WorldWideScience

Sample records for darlington ngs vacuum

  1. Detailed finite element analysis of Darlington NGS feeder pipes with locally thinned regions below pressure minimum thickness

    Energy Technology Data Exchange (ETDEWEB)

    Haq, I.; Stojakovic, M.; Li, M. [Ontario Power Generation Inc., Pickering, Ontario (Canada)

    2011-07-01

    Feeder Pipes in CANDU nuclear stations are experiencing wall thinning due to flow accelerated corrosion (FAC) resulting in locally thinned regions in addition to general thinning. In Darlington NGS these locally thinned regions can be below pressure based minimum thickness (t{sub min}), required as per ASME Code Section III NB-3600 Equation (1). A methodology is presented to qualify the locally thinned regions under NB-3200 (NB-3213 and NB-3221) for internal pressure loading only. Detailed finite element models are used for internal pressure analysis using ANSYS v11.0. All other loadings such as deadweight, thermal and seismic loadings are qualified under NB-3600 using a general purpose piping stress analysis software. The piping stress analysis is based on average thickness equal to t{sub min} along with maximum values of ASME Code stress indices (Table NB-3681(a)-1). The requirement for the use of this methodology is that the average thickness of each cross-section with the locally thinned region shall be at least t{sub min}. The finite element analysis models are thinned to 0.75 t{sub min} (in increments of 0.05 t{sub min}) all-around the circumference in the straight section region allowing for flexible inspection requirements. Two different thicknesses of 1.10 t{sub min} and 1.30 t{sub min} are assigned to the bends. Thickness vs the allowable axial extent curves were developed for different types of feeder pipes in service. Feeders differ in pipe size, straight section length, bend angle and orientation. The stress analysis results show that all Darlington NGS outlet feeder pipes are fit for service with locally thinned regions up to 75% of the pressure based minimum thickness. This paper demonstrates the effectiveness of finite element analysis in extending the useful life of degraded piping components. (author)

  2. Base drive circuit for a four-terminal power Darlington

    Science.gov (United States)

    Lee, Fred C.; Carter, Roy A.

    1983-01-01

    A high power switching circuit which utilizes a four-terminal Darlington transistor block to improve switching speed, particularly in rapid turn-off. Two independent reverse drive currents are utilized during turn off in order to expel the minority carriers of the Darlington pair at their own charge sweep-out rate. The reverse drive current may be provided by a current transformer, the secondary of which is tapped to the base terminal of the power stage of the Darlington block. In one application, the switching circuit is used in each power switching element in a chopper-inverter drive of an electric vehicle propulsion system.

  3. Design of the Bruce and Darlington universal delivery machine heads

    Energy Technology Data Exchange (ETDEWEB)

    Gray, M.G. [GE Canada Nuclear Products, Peterborough, Ontario (Canada)]. E-mail: mike.gray@cdnnuc.ge.com; Brown, R. [OPG Inspection Services Div., Bruce Nuclear Power Development, Tiverton, Ontario (Canada)

    2003-07-01

    The Universal Delivery Machine was designed and supplied to reduce the time required to perform channel inspection services. The Bruce UDM was the first to be completed followed by Pickering and Darlington. The Bruce and Darlington machines are nearly identical. Design concepts applied include a rotating, multiple tool station magazine, a rigid chain driving telescoping rams, a common drive package, and an external support frame to meet seismic qualification requirements. (author)

  4. Universal delivery machine - design of the Bruce and Darlington heads

    Energy Technology Data Exchange (ETDEWEB)

    Gray, M.G. [GE Canada Nuclear Products, Peterborough, Ontario (Canada); Brown, R. [OPG Inspection Services Division and Bruce Nuclear Power Development, Toronto, Ontario (Canada)

    2003-12-01

    The Universal Delivery Machine (UDM) was designed and supplied to reduce the time required to perform channel inspection services. The Bruce UDM was the first to be completed followed by Pickering and Darlington. The Bruce and Darlington machines are nearly identical. Design concepts applied include a rotating, multiple tool station magazine, a rigid chain driving telescoping rams, a common drive package, and an external support frame to meet seismic qualification requirements. (author)

  5. NgsRelate

    DEFF Research Database (Denmark)

    Korneliussen, Thorfinn Sand; Moltke, Ida

    2015-01-01

    . Using both simulated and real data, we show that NgsRelate provides markedly better estimates for low-depth NGS data than two state-of-the-art genotype-based methods. AVAILABILITY: NgsRelate is implemented in C++ and is available under the GNU license at www.pop gen.dk/software. CONTACT: ida...

  6. NgsRelate

    DEFF Research Database (Denmark)

    Korneliussen, Thorfinn Sand; Moltke, Ida

    2015-01-01

    be called with high certainty. RESULTS: We present a software tool, NgsRelate, for estimating pairwise relatedness from NGS data. It provides maximum likelihood estimates that are based on genotype likelihoods instead of genotypes and thereby takes the inherent uncertainty of the genotypes into account....... Using both simulated and real data, we show that NgsRelate provides markedly better estimates for low-depth NGS data than two state-of-the-art genotype-based methods. AVAILABILITY: NgsRelate is implemented in C++ and is available under the GNU license at www.pop gen.dk/software. CONTACT: ida...

  7. Darlington NGS A: SGECS condensation induced waterhammer analysis and SGECS hot commissioning test

    Energy Technology Data Exchange (ETDEWEB)

    So, C.W. [Atomic Energy of Canada Limited, Darlington Nuclear Generating Station, Bowmanville, ON (Canada); Chang, P.L.; Meranda, D.G. [Ontario Hydro, Darlington Nuclear Generating Station, Bowmanville, ON (Canada)

    1997-07-01

    In the event of an accident such as the main steam line break, the reheater drain pump and the feedwater pump could fail. As a result, feedwater to the steam generators (SG-1 and SG-3) will stop, and the inventory in the SGs flash. This would cause depressurization of the SGs and formation of steam void in the piping of the Steam Generator Emergency Cooling System (SGECS). The subsequent low SG pressure will initiate the SGECS injection into the SGs. Upon the injection of the cold SGECS fluid to the steam filled SGECS piping, condensation would take place, and condensation induced waterhammer in the SGECS may occur. As an interim measure to protect the SGECS piping, the Second Stage Reheater Drain (RHD) flow to the SGs was suspended. This resulted in a 3% loss of power, a significant economic penalty to the heat cycle of the turbine. To remove the economic penalty, the original design of the SGECS was revised. To ensure the adequacy of the revised design, condensation induced waterhammer analysis were performed. The predicted pressure transients have passed the allowable level of stress limits. The analysis was presented to the AECB. Although the AECB has accepted the analytical results, the AECB requested a 'hot' commissioning test at site to demonstrate that the revised design does meet the operation requirement. The test was successfully performed. Subsequently, the AECB has allowed OH to re-instate the Second Stage Reheater Drain flow to the SGs. (author)

  8. NGS Survey Control Map

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The NGS Survey Control Map provides a map of the US which allows you to find and display geodetic survey control points stored in the database of the National...

  9. NGS Absolute Gravity Data

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The NGS Absolute Gravity data (78 stations) was received in July 1993. Principal gravity parameters include Gravity Value, Uncertainty, and Vertical Gradient. The...

  10. A Light-Activated SiC Darlington Transistor Using SiCGe as Base Layer

    Institute of Scientific and Technical Information of China (English)

    CHEN Zhi-Ming(陈治明); PU Hong-Bin(蒲红斌); Fred R.BEYETTE Jr

    2003-01-01

    If a Darlington transistor is triggered by the photocurrent output from an individual photodiode, the electromagnetic interference (EMI) problem may still exist because the direct input of the Darlington is an actually electronic signal To eliminate the EMI problem completely, we propose an absolutely light-activated Darlington transistor made of SiC, in which p-SiCGe/n-SiC heterojunction is employed to produce a base current by means of optical illumination. Performance of the novel light-activated power switch was simulated using MEDICI tools,which has shown that the light-activated device has very good switching characteristics especially for a triggering light intensity greater than 0.23 W/cm2. For a relatively weak light, the device can be switched to the ON state only for a higher bias voltage.

  11. Treatment of Arsenazo III contaminated heavy water stored at Darlington

    Energy Technology Data Exchange (ETDEWEB)

    Suryanarayan, S.; Husain, A., E-mail: sriram.s@kinectrics.com [Kinectrics Inc., Toronto, Ontario (Canada); Williams, D., E-mail: denny.williams@opg.com [Ontario Power Generation, Darlington Nuclear Generating Station, Bowmanville, Ontario (Canada)

    2010-07-01

    Darlington Nuclear Generating Station (DNGS) has accumulated over 48 drums of chemistry laboratory waste arising from analysis of heavy water (D{sub 2}O). Several organic, including Arsenazo III, and inorganic contaminants present in these drums results in high total organic carbon (TOC) and conductivity. These drums have not been processed due to uncertainties related to clean-up of Arsenazo III contaminated heavy water. This paper provides details of chemical characterization as well as bench scale studies performed to demonstrate the feasibility of treating the downgraded D{sub 2}O to the stringent target specifications of <1 ppm TOC and <0.1mS/m conductivity, required for feed to the Station Upgrading Plant (SUP). Both ionic organic species such as glycolate, acetate and formate as well as neutral organics such as acetone, methanol and ethylene glycol were detected in all the samples. Morpholine and propylene glycol were detected in one sample. Arsenazo III was determined to be not a major contaminant (maximum 8.4 ppm) in these waste drums, compared to the other organic contaminants present. Various unit processes such as pH adjustment, granular activated carbon (GAC), ion exchange resin (IX), UV-peroxide oxidation (UV-H{sub 2}O{sub 2}) treatments, nanofiltration (NF) as well as reverse osmosis (RO) were tested on a bench scale both singly as well as in various combinations to evaluate their ability to achieve the stringent target conductivity and TOC specifications. Among the various bench scale tests evaluated, the successive processing train used at DNGS and consisting of GAC+IX+UV/H{sub 2}O{sub 2}+IX (polishing) unit operations was found to meet target specifications for both conductivity and TOC. Unit processes comprising (GAC+IX) and (RO-double pass + GAC+IX) met conductivity targets but failed to meet TOC specifications. The results of GAC+IX tests clearly emphasize the importance of using low flow rates for successful reduction in both conductivity as

  12. Evaluation of the ERP dispersion model using Darlington tracer-study data. Report No. 90-200-K

    Energy Technology Data Exchange (ETDEWEB)

    Wright, S.C.

    1990-01-01

    In this study, site-boundary atmospheric dilution factors calculated by the atmospheric dispersion model used in the ERP (Emergency Response Planning) computer code were compared to data collected during the Darlington tracer study. The purpose of this comparison was to obtain estimates of model uncertainty under a variety of conditions. This report provides background on ERP, the ERP dispersion model and the Darlington tracer study. Model evaluation techniques are discussed briefly, and the results of the comparison of model calculations with the field data are presented and reviewed.

  13. NGS-based deep bisulfite sequencing.

    Science.gov (United States)

    Lee, Suman; Kim, Joomyeong

    2016-01-01

    We have developed an NGS-based deep bisulfite sequencing protocol for the DNA methylation analysis of genomes. This approach allows the rapid and efficient construction of NGS-ready libraries with a large number of PCR products that have been individually amplified from bisulfite-converted DNA. This approach also employs a bioinformatics strategy to sort the raw sequence reads generated from NGS platforms and subsequently to derive DNA methylation levels for individual loci. The results demonstrated that this NGS-based deep bisulfite sequencing approach provide not only DNA methylation levels but also informative DNA methylation patterns that have not been seen through other existing methods.•This protocol provides an efficient method generating NGS-ready libraries from individually amplified PCR products.•This protocol provides a bioinformatics strategy sorting NGS-derived raw sequence reads.•This protocol provides deep bisulfite sequencing results that can measure DNA methylation levels and patterns of individual loci.

  14. Toward Better Oversight of NGS Tests.

    Science.gov (United States)

    2016-09-01

    The FDA has published two draft guidance documents aimed at streamlining its oversight of tests based on next-generation sequencing (NGS). One contains preliminary recommendations addressing the analytic validity of NGS-based tests for hereditary diseases; the other explains how test developers can obtain official recognition of their genetic variant databases, potentially speeding marketing clearance or approval.

  15. Investigations into the failure of fuel bundle end plates in a Darlington reactor

    Energy Technology Data Exchange (ETDEWEB)

    Price, E.G. [Atomic Energy of Canada Ltd., Montreal, PQ (Canada). CANDU Operations; Ho, E.T.C.; Shek, G.; Ramasubramanian, N. [Canadian Fusion Fuels Technology Project, Toronto, ON (Canada); Maguire, M.; Hosbons, R. [Atomic Energy of Canada Ltd., Kanata, ON (Canada). Radiochemical Co.

    1994-12-31

    After about 90 channels had been refueled in the 480 channel Darlington reactor, a failed fuel bundle at the outlet of channel N12 prevented refuelling of that channel. Subsequent inspection of the outlet ends of a number of channels, showed that several high power channels in the central columns of the reactor had cracks in the end plates of the outlet bundles. This discovery precipitated a multi-discipline investigation, involving a large number of Canadian organizations, to determine the cause and develop a solution. A metallurgical team was set up and given the nominal mandate of determining: - the mode of failure of the end plates; - when failure had occurred and thus by inference the heat transport conditions at the time of failure; - the type of stressing or the metallurgical conditions that had caused failure. (authors). 6 figs., 4 refs.

  16. Estimating inbreeding coefficients from NGS data

    DEFF Research Database (Denmark)

    Vieira, Filipe Garrett; Fumagalli, Matteo; Albrechtsen, Anders;

    2013-01-01

    Most methods for Next-Generation Sequencing (NGS) data analyses incorporate information regarding allele frequencies using the assumption of Hardy-Weinberg Equilibrium (HWE) as a prior. However, many organisms including domesticated, partially selfing or with asexual life cycles show strong...... deviations from HWE. For such species, and specially for low coverage data, it is necessary to obtain estimates of inbreeding coefficients (F) for each individual beforecalling genotypes. Here, we present two methods for estimating inbreeding coefficients from NGS data based on an Expectation...

  17. Statistical modelling of spatio-temporal dependencies in NGS data

    NARCIS (Netherlands)

    Ranciati, Saverio

    2016-01-01

    Next-generation sequencing (NGS) heeft zich snel gevestigd als de huidige standaard in de genetische analyse. Deze omschakeling van microarray naar NGS vereist nieuwe statistische strategieën om de onderzoeksvragen aan te pakken. Ten eerste, NGS data bestaat uit discrete waarnemingen, meestal gekenm

  18. The potential of whole genome NGS for infectious disease diagnosis.

    Science.gov (United States)

    Lecuit, Marc; Eloit, Marc

    2015-01-01

    Non-targeted identification of microbes is now possible directly in biological samples, based on whole-genome-NGS (WG-NGS) techniques that allow deep sequencing of nucleic acids, data mining and sorting out of sequences of pathogens without any a priori hypothesis. WG-NGS was first only used as a research tool due to its cost, complexity and lack of standardization. Recent improvements in sample preparation and bioinformatics pipelines and decrease in cost now allow actionable diagnostics in patients. The potency and limits of WG-NGS and possible future indications are discussed here. WG-NGS will likely soon become a standard procedure in microbiological diagnosis.

  19. The CERN Neutrino beam to Gran Sasso (NGS)

    CERN Document Server

    Bailey, R; Ball, A E; Bonnal, P; Buhler-Broglin, Manfred; Détraz, C; Elsener, Konrad; Ereditato, A; Faugeras, Paul E; Ferrari, A; Fortuna, G; Grant, A L; Guglielmi, A M; Hilaire, A; Hübner, Kurt; Jonker, M; Kissler, Karl Heinz; López-Hernandez, L A; Maugain, J M; Migliozzi, P; Palladino, Vittorio; Pietropaolo, F; Revol, Jean Pierre Charles; Sala, P R; Sanelli, C; Stevenson, Graham Roger; Vassilopoulos, N; Vincke, H H; Weisse, E; Wilhemsson, M

    1999-01-01

    The conceptual technical design of the NGS (CERN neutrino beam to Gran Sasso) facility has been presented in the report CERN 98-02 / INFN-AE/98-05. Additional information, in particular an update on various neutrino beam options for the NGS facility, has been provided in a memorandum to the CERN-SPSC Committee (CERN-SPSC/98-35). In the present report, further improvements on the NGS design and performance, in particular new scenarios for SPS proton cycles for NGS operation and a new version of the NGS "high energy" neutrino beam for nt appearance experiments, are described. This new NGS reference beam is estimated to provide three times more nt events per year than the beam presented in the 1998 report. The radiological aspects of the NGS facility have been re-examined with the new beam design. An updated version of the construction schedule is also presented.

  20. The ICR142 NGS validation series: a resource for orthogonal assessment of NGS analysis.

    Science.gov (United States)

    Ruark, Elise; Renwick, Anthony; Clarke, Matthew; Snape, Katie; Ramsay, Emma; Elliott, Anna; Hanks, Sandra; Strydom, Ann; Seal, Sheila; Rahman, Nazneen

    2016-01-01

    To provide a useful community resource for orthogonal assessment of NGS analysis software, we present the ICR142 NGS validation series. The dataset includes high-quality exome sequence data from 142 samples together with Sanger sequence data at 730 sites; 409 sites with variants and 321 sites at which variants were called by an NGS analysis tool, but no variant is present in the corresponding Sanger sequence. The dataset includes 286 indel variants and 275 negative indel sites, and thus the ICR142 validation dataset is of particular utility in evaluating indel calling performance. The FASTQ files and Sanger sequence results can be accessed in the European Genome-phenome Archive under the accession number EGAS00001001332.

  1. Tasmanitachoides Erwin glabellus n. sp. from North Queensland, Australia, with a note on Tasmanitachoides lutus (Darlington (Insecta, Coleoptera, Carabidae, Bembidiinae

    Directory of Open Access Journals (Sweden)

    Baehr, M.

    2001-01-01

    Full Text Available A new species of the genus Tasmanitachoides Erwin from North Queensland is described: T. glabellus n. sp. The species belongs to the T. murrumbidgensis¿group of species that is characterized by its distinctly impressed clypeus, but it is distinguished from all related species by its glabrous body surface. It is the first Tasmanitachoides from northern Australia to be found in rainforest on high mountains and has thus probably preserved the original habits of the genus that are still characteristic for those species living in southern temperate regions of Australia. Tasmanitachoides lutus (Darlington so far known from the type locality in southern New South Wales and from the holotype only, is now recorded from eastern Victoria.

  2. NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.

    Science.gov (United States)

    May, Ali; Abeln, Sanne; Buijs, Mark J; Heringa, Jaap; Crielaard, Wim; Brandt, Bernd W

    2015-07-01

    Massively parallel sequencing of microbial genetic markers (MGMs) is used to uncover the species composition in a multitude of ecological niches. These sequencing runs often contain a sample with known composition that can be used to evaluate the sequencing quality or to detect novel sequence variants. With NGS-eval, the reads from such (mock) samples can be used to (i) explore the differences between the reads and their references and to (ii) estimate the sequencing error rate. This tool maps these reads to references and calculates as well as visualizes the different types of sequencing errors. Clearly, sequencing errors can only be accurately calculated if the reference sequences are correct. However, even with known strains, it is not straightforward to select the correct references from databases. We previously analysed a pyrosequencing dataset from a mock sample to estimate sequencing error rates and detected sequence variants in our mock community, allowing us to obtain an accurate error estimation. Here, we demonstrate the variant detection and error analysis capability of NGS-eval with Illumina MiSeq reads from the same mock community. While tailored towards the field of metagenomics, this server can be used for any type of MGM-based reads. NGS-eval is available at http://www.ibi.vu.nl/programs/ngsevalwww/.

  3. Orthogonal NGS for High Throughput Clinical Diagnostics.

    Science.gov (United States)

    Chennagiri, Niru; White, Eric J; Frieden, Alexander; Lopez, Edgardo; Lieber, Daniel S; Nikiforov, Anastasia; Ross, Tristen; Batorsky, Rebecca; Hansen, Sherry; Lip, Va; Luquette, Lovelace J; Mauceli, Evan; Margulies, David; Milos, Patrice M; Napolitano, Nichole; Nizzari, Marcia M; Yu, Timothy; Thompson, John F

    2016-04-19

    Next generation sequencing is a transformative technology for discovering and diagnosing genetic disorders. However, high-throughput sequencing remains error-prone, necessitating variant confirmation in order to meet the exacting demands of clinical diagnostic sequencing. To address this, we devised an orthogonal, dual platform approach employing complementary target capture and sequencing chemistries to improve speed and accuracy of variant calls at a genomic scale. We combined DNA selection by bait-based hybridization followed by Illumina NextSeq reversible terminator sequencing with DNA selection by amplification followed by Ion Proton semiconductor sequencing. This approach yields genomic scale orthogonal confirmation of ~95% of exome variants. Overall variant sensitivity improves as each method covers thousands of coding exons missed by the other. We conclude that orthogonal NGS offers improvements in variant calling sensitivity when two platforms are used, better specificity for variants identified on both platforms, and greatly reduces the time and expense of Sanger follow-up, thus enabling physicians to act on genomic results more quickly.

  4. CRCDA--Comprehensive resources for cancer NGS data analysis.

    Science.gov (United States)

    Thangam, Manonanthini; Gopal, Ramesh Kumar

    2015-01-01

    Next generation sequencing (NGS) innovations put a compelling landmark in life science and changed the direction of research in clinical oncology with its productivity to diagnose and treat cancer. The aim of our portal comprehensive resources for cancer NGS data analysis (CRCDA) is to provide a collection of different NGS tools and pipelines under diverse classes with cancer pathways and databases and furthermore, literature information from PubMed. The literature data was constrained to 18 most common cancer types such as breast cancer, colon cancer and other cancers that exhibit in worldwide population. NGS-cancer tools for the convenience have been categorized into cancer genomics, cancer transcriptomics, cancer epigenomics, quality control and visualization. Pipelines for variant detection, quality control and data analysis were listed to provide out-of-the box solution for NGS data analysis, which may help researchers to overcome challenges in selecting and configuring individual tools for analysing exome, whole genome and transcriptome data. An extensive search page was developed that can be queried by using (i) type of data [literature, gene data and sequence read archive (SRA) data] and (ii) type of cancer (selected based on global incidence and accessibility of data). For each category of analysis, variety of tools are available and the biggest challenge is in searching and using the right tool for the right application. The objective of the work is collecting tools in each category available at various places and arranging the tools and other data in a simple and user-friendly manner for biologists and oncologists to find information easier. To the best of our knowledge, we have collected and presented a comprehensive package of most of the resources available in cancer for NGS data analysis. Given these factors, we believe that this website will be an useful resource to the NGS research community working on cancer. Database URL: http://bioinfo.au-kbc.org.in/ngs/ngshome.html.

  5. Next generation sequencing (NGS)technologies and applications

    Energy Technology Data Exchange (ETDEWEB)

    Vuyisich, Momchilo [Los Alamos National Laboratory

    2012-09-11

    NGS technology overview: (1) NGS library preparation - Nucleic acids extraction, Sample quality control, RNA conversion to cDNA, Addition of sequencing adapters, Quality control of library; (2) Sequencing - Clonal amplification of library fragments, (except PacBio), Sequencing by synthesis, Data output (reads and quality); and (3) Data analysis - Read mapping, Genome assembly, Gene expression, Operon structure, sRNA discovery, and Epigenetic analyses.

  6. Airborne Gravity Data Enhances NGS Experimental Gravimetric Geoid in Alaska

    Science.gov (United States)

    Holmes, S. A.; Childers, V. A.; Li, X.; Roman, D. R.

    2014-12-01

    The U.S. National Geodetic Survey [NGS], through their Gravity for the Redefinition of the American Vertical Datum [GRAV-D] program, continues to update its gravimetry holdings by flying new airborne gravity surveys over a large fraction of the USA and its territories. By 2022, NGS intends that all orthometric heights in the USA will be determined in the field by using a reliable national gravimetric geoid model to transform from geodetic heights obtained from GPS. Several airborne campaigns have already been flown over Alaska and its coastline. Some of this Alaskan coastal data have been incorporated into a new NGS experimental geoid model - xGEOID14. The xGEOID14 model is the first in a series of annual experimental geoid models that will incorporate NGS GRAV-D airborne data. This series provides a useful benchmark for assessing and improving current techniques by which the airborne and land-survey data are filtered and cleaned, and then combined with satellite gravity models, elevation data (etc.) with the ultimate aim of computing a geoid model that can support a national physical height system by 2022. Here we will examine the NGS GRAV-D airborne data in Alaska, and assess its contribution to xGEOID14. Future prospects for xGEOID15 will also be considered.

  7. NGS catalog: A database of next generation sequencing studies in humans.

    Science.gov (United States)

    Xia, Junfeng; Wang, Qingguo; Jia, Peilin; Wang, Bing; Pao, William; Zhao, Zhongming

    2012-06-01

    Next generation sequencing (NGS) technologies have been rapidly applied in biomedical and biological research since its advent only a few years ago, and they are expected to advance at an unprecedented pace in the following years. To provide the research community with a comprehensive NGS resource, we have developed the database Next Generation Sequencing Catalog (NGS Catalog, http://bioinfo.mc.vanderbilt.edu/NGS/index.html), a continually updated database that collects, curates and manages available human NGS data obtained from published literature. NGS Catalog deposits publication information of NGS studies and their mutation characteristics (SNVs, small insertions/deletions, copy number variations, and structural variants), as well as mutated genes and gene fusions detected by NGS. Other functions include user data upload, NGS general analysis pipelines, and NGS software. NGS Catalog is particularly useful for investigators who are new to NGS but would like to take advantage of these powerful technologies for their own research. Finally, based on the data deposited in NGS Catalog, we summarized features and findings from whole exome sequencing, whole genome sequencing, and transcriptome sequencing studies for human diseases or traits.

  8. Estimating IBD tracts from low coverage NGS data

    DEFF Research Database (Denmark)

    Garrett Vieira, Filipe Jorge; Albrechtsen, Anders; Nielsen, Rasmus

    2016-01-01

    that the new method provides a marked increase in accuracy even at low coverage. AVAILABILITY AND IMPLEMENTATION: The methods presented in this work were implemented in C/C ++ and are freely available for non-commercial use from https://github.com/fgvieira/ngsF-HMM CONTACT: fgvieira@snm.ku.dk SUPPLEMENTARY...

  9. Genetic counselors' (GC) knowledge, awareness, understanding of clinical next-generation sequencing (NGS) genomic testing.

    Science.gov (United States)

    Boland, P M; Ruth, K; Matro, J M; Rainey, K L; Fang, C Y; Wong, Y N; Daly, M B; Hall, M J

    2015-12-01

    Genomic tests are increasingly complex, less expensive, and more widely available with the advent of next-generation sequencing (NGS). We assessed knowledge and perceptions among genetic counselors pertaining to NGS genomic testing via an online survey. Associations between selected characteristics and perceptions were examined. Recent education on NGS testing was common, but practical experience limited. Perceived understanding of clinical NGS was modest, specifically concerning tumor testing. Greater perceived understanding of clinical NGS testing correlated with more time spent in cancer-related counseling, exposure to NGS testing, and NGS-focused education. Substantial disagreement about the role of counseling for tumor-based testing was seen. Finally, a majority of counselors agreed with the need for more education about clinical NGS testing, supporting this approach to optimizing implementation.

  10. NGS Catalog: A Database of Next Generation Sequencing Studies in Humans

    OpenAIRE

    Xia, Junfeng; Wang, Qingguo; Jia, Peilin; Wang, Bing; Pao, William; Zhao, Zhongming

    2012-01-01

    Next generation sequencing (NGS) technologies have been rapidly applied in biomedical and biological research since its advent only a few years ago, and they are expected to advance at an unprecedented pace in the following years. To provide the research community with a comprehensive NGS resource, we have developed the database Next Generation Sequencing Catalog (NGS Catalog, http://bioinfo.mc.vanderbilt.edu/NGS/index.html), a continually updated database that collects, curates and manages a...

  11. VACUUM TRAP

    Science.gov (United States)

    Gordon, H.S.

    1959-09-15

    An improved adsorption vacuum trap for use in vacuum systems was designed. The distinguishing feature is the placement of a plurality of torsionally deformed metallic fins within a vacuum jacket extending from the walls to the central axis so that substantially all gas molecules pass through the jacket will impinge upon the fin surfaces. T fins are heated by direct metallic conduction, thereby ol taining a uniform temperature at the adeorbing surfaces so that essentially all of the condensible impurities from the evacuating gas are removed from the vacuum system.

  12. Vacuum Technology

    Energy Technology Data Exchange (ETDEWEB)

    Biltoft, P J

    2004-10-15

    The environmental condition called vacuum is created any time the pressure of a gas is reduced compared to atmospheric pressure. On earth we typically create a vacuum by connecting a pump capable of moving gas to a relatively leak free vessel. Through operation of the gas pump the number of gas molecules per unit volume is decreased within the vessel. As soon as one creates a vacuum natural forces (in this case entropy) work to restore equilibrium pressure; the practical effect of this is that gas molecules attempt to enter the evacuated space by any means possible. It is useful to think of vacuum in terms of a gas at a pressure below atmospheric pressure. In even the best vacuum vessels ever created there are approximately 3,500,000 molecules of gas per cubic meter of volume remaining inside the vessel. The lowest pressure environment known is in interstellar space where there are approximately four molecules of gas per cubic meter. Researchers are currently developing vacuum technology components (pumps, gauges, valves, etc.) using micro electro mechanical systems (MEMS) technology. Miniature vacuum components and systems will open the possibility for significant savings in energy cost and will open the doors to advances in electronics, manufacturing and semiconductor fabrication. In conclusion, an understanding of the basic principles of vacuum technology as presented in this summary is essential for the successful execution of all projects that involve vacuum technology. Using the principles described above, a practitioner of vacuum technology can design a vacuum system that will achieve the project requirements.

  13. Hydrology, DARLINGTON COUNTY, SC

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Hydrology data include spatial datasets and data tables necessary for documenting the hydrologic procedures for estimating flood discharges for a flood insurance...

  14. Hydraulics, DARLINGTON COUNTY, SC

    Data.gov (United States)

    Federal Emergency Management Agency, Department of Homeland Security — Recent developments in digital terrain and geospatial database management technology make it possible to protect this investment for existing and future projects to...

  15. Next generation sequencing (NGS): a golden tool in forensic toolkit.

    Science.gov (United States)

    Aly, S M; Sabri, D M

    2015-01-01

    The DNA analysis is a cornerstone in contemporary forensic sciences. DNA sequencing technologies are powerful tools that enrich molecular sciences in the past based on Sanger sequencing and continue to glowing these sciences based on Next generation sequencing (NGS). Next generation sequencing has excellent potential to flourish and increase the molecular applications in forensic sciences by jumping over the pitfalls of the conventional method of sequencing. The main advantages of NGS compared to conventional method that it utilizes simultaneously a large number of genetic markers with high-resolution of genetic data. These advantages will help in solving several challenges such as mixture analysis and dealing with minute degraded samples. Based on these new technologies, many markers could be examined to get important biological data such as age, geographical origins, tissue type determination, external visible traits and monozygotic twins identification. It also could get data related to microbes, insects, plants and soil which are of great medico-legal importance. Despite the dozens of forensic research involving NGS, there are requirements before using this technology routinely in forensic cases. Thus, there is a great need to more studies that address robustness of these techniques. Therefore, this work highlights the applications of forensic sciences in the era of massively parallel sequencing.

  16. Vacuum mechatronics

    Science.gov (United States)

    Hackwood, Susan; Belinski, Steven E.; Beni, Gerardo

    1989-01-01

    The discipline of vacuum mechatronics is defined as the design and development of vacuum-compatible computer-controlled mechanisms for manipulating, sensing and testing in a vacuum environment. The importance of vacuum mechatronics is growing with an increased application of vacuum in space studies and in manufacturing for material processing, medicine, microelectronics, emission studies, lyophylisation, freeze drying and packaging. The quickly developing field of vacuum mechatronics will also be the driving force for the realization of an advanced era of totally enclosed clean manufacturing cells. High technology manufacturing has increasingly demanding requirements for precision manipulation, in situ process monitoring and contamination-free environments. To remove the contamination problems associated with human workers, the tendency in many manufacturing processes is to move towards total automation. This will become a requirement in the near future for e.g., microelectronics manufacturing. Automation in ultra-clean manufacturing environments is evolving into the concept of self-contained and fully enclosed manufacturing. A Self Contained Automated Robotic Factory (SCARF) is being developed as a flexible research facility for totally enclosed manufacturing. The construction and successful operation of a SCARF will provide a novel, flexible, self-contained, clean, vacuum manufacturing environment. SCARF also requires very high reliability and intelligent control. The trends in vacuum mechatronics and some of the key research issues are reviewed.

  17. Vacuum extraction

    DEFF Research Database (Denmark)

    Maagaard, Mathilde; Oestergaard, Jeanett; Johansen, Marianne

    2012-01-01

    Objectives. To develop and validate an Objective Structured Assessment of Technical Skills (OSATS) scale for vacuum extraction. Design. Two part study design: Primarily, development of a procedure-specific checklist for vacuum extraction. Hereafter, validationof the developed OSATS scale for vacuum...... extraction in a prospective observational study. Setting. Rigshospitalet, University Hospital of Copenhagen. Population. For development an obstetric expert from each labor ward in Denmark (28 departments) were invited to participate. For validation nine first-year residents and ten chief physicians...... with daily work in the obstetric field were tested. Methods. The Delphi method was used for development of the scale. In a simulated vacuum extraction scenario first-year residents and obstetric chief physicians were rated using the developed OSATS scale for vacuum extraction to test construct validity...

  18. Vacuum extraction

    DEFF Research Database (Denmark)

    Maagaard, Mathilde; Oestergaard, Jeanett; Johansen, Marianne

    2012-01-01

    Objectives. To develop and validate an Objective Structured Assessment of Technical Skills (OSATS) scale for vacuum extraction. Design. Two part study design: Primarily, development of a procedure-specific checklist for vacuum extraction. Hereafter, validationof the developed OSATS scale for vacuum...... extraction in a prospective observational study. Setting. Rigshospitalet, University Hospital of Copenhagen. Population. For development an obstetric expert from each labor ward in Denmark (28 departments) were invited to participate. For validation nine first-year residents and ten chief physicians...... with daily work in the obstetric field were tested. Methods. The Delphi method was used for development of the scale. In a simulated vacuum extraction scenario first-year residents and obstetric chief physicians were rated using the developed OSATS scale for vacuum extraction to test construct validity...

  19. Gravitational vacuum

    Science.gov (United States)

    Grigoryan, L. S.; Saakyan, G. S.

    1984-09-01

    The existence of a special gravitational vacuum is considered in this paper. A phenomenological method differing from the traditional Einsteinian formalization is utilized. Vacuum, metric and matter form a complex determined by field equations and at great distances from gravitational masses vacuum effects are small but could be large in powerful fields. Singularities and black holes justify the approach as well as the Ambartsmyan theory concerning the existence of supermassive and superdense prestallar bodies that then disintegrate. A theory for these superdense bodies is developed involving gravitational field equations that describe the vacuum by an energy momentum tensor and define the field and mass distribution. Computations based on the theory for gravitational radii with incompressible liquid models adequately reflecting real conditions indicate that a gravitational vacuum could have considerable effects on superdense stars and could have radical effects for very large masses.

  20. An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology

    OpenAIRE

    Jian Li; Aarif Mohamed Nazeer Batcha; Björn Grüning; Mansmann, Ulrich R.

    2016-01-01

    Next-generation sequencing (NGS) technologies that have advanced rapidly in the past few years possess the potential to classify diseases, decipher the molecular code of related cell processes, identify targets for decision-making on targeted therapy or prevention strategies, and predict clinical treatment response. Thus, NGS is on its way to revolutionize oncology. With the help of NGS, we can draw a finer map for the genetic basis of diseases and can improve our understanding of diagnostic ...

  1. An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.

    Science.gov (United States)

    Li, Jian; Batcha, Aarif Mohamed Nazeer; Grüning, Björn; Mansmann, Ulrich R

    2015-01-01

    Next-generation sequencing (NGS) technologies that have advanced rapidly in the past few years possess the potential to classify diseases, decipher the molecular code of related cell processes, identify targets for decision-making on targeted therapy or prevention strategies, and predict clinical treatment response. Thus, NGS is on its way to revolutionize oncology. With the help of NGS, we can draw a finer map for the genetic basis of diseases and can improve our understanding of diagnostic and prognostic applications and therapeutic methods. Despite these advantages and its potential, NGS is facing several critical challenges, including reduction of sequencing cost, enhancement of sequencing quality, improvement of technical simplicity and reliability, and development of semiautomated and integrated analysis workflow. In order to address these challenges, we conducted a literature research and summarized a four-stage NGS workflow for providing a systematic review on NGS-based analysis, explaining the strength and weakness of diverse NGS-based software tools, and elucidating its potential connection to individualized medicine. By presenting this four-stage NGS workflow, we try to provide a minimal structural layout required for NGS data storage and reproducibility.

  2. NGS WFSs module for MAORY at E-ELT

    Science.gov (United States)

    Esposito, S.; Agapito, G.; Antichi, J.; Bonanno, A.; Carbonaro, L.; Giordano, C.; Spanò, P.

    We report on the natural guide star (NGS) wavefront sensors (WFS) module for MAORY, the multi-cojugate adaptive optics (MCAO) system for the ESO E-ELT. Three low-order, near-infrared (H-band), Shack-Hartmann sensors provide fast acquisition of the first 5 modes (tip, tilt, focus, astigmatism) on 3 natural guide stars over a 160 arcsec field of view. Three moderate-order (20x20), visible (600-800 nm), pyramid WFSs provide the slow Truth sensing to correct LGS wavefront estimates of low-order modes. These sensors are mounted onto three R-theta stages to patrol the field of view. The module is also equipped with a retractable, on-axis, high-order (80x80), visible, pyramid WFS for the single-conjugate AO (SCAO) mode of MAORY and MICADO. The visible WFSs share the same 80x80 pyramid WFS design. This choice enables also a MCAO NGS capability. Simulations show that Strehl ratios (SR) over 40% are reached with MCAO and three, 2x2 sub-apertures, NIR low-order WFSs working with H-mag=20 reference stars. In SCAO mode, 90% SR for a 8mag stars with a contrast down to 10-5, and 45% SR for a 16mag star, are achieved.

  3. Vacuum Incalescence

    CERN Document Server

    Intravaia, F

    2016-01-01

    In quantum theory the vacuum is defined as a state of minimum energy that is devoid of particles but still not completely empty. It is perhaps more surprising that its definition depends on the geometry of the system and on the trajectory of an observer through space-time. Along these lines we investigate the case of an atom flying at constant velocity near a planar surface. Using general concepts of statistical mechanics it is shown that the motion-modified interaction with the electromagnetic vacuum is formally equivalent to the interaction with a thermal field having an effective temperature determined by the atom's velocity and distance from the surface. This result suggests new ways to experimentally investigate the properties of the quantum vacuum in non-equilibrium systems and effects such as quantum friction.

  4. Vacuum Valve

    CERN Multimedia

    1974-01-01

    This valve was used in the Intersecting Storage Rings (ISR) to protect against the shock waves that would be caused if air were to enter the vacuum tube. Some of the ISR chambers were very fragile, with very thin walls - a design required by physicists on the lookout for new particles.

  5. IPv6与下一代服务(NGS)

    Institute of Scientific and Technical Information of China (English)

    雷振洲

    2005-01-01

    大家知道现在我们都在走PSTN电信网络NGN,下一代Internet就是NGI,移动网要走向3G/B3G.那么他们为什么要走向NGS,实际上特别是上个世纪90年代的移动通信告诉我们现在的网络不能适应将来的要求,为什么?互联网的大发展说明人对信息的需求、对数据的需求、对未来更有价值的服务应用的需求越来越高.移动的大发展说明移动性对个性化对无所不在的需求是越来越强烈了.

  6. Clinical validation of NGS technology for HLA: An early adopter's perspective.

    Science.gov (United States)

    Weimer, Eric T

    2016-10-01

    Clinical validation of NGS for HLA typing has been a topic of interest with many laboratories investigating the merits. NGS has proven effective at reducing ambiguities and costs while providing more detailed information on HLA genes not previously sequenced. The ability of NGS to multiplex many patients within a single run presents unique challenges and sequencing new regions of HLA genes requires application of our knowledge of genetics to accurately determine HLA typing. This review represents my laboratory's experience in validation of NGS for HLA typing. It describes the obstacles faced with validation of NGS and is broken down into pre-analytic, analytic, and post-analytic challenges. Each section includes solutions to address them.

  7. Normal and compound poisson approximations for pattern occurrences in NGS reads.

    Science.gov (United States)

    Zhai, Zhiyuan; Reinert, Gesine; Song, Kai; Waterman, Michael S; Luan, Yihui; Sun, Fengzhu

    2012-06-01

    Next generation sequencing (NGS) technologies are now widely used in many biological studies. In NGS, sequence reads are randomly sampled from the genome sequence of interest. Most computational approaches for NGS data first map the reads to the genome and then analyze the data based on the mapped reads. Since many organisms have unknown genome sequences and many reads cannot be uniquely mapped to the genomes even if the genome sequences are known, alternative analytical methods are needed for the study of NGS data. Here we suggest using word patterns to analyze NGS data. Word pattern counting (the study of the probabilistic distribution of the number of occurrences of word patterns in one or multiple long sequences) has played an important role in molecular sequence analysis. However, no studies are available on the distribution of the number of occurrences of word patterns in NGS reads. In this article, we build probabilistic models for the background sequence and the sampling process of the sequence reads from the genome. Based on the models, we provide normal and compound Poisson approximations for the number of occurrences of word patterns from the sequence reads, with bounds on the approximation error. The main challenge is to consider the randomness in generating the long background sequence, as well as in the sampling of the reads using NGS. We show the accuracy of these approximations under a variety of conditions for different patterns with various characteristics. Under realistic assumptions, the compound Poisson approximation seems to outperform the normal approximation in most situations. These approximate distributions can be used to evaluate the statistical significance of the occurrence of patterns from NGS data. The theory and the computational algorithm for calculating the approximate distributions are then used to analyze ChIP-Seq data using transcription factor GABP. Software is available online (www-rcf.usc.edu/∼fsun/Programs/NGS_motif_power/NGS

  8. Vacuum measurement on vacuum packaged MEMS devices

    Energy Technology Data Exchange (ETDEWEB)

    Gan Zhiyin; Lin Dong; Wang Xuefang; Chenggang; Zhang Honghai; Liu Sheng [Institute of Microsystems and Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, China, 430074 (China)

    2007-07-15

    This paper investigates the relationship between the resonance impedance of a tuning fork quartz oscillator and the small size cavity vacuum pressure and develops an on-line vacuum measurement system to track real-time vacuum pressure in MEMS devices. Furthermore, authors completely analyze all facts that affect the resonance impedance. A set of metal vacuum packaged devices have been monitored for more than 10 months using this on-line vacuum measurement system. The results indicate that it is very critical to investigate vacuum packaging processes, reliability and durability of the vacuum devices by using this on-line vacuum measurement system.

  9. Cas-analyzer: an online tool for assessing genome editing results using NGS data.

    Science.gov (United States)

    Park, Jeongbin; Lim, Kayeong; Kim, Jin-Soo; Bae, Sangsu

    2017-01-15

    Genome editing with programmable nucleases has been widely adopted in research and medicine. Next generation sequencing (NGS) platforms are now widely used for measuring the frequencies of mutations induced by CRISPR-Cas9 and other programmable nucleases. Here, we present an online tool, Cas-Analyzer, a JavaScript-based implementation for NGS data analysis. Because Cas-Analyzer is completely used at a client-side web browser on-the-fly, there is no need to upload very large NGS datasets to a server, a time-consuming step in genome editing analysis. Currently, Cas-Analyzer supports various programmable nucleases, including single nucleases and paired nucleases.

  10. Using REDItools to Detect RNA Editing Events in NGS Datasets.

    Science.gov (United States)

    Picardi, Ernesto; D'Erchia, Anna Maria; Montalvo, Antonio; Pesole, Graziano

    2015-03-09

    RNA editing is a post-transcriptional/co-transcriptional molecular phenomenon whereby a genetic message is modified from the corresponding DNA template by means of substitutions, insertions, and/or deletions. It occurs in a variety of organisms and different cellular locations through evolutionally and biochemically unrelated proteins. RNA editing has a plethora of biological effects including the modulation of alternative splicing and fine-tuning of gene expression. RNA editing events by base substitutions can be detected on a genomic scale by NGS technologies through the REDItools package, an ad hoc suite of Python scripts to study RNA editing using RNA-Seq and DNA-Seq data or RNA-Seq data alone. REDItools implement effective filters to minimize biases due to sequencing errors, mapping errors, and SNPs. The package is freely available at Google Code repository (http://code.google.com/p/reditools/) and released under the MIT license. In the present unit we show three basic protocols corresponding to three main REDItools scripts.

  11. The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.

    Science.gov (United States)

    Li, Jing-Woei; Bolser, Dan; Manske, Magnus; Giorgi, Federico Manuel; Vyahhi, Nikolay; Usadel, Björn; Clavijo, Bernardo J; Chan, Ting-Fung; Wong, Nathalie; Zerbino, Daniel; Schneider, Maria Victoria

    2013-09-01

    Next-generation sequencing (NGS) is increasingly being adopted as the backbone of biomedical research. With the commercialization of various affordable desktop sequencers, NGS will be reached by increasing numbers of cellular and molecular biologists, necessitating community consensus on bioinformatics protocols to tackle the exponential increase in quantity of sequence data. The current resources for NGS informatics are extremely fragmented. Finding a centralized synthesis is difficult. A multitude of tools exist for NGS data analysis; however, none of these satisfies all possible uses and needs. This gap in functionality could be filled by integrating different methods in customized pipelines, an approach helped by the open-source nature of many NGS programmes. Drawing from community spirit and with the use of the Wikipedia framework, we have initiated a collaborative NGS resource: The NGS WikiBook. We have collected a sufficient amount of text to incentivize a broader community to contribute to it. Users can search, browse, edit and create new content, so as to facilitate self-learning and feedback to the community. The overall structure and style for this dynamic material is designed for the bench biologists and non-bioinformaticians. The flexibility of online material allows the readers to ignore details in a first read, yet have immediate access to the information they need. Each chapter comes with practical exercises so readers may familiarize themselves with each step. The NGS WikiBook aims to create a collective laboratory book and protocol that explains the key concepts and describes best practices in this fast-evolving field.

  12. Vacuum phenomenon.

    Science.gov (United States)

    Yanagawa, Youichi; Ohsaka, Hiromichi; Jitsuiki, Kei; Yoshizawa, Toshihiko; Takeuchi, Ikuto; Omori, Kazuhiko; Oode, Yasumasa; Ishikawa, Kouhei

    2016-08-01

    This article describes the theory of the formation of the vacuum phenomenon (VP), the detection of the VP, the different medical causes, the different locations of the presentation of the VP, and the differential diagnoses. In the human body, the cavitation effect is recognized on radiological studies; it is called the VP. The mechanism responsible for the formation of the VP is as follows: if an enclosed tissue space is allowed to expand as a rebound phenomenon after an external impact, the volume within the enclosed space will increase. In the setting of expanding volume, the pressure within the space will decrease. The solubility of the gas in the enclosed space will decrease as the pressure of the space decreases. Decreased solubility allows a gas to leave a solution. Clinically, the pathologies associated with the VP have been reported to mainly include the normal joint motion, degeneration of the intervertebral discs or joints, and trauma. The frequent use of CT for trauma patients and the high spatial resolution of CT images might produce the greatest number of chances to detect the VP in trauma patients. The VP is observed at locations that experience a traumatic impact; thus, an analysis of the VP may be useful for elucidating the mechanism of an injury. When the VP is located in the abdomen, it is important to include perforation of the digestive tract in the differential diagnosis. The presence of the VP in trauma patients does not itself influence the final outcome.

  13. Vacuum mechatronics. Proceedings.

    Science.gov (United States)

    Belinski, S. E.; Shirazi, M.; Hackwood, S.; Beni, G.

    The discipline of vacuum mechatronics is the design and development of vacuum-compatible, computer-controlled mechanisms for manipulating, sensing and testing in a vacuum environment. Vacuum mechantronics is relevant to research engineers in integrated circuit manufacturing, surface physics, food processing, biotechnology, materials handling, space sciences and manufacturing.

  14. QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation.

    Science.gov (United States)

    Wagle, Prerana; Nikolić, Miloš; Frommolt, Peter

    2015-07-01

    Next-Generation Sequencing (NGS) has emerged as a widely used tool in molecular biology. While time and cost for the sequencing itself are decreasing, the analysis of the massive amounts of data remains challenging. Since multiple algorithmic approaches for the basic data analysis have been developed, there is now an increasing need to efficiently use these tools to obtain results in reasonable time. We have developed QuickNGS, a new workflow system for laboratories with the need to analyze data from multiple NGS projects at a time. QuickNGS takes advantage of parallel computing resources, a comprehensive back-end database, and a careful selection of previously published algorithmic approaches to build fully automated data analysis workflows. We demonstrate the efficiency of our new software by a comprehensive analysis of 10 RNA-Seq samples which we can finish in only a few minutes of hands-on time. The approach we have taken is suitable to process even much larger numbers of samples and multiple projects at a time. Our approach considerably reduces the barriers that still limit the usability of the powerful NGS technology and finally decreases the time to be spent before proceeding to further downstream analysis and interpretation of the data.

  15. Targeted NGS meets expert clinical characterization: Efficient diagnosis of spastic paraplegia type 11.

    Science.gov (United States)

    Castro-Fernández, Cristina; Arias, Manuel; Blanco-Arias, Patricia; Santomé-Collazo, Luis; Amigo, Jorge; Carracedo, Ángel; Sobrido, Maria-Jesús

    2015-06-01

    Next generation sequencing (NGS) is transforming the diagnostic approach for neurological disorders, since it allows simultaneous analysis of hundreds of genes, even based on just a broad, syndromic patient categorization. However, such an approach bears a high risk of incidental and uncertain genetic findings. We report a patient with spastic paraplegia whose comprehensive neurological and imaging examination raised a high clinical suspicion of SPG11. Thus, although our NGS pipeline for this group of disorders includes gene panel and exome sequencing, in this sample only the spatacsin gene region was captured and subsequently searched for mutations. Two probably pathogenic variants were quickly and clearly identified, confirming the diagnosis of SPG11. This case illustrates how combination of expert clinical characterization with highly oriented NGS protocols leads to a fast, cost-efficient diagnosis, minimizing the risk of findings with unclear significance.

  16. NGS-Trex: an automatic analysis workflow for RNA-Seq data.

    Science.gov (United States)

    Boria, Ilenia; Boatti, Lara; Saggese, Igor; Mignone, Flavio

    2015-01-01

    RNA-Seq technology allows the rapid analysis of whole transcriptomes taking advantage of next-generation sequencing platforms. Moreover with the constant decrease of the cost of NGS analysis RNA-Seq is becoming very popular and widespread. Unfortunately data analysis is quite demanding in terms of bioinformatic skills and infrastructures required, thus limiting the potential users of this method. Here we describe the complete analysis of sample data from raw sequences to data mining of results by using NGS-Trex platform, a low user interaction, fully automatic analysis workflow. Used through a web interface, NGS-Trex processes data and profiles the transcriptome of the samples identifying expressed genes, transcripts, and new and known splice variants. It also detects differentially expressed genes and transcripts across different experiments.

  17. Targeted NGS meets expert clinical characterization: Efficient diagnosis of spastic paraplegia type 11

    Directory of Open Access Journals (Sweden)

    Cristina Castro-Fernández

    2015-06-01

    Full Text Available Next generation sequencing (NGS is transforming the diagnostic approach for neurological disorders, since it allows simultaneous analysis of hundreds of genes, even based on just a broad, syndromic patient categorization. However, such an approach bears a high risk of incidental and uncertain genetic findings. We report a patient with spastic paraplegia whose comprehensive neurological and imaging examination raised a high clinical suspicion of SPG11. Thus, although our NGS pipeline for this group of disorders includes gene panel and exome sequencing, in this sample only the spatacsin gene region was captured and subsequently searched for mutations. Two probably pathogenic variants were quickly and clearly identified, confirming the diagnosis of SPG11. This case illustrates how combination of expert clinical characterization with highly oriented NGS protocols leads to a fast, cost-efficient diagnosis, minimizing the risk of findings with unclear significance.

  18. KNIME4NGS: a comprehensive toolbox for Next Generation Sequencing analysis.

    Science.gov (United States)

    Hastreiter, Maximilian; Jeske, Tim; Hoser, Jonathan; Kluge, Michael; Ahomaa, Kaarin; Friedl, Marie-Sophie; Kopetzky, Sebastian J; Quell, Jan-Dominik; Werner Mewes, H-; Küffner, Robert

    2017-01-09

    Analysis of Next Generation Sequencing (NGS) data requires the processing of large datasets by chaining various tools with complex input and output formats. In order to automate data analysis, we propose to standardize NGS tasks into modular workflows. This simplifies reliable handling and processing of NGS data, and corresponding solutions become substantially more reproducible and easier to maintain. Here, we present a documented, linux-based, toolbox of 42 processing modules that are combined to construct workflows facilitating a variety of tasks such as DNAseq and RNAseq analysis. We also describe important technical extensions. The high throughput executor (HTE) helps to increase the reliability and to reduce manual interventions when processing complex datasets. We also provide a dedicated binary manager that assists users in obtaining the modules' executables and keeping them up to date. As basis for this actively developed toolbox we use the workflow management software KNIME.

  19. ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

    Directory of Open Access Journals (Sweden)

    Cañizares Joaquin

    2011-06-01

    Full Text Available Abstract Background The possibilities offered by next generation sequencing (NGS platforms are revolutionizing biotechnological laboratories. Moreover, the combination of NGS sequencing and affordable high-throughput genotyping technologies is facilitating the rapid discovery and use of SNPs in non-model species. However, this abundance of sequences and polymorphisms creates new software needs. To fulfill these needs, we have developed a powerful, yet easy-to-use application. Results The ngs_backbone software is a parallel pipeline capable of analyzing Sanger, 454, Illumina and SOLiD (Sequencing by Oligonucleotide Ligation and Detection sequence reads. Its main supported analyses are: read cleaning, transcriptome assembly and annotation, read mapping and single nucleotide polymorphism (SNP calling and selection. In order to build a truly useful tool, the software development was paired with a laboratory experiment. All public tomato Sanger EST reads plus 14.2 million Illumina reads were employed to test the tool and predict polymorphism in tomato. The cleaned reads were mapped to the SGN tomato transcriptome obtaining a coverage of 4.2 for Sanger and 8.5 for Illumina. 23,360 single nucleotide variations (SNVs were predicted. A total of 76 SNVs were experimentally validated, and 85% were found to be real. Conclusions ngs_backbone is a new software package capable of analyzing sequences produced by NGS technologies and predicting SNVs with great accuracy. In our tomato example, we created a highly polymorphic collection of SNVs that will be a useful resource for tomato researchers and breeders. The software developed along with its documentation is freely available under the AGPL license and can be downloaded from http://bioinf.comav.upv.es/ngs_backbone/ or http://github.com/JoseBlanca/franklin.

  20. Genetic Architecture of Milk, Fat, Protein, Mastitis and Fertility Studied using NGS Data in Holstein Cattle

    DEFF Research Database (Denmark)

    Sahana, Goutam; Janss, Luc; Guldbrandtsen, Bernt;

    cattle using NGS variants. The analysis was done using a linear mixed model (LMM) and a Bayesian mixture model (BMM). The top 10 QTL identified by LMM analyses explained 22.61, 23.86, 10.88, 18.58 and 14.83% of the total genetic variance for these traits respectively. Trait-specific sets of 4,964 SNPs...... from NGS variants (most ‘associated’ SNP for each 0.5 Mbp bin) explained 81.0, 81.6, 85.0, 60.4 and 70.9% of total genetic variance for milk, fat, protein, mastitis and fertility indices when analyzed simultaneously by BMM...

  1. Indian Vacuum Society: The Indian Vacuum Society

    Science.gov (United States)

    Saha, T. K.

    2008-03-01

    The Indian Vacuum Society (IVS) was established in 1970. It has over 800 members including many from Industry and R & D Institutions spread throughout India. The society has an active chapter at Kolkata. The society was formed with the main aim to promote, encourage and develop the growth of Vacuum Science, Techniques and Applications in India. In order to achieve this aim it has conducted a number of short term courses at graduate and technician levels on vacuum science and technology on topics ranging from low vacuum to ultrahigh vacuum So far it has conducted 39 such courses at different parts of the country and imparted training to more than 1200 persons in the field. Some of these courses were in-plant training courses conducted on the premises of the establishment and designed to take care of the special needs of the establishment. IVS also regularly conducts national and international seminars and symposia on vacuum science and technology with special emphasis on some theme related to applications of vacuum. A large number of delegates from all over India take part in the deliberations of such seminars and symposia and present their work. IVS also arranges technical visits to different industries and research institutes. The society also helped in the UNESCO sponsored post-graduate level courses in vacuum science, technology and applications conducted by Mumbai University. The society has also designed a certificate and diploma course for graduate level students studying vacuum science and technology and has submitted a syllabus to the academic council of the University of Mumbai for their approval, we hope that some colleges affiliated to the university will start this course from the coming academic year. IVS extended its support in standardizing many of the vacuum instruments and played a vital role in helping to set up a Regional Testing Centre along with BARC. As part of the development of vacuum education, the society arranges the participation of

  2. A Web-Hosted R Workflow to Simplify and Automate the Analysis of 16S NGS Data

    Science.gov (United States)

    Next-Generation Sequencing (NGS) produces large data sets that include tens-of-thousands of sequence reads per sample. For analysis of bacterial diversity, 16S NGS sequences are typically analyzed in a workflow that containing best-of-breed bioinformatics packages that may levera...

  3. RepARK--de novo creation of repeat libraries from whole-genome NGS reads.

    Science.gov (United States)

    Koch, Philipp; Platzer, Matthias; Downie, Bryan R

    2014-05-01

    Generation of repeat libraries is a critical step for analysis of complex genomes. In the era of next-generation sequencing (NGS), such libraries are usually produced using a whole-genome shotgun (WGS) derived reference sequence whose completeness greatly influences the quality of derived repeat libraries. We describe here a de novo repeat assembly method--RepARK (Repetitive motif detection by Assembly of Repetitive K-mers)--which avoids potential biases by using abundant k-mers of NGS WGS reads without requiring a reference genome. For validation, repeat consensuses derived from simulated and real Drosophila melanogaster NGS WGS reads were compared to repeat libraries generated by four established methods. RepARK is orders of magnitude faster than the other methods and generates libraries that are: (i) composed almost entirely of repetitive motifs, (ii) more comprehensive and (iii) almost completely annotated by TEclass. Additionally, we show that the RepARK method is applicable to complex genomes like human and can even serve as a diagnostic tool to identify repetitive sequences contaminating NGS datasets.

  4. An Assessment of Airborn Gravimetry Collected under the NGS GRAV-D Project

    Science.gov (United States)

    Holmes, S. A.

    2009-12-01

    In the United States, the National Geodetic Survey [NGS] holds the official charter to maintain the vertical datum for the USA and its territories. This includes the responsibility to maintain a current geoid model for transforming between orthometric (H) and geodetic (h) heights. The latest (2009) NGS geoid model incorporates the latest GRACE-based satellite-only geopotential solutions, very-high-resolution digital elevation models [DEMs] derived from the Shuttle Radar Topography Mission [SRTM], and other additional data and processing improvements. This recent geoid model also benefited greatly from the prior release of the National Geospatial-Intelligence Agency’s [NGA] Earth Gravitational Model 2008 [EGM2008], which served as a computational reference field for the new geoid, but was also particularly useful for identifying and removing corrupted data from the NGS gravimetry database. Looking forwards, NGS intends to increase its efforts to refine and improve its future national geoid models. To this end, their ambitious "Gravity for the Re-definition of the American Datum” [GRAV-D] project aims to update the NGS gravimetry holdings by flying new airborn gravity surveys over a large fraction of the USA and it territories. Concurrent efforts will focus on developing new processing techniques for optimally incorporating improved gravimetry into the final geoid solution. To this end, the GRAV-D team has already flown several surveys in the Gulf of Mexico, Puerto Rico, US Virgin Islands, and Alaska. Testing and analysis aimed at calibrating and validating the preliminary survey data is already underway. The latest assessment of these recent efforts, including the extent to which this new data can be expected to contribute to an improved gravimetric geoid model, is presented here.

  5. Introduction and application of South NGS - 200 type of GPS%南方NGS-2O0型GPS测量系统及其应用

    Institute of Scientific and Technical Information of China (English)

    郭胜利

    2002-01-01

    GPS(Global Positioning System)是全球卫星定位系统的缩写.南方NGS-200型GPS测量系统及其在永定河干堤加固工程中的应用表明,GPS测量相对传统的作业模式具有突破性的改变,这一新技术的应用使得广大测量工作者从繁重的外业劳动中解脱出来,并且工作效率有了根本性的提高.

  6. Vacuum Energy: Myths and Reality

    OpenAIRE

    Volovik, G. E.

    2006-01-01

    We discuss the main myths related to the vacuum energy and cosmological constant, such as: ``unbearable lightness of space-time''; the dominating contribution of zero point energy of quantum fields to the vacuum energy; non-zero vacuum energy of the false vacuum; dependence of the vacuum energy on the overall shift of energy; the absolute value of energy only has significance for gravity; the vacuum energy depends on the vacuum content; cosmological constant changes after the phase transition...

  7. Physical Vacuum in Superconductors

    CERN Document Server

    de Matos, Clovis Jacinto

    2009-01-01

    Although experiments carried out by Jain et al. showed that the Cooper pairs obey the strong equivalence principle, The measurement of the Cooper pairs inertial mass by Tate et al. revealed an anomalous excess of mass. In the present paper we interpret these experimental results in the framework of an electromagnetic model of dark energy for the superconductors' vacuum. We argue that this physical vacuum is associated with a preferred frame. Ultimately from the conservation of energy for Cooper pairs we derive a model for a variable vacuum speed of light in the superconductors physical vacuum in relation with a possible breaking of the weak equivalence principle for Cooper pairs.

  8. Functional genomics of tomato: Opportunities and challenges in post-genome NGS era

    Indian Academy of Sciences (India)

    Rahul Kumar; Ashima Khurana

    2014-12-01

    The Tomato Genome Sequencing Project represented a landmark venture in the history of sequencing projects where both Sanger’s and next-generation sequencing (NGS) technologies were employed, and a highly accurate and one of the best assembled plant genomes along with a draft of the wild relative, Solanum pimpinellifolium, were released in 2012. However, the functional potential of the major portion of this newly generated resource is still undefined. The very first challenge before scientists working on tomato functional biology is to exploit this high-quality reference sequence for tapping of the wealth of genetic variants for improving agronomic traits in cultivated tomatoes. The sequence data generated recently by 150 Tomato Genome Consortium would further uncover the natural alleles present in different tomato genotypes. Therefore, we found it relevant to have a fresh outlook on tomato functional genomics in the context of application of NGS technologies in its post-genome sequencing phase. Herein, we provide an overview how NGS technologies vis-à-vis available reference sequence have assisted each other for their mutual improvement and how their combined use could further facilitate the development of other ‘omics’ tools, required to propel the Solanaceae research. Additionally, we highlight the challenges associated with the application of these cutting-edge technologies.

  9. HLA-genotyping of clinical specimens using Ion Torrent-based NGS.

    Science.gov (United States)

    Barone, Jonathan C; Saito, Katsuyuki; Beutner, Karl; Campo, Maria; Dong, Wei; Goswami, Chirayu P; Johnson, Erica S; Wang, Zi-Xuan; Hsu, Susan

    2015-12-01

    We have evaluated and validated the NXType™ workflow (One Lambda, Inc.) and the accompanying TypeStream™ software on the Ion Torrent Next Generation Sequencing (NGS) platform using a comprehensive testing panel. The panel consisted of 285 genomic DNA (gDNA) samples derived from four major ethnic populations and contained 59 PT samples and 226 clinical specimens. The total number of alleles from the six loci interrogated by NGS was 3420. This validation panel provided a wide range of HLA sequence variations including many rare alleles, new variants and homozygous alleles. The NXType™ system (reagents and software) was able to correctly genotype the vast majority of these specimens. The concordance rate between SBT-derived genotypes and those generated by TypeStream™ auto-analysis ranged from 99.5% to 99.8% for the HLA-A, B, C, DRB1 and DQB1 loci, and was 98.9% for HLA-DPB1. A strategy for data review was developed that would allow correction of most of the few remaining typing errors. The entire NGS workflow from gDNA amplification to genotype assignment could be completed within 3 working days. Through this validation study, the limitations and shortcomings of the platform, specific assay system, and software algorithm were also revealed for further evaluation and improvement.

  10. The variation game: Cracking complex genetic disorders with NGS and omics data.

    Science.gov (United States)

    Cui, Hongzhu; Dhroso, Andi; Johnson, Nathan; Korkin, Dmitry

    2015-06-01

    Tremendous advances in Next Generation Sequencing (NGS) and high-throughput omics methods have brought us one step closer towards mechanistic understanding of the complex disease at the molecular level. In this review, we discuss four basic regulatory mechanisms implicated in complex genetic diseases, such as cancer, neurological disorders, heart disease, diabetes, and many others. The mechanisms, including genetic variations, copy-number variations, posttranscriptional variations, and epigenetic variations, can be detected using a variety of NGS methods. We propose that malfunctions detected in these mechanisms are not necessarily independent, since these malfunctions are often found associated with the same disease and targeting the same gene, group of genes, or functional pathway. As an example, we discuss possible rewiring effects of the cancer-associated genetic, structural, and posttranscriptional variations on the protein-protein interaction (PPI) network centered around P53 protein. The review highlights multi-layered complexity of common genetic disorders and suggests that integration of NGS and omics data is a critical step in developing new computational methods capable of deciphering this complexity.

  11. Development of a high-resolution NGS-based HLA-typing and analysis pipeline.

    Science.gov (United States)

    Wittig, Michael; Anmarkrud, Jarl A; Kässens, Jan C; Koch, Simon; Forster, Michael; Ellinghaus, Eva; Hov, Johannes R; Sauer, Sascha; Schimmler, Manfred; Ziemann, Malte; Görg, Siegfried; Jacob, Frank; Karlsen, Tom H; Franke, Andre

    2015-06-23

    The human leukocyte antigen (HLA) complex contains the most polymorphic genes in the human genome. The classical HLA class I and II genes define the specificity of adaptive immune responses. Genetic variation at the HLA genes is associated with susceptibility to autoimmune and infectious diseases and plays a major role in transplantation medicine and immunology. Currently, the HLA genes are characterized using Sanger- or next-generation sequencing (NGS) of a limited amplicon repertoire or labeled oligonucleotides for allele-specific sequences. High-quality NGS-based methods are in proprietary use and not publicly available. Here, we introduce the first highly automated open-kit/open-source HLA-typing method for NGS. The method employs in-solution targeted capturing of the classical class I (HLA-A, HLA-B, HLA-C) and class II HLA genes (HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DPA1, HLA-DPB1). The calling algorithm allows for highly confident allele-calling to three-field resolution (cDNA nucleotide variants). The method was validated on 357 commercially available DNA samples with known HLA alleles obtained by classical typing. Our results showed on average an accurate allele call rate of 0.99 in a fully automated manner, identifying also errors in the reference data. Finally, our method provides the flexibility to add further enrichment target regions.

  12. Parallel WGA and WTA for Comparative Genome and Transcriptome NGS Analysis Using Tiny Cell Numbers.

    Science.gov (United States)

    Korfhage, Christian; Fricke, Evelyn; Meier, Andreas

    2015-07-01

    Genomic DNA determines how and when the transcriptome is changed by a trigger or environmental change and how cellular metabolism is influenced. Comparative genome and transcriptome analysis of the same cell sample links a defined genome with all changes in the bases, structure, or numbers of the transcriptome. However, comparative genome and transcriptome analysis using next-generation sequencing (NGS) or real-time PCR is often limited by the small amount of sample available. In mammals, the amount of DNA and RNA in a single cell is ∼10 picograms, but deep analysis of the genome and transcriptome currently requires several hundred nanograms of nucleic acids for library preparation for NGS sequencing. Consequently, accurate whole-genome amplification (WGA) and whole-transcriptome amplification (WTA) is required for such quantitative analysis. This unit describes how the genome and the transcriptome of a tiny number of cells can be amplified in a highly parallel and comparable process. Protocols for quality control of amplified DNA and application of amplified DNA for NGS are included.

  13. Functional genomics of tomato: opportunities and challenges in post-genome NGS era.

    Science.gov (United States)

    Kumar, Rahul; Khurana, Ashima

    2014-12-01

    The Tomato Genome Sequencing Project represented a landmark venture in the history of sequencing projects where both Sanger's and next-generation sequencing (NGS) technologies were employed, and a highly accurate and one of the best assembled plant genomes along with a draft of the wild relative, Solanum pimpinellifolium, were released in 2012. However, the functional potential of the major portion of this newly generated resource is still undefined. The very first challenge before scientists working on tomato functional biology is to exploit this high-quality reference sequence for tapping of the wealth of genetic variants for improving agronomic traits in cultivated tomatoes. The sequence data generated recently by 150 Tomato Genome Consortium would further uncover the natural alleles present in different tomato genotypes. Therefore, we found it relevant to have a fresh outlook on tomato functional genomics in the context of application of NGS technologies in its post-genome sequencing phase. Herein, we provide an overview how NGS technologies vis-a-vis available reference sequence have assisted each other for their mutual improvement and how their combined use could further facilitate the development of other 'omics' tools, required to propel the Solanaceae research. Additionally, we highlight the challenges associated with the application of these cutting-edge technologies.

  14. tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species.

    Science.gov (United States)

    Russell, Joanne R; Hedley, Peter E; Cardle, Linda; Dancey, Siobhan; Morris, Jenny; Booth, Allan; Odee, David; Mwaura, Lucy; Omondi, William; Angaine, Peter; Machua, Joseph; Muchugi, Alice; Milne, Iain; Kindt, Roeland; Jamnadass, Ramni; Dawson, Ian K

    2014-01-01

    The development of genetic tools for non-model organisms has been hampered by cost, but advances in next-generation sequencing (NGS) have created new opportunities. In ecological research, this raises the prospect for developing molecular markers to simultaneously study important genetic processes such as gene flow in multiple non-model plant species within complex natural and anthropogenic landscapes. Here, we report the use of bar-coded multiplexed paired-end Illumina NGS for the de novo development of expressed sequence tag-derived simple sequence repeat (EST-SSR) markers at low cost for a range of 24 tree species. Each chosen tree species is important in complex tropical agroforestry systems where little is currently known about many genetic processes. An average of more than 5,000 EST-SSRs was identified for each of the 24 sequenced species, whereas prior to analysis 20 of the species had fewer than 100 nucleotide sequence citations. To make results available to potential users in a suitable format, we have developed an open-access, interactive online database, tropiTree (http://bioinf.hutton.ac.uk/tropiTree), which has a range of visualisation and search facilities, and which is a model for the efficient presentation and application of NGS data.

  15. BAL31-NGS approach for identification of telomeres de novo in large genomes.

    Science.gov (United States)

    Peška, Vratislav; Sitová, Zdeňka; Fajkus, Petr; Fajkus, Jiří

    2017-02-01

    This article describes a novel method to identify as yet undiscovered telomere sequences, which combines next generation sequencing (NGS) with BAL31 digestion of high molecular weight DNA. The method was applied to two groups of plants: i) dicots, genus Cestrum, and ii) monocots, Allium species (e.g. A. ursinum and A. cepa). Both groups consist of species with large genomes (tens of Gb) and a low number of chromosomes (2n=14-16), full of repeat elements. Both genera lack typical telomeric repeats and multiple studies have attempted to characterize alternative telomeric sequences. However, despite interesting hypotheses and suggestions of alternative candidate telomeres (retrotransposons, rDNA, satellite repeats) these studies have not resolved the question. In a novel approach based on the two most general features of eukaryotic telomeres, their repetitive character and sensitivity to BAL31 nuclease digestion, we have taken advantage of the capacity and current affordability of NGS in combination with the robustness of classical BAL31 nuclease digestion of chromosomal termini. While representative samples of most repeat elements were ensured by low-coverage (less than 5%) genomic shot-gun NGS, candidate telomeres were identified as under-represented sequences in BAL31-treated samples.

  16. Vacuum Birefringence as a Vacuum Emission Process

    CERN Document Server

    Karbstein, Felix

    2015-01-01

    We argue that the phenomenon of vacuum birefringence in strong inhomogeneous electromagnetic fields can be most efficiently analyzed in terms of a vacuum emission process. In this contribution, we exemplarily stick to the case of vacuum birefringence in a stationary perpendicularly directed, purely magnetic background field extending over a finite spatial extent. Similar field configurations are realized in the BMV and PVLAS experiments. We demonstrate that we can reproduce the conventional constant field result. Our focus is on effects which arise when the probe photons originate in the field free region, are directed towards the magnetic field region, and detected well after the interaction with the magnetic field has taken place, again at zero field.

  17. Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities.

    Science.gov (United States)

    Tan, BoonFei; Ng, Charmaine; Nshimyimana, Jean Pierre; Loh, Lay Leng; Gin, Karina Y-H; Thompson, Janelle R

    2015-01-01

    Water quality is an emergent property of a complex system comprised of interacting microbial populations and introduced microbial and chemical contaminants. Studies leveraging next-generation sequencing (NGS) technologies are providing new insights into the ecology of microbially mediated processes that influence fresh water quality such as algal blooms, contaminant biodegradation, and pathogen dissemination. In addition, sequencing methods targeting small subunit (SSU) rRNA hypervariable regions have allowed identification of signature microbial species that serve as bioindicators for sewage contamination in these environments. Beyond amplicon sequencing, metagenomic and metatranscriptomic analyses of microbial communities in fresh water environments reveal the genetic capabilities and interplay of waterborne microorganisms, shedding light on the mechanisms for production and biodegradation of toxins and other contaminants. This review discusses the challenges and benefits of applying NGS-based methods to water quality research and assessment. We will consider the suitability and biases inherent in the application of NGS as a screening tool for assessment of biological risks and discuss the potential and limitations for direct quantitative interpretation of NGS data. Secondly, we will examine case studies from recent literature where NGS based methods have been applied to topics in water quality assessment, including development of bioindicators for sewage pollution and microbial source tracking, characterizing the distribution of toxin and antibiotic resistance genes in water samples, and investigating mechanisms of biodegradation of harmful pollutants that threaten water quality. Finally, we provide a short review of emerging NGS platforms and their potential applications to the next generation of water quality assessment tools.

  18. Cervical spine annulus vacuum.

    Science.gov (United States)

    Bohrer, S P; Chen, Y M

    1988-01-01

    Thirty-eight annulus vacuums in 27 patients were analyzed with regard to location, configuration, and associated vertebral abnormalities such as degenerative changes, absent and compressed anterosuperior vertebral body corners, and annulus calcification. It is concluded that most annulus vacuums are a degenerative phenomenon at the attachment of the annulus to bone. These vacuums may be associated with other degenerative changes such as osteophytes and annulus calcification. Vacuums have a strong association with compressed anterosuperior corners. These deformed corners are thought to be early osteophytes and may be related to previous trauma, a vertebra with an absent corner, and/or normal motion. Small annulus vacuums adjacent to vertebral corners with a normal appearance are more likely to result from acute trauma.

  19. ELETTRA vacuum system

    Science.gov (United States)

    Bernardini, M.

    1991-08-01

    A status report of the vacuum system of ELETTRA, the 2 GeV, 400 mA light source under construction in Trieste, will be described. The Vacuum project, presented at ``Synchrotron Radiation Vacuum Workshop'' at Riken (Japan 22-24 March 1990) and more recently at EVC-2, the European Vacuum Conference at Trieste (Italy 21-26 May 1990), is now in the phase of testing a prototype sector, which is 1/24 of the ring circumference. Details and some technological aspects of the fabrication will be reviewed together with the vacuum performances. Results of laboratory experiments on components, standard or not, allowed us to finalize the main choices in light of the general philosophy of the project and will be properly summarized.

  20. Cervical spine annulus vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Bohrer, S.P.; Chen, Y.M.

    1988-07-01

    Thirty-eight annulus vacuums in 27 patients were analyzed with regard to location, configuration, and associated vertebral abnormalities such as degenerative changes, absent and compressed anterosuperior vertebral body corners, and annulus calcification. It is concluded that most annulus vacuums are a degenerative phenomenon at the attachment of the annulus to bone. These vacuums may be associated with other degenerative changes such as osteophytes and annulus calcification. Vacuums have a strong association with compressed anterosuperior corners. These deformed corners are thought to be early osteophytes and may be related to previous trauma, a vertebra with an absent corner, and/or normal motion. Small annulus vacuums adjacent to vertebral corners with a normal appearance are more likely to result from acute trauma.

  1. Vacuum controls and interlocks

    CERN Document Server

    Strubin, P

    2007-01-01

    The vacuum control system is, in most cases, a subset of the general control system of an accelerator. As such, it shares the architecture and communication infrastructure of the main control system. Considered as a ‘slow process’ to control in the frame of accelerators, the vacuum control system can be built using commercial industrial controllers (PLCs). A data driven approach allows for changes in configuration without changing the software code but at the expense of a solid database. Modelling the equipment allows for easy adaptation of a variety of control units with the same functionality but different physical interfaces. It also allows for a uniform display of the available data and status values. Interlocks are required to protect the vacuum equipment itself against abnormal conditions, but also to protect other systems, like RF, which need a good vacuum to operate. They are an integral part of any vacuum control system.

  2. Microfabricated triggered vacuum switch

    Science.gov (United States)

    Roesler, Alexander W.; Schare, Joshua M.; Bunch, Kyle

    2010-05-11

    A microfabricated vacuum switch is disclosed which includes a substrate upon which an anode, cathode and trigger electrode are located. A cover is sealed over the substrate under vacuum to complete the vacuum switch. In some embodiments of the present invention, a metal cover can be used in place of the trigger electrode on the substrate. Materials used for the vacuum switch are compatible with high vacuum, relatively high temperature processing. These materials include molybdenum, niobium, copper, tungsten, aluminum and alloys thereof for the anode and cathode. Carbon in the form of graphitic carbon, a diamond-like material, or carbon nanotubes can be used in the trigger electrode. Channels can be optionally formed in the substrate to mitigate against surface breakdown.

  3. Thermophoretic vacuum wand

    Science.gov (United States)

    Klebanoff, Leonard Elliott; Rader, Daniel John

    2000-01-01

    A thermophoretic vacuum wand that is particularly suited for transporting articles in a cleanroom environment so that potential particle contaminants in the air do not become adhered to the surface of the article is described. The wand includes a housing having a platen with a front surface with suction port(s) through the platen; a vacuum source for applying a negative pressure to the suction port(s); and heating device for the object. Heating the article when it is held by the vacuum wand affords thermophoretic protection that effectively prevents particles in the air from depositing onto the article.

  4. Evading death by vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Barroso, A. [Universidade de Lisboa, Centro de Fisica Teorica e Computacional, Faculdade de Ciencias, Lisboa (Portugal); Ferreira, P.M.; Santos, Rui [Universidade de Lisboa, Centro de Fisica Teorica e Computacional, Faculdade de Ciencias, Lisboa (Portugal); Instituto Superior de Engenharia de Lisboa, Lisboa (Portugal); Ivanov, I.P. [Universite de Liege, IFPA, Liege (Belgium); Sobolev Institute of Mathematics, Novosibirsk (Russian Federation); Silva, Joao P. [Instituto Superior de Engenharia de Lisboa, Lisboa (Portugal); Universidade Tecnica de Lisboa, Centro de Fisica Teorica de Particulas (CFTP), Instituto Superior Tecnico, Lisboa (Portugal)

    2013-09-15

    In the Standard Model, the Higgs potential allows only one minimum at tree level. But the open possibility that there might be two scalar doublets enriches the vacuum structure, allowing for the risk that we might now be in a metastable state, which we dub the panic vacuum. Current experiments at the LHC are probing the Higgs particle predicted as a result of the spontaneous symmetry breaking. Remarkably, in the two Higgs model with a softly broken U(1) symmetry, the LHC experiments already allow to exclude many panic vacuum solutions. (orig.)

  5. Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money.

    Science.gov (United States)

    Vincent, Antony T; Derome, Nicolas; Boyle, Brian; Culley, Alexander I; Charette, Steve J

    2017-07-01

    The Sanger sequencing method produces relatively long DNA sequences of unmatched quality and has been considered for long time as the gold standard for sequencing DNA. Many improvements of the Sanger method that culminated with fluorescent dyes coupled with automated capillary electrophoresis enabled the sequencing of the first genomes. Nevertheless, using this technology to sequence whole genomes was costly, laborious and time consuming even for genomes that are relatively small in size. A major technological advance was the introduction of next-generation sequencing (NGS) pioneered by 454 Life Sciences in the early part of the 21th century. NGS allowed scientists to sequence thousands to millions of DNA molecules in a single machine run. Since then, new NGS technologies have emerged and existing NGS platforms have been improved, enabling the production of genome sequences at an unprecedented rate as well as broadening the spectrum of NGS applications. The current affordability of generating genomic information, especially with microbial samples, has resulted in a false sense of simplicity that belies the fact that many researchers still consider these technologies a black box. In this review, our objective is to identify and discuss four steps that we consider crucial to the success of any NGS-related project. These steps are: (1) the definition of the research objectives beyond sequencing and appropriate experimental planning, (2) library preparation, (3) sequencing and (4) data analysis. The goal of this review is to give an overview of the process, from sample to analysis, and discuss how to optimize your resources to achieve the most from your NGS-based research. Regardless of the evolution and improvement of the sequencing technologies, these four steps will remain relevant. Copyright © 2016 Elsevier B.V. All rights reserved.

  6. Critical review of NGS analyses for de novo genotyping multigene families.

    Science.gov (United States)

    Lighten, Jackie; van Oosterhout, Cock; Bentzen, Paul

    2014-08-01

    The genotyping of highly polymorphic multigene families across many individuals used to be a particularly challenging task because of methodological limitations associated with traditional approaches. Next-generation sequencing (NGS) can overcome most of these limitations, and it is increasingly being applied in population genetic studies of multigene families. Here, we critically review NGS bioinformatic approaches that have been used to genotype the major histocompatibility complex (MHC) immune genes, and we discuss how the significant advances made in this field are applicable to population genetic studies of gene families. Increasingly, approaches are introduced that apply thresholds of sequencing depth and sequence similarity to separate alleles from methodological artefacts. We explain why these approaches are particularly sensitive to methodological biases by violating fundamental genotyping assumptions. An alternative strategy that utilizes ultra-deep sequencing (hundreds to thousands of sequences per amplicon) to reconstruct genotypes and applies statistical methods on the sequencing depth to separate alleles from artefacts appears to be more robust. Importantly, the 'degree of change' (DOC) method avoids using arbitrary cut-off thresholds by looking for statistical boundaries between the sequencing depth for alleles and artefacts, and hence, it is entirely repeatable across studies. Although the advances made in generating NGS data are still far ahead of our ability to perform reliable processing, analysis and interpretation, the community is developing statistically rigorous protocols that will allow us to address novel questions in evolution, ecology and genetics of multigene families. Future developments in third-generation single molecule sequencing may potentially help overcome problems that still persist in de novo multigene amplicon genotyping when using current second-generation sequencing approaches.

  7. Sample Results From The Extraction, Scrub, And Strip Test For The Blended NGS Solvent

    Energy Technology Data Exchange (ETDEWEB)

    Washington, A. L. II; Peters, T. B.

    2014-03-03

    This report summarizes the results of the extraction, scrub, and strip testing for the September 2013 sampling of the Next Generation Solvent (NGS) Blended solvent from the Modular Caustic Side-Solvent Extraction Unit (MCU) Solvent Hold Tank. MCU is in the process of transitioning from the BOBCalixC6 solvent to the NGS Blend solvent. As part of that transition, MCU has intentionally created a blended solvent to be processed using the Salt Batch program. This sample represents the first sample received from that blended solvent. There were two ESS tests performed where NGS blended solvent performance was assessed using either the Tank 21 material utilized in the Salt Batch 7 analyses or a simulant waste material used in the V-5/V-10 contactor testing. This report tabulates the temperature corrected cesium distribution, or DCs values, step recovery percentage, and actual temperatures recorded during the experiment. This report also identifies the sample receipt date, preparation method, and analysis performed in the accumulation of the listed values. The calculated extraction DCs values using the Tank 21H material and simulant are 59.4 and 53.8, respectively. The DCs values for two scrub and three strip processes for the Tank 21 material are 4.58, 2.91, 0.00184, 0.0252, and 0.00575, respectively. The D-values for two scrub and three strip processes for the simulant are 3.47, 2.18, 0.00468, 0.00057, and 0.00572, respectively. These values are similar to previous measurements of Salt Batch 7 feed with lab-prepared blended solvent. These numbers are considered compatible to allow simulant testing to be completed in place of actual waste due to the limited availability of feed material.

  8. New genes and pathomechanisms in mitochondrial disorders unraveled by NGS technologies.

    Science.gov (United States)

    Legati, Andrea; Reyes, Aurelio; Nasca, Alessia; Invernizzi, Federica; Lamantea, Eleonora; Tiranti, Valeria; Garavaglia, Barbara; Lamperti, Costanza; Ardissone, Anna; Moroni, Isabella; Robinson, Alan; Ghezzi, Daniele; Zeviani, Massimo

    2016-08-01

    Next Generation Sequencing (NGS) technologies are revolutionizing the diagnostic screening for rare disease entities, including primary mitochondrial disorders, particularly those caused by nuclear gene defects. NGS approaches are able to identify the causative gene defects in small families and even single individuals, unsuitable for investigation by traditional linkage analysis. These technologies are contributing to fill the gap between mitochondrial disease cases defined on the basis of clinical, neuroimaging and biochemical readouts, which still outnumber by approximately 50% the cases for which a molecular-genetic diagnosis is attained. We have been using a combined, two-step strategy, based on targeted genes panel as a first NGS screening, followed by whole exome sequencing (WES) in still unsolved cases, to analyze a large cohort of subjects, that failed to show mutations in mtDNA and in ad hoc sets of specific nuclear genes, sequenced by the Sanger's method. Not only this approach has allowed us to reach molecular diagnosis in a significant fraction (20%) of these difficult cases, but it has also revealed unexpected and conceptually new findings. These include the possibility of marked variable penetrance of recessive mutations, the identification of large-scale DNA rearrangements, which explain spuriously heterozygous cases, and the association of mutations in known genes with unusual, previously unreported clinical phenotypes. Importantly, WES on selected cases has unraveled the presence of pathogenic mutations in genes encoding non-mitochondrial proteins (e.g. the transcription factor E4F1), an observation that further expands the intricate genetics of mitochondrial disease and suggests a new area of investigation in mitochondrial medicine. This article is part of a Special Issue entitled 'EBEC 2016: 19th European Bioenergetics Conference, Riva del Garda, Italy, July 2-6, 2016', edited by Prof. Paolo Bernardi.

  9. Vacuum mechatronics first international workshop

    Energy Technology Data Exchange (ETDEWEB)

    Belinski, S.E.; Shirazi, M.; Hackwood, S.; Beni, G. (eds.) (California Univ., Santa Barbara, CA (USA))

    1989-01-01

    This report contains papers on the following topics: proposed epitaxial thin film growth in the ultra-vacuum of space; particle monitoring and control in vacuum processing equipment; electrostatic dust collector for use in vacuum systems; materials evaluation of an electrically noisy vacuum slip ring assembly; an overview of lubrication and associated materials for vacuum service; the usage of lubricants in a vacuum environment; guidelines and practical applications for lubrication in vacuum; recent development in leak detector and calibrator designs; the durability of ballscrews for ultrahigh vacuum; vacuum-compatible robot for self-contained manufacturing systems; the design, fabrication, and assembly of an advanced vacuum robotics system for space payload calibration; design criteria for mechanisms used in space; and concepts and requirements for semiconductor multiprocess integration in vacuum. These papers are indexed separately elsewhere.

  10. Fast extraction from SPS LSS4 for the LHC and NGS projects

    CERN Document Server

    Goddard, B

    1998-01-01

    The proton and lead ion beams for the anti-clockwise ring of the LHC will be extracted from the SPS in LSS4 and transferred to LHC point 8 via the transfer line TT40-TI8. A conventional single turn 'fast' extraction will be used. The same extraction channel may be used to transfer protons to a neutrino target for the proposed long baseline Neutrino to Gran Sasso (NGS) project. The planned layout for the extraction channel in LSS4 now has the extraction septum in SPS half period 418, and is outlined for both fast-pulsed and DC septum designs.

  11. Precise GPS ephemerides from DMA and NGS tested by time transfer

    Science.gov (United States)

    Lewandowski, Wlodzimierz W.; Petit, Gerard; Thomas, Claudine

    1992-01-01

    It was shown that the use of the Defense Mapping Agency's (DMA) precise ephemerides brings a significant improvement to the accuracy of GPS time transfer. At present a new set of precise ephemerides produced by the National Geodetic Survey (NGS) has been made available to the timing community. This study demonstrates that both types of precise ephemerides improve long-distance GPS time transfer and remove the effects of Selective Availability (SA) degradation of broadcast ephemerides. The issue of overcoming SA is also discussed in terms of the routine availability of precise ephemerides.

  12. Cold Vacuum Drying Facility

    Data.gov (United States)

    Federal Laboratory Consortium — Located near the K-Basins (see K-Basins link) in Hanford's 100 Area is a facility called the Cold Vacuum Drying Facility (CVDF).Between 2000 and 2004, workers at the...

  13. Cosmology of gravitational vacuum

    CERN Document Server

    Burdyuzha, V; Pacheco, J

    2008-01-01

    Production of gravitational vacuum defects and their contribution to the energy density of our Universe are discussed. These topological microstructures (defects) could be produced in the result of creation of the Universe from "nothing" when a gravitational vacuum condensate has appeared. They must be isotropically distributed over the isotropic expanding Universe. After Universe inflation these microdefects are smoothed, stretched and broken up. A part of them could survive and now they are perceived as the structures of Lambda-term and an unclustered dark matter. It is shown that the parametrization noninvariance of the Wheeler-De Witt equation can be used to describe phenomenologically vacuum topological defects of different dimensions (worm-holes, micromembranes, microstrings and monopoles). The mathematical illustration of these processes may be the spontaneous breaking of the local Lorentz-invariance of the quasi-classical equations of gravity. Probably the gravitational vacuum condensate has fixed tim...

  14. Handbook of vacuum technology

    CERN Document Server

    2016-01-01

    This comprehensive, standard work has been updated to remain an important resource for all those needing detailed knowledge of the theory and applications of vacuum technology. With many numerical examples and illustrations to visualize the theoretical issues.

  15. Vacuum Camera Cooler

    Science.gov (United States)

    Laugen, Geoffrey A.

    2011-01-01

    Acquiring cheap, moving video was impossible in a vacuum environment, due to camera overheating. This overheating is brought on by the lack of cooling media in vacuum. A water-jacketed camera cooler enclosure machined and assembled from copper plate and tube has been developed. The camera cooler (see figure) is cup-shaped and cooled by circulating water or nitrogen gas through copper tubing. The camera, a store-bought "spy type," is not designed to work in a vacuum. With some modifications the unit can be thermally connected when mounted in the cup portion of the camera cooler. The thermal conductivity is provided by copper tape between parts of the camera and the cooled enclosure. During initial testing of the demonstration unit, the camera cooler kept the CPU (central processing unit) of this video camera at operating temperature. This development allowed video recording of an in-progress test, within a vacuum environment.

  16. ISR Intersection Vacuum Chamber

    CERN Multimedia

    1975-01-01

    This special vacuum chamber presenting a lateral opening at the beam crossing point is one of the many chambers specifically designed for a particular experiment. Here it is shown during assembly at the ISR mechanical worshop.

  17. A Planck Vacuum Cosmology

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2009-04-01

    Full Text Available Both the big-bang and the quasi-steady-state cosmologies originate in some type of Planck state. This paper presents a new cosmological theory based on the Planck- vacuum negative-energy state, a state consisting of a degenerate collection of negative- energy Planck particles. A heuristic look at the Einstein field equation provides a con- vincing argument that such a vacuum state could provide a theoretical explanation for the visible universe.

  18. Power vacuum tubes handbook

    CERN Document Server

    Whitaker, Jerry

    2012-01-01

    Providing examples of applications, Power Vacuum Tubes Handbook, Third Edition examines the underlying technology of each type of power vacuum tube device in common use today. The author presents basic principles, reports on new development efforts, and discusses implementation and maintenance considerations. Supporting mathematical equations and extensive technical illustrations and schematic diagrams help readers understand the material. Translate Principles into Specific Applications This one-stop reference is a hands-on guide for engineering personnel involved in the design, specification,

  19. A high-throughput optomechanical retrieval method for sequence-verified clonal DNA from the NGS platform.

    Science.gov (United States)

    Lee, Howon; Kim, Hyoki; Kim, Sungsik; Ryu, Taehoon; Kim, Hwangbeom; Bang, Duhee; Kwon, Sunghoon

    2015-02-02

    Writing DNA plays a significant role in the fields of synthetic biology, functional genomics and bioengineering. DNA clones on next-generation sequencing (NGS) platforms have the potential to be a rich and cost-effective source of sequence-verified DNAs as a precursor for DNA writing. However, it is still very challenging to retrieve target clonal DNA from high-density NGS platforms. Here we propose an enabling technology called 'Sniper Cloning' that enables the precise mapping of target clone features on NGS platforms and non-contact rapid retrieval of targets for the full utilization of DNA clones. By merging the three cutting-edge technologies of NGS, DNA microarray and our pulse laser retrieval system, Sniper Cloning is a week-long process that produces 5,188 error-free synthetic DNAs in a single run of NGS with a single microarray DNA pool. We believe that this technology has potential as a universal tool for DNA writing in biological sciences.

  20. Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses.

    Science.gov (United States)

    Golosova, Olga; Henderson, Ross; Vaskin, Yuriy; Gabrielian, Andrei; Grekhov, German; Nagarajan, Vijayaraj; Oler, Andrew J; Quiñones, Mariam; Hurt, Darrell; Fursov, Mikhail; Huyen, Yentram

    2014-01-01

    The advent of Next Generation Sequencing (NGS) technologies has opened new possibilities for researchers. However, the more biology becomes a data-intensive field, the more biologists have to learn how to process and analyze NGS data with complex computational tools. Even with the availability of common pipeline specifications, it is often a time-consuming and cumbersome task for a bench scientist to install and configure the pipeline tools. We believe that a unified, desktop and biologist-friendly front end to NGS data analysis tools will substantially improve productivity in this field. Here we present NGS pipelines "Variant Calling with SAMtools", "Tuxedo Pipeline for RNA-seq Data Analysis" and "Cistrome Pipeline for ChIP-seq Data Analysis" integrated into the Unipro UGENE desktop toolkit. We describe the available UGENE infrastructure that helps researchers run these pipelines on different datasets, store and investigate the results and re-run the pipelines with the same parameters. These pipeline tools are included in the UGENE NGS package. Individual blocks of these pipelines are also available for expert users to create their own advanced workflows.

  1. lociNGS: a lightweight alternative for assessing suitability of next-generation loci for evolutionary analysis.

    Directory of Open Access Journals (Sweden)

    Sarah M Hird

    Full Text Available Genomic enrichment methods and next-generation sequencing produce uneven coverage for the portions of the genome (the loci they target; this information is essential for ascertaining the suitability of each locus for further analysis. lociNGS is a user-friendly accessory program that takes multi-FASTA formatted loci, next-generation sequence alignments and demographic data as input and collates, displays and outputs information about the data. Summary information includes the parameters coverage per locus, coverage per individual and number of polymorphic sites, among others. The program can output the raw sequences used to call loci from next-generation sequencing data. lociNGS also reformats subsets of loci in three commonly used formats for multi-locus phylogeographic and population genetics analyses - NEXUS, IMa2 and Migrate. lociNGS is available at https://github.com/SHird/lociNGS and is dependent on installation of MongoDB (freely available at http://www.mongodb.org/downloads. lociNGS is written in Python and is supported on MacOSX and Unix; it is distributed under a GNU General Public License.

  2. Analysis and Visualization of ChIP-Seq and RNA-Seq Sequence Alignments Using ngs.plot.

    Science.gov (United States)

    Loh, Yong-Hwee Eddie; Shen, Li

    2016-01-01

    The continual maturation and increasing applications of next-generation sequencing technology in scientific research have yielded ever-increasing amounts of data that need to be effectively and efficiently analyzed and innovatively mined for new biological insights. We have developed ngs.plot-a quick and easy-to-use bioinformatics tool that performs visualizations of the spatial relationships between sequencing alignment enrichment and specific genomic features or regions. More importantly, ngs.plot is customizable beyond the use of standard genomic feature databases to allow the analysis and visualization of user-specified regions of interest generated by the user's own hypotheses. In this protocol, we demonstrate and explain the use of ngs.plot using command line executions, as well as a web-based workflow on the Galaxy framework. We replicate the underlying commands used in the analysis of a true biological dataset that we had reported and published earlier and demonstrate how ngs.plot can easily generate publication-ready figures. With ngs.plot, users would be able to efficiently and innovatively mine their own datasets without having to be involved in the technical aspects of sequence coverage calculations and genomic databases.

  3. NGS-Based Assay for the Identification of Individuals Carrying Recessive Genetic Mutations in Reproductive Medicine.

    Science.gov (United States)

    Abulí, Anna; Boada, Montserrat; Rodríguez-Santiago, Benjamín; Coroleu, Buenaventura; Veiga, Anna; Armengol, Lluís; Barri, Pedro N; Pérez-Jurado, Luis A; Estivill, Xavier

    2016-06-01

    Next-generation sequencing (NGS) has the capacity of carrier screening in gamete donation (GD) programs. We have developed and validated an NGS carrier-screening test (qCarrier test) that includes 200 genes associated with 368 disorders (277 autosomal recessive and 37 X-linked). Carrier screening is performed on oocyte donation candidates and the male partner of oocyte recipient. Carriers of X-linked conditions are excluded from the GD program, whereas donors are chosen who do not carry mutations for the same gene/disease as the recipients. The validation phase showed a high sensitivity (>99% sensitivity) detecting all single-nucleotide variants, 13 indels, and 25 copy-number variants included in the validation set. A total of 1,301 individuals were analysed with the qCarrier test, including 483 candidate oocyte donors and 635 receptor couples, 105 females receiving sperm donation, and 39 couples seeking pregnancy. We identified 56% of individuals who are carriers for at least one genetic condition and 1.7% of female donors who were excluded from the program due to a carrier state of X-linked conditions. Globally, 3% of a priori assigned donations had a high reproductive risk that could be minimized after testing. Genetic counselling at different stages is essential for helping to facilitate a successful and healthy pregnancy.

  4. Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions.

    Science.gov (United States)

    Bianchi, Valerio; Ceol, Arnaud; Ogier, Alessandro G E; de Pretis, Stefano; Galeota, Eugenia; Kishore, Kamal; Bora, Pranami; Croci, Ottavio; Campaner, Stefano; Amati, Bruno; Morelli, Marco J; Pelizzola, Mattia

    2016-01-01

    Next-generation sequencing (NGS) technologies have deeply changed our understanding of cellular processes by delivering an astonishing amount of data at affordable prices; nowadays, many biology laboratories have already accumulated a large number of sequenced samples. However, managing and analyzing these data poses new challenges, which may easily be underestimated by research groups devoid of IT and quantitative skills. In this perspective, we identify five issues that should be carefully addressed by research groups approaching NGS technologies. In particular, the five key issues to be considered concern: (1) adopting a laboratory management system (LIMS) and safeguard the resulting raw data structure in downstream analyses; (2) monitoring the flow of the data and standardizing input and output directories and file names, even when multiple analysis protocols are used on the same data; (3) ensuring complete traceability of the analysis performed; (4) enabling non-experienced users to run analyses through a graphical user interface (GUI) acting as a front-end for the pipelines; (5) relying on standard metadata to annotate the datasets, and when possible using controlled vocabularies, ideally derived from biomedical ontologies. Finally, we discuss the currently available tools in the light of these issues, and we introduce HTS-flow, a new workflow management system conceived to address the concerns we raised. HTS-flow is able to retrieve information from a LIMS database, manages data analyses through a simple GUI, outputs data in standard locations and allows the complete traceability of datasets, accompanying metadata and analysis scripts.

  5. Integrated systems for NGS data management and analysis: open issues and available solutions

    Directory of Open Access Journals (Sweden)

    Valerio eBianchi

    2016-05-01

    Full Text Available Next-generation sequencing (NGS technologies have deeply changed our understanding of cellular processes by delivering an astonishing amount of data at affordable prices; nowadays, many biology laboratories have already accumulated a large number of sequenced samples. However, managing and analyzing these data poses new challenges, which may easily be underestimated by research groups devoid of IT and quantitative skills. In this perspective, we identify five issues that should be carefully addressed by research groups approaching NGS technologies. In particular, the five key issues to be considered concern: 1 adopting a laboratory management system (LIMS and safeguard the resulting raw data structure in downstream analyses; 2 monitoring the flow of the data and standardizing input and output directories and file names, even when multiple analysis protocols are used on the same data; 3 ensuring complete traceability of the analysis performed; 4 enabling non-experienced users to run analyses through a graphical user interface (GUI acting as a front-end for the pipelines; 5 relying on standard metadata to annotate the datasets, and when possible using controlled vocabularies, ideally derived from biomedical ontologies. Finally, we discuss the currently available tools in the light of these issues, and we introduce HTS-flow, a new workflow management system (WMS conceived to address the concerns we raised. HTS-flow is able to retrieve information from a LIMS database, manages data analyses through a simple GUI, outputs data in standard locations and allows the complete traceability of datasets, accompanying metadata and analysis scripts.

  6. CDH1 mutations in gastric cancer patients from northern Brazil identified by Next- Generation Sequencing (NGS).

    Science.gov (United States)

    El-Husny, Antonette; Raiol-Moraes, Milene; Amador, Marcos; Ribeiro-Dos-Santos, André M; Montagnini, André; Barbosa, Silvanira; Silva, Artur; Assumpção, Paulo; Ishak, Geraldo; Santos, Sidney; Pinto, Pablo; Cruz, Aline; Ribeiro-Dos-Santos, Ândrea

    2016-05-13

    Gastric cancer is considered to be the fifth highest incident tumor worldwide and the third leading cause of cancer deaths. Developing regions report a higher number of sporadic cases, but there are only a few local studies related to hereditary cases of gastric cancer in Brazil to confirm this fact. CDH1 germline mutations have been described both in familial and sporadic cases, but there is only one recent molecular description of individuals from Brazil. In this study we performed Next Generation Sequencing (NGS) to assess CDH1 germline mutations in individuals who match the clinical criteria for Hereditary Diffuse Gastric Cancer (HDGC), or who exhibit very early diagnosis of gastric cancer. Among five probands we detected CDH1 germline mutations in two cases (40%). The mutation c.1023T > G was found in a HDGC family and the mutation c.1849G > A, which is nearly exclusive to African populations, was found in an early-onset case of gastric adenocarcinoma. The mutations described highlight the existence of gastric cancer cases caused by CDH1 germline mutations in northern Brazil, although such information is frequently ignored due to the existence of a large number of environmental factors locally. Our report represent the first CDH1 mutations in HDGC described from Brazil by an NGS platform.

  7. Assessment of the latest NGS enrichment capture methods in clinical context.

    Science.gov (United States)

    García-García, Gema; Baux, David; Faugère, Valérie; Moclyn, Mélody; Koenig, Michel; Claustres, Mireille; Roux, Anne-Françoise

    2016-02-11

    Enrichment capture methods for NGS are widely used, however, they evolve rapidly and it is necessary to periodically measure their strengths and weaknesses before transfer to diagnostic services. We assessed two recently released custom DNA solution-capture enrichment methods for NGS, namely Illumina NRCCE and Agilent SureSelect(QXT), against a reference method NimbleGen SeqCap EZ Choice on a similar gene panel, sharing 678 kb and 110 genes. Two Illumina MiSeq runs of 12 samples each have been performed, for each of the three methods, using the same 24 patients (affected with sensorineural disorders). Technical outcomes have been computed and compared, including depth and evenness of coverage, enrichment in targeted regions, performance in GC-rich regions and ability to generate consistent variant datasets. While we show that the three methods resulted in suitable datasets for standard DNA variant discovery, we describe significant differences between the results for the above parameters. NimbleGen offered the best depth of coverage and evenness, while NRCCE showed the highest on target levels but high duplicate rates. SureSelect(QXT) showed an overall quality close to that of NimbleGen. The new methods exhibit reduced preparation time but behave differently. These findings will guide laboratories in their choice of library enrichment approach.

  8. Panel-based NGS Reveals Novel Pathogenic Mutations in Autosomal Recessive Retinitis Pigmentosa.

    Science.gov (United States)

    Perez-Carro, Raquel; Corton, Marta; Sánchez-Navarro, Iker; Zurita, Olga; Sanchez-Bolivar, Noelia; Sánchez-Alcudia, Rocío; Lelieveld, Stefan H; Aller, Elena; Lopez-Martinez, Miguel Angel; López-Molina, Ma Isabel; Fernandez-San Jose, Patricia; Blanco-Kelly, Fiona; Riveiro-Alvarez, Rosa; Gilissen, Christian; Millan, Jose M; Avila-Fernandez, Almudena; Ayuso, Carmen

    2016-01-25

    Retinitis pigmentosa (RP) is a group of inherited progressive retinal dystrophies (RD) characterized by photoreceptor degeneration. RP is highly heterogeneous both clinically and genetically, which complicates the identification of causative genes and mutations. Targeted next-generation sequencing (NGS) has been demonstrated to be an effective strategy for the detection of mutations in RP. In our study, an in-house gene panel comprising 75 known RP genes was used to analyze a cohort of 47 unrelated Spanish families pre-classified as autosomal recessive or isolated RP. Disease-causing mutations were found in 27 out of 47 cases achieving a mutation detection rate of 57.4%. In total, 33 pathogenic mutations were identified, 20 of which were novel mutations (60.6%). Furthermore, not only single nucleotide variations but also copy-number variations, including three large deletions in the USH2A and EYS genes, were identified. Finally seven out of 27 families, displaying mutations in the ABCA4, RP1, RP2 and USH2A genes, could be genetically or clinically reclassified. These results demonstrate the potential of our panel-based NGS strategy in RP diagnosis.

  9. NGS-based Molecular diagnosis of 105 eyeGENE(®) probands with Retinitis Pigmentosa.

    Science.gov (United States)

    Ge, Zhongqi; Bowles, Kristen; Goetz, Kerry; Scholl, Hendrik P N; Wang, Feng; Wang, Xinjing; Xu, Shan; Wang, Keqing; Wang, Hui; Chen, Rui

    2015-12-15

    The National Ophthalmic Disease Genotyping and Phenotyping Network (eyeGENE(®)) was established in an effort to facilitate basic and clinical research of human inherited eye disease. In order to provide high quality genetic testing to eyeGENE(®)'s enrolled patients which potentially aids clinical diagnosis and disease treatment, we carried out a pilot study and performed Next-generation sequencing (NGS) based molecular diagnosis for 105 Retinitis Pigmentosa (RP) patients randomly selected from the network. A custom capture panel was designed, which incorporated 195 known retinal disease genes, including 61 known RP genes. As a result, disease-causing mutations were identified in 52 out of 105 probands (solving rate of 49.5%). A total of 82 mutations were identified, and 48 of them were novel. Interestingly, for three probands the molecular diagnosis was inconsistent with the initial clinical diagnosis, while for five probands the molecular information suggested a different inheritance model other than that assigned by the physician. In conclusion, our study demonstrated that NGS target sequencing is efficient and sufficiently precise for molecular diagnosis of a highly heterogeneous patient cohort from eyeGENE(®).

  10. Calibrating System for Vacuum Gauges

    Institute of Scientific and Technical Information of China (English)

    MengJun; YangXiaotian; HaoBinggan; HouShengjun; HuZhenjun

    2003-01-01

    In order to measure the vacuum degree, a lot of vacuum gauges will be used in CSR vacuum system. We bought several types of vacuum gauges. We know that different typos of vacuum gauges or even one type of vacuum gauges have different measure results in same condition, so they must be calibrated. But it seems impossible for us to send so many gauges to the calibrating station outside because of the high price. So the best choice is to build a second class calibrating station for vacuum gauges by ourselves (Fig.l).

  11. LER Vacuum Studies

    Energy Technology Data Exchange (ETDEWEB)

    Matter, Regina S.

    2000-06-27

    During the Summer of 1999 the vacuum in LER was studied in order to answer a few questions: (1) how fast is the vacuum system cleaning; (2) when will the required operating pressure 10 nTorr be reached; (3) how fast do the TSP's saturate; and (4) what is the present average pressure in LER and what is the corresponding beam lifetime? Once {Delta}P/I, the coefficient relating the pressure to beam current and the base pressure is calculated, it is easy to find the time constants associated with the cleaning of the vacuum system and the saturation of the TSP's. In addition, these calculations showed that vertical steering of the LER orbit affects the vacuum and that leaks cause the TSP's to saturate. It is difficult to calculate the average pressure in the ring because most of the ion pumps in the straight sections do not read pressure accurately. Secondly, how do you calculate the conductance between the chamber and the anti-chamber? Thirdly, the gas load is unevenly distributed along the ring because of photon stops and leaks. However, the average vacuum pressure seen by the beam in the arcs is roughly three times higher than the pressure measured at the ion pumps, according to Artem Kulikov. Instead of calculating the average pressure in the ring, the author has calculated the coefficient relating the inverse beam lifetime to the beam current to see the long term improvement of the LER beam lifetime as the vacuum system is scrubbed. These calculations showed that the lifetime, including the low intensity lifetime, is limited by the vacuum pressure. The results reported here are obtained from numerical calculations.

  12. Next generation sequencing (NGS database for tandem repeats with multiple pattern 2°-shaft multicore string matching

    Directory of Open Access Journals (Sweden)

    Chinta Someswara Rao

    2016-03-01

    Full Text Available Next generation sequencing (NGS technologies have been rapidly applied in biomedical and biological research in recent years. To provide the comprehensive NGS resource for the research, in this paper , we have considered 10 loci/codi/repeats TAGA, TCAT, GAAT, AGAT, AGAA, GATA, TATC, CTTT, TCTG and TCTA. Then we developed the NGS Tandem Repeat Database (TandemRepeatDB for all the chromosomes of Homo sapiens, Callithrix jacchus, Chlorocebus sabaeus, Gorilla gorilla, Macaca fascicularis, Macaca mulatta, Nomascus leucogenys, Pan troglodytes, Papio anubis and Pongo abelii genome data sets for all those locis. We find the successive occurence frequency for all the above 10 SSR (simple sequence repeats in the above genome data sets on a chromosome-by-chromosome basis with multiple pattern 2° shaft multicore string matching.

  13. Next generation sequencing (NGS) database for tandem repeats with multiple pattern 2°-shaft multicore string matching

    Science.gov (United States)

    Someswara Rao, Chinta; Raju, S. Viswanadha

    2016-01-01

    Next generation sequencing (NGS) technologies have been rapidly applied in biomedical and biological research in recent years. To provide the comprehensive NGS resource for the research, in this paper , we have considered 10 loci/codi/repeats TAGA, TCAT, GAAT, AGAT, AGAA, GATA, TATC, CTTT, TCTG and TCTA. Then we developed the NGS Tandem Repeat Database (TandemRepeatDB) for all the chromosomes of Homo sapiens, Callithrix jacchus, Chlorocebus sabaeus, Gorilla gorilla, Macaca fascicularis, Macaca mulatta, Nomascus leucogenys, Pan troglodytes, Papio anubis and Pongo abelii genome data sets for all those locis. We find the successive occurence frequency for all the above 10 SSR (simple sequence repeats) in the above genome data sets on a chromosome-by-chromosome basis with multiple pattern 2° shaft multicore string matching. PMID:26981434

  14. A case study for cloud based high throughput analysis of NGS data using the globus genomics system.

    Science.gov (United States)

    Bhuvaneshwar, Krithika; Sulakhe, Dinanath; Gauba, Robinder; Rodriguez, Alex; Madduri, Ravi; Dave, Utpal; Lacinski, Lukasz; Foster, Ian; Gusev, Yuriy; Madhavan, Subha

    2015-01-01

    Next generation sequencing (NGS) technologies produce massive amounts of data requiring a powerful computational infrastructure, high quality bioinformatics software, and skilled personnel to operate the tools. We present a case study of a practical solution to this data management and analysis challenge that simplifies terabyte scale data handling and provides advanced tools for NGS data analysis. These capabilities are implemented using the "Globus Genomics" system, which is an enhanced Galaxy workflow system made available as a service that offers users the capability to process and transfer data easily, reliably and quickly to address end-to-endNGS analysis requirements. The Globus Genomics system is built on Amazon 's cloud computing infrastructure. The system takes advantage of elastic scaling of compute resources to run multiple workflows in parallel and it also helps meet the scale-out analysis needs of modern translational genomics research.

  15. Next generation sequencing (NGS) database for tandem repeats with multiple pattern 2°-shaft multicore string matching.

    Science.gov (United States)

    Someswara Rao, Chinta; Raju, S Viswanadha

    2016-03-01

    Next generation sequencing (NGS) technologies have been rapidly applied in biomedical and biological research in recent years. To provide the comprehensive NGS resource for the research, in this paper , we have considered 10 loci/codi/repeats TAGA, TCAT, GAAT, AGAT, AGAA, GATA, TATC, CTTT, TCTG and TCTA. Then we developed the NGS Tandem Repeat Database (TandemRepeatDB) for all the chromosomes of Homo sapiens, Callithrix jacchus, Chlorocebus sabaeus, Gorilla gorilla, Macaca fascicularis, Macaca mulatta, Nomascus leucogenys, Pan troglodytes, Papio anubis and Pongo abelii genome data sets for all those locis. We find the successive occurence frequency for all the above 10 SSR (simple sequence repeats) in the above genome data sets on a chromosome-by-chromosome basis with multiple pattern 2° shaft multicore string matching.

  16. A case study for cloud based high throughput analysis of NGS data using the globus genomics system

    Directory of Open Access Journals (Sweden)

    Krithika Bhuvaneshwar

    2015-01-01

    Full Text Available Next generation sequencing (NGS technologies produce massive amounts of data requiring a powerful computational infrastructure, high quality bioinformatics software, and skilled personnel to operate the tools. We present a case study of a practical solution to this data management and analysis challenge that simplifies terabyte scale data handling and provides advanced tools for NGS data analysis. These capabilities are implemented using the “Globus Genomics” system, which is an enhanced Galaxy workflow system made available as a service that offers users the capability to process and transfer data easily, reliably and quickly to address end-to-endNGS analysis requirements. The Globus Genomics system is built on Amazon's cloud computing infrastructure. The system takes advantage of elastic scaling of compute resources to run multiple workflows in parallel and it also helps meet the scale-out analysis needs of modern translational genomics research.

  17. Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

    Science.gov (United States)

    Tan, BoonFei; Ng, Charmaine; Nshimyimana, Jean Pierre; Loh, Lay Leng; Gin, Karina Y.-H.; Thompson, Janelle R.

    2015-01-01

    Water quality is an emergent property of a complex system comprised of interacting microbial populations and introduced microbial and chemical contaminants. Studies leveraging next-generation sequencing (NGS) technologies are providing new insights into the ecology of microbially mediated processes that influence fresh water quality such as algal blooms, contaminant biodegradation, and pathogen dissemination. In addition, sequencing methods targeting small subunit (SSU) rRNA hypervariable regions have allowed identification of signature microbial species that serve as bioindicators for sewage contamination in these environments. Beyond amplicon sequencing, metagenomic and metatranscriptomic analyses of microbial communities in fresh water environments reveal the genetic capabilities and interplay of waterborne microorganisms, shedding light on the mechanisms for production and biodegradation of toxins and other contaminants. This review discusses the challenges and benefits of applying NGS-based methods to water quality research and assessment. We will consider the suitability and biases inherent in the application of NGS as a screening tool for assessment of biological risks and discuss the potential and limitations for direct quantitative interpretation of NGS data. Secondly, we will examine case studies from recent literature where NGS based methods have been applied to topics in water quality assessment, including development of bioindicators for sewage pollution and microbial source tracking, characterizing the distribution of toxin and antibiotic resistance genes in water samples, and investigating mechanisms of biodegradation of harmful pollutants that threaten water quality. Finally, we provide a short review of emerging NGS platforms and their potential applications to the next generation of water quality assessment tools. PMID:26441948

  18. Next-generation sequencing (NGS for assessment of microbial water quality: current progress, challenges, and future opportunities

    Directory of Open Access Journals (Sweden)

    BoonFei eTan

    2015-09-01

    Full Text Available Water quality is an emergent property of a complex system comprised of interacting microbial populations and introduced microbial and chemical contaminants. Studies leveraging next-generation sequencing (NGS technologies are providing new insights into the ecology of microbially mediated processes that influence fresh water quality such as algal blooms, contaminant biodegradation, and pathogen dissemination. In addition, sequencing methods targeting small subunit (SSU rRNA hypervariable regions have allowed identification of signature microbial species that serve as bioindicators for sewage contamination in these environments. Beyond amplicon sequencing, metagenomic and metatranscriptomic analyses of microbial communities in fresh water environments reveal the genetic capabilities and interplay of waterborne microorganisms, shedding light on the mechanisms for production and biodegradation of toxins and other contaminants. This review discusses the challenges and benefits of applying NGS-based methods to water quality research and assessment. We will consider the suitability and biases inherent in the application of NGS as a screening tool for assessment of biological risks and discuss the potential and limitations for direct quantitative interpretation of NGS data. Secondly, we will examine case studies from recent literature where NGS based methods have been applied to topics in water quality assessment, including development of bioindicators for sewage pollution and microbial source tracking, characterizing the distribution of toxin and antibiotic resistance genes in water samples, and investigating mechanisms of biodegradation of harmful pollutants that threaten water quality. Finally, we provide a short review of emerging NGS platforms and their potential applications to the next generation of water quality assessment tools.

  19. Acetylene Vacuum Carburizing

    Institute of Scientific and Technical Information of China (English)

    Hitoshi Iwata

    2004-01-01

    Almost 30 years has passed since the publication of materials on vacuum carburizing technology, and is attracting a great deal of attention as a technology capable of being used as a substitute for gas carburizing technology.However, the technology was not popular except in specific fields. The main reason for this is due to a variety of harmful influences accompanying the sooting problems caused by CH4 or C3H8. We have succeeded in that the occurrence of sooting was suppressed by utilizing acetylene, at extremely low pressure for carburizing (below 1 kPa). This process is now showing the excellent quality and prospects for this technology in terms of quality, economy and safety. At present almost 70 practical mass production furnaces are used in production lines, in Japan and abroad. At this time, we will report summary of the present acetylene vacuum carbufizing process and the actual results obtained by these acetylene vacuum carbufizing furnaces for mass production.

  20. Handbook of vacuum physics

    CERN Document Server

    1964-01-01

    Handbook of Vacuum Physics, Volume 3: Technology is a handbook of vacuum physics, with emphasis on the properties of miscellaneous materials such as mica, oils, greases, waxes, and rubber. Accurate modern tables of physical constants, properties of materials, laboratory techniques, and properties of commercial pumps, gauges, and leak detectors are presented. This volume is comprised of 12 chapters and begins with a discussion on pump oils, divided into rotary pump oils and vapor pump oils. The next chapter deals with the properties and applications of greases, including outgassing and vapor pr

  1. Baryogenesis in false vacuum

    CERN Document Server

    Hamada, Yuta

    2016-01-01

    The null result in the LHC may indicate that the standard model is not drastically modified up to very high scale such as the GUT/string scale. Having this in the mind, we suggest a novel leptogenesis scenario realized in the false vacuum of the Higgs field. If the Higgs field develops the large vacuum expectation value in the early universe, the lepton number violating process is enhanced, which we use for baryogenesis. To demonstrate the scenario, several models are discussed. For example, we show that the observed baryon asymmetry is successfully generated in the standard model with a second Higgs doublet and a singlet scalar.

  2. New Vacuum Solar Telescope

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    With its pure aperture up to 985mm, the New Vacuum Solar Telescope of China (NVST) has become the world's biggest vacuum solar telescope. The main science task of NVST is the high-resolution observation of photosphere and chromosphere including their fine structure of magnetic field on the sun. The NVST was equipped with many new technologies and powerful instruments, such as an adaptive optical system, a polarization analyzer, two vertical spectrographs, a high-resolution image system and a very narrow Ha filter (0.125A).

  3. A rotating quantum vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Lorenci, V.A. de; Svaiter, N.F. [Centro Brasileiro de Pesquisas Fisicas (CBPF), Rio de Janeiro, RJ (Brazil)

    1996-11-01

    It was investigated which mapping has to be used to compare measurements made in a rotating frame to those made in an inertial frame. Using a non-Galilean coordinate transformation, the creation-annihilation operators of a massive scalar field in the rotating frame are not the same as those of an inertial observer. This leads to a new vacuum state(a rotating vacuum) which is a superposition of positive and negative frequency Minkowski particles. Polarization effects in circular accelerators in the proper frame of the electron making a connection with the inertial frame point of view were analysed. 65 refs.

  4. Superoleophobicity under vacuum

    Science.gov (United States)

    Liu, Xinjie; Wang, Xiaolong; Liang, Yongmin; Bell, Steven E. J.; Liu, Weimin; Zhou, Feng

    2011-05-01

    By using superoleophobic alumina and low vapor pressure oils we have been able to study wetting behavior at high vacuum. Here, we show that a superoleophobic state can exist for some probe liquids, even under high vacuum. However, with other liquids the surfaces are only superoloephobic because air is trapped beneath the droplet and the contact angle decreases dramatically (150°-120°) if this air is removed. These observations open up the possibility of designing materials which fully exploit the potential of physically trapped air to achieve extreme oleophobicity and/or hydrophobicity.

  5. IgH-V(D)J NGS-MRD measurement pre- and early post-allotransplant defines very low- and very high-risk ALL patients.

    Science.gov (United States)

    Pulsipher, Michael A; Carlson, Chris; Langholz, Bryan; Wall, Donna A; Schultz, Kirk R; Bunin, Nancy; Kirsch, Ilan; Gastier-Foster, Julie M; Borowitz, Michael; Desmarais, Cindy; Williamson, David; Kalos, Michael; Grupp, Stephan A

    2015-05-28

    Positive detection of minimal residual disease (MRD) by multichannel flow cytometry (MFC) prior to hematopoietic cell transplantation (HCT) of patients with acute lymphoblastic leukemia (ALL) identifies patients at high risk for relapse, but many pre-HCT MFC-MRD negative patients also relapse, and the predictive power MFC-MRD early post-HCT is poor. To test whether the increased sensitivity of next-generation sequencing (NGS)-MRD better identifies pre- and post-HCT relapse risk, we performed immunoglobulin heavy chain (IgH) variable, diversity, and joining (V[D]J) DNA sequences J NGS-MRD on 56 patients with B-cell ALL enrolled in Children's Oncology Group trial ASCT0431. NGS-MRD predicted relapse and survival more accurately than MFC-MRD (P NGS-MRD detection was better at predicting relapse than MFC-MRD (P NGS-MRD positive relapse rate, 67%; P = .004). Any post-HCT NGS positivity resulted in an increase in relapse risk by multivariate analysis (hazard ratio, 7.7; P = .05). Absence of detectable IgH-V(D)J NGS-MRD pre-HCT defines good-risk patients potentially eligible for less intense treatment approaches. Post-HCT NGS-MRD is highly predictive of relapse and survival, suggesting a role for this technique in defining patients early who would be eligible for post-HCT interventions. The trial was registered at www.clinicaltrials.gov as #NCT00382109.

  6. Technology handbook of vacuum physics

    CERN Document Server

    Beck, A H

    2013-01-01

    Handbook of Vacuum Physics, Volume 3: Technology is part of a series of publications that presents articles featuring the whole spectrum of vacuum physics. This particular volume presents materials that deal with technology concerns in vacuum mechanics. The first material talks about the utilization of ceramic materials in the construction of vacuum devices. The next paper details the application of vacuum physics in soldering and brazing process. The last article deals with the utilization of vacuum technology in high frequency heating. The book will be of great use to professionals involved

  7. [Molecular-genetic analysis of DNA pol and TK of HSV-1 population using NGS technology].

    Science.gov (United States)

    Gus'kova, A A; Skoblov, M Iu; Lavrov, A V; Zubtsov, D A; Andronova, V L; Gol'dshteĭn, D V; Galegov, G A; Skoblov, Iu S

    2013-01-01

    It was determined the ratio of viral DNA and DNA from Vero cells using the polymerase chain reaction in real time in Vero cell lysate, infected with L2 strain of the herpes simplex virus type 1. Copy number of the virus reached a maximum after 24 hours of incubation of infection. Total DNA was isolated and sequenced using NGS technology by Ion Torrent device. Nucleotide sequences of the thymidine kinase gene (UL23) and DNA polymerase (UL30) were determined for a population of HSV-1 strain L2. Comparison of the primary structure of these genes with the corresponding nucleotide sequences of known strains of HSV-1 KOS and 17 was conducted. Differences in the structure of genes UL23 and UL30 between strain L2 and reference strains KOS and 17 are not important, because changes are found in non-conservative regions.

  8. ascatNgs: Identifying Somatically Acquired Copy-Number Alterations from Whole-Genome Sequencing Data.

    Science.gov (United States)

    Raine, Keiran M; Van Loo, Peter; Wedge, David C; Jones, David; Menzies, Andrew; Butler, Adam P; Teague, Jon W; Tarpey, Patrick; Nik-Zainal, Serena; Campbell, Peter J

    2016-12-08

    We have developed ascatNgs to aid researchers in carrying out Allele-Specific Copy number Analysis of Tumours (ASCAT). ASCAT is capable of detecting DNA copy number changes affecting a tumor genome when comparing to a matched normal sample. Additionally, the algorithm estimates the amount of tumor DNA in the sample, known as Aberrant Cell Fraction (ACF). ASCAT itself is an R-package which requires the generation of many file types. Here, we present a suite of tools to help handle this for the user. Our code is available on our GitHub site (https://github.com/cancerit). This unit describes both 'one-shot' execution and approaches more suitable for large-scale compute farms. © 2016 by John Wiley & Sons, Inc.

  9. The vacuum strikes back

    CERN Multimedia

    2007-01-01

    "Modern physics has shown that the vacuum, previously thought of as a stated of total nothingness, is really a seething background of virtual particles springing in and out of eixstence until they can seize enough energy to materialize as "real" particles." (1,5 page)

  10. ISR vacuum system

    CERN Multimedia

    1971-01-01

    Some of the most important components of the vacuum system are shown. At the left, the rectangular box is a sputter-ion pump inside its bake-out oven. The assembly in the centre includes a sector valve, three roughing valves, a turbomolecular pump, a rotary backing pump and auxiliary equipment. At the right, the small elbow houses a Bayard-

  11. LEP Vacuum Chamber

    CERN Multimedia

    1983-01-01

    This is a cut-out of a LEP vacuum chamber for dipole magnets showing the beam channel and the pumping channel with the getter (NEG) strip and its insulating supports. A water pipe connected to the cooling channel can also be seen at the back.The lead radiation shield lining is also shown. See also 8305563X.

  12. Vacuum-assisted delivery

    Science.gov (United States)

    ... a handle on the cup to move the baby through the birth canal. When is Vacuum-assisted Delivery Needed? Even after your cervix is fully dilated ( ... delivers the baby's head, you will push the baby the rest of the way out. After delivery, you can hold your baby on your tummy ...

  13. ISR vacuum system

    CERN Multimedia

    1970-01-01

    A pressure of 5 x 10-11 Torr has been obtained repreatedly in this pilot section of the ISR vacuum system. The pilot section is 45 m long is pumped by 9 sputter-ion pumps pf 350 l/s pumping speed, and is baked out at 200 degrees C before each pump down.

  14. LEP vacuum chamber, prototype

    CERN Multimedia

    CERN PhotoLab

    1983-01-01

    Final prototype for the LEP vacuum chamber, see 8305170 for more details. Here we see the strips of the NEG pump, providing "distributed pumping". The strips are made from a Zr-Ti-Fe alloy. By passing an electrical current, they were heated to 700 deg C.

  15. The rotating quantum vacuum

    CERN Document Server

    Davies, Paul Charles William; Manogue, C A; Davies, Paul C W; Dray, Tevian; Manogue, Corinne A

    1996-01-01

    We derive conditions for rotating particle detectors to respond in a variety of bounded spacetimes and compare the results with the folklore that particle detectors do not respond in the vacuum state appropriate to their motion. Applications involving possible violations of the second law of thermodynamics are briefly addressed.

  16. Cancer modelling in the NGS era - Part I: Emerging technology and initial modelling.

    Science.gov (United States)

    Rovigatti, Ugo

    2015-11-01

    It is today indisputable that great progresses have been made in our molecular understanding of cancer cells, but an effective implementation of such knowledge into dramatic cancer-cures is still belated and yet desperately needed. This review gives a snapshot at where we stand today in this search for cancer understanding and definitive treatments, how far we have progressed and what are the major obstacles we will have to overcome both technologically and for disease modelling. In the first part, promising 3rd/4th Generation Sequencing Technologies will be summarized (particularly IonTorrent and OxfordNanopore technologies). Cancer modelling will be then reviewed from its origin in XIX Century Germany to today's NGS applications for cancer understanding and therapeutic interventions. Developments after Molecular Biology revolution (1953) are discussed as successions of three phases. The first, PH1, labelled "Clonal Outgrowth" (from 1960s to mid 1980s) was characterized by discoveries in cytogenetics (Nowell, Rowley) and viral oncology (Dulbecco, Bishop, Varmus), which demonstrated clonality. Treatments were consequently dominated by a "cytotoxic eradication" strategy with chemotherapeutic agents. In PH2, (from the mid 1980s to our days) the description of cancer as "Gene Networks" led to targeted-gene-therapies (TGTs). TGTs are the focus of Section 3: in view of their apparent failing (Ephemeral Therapies), alternative strategies will be discussed in review part II (particularly cancer immunotherapy, CIT). Additional Pitfalls impinge on the concepts of tumour heterogeneity (inter/intra; ITH). The described pitfalls set the basis for a new phase, PH3, which is called "NGS Era" and will be also discussed with ten emerging cancer models in the Review 2nd part.

  17. Epigenetic DNA Methylation Profiling with MSRE: A Quantitative NGS Approach Using a Parkinson's Disease Test Case

    Directory of Open Access Journals (Sweden)

    Adam G. Marsh

    2016-11-01

    Full Text Available Epigenetics is a rapidly developing field focused on deciphering chemical fingerprints that accumulate on human genomes over time. As the nascent idea of precision medicine expands to encompass epigenetic signatures of diagnostic and prognostic relevance, there is a need for methodologies that provide high-throughput DNA methylation profiling measurements. Here we report a novel quantification methodology for computationally reconstructing site-specific CpG methylation status from next generation sequencing (NGS data using methyl-sensitive restriction endonucleases (MSRE. An integrated pipeline efficiently incorporates raw NGS metrics into a statistical discrimination platform to identify functional linkages between shifts in epigenetic DNA methylation and disease phenotypes in samples being analyzed. In this pilot proof-of-concept study we quantify and compare DNA methylation in blood serum of individuals with Parkinson's Disease relative to matched healthy blood profiles. Even with a small study of only six samples, a high degree of statistical discrimination was achieved based on CpG methylation profiles between groups, with 1,008 statistically different CpG sites (p textless 0.0025, after false discovery rate correction. A methylation load calculation was used to assess higher order impacts of methylation shifts on genes and pathways and most notably identified FGF3, FGF8, HTT, KMTA5, MIR8073, and YWHAG as differentially methylated genes with high relevance to Parkinson's Disease and neurodegeneration (based on PubMed literature citations. Of these, KMTA5 is a histone methyl-transferase gene and HTT is Huntington Disease Protein or Huntingtin, for which there are well established neurodegenerative impacts. The future need for precision diagnostics now requires more tools for exploring epigenetic processes that may be linked to cellular dysfunction and subsequent disease progression.

  18. Determining performance characteristics of an NGS-based HLA typing method for clinical applications.

    Science.gov (United States)

    Duke, J L; Lind, C; Mackiewicz, K; Ferriola, D; Papazoglou, A; Gasiewski, A; Heron, S; Huynh, A; McLaughlin, L; Rogers, M; Slavich, L; Walker, R; Monos, D S

    2016-03-01

    This study presents performance specifications of an in-house developed human leukocyte antigen (HLA) typing assay using next-generation sequencing (NGS) on the Illumina MiSeq platform. A total of 253 samples, previously characterized for HLA-A, -B, -C, -DRB1 and -DQB1 were included in this study, which were typed at high-resolution using a combination of Sanger sequencing, sequence-specific primer (SSP) and sequence-specific oligonucleotide probe (SSOP) technologies and recorded at the two-field level. Samples were selected with alleles that cover a high percentage of HLA specificities in each of five different race/ethnic groups: European, African-American, Asian Pacific Islander, Hispanic and Native American. Sequencing data were analyzed by two software programs, Omixon's target and GenDx's NGSengine. A number of metrics including allele balance, sensitivity, specificity, precision, accuracy and remaining ambiguity were assessed. Data analyzed by the two software systems are shown independently. The majority of alleles were identical in the exonic sequences (third field) with both programs for HLA-A, -B, -C and -DQB1 in 97.7% of allele determinations. Among the remaining discrepant genotype calls at least one of the analysis programs agreed with the reference typing. Upon additional manual analysis 100% of the 2530 alleles were concordant with the reference HLA genotypes; the remaining ambiguities did not exceed 0.8%. The results demonstrate the feasibility and significant benefit of HLA typing by NGS as this technology is highly accurate, eliminates virtually all ambiguities, provides complete sequencing information for the length of the HLA gene and forms the basis for utilizing a single methodology for HLA typing in the immunogenetics labs.

  19. RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.

    Science.gov (United States)

    D'Antonio, Mattia; D'Onorio De Meo, Paolo; Pallocca, Matteo; Picardi, Ernesto; D'Erchia, Anna Maria; Calogero, Raffaele A; Castrignanò, Tiziana; Pesole, Graziano

    2015-01-01

    The study of RNA has been dramatically improved by the introduction of Next Generation Sequencing platforms allowing massive and cheap sequencing of selected RNA fractions, also providing information on strand orientation (RNA-Seq). The complexity of transcriptomes and of their regulative pathways make RNA-Seq one of most complex field of NGS applications, addressing several aspects of the expression process (e.g. identification and quantification of expressed genes and transcripts, alternative splicing and polyadenylation, fusion genes and trans-splicing, post-transcriptional events, etc.). In order to provide researchers with an effective and friendly resource for analyzing RNA-Seq data, we present here RAP (RNA-Seq Analysis Pipeline), a cloud computing web application implementing a complete but modular analysis workflow. This pipeline integrates both state-of-the-art bioinformatics tools for RNA-Seq analysis and in-house developed scripts to offer to the user a comprehensive strategy for data analysis. RAP is able to perform quality checks (adopting FastQC and NGS QC Toolkit), identify and quantify expressed genes and transcripts (with Tophat, Cufflinks and HTSeq), detect alternative splicing events (using SpliceTrap) and chimeric transcripts (with ChimeraScan). This pipeline is also able to identify splicing junctions and constitutive or alternative polyadenylation sites (implementing custom analysis modules) and call for statistically significant differences in genes and transcripts expression, splicing pattern and polyadenylation site usage (using Cuffdiff2 and DESeq). Through a user friendly web interface, the RAP workflow can be suitably customized by the user and it is automatically executed on our cloud computing environment. This strategy allows to access to bioinformatics tools and computational resources without specific bioinformatics and IT skills. RAP provides a set of tabular and graphical results that can be helpful to browse, filter and export

  20. DEVELOPMENT OF ANALYTICAL METHODS FOR DETERMINING SUPPRESSOR CONCENTRATION IN THE MCU NEXT GENERATION SOLVENT (NGS)

    Energy Technology Data Exchange (ETDEWEB)

    Taylor-Pashow, K.; Fondeur, F.; White, T.; Diprete, D.; Milliken, C.

    2013-07-31

    Savannah River National Laboratory (SRNL) was tasked with identifying and developing at least one, but preferably two methods for quantifying the suppressor in the Next Generation Solvent (NGS) system. The suppressor is a guanidine derivative, N,N',N"-tris(3,7-dimethyloctyl)guanidine (TiDG). A list of 10 possible methods was generated, and screening experiments were performed for 8 of the 10 methods. After completion of the screening experiments, the non-aqueous acid-base titration was determined to be the most promising, and was selected for further development as the primary method. {sup 1}H NMR also showed promising results from the screening experiments, and this method was selected for further development as the secondary method. Other methods, including {sup 36}Cl radiocounting and ion chromatography, also showed promise; however, due to the similarity to the primary method (titration) and the inability to differentiate between TiDG and TOA (tri-n-ocytlamine) in the blended solvent, {sup 1}H NMR was selected over these methods. Analysis of radioactive samples obtained from real waste ESS (extraction, scrub, strip) testing using the titration method showed good results. Based on these results, the titration method was selected as the method of choice for TiDG measurement. {sup 1}H NMR has been selected as the secondary (back-up) method, and additional work is planned to further develop this method and to verify the method using radioactive samples. Procedures for analyzing radioactive samples of both pure NGS and blended solvent were developed and issued for the both methods.

  1. The Use of GOCE/GRACE Information in the Latest NGS xGeoid15 Model for the USA

    Science.gov (United States)

    Holmes, S. A.; Li, X.; Youngman, M.

    2015-12-01

    The U.S. National Geodetic Survey [NGS], through its Gravity for the Redefinition of the American Vertical Datum [GRAV-D] program, is flying airborne gravity surveys over the USA and its territories. By 2022, NGS intends that all orthometric heights in the USA will be determined in the field using a reliable national gravimetric geoid model to transform from geodetic heights obtained from GPS. Towards this end, all available airborne data has been incorporated into a new NGS experimental geoid model - xGEOID15. The xGEOID15 model is the second in a series of annual experimental geoid models that incorporates NGS GRAV-D airborne data. This series provides a useful benchmark for assessing and improving current techniques, to ultimately compute a geoid model that can support a national physical height system by 2022. Here, we focus on the combination of the latest GOCE/GRACE models with the terrestrial gravimetry (land/airborne) that was applied for xGeoid15. Comparisons against existing combination gravitational solutions, such as EGM2008 and EIGEN6C4, as well as recent geoid models, such as xGeoid14 and CGG2013, are interesting for what they reveal about the respective use of the GOCE/GRACE satgrav information.

  2. MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics.

    Science.gov (United States)

    Pandey, Ram Vinay; Pabinger, Stephan; Kriegner, Albert; Weinhäusel, Andreas

    2016-01-01

    Traditional Sanger sequencing as well as Next-Generation Sequencing have been used for the identification of disease causing mutations in human molecular research. The majority of currently available tools are developed for research and explorative purposes and often do not provide a complete, efficient, one-stop solution. As the focus of currently developed tools is mainly on NGS data analysis, no integrative solution for the analysis of Sanger data is provided and consequently a one-stop solution to analyze reads from both sequencing platforms is not available. We have therefore developed a new pipeline called MutAid to analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and analysis of Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as insertions and deletions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms including Sanger, Illumina, 454 and Ion Torrent. Furthermore, for NGS data analysis, five read mappers including BWA, TMAP, Bowtie, Bowtie2 and GSNAP and four variant callers including GATK-HaplotypeCaller, SAMTOOLS, Freebayes and VarScan2 pipelines are supported. MutAid is freely available at https://sourceforge.net/projects/mutaid.

  3. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.

    Science.gov (United States)

    Mendoza-Parra, Marco Antonio; Saleem, Mohamed-Ashick M; Blum, Matthias; Cholley, Pierre-Etienne; Gronemeyer, Hinrich

    2016-01-01

    The combination of massive parallel sequencing with a variety of modern DNA/RNA enrichment technologies provides means for interrogating functional protein-genome interactions (ChIP-seq), genome-wide transcriptional activity (RNA-seq; GRO-seq), chromatin accessibility (DNase-seq, FAIRE-seq, MNase-seq), and more recently the three-dimensional organization of chromatin (Hi-C, ChIA-PET). In systems biology-based approaches several of these readouts are generally cumulated with the aim of describing living systems through a reconstitution of the genome-regulatory functions. However, an issue that is often underestimated is that conclusions drawn from such multidimensional analyses of NGS-derived datasets critically depend on the quality of the compared datasets. To address this problem, we have developed the NGS-QC Generator, a quality control system that infers quality descriptors for any kind of ChIP-sequencing and related datasets. In this chapter we provide a detailed protocol for (1) assessing quality descriptors with the NGS-QC Generator; (2) to interpret the generated reports; and (3) to explore the database of QC indicators (www.ngs-qc.org) for >21,000 publicly available datasets.

  4. ngs (notochord granular surface) gene encodes a novel type of intermediate filament family protein essential for notochord maintenance in zebrafish.

    Science.gov (United States)

    Tong, Xiangjun; Xia, Zhidan; Zu, Yao; Telfer, Helena; Hu, Jing; Yu, Jingyi; Liu, Huan; Zhang, Quan; Sodmergen; Lin, Shuo; Zhang, Bo

    2013-01-25

    The notochord is an important organ involved in embryonic patterning and locomotion. In zebrafish, the mature notochord consists of a single stack of fully differentiated, large vacuolated cells called chordocytes, surrounded by a single layer of less differentiated notochordal epithelial cells called chordoblasts. Through genetic analysis of zebrafish lines carrying pseudo-typed retroviral insertions, a mutant exhibiting a defective notochord with a granular appearance was isolated, and the corresponding gene was identified as ngs (notochord granular surface), which was specifically expressed in the notochord. In the mutants, the notochord started to degenerate from 32 hours post-fertilization, and the chordocytes were then gradually replaced by smaller cells derived from chordoblasts. The granular notochord phenotype was alleviated by anesthetizing the mutant embryos with tricaine to prevent muscle contraction and locomotion. Phylogenetic analysis showed that ngs encodes a new type of intermediate filament (IF) family protein, which we named chordostatin based on its function. Under the transmission electron microcopy, bundles of 10-nm-thick IF-like filaments were enriched in the chordocytes of wild-type zebrafish embryos, whereas the chordocytes in ngs mutants lacked IF-like structures. Furthermore, chordostatin-enhanced GFP (EGFP) fusion protein assembled into a filamentous network specifically in chordocytes. Taken together, our work demonstrates that ngs encodes a novel type of IF protein and functions to maintain notochord integrity for larval development and locomotion. Our work sheds light on the mechanisms of notochord structural maintenance, as well as the evolution and biological function of IF family proteins.

  5. Gas bearing operates in vacuum

    Science.gov (United States)

    Perkins, G. S.

    1975-01-01

    Bearing has restrictions to reduce air leaks and is connected to external pumpout facility which removes exhausted air. Token amount of air which is lost to vacuum is easily removed by conventional vacuum pump.

  6. Tritium handling in vacuum systems

    Energy Technology Data Exchange (ETDEWEB)

    Gill, J.T. [Monsanto Research Corp., Miamisburg, OH (United States). Mound Facility; Coffin, D.O. [Los Alamos National Lab., NM (United States)

    1986-10-01

    This report provides a course in Tritium handling in vacuum systems. Topics presented are: Properties of Tritium; Tritium compatibility of materials; Tritium-compatible vacuum equipment; and Tritium waste treatment.

  7. Genotype-phenotype correlation in a cohort of Portuguese patients comprising the entire spectrum of VWD types: impact of NGS.

    Science.gov (United States)

    Fidalgo, Teresa; Salvado, Ramon; Corrales, Irene; Pinto, Silva Catarina; Borràs, Nina; Oliveira, Ana; Martinho, Patricia; Ferreira, Gisela; Almeida, Helena; Oliveira, Cristina; Marques, Dalila; Gonçalves, Elsa; Diniz, MJoão; Antunes, Margarida; Tavares, Alice; Caetano, Gonçalo; Kjöllerström, Paula; Maia, Raquel; Sevivas, Teresa S; Vidal, Francisco; Ribeiro, Leticia

    2016-07-01

    The diagnosis of von Willebrand disease (VWD), the most common inherited bleeding disorder, is characterised by a variable bleeding tendency and heterogeneous laboratory phenotype. The sequencing of the entire VWF coding region has not yet become a routine practice in diagnostic laboratories owing to its high costs. Nevertheless, next-generation sequencing (NGS) has emerged as an alternative to overcome this limitation. We aimed to determine the correlation of genotype and phenotype in 92 Portuguese individuals from 60 unrelated families with VWD; therefore, we directly sequenced VWF. We compared the classical Sanger sequencing approach and NGS to assess the value-added effect on the analysis of the mutation distribution in different types of VWD. Sixty-two different VWF mutations were identified, 27 of which had not been previously described. NGS detected 26 additional mutations, contributing to a broad overview of the mutant alleles present in each VWD type. Twenty-nine probands (48.3 %) had two or more mutations; in addition, mutations with pleiotropic effects were detected, and NGS allowed an appropriate classification for seven of them. Furthermore, the differential diagnosis between VWD 2B and platelet type VWD (n = 1), Bernard-Soulier syndrome and VWD 2B (n = 1), and mild haemophilia A and VWD 2N (n = 2) was possible. NGS provided an efficient laboratory workflow for analysing VWF. These findings in our cohort of Portuguese patients support the proposal that improving VWD diagnosis strategies will enhance clinical and laboratory approaches, allowing to establish the most appropriate treatment for each patient.

  8. Surge-damping vacuum valve

    Science.gov (United States)

    Bullock, Jack C.; Kelly, Benjamin E.

    1980-01-01

    A valve having a mechanism for damping out flow surges in a vacuum system which utilizes a slotted spring-loaded disk positioned adjacent the valve's vacuum port. Under flow surge conditions, the differential pressure forces the disk into sealing engagement with the vacuum port, thereby restricting the flow path to the slots in the disk damping out the flow surge.

  9. A Rotating Quantum Vacuum

    CERN Document Server

    De Lorenci, V A

    1996-01-01

    We investigate which mapping we have to use to compare measurements made in a rotating frame to those made in an inertial frame. Using a "Lorentz-like" coordinate transformation we obtain that creation-anihilation operators of a massless scalar field in the rotating frame are not the same as those of an inertial observer. This leads to a new vacuum state (a rotating vacuum) which is a superposition of positive and negative frequency Minkowski particles. After this, introducing an apparatus device coupled linearly with the field we obtain that there is a strong correlation between number of rotating particles (in a given state) obtained via canonical quantization and via response function of the rotating detector. Finally, we analyse polarization effects in circular accelerators in the proper frame of the electron making a connection with the inertial frame point of view.

  10. Dry vacuum pumps

    Science.gov (United States)

    Sibuet, R.

    2008-05-01

    For decades and for ultimate pressure below 1 mbar, oil-sealed Rotary Vane Pumps have been the most popular solution for a wide range of vacuum applications. In the late 80ies, Semiconductor Industry has initiated the development of the first dry roughing pumps. Today SC applications are only using dry pumps and dry pumping packages. Since that time, pumps manufacturers have developed dry vacuum pumps technologies in order to make them attractive for other applications. The trend to replace lubricated pumps by dry pumps is now spreading over many other market segments. For the Semiconductor Industry, it has been quite easy to understand the benefits of dry pumps, in terms of Cost of Ownership, process contamination and up-time. In this paper, Technology of Dry pumps, its application in R&D/industries, merits over conventional pumps and future growth scope will be discussed.

  11. PARAFFIN SEPARATION VACUUM DISTILLATION

    Directory of Open Access Journals (Sweden)

    Zaid A. Abdulrahman

    2013-05-01

    Full Text Available Simulated column performance curves were constructed for existing paraffin separation vacuum distillation column in LAB plant (Arab Detergent Company/Baiji-Iraq. The variables considered in this study are the thermodynamic model option, top vacuum pressure, top and bottom temperatures, feed temperature, feed composition & reflux ratio. Also simulated columns profiles for the temperature, vapor & liquid flow rates composition were constructed. Four different thermodynamic model options (SRK, TSRK, PR, and ESSO were used, affecting the results within 1-25% variation for the most cases.The simulated results show that about 2% to 8 % of paraffin (C10, C11, C12, & C13 present at the bottom stream which may cause a problem in the LAB plant. The major variations were noticed for the top temperature & the  paraffin weight fractions at bottom section with top vacuum pressure. The bottom temperature above 240 oC is not recommended because the total bottom flow rate decreases sharply, where as  the weight fraction of paraffins decrease slightly. The study gives evidence about a successful simulation with CHEMCAD

  12. e-DNA meta-barcoding: from NGS raw data to taxonomic profiling.

    Science.gov (United States)

    Bruno, Fosso; Marinella, Marzano; Santamaria, Monica

    2015-01-01

    In recent years, thanks to the essential support provided by the Next-Generation Sequencing (NGS) technologies, Metagenomics is enabling the direct access to the taxonomic and functional composition of mixed microbial communities living in any environmental niche, without the prerequisite to isolate or culture the single organisms. This approach has already been successfully applied for the analysis of many habitats, such as water or soil natural environments, also characterized by extreme physical and chemical conditions, food supply chains, and animal organisms, including humans. A shotgun sequencing approach can lead to investigate both organisms and genes diversity. Anyway, if the purpose is limited to explore the taxonomic complexity, an amplicon-based approach, based on PCR-targeted sequencing of selected genetic species markers, commonly named "meta-barcodes", is desirable. Among the genomic regions most widely used for the discrimination of bacterial organisms, in some cases up to the species level, some hypervariable domains of the gene coding for the 16S rRNA occupy a prominent place. The amplification of a certain meta-barcode from a microbial community through the use of PCR primers able to work in the entire considered taxonomic group is the first task after the extraction of the total DNA. Generally, this step is followed by the high-throughput sequencing of the resulting amplicons libraries by means of a selected NGS platform. Finally, the interpretation of the huge amount of produced data requires appropriate bioinformatics tools and know-how in addition to efficient computational resources. Here a computational methodology suitable for the taxonomic characterization of 454 meta-barcode sequences is described in detail. In particular, a dataset covering the V1-V3 region belonging to the bacterial 16S rRNA coding gene and produced in the Human Microbiome Project (HMP) from a palatine tonsils sample is analyzed. The proposed exercise includes the

  13. NGS-200型GPS测量系统在建立三维控制网中的应用%Application of NGS-200 GPS in Establishment of Three-Dimensional Control Network

    Institute of Scientific and Technical Information of China (English)

    赵俊兰; 冯建秋

    2001-01-01

    介绍了NGS-200GPS测量系统的组成及原理,阐述了利用该系统在北京八大处公园建立测区首级平面控制网的具体做法,对布网方案、数据处理、平差计算和测量结果可靠性进行了分析.实践表明NGS-200GPS在八大处公园山地地形复杂,树木覆盖较密的情况下 ,其性能仍然比较稳定,所取得的测量结果达到了国家有关规范要求.该系统替代常规测量技术是经济、合理可靠的.

  14. NGS-based identification of druggable alterations and signaling pathways – hepatocellular carcinoma case report

    Directory of Open Access Journals (Sweden)

    Kotelnikova E. A.

    2015-12-01

    Full Text Available Aim. To identify potential cancer driving or clinically relevant molecular events for a patient with hepatocellular carcinoma. Methods. In order to achieve this goal, we performed RNA-seq and exome sequencing for the tumor tissue and its matched control. We annotated the alterations found using several publicly available databases and bioinformatics tools. Results. We identified several differentially expressed genes linked to the classical sorafenib treatment as well as additional pathways potentially druggable by therapies studied in clinical trials (Erlotinib, Lapatinib and Temsirolimus. Several germline mutations, found in XRCC1, TP53 and DPYD, according to the data from other clinical trials, could be related to the increased sensitivity to platinum therapies and reduced sensitivity to 5-Fluorouracil. We also identified several potentially driving mutations that could not be currently linked to therapies, like deletion in CIRBP, SNVs in BTG1, ERBB3, TCF7L2 et al. Conclusions. The presented study shows the potential usefulness of the integrated approach to the NGS data analysis, including the analysis of germline mutations and transcriptome in addition to the cancer panel or the exome sequencing data.

  15. Vacuum bell therapy

    Science.gov (United States)

    Sesia, Sergio

    2016-01-01

    Background For specific therapy to correct pectus excavatum (PE), conservative treatment with the vacuum bell (VB) was introduced more than 10 years ago in addition to surgical repair. Preliminary results using the VB were encouraging. We report on our 13-year experience with the VB treatment including the intraoperative use during the Nuss procedure and present some technical innovations. Methods A VB with a patient-activated hand pump is used to create a vacuum at the anterior chest wall. Three different sizes of vacuum bells, as well as a model fitted for young women, exist. The appropriate size is selected according to the individual patient’s age and ventral surface. The device should be used at home for a minimum of 30 minutes (twice a day), and may be used up to a maximum of several hours daily. The intensity of the applied negative pressure can be evaluated with an integrated pressure gauge during follow-up visits. A prototype of an electronic model enables us to measure the correlation between the applied negative pressure and the elevation of the anterior chest wall. Results Since 2003, approx. 450 patients between 2 to 61 years of age started the VB therapy. Age and gender specific differences, depth of PE, symmetry or asymmetry, and concomitant malformations such as scoliosis and/or kyphosis influence the clinical course and success of VB therapy. According to our experience, we see three different groups of patients. Immediate elevation of the sternum was confirmed thoracoscopically during the Nuss procedure in every patient. Conclusions The VB therapy has been established as an alternative therapeutic option in selected patients suffering from PE. The initial results up to now are encouraging, but long-term results comprising more than 15 years are so far lacking, and further evaluation and follow-up studies are necessary. PMID:27747177

  16. Photometric calibration of NGS/POSS and ESO/SRC plates using the NOAO PDS measuring engine. II - Surface photometry

    Science.gov (United States)

    Cutri, Roc M.; Low, Frank J.; Guhathakurta, Puragra

    1993-01-01

    In this paper we present a method to calibrate surface photometry of faint sources measured from direct photographic plates, such as those of the NGS/POSS and ESO/SRC Sky Survey. This calibration procedure does not require scanning sensitometer spots on the plates, but instead uses measurements of the brightness profiles of many faint stars of known brightness to fit a linearized approximation to the characteristic curve. The approximation is valid for only low- to medium-density emulsions, so this technique is appropriate only for relatively faint emission. Comparison between measurements of representative extended sources on the NGS/POSS and CCD images indicates that surface photometry can be obtained from the Sky Survey plates accurate to 0.1-0.3 mag in the range mu(B) between 23 and 27 and mu(R) between 22 and 26 mag/sq arcsec.

  17. Tratamento de dados de NGS para pesquisa de novas mutações associadas à miocardiopatia hipertrófica

    OpenAIRE

    2012-01-01

    Tese de mestrado em Bioestatística, apresentada à Universidade de Lisboa, através da Faculdade de Ciências, 2012 A Sequenciação de Nova Geração (NGS - Next Generation Sequencing) está a revolucionar a investigação na área da biomédica, contribuindo significativamente para o avanço da medicina personalizada. A NGS, apoiando-se nos conhecimentos da Estatística Bayesiana e da Bioinformática para a análise e tratamento dos dados que esta técnica origina, torna-se num excelente exemplo dos novo...

  18. Plasmons in QED vacuum

    Science.gov (United States)

    Petrov, E. Yu.; Kudrin, A. V.

    2016-09-01

    The problem of longitudinal oscillations of an electric field and a charge polarization density in a quantum electrodynamics (QED) vacuum is considered. Within the framework of semiclassical analysis, we calculate time-periodic solutions of bosonized (1 +1 )-dimensional QED (massive Schwinger model). Applying the Bohr-Sommerfeld quantization condition, we determine the mass spectrum of charge-zero bound states (plasmons) which correspond in quantum theory to the found classical solutions. We show that the existence of such plasmons does not contradict any fundamental physical laws and study qualitatively their excitation in a (3 +1 )-dimensional real world.

  19. Vacuum ultraviolet spectroscopy I

    CERN Document Server

    Samson, James A; Lucatorto, Thomas

    1998-01-01

    This volume is for practitioners, experimentalists, and graduate students in applied physics, particularly in the fields of atomic and molecular physics, who work with vacuum ultraviolet applications and are in need of choosing the best type of modern instrumentation. It provides first-hand knowledge of the state-of-the-art equipment sources and gives technical information on how to use it, along with a broad reference bibliography.Key Features* Aimed at experimentalists who are in need of choosing the best type of modern instrumentation in this applied field* Contains a detailed chapter on la

  20. R&D ERL: Vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Mapes, M.; Smart, L.; Weiss, D.; Steszyn, A.; Todd, R.

    2010-01-01

    The ERL Vacuum systems are depicted in a figure. ERL has eight vacuum volumes with various sets of requirements. A summary of vacuum related requirements is provided in a table. Five of the eight volumes comprise the electron beamline. They are the 5-cell Superconducting RF Cavity, Superconducting e-gun, injection, loop and beam dump. Two vacuum regions are the individual cryostats insulating the 5-cell Superconducting RF Cavity and the Superconducting e-gun structures. The last ERL vacuum volume not shown in the schematic is the laser transport line. The beamline vacuum regions are separated by electropneumatic gate valves. The beam dump is common with loop beamline but is considered a separate volume due to geometry and requirements. Vacuum in the 5-cell SRF cavity is maintained in the {approx}10{sup -9} torr range at room temperature by two 20 l/s ion pumps and in the e-gun SRF cavity by one 60 l/s ion pump. Vacuum in the SRF cavities operated at 2{sup o}K is reduced to low 10{sup -11} torr via cryopumping of the cavity walls. The cathode of the e-gun must be protected from poisoning, which can occur if vacuum adjacent to the e-gun in the injection line exceeds 10-11 torr range in the injection warm beamline near the e-gun exit. The vacuum requirements for beam operation in the loop and beam dump are 10-9 torr range. The beamlines are evacuated from atmospheric pressure to high vacuum level with a particulate free, oil free turbomolecular pumping cart. 25 l/s shielded ion pumps distributed throughout the beamlines maintain the vacuum requirement. Due to the more demanding vacuum requirement of the injection beamline proximate to the e-gun, a vacuum bakeout of the injection beamline is required. In addition, two 200 l/s diode ion pumps and supplemental pumping provided by titanium sublimation pumps are installed in the injection line just beyond the exit of the e-gun. Due to expected gas load a similar pumping arrangement is planned for the beam dump. The

  1. Improvement of PCR-free NGS Library Preparation to Obtain Uniform Read Coverage of Genome with Extremely High AT Content

    OpenAIRE

    Williams, A.; Storton, D.; Buckles, J.; Llinas, M.; Wang, Wei

    2012-01-01

    PCR amplification is commonly used in generating libraries for Next-Generation Sequencing (NGS) to efficiently enrich and amplify sequenceable DNA fragments. However, it introduces bias in the representation of the original complex template DNA. Such artifact has devastating effects in sequencing genomes with highly unbalanced base composition: regions of extremely high or low GC content, which are a substantial fraction of such genomes, are often covered with zero or near-zero read depth. PC...

  2. An NGS-Independent Strategy for Proteome-Wide Identification of Single Amino Acid Polymorphisms by Mass Spectrometry.

    Science.gov (United States)

    Xiong, Yun; Guo, Yufeng; Xiao, Weidi; Cao, Qichen; Li, Shanshan; Qi, Xianni; Zhang, Zhidan; Wang, Qinhong; Shui, Wenqing

    2016-03-01

    Detection of proteins containing single amino acid polymorphisms (SAPs) encoded by nonsynonymous SNPs (nsSNPs) can aid researchers in studying the functional significance of protein variants. Most proteogenomic approaches for large-scale SAPs mapping require construction of a sample-specific database containing protein variants predicted from the next-generation sequencing (NGS) data. Searching shotgun proteomic data sets against these NGS-derived databases allowed for identification of SAP peptides, thus validating the proteome-level sequence variation. Contrary to the conventional approaches, our study presents a novel strategy for proteome-wide SAP detection without relying on sample-specific NGS data. By searching a deep-coverage proteomic data set from an industrial thermotolerant yeast strain using our strategy, we identified 337 putative SAPs compared to the reference genome. Among the SAP peptides identified with stringent criteria, 85.2% of SAP sites were validated using whole-genome sequencing data obtained for this organism, which indicates high accuracy of SAP identification with our strategy. More interestingly, for certain SAP peptides that cannot be predicted by genomic sequencing, we used synthetic peptide standards to verify expression of peptide variants in the proteome. Our study has provided a unique tool for proteogenomics to enable proteome-wide direct SAP identification and capture nongenetic protein variants not linked to nsSNPs.

  3. Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

    Science.gov (United States)

    Scarcelli, N; Mariac, C; Couvreur, T L P; Faye, A; Richard, D; Sabot, F; Berthouly-Salazar, C; Vigouroux, Y

    2016-03-01

    Next-generation sequencing allows access to a large quantity of genomic data. In plants, several studies used whole chloroplast genome sequences for inferring phylogeography or phylogeny. Even though the chloroplast is a haploid organelle, NGS plastome data identified a nonnegligible number of intra-individual polymorphic SNPs. Such observations could have several causes such as sequencing errors, the presence of heteroplasmy or transfer of chloroplast sequences in the nuclear and mitochondrial genomes. The occurrence of allelic diversity has practical important impacts on the identification of diversity, the analysis of the chloroplast data and beyond that, significant evolutionary questions. In this study, we show that the observed intra-individual polymorphism of chloroplast sequence data is probably the result of plastid DNA transferred into the mitochondrial and/or the nuclear genomes. We further assess nine different bioinformatics pipelines' error rates for SNP and genotypes calling using SNPs identified in Sanger sequencing. Specific pipelines are adequate to deal with this issue, optimizing both specificity and sensitivity. Our results will allow a proper use of whole chloroplast NGS sequence and will allow a better handling of NGS chloroplast sequence diversity.

  4. COV2HTML: a visualization and analysis tool of bacterial next generation sequencing (NGS) data for postgenomics life scientists.

    Science.gov (United States)

    Monot, Marc; Orgeur, Mickael; Camiade, Emilie; Brehier, Clément; Dupuy, Bruno

    2014-03-01

    COV2HTML is an interactive web interface, which is addressed to biologists, and allows performing both coverage visualization and analysis of NGS alignments performed on prokaryotic organisms (bacteria and phages). It combines two processes: a tool that converts the huge NGS mapping or coverage files into light specific coverage files containing information on genetic elements; and a visualization interface allowing a real-time analysis of data with optional integration of statistical results. To demonstrate the scope of COV2HTML, the program was tested with data from two published studies. The first data were from RNA-seq analysis of Campylobacter jejuni, based on comparison of two conditions with two replicates. We were able to recover 26 out of 27 genes highlighted in the publication using COV2HTML. The second data comprised of stranded TSS and RNA-seq data sets on the Archaea Sulfolobus solfataricus. COV2HTML was able to highlight most of the TSSs from the article and allows biologists to visualize both TSS and RNA-seq on the same screen. The strength of the COV2HTML interface is making possible NGS data analysis without software installation, login, or a long training period. A web version is accessible at https://mmonot.eu/COV2HTML/ . This website is free and open to users without any login requirement.

  5. RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes.

    Directory of Open Access Journals (Sweden)

    Cheng Yuan

    Full Text Available The number of transcriptomic sequencing projects of various non-model organisms is still accumulating rapidly. As non-coding RNAs (ncRNAs are highly abundant in living organism and play important roles in many biological processes, identifying fragmentary members of ncRNAs in small RNA-seq data is an important step in post-NGS analysis. However, the state-of-the-art ncRNA search tools are not optimized for next-generation sequencing (NGS data, especially for very short reads. In this work, we propose and implement a comprehensive ncRNA classification tool (RNA-CODE for very short reads. RNA-CODE is specifically designed for ncRNA identification in NGS data that lack quality reference genomes. Given a set of short reads, our tool classifies the reads into different types of ncRNA families. The classification results can be used to quantify the expression levels of different types of ncRNAs in RNA-seq data and ncRNA composition profiles in metagenomic data, respectively. The experimental results of applying RNA-CODE to RNA-seq of Arabidopsis and a metagenomic data set sampled from human guts demonstrate that RNA-CODE competes favorably in both sensitivity and specificity with other tools. The source codes of RNA-CODE can be downloaded at http://www.cse.msu.edu/~chengy/RNA_CODE.

  6. A new method to prevent carry-over contaminations in two-step PCR NGS library preparations.

    Science.gov (United States)

    Seitz, Volkhard; Schaper, Sigrid; Dröge, Anja; Lenze, Dido; Hummel, Michael; Hennig, Steffen

    2015-11-16

    Two-step PCR procedures are an efficient and well established way to generate amplicon libraries for NGS sequencing. However, there is a high risk of cross-contamination by carry-over of amplicons from first to second amplification rounds, potentially leading to severe misinterpretation of results. Here we describe a new method able to prevent and/or to identify carry-over contaminations by introducing the K-box, a series of three synergistically acting short sequence elements. Our K-boxes are composed of (i) K1 sequences for suppression of contaminations, (ii) K2 sequences for detection of possible residual contaminations and (iii) S sequences acting as separators to avoid amplification bias. In order to demonstrate the effectiveness of our method we analyzed two-step PCR NGS libraries derived from a multiplex PCR system for detection of T-cell receptor beta gene rearrangements. We used this system since it is of high clinical relevance and may be affected by very low amounts of contaminations. Spike-in contaminations are effectively blocked by the K-box even at high rates as demonstrated by ultra-deep sequencing of the amplicons. Thus, we recommend implementation of the K-box in two-step PCR-based NGS systems for research and diagnostic applications demanding high sensitivity and accuracy.

  7. Of vacuum and gas

    CERN Multimedia

    Katarina Anthony

    2015-01-01

    A new LHCb programme is delving into uncharted waters for the LHC: exploring how protons interact with noble gases inside the machine pipe. While, at first glance, it may sound risky for the overall quality of the vacuum in the machine, the procedure is safe and potentially very rich in rewards. The results could uncover the high-energy helium-proton cross-section (with all the implications thereof), explore new boundaries of the quark-gluon plasma and much more.   As the beam passes through LHCb, interactions with neon gas allow the experiment to measure the full beam profile. In this diagram, beam 1 (blue) and beam 2 (red) are measured by the surrounding VELO detector. It all begins with luminosity. In 2011, LHCb set out to further improve its notoriously precise measurements of the beam profile, using the so-called Beam-Gas Imaging (BGI) method. BGI does exactly what it says on the tin: a small amount of gas is inserted into the vacuum, increasing the rate of collisions around the interaction ...

  8. LHC vacuum system

    CERN Document Server

    Gröbner, Oswald

    1999-01-01

    The Large Hadron Collider (LHC) project, now in the advanced construction phase at CERN, comprises two proton storage rings with colliding beams of 7-TeV energy. The machine is housed in the existing LEP tunnel with a circumference of 26.7 km and requires a bending magnetic field of 8.4 T with 14-m long superconducting magnets. The beam vacuum chambers comprise the inner 'cold bore' walls of the magnets. These magnets operate at 1.9 K, and thus serve as very good cryo-pumps. In order to reduce the cryogenic power consumption, both the heat load from synchrotron radiation emitted by the proton beams and the resistive power dissipation by the beam image currents have to be absorbed on a 'beam screen', which operates between 5 and 20 K and is inserted inside the vacuum chamber. The design of this beam screen represents a technological challenge in view of the numerous and often conflicting requirements and the very tight mechanical tolerances imposed. The synchrotron radiation produces strong outgassing from the...

  9. Vacuum metastability with black holes

    Energy Technology Data Exchange (ETDEWEB)

    Burda, Philipp [Centre for Particle Theory, Durham University,South Road, Durham, DH1 3LE (United Kingdom); Gregory, Ruth [Centre for Particle Theory, Durham University,South Road, Durham, DH1 3LE (United Kingdom); Perimeter Institute, 31 Caroline Street North,Waterloo, ON, N2L 2Y5 (Canada); Moss, Ian G. annd [School of Mathematics and Statistics, Newcastle University,Newcastle Upon Tyne, NE1 7RU (United Kingdom)

    2015-08-24

    We consider the possibility that small black holes can act as nucleation seeds for the decay of a metastable vacuum, focussing particularly on the Higgs potential. Using a thin-wall bubble approximation for the nucleation process, which is possible when generic quantum gravity corrections are added to the Higgs potential, we show that primordial black holes can stimulate vacuum decay. We demonstrate that for suitable parameter ranges, the vacuum decay process dominates over the Hawking evaporation process. Finally, we comment on the application of these results to vacuum decay seeded by black holes produced in particle collisions.

  10. 2008 South Carolina Lidar: Darlington County

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The project area is composed of 16 counties in the State of South Carolina - Cherokee, Union, Laurens, Greenwood, Newberry, Chester, Fairfield, Lancaster,...

  11. AG-NGS: a powerful and user-friendly computing application for the semi-automated preparation of next-generation sequencing libraries using open liquid handling platforms.

    Science.gov (United States)

    Callejas, Sergio; Álvarez, Rebeca; Benguria, Alberto; Dopazo, Ana

    2014-01-01

    Next-generation sequencing (NGS) is becoming one of the most widely used technologies in the field of genomics. Library preparation is one of the most critical, hands-on, and time-consuming steps in the NGS workflow. Each library must be prepared in an independent well, increasing the number of hours required for a sequencing run and the risk of human-introduced error. Automation of library preparation is the best option to avoid these problems. With this in mind, we have developed automatic genomics NGS (AG-NGS), a computing application that allows an open liquid handling platform to be transformed into a library preparation station without losing the potential of an open platform. Implementation of AG-NGS does not require programming experience, and the application has also been designed to minimize implementation costs. Automated library preparation with AG-NGS generated high-quality libraries from different samples, demonstrating its efficiency, and all quality control parameters fell within the range of optimal values.

  12. MicNeSs: genotyping microsatellite loci from a collection of (NGS) reads.

    Science.gov (United States)

    Suez, Marie; Behdenna, Abdelkader; Brouillet, Sophie; Graça, Paula; Higuet, Dominique; Achaz, Guillaume

    2016-03-01

    Microsatellites are widely used in population genetics to uncover recent evolutionary events. They are typically genotyped using capillary sequencer, which capacity is usually limited to 9, at most 12 loci for each run, and which analysis is a tedious task that is performed by hand. With the rise of next-generation sequencing (NGS), a much larger number of loci and individuals are available from sequencing: for example, on a single run of a GS Junior, 28 loci from 96 individuals are sequenced with a 30X cover. We have developed an algorithm to automatically and efficiently genotype microsatellites from a collection of reads sorted by individual (e.g. specific PCR amplifications of a locus or a collection of reads that encompass a locus of interest). As the sequencing and the PCR amplification introduce artefactual insertions or deletions, the set of reads from a single microsatellite allele shows several length variants. The algorithm infers, without alignment, the true unknown allele(s) of each individual from the observed distributions of microsatellites length of all individuals. MicNeSs, a python implementation of the algorithm, can be used to genotype any microsatellite locus from any organism and has been tested on 454 pyrosequencing data of several loci from fruit flies (a model species) and red deers (a nonmodel species). Without any parallelization, it automatically genotypes 22 loci from 441 individuals in 11 hours on a standard computer. The comparison of MicNeSs inferences to the standard method shows an excellent agreement, with some differences illustrating the pros and cons of both methods.

  13. Next Generation Solvent (NGS): Development for Caustic-Side Solvent Extraction of Cesium

    Energy Technology Data Exchange (ETDEWEB)

    Moyer, Bruce A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Birdwell, Jr, Joseph F. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Bonnesen, Peter V. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Bruffey, Stephanie H. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Delmau, Laetitia Helene [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Duncan, Nathan C. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Ensor, Dale [Tennessee Technological Univ., Cookeville, TN (United States); Hill, Talon G. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lee, Denise L. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Rajbanshi, Arbin [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Roach, Benjamin D. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Szczygiel, Patricia L. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Sloop, Jr., Frederick V. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Stoner, Erica L. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Williams, Neil J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2014-03-01

    This report summarizes the FY 2010 and 2011 accomplishments at Oak Ridge National Laboratory (ORNL) in developing the Next Generation Caustic-Side Solvent Extraction (NG-CSSX) process, referred to commonly as the Next Generation Solvent (NGS), under funding from the U.S. Department of Energy, Office of Environmental Management (DOE-EM), Office of Technology Innovation and Development. The primary product of this effort is a process solvent and preliminary flowsheet capable of meeting a target decontamination factor (DF) of 40,000 for worst-case Savannah River Site (SRS) waste with a concentration factor of 15 or higher in the 18-stage equipment configuration of the SRS Modular Caustic-Side Solvent Extraction Unit (MCU). In addition, the NG-CSSX process may be readily adapted for use in the SRS Salt Waste Processing Facility (SWPF) or in supplemental tank-waste treatment at Hanford upon appropriate solvent or flowsheet modifications. Efforts in FY 2010 focused on developing a solvent composition and process flowsheet for MCU implementation. In FY 2011 accomplishments at ORNL involved a wide array of chemical-development activities and testing up through single-stage hydraulic and mass-transfer tests in 5-cm centrifugal contactors. Under subcontract from ORNL, Argonne National Laboratory (ANL) designed a preliminary flowsheet using ORNL cesium distribution data, and Tennessee Technological University confirmed a chemical model for cesium distribution ratios (DCs) as a function of feed composition. Interlaboratory efforts were coordinated with complementary engineering tests carried out (and reported separately) by personnel at Savannah River National Laboratory (SRNL) and Savannah River Remediation (SRR) with helpful advice by Parsons Engineering and General Atomics on aspects of possible SWPF implementation.

  14. Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly.

    Science.gov (United States)

    Liu, Tsunglin; Tsai, Cheng-Hung; Lee, Wen-Bin; Chiang, Jung-Hsien

    2013-01-01

    Next-Generation-Sequencing is advantageous because of its much higher data throughput and much lower cost compared with the traditional Sanger method. However, NGS reads are shorter than Sanger reads, making de novo genome assembly very challenging. Because genome assembly is essential for all downstream biological studies, great efforts have been made to enhance the completeness of genome assembly, which requires the presence of long reads or long distance information. To improve de novo genome assembly, we develop a computational program, ARF-PE, to increase the length of Illumina reads. ARF-PE takes as input Illumina paired-end (PE) reads and recovers the original DNA fragments from which two ends the paired reads are obtained. On the PE data of four bacteria, ARF-PE recovered >87% of the DNA fragments and achieved >98% of perfect DNA fragment recovery. Using Velvet, SOAPdenovo, Newbler, and CABOG, we evaluated the benefits of recovered DNA fragments to genome assembly. For all four bacteria, the recovered DNA fragments increased the assembly contiguity. For example, the N50 lengths of the P. brasiliensis contigs assembled by SOAPdenovo and Newbler increased from 80,524 bp to 166,573 bp and from 80,655 bp to 193,388 bp, respectively. ARF-PE also increased assembly accuracy in many cases. On the PE data of two fungi and a human chromosome, ARF-PE doubled and tripled the N50 length. However, the assembly accuracies dropped, but still remained >91%. In general, ARF-PE can increase both assembly contiguity and accuracy for bacterial genomes. For complex eukaryotic genomes, ARF-PE is promising because it raises assembly contiguity. But future error correction is needed for ARF-PE to also increase the assembly accuracy. ARF-PE is freely available at http://140.116.235.124/~tliu/arf-pe/.

  15. THERMOCOUPLE VACUUM GAUGE

    Science.gov (United States)

    Price, G.W.

    1954-08-01

    A protector device is described for use in controlling the pressure within a cyclotron. In particular, an electrical circuit functions to actuate a vacuum pump when a predetermined low pressure is reached and disconnect the pump when the pressure increases abcve a certain value. The principal feature of the control circuit lies in the use of a voltage divider network at the input to a relay control tube comprising two parallel, adjustable resistances wherein one resistor is switched into the circuit when the relay connects the pump to a power source. With this arrangement the relay is energized at one input level received from a sensing element within the cyclotron chamber and is de-energized when a second input level, representing the higher pressure limit, is reached.

  16. Vacuum Energy Sequestering and Graviton Loops

    CERN Document Server

    Kaloper, Nemanja

    2016-01-01

    We recently formulated a local mechanism of vacuum energy sequester. This mechanism automatically removes all matter loop contributions to vacuum energy from the stress energy tensor which sources the curvature. Here we adapt the local vacuum energy sequestering mechanism to also cancel all the vacuum energy loops involving virtual gravitons, in addition to the vacuum energy generated by matter fields alone.

  17. High Vacuum Furnace for HIRFL-CSR

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    In order to satisfy the requirement of ultra-high vacuum and low out-gassing rate of materials which are used to make HIIRFL-CSR vacuum chambers, a high vacuum furnace for degassing the beam chambers, flanges, and the other vacuum components has been designed and manufactured by IMP and Vacuum Equipment Factory in Lanzhou.

  18. Vacuum Energy Sequestering and Graviton Loops

    OpenAIRE

    Kaloper, Nemanja; Padilla, Antonio

    2016-01-01

    We recently formulated a local mechanism of vacuum energy sequester. This mechanism automatically removes all matter loop contributions to vacuum energy from the stress energy tensor which sources the curvature. Here we adapt the local vacuum energy sequestering mechanism to also cancel all the vacuum energy loops involving virtual gravitons, in addition to the vacuum energy generated by matter fields alone.

  19. Vacuum Gas Tungsten Arc Welding

    Science.gov (United States)

    Weeks, J. L.; Todd, D. T.; Wooten, J. R.

    1997-01-01

    A two-year program investigated vacuum gas tungsten arc welding (VGTAW) as a method to modify or improve the weldability of normally difficult-to-weld materials. After a vacuum chamber and GTAW power supply were modified, several difficult-to-weld materials were studied and key parameters developed. Finally, Incoloy 903 weld overlays were produced without microfissures.

  20. Vacuum enhanced cutaneous biopsy instrument

    Science.gov (United States)

    Collins, Joseph

    2000-01-01

    A syringe-like disposable cutaneous biopsy instrument equipped with a tubular blade at its lower end, and designed so that a vacuum is created during use, said vacuum serving to retain undeformed a plug of tissue cut from a patient's skin.

  1. ULTRARAPID VACUUM-MICROWAVE HISTOPROCESSING

    NARCIS (Netherlands)

    KOK, LP; BOON, ME

    1995-01-01

    A novel histoprocessing method for paraffin sections is presented in which the combination of vacuum and microwave exposure is the key element. By exploiting the decrease in boiling temperature under vacuum, the liquid molecules in the tissues have been successfully extracted and exchanged at relati

  2. ULTRARAPID VACUUM-MICROWAVE HISTOPROCESSING

    NARCIS (Netherlands)

    KOK, LP; BOON, ME

    A novel histoprocessing method for paraffin sections is presented in which the combination of vacuum and microwave exposure is the key element. By exploiting the decrease in boiling temperature under vacuum, the liquid molecules in the tissues have been successfully extracted and exchanged at

  3. Breather cloth for vacuum curing

    Science.gov (United States)

    Reed, M. W.

    1979-01-01

    Finely-woven nylon cloth that has been treated with Teflon improves vacuum adhesive bonding of coatings to substrates. Cloth is placed over coating; entire assembly, including substrate, coating, and cloth, is placed in plastic vacuum bag for curing. Cloth allows coating to "breathe" when bag is evacuated. Applications include bonding film coatings to solar concentrators and collectors.

  4. Hadron Contribution to Vacuum Polarisation

    Science.gov (United States)

    Davier, M.; Hoecker, A.; Malaescu, B.; Zhang, Z.

    2016-10-01

    Precision tests of the Standard Theory require theoretical predictions taking into account higher-order quantum corrections. Among these vacuum polarisation plays a predominant role. Vacuum polarisation originates from creation and annihilation of virtual particle-antiparticle states. Leptonic vacuum polarisation can be computed from quantum electrodynamics. Hadronic vacuum polarisation cannot because of the non-perturbative nature of QCD at low energy. The problem is remedied by establishing dispersion relations involving experimental data on the cross section for e+ e- annihilation into hadrons. This chapter sets the theoretical and experimental scene and reviews the progress achieved in the last decades thanks to more precise and complete data sets. Among the various applications of hadronic vacuum polarisation calculations, two are emphasised: the contribution to the anomalous magnetic moment of the muon, and the running of the fine structure constant α to the Z mass scale. They are fundamental ingredients to high precision tests of the Standard Theory.

  5. Hadron Contribution to Vacuum Polarisation

    CERN Document Server

    Davier, M; Malaescu, B; Zhang, Z

    2016-01-01

    Precision tests of the Standard Theory require theoretical predictions taking into account higher-order quantum corrections. Among these vacuum polarisation plays a predominant role. Vacuum polarisation originates from creation and annihilation of virtual particle–antiparticle states. Leptonic vacuum polarisation can be computed from quantum electrodynamics. Hadronic vacuum polarisation cannot because of the non-perturbative nature of QCD at low energy. The problem is remedied by establishing dispersion relations involving experimental data on the cross section for e+ e− annihilation into hadrons. This chapter sets the theoretical and experimental scene and reviews the progress achieved in the last decades thanks to more precise and complete data sets. Among the various applications of hadronic vacuum polarisation calculations, two are emphasised: the contribution to the anomalous magnetic moment of the muon, and the running of the fine structure constant α to the Z mass scale. They are fundamental ingre...

  6. Vacuum energy as dark matter

    Science.gov (United States)

    Albareti, F. D.; Cembranos, J. A. R.; Maroto, A. L.

    2014-12-01

    We consider the vacuum energy of massive quantum fields in an expanding universe. We define a conserved renormalized energy-momentum tensor by means of a comoving cutoff regularization. Using exact solutions for de Sitter space-time, we show that in a certain range of mass and renormalization scales there is a contribution to the vacuum energy density that scales as nonrelativistic matter and that such a contribution becomes dominant at late times. By means of the WKB approximation, we find that these results can be extended to arbitrary Robertson-Walker geometries. We study the range of parameters in which the vacuum energy density would be compatible with current limits on dark matter abundance. Finally, by calculating the vacuum energy in a perturbed Robertson-Walker background, we obtain the speed of sound of density perturbations and show that the vacuum energy density contrast can grow on sub-Hubble scales as in standard cold dark matter scenarios.

  7. Vacuum energy as dark matter

    CERN Document Server

    Albareti, F D; Maroto, A L

    2014-01-01

    We consider the vacuum energy of massive quantum fields in an expanding universe. We define a conserved renormalized energy-momentum tensor by means of a comoving cutoff regularization. Using exact solutions for de Sitter space-time, we show that in a certain range of mass and renormalization scales there is a contribution to the vacuum energy density that scales as non-relativistic matter and that such a contribution becomes dominant at late times. By means of the WKB approximation, we find that these results can be extended to arbitrary Robertson-Walker geometries. We study the range of parameters in which the vacuum energy density would be compatible with current limits on dark matter abundance. Finally, by calculating the vacuum energy in a perturbed Robertson-Walker background, we obtain the speed of sound of density perturbations and show that the vacuum energy density contrast can grow on sub-Hubble scales as in standard cold dark matter scenarios.

  8. Vacuum Energy and Its Consequences

    Science.gov (United States)

    Hewett, Lionel

    2009-10-01

    Intuitively one would think that a perfect vacuum should contain no energy. However, quantum mechanics asserts that virtual particles popping in and out of existence too fast to be observed directly should produce a non-zero average energy density for empty space. This presentation discusses how quantum mechanics predicts too large a value for this energy density, how the Casimir effect correctly predicts the measured value of the vacuum energy between closely spaced objects, how time-symmetric cosmology predicts the energy density of interstellar space, how vacuum energy produces negative pressure, how vacuum energy causes the current universe to accelerate its expansion, and why vacuum energy cannot be tapped so as to produce an inexhaustible source of energy for all mankind.

  9. Comparison of targeted next-generation sequencing (NGS) and real-time PCR in the detection of EGFR, KRAS, and BRAF mutations on formalin-fixed, paraffin-embedded tumor material of non-small cell lung carcinoma-superiority of NGS.

    Science.gov (United States)

    Tuononen, Katja; Mäki-Nevala, Satu; Sarhadi, Virinder Kaur; Wirtanen, Aino; Rönty, Mikko; Salmenkivi, Kaisa; Andrews, Jenny M; Telaranta-Keerie, Aino I; Hannula, Sari; Lagström, Sonja; Ellonen, Pekka; Knuuttila, Aija; Knuutila, Sakari

    2013-05-01

    The development of tyrosine kinase inhibitor treatments has made it important to test cancer patients for clinically significant gene mutations that influence the benefit of treatment. Targeted next-generation sequencing (NGS) provides a promising method for diagnostic purposes by enabling the simultaneous detection of multiple mutations in various genes in a single test. The aim of our study was to screen EGFR, KRAS, and BRAF mutations by targeted NGS and commonly used real-time polymerase chain reaction (PCR) methods to evaluate the feasibility of targeted NGS for the detection of the mutations. Furthermore, we aimed to identify potential novel mutations by targeted NGS. We analyzed formalin-fixed, paraffin-embedded (FFPE) tumor tissue specimens from 81 non-small cell lung carcinoma patients. We observed a significant concordance (from 96.3 to 100%) of the EGFR, KRAS, and BRAF mutation detection results between targeted NGS and real-time PCR. Moreover, targeted NGS revealed seven nonsynonymous single-nucleotide variations and one insertion-deletion variation in EGFR not detectable by the real-time PCR methods. The potential clinical significance of these variants requires elucidation in future studies. Our results support the use of targeted NGS in the screening of EGFR, KRAS, and BRAF mutations in FFPE tissue material.

  10. Vacuum fiber-fiber coupler

    Science.gov (United States)

    Heinrici, Axel; Bjelajac, Goran; Jonkers, Jeroen; Jakobs, Stefan; Olschok, Simon; Reisgen, Uwe

    2017-02-01

    Research and development carried out by the ISF Welding and Joining Institute of RWTH Aachen University has proven that combining high power laser and low vacuum atmosphere provides a welding performance and quality, which is comparable to electron beam welding. The developed welding machines are still using a beam forming which takes place outside the vacuum and the focusing laser beam has to be introduced to the vacuum via a suitable window. This inflexible design spoils much of the flexibility of modern laser welding. With the target to bring a compact, lightweight flying optics with flexible laser transport fibers into vacuum chambers, a high power fiber-fiber coupler has been adapted by II-VI HIGHYAG that includes a reliable vacuum interface. The vacuum-fiber-fiber coupler (V-FFC) is tested with up to 16 kW sustained laser power and the design is flexible in terms of a wide variety of laser fiber plug systems and vacuum flanges. All that is needed to implement the V-FFC towards an existing or planned vacuum chamber is an aperture of at least 100 mm (4 inch) diameter with any type of vacuum or pressure flange. The V-FFC has a state-of-the-art safety interface which allows for fast fiber breakage detection for both fibers (as supported by fibers) by electric wire breakage and short circuit detection. Moreover, the System also provides connectors for cooling and electric signals for the laser beam optics inside the vacuum. The V-FFC has all necessary adjustment options for coupling the laser radiation to the receiving fiber.

  11. 49 CFR 570.56 - Vacuum brake assist unit and vacuum brake system.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 6 2010-10-01 2010-10-01 false Vacuum brake assist unit and vacuum brake system... Vehicles With GVWR of More Than 10,000 Pounds § 570.56 Vacuum brake assist unit and vacuum brake system. The following requirements apply to vehicles with vacuum brake assist units and vacuum brake systems...

  12. Vacuum Brazing of Accelerator Components

    Science.gov (United States)

    Singh, Rajvir; Pant, K. K.; Lal, Shankar; Yadav, D. P.; Garg, S. R.; Raghuvanshi, V. K.; Mundra, G.

    2012-11-01

    Commonly used materials for accelerator components are those which are vacuum compatible and thermally conductive. Stainless steel, aluminum and copper are common among them. Stainless steel is a poor heat conductor and not very common in use where good thermal conductivity is required. Aluminum and copper and their alloys meet the above requirements and are frequently used for the above purpose. The accelerator components made of aluminum and its alloys using welding process have become a common practice now a days. It is mandatory to use copper and its other grades in RF devices required for accelerators. Beam line and Front End components of the accelerators are fabricated from stainless steel and OFHC copper. Fabrication of components made of copper using welding process is very difficult and in most of the cases it is impossible. Fabrication and joining in such cases is possible using brazing process especially under vacuum and inert gas atmosphere. Several accelerator components have been vacuum brazed for Indus projects at Raja Ramanna Centre for Advanced Technology (RRCAT), Indore using vacuum brazing facility available at RRCAT, Indore. This paper presents details regarding development of the above mentioned high value and strategic components/assemblies. It will include basics required for vacuum brazing, details of vacuum brazing facility, joint design, fixturing of the jobs, selection of filler alloys, optimization of brazing parameters so as to obtain high quality brazed joints, brief description of vacuum brazed accelerator components etc.

  13. NCSX Vacuum Vessel Fabrication

    Energy Technology Data Exchange (ETDEWEB)

    Viola, M. E.; Brown, T.; Heitzenroeder, P.; Malinowski, F.; Reiersen, W.; Sutton, L.; Goranson, P.; Nelson, B.; Cole, M.; Manuel, M.; McCorkle, D.

    2005-10-07

    The National Compact Stellarator Experiment (NCSX) is being constructed at the Princeton Plasma Physics Laboratory (PPPL) in conjunction with the Oak Ridge National Laboratory (ORNL). The goal of this experiment is to develop a device which has the steady state properties of a traditional stellarator along with the high performance characteristics of a tokamak. A key element of this device is its highly shaped Inconel 625 vacuum vessel. This paper describes the manufacturing of the vessel. The vessel is being fabricated by Major Tool and Machine, Inc. (MTM) in three identical 120º vessel segments, corresponding to the three NCSX field periods, in order to accommodate assembly of the device. The port extensions are welded on, leak checked, cut off within 1" of the vessel surface at MTM and then reattached at PPPL, to accommodate assembly of the close-fitting modular coils that surround the vessel. The 120º vessel segments are formed by welding two 60º segments together. Each 60º segment is fabricated by welding ten press-formed panels together over a collapsible welding fixture which is needed to precisely position the panels. The vessel is joined at assembly by welding via custom machined 8" (20.3 cm) wide spacer "spool pieces." The vessel must have a total leak rate less than 5 X 10-6 t-l/s, magnetic permeability less than 1.02μ, and its contours must be within 0.188" (4.76 mm). It is scheduled for completion in January 2006.

  14. HIGH TEMPERATURE VACUUM MIXER

    Directory of Open Access Journals (Sweden)

    E. D. Chertov

    2015-01-01

    Full Text Available The work is devoted to the creation of a new type of mixer to produce homogeneous mixtures of dissimilar materials applied to recycling of housing and communal services waste. The article describes the design of a dual-chamber device of the original high-temperature vacuum mixer, there investigated the processes occurring in the chambers of such devices. The results of theoretical and experimental research of the process of mixing recycled polyethylene with a mixture of "grinded food waste – Eco wool” are presented. The problem of the optimum choice of bending the curvilinear blades in the working volume of the seal, which is achieved by setting their profile in the form of involute arc of several circles of different radii, is examined . The dependences, allowing to define the limits of the changes of the main mode parameters the angular velocity of rotation of the working body of the mixer using two ways of setting the profile of the curvilinear blade mixer are obtained. Represented design of the mixer is proposed to use for a wide range of tasks associated with the mixing of the components with a strongly pronounced difference of physic al chemical properties and, in particular, in the production of composites out of housing and communal services waste.

  15. Vacuum plasma spray coating

    Science.gov (United States)

    Holmes, Richard R.; Mckechnie, Timothy N.

    1989-01-01

    Currently, protective plasma spray coatings are applied to space shuttle main engine turbine blades of high-performance nickel alloys by an air plasma spray process. Originally, a ceramic coating of yttria-stabilized zirconia (ZrO2.12Y2O3) was applied for thermal protection, but was removed because of severe spalling. In vacuum plasma spray coating, plasma coatings of nickel-chromium-aluminum-yttrium (NiCrAlY) are applied in a reduced atmosphere of argon/helium. These enhanced coatings showed no spalling after 40 MSFC burner rig thermal shock cycles between 927 C (1700 F) and -253 C (-423 F), while current coatings spalled during 5 to 25 test cycles. Subsequently, a process was developed for applying a durable thermal barrier coating of ZrO2.8Y2O3 to the turbine blades of first-stage high-pressure fuel turbopumps utilizing the enhanced NiCrAlY bond-coating process. NiCrAlY bond coating is applied first, with ZrO2.8Y2O3 added sequentially in increasing amounts until a thermal barrier coating is obtained. The enchanced thermal barrier coating has successfully passed 40 burner rig thermal shock cycles.

  16. HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma.

    Science.gov (United States)

    Qiu, Ping; Stevens, Richard; Wei, Bo; Lahser, Fred; Howe, Anita Y M; Klappenbach, Joel A; Marton, Matthew J

    2015-01-01

    Genotyping of hepatitis C virus (HCV) plays an important role in the treatment of HCV. As new genotype-specific treatment options become available, it has become increasingly important to have accurate HCV genotype and subtype information to ensure that the most appropriate treatment regimen is selected. Most current genotyping methods are unable to detect mixed genotypes from two or more HCV infections. Next generation sequencing (NGS) allows for rapid and low cost mass sequencing of viral genomes and provides an opportunity to probe the viral population from a single host. In this paper, the possibility of using short NGS reads for direct HCV genotyping without genome assembly was evaluated. We surveyed the publicly-available genetic content of three HCV drug target regions (NS3, NS5A, NS5B) in terms of whether these genes contained genotype-specific regions that could predict genotype. Six genotypes and 38 subtypes were included in this study. An automated phylogenetic analysis based HCV genotyping method was implemented and used to assess different HCV target gene regions. Candidate regions of 250-bp each were found for all three genes that have enough genetic information to predict HCV genotypes/subtypes. Validation using public datasets shows 100% genotyping accuracy. To test whether these 250-bp regions were sufficient to identify mixed genotypes, we developed a random primer-based method to sequence HCV plasma samples containing mixtures of two HCV genotypes in different ratios. We were able to determine the genotypes without ambiguity and to quantify the ratio of the abundances of the mixed genotypes in the samples. These data provide a proof-of-concept that this random primed, NGS-based short-read genotyping approach does not need prior information about the viral population and is capable of detecting mixed viral infection.

  17. HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma.

    Directory of Open Access Journals (Sweden)

    Ping Qiu

    Full Text Available Genotyping of hepatitis C virus (HCV plays an important role in the treatment of HCV. As new genotype-specific treatment options become available, it has become increasingly important to have accurate HCV genotype and subtype information to ensure that the most appropriate treatment regimen is selected. Most current genotyping methods are unable to detect mixed genotypes from two or more HCV infections. Next generation sequencing (NGS allows for rapid and low cost mass sequencing of viral genomes and provides an opportunity to probe the viral population from a single host. In this paper, the possibility of using short NGS reads for direct HCV genotyping without genome assembly was evaluated. We surveyed the publicly-available genetic content of three HCV drug target regions (NS3, NS5A, NS5B in terms of whether these genes contained genotype-specific regions that could predict genotype. Six genotypes and 38 subtypes were included in this study. An automated phylogenetic analysis based HCV genotyping method was implemented and used to assess different HCV target gene regions. Candidate regions of 250-bp each were found for all three genes that have enough genetic information to predict HCV genotypes/subtypes. Validation using public datasets shows 100% genotyping accuracy. To test whether these 250-bp regions were sufficient to identify mixed genotypes, we developed a random primer-based method to sequence HCV plasma samples containing mixtures of two HCV genotypes in different ratios. We were able to determine the genotypes without ambiguity and to quantify the ratio of the abundances of the mixed genotypes in the samples. These data provide a proof-of-concept that this random primed, NGS-based short-read genotyping approach does not need prior information about the viral population and is capable of detecting mixed viral infection.

  18. The vacuum universe the vacuum deposit and the dimensional hierarchy

    CERN Document Server

    Chung Ding Yu

    2001-01-01

    In this paper, it is proposed that the universe not only gains its existence from the vacuum but also fattens itself with the vacuum. It is the vacuum universe. The vacuum is deposited in the inflationary universe before the inflation. During the inflation, the deposited vacuum is spent to acquire space. In terms of elementary particles, the deposited vacuum is spent to dilute (fractionalize) the primordial high mass mixed 9-branes to form the low mass hierarchical mixed branes from 9 to 3 whose masses decrease with the space-time dimension numbers. This formation of the hierarchical mixed branes is followed by the internal empty space formation. The internal empty space is generate internally by the annihilation of some of the mixed branes through charge symmetry. The energy released is cosmic radiation. The inflationary emergence of the hierarchical mixed branes and the non-inflationary emergence of cosmic radiation after the inflation constitute the hybrid inflation. The mixed 3-brane is the mixture of lep...

  19. Quantum Electrodynamics vacuum polarization solver

    CERN Document Server

    Carneiro, Pedro; Fonseca, Ricardo; Silva, Luís

    2016-01-01

    The self-consistent modeling of vacuum polarization due to virtual electron-positron fluctuations is of relevance for many near term experiments associated with high intensity radiation sources and represents a milestone in describing scenarios of extreme energy density. We present a generalized finite-difference time-domain solver that can incorporate the modifications to Maxwells equations due to virtual vacuum polarization. Our multidimensional solver reproduced in one dimensional configurations the results for which an analytic treatment is possible, yielding vacuum harmonic generation and birefringence. The solver has also been tested for two-dimensional scenarios where finite laser beam spot sizes must be taken into account. We employ this solver to explore different types of counter-propagating configurations that can be relevant for future planned experiments aiming to detect quantum vacuum dynamics at ultra-high electromagnetic field intensities.

  20. SILICON REFINING BY VACUUM TREATMENT

    Directory of Open Access Journals (Sweden)

    André Alexandrino Lotto

    2014-12-01

    Full Text Available This work aims to investigate the phosphorus removal by vacuum from metallurgical grade silicon (MGSi (98.5% to 99% Si. Melting experiments were carried out in a vacuum induction furnace, varying parameters such as temperature, time and relation area exposed to the vacuum / volume of molten silicon. The results of chemical analysis were obtained by inductively coupled plasma (ICP, and evaluated based on thermodynamic and kinetic aspects of the reaction of vaporization of the phosphorus in the silicon. The phosphorus was decreased from 33 to approximately 1.5 ppm after three hours of vacuum treatment, concluding that the evaporation step is the controlling step of the process for parameters of temperature, pressure and agitation used and refining by this process is technically feasible.

  1. Inhomogeneous and interacting vacuum energy

    CERN Document Server

    De-Santiago, Josue; Wang, Yuting

    2012-01-01

    Vacuum energy is a simple model for dark energy driving an accelerated expansion of the universe. If the vacuum energy is inhomogeneous in spacetime then it must be interacting. We present the general equations for a spacetime-dependent vacuum energy in cosmology, including inhomogeneous perturbations. We show how any dark energy cosmology can be described by an interacting vacuum+matter. Different models for the interaction can lead to different behaviour (e.g., sound speed for dark energy perturbations) and hence could be distinguished by cosmological observations. As an example we present the cosmic microwave microwave background anisotropies and the matter power spectrum for two different versions of a generalised Chaplygin gas cosmology.

  2. APS storage ring vacuum system

    Energy Technology Data Exchange (ETDEWEB)

    Niemann, R.C.; Benaroya, R.; Choi, M.; Dortwegt, R.J.; Goeppner, G.A.; Gonczy, J.; Krieger, C.; Howell, J.; Nielsen, R.W.; Roop, B.; Wehrle, R.B.

    1990-01-01

    The Advanced Photon Source synchrotron radiation facility, under construction at the Argonne National Laboratory, incorporates a large ring for the storage of 7 GeV positrons for the generation of photon beams for the facility's experimental program. The Storage Ring's 1104 m circumference is divided into 40 functional sectors. The sectors include vacuum, beam transport, control, acceleration and insertion device components. The vacuum system, which is designed to operate at a pressure of 1 n Torr, consists of 240 connected sections, the majority of which are fabricated from an aluminum alloy extrusion. The sections are equipped with distributed NeG pumping, photon absorbers with lumped pumping, beam position monitors, vacuum diagnostics and valving. The details of the vacuum system design, selected results of the development program and general construction plans are presented. 11 refs., 6 figs., 3 tabs.

  3. Vacuum production; Produccion de vacio

    Energy Technology Data Exchange (ETDEWEB)

    Segovia, J. L. de

    2010-07-01

    Since the advent of ultra high vacuum in 1958 has been a great demand for new as means of production and to meet the process needs to be done: industry heavy, high technology and space research areas, large accelerator systems particles or nuclear fusion. In this paper we explore the modern media production: dry vacuum pumps, turbo pumps, pump status diffusion ion pumps and cryopumps. (Author)

  4. Decoherence delays false vacuum decay

    OpenAIRE

    Bachlechner, Thomas C.

    2012-01-01

    We show that gravitational interactions between massless thermal modes and a nucleating Coleman-de Luccia bubble may lead to efficient decoherence and strongly suppress metastable vacuum decay for bubbles that are small compared to the Hubble radius. The vacuum decay rate including gravity and thermal photon interactions has the exponential scaling $\\Gamma\\sim\\Gamma_{CDL}^{2}$, where $\\Gamma_{CDL}$ is the Coleman-de Luccia decay rate neglecting photon interactions. For the lowest metastable i...

  5. ITER diagnostic system: Vacuum interface

    Energy Technology Data Exchange (ETDEWEB)

    Patel, K.M., E-mail: Kaushal.Patel@iter.org [ITER Organization, Route de Vinon sur Verdon, 13115 St Paul-Lez-Durance (France); Udintsev, V.S.; Hughes, S.; Walker, C.I.; Andrew, P.; Barnsley, R.; Bertalot, L. [ITER Organization, Route de Vinon sur Verdon, 13115 St Paul-Lez-Durance (France); Drevon, J.M. [Bertin Technologies, BP 22, 13762 Aix-en Provence cedex 3 (France); Encheva, A. [ITER Organization, Route de Vinon sur Verdon, 13115 St Paul-Lez-Durance (France); Kashchuk, Y. [Institution “PROJECT CENTER ITER”, 1, Akademika Kurchatova pl., Moscow (Russian Federation); Maquet, Ph. [Bertin Technologies, BP 22, 13762 Aix-en Provence cedex 3 (France); Pearce, R.; Taylor, N.; Vayakis, G.; Walsh, M.J. [ITER Organization, Route de Vinon sur Verdon, 13115 St Paul-Lez-Durance (France)

    2013-10-15

    Diagnostics play an essential role for the successful operation of the ITER tokamak. They provide the means to observe control and to measure plasma during the operation of ITER tokamak. The components of the diagnostic system in the ITER tokamak will be installed in the vacuum vessel, in the cryostat, in the upper, equatorial and divertor ports, in the divertor cassettes and racks, as well as in various buildings. Diagnostic components that are placed in a high radiation environment are expected to operate for the life of ITER. There are approx. 45 diagnostic systems located on ITER. Some diagnostics incorporate direct or independently pumped extensions to maintain their necessary vacuum conditions. They require a base pressure less than 10{sup −7} Pa, irrespective of plasma operation, and a leak rate of less than 10{sup −10} Pa m{sup 3} s{sup −1}. In all the cases it is essential to maintain the ITER closed fuel cycle. These directly coupled diagnostic systems are an integral part of the ITER vacuum containment and are therefore subject to the same design requirements for tritium and active gas confinement, for all normal and accidental conditions. All the diagnostics, whether or not pumped, incorporate penetration of the vacuum boundary (i.e. window assembly, vacuum feedthrough etc.) and demountable joints. Monitored guard volumes are provided for all elements of the vacuum boundary that are judged to be vulnerable by virtue of their construction, material, load specification etc. Standard arrangements are made for their construction and for the monitoring, evacuating and leak testing of these volumes. Diagnostic systems are incorporated at more than 20 ports on ITER. This paper will describe typical and particular arrangements of pumped diagnostic and monitored guard volume. The status of the diagnostic vacuum systems, which are at the start of their detailed design, will be outlined and the specific features of the vacuum systems in ports and extensions

  6. Vacuum Frying: A nutritional approach

    OpenAIRE

    Manuel Coronel

    2014-01-01

    (Received: 2014/08/07 - Accepted: 2014/09/22)One of the largest areas of the food industry is the production of snacks, but these have generally an inadequate nutritional profile in healthy eating. The vacuum frying technology is presented as a clear option processing for the development of new products and existing ones. This review article presents the advantages of using technology in Vacuum frying different types of food, especially in relation to the contents of some micronutrients and f...

  7. Introduction of the Python script STRinNGS for analysis of STR regions in FASTQ or BAM files and expansion of the Danish STR sequence database to 11 STRs

    DEFF Research Database (Denmark)

    Friis, Susanne L; Buchard, Anders; Rockenbauer, Eszter

    2016-01-01

    This work introduces the in-house developed Python application STRinNGS for analysis of STR sequence elements in BAM or FASTQ files. STRinNGS identifies sequence reads with STR loci by their flanking sequences, it analyses the STR sequence and the flanking regions, and generates a report with the......This work introduces the in-house developed Python application STRinNGS for analysis of STR sequence elements in BAM or FASTQ files. STRinNGS identifies sequence reads with STR loci by their flanking sequences, it analyses the STR sequence and the flanking regions, and generates a report...

  8. Vacuum-assisted cesarean section

    Directory of Open Access Journals (Sweden)

    McQuivey RW

    2017-03-01

    Full Text Available Ross W McQuivey,1 Jon E Block2 1Clinical Innovations, Salt Lake City, UT, 2Independent consultant, San Francisco, CA, USA Abstract: There has been a dramatic rise in the frequency of cesarean sections, surpassing 30% of all deliveries in the US. This upsurge, coupled with a decreasing willingness to allow vaginal birth after cesarean section, has resulted in an expansion of the use of vacuum assistance to safely extract the fetal head. By avoiding the use of a delivering hand or forceps blade, the volume being delivered through the uterine incision can be decreased when the vacuum is used properly. Reducing uterine extensions with their associated complications (eg, excessive blood loss in difficult cases is also a theoretical advantage of vacuum delivery. Maternal discomfort related to excessive fundal pressure may also be lessened. To minimize the risk of neonatal morbidity, proper cup placement over the “flexion point” remains essential to maintain vacuum integrity and reduce the chance of inadvertent detachment and uterine extensions. Based on the published literature and pragmatic clinical experience, utilization of the vacuum device is a safe and effective technique to assist delivery during cesarean section. Keywords: cesarean section, vacuum, forceps, birth, delivery

  9. Edge conduction in vacuum glazing

    Energy Technology Data Exchange (ETDEWEB)

    Simko, T.M.; Collins, R.E. [Sydney Univ., NSW (Australia). Dept. of Applied Physics; Beck, F.A.; Arasteh, D. [Lawrence Berkeley Lab., CA (United States)

    1995-03-01

    Vacuum glazing is a form of low-conductance double glazing using in internal vacuum between the two glass sheets to eliminate heat transport by gas conduction and convection. An array of small support pillars separates the sheets; fused solder glass forms the edge seal. Heat transfer through the glazing occurs by radiation across the vacuum gap, conduction through the support pillars, and conduction through the bonded edge seal. Edge conduction is problematic because it affects stresses in the edge region, leading to possible failure of the glazing; in addition, excessive heat transfer because of thermal bridging in the edge region can lower overall window thermal performance and decrease resistance to condensation. Infrared thermography was used to analyze the thermal performance of prototype vacuum glazings, and, for comparison, atmospheric pressure superwindows. Research focused on mitigating the edge effects of vacuum glazings through the use of insulating trim, recessed edges, and framing materials. Experimentally validated finite-element and finite-difference modeling tools were used for thermal analysis of prototype vacuum glazing units and complete windows. Experimental measurements of edge conduction using infrared imaging were found to be in good agreement with finite-element modeling results for a given set of conditions. Finite-element modeling validates an analytic model developed for edge conduction.

  10. Technical specification for vacuum systems

    Energy Technology Data Exchange (ETDEWEB)

    Khaw, J. (ed.)

    1987-01-01

    The vacuum systems at the Stanford Linear Accelerator Center (SLAC) are primarily of all-metal construction and operate at pressures from 10/sup -5/ to 10/sup -11/ Torr. The primary gas loads during operation result from thermