (United States)

    2014-06-15

    The integration of positron emission tomography (PET) information for target volume delineation in radiation treatment planning is routine in many centers. In contrast to automatic contouring, research on visual-manual delineation is scarce. The present study investigates the dependency of manual delineation on experience and qualification. A total of 44 international interdisciplinary observers each defined a [{sup 18}F]fluorodeoxyglucose (FDG)-PET based gross tumor volume (GTV) using the same PET/CT scan from a patient with lung cancer. The observers were ''experts'' (E; n = 3), ''experienced interdisciplinary pairs'' (EP; 9 teams of radiation oncologist (RO) + nuclear medicine physician (NP)), ''single field specialists'' (SFS; n = 13), and ''students'' (S; n = 10). Five automatic delineation methods (AM) were also included. Volume sizes and concordance indices within the groups (pCI) and relative to the experts (eCI) were calculated. E (pCI = 0.67) and EP (pCI = 0.53) showed a significantly higher agreement within the groups as compared to SFS (pCI = 0.43, p = 0.03, and p = 0.006). In relation to the experts, EP (eCI = 0.55) showed better concordance compared to SFS (eCI = 0.49) or S (eCI = 0.47). The intermethod variability of the AM (pCI = 0.44) was similar to that of SFS and S, showing poorer agreement with the experts (eCI = 0.35). The results suggest that interdisciplinary cooperation could be beneficial for consistent contouring. Joint delineation by a radiation oncologist and a nuclear medicine physician showed remarkable agreement and better concordance with the experts compared to other specialists. The relevant intermethod variability of the automatic algorithms underlines the need for further standardization and optimization in this field. (orig.) [German] Die Daten aus der Positronenemissionstomographie (PET) werden in vielen Kliniken routinemaessig zur

  10. Research on the Substation Intelligent Protection System for Operations Personnel Based on the UWB Positioning Technology

    Directory of Open Access Journals (Sweden)

    Yu Zhen

    2015-01-01

    Full Text Available In order to improve the safety of the operations personnel, the authors designed the substation intelligent operations protection system, studied the positioning technology, three-dimensional geographic information technology and other key technologies, proposed the technical solutions of the positioning base station, the positioning label and the power supply system, and then derived the technical architecture of the substation intelligent operations protection system, which consists of the infrastructure layer, the support layer, the business layer and the presentation layer. These four layers are used to achieve the task management, real-time monitoring, warning sign, area delineation, track playback and other functions.

  11. Aircraft Fire Protection Laboratory

    Data.gov (United States)

    Federal Laboratory Consortium — The Navy Aircraft Protection Laboratory provides complete test support for all Navy air vehicle fire protection systems. The facility allows for the simulation of a...

  12. Aircraft Fire Protection Laboratory

    Data.gov (United States)

    Federal Laboratory Consortium — The Navy Aircraft Protection Laboratory provides complete test support for all Navy air vehicle fire protection systems.The facility allows for the simulation of a...

  13. Robotics in Protected Cultivation

    NARCIS (Netherlands)

    Henten, van E.; Bac, C.W.; Hemming, J.; Edan, Y.

    2013-01-01

    This paper reviews robotics for protected cultivation systems. Based on a short description of the greenhouse crop production process, the current state in greenhouse mechanization and the challenges for robotics in protected cultivation are identified. Examples of current greenhouse robotics

  14. Ozone Layer Protection

    Science.gov (United States)

    ... Search Search Ozone Layer Protection Share Facebook Twitter Google+ Pinterest Contact Us Ozone Layer Protection Welcome to ... Managing Refrigerant Emissions Stationary Refrigeration and Air Conditioning Car and Other Mobile Air Conditioning GreenChill Partnership Responsible ...

  15. Tulare Basin protection plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Tulare Basin Protection Plan has been initiated by The Nature Conservancy to elucidate the problems and opportunities of natural diversity protection....

  16. Healthy Watersheds Protection

    Science.gov (United States)

    Jump to main content US EPA United States Environmental Protection Agency Search Search Healthy Watersheds Protection (HWP) Share ... live in a watershed — thus watershed condition is important to everyone. Watersheds exist at different geographic scales, ...

  17. Noise and Hearing Protection

    Science.gov (United States)

    ... ENTCareers Marketplace Find an ENT Doctor Near You Noise and Hearing Protection Noise and Hearing Protection Patient ... it is. How can I tell if a noise is dangerous? People differ in their sensitivity to ...

  18. Information protection playbook

    CERN Document Server

    Kane, Greg

    2013-01-01

    The primary goal of the Information Protection Playbook is to serve as a comprehensive resource for information protection (IP) professionals who must provide adequate information security at a reasonable cost. It emphasizes a holistic view of IP: one that protects the applications, systems, and networks that deliver business information from failures of confidentiality, integrity, availability, trust and accountability, and privacy. Using the guidelines provided in the Information Protection Playbook, security and information technology (IT) managers will learn how to

  19. Plants and ventifacts delineate late Holocene wind vectors in the Coachella Valley, USA

    Science.gov (United States)

    Griffiths, Peter G.; Webb, Robert H.; Fisher, Mark; Muth, Allan

    Strong westerly winds that emanate from San Gorgonio Pass, the lowest point between Palm Springs and Los Angeles, California, dominate aeolian transport in the Coachella Valley of the western Sonoran Desert. These winds deposit sand in coppice dunes that are critical habitat for several species, including the state and federally listed threatened species Uma inornata, a lizard. Although wind directions are generally defined in this valley, the wind field has complex interactions with local topography and becomes more variable with distance from the pass. Local, dominant wind directions are preserved by growth patterns of Larrea tridentata (creosote bush), a shrub characteristic of the hot North American deserts, and ventifacts. Exceptionally long-lived, Larrea has the potential to preserve wind direction over centuries to millennia, shaped by the abrasive pruning of windward branches and the persistent training of leeward branches. Wind direction preserved in Larrea individuals and clones was mapped at 192 locations. Compared with wind data from three weather stations, Larrea vectors effectively reflect annual prevailing winds. Ventifacts measured at 24 locations record winds 10° more westerly than Larrea and appear to reflect the direction of the most erosive winds. Based on detailed mapping of local wind directions as preserved in Larrea, only the northern half of the Mission-Morongo Creek floodplain is likely to supply sand to protected U. inornata habitat in the Willow Hole ecological reserve.

  20. Plants and ventifacts delineate late Holocene wind vectors in the Coachella Valley, USA

    Science.gov (United States)

    Griffiths, P.G.; Webb, R.H.; Fisher, M.; Muth, A.

    2009-01-01

    Strong westerly winds that emanate from San Gorgonio Pass, the lowest point between Palm Springs and Los Angeles, California, dominate aeolian transport in the Coachella Valley of the western Sonoran Desert. These winds deposit sand in coppice dunes that are critical habitat for several species, including the state and federally listed threatened species Uma inornata, a lizard. Although wind directions are generally defined in this valley, the wind field has complex interactions with local topography and becomes more variable with distance from the pass. Local, dominant wind directions are preserved by growth patterns of Larrea tridentata (creosote bush), a shrub characteristic of the hot North American deserts, and ventifacts. Exceptionally long-lived, Larrea has the potential to preserve wind direction over centuries to millennia, shaped by the abrasive pruning of windward branches and the persistent training of leeward branches. Wind direction preserved in Larrea individuals and clones was mapped at 192 locations. Compared with wind data from three weather stations, Larrea vectors effectively reflect annual prevailing winds. Ventifacts measured at 24 locations record winds 10° more westerly than Larrea and appear to reflect the direction of the most erosive winds. Based on detailed mapping of local wind directions as preserved in Larrea, only the northern half of the Mission-Morongo Creek floodplain is likely to supply sand to protected U. inornata habitat in the Willow Hole ecological reserve.

  1. Identification and functional characterization of Leishmania donovani secretory peroxidase: delineating its role in NRAMP1 regulation.

    Directory of Open Access Journals (Sweden)

    Nisha Singh

    Full Text Available Leishmania silently evades host immune system and establish in the hostile environment of host macrophage phagolysosomes. For differentiation, growth and division parasite acquires divalent cations especially iron from the host nutritive pool. Natural resistance associated with macrophage protein1 (NRAMP1, a cation transporter that effluxes out divalent cations specifically iron from phagosomal milieu to the cytosol, to create ions deprived status for pathogenic microorganisms. The mechanisms of NRAMP1 regulation are largely unknown in leishmanial infections. In the present study, we identified a secretory Leishmania donovani peroxidase (Prx that showed peroxidoxin like peroxidase activity and significantly reduced H(2O(2, O(2.(- and NO levels in LPS activated macrophages. Further, we also observed down regulated Nramp1 expression and concomitantly declined labile iron pool in activated macrophages treated with identified peroxidase. Prx also decreased levels of TNF-α, IFN-γ and IL-12 in LPS activated macrophages. These observations indicate a bifunctional protective role of secretory Prx; first it reduces redox activation of macrophages, and secondly it allows iron access to Leishmania by down regulating NRAMP1 expression.

  2. Protective Behavior in Games

    NARCIS (Netherlands)

    Fiestras-Janeiro, G.; Borm, P.E.M.; van Megen, F.J.C.

    1996-01-01

    This paper introduces the notion of protective equilibrium in the context of fin ite games in strategic form.It shows that for matrix games the set of protective equilibria equals the set of proper equilibria.Moreover, in the context of bima trix games, the notion of protective behaviour is used as

  3. Environmental Protection Agency, Protecting Children's Environmental Health

    Science.gov (United States)

    ... Agency Search Search Contact Us Share Protecting Children's Environmental Health Children are often more vulnerable to pollutants ... during development. Learn more about children's health, the environment, and what you can do. Basic Information Children ...

  4. Delineation variation of lung cancer in conformal radiotherapy among radiation oncology residents after an educational course: a prospective study; Variabilite inter-radiotherapeutes de la delineation tumorale en oncologie thoracique: exemples d'intercomparaison de delineations et impact de la formation

    Energy Technology Data Exchange (ETDEWEB)

    Dewas, S.; Lacornerie, T. [Centre Oscar-Lambret, Dept. Universitaire de Radiotherapie, 59 - Lille (France); Dewas, S.; Vautravers-Dewas, C.; Pointreau, Y.; Blanchard, P. [Societe francaise des Jeunes Radiotherapeutes Oncologues - SFJRO, Centre Antoine-Beclere, Faculte de Medecine, 75 - Paris (France); Vautravers-Dewas, C.; Pointreau, Y. [Centre Georges-Francois-Leclerc, Dept. Universitaire de Radiotherapie, 21 - Dijon (France); Pointreau, Y. [Clinique d' Oncologie Radiotherapie, centre Henry-S.-Kaplan, CHU Bretonneau, 37 - Tours (France); Denis, F.; Giraud, P. [Association pour la Formation Continue en Oncologie Radiotherapie - Afcor, Centre Antoine-Beclere, Faculte de Medecine, 75 - Paris (France); Gibon, D. [Societe Aquilab, parc Eurasante, 59 - Loos les Lille (France); Giraude, P. [Universite Paris Descartes, 75 - Paris (France); Hopital Europeen Georges Pompidou, Service d' Oncologie Radiotherapie, 75 - Paris (France)

    2010-04-15

    Purpose During the French national course of radiotherapy, delineation stations were at disposition for the residents. A comparative study of delineation and doses prescribed for a clinical case of lung carcinoma is reported before and after the completion of a theoretical education. Methods For this comparative study, 120 residents divided in 30 groups, have delineated the case before and after a lecture of radio-anatomy and a presentation of volumes and doses. The software Artiview (Aquilab SAS) was used to calculate the volume ratio (V.R.), common volume (C.V.), additional volume (A.V.), kappa (K) and overlap (O.V.) between the different volumes of interest. The expansion margins and the prescribed doses were noticed. A comparative study by a test of Student for paired series was performed. Results The G.T.V. was 89.1 cm{sup 3} for the expert. It was 103.4 cm{sup 3} (59.9-215.2 cm{sup 3}) before versus 99.5 cm{sup 3} (39.7-202.3 cm{sup 3}) after the teaching intervention for participants. For G.T.V., comparison index were respectively before and after the intervention 1.16 cm{sup 3} (0.7-2.4 cm{sup 3}) and 1.1 cm{sup 3} (0.5-2.3 cm{sup 3}) for the V.R. (p = 0.53), 78.4 cm{sup 3} (58.9-91.8 cm{sup 3}) and 76.4 cm{sup 3} (40.2-92.1 cm{sup 3}) for the C.V. (p = 0.27), 28.8 cm{sup 3} (7.1-62 cm{sup 3}) and 27.8 cm{sup 3} (9.1-59.6 cm{sup 3}) for the A.V. (p = 0.7). O.V. and K were respectively 0.58 and 0.73 cm{sup 3} before and after education. The median margin prescribed to obtain C.T.V. from G.T.V. was 6 m (5-10 mm), no change was noticed after the course. The expert prescribed a 6 mm margin. The median margin prescribed by the participants to obtain P.T.V. from C.T.V. was 7 mm (3-15 mm) before the course and 5 mm (3-15 mm) afterwards, versus 5 mm for the expert. The dose prescribed by the expert was 66 Gy on P.T.V.. The dose was 66.2 Gy (60-70 Gy) before and 66.5 Gy (64-70 Gy) after course for residents. Conclusion No significant volume modification was found

  5. Numerical distance protection

    CERN Document Server

    Ziegler, Gerhard

    2011-01-01

    Distance protection provides the basis for network protection in transmission systems and meshed distribution systems. This book covers the fundamentals of distance protection and the special features of numerical technology. The emphasis is placed on the application of numerical distance relays in distribution and transmission systems.This book is aimed at students and engineers who wish to familiarise themselves with the subject of power system protection, as well as the experienced user, entering the area of numerical distance protection. Furthermore it serves as a reference guide for s

  6. Protective relay principles

    CERN Document Server

    Sleva, Anthony F

    2009-01-01

    This title lets you improve failure detection and optimize protection. In the ever-evolving field of protective relay technology, an engineer's personal preference and professional judgment are as important to power system protection as the physical relays used to detect and isolate abnormal conditions. With invaluable insights from an experienced expert, ""Protective Relay Principles"" focuses on probable power system failure modes and the important characteristics of the protective relays used to detect these postulated failures.This book presents useful new concepts in a way that is easier

  7. Numerical differential protection

    CERN Document Server

    Ziegler, Gerhard

    2012-01-01

    Differential protection is a fast and selective method of protection against short-circuits. It is applied in many variants for electrical machines, trans?formers, busbars, and electric lines.Initially this book covers the theory and fundamentals of analog and numerical differential protection. Current transformers are treated in detail including transient behaviour, impact on protection performance, and practical dimensioning. An extended chapter is dedicated to signal transmission for line protection, in particular, modern digital communication and GPS timing.The emphasis is then pla

  8. Fire Protection Program Manual

    Energy Technology Data Exchange (ETDEWEB)

    Sharry, J A

    2012-05-18

    This manual documents the Lawrence Livermore National Laboratory (LLNL) Fire Protection Program. Department of Energy (DOE) Orders 420.1B, Facility Safety, requires LLNL to have a comprehensive and effective fire protection program that protects LLNL personnel and property, the public and the environment. The manual provides LLNL and its facilities with general information and guidance for meeting DOE 420.1B requirements. The recommended readers for this manual are: fire protection officers, fire protection engineers, fire fighters, facility managers, directorage assurance managers, facility coordinators, and ES and H team members.

  9. Applications of simulation technique on debris-flow hazard zone delineation: a case study in Hualien County, Taiwan

    Directory of Open Access Journals (Sweden)

    S. M. Hsu

    2010-03-01

    Full Text Available Debris flows pose severe hazards to communities in mountainous areas, often resulting in the loss of life and property. Helping debris-flow-prone communities delineate potential hazard zones provides local authorities with useful information for developing emergency plans and disaster management policies. In 2003, the Soil and Water Conservation Bureau of Taiwan proposed an empirical model to delineate hazard zones for all creeks (1420 in total with potential of debris flows and utilized the model to help establish a hazard prevention system. However, the model does not fully consider hydrologic and physiographical conditions for a given creek in simulation. The objective of this study is to propose new approaches that can improve hazard zone delineation accuracy and simulate hazard zones in response to different rainfall intensity. In this study, a two-dimensional commercial model FLO-2D, physically based and taking into account the momentum and energy conservation of flow, was used to simulate debris-flow inundated areas.

    Sensitivity analysis with the model was conducted to determine the main influence parameters which affect debris flow simulation. Results indicate that the roughness coefficient, yield stress and volumetric sediment concentration dominate the computed results. To improve accuracy of the model, the study examined the performance of the rainfall-runoff model of FLO-2D as compared with that of the HSPF (Hydrological Simulation Program Fortran model, and then the proper values of the significant parameters were evaluated through the calibration process. Results reveal that the HSPF model has a better performance than the FLO-2D model at peak flow and flow recession period, and the volumetric sediment concentration and yield stress can be estimated by the channel slope. The validation of the model for simulating debris-flow hazard zones has been confirmed by a comparison of field evidence from historical debris

  10. Implications of different digital elevation models and preprocessing techniques to delineate debris flow inundation hazard zones in El Salvador

    Science.gov (United States)

    Anderson, E. R.; Griffin, R.; Irwin, D.

    2013-12-01

    Heavy rains and steep, volcanic slopes in El Salvador cause numerous landslides every year, posing a persistent threat to the population, economy and environment. Although potential debris inundation hazard zones have been delineated using digital elevation models (DEMs), some disparities exist between the simulated zones and actual affected areas. Moreover, these hazard zones have only been identified for volcanic lahars and not the shallow landslides that occur nearly every year. This is despite the availability of tools to delineate a variety of landslide types (e.g., the USGS-developed LAHARZ software). Limitations in DEM spatial resolution, age of the data, and hydrological preprocessing techniques can contribute to inaccurate hazard zone definitions. This study investigates the impacts of using different elevation models and pit filling techniques in the final debris hazard zone delineations, in an effort to determine which combination of methods most closely agrees with observed landslide events. In particular, a national DEM digitized from topographic sheets from the 1970s and 1980s provide an elevation product at a 10 meter resolution. Both natural and anthropogenic modifications of the terrain limit the accuracy of current landslide hazard assessments derived from this source. Global products from the Shuttle Radar Topography Mission (SRTM) and the Advanced Spaceborne Thermal Emission and Reflection Radiometer Global DEM (ASTER GDEM) offer more recent data but at the cost of spatial resolution. New data derived from the NASA Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) in 2013 provides the opportunity to update hazard zones at a higher spatial resolution (approximately 6 meters). Hydrological filling of sinks or pits for current hazard zone simulation has previously been achieved through ArcInfo spatial analyst. Such hydrological processing typically only fills pits and can lead to drastic modifications of original elevation values

  11. Theory of vibration protection

    CERN Document Server

    Karnovsky, Igor A

    2016-01-01

    This text is an advancement of the theory of vibration protection of mechanical systems with lumped and distributed parameters. The book offers various concepts and methods of solving vibration protection problems, discusses the advantages and disadvantages of different methods, and the fields of their effective applications. Fundamental approaches of vibration protection, which are considered in this book, are the passive, parametric and optimal active vibration protection. The passive vibration protection is based on vibration isolation, vibration damping and dynamic absorbers. Parametric vibration protection theory is based on the Shchipanov-Luzin invariance principle. Optimal active vibration protection theory is based on the Pontryagin principle and the Krein moment method. The book also contains special topics such as suppression of vibrations at the source of their occurrence and the harmful influence of vibrations on humans. Numerous examples, which illustrate the theoretical ideas of each chapter, ar...

  12. Improved non-calcified plaque delineation on coronary CT angiography by sonogram-affirmed iterative reconstruction with different filter strength and relationship with BMI.

    Science.gov (United States)

    Zhao, Lei; Plank, Fabian; Kummann, Moritz; Burghard, Philipp; Klauser, Andrea; Dichtl, Wolfgang; Feuchtner, Gudrun

    2015-04-01

    To prospectively compare non-calcified plaque delineation and image quality of coronary computed tomography angiography (CCTA) obtained with sinogram-affirmed iterative reconstruction (IR) with different filter strengths and filtered back projection (FBP). A total of 57 patients [28.1% females; body mass index (BMI) 29.2±6.5 kg/m(2)] were investigated. CCTA was performed using 128-slice dual-source CT. Images were reconstructed with standard FBP and sinogram-affirmed IR using different filter strength (IR-2, IR-3, IR-4) (SAFIRE, Siemens, Germany). Image quality of CCTA and a non-calcified plaque outer border delineation score were evaluated by using a 5-scale score: from 1= poor to 5= excellent. Image noise, contrast-to-noise ratio (CNR) of aortic root, left main (LM) and right coronary artery, and the non-calcified plaque delineation were quantified and compared among the 4 image reconstructions, and were compared between different BMI groups (BMI BMI groups within same reconstruction (all P>0.05). Significant differences in image quality and plaque delineation scores among different image reconstructions both in low and high BMI groups (all PBMI is increasing. Importantly, 18% of non-calcified plaques were missed with FBP. IR-4 shows the best image quality score and plaque delineation score among the different IR-filter strength.

  13. Automated Burned Area Delineation Using IRS AWiFS satellite data

    Science.gov (United States)

    Singhal, J.; Kiranchand, T. R.; Rajashekar, G.; Jha, C. S.

    2014-12-01

    India is endowed with a rich forest cover. Over 21% of country's area is covered by forest of varied composition and structure. Out of 67.5 million ha of Indian forests, about 55% of the forest cover is being subjected to fires each year, causing an economic loss of over 440 crores of rupees apart from other ecological effects. Studies carried out by Forest Survey of India reveals that on an average 53% forest cover of the country is prone to fires and 6.17% of the forests are prone to severe fire damage. Forest Survey of India in a countrywide study in 1995 estimated that about 1.45 million hectares of forest are affected by fire annually. According to Forest Protection Division of the Ministry of Environment and Forest (GOI), 3.73 million ha of forests are affected by fire annually in India. Karnataka is one of the southern states of India extending in between latitude 110 30' and 180 25' and longitudes 740 10' and 780 35'. As per Forest Survey of India's State of Forest Report (SFR) 2009, of the total geographic area of 191791sq.km, the state harbors 38284 sq.km of recorded forest area. Major forest types occurring in the study area are tropical evergreen and semi-evergreen, tropical moist and dry deciduous forests along with tropical scrub and dry grasslands. Typical forest fire season in the study area is from February-May with a peak during March-April every year, though sporadic fire episodes occur in other parts of the year sq.km, the state harbors 38284 sq.km of recorded forest area. Major forest types occurring in the study area are tropical evergreen and semi-evergreen, tropical moist and dry deciduous forests along with tropical scrub and dry grasslands. Significant area of the deciduous forests, scrub and grasslands is prone to recurrent forest fires every year. In this study we evaluate the feasibility of burned area mapping over a large area (Karnataka state, India) using a semi-automated detection algorithm applied to medium resolution multi

  14. Delineation of a cellular hierarchy in lung cancer reveals an oncofetal antigen expressed on tumor-initiating cells.

    Science.gov (United States)

    Damelin, Marc; Geles, Kenneth G; Follettie, Maximillian T; Yuan, Ping; Baxter, Michelle; Golas, Jonathon; DiJoseph, John F; Karnoub, Maha; Huang, Shuguang; Diesl, Veronica; Behrens, Carmen; Choe, Sung E; Rios, Carol; Gruzas, Janet; Sridharan, Latha; Dougher, Maureen; Kunz, Arthur; Hamann, Philip R; Evans, Deborah; Armellino, Douglas; Khandke, Kiran; Marquette, Kimberly; Tchistiakova, Lioudmila; Boghaert, Erwin R; Abraham, Robert T; Wistuba, Ignacio I; Zhou, Bin-Bing S

    2011-06-15

    Poorly differentiated tumors in non-small cell lung cancer (NSCLC) have been associated with shorter patient survival and shorter time to recurrence following treatment. Here, we integrate multiple experimental models with clinicopathologic analysis of patient tumors to delineate a cellular hierarchy in NSCLC. We show that the oncofetal protein 5T4 is expressed on tumor-initiating cells and associated with worse clinical outcome in NSCLC. Coexpression of 5T4 and factors involved in the epithelial-to-mesenchymal transition were observed in undifferentiated but not in differentiated tumor cells. Despite heterogeneous expression of 5T4 in NSCLC patient-derived xenografts, treatment with an anti-5T4 antibody-drug conjugate resulted in complete and sustained tumor regression. Thus, the aggressive growth of heterogeneous solid tumors can be blocked by therapeutic agents that target a subpopulation of cells near the top of the cellular hierarchy.

  15. Delineating mid- and low-level water vapor patterns in pre-convective environments using VAS moisture channels

    Science.gov (United States)

    Petersen, R. A.; Uccellini, L. W.; Mostek, A.; Keyser, D. A.

    1984-01-01

    Infrared and visible imagery from VAS are used to delineate mid- and lower-tropospheric moisture fields for a variety of severe storm cases in the southern and central United States. The ability of sequences of images to isolate areas of large negative vertical moisture gradients and apparent convective instability prior to the onset of convective storms is assessed. A variety of image combination procedures are used to deduce the stability fields which are then compared with the available radiosonde data. The results for several severe storm cases indicate that VAS can detect mid- and low-level mesoscale water vapor fields as distinct radiometric signals. The VAS imagery shows a strong tendency for thunderstorms to develop along the edges of bands of midlevel dryness as they overtake either preexisting or developing low-level moisture maxima. Image sequences depict the speed with which deep moist and dry layers can develop and move.

  16. Crop identification for the delineation of irrigated regions under scarce data conditions: a new approach based on chaos theory

    Science.gov (United States)

    Mangiarotti, S.; Muddu, S.; Sharma, A. K.; Corgne, S.; Ruiz, L.; Hubert-Moy, L.

    2015-12-01

    Groundwater is one of the main water reservoirs used for irrigation in regions of scarce water resources. For this reason, crop irrigation is expected to have a direct influence on this reservoir. To understand the time evolution of the groundwater table and its storage changes, it is important to delineate irrigated crops, whose evaporative demand is relatively higher. Such delineation may be performed based on classical classification approaches using optical remote sensing. However, it remains a difficult problem in regions where plots do not exceed a few hectares and exhibit a very heterogeneous pattern with multiple crops. This difficulty is emphasized in South India where two or three months of cloudy conditions during the monsoon period can hide crop growth during the year. An alternative approach is introduced here that takes advantage of such scarce signal. Ten different crops are considered in the present study. A bank of crop models is first established based on the global modeling technique [1]. These models are then tested using original time series (from which models were obtained) in order to evaluate the information that can be deduced from these models in an inverse approach. The approach is then tested on an independent data set and is finally applied to a large ensemble of 10,000 time series of plot data extracted from the Berambadi catchment (AMBHAS site) part of the Kabini River basin CZO, South India. Results show that despite the important two-month gap in satellite observations in the visible band, interpolated vegetation index remains an interesting indicator for identification of crops in South India. [1] S. Mangiarotti, R. Coudret, L. Drapeau, & L. Jarlan, Polynomial search and global modeling: Two algorithms for modeling chaos, Phys. Rev. E, 86(4), 046205 (2012).

  17. The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha.

    Directory of Open Access Journals (Sweden)

    James T Harper

    Full Text Available BACKGROUND: For the majority of microbial eukaryotes (protists, algae, there is no clearly superior species concept that is consistently applied. In the absence of a practical biological species concept, most species and genus level delineations have historically been based on morphology, which may lead to an underestimate of the diversity of microbial eukaryotes. Indeed, a growing body of molecular evidence, such as barcoding surveys, is beginning to support the conclusion that significant cryptic species diversity exists. This underestimate of diversity appears to be due to a combination of using morphology as the sole basis for assessing diversity and our inability to culture the vast majority of microbial life. Here we have used molecular markers to assess the species delineations in two related but morphologically distinct genera of uncultivated symbionts found in the hindgut of termites. METHODOLOGY/PRINCIPAL FINDINGS: Using single-cell isolation and environmental PCR, we have used a barcoding approach to characterize the diversity of Coronympha and Metacoronympha symbionts in four species of Incisitermes termites, which were also examined using scanning electron microscopy and light microcopy. Despite the fact that these genera are significantly different in morphological complexity and structural organisation, we find they are two life history stages of the same species. At the same time, we show that the symbionts from different termite hosts show an equal or greater level of sequence diversity than do the hosts, despite the fact that the symbionts are all classified as one species. CONCLUSIONS/SIGNIFICANCE: The morphological information used to describe the diversity of these microbial symbionts is misleading at both the genus and species levels, and led to an underestimate of species level diversity as well as an overestimate of genus level diversity. The genus 'Metacoronympha' is invalid and appears to be a life history stage of

  18. Application of GIS-based models for delineating the UAV flight region to support Search and Rescue activities

    Science.gov (United States)

    Jurecka, Miroslawa; Niedzielski, Tomasz

    2017-04-01

    The objective of the approach presented in this paper is to demonstrate a potential of using the combination of two GIS-based models - mobility model and ring model - for delineating a region above which an Unmanned Aerial Vehicle (UAV) should fly to support the Search and Rescue (SAR) activities. The procedure is based on two concepts, both describing a possible distance/path that lost person could travel from the initial planning point (being either the point last seen, or point last known). The first approach (the ring model) takes into account the crow's flight distance traveled by a lost person and its probability distribution. The second concept (the mobility model) is based on the estimated travel speed and the associated features of the geographical environment of the search area. In contrast to the ring model covering global (hence more general) SAR perspective, the mobility model represents regional viewpoint by taking into consideration local impedance. Both models working together can serve well as a starting point for the UAV flight planning to strengthen the SAR procedures. We present the method of combining the two above-mentioned models in order to delineate UAVs flight region and increase the Probability of Success for future SAR missions. The procedure is a part of a larger Search and Rescue (SAR) system which is being developed at the University of Wrocław, Poland (research project no. IP2014 032773 financed by the Ministry of Science and Higher Education of Poland). The mobility and ring models have been applied to the Polish territory, and they act in concert to provide the UAV operator with the optimal search region. This is attained in real time so that the UAV-based SAR mission can be initiated quickly.

  19. Comparison of Magnetic Resonance Imaging and Computed Tomography for Breast Target Volume Delineation in Prone and Supine Positions.

    Science.gov (United States)

    Pogson, Elise M; Delaney, Geoff P; Ahern, Verity; Boxer, Miriam M; Chan, Christine; David, Steven; Dimigen, Marion; Harvey, Jennifer A; Koh, Eng-Siew; Lim, Karen; Papadatos, George; Yap, Mei Ling; Batumalai, Vikneswary; Lazarus, Elizabeth; Dundas, Kylie; Shafiq, Jesmin; Liney, Gary; Moran, Catherine; Metcalfe, Peter; Holloway, Lois

    2016-11-15

    To determine whether T2-weighted MRI improves seroma cavity (SC) and whole breast (WB) interobserver conformity for radiation therapy purposes, compared with the gold standard of CT, both in the prone and supine positions. Eleven observers (2 radiologists and 9 radiation oncologists) delineated SC and WB clinical target volumes (CTVs) on T2-weighted MRI and CT supine and prone scans (4 scans per patient) for 33 patient datasets. Individual observer's volumes were compared using the Dice similarity coefficient, volume overlap index, center of mass shift, and Hausdorff distances. An average cavity visualization score was also determined. Imaging modality did not affect interobserver variation for WB CTVs. Prone WB CTVs were larger in volume and more conformal than supine CTVs (on both MRI and CT). Seroma cavity volumes were larger on CT than on MRI. Seroma cavity volumes proved to be comparable in interobserver conformity in both modalities (volume overlap index of 0.57 (95% Confidence Interval (CI) 0.54-0.60) for CT supine and 0.52 (95% CI 0.48-0.56) for MRI supine, 0.56 (95% CI 0.53-0.59) for CT prone and 0.55 (95% CI 0.51-0.59) for MRI prone); however, after registering modalities together the intermodality variation (Dice similarity coefficient of 0.41 (95% CI 0.36-0.46) for supine and 0.38 (0.34-0.42) for prone) was larger than the interobserver variability for SC, despite the location typically remaining constant. Magnetic resonance imaging interobserver variation was comparable to CT for the WB CTV and SC delineation, in both prone and supine positions. Although the cavity visualization score and interobserver concordance was not significantly higher for MRI than for CT, the SCs were smaller on MRI, potentially owing to clearer SC definition, especially on T2-weighted MR images. Copyright © 2016. Published by Elsevier Inc.

  20. Mapping subtrappean sediments and delineating structure with the aid of heliborne time domain electromagnetics: Case study from Kaladgi Basin, Karnataka

    Science.gov (United States)

    Sridhar, M.; Markandeyulu, A.; Chaturvedi, A. K.

    2017-01-01

    Mapping of subtrappean sediments is a complex geological problem attempted by many interpreters applying different geophysical techniques. Variations in thickness and resistivity of traps and underlying sediments, respectively, results in considerable uncertainty in the interpretation of geophysical data. It is proposed that the transient electromagnetic technique is an effective geophysical tool for delineation of the sub-trappean sediments, due to marked resistivity contrast between the Deccan trap, and underlying sediments and/or basement. The northern margin of the Kaladgi basin is covered under trap. A heliborne time domain electromagnetic survey was conducted to demarcate the basin extent and map the sub-trappean sediments. Conductivity depth transformations were used to map the interface between conductive trap and resistive 'basement'. Two resistivity contrast boundaries are picked: the first corresponds to the bottom of the shallow conductive unit interpreted as the base of the Deccan Volcanics and the second - picked at the base of a deeper subsurface conductive zone - is interpreted as the weathered paleo-surface of the crystalline basement. This second boundary can only be seen in areas where the volcanics are thin or absent, suggesting that the volcanics are masking the EM signal preventing deeper penetration. An interesting feature, which shows prominently in the EM data but less clearly imaged in the magnetic data, is observed in the vicinity of Mudhol. The surface geology interpreted from satellite imagery show Deccan trap cover around Mudhol. Modelling of TDEM data suggest the presence of synclinal basin structure. The depth of penetration of the heliborne TDEM data is estimated to be approximately 350 m for the study area. This suggests that heliborne TDEM could penetrate significant thicknesses of conductive Deccan trap cover to delineate structure below in the Bagalkot Group.

  1. A High Performance Computing Approach to Tree Cover Delineation in 1-m NAIP Imagery Using a Probabilistic Learning Framework

    Science.gov (United States)

    Basu, Saikat; Ganguly, Sangram; Michaelis, Andrew; Votava, Petr; Roy, Anshuman; Mukhopadhyay, Supratik; Nemani, Ramakrishna

    2015-01-01

    Tree cover delineation is a useful instrument in deriving Above Ground Biomass (AGB) density estimates from Very High Resolution (VHR) airborne imagery data. Numerous algorithms have been designed to address this problem, but most of them do not scale to these datasets, which are of the order of terabytes. In this paper, we present a semi-automated probabilistic framework for the segmentation and classification of 1-m National Agriculture Imagery Program (NAIP) for tree-cover delineation for the whole of Continental United States, using a High Performance Computing Architecture. Classification is performed using a multi-layer Feedforward Backpropagation Neural Network and segmentation is performed using a Statistical Region Merging algorithm. The results from the classification and segmentation algorithms are then consolidated into a structured prediction framework using a discriminative undirected probabilistic graphical model based on Conditional Random Field, which helps in capturing the higher order contextual dependencies between neighboring pixels. Once the final probability maps are generated, the framework is updated and re-trained by relabeling misclassified image patches. This leads to a significant improvement in the true positive rates and reduction in false positive rates. The tree cover maps were generated for the whole state of California, spanning a total of 11,095 NAIP tiles covering a total geographical area of 163,696 sq. miles. The framework produced true positive rates of around 88% for fragmented forests and 74% for urban tree cover areas, with false positive rates lower than 2% for both landscapes. Comparative studies with the National Land Cover Data (NLCD) algorithm and the LiDAR canopy height model (CHM) showed the effectiveness of our framework for generating accurate high-resolution tree-cover maps.

  2. Automatic Delineation of Sea-Cliff Limits Using Lidar-Derived High-Resolution DEMs in Southern California

    Science.gov (United States)

    Palaseanu, M.; Danielson, J.; Foxgrover, A. C.; Barnard, P.; Thatcher, C.; Brock, J. C.

    2014-12-01

    Seacliff erosion is a serious hazard with implications for coastal management, and is often estimated using successive hand digitized cliff tops or bases (toe) to assess cliff retreat. Traditionally the recession of the cliff top or cliff base is obtained from aerial photographs, topographic maps, or in situ surveys. Irrespective of how or what is measured to categorize cliff erosion, the position of the cliff top and cliff base is important. Habitually, the cliff top and base are hand digitized even when using high resolution lidar derived DEMs. Even if efforts were made to standardize and eliminate as much as possible any digitizing subjectivity, the delineation of cliffs is time consuming, and depends on the analyst's interpretation. We propose an automatic procedure to delineate the cliff top and base from high resolution bare-earth DEMs. The method is based on bare-earth high-resolution DEMs, generalized coastal shorelines and approximate measurements of distance between the shoreline and the cliff top. The method generates orthogonal transects and profiles with a minimum spacing equal to the DEM resolution and extracts for each profile xyz coordinates for cliff's top and toe, as well as second major positive and negative inflections (second top and toe) along the profile. The difference between the automated and digitized top and toe, respectively, is smaller than the DEM error margin for over 82% of the top points and 86% of the toe points along a stretch of coast in Del Mar, CA. The larger errors were due either to the failure to remove all vegetation from the bare-earth DEM or errors of interpretation during hand digitizing. The automatic method was further applied between Point Conception and Los Angeles Harbor, CA. This automatic method is repeatable, takes advantage of the bare-earth high-resolution, and is more efficient.

  3. A High Performance Computing Approach to Tree Cover Delineation in 1-m NAIP Imagery using a Probabilistic Learning Framework

    Science.gov (United States)

    Basu, S.; Ganguly, S.; Michaelis, A.; Votava, P.; Roy, A.; Mukhopadhyay, S.; Nemani, R. R.

    2015-12-01

    Tree cover delineation is a useful instrument in deriving Above Ground Biomass (AGB) density estimates from Very High Resolution (VHR) airborne imagery data. Numerous algorithms have been designed to address this problem, but most of them do not scale to these datasets which are of the order of terabytes. In this paper, we present a semi-automated probabilistic framework for the segmentation and classification of 1-m National Agriculture Imagery Program (NAIP) for tree-cover delineation for the whole of Continental United States, using a High Performance Computing Architecture. Classification is performed using a multi-layer Feedforward Backpropagation Neural Network and segmentation is performed using a Statistical Region Merging algorithm. The results from the classification and segmentation algorithms are then consolidated into a structured prediction framework using a discriminative undirected probabilistic graphical model based on Conditional Random Field, which helps in capturing the higher order contextual dependencies between neighboring pixels. Once the final probability maps are generated, the framework is updated and re-trained by relabeling misclassified image patches. This leads to a significant improvement in the true positive rates and reduction in false positive rates. The tree cover maps were generated for the whole state of California, spanning a total of 11,095 NAIP tiles covering a total geographical area of 163,696 sq. miles. The framework produced true positive rates of around 88% for fragmented forests and 74% for urban tree cover areas, with false positive rates lower than 2% for both landscapes. Comparative studies with the National Land Cover Data (NLCD) algorithm and the LiDAR canopy height model (CHM) showed the effectiveness of our framework for generating accurate high-resolution tree-cover maps.

  4. Interobserver variability of clinical target volume delineation in supra-diaphragmatic Hodgkin's disease: a multi-institutional experience.

    Science.gov (United States)

    Genovesi, Domenico; Cèfaro, Giampiero Ausili; Vinciguerra, Annamaria; Augurio, Antonietta; Di Tommaso, Monica; Marchese, Rita; Ricardi, Umberto; Filippi, Andrea Riccardo; Girinsky, Theodore; Di Biagio, Katiuscia; Belfiglio, Maurizio; Barbieri, Enza; Valentini, Vincenzo

    2011-06-01

    To determine interobserver variability in clinical target volume (CTV) of supra-diaphragmatic Hodgkin's lymphoma. At the 2008 AIRO (Italian Society of Radiation Oncology) Meeting, the Radiation Oncology Department of Chieti proposed a multi-institutional contouring dummy-run of two cases of early stage supra-diaphragmatic Hodgkin's lymphoma after chemotherapy. Clinical history, diagnostics, and planning CT imaging were available on Chieti's radiotherapy website (www.radioterapia.unich.it). Participating centers were requested to delineate the CTV and submit it to the coordinating center. To quantify interobserver variability of CTV delineations, the total volume, craniocaudal, laterolateral, and anteroposterior diameters were calculated. A total of 18 institutions for case A and 15 institutions for case B submitted the targets. Case A presented significant variability in total volume (range: 74.1-1,157.1 cc), craniocaudal (range: 6.5-22.5 cm; median: 16.25 cm), anteroposterior (range: 5.04-14.82 cm; median: 10.28 cm), and laterolateral diameters (range: 8.23-22.88 cm; median: 15.5 cm). Mean CTV was 464.8 cc (standard deviation: 280.5 cc). Case B presented significant variability in total volume (range: 341.8-1,662 cc), cranio-caudal (range: 8.0-28.5 cm; median: 23 cm), anteroposterior (range: 7.9-1.8 cm; median: 11.1 cm), and laterolateral diameters (range: 12.9-24.0 cm; median: 18.8 cm). Mean CTV was 926.0 cc (standard deviation: 445.7 cc). This significant variability confirms the need to apply specific guidelines to improve contouring uniformity in Hodgkin's lymphoma.

  5. Delineation of Groundwater Flow Pathway in Fractured Bedrock Using Nano-Iron Tracer Test in the Sealed Well

    Science.gov (United States)

    Chuang, Po-Yu; Chia, Yeeping; Chiu, Yung-Chia; Liou, Ya-Hsuan; Teng, Mao-Hua; Liu, Ching-Yi; Lee, Tsai-Ping

    2016-04-01

    Deterministic delineation of the preferential flow paths and their hydraulic properties are desirable for developing hydrogeological conceptual models in bedrock aquifers. In this study, we proposed using nanoscale zero-valent iron (nZVI) as a tracer to characterize the fractured connectivity and hydraulic properties. Since nZVI particles are magnetic, we designed a magnet array to attract the arriving nZVI particles in the observation well for identifying the location of incoming tracer. This novel approach was examined at two experiment wells with well hydraulic connectivity in a hydrogeological research station in the fractured aquifer. Heat-pulse flowmeter test was used to detect the vertical distribution of permeable zones in the borehole, providing the design basis of tracer test. Then, the less permeable zones in the injection well were sealed by casing to prevent the injected nZVI particles from being stagnated at the bottom hole. Afterwards, hydraulic test was implemented to examine the hydraulic connectivity between two wells. When nZVI slurry was released in the injection well, they could migrate through connected permeable fractures to the observation well. A breakthrough curve was obtained by the fluid conductivity sensor in the observation well, indicating the arrival of nZVI slurry. The iron nanoparticles that were attracted to the magnets in the observation well provide the quantitative information to locate the position of tracer inlet, which corroborates well with the depth of a permeable zone delineated by the flowmeter. Finally, the numerical method was utilized to simulate the process of tracer migration. This article demonstrates that nano-iron tracer test can be a promising approach for characterizing connectivity patterns and transmissivities of the flow paths in the fractured rock.

  6. A decision-making approach for delineating sites which are potentially contaminated by heavy metals via joint simulation.

    Science.gov (United States)

    Lin, Wei-Chih; Lin, Yu-Pin; Wang, Yung-Chieh

    2016-04-01

    This work develops a new approach for delineating sites that are contaminated by multiple soil heavy metals and applies it to a case study. First a number of contaminant sample data are transformed into multiple spatially un-correlated factors using Uniformly Weighted Exhaustive Diagonalization with Gauss iterations (U-WEDGE). Sequential Gaussian simulation (sGs) is then used to generate sets of realizations of each resultant factor. These are then transformed into sets of sGs contaminant distribution realizations, which are then used to analyze the local and spatial (global) uncertainties in the distribution and concentration of contaminants via joint simulation. Finally, Info-Gap Decision Theory (IGDT) is used to consider different monitoring and or remediation regimes based on the analysis of contaminant realization spatial uncertainty. In our case study each heavy metal contaminant was considered individually and together with all other heavy metals; as the number of heavy metals considered increased, higher critical proportion values of local probability were chosen to obtain a low global uncertainty (to provide high reliability). Info-Gap Decision Theory (IGDT) yielded the most appropriate critical proportion values which minimized information loss in terms of specific goals. When the false negative rate is set to zero, meaning that it is necessary to monitor all potentially polluted areas, the corresponding false positive rates are at least 63%, 65%, 66%, 68%, 70%, and 78% to yield robustness levels of 0.50, 0.60, 0.70, 0.80, 0.90, and 1.00 respectively. However, when the false negative rate tolerance threshold is raised to 50%, the false positive rate tolerance which yields robustness levels of 0.50, 0.60, 0.70, 0.80, 0.90 and 1.00 drop to 12%, 14%, 15%, 18%, 20%, and 39%. The case study demonstrates the effectiveness of the developed approach at making robust decisions concerning the delineation of sites contaminated by multiple heavy metals.

  7. Detailed Vertical and Lateral Delineation of Redox Zones in Contaminant Plumes Using Redox-Sensitive Tapes (RST)

    Science.gov (United States)

    Blum, P.; Oeste, F. D.; Melzer, R.; Martus, P.

    2006-12-01

    Innovative redox-sensitive tapes (RST) have been developed for a detailed vertical and lateral delineation of redox zones in contaminated aquifers. The RST have the potential to become an integral part of a data acquisition strategy for monitored natural attenuation (MNA). The tape material, consists of a 2 cm wide synthetic textile coated with reactive manganese dioxide minerals. The RST are submerged into existing monitoring wells for approximately one month. This time period is sufficient to allow for a reaction of the mineral coating with groundwater. The RST are aimed at investigating four different redox-zones in contaminated aquifers: Mn(II)-oxidizing, Mn(IV)-reducing, Fe(III)-reducing and sulfate-reducing. Two RST case studies are presented. The RST investigations on a coal tar contaminated site allowed for a precise lateral and vertical delineation of the contaminant plume using the existing monitoring well network. The RST investigations on a BTEX contaminated site yielded a good correlation of RST data with hydrochemical data at the wells sampled. In the majority of plume wells located 50 m downstream of the source area and beyond, Mn(IV)-reducing environment appeared to be prevailing. Comparing the RST data with hydrochemical data indicated evidence for the transport of transformation products with groundwater flow. The repeated application of the RST facilitated an assessment of the plume dynamics. No significant seasonal variation with respect to the redox zone distribution was observed within the contaminant plume. However, the assessment of the changes in redox conditions over a time period of 2.5 years showed that the iron-reducing zone is shrinking and the sulfate-reducing zone disappeared completely indicating that the contaminant plume might decrease in the near future. Thus, the application of the RST facilitated an assessment of the plume dynamics on a centimeter-scale without the necessity of pumping and treating contaminated groundwater.

  8. Evaluation of methods for delineating areas that contribute water to wells completed in valley-fill aquifers in Pennsylvania

    Science.gov (United States)

    Risser, Dennis W.; Madden, Thomas M.

    1994-01-01

    Valley-fill aquifers in Pennsylvania are the source of drinking water for many wells in the glaciated parts of the State and along major river valleys. These aquifers area subject to contamination because of their shallow water-table depth and highly transmissive sediments. The possibility for contamination of water-supply wells in valley-fill aquifers can be minimized by excluding activities that could contaminate areas that contribute water to supply wells. An area that contributes water to a well is identified in this report as either an area of diversion, time-of-travel area, or contributing area. The area of diversion is a projection to land surface of the valley-fill aquifer volume through which water is diverted to a well and the time-of travel area is that fraction of the area of diversion through which water moves to the well in a specified time. The contributing area, the largest of three areas, includes the area of diversion but also incorporates bedrock uplands and other area that contribute water. Methods for delineating areas of diversion and contributing areas in valley-fill aquifers, described and compared in order of increasing complexity, include fixed radius, uniform flow, analytical, semianalytical, and numerical modeling. Delineated areas are considered approximations because the hydraulic properties and boundary conditions of the real ground-water system are simplified even in the most complex numerical methods. Successful application of any of these methods depends on the investigator's understanding of the hydrologic system in and near the well field, and the limitations of the method. The hydrologic system includes not only the valley-fill aquifer but also the regional surface-water and ground-water flow systems within which the valley is situated. As shown by numerical flow simulations of a well field in the valley-fill aquifer along Marsh Creek Valley near Asaph, Pa., water from upland bedrock sources can provide nearly all the water

  9. Delineating high-density areas in spatial Poisson fields from strip-transect sampling using indicator geostatistics: application to unexploded ordnance removal.

    Science.gov (United States)

    Saito, Hirotaka; McKenna, Sean A

    2007-07-01

    An approach for delineating high anomaly density areas within a mixture of two or more spatial Poisson fields based on limited sample data collected along strip transects was developed. All sampled anomalies were transformed to anomaly count data and indicator kriging was used to estimate the probability of exceeding a threshold value derived from the cdf of the background homogeneous Poisson field. The threshold value was determined so that the delineation of high-density areas was optimized. Additionally, a low-pass filter was applied to the transect data to enhance such segmentation. Example calculations were completed using a controlled military model site, in which accurate delineation of clusters of unexploded ordnance (UXO) was required for site cleanup.

  10. Automated delineation and characterization of watersheds for more than 3,000 surface-water-quality monitoring stations active in 2010 in Texas

    Science.gov (United States)

    Archuleta, Christy-Ann M.; Gonzales, Sophia L.; Maltby, David R.

    2012-01-01

    The U.S. Geological Survey (USGS), in cooperation with the Texas Commission on Environmental Quality, developed computer scripts and applications to automate the delineation of watershed boundaries and compute watershed characteristics for more than 3,000 surface-water-quality monitoring stations in Texas that were active during 2010. Microsoft Visual Basic applications were developed using ArcGIS ArcObjects to format the source input data required to delineate watershed boundaries. Several automated scripts and tools were developed or used to calculate watershed characteristics using Python, Microsoft Visual Basic, and the RivEX tool. Automated methods were augmented by the use of manual methods, including those done using ArcMap software. Watershed boundaries delineated for the monitoring stations are limited to the extent of the Subbasin boundaries in the USGS Watershed Boundary Dataset, which may not include the total watershed boundary from the monitoring station to the headwaters.

  11. Digital database architecture and delineation methodology for deriving drainage basins, and a comparison of digitally and non-digitally derived numeric drainage areas

    Science.gov (United States)

    Dupree, Jean A.; Crowfoot, Richard M.

    2012-01-01

    The drainage basin is a fundamental hydrologic entity used for studies of surface-water resources and during planning of water-related projects. Numeric drainage areas published by the U.S. Geological Survey water science centers in Annual Water Data Reports and on the National Water Information Systems (NWIS) Web site are still primarily derived from hard-copy sources and by manual delineation of polygonal basin areas on paper topographic map sheets. To expedite numeric drainage area determinations, the Colorado Water Science Center developed a digital database structure and a delineation methodology based on the hydrologic unit boundaries in the National Watershed Boundary Dataset. This report describes the digital database architecture and delineation methodology and also presents the results of a comparison of the numeric drainage areas derived using this digital methodology with those derived using traditional, non-digital methods. (Please see report for full Abstract)

  12. Semi-automated stand delineation in Mediterranean Pinus sylvestris plantations through segmentation of LiDAR data: The influence of pulse density

    Science.gov (United States)

    Varo-Martínez, Mª Ángeles; Navarro-Cerrillo, Rafael M.; Hernández-Clemente, Rocío; Duque-Lazo, Joaquín

    2017-04-01

    Traditionally, forest-stand delineation has been assessed based on orthophotography. The application of LiDAR has improved forest management by providing high-spatial-resolution data on the vertical structure of the forest. The aim of this study was to develop and test a semi-automated algorithm for stands delineation in a plantation of Pinus sylvestris L. using LiDAR data. Three specific objectives were evaluated, i) to assess two complementary LiDAR metrics, Assmann dominant height and basal area, for the characterization of the structure of P. sylvestris Mediterranean forests based on object-oriented segmentation, ii) to evaluate the influence of the LiDAR pulse density on forest-stand delineation accuracy, and iii) to investigate the algorithmś effectiveness in the delineation of P. sylvestris stands for map prediction of Assmann dominant height and basal area. Our results show that it is possible to generate accurate P. sylvestris forest-stand segmentations using multiresolution or mean shift segmentation methods, even with low-pulse-density LiDAR - which is an important economic advantage for forest management. However, eCognition multiresolution methods provided better results than the OTB (Orfeo Tool Box) for stand delineation based on dominant height and basal area estimations. Furthermore, the influence of pulse density on the results was not statistically significant in the basal area calculations. However, there was a significant effect of pulse density on Assmann dominant height [F2,9595 = 5.69, p = 0.003].for low pulse density. We propose that the approach shown here should be considered for stand delineation in other large Pinus plantations in Mediterranean regions with similar characteristics.

  13. Delineation of target volumes and organs at risk in adjuvant radiotherapy of early breast cancer: National guidelines and contouring atlas by the Danish Breast Cancer Cooperative Group

    Energy Technology Data Exchange (ETDEWEB)

    Nielsen, Mette H. [Dept. of Oncology, Odense Univ. Hospital, Odense (Denmark)], E-mail: mette.m.nielsen@ouh.regionsyddanmark.dk; Berg, Martin [Dept. of Medical Physics, Hospital of Vejle, Vejle (Denmark); Pedersen, Anders N. [Dept. of Oncology, Rigshospitalet, Copenhagen (Denmark)] [and others

    2013-05-15

    During the past decade planning of adjuvant radiotherapy (RT) of early breast cancer has changed from two-dimensional (2D) to 3D conformal techniques. In the planning computerised tomography (CT) scan both the targets for RT and the organs at risk (OARs) are visualised, enabling an increased focus on target dose coverage and homogeneity with only minimal dose to the OARs. To ensure uniform RT in the national prospective trials of the Danish Breast Cancer Cooperative Group (DBCG), a national consensus for the delineation of clinical target volumes (CTVs) and OARs was required. Material and methods. A CT scan of a breast cancer patient after surgical breast conservation and axillary lymph node (LN) dissection was used for delineation. During multiple dummy-runs seven experienced radiation oncologists contoured all CTVs and OARs of interest in adjuvant breast RT. Two meetings were held in the DBCG Radiotherapy Committee to discuss the contouring and to approve a fi nal consensus. The Dice similarity coefficient (DSC) was used to evaluate the delineation agreement before and after the consensus. Results. The consensus delineations of CTVs and OARs are available online and a table is presented with a contouring description of the individual volumes. The consensus provides recommendations for target delineation in a standard patient both in case of breast conservation or mastectomy. Before the consensus, the average value of the DSC was modest for most volumes, but high for the breast CTV and the heart. After the consensus, the DSC increased for all volumes. Conclusion. The DBCG has provided the fi rst national guidelines and a contouring atlas of CTVs and OARs definition for RT of early breast cancer. The DSC is a useful tool in quantifying the effect of the introduction of guidelines indicating improved inter-delineator agreement. This consensus will be used by the DBCG in our prospective trials.

  14. Protection using telecommunications

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2001-07-01

    Deregulation in both the telecommunication and electric power industry, together with new telecommunication network technologies and advances in numerical protection, has resulted in the need to reconsider traditional methods of delivering tele-protection schemes and their associated bearer services. Fibre-optic technology is commonly deployed in new telecommunication networks for inter-station communication and utility-owned and public telecommunication networks from third parties are available for protection purposes. (author)

  15. PROTECTING THE PAST

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Promoting folk culture has become an important mission for some local governments, especially in ethnic minority areas Folk culture is drawing increasing attention as people's awareness of protecting their heritage has grown. But it is also evident that such protection efforts can bring economic benefits. Hubei, in central China, is one of the beneficiaries of folk culture protection. Seventeen of the 501 candidates for the

  16. Emergency Protection from Aerosols

    Energy Technology Data Exchange (ETDEWEB)

    Cristy, G.A.

    2001-11-13

    Expedient methods were developed that could be used by an average person, using only materials readily available, to protect himself and his family from injury by toxic (e.g., radioactive) aerosols. The most effective means of protection was the use of a household vacuum cleaner to maintain a small positive pressure on a closed house during passage of the aerosol cloud. Protection factors of 800 and above were achieved.

  17. Administration and environmental protection

    OpenAIRE

    Milkov, Dragan

    2013-01-01

    Environmental protection is a very important task of the state. The state in this area deals in a preventative manner, and at the same time controls the application of laws and regulations. The aim of this paper is to carry out the identification of administrative bodies dealing with environmental protection at the national, provincial and local levels. There are administrative bodies dealing directly with matters of environmental protection. On the other hand, within the scope of some admini...

  18. Cathodic Protection Model Facility

    Data.gov (United States)

    Federal Laboratory Consortium — FUNCTION: Performs Navy design and engineering of ship and submarine impressed current cathodic protection (ICCP) systems for underwater hull corrosion control and...

  19. Protecting the Amazon with protected areas.

    Science.gov (United States)

    Walker, Robert; Moore, Nathan J; Arima, Eugenio; Perz, Stephen; Simmons, Cynthia; Caldas, Marcellus; Vergara, Dante; Bohrer, Claudio

    2009-06-30

    This article addresses climate-tipping points in the Amazon Basin resulting from deforestation. It applies a regional climate model to assess whether the system of protected areas in Brazil is able to avoid such tipping points, with massive conversion to semiarid vegetation, particularly along the south and southeastern margins of the basin. The regional climate model produces spatially distributed annual rainfall under a variety of external forcing conditions, assuming that all land outside protected areas is deforested. It translates these results into dry season impacts on resident ecosystems and shows that Amazonian dry ecosystems in the southern and southeastern basin do not desiccate appreciably and that extensive areas experience an increase in precipitation. Nor do the moist forests dry out to an excessive amount. Evidently, Brazilian environmental policy has created a sustainable core of protected areas in the Amazon that buffers against potential climate-tipping points and protects the drier ecosystems of the basin. Thus, all efforts should be made to manage them effectively.

  20. Buffer moisture protection system

    Energy Technology Data Exchange (ETDEWEB)

    Ritola, J.; Peura, J. [VTT Technical Research Centre of Finland, Espoo (Finland)

    2013-11-15

    With the present knowledge, bentonite blocks have to be protected from the air relative humidity and from any moisture leakages in the environment that might cause swelling of the bentonite blocks during the 'open' installation phase before backfilling. The purpose of this work was to design the structural reference solution both for the bottom of the deposition hole and for the buffer moisture protection and dewatering system with their integrated equipment needed in the deposition hole. This report describes the Posiva's reference solution for the buffer moisture protection system and the bottom plate on basis of the demands and functional requirements set by long-term safety. The reference solution with structural details has been developed in research work made 2010-2011. The structural solution of the moisture protection system has not yet been tested in practice. On the bottom of the deposition hole a copper plate which protects the lowest bentonite block from the gathered water is installed straight to machined and even rock surface. The moisture protection sheet made of EPDM rubber is attached to the copper plate with an inflatable seal. The upper part of the moisture protection sheet is fixed to the collar structures of the lid which protects the deposition hole in the disposal tunnel. The main function of the moisture protection sheet is to protect bentonite blocks from the leaking water and from the influence of the air humidity at their installation stage. The leaking water is controlled by the dewatering and alarm system which has been integrated into the moisture protection liner. (orig.)

  1. Discussion of Environmental Protection

    Institute of Scientific and Technical Information of China (English)

    翁和毓

    2002-01-01

    Knowledge about environment issues was introduced. The influence of pollution on human beings as well as ecosystem was analyzed. And the management of environment protection and the roles that both the local government and central government should play were discussed. Finally, the legislation and supervision for environment protection were put forward.

  2. Protective Garment Ensemble

    Science.gov (United States)

    Wakefield, M. E.

    1982-01-01

    Protective garment ensemble with internally-mounted environmental- control unit contains its own air supply. Alternatively, a remote-environmental control unit or an air line is attached at the umbilical quick disconnect. Unit uses liquid air that is vaporized to provide both breathing air and cooling. Totally enclosed garment protects against toxic substances.

  3. Smart cathodic protection systems

    NARCIS (Netherlands)

    Polder, R.B.; Leggedoor, J.; Schuten, G.; Sajna, S.; Kranjc, A.

    2010-01-01

    Cathodic protection delivers corrosion protection in concrete structures exposed to aggressive environments, e.g. in de-icing salt and marine climates. Working lives of a large number of CP systems are at least more than 13 years and probably more than 25 years, provided a minimum level of maintenan

  4. Complete Rerouting Protection

    DEFF Research Database (Denmark)

    Stidsen, Thomas K.; Kjærulff, Peter

    2005-01-01

    In this paper we present a new protection method: Complete Rerouting. This is the most capacity e cient protection method for circuit switched networks and it is, to the best of our knowledge, the first time it has been described. We implement a column generation algorithm and test the performanc...

  5. Using magnetic susceptibility to facilitate more rapid, reproducible and precise delineation of hydric soils in the midwestern USA

    Science.gov (United States)

    Grimley, D.A.; Arruda, N.K.; Bramstedt, M.W.

    2004-01-01

    Standard field indicators, currently used for hydric soil delineations [USDA-NRCS, 1998. Field indicators of hydric soils in the United States, Version 4.0. In: G.W. Hurt et al. (Ed.), United States Department of Agriculture-NRCS, Fort Worth, TX], are useful, but in some cases, they can be subjective, difficult to recognize, or time consuming to assess. Magnetic susceptibility (MS) measurements, acquired rapidly in the field with a portable meter, have great potential to help soil scientists delineate and map areas of hydric soils more precisely and objectively. At five sites in Illinois (from 5 to 15 ha in area) with contrasting soil types and glacial histories, the MS values of surface soils were measured along transects, and afterwards mapped and contoured. The MS values were found to be consistently higher in well-drained soils and lower in hydric soils, reflecting anaerobic deterioration of both detrital magnetite and soil-formed ferrimagnetics. At each site, volumetric MS values were statistically compared to field indicators to determine a critical MS value for hydric soil delineation. Such critical values range between 22??10-5 and 33??10-5 SI in silty loessal or alluvial soils in Illinois, but are as high as 61??10-5 SI at a site with fine sandy soil. A higher magnetite content and slower dissolution rate in sandy soils may explain the difference. Among sites with silty parent material, the lowest critical value (22??10-5 SI) occurs in soil with low pH (4.5-5.5) since acidic conditions are less favorable to ferrimagnetic mineral neoformation and enhance magnetite dissolution. Because of their sensitivity to parent material properties and soil pH, critical MS values must be determined on a site specific basis. The MS of studied soil samples (0-5 cm depth) is mainly controlled by neoformed ultrafine ferrimagnetics and detrital magnetite concentrations, with a minor contribution from anthropogenic fly ash. Neoformed ferrimagnetics are present in all samples

  6. Effect of various methods for rectum delineation on relative and absolute dose-volume histograms for prostate IMRT treatment planning

    Energy Technology Data Exchange (ETDEWEB)

    Kusumoto, Chiaki [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan); Ohira, Shingo [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan); Department of Medical Physics and Engineering, Osaka University Graduate School of Medicine, Suita (Japan); Miyazaki, Masayoshi [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan); Ueda, Yoshihiro [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan); Department of Radiation Oncology, Graduate School of Medicine, Osaka University, Suita (Japan); Isono, Masaru [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan); Teshima, Teruki, E-mail: teshima-te@mc.pref.osaka.jp [Department of Radiation Oncology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka (Japan)

    2016-07-01

    Several reports have dealt with correlations of late rectal toxicity with rectal dose-volume histograms (DVHs) for high dose levels. There are 2 techniques to assess rectal volume for reception of a specific dose: relative-DVH (R-DVH, %) that indicates relative volume for a vertical axis, and absolute-DVH (A-DVH, cc) with its vertical axis showing absolute volume of the rectum. The parameters of DVH vary depending on the rectum delineation method, but the literature does not present any standardization of such methods. The aim of the present study was to evaluate the effects of different delineation methods on rectal DVHs. The enrollment for this study comprised 28 patients with high-risk localized prostate cancer, who had undergone intensity-modulated radiation therapy (IMRT) with the prescription dose of 78 Gy. The rectum was contoured with 4 different methods using 2 lengths, short (Sh) and long (Lg), and 2 cross sections, rectum (Rec) and rectal wall (Rw). Sh means the length from 1 cm above the seminal vesicles to 1 cm below the prostate and Lg the length from the rectosigmoid junction to the anus. Rec represents the entire rectal volume including the rectal contents and Rw the rectal volume of the area with a wall thickness of 4 mm. We compared dose-volume parameters by using 4 rectal contour methods for the same plan with the R-DVHs as well as the A-DVHs. For the high dose levels, the R-DVH parameters varied widely. The mean of V{sub 70} for Sh-Rw was the highest (19.4%) and nearly twice as high as that for Lg-Rec (10.4%). On the contrary, only small variations were observed in the A-DVH parameters (4.3, 4.3, 5.5, and 5.5 cc for Sh-Rw, Lg-Rw, Sh-Rec, and Lg-Rec, respectively). As for R-DVHs, the parameters of V{sub 70} varied depending on the rectal lengths (Sh-Rec vs Lg-Rec: R = 0.76; Sh-Rw vs Lg-Rw: R = 0.85) and cross sections (Sh-Rec vs Sh-Rw: R = 0.49; Lg-Rec vs Lg-Rw: R = 0.65). For A-DVHs, however, the parameters of Sh rectal A-DVHs hardly changed

  7. Protection of multimaterial assemblies

    Science.gov (United States)

    Mikhail, L. Zheludkevich; Silvar, Kallip; Maria, Serdechnova

    2016-01-01

    The light-weight design calls for broader utilization of multimaterial mixes (M3) in different engineering structures, especially in the transportation area. Together with joining technologies for hybrid structures, the optimization of the life cycle of such systems is an issue of prime importance. Multimaterial structures are often prone to faster degradation under service conditions because of galvanically forced electrochemical corrosion. The protection technologies traditionally used for single-material structures are not always applicable for multimaterial design because of compatibility issues and a stronger thermodynamic driving force for degradation. In this chapter different strategies for protection of multimaterials structures are briefly overviewed. The main focus is on new alternative protection systems based on combination of synergistic inhibiting mixtures introduced into protective coatings. A road map which can be followed in order to create an efficient active protection coating for hybrid structures is suggested.

  8. Introduction to Machine Protection

    CERN Document Server

    Schmidt, R

    2016-01-01

    Protection of accelerator equipment is as old as accelerator technology and was for many years related to high-power equipment. Examples are the protection of powering equipment from overheating (magnets, power converters, high-current cables), of superconducting magnets from damage after a quench and of klystrons. The protection of equipment from beam accidents is more recent, although there was one paper that discussed beam-induced damage for the SLAC linac (Stanford Linear Accelerator Center) as early as in 1967. It is related to the increasing beam power of high-power proton accelerators, to the emission of synchrotron light by electron-positron accelerators and to the increase of energy stored in the beam. Designing a machine protection system requires an excellent understanding of accelerator physics and operation to anticipate possible failures that could lead to damage. Machine protection includes beam and equipment monitoring, a system to safely stop beam operation (e.g. dumping the beam or stopping ...

  9. Lumbosacral plexus delineation, dose distribution, and its correlation with radiation-induced lumbosacral plexopathy in cervical cancer patients

    Directory of Open Access Journals (Sweden)

    Tunio M

    2014-12-01

    Full Text Available Mutahir Tunio,1 Mushabbab Al Asiri,1 Yasser Bayoumi,2 Ali Abdullah O Balbaid,1 Majed AlHameed,3 Stanciu Laura Gabriela,1 Ahmad Amir O Ali1 1Radiation Oncology, Comprehensive Cancer Center, King Fahad Medical City, Riyadh, Saudi Arabia; 2National Cancer Institute, Cairo University, Cairo, Egypt; 3Neurology, Comprehensive Cancer Center, King Fahad Medical City, Riyadh, Saudi Arabia Background: To evaluate the dose distribution to the lumbosacral plexus (LSP and its correlation with radiation-induced lumbosacral plexopathy (RILSP in patients with cervical cancer treated with intensity-modulated radiotherapy (IMRT and high-dose-rate brachytherapy.Materials and methods: After meeting eligibility criteria, 50 patients with cervical cancer were selected who were treated with IMRT and high-dose-rate brachytherapy, and the LSP was contoured. Mean volume; percentages of LSP volume absorbing 40, 50, 55, and 60 Gy (V30, V40, V50, V55, and V60 and point doses (P1, P2, P3, P4, P5, P6, P7, P8, P9, and P10; and RILSP incidence were calculated.Results: At 60 months of follow-up, four patients (8% were found to have grade 2/3 RILSP. The mean maximal LSP dose in patients with RILSP was 59.6 Gy compared with 53.9 Gy in patients without RILSP (control; P=0.04. The mean values of V40, V50, V55, and V60 in patients with RILSP versus control were 61.8% versus 52.8%, 44.4% versus 27.7%, 8.0% versus 0.3% and 1.8% versus 0%, respectively (P=0.01, 0.001, 0.001, and 0.001, respectively.Conclusion: The delineation of the LSP during IMRT planning may reduce the risk for RILSP. The mean values of V40, V50, V55, and V60 for LSP should be less than 55%, 30%, 5%, and 0.5%, respectively; however, further studies are warranted.Keywords: cervical cancer, intensity-modulated radiation therapy, lumbosacral plexus delineation, radiation-induced lumbosacral plexopathy, dosimetric analysis

  10. SU-E-J-78: Internal Target Volume Delineation for Lung Tumors in Patients Treated with Robotic Radiosurgery

    Energy Technology Data Exchange (ETDEWEB)

    Descovich, M; Pinnaduwage, D; Kirby, N; Gottschalk, A; Yom, S; Pouliot, J; Braunstein, S [UC San Francisco, San Francisco, CA (United States)

    2014-06-01

    Purpose: To compare different approaches for Internal Target Volume (ITV) delineation for patients treated with fiducial-free robotic radiosurgery for primary and metastatic lung tumors. Methods: Ten patients undergoing Lung-Optimized Treatment (LOT) for robotic radiosurgery were imaged with inhale and exhale breath-hold CT scans and 8-phase 4DCT scan. We evaluated the differences in internal target volume (ITV) delineated using three approaches: 1) maximum intensity projection (MIP) images reconstructed from 4DCT scan (ITV-MIP); 2) linear interpolation of Gross Tumor Volumes (GTV) segmented on inhale and exhale breath-hold scans (ITV-BH); 3) linear interpolation of GTV segmented on inhale and exhale phases of 4DCT scan (ITV-2Phase). All contours were independently generated by the same radiation oncologist using lung window settings. Patients had ITV-MIP volumes ranging from 1.5 to 146.9 cc (mean 36.8 cc) located in various parts of the lung. Volume overlap and matching index (MI) were calculated and compared. The MI between two volumes was defined as the ratio of their intersection to their union. MI of 1 indicates the volumes are identical; MI of 0 indicates that there is no overlap. Results: The three approaches generated very different results. The average (SD) MI for ITV-MIP and ITV-BH was 0.52 (0.24); for ITV-MIP and ITV-2Phase it was 0.69 (0.13); and for ITV-BH and ITV-2Phase was 0.57 (0.21), (ANOVA, p=0.16). Relative to the ITV-MIP, the percentage of volume overlap was 72% (26%) and 90% (7%) for ITV-BH and ITV-2Phase, respectively (t-test, p=0.05). Conclusion: Differences between ITV-BH and ITV-MIP are due to inconsistent lung filling at breath-hold and nonlinear tumor motion. Therefore, methods to check breath-hold scanning against regular patient breathing patterns should be developed. Whenever possible, ITV-BH generated by the LOT workflow should be verified by 4DCT data.

  11. Delineating management zones for precision agriculture applications: a case study on wheat in sub-tropical Brazil

    Directory of Open Access Journals (Sweden)

    Júnior Melo Damian

    2016-08-01

    Full Text Available In sub-tropical Brazil, the wheat (Triticum aestivum L. crop requires identification of pending constraints as premise for grain yield (GY increases. In this light, spatial variation of soil properties and their relationship with GY were investigated in a case study, where the delineation of homogeneous zones could lead to site-specific management in view of crop improvement. In 2012, twelve chemical and physical soil attributes, GY and the three yield components (spikes per square meters, grains per spike, grain weight were geo-referentially assessed in a 50×50 m grid in a 4.7 ha wheat field. GY exhibited a modest mean (2.61 Mg ha–1, associated with a noticeable variation (CV, 17.4%. A multiple stepwise regression of soil carbon (C and pH explained a high share of GY variation (R2, 0.83**. Maps of C, pH and GY obtained through inverse distance weighting showed the spatial trends of the three traits. C and pH clustering delineated three homogeneous zones at respective low, intermediate and high levels of C, pH, and also GY, setting the premise for a differential management of crop inputs. In particular, a significant part (21.8% of field surface featured very low GY (2.05 Mg ha–1; thus substantial yield increase could be envisaged through targeted supply of organic amendments (soil C, 14.1 g dm–3, and especially lime (soil pH, 4.92. A larger field portion (54% showed intermediate GY (2.65 Mg ha–1, C (15.3 g dm–3 and pH (5.23, deserving a lesser degree of amelioration. The remaining 24.2% of field surface exhibited the highest GY (3.16 Mg ha–1, C (17.2 g dm–3 and pH (5.46. Based on the difference between GY registered in the low vs. high zone, overcoming soil constraints could be credited with a remarkable (>50% yield increase, although further years of wheat cropping would be needed to prove the consistency of the two temporally stable soil traits, C and pH, as yield determinants. Nevertheless, this case study addressing a world

  12. SU-E-J-136: Multimodality-Image-Based Target Delineation for Dose Painting of Pancreatic Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Dalah, E; Paulson, E; Erickson, B; Li, X [Medical College of Wisconsin, Milwaukee, WI (United States)

    2014-06-01

    Purpose: Dose escalated RT may provide improved disease local-control for selected unresectable pancreatic cancer. Accurate delineation of the gross tumor volume (GTV) inside pancreatic head or body would allow safe dose escalation considering the tolerances of adjacent organs at risk (OAR). Here we explore the potential of multi-modality imaging (DCE-MRI, ADC-MRI, and FDG-PET) to define the GTV for dose painting of pancreatic cancer. Volumetric variations of DCE-MRI, ADC-MRI and FDG-PET defined GTVs were assessed in comparison to the findings on CT, and to pathology specimens for resectable and borderline reseactable cases of pancreatic cancer. Methods: A total of 19 representative patients with DCE-MRI, ADC-MRI and FDG-PET data were analyzed. Of these, 8 patients had pathological specimens. GTV, inside pancreatic head/neck, or body, were delineated on MRI (denoted GTVDCE, and GTVADC), on FDG-PET using SUV of 2.5, 40% SUVmax, and 50% SUVmax (denoted GTV2.5, GTV40%, and GTV50%). A Kruskal-Wallis test was used to determine whether significant differences existed between GTV volumes. Results: Significant statistical differences were found between the GTVs defined by DCE-MRI, ADC-MRI, and FDG-PET, with a mean and range of 4.73 (1.00–9.79), 14.52 (3.21–25.49), 22.04 (1.00–45.69), 19.10 (4.84–45.59), and 9.80 (0.32–35.21) cm3 (p<0.0001) for GTVDCE, GTVADC, GTV2.5, GTV40%, and GTV50%, respectively. The mean difference and range in the measurements of maximum dimension of GTVs based on DCE-MRI, ADC-MRI, SUV2.5, 40% SUVmax, and 50% SUVmax compared with pathologic specimens were −0.84 (−2.24 to 0.9), 0.41 (−0.15 to 2.3), 0.58 (−1.41 to 3.69), 0.66 (−0.67 to 1.32), and 0.15 (−1.53 to 2.38) cm, respectively. Conclusion: Differences exists between DCE, ADC, and PET defined target volumes for RT of pancreatic cancer. Further studies combined with pathological specimens are required to identify the optimal imaging modality and/or acquisition method to

  13. Industriousness in an imperial economy: Delineating new research on colonial connections and household labour relations in the Netherlands and the Netherlands Indies

    NARCIS (Netherlands)

    Nederveen Meerkerk, van E.J.V.

    2013-01-01

    This article delineates new research on the entangled histories of householdlabour, particularly women’s and children’s work, in the Netherlands and its colonies on Java. It offers suggestions for future empirical studies and howwe may disentangle the workings of colonial connections on labour

  14. Criteria for phytoplasma 16Sr group/subgroup delineation and the need of a platform for proper registration of new groups and subgroups

    Science.gov (United States)

    As more phytoplasmas are discovered in emerging and re-emerging plant diseases worldwide, the scheme for classification of phytoplasmas into 16S rRNA gene RFLP (16Sr) groups and subgroups is experiencing an ongoing rapid expansion. Improper delineation or designation of new groups and subgroups can...

  15. Defining the anterior nucleus of the thalamus (ANT as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Directory of Open Access Journals (Sweden)

    T. Möttönen

    2015-01-01

    Conclusions: ANT is delineated in 3 T MRI by visualization of a thin white matter lamina between ANT and other nuclear groups that lack spiking activity. Direct targeting in the anterior thalamic area is superior to indirect targeting due to extensive individual variation in the location of ANT. Without detailed imaging information, however, a single trajectory MER has little localizing value.

  16. Delineation of the neck node levels for head and neck tumors : A 2013 update. DAHANCA, EORTC, HKNPCSG, NCIC CTG, NCRI, RTOG, TROG consensus guidelines

    NARCIS (Netherlands)

    Gregoire, Vincent; Ang, Kian; Budach, Wilfried; Grau, Cai; Hamoir, Marc; Langendijk, Johannes A.; Lee, Anne; Quynh-Thu Le, [No Value; Maingon, Philippe; Nutting, Chris; O'Sullivan, Brian; Porceddu, Sandro V.; Lengele, Benoit

    In 2003, a panel of experts published a set of consensus guidelines for the delineation of the neck node levels in node negative patients (Radiother Oncol, 69: 227-36,2003). In 2006, these guidelines were extended to include the characteristics of the node positive and the post-operative neck

  17. Delineation of Culicoides species by morphology and barcode exemplified by three new species of the subgenus Culicoides (Diptera: Ceratopogonidae) from Scandinavia

    DEFF Research Database (Denmark)

    Nielsen, Søren Achim; Kristensen, Michael

    2015-01-01

    Background Culicoides biting midges (Diptera: Ceratopogonidae) cause biting nuisance to livestock and humans and are vectors of a range of pathogens of medical and veterinary importance. Despite their economic significance, the delineation and identification of species where only morphology is co...

  18. Comparison of NOAA lidar data at 1.5 and 3 meter resolutions, for adequate watershed delineation in Tift County, Georgia, USA

    Science.gov (United States)

    The USDA Southeast Watershed Research Laboratory is located in Tifton, Ga, and performs ongoing watershed research for the Tift County area, as well as surrounding counties. Current watershed delineations are based on 1972-1977, 7.5-minute USGS Quadrangle sheets, and require updating. Light Detectio...

  19. CT-based delineation of organs at risk in the head and neck region.DAHANCA, EORTC, GORTEC, HKNPCSG, NCIC CTG, NCRI, NRG Oncology and TROG consensus guidelines

    DEFF Research Database (Denmark)

    Brouwer, Charlotte L; Steenbakkers, Roel J H M; Bourhis, Jean;

    2015-01-01

    PURPOSE: The objective of this project was to define consensus guidelines for delineating organs at risk (OARs) for head and neck radiotherapy for routine daily practice and for research purposes. METHODS: Consensus guidelines were formulated based on in-depth discussions of a panel of European, ...

  20. Application of a New Robust ECG T-Wave Delineation Algorithm for the Evaluation of the Autonomic Innervation of the Myocardium

    DEFF Research Database (Denmark)

    Cesari, Matteo; Mehlsen, Jesper; Mehlsen, Anne-Birgitte

    2016-01-01

    T-wave amplitude (TWA) is a well know index of the autonomic innervation of the myocardium. However, until now it has been evaluated only manually or with simple and inefficient algorithms. In this paper, we developed a new robust single-lead electrocardiogram (ECG) T-wave delineation algorithm...

  1. Pieces-of-parts for supervoxel segmentation with global context: Application to DCE-MRI tumour delineation.

    Science.gov (United States)

    Irving, Benjamin; Franklin, James M; Papież, Bartłomiej W; Anderson, Ewan M; Sharma, Ricky A; Gleeson, Fergus V; Brady, Sir Michael; Schnabel, Julia A

    2016-08-01

    Rectal tumour segmentation in dynamic contrast-enhanced MRI (DCE-MRI) is a challenging task, and an automated and consistent method would be highly desirable to improve the modelling and prediction of patient outcomes from tissue contrast enhancement characteristics - particularly in routine clinical practice. A framework is developed to automate DCE-MRI tumour segmentation, by introducing: perfusion-supervoxels to over-segment and classify DCE-MRI volumes using the dynamic contrast enhancement characteristics; and the pieces-of-parts graphical model, which adds global (anatomic) constraints that further refine the supervoxel components that comprise the tumour. The framework was evaluated on 23 DCE-MRI scans of patients with rectal adenocarcinomas, and achieved a voxelwise area-under the receiver operating characteristic curve (AUC) of 0.97 compared to expert delineations. Creating a binary tumour segmentation, 21 of the 23 cases were segmented correctly with a median Dice similarity coefficient (DSC) of 0.63, which is close to the inter-rater variability of this challenging task. A second study is also included to demonstrate the method's generalisability and achieved a DSC of 0.71. The framework achieves promising results for the underexplored area of rectal tumour segmentation in DCE-MRI, and the methods have potential to be applied to other DCE-MRI and supervoxel segmentation problems.

  2. A method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes.

    Science.gov (United States)

    Zhao, F Y; Yang, X; Chen, D Y; Ma, W Y; Zheng, J G; Zhang, X M

    2014-01-01

    Many studies have suggested a link between the spatial organization of genomes and fundamental biological processes such as genome reprogramming, gene expression, and differentiation. Multicolor fluorescence in situ hybridization on three-dimensionally preserved nuclei (3D-FISH), in combination with confocal microscopy, has become an effective technique for analyzing 3D genome structure and spatial patterns of defined nucleus targets including entire chromosome territories and single gene loci. This technique usually requires the simultaneous visualization of numerous targets labeled with different colored fluorochromes. Thus, the number of channels and lasers must be sufficient for the commonly used labeling scheme of 3D-FISH, "one probe-one target". However, these channels and lasers are usually restricted by a given microscope system. This paper presents a method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes. In contrast to other labeling schemes, this method is convenient and simple for multicolor 3D-FISH studies, which may result in widespread adoption of the technique. Lastly, as an application of the method, the nucleus locations of chromosome territory 18/21 and centromere 18/21/13 in normal human lymphocytes were analyzed, which might present evidence of a radial higher order chromatin arrangement.

  3. Delineation of a deletion region critical for corpus callosal abnormalities in chromosome 1q43-q44.

    Science.gov (United States)

    Nagamani, Sandesh C Sreenath; Erez, Ayelet; Bay, Carolyn; Pettigrew, Anjana; Lalani, Seema R; Herman, Kristin; Graham, Brett H; Nowaczyk, Malgorzata Jm; Proud, Monica; Craigen, William J; Hopkins, Bobbi; Kozel, Beth; Plunkett, Katie; Hixson, Patricia; Stankiewicz, Pawel; Patel, Ankita; Cheung, Sau Wai

    2012-02-01

    Submicroscopic deletions involving chromosome 1q43-q44 result in cognitive impairment, microcephaly, growth restriction, dysmorphic features, and variable involvement of other organ systems. A consistently observed feature in patients with this deletion are the corpus callosal abnormalities (CCAs), ranging from thinning and hypoplasia to complete agenesis. Previous studies attempting to delineate the critical region for CCAs have yielded inconsistent results. We conducted a detailed clinical and molecular characterization of seven patients with deletions of chromosome 1q43-q44. Using array comparative genomic hybridization, we mapped the size, extent, and genomic content of these deletions. Four patients had CCAs, and shared the smallest region of overlap that contains only three protein coding genes, CEP170, SDCCAG8, and ZNF238. One patient with a small deletion involving SDCCAG8 and AKT3, and another patient with an intragenic deletion of AKT3 did not have any CCA, implying that the loss of these two genes is unlikely to be the cause of CCA. CEP170 is expressed extensively in the brain, and encodes for a protein that is a component of the centrosomal complex. ZNF238 is involved in control of neuronal progenitor cells and survival of cortical neurons. Our results rule out the involvement of AKT3, and implicate CEP170 and/or ZNF238 as novel genes causative for CCA in patients with a terminal 1q deletion.

  4. Microdeletions Including FMR1 in Three Female Patients with Intellectual Disability – Further Delineation of the Phenotype and Expression Studies

    Science.gov (United States)

    Zink, A.M.; Wohlleber, E.; Engels, H.; Rødningen, O.K.; Ravn, K.; Heilmann, S.; Rehnitz, J.; Katzorke, N.; Kraus, C.; Blichfeldt, S.; Hoffmann, P.; Reutter, H.; Brockschmidt, F.F.; Kreiß-Nachtsheim, M.; Vogt, P.H.; Prescott, T.E.; Tümer, Z.; Lee, J.A.

    2014-01-01

    Fragile X syndrome (FXS) is one of the most common causes of intellectual disability/developmental delay (ID/DD), especially in males. It is caused most often by CGG trinucleotide repeat expansions, and less frequently by point mutations and partial or full deletions of the FMR1 gene. The wide clinical spectrum of affected females partly depends on their X-inactivation status. Only few female ID/DD patients with microdeletions including FMR1 have been reported. We describe 3 female patients with 3.5-, 4.2- and 9.2-Mb de novo microdeletions in Xq27.3-q28 containing FMR1. X-inactivation was random in all patients, yet they presented with ID/DD as well as speech delay, macrocephaly and other features attributable to FXS. No signs of autism were present. Here, we further delineate the clinical spectrum of female patients with microdeletions. FMR1 expression studies gave no evidence for an absolute threshold below which signs of FXS present. Since FMR1 expression is known to be highly variable between unrelated females, and since FMR1 mRNA levels have been suggested to be more similar among family members, we further explored the possibility of an intrafamilial effect. Interestingly, FMR1 mRNA levels in all 3 patients were significantly lower than in their respective mothers, which was shown to be specific for patients with microdeletions containing FMR1. PMID:24715853

  5. Delineation of the 3p14.1p13 microdeletion associated with syndromic distal limb contractures.

    Science.gov (United States)

    Thevenon, Julien; Monnier, Nicole; Callier, Patrick; Dieterich, Klaus; Francoise, Michel; Montgomery, Tara; Kjaergaard, Susanne; Neas, Katherine; Dixon, Joanne; Dahm, Thomas Lee; Huet, Frédéric; Ragon, Clémence; Mosca-Boidron, Anne-Laure; Marle, Nathalie; Duplomb, Laurence; Aubriot-Lorton, Marie-Hélène; Mugneret, Francine; Vokes, Steve A; Tucker, Haley W; Lunardi, Joël; Faivre, Laurence; Jouk, Pierre Simon; Thauvin-Robinet, Christel

    2014-12-01

    Distal limb contractures (DLC) represent a heterogeneous clinical and genetic condition. Overall, 20-25% of the DLC are caused by mutations in genes encoding the muscle contractile apparatus. Large interstitial deletions of the 3p have already been diagnosed by standard chromosomal analysis, but not associated with a specific phenotype. We report on four patients with syndromic DLC presenting with a de novo 3p14.1p13 microdeletion. The clinical features associated multiple contractures, feeding problems, developmental delay, and intellectual disability. Facial dysmorphism was constant with low-set posteriorly rotated ears and blepharophimosis. Review of previously reported cases with a precise mapping of the deletions, documented a 250 kb smallest region of overlap (SRO) necessary for DLC. This region contained one gene, EIF4E3, the first three exons of the FOXP1 gene, and an intronic enhancer of FOXP1 named hs1149. Sanger sequencing and locus quantification of hs1149, EIF4E3, and FOXP1 in a cohort of 11 French patients affected by DLC appeared normal. In conclusion, we delineate a new microdeletion syndrome involving the 3p14.1p13 locus and associated with DLC and severe developmental delay. © 2014 Wiley Periodicals, Inc.

  6. Rapid delineation of alluvial fans using IfSAR-derived DEM for selected provinces in the Philippines

    Science.gov (United States)

    Ortiz, Iris Jill; Aquino, Dakila; Norini, Gianluca; Narod Eco, Rodrigo; Mahar Lagmay, Alfredo

    2015-04-01

    Alluvial fans are fan-shaped geomorphic features formed when sediments from a watershed are transported and deposited downstream via tributaries flowing out from the sudden break of a slope. Hazards usually associated with alluvial fans are flooding and debris flows. In this study, we used an Interferometric Synthetic Aperture Radar-derived digital elevation model of Pangasinan and Nueva Ecija Provinces in the Philippines to identify and delineate alluvial fans. Primary parameters considered include the geomorphic characteristics of the catchment area, stream network and slopes ranging from 0.11 to 8 degrees. Using this method, 12 alluvial fans were identified in Pangasinan and 16 in Nueva Ecija with areas ranging from 0.35 to 80 sq. km. The largest fan identified is the Mangatarem-Aguilar fan in Pangaisnan with a total area of 80.87 sq km while the Gabaldon fan in Nueva Ecija with total area of 48.11 sq km. We observed from the results that some alluvial fans have multiple feeder streams, and others have overlapping lateral extents with adjacent fans. These overlapping fans are called bajadas. In addition, the general location of fans and their apices in the two provinces appear to coincide with segments of the Philippines Fault System. There are about people 1.4 million living within these alluvial fans. Mapping and characterizing and identifying their associated hazards is crucial in the disaster preparedness efforts of the exposed population.

  7. Delineation of the endocytic pathway of substance P and its seven-transmembrane domain NK1 receptor.

    Science.gov (United States)

    Grady, E F; Garland, A M; Gamp, P D; Lovett, M; Payan, D G; Bunnett, N W

    1995-01-01

    Many of the actions of the neuropeptide substance P (SP) that are mediated by the neurokinin 1 receptor (NK1-R) desensitize and resensitize, which may be associated with NK1-R endocytosis and recycling. We delineated this endocytic pathway in transfected cells by confocal microscopy using cyanine 3-SP and NK1-R antibodies. SP and the NK1-R were internalized into the same clathrin immunoreactive vesicles, and then sorted into different compartments. The NK1-R was colocalized with a marker of early endosomes, but not with markers of late endosomes or lysosomes. We quantified the NK1-R at the cell surface by incubating cells with an antibody to an extracellular epitope. After exposure to SP, there was a loss and subsequent recovery of surface NK1-R. The loss was prevented by hypertonic sucrose and potassium depletion, inhibitors of clathrin-mediated endocytosis. Recovery was independent of new protein synthesis because it was unaffected by cycloheximide. Recovery required endosomal acidification because it was prevented by an H(+)-ATPase inhibitor. The fate of internalized 125I-SP was examined by chromatography. SP was intact at the cell surface and in early endosomes, but slowly degraded in perinuclear vesicles. We conclude that SP induces clathrin-dependent internalization of the NK1-R. The SP/NK1-R complex dissociates in acidified endosomes. SP is degraded, whereas the NK1-R recycles to the cell surface. Images PMID:7545030

  8. AUTOMATED WETLAND DELINEATION FROM MULTI-FREQUENCY AND MULTI-POLARIZED SAR IMAGES IN HIGH TEMPORAL AND SPATIAL RESOLUTION

    Directory of Open Access Journals (Sweden)

    L. Moser

    2016-06-01

    Full Text Available Water scarcity is one of the main challenges posed by the changing climate. Especially in semi-arid regions where water reservoirs are filled during the very short rainy season, but have to store enough water for the extremely long dry season, the intelligent handling of water resources is vital. This study focusses on Lac Bam in Burkina Faso, which is the largest natural lake of the country and of high importance for the local inhabitants for irrigated farming, animal watering, and extraction of water for drinking and sanitation. With respect to the competition for water resources an independent area-wide monitoring system is essential for the acceptance of any decision maker. The following contribution introduces a weather and illumination independent monitoring system for the automated wetland delineation with a high temporal (about two weeks and a high spatial sampling (about five meters. The similarities of the multispectral and multi-polarized SAR acquisitions by RADARSAT-2 and TerraSAR-X are studied as well as the differences. The results indicate that even basic approaches without pre-classification time series analysis or post-classification filtering are already enough to establish a monitoring system of prime importance for a whole region.

  9. The Delineation of Paleo-Shorelines in the Lake Manyara Basin Using TerraSAR-X Data

    Directory of Open Access Journals (Sweden)

    Felix Bachofer

    2014-03-01

    Full Text Available The purpose of this paper is to describe the delineation of paleo-shorelines using high resolution microwave images and digital image processing tools, and with that to contribute to the understanding of the complex landscape evolution of the Lake Manyara Basin. The surroundings of Lake Manyara are the focus of several paleo-archeological investigations, since the location is close to Olduvai Gorge, where paleo-anthropological findings can be traced back to homo habilis. In the catchment of Lake Manyara two hominin-bearing sites (0.78 to 0.63 Ma, lots of vertebrate fossils and hand axes from different periods were found. Understanding the development and extent of the lake is crucial for understanding the regional paleo-environment of the Quaternary. Morphological structures of shorelines and terraces east of Lake Manyara were identified from TerraSAR-X StripMap images. By applying a Canny edge detector, linear features were extracted and revised for different image acquisitions using a contextual approach. Those features match literature and field references. A digital elevation model of the region was used to map the most distinct paleo-shorelines according to their elevation.

  10. 13C-MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light- and carbon-sufficient conditions.

    Science.gov (United States)

    You, Le; Berla, Bert; He, Lian; Pakrasi, Himadri B; Tang, Yinjie J

    2014-05-01

    The central carbon metabolism of cyanobacteria is under debate. For over 50 years, the lack of α-ketoglutarate dehydrogenase has led to the belief that cyanobacteria have an incomplete TCA cycle. Recent in vitro enzymatic experiments suggest that this cycle may in fact be closed. The current study employed (13) C isotopomers to delineate pathways in the cyanobacterium Synechocystis sp. PCC 6803. By tracing the incorporation of supplemented glutamate into the downstream metabolites in the TCA cycle, we observed a direct in vivo transformation of α-ketoglutarate to succinate. Additionally, isotopic tracing of glyoxylate did not show a functional glyoxylate shunt and glyoxylate was used for glycine synthesis. The photomixotrophic carbon metabolism was then profiled with (13) C-MFA under light and carbon-sufficient conditions. We observed that: (i) the in vivo flux through the TCA cycle reactions (α-ketoglutarate → succinate) was minimal (<2%); (ii) the flux ratio of CO2 fixation was six times higher than that of glucose utilization; (iii) the relative flux through the oxidative pentose phosphate pathway was low (<2%); (iv) high flux through malic enzyme served as a main route for pyruvate synthesis. Our results improve the understanding of the versatile metabolism in cyanobacteria and shed light on their application for photo-biorefineries.

  11. Electric field controlled strain induced reversible switching of magnetization in Galfenol nanomagnets delineated on PMN-PT substrate

    Science.gov (United States)

    Ahmad, Hasnain; Atulasimha, Jayasimha; Bandyopadhyay, Supriyo

    We report a non-volatile converse magneto-electric effect in elliptical Galfenol (FeGa) nanomagnets of ~300 nm lateral dimensions and ~10nm thickness delineated on a PMN-PT substrate. This effect can be harnessed for energy-efficient non-volatile memory. The nanomagnets are fabricated with e-beam lithography and sputtering. Their major axes are aligned parallel to the direction in which the substrate is poled and they are magnetized in this direction with a magnetic field. An electric field in the opposite direction generates compressive strain in the piezoelectric substrate which is partially transferred to the nanomagnets and rotates their magnetization away from the major axes to metastable orientations. There they remain after the field is removed, resulting in non-volatility. Reversing the electric field generates tensile strain which returns the magnetization to the original state. The two states can encode two binary bits which can be written using the correct voltage polarity, resulting in non-toggle behavior. Scaled memory fashioned on this effect can exhibit write energy dissipation of only ~2 aJ. Work is supported by NSF under ECCS-1124714 and CCF-1216614. Sputtering was carried out at NIST Gaithersburg.

  12. Deep tissue volume imaging of birefringence through fibre-optic needle probes for the delineation of breast tumour

    Science.gov (United States)

    Villiger, Martin; Lorenser, Dirk; McLaughlin, Robert A.; Quirk, Bryden C.; Kirk, Rodney W.; Bouma, Brett E.; Sampson, David D.

    2016-07-01

    Identifying tumour margins during breast-conserving surgeries is a persistent challenge. We have previously developed miniature needle probes that could enable intraoperative volume imaging with optical coherence tomography. In many situations, however, scattering contrast alone is insufficient to clearly identify and delineate malignant regions. Additional polarization-sensitive measurements provide the means to assess birefringence, which is elevated in oriented collagen fibres and may offer an intrinsic biomarker to differentiate tumour from benign tissue. Here, we performed polarization-sensitive optical coherence tomography through miniature imaging needles and developed an algorithm to efficiently reconstruct images of the depth-resolved tissue birefringence free of artefacts. First ex vivo imaging of breast tumour samples revealed excellent contrast between lowly birefringent malignant regions, and stromal tissue, which is rich in oriented collagen and exhibits higher birefringence, as confirmed with co-located histology. The ability to clearly differentiate between tumour and uninvolved stroma based on intrinsic contrast could prove decisive for the intraoperative assessment of tumour margins.

  13. Methods for specifying spatial boundaries of cities in the world: The impacts of delineation methods on city sustainability indices.

    Science.gov (United States)

    Uchiyama, Yuta; Mori, Koichiro

    2017-08-15

    The purpose of this paper is to analyze how different definitions and methods for delineating the spatial boundaries of cities have an impact on the values of city sustainability indicators. It is necessary to distinguish the inside of cities from the outside when calculating the values of sustainability indicators that assess the impacts of human activities within cities on areas beyond their boundaries. For this purpose, spatial boundaries of cities should be practically detected on the basis of a relevant definition of a city. Although no definition of a city is commonly shared among academic fields, three practical methods for identifying urban areas are available in remote sensing science. Those practical methods are based on population density, landcover, and night-time lights. These methods are correlated, but non-negligible differences exist in their determination of urban extents and urban population. Furthermore, critical and statistically significant differences in some urban environmental sustainability indicators result from the three different urban detection methods. For example, the average values of CO2 emissions per capita and PM10 concentration in cities with more than 1 million residents are significantly different among the definitions. When analyzing city sustainability indicators and disseminating the implication of the results, the values based on the different definitions should be simultaneously investigated. It is necessary to carefully choose a relevant definition to analyze sustainability indicators for policy making. Otherwise, ineffective and inefficient policies will be developed. Copyright © 2017 Elsevier B.V. All rights reserved.

  14. A method to obtain correct standard uptake values in Pinnacle treatment planning system for target volume delineation

    Directory of Open Access Journals (Sweden)

    Farshid Salehzahi

    2016-01-01

    Full Text Available Standardized uptake value (SUV is an advanced tool for quantitative tumor identification and metabolic target volume delineation (TVD in diagnostic and therapeutic settings. It is thus important to establish a quality assured process to maintain the traceability of data correctly by positron emission tomography (PET systems. Patient administration of 18 fluoro-deoxy-glucose is increasingly delivered by automated infusion systems (AISs. Whenever AIS is used, its accuracy and traceability measurement need verification. In addition, it was observed that the unreproducible SUV displayed in PET and the treatment planning system (TPS may cause grave concerns for radiation oncologists for TVD. This concern may complicate the correlation of TVD on PET and TPS and their clinical reporting. The SUV traceability was established from the PET system to AIS. Its accuracy was verified by cross-referencing to the reference dose calibrator traceable to a primary standard. The SUV values were converted in TPS using the in-house "clinical tool" to be identical as in PET, to allow radiation oncologists to use SUV confidently. The outcome of this study enables the clinical groups to rely on the correct SUV values displayed on the TPS and to improve the quality of care for patients in clinical procedures.

  15. A method to obtain correct standard uptake values in Pinnacle treatment planning system for target volume delineation.

    Science.gov (United States)

    Salehzahi, Farshid; Tse, Jason; Lee, Jonathan; Selvaraj, Jothybasu

    2016-01-01

    Standardized uptake value (SUV) is an advanced tool for quantitative tumor identification and metabolic target volume delineation (TVD) in diagnostic and therapeutic settings. It is thus important to establish a quality assured process to maintain the traceability of data correctly by positron emission tomography (PET) systems. Patient administration of (18)fluoro-deoxy-glucose is increasingly delivered by automated infusion systems (AISs). Whenever AIS is used, its accuracy and traceability measurement need verification. In addition, it was observed that the unreproducible SUV displayed in PET and the treatment planning system (TPS) may cause grave concerns for radiation oncologists for TVD. This concern may complicate the correlation of TVD on PET and TPS and their clinical reporting. The SUV traceability was established from the PET system to AIS. Its accuracy was verified by cross-referencing to the reference dose calibrator traceable to a primary standard. The SUV values were converted in TPS using the in-house "clinical tool" to be identical as in PET, to allow radiation oncologists to use SUV confidently. The outcome of this study enables the clinical groups to rely on the correct SUV values displayed on the TPS and to improve the quality of care for patients in clinical procedures.

  16. Delineation of extensor tendon of the hand by MRI: usefulness of "soap-bubble" mip processing technique.

    Science.gov (United States)

    Tsujimoto, Yumiko; Ryoke, Koji; Yamagami, Nobuo; Uchio, Yuji; Tanaka, Shigeko

    2015-01-01

    To evaluate the capability of the "Soap-Bubble" maximum intensity projection (MIP) processing technique in visualisation of extensor tendons of the hand, 36 intact subjects and seven patients with surgically confirmed extensor tendon rupture were examined. Three-dimensional T1-weighted turbo spin echo (3DT1TFE) MRI was performed using a sensitivity encoding flex coil, followed by Soap-Bubble MIP processing. For patients with extensor tendon ruptures, MRI findings and intraoperative findings were compared. As results, with only 3DT1TFE sequence, the entire extensor tendons that run along the arch of the hand were not shown on one image, but were visualised with addition of Soap-Bubble MIP. Although delineation of the extensor pollicis longus was poor in 27/43 subjects, it was much improved by the combination of water-suppression technique. MRI findings and intraoperative findings agreed in all patients. Soap-Bubble MIP processing with addition of water-suppression technique is considered useful for visualising the extensor tendons of the hand.

  17. Automated Wetland Delineation from Multi-Frequency and Multi-Polarized SAR Images in High Temporal and Spatial Resolution

    Science.gov (United States)

    Moser, L.; Schmitt, A.; Wendleder, A.

    2016-06-01

    Water scarcity is one of the main challenges posed by the changing climate. Especially in semi-arid regions where water reservoirs are filled during the very short rainy season, but have to store enough water for the extremely long dry season, the intelligent handling of water resources is vital. This study focusses on Lac Bam in Burkina Faso, which is the largest natural lake of the country and of high importance for the local inhabitants for irrigated farming, animal watering, and extraction of water for drinking and sanitation. With respect to the competition for water resources an independent area-wide monitoring system is essential for the acceptance of any decision maker. The following contribution introduces a weather and illumination independent monitoring system for the automated wetland delineation with a high temporal (about two weeks) and a high spatial sampling (about five meters). The similarities of the multispectral and multi-polarized SAR acquisitions by RADARSAT-2 and TerraSAR-X are studied as well as the differences. The results indicate that even basic approaches without pre-classification time series analysis or post-classification filtering are already enough to establish a monitoring system of prime importance for a whole region.

  18. T-R CYCLE CHARACTERIZATION AND IMAGING: ADVANCED DIAGNOSTIC METHODOLOGY FOR PETROLEUM RESERVOIR AND TRAP DETECTION AND DELINEATION

    Energy Technology Data Exchange (ETDEWEB)

    Ernest A. Mancini

    2004-09-24

    The principal research effort for Year 1 of the project has been T-R cycle characterization and modeling. The research focus for the first nine (9) months of Year 1 was on outcrop study, well log analysis, seismic interpretation and data integration and for the remainder of the year the emphasis has been on T-R cycle model development. Information regarding the characteristics of T-R cycles has been assembled from the study of outcrops, from well log analyses, and from seismic reflection interpretation. From these studies, stratal boundaries separating T-R cycles have been found to be useful for the recognition and delineation of these cycles. The key stratal surfaces include subaerial unconformities, shoreface ravinement surfaces, transgressive surfaces, surfaces of maximum regression, and surfaces of maximum transgression. These surfaces can be identified and mapped in surface exposures and can be recognized in well log signatures and seismic reflection profiles as discontinuities. The findings from the study of outcrop, well log, and seismic reflection data are being integrated into a database for use in constructing a model for T-R cycle development.

  19. Controlled-source electromagnetic and seismic delineation of subseafloor fluid flow structures in a gas hydrate province, offshore Norway

    Science.gov (United States)

    Attias, Eric; Weitemeyer, Karen; Minshull, Tim A.; Best, Angus I.; Sinha, Martin; Jegen-Kulcsar, Marion; Hölz, Sebastian; Berndt, Christian

    2016-08-01

    Deep sea pockmarks underlain by chimney-like or pipe structures that contain methane hydrate are abundant along the Norwegian continental margin. In such hydrate provinces the interaction between hydrate formation and fluid flow has significance for benthic ecosystems and possibly climate change. The Nyegga region, situated on the western Norwegian continental slope, is characterized by an extensive pockmark field known to accommodate substantial methane gas hydrate deposits. The aim of this study is to detect and delineate both the gas hydrate and free gas reservoirs at one of Nyegga's pockmarks. In 2012, a marine controlled-source electromagnetic (CSEM) survey was performed at a pockmark in this region, where high-resolution 3-D seismic data were previously collected in 2006. 2-D CSEM inversions were computed using the data acquired by ocean bottom electrical field receivers. Our results, derived from unconstrained and seismically constrained CSEM inversions, suggest the presence of two distinctive resistivity anomalies beneath the pockmark: a shallow vertical anomaly at the underlying pipe structure, likely due to gas hydrate accumulation, and a laterally extensive anomaly attributed to a free gas zone below the base of the gas hydrate stability zone. This work contributes to a robust characterization of gas hydrate deposits within subseafloor fluid flow pipe structures.

  20. Background-Based Delineation of Internal Tumor Volumes on Static Positron Emission Tomography in a Phantom Study

    Directory of Open Access Journals (Sweden)

    yangchun chen

    2016-01-01

    Full Text Available Objective(s: Considering the fact that the standardized uptake value (SUV of a normal lung tissue is expressed as x±SD, x+3×SD could be considered as the threshold value to outline the internal tumor volume (ITV of a lung neoplasm. Methods: Three hollow models were filled with 55.0 kBq/mL fluorine18- fluorodeoxyglucose (18F-FDG to represent tumors. The models were fixed to a barrel filled with 5.9 kBq/mL 18F-FDG to characterize normal lung tissues as a phantom. The PET/CT images of the phantom were acquired at rest. Then, the barrel was moved periodically to simulate breathing while acquiring PET/CT data. Volume recovery coefficient (VRC was applied to evaluate the accuracy of ITVs. For statistical analysis, paired t-test and analysis of variance were applied. Results: The VRCs ranged from 0.74 to 0.98 and significantly varied among gross tumor volumes for delineating ITV (P0.05, whereas VRC decreased with increasing distance in three-dimensional PET scans (P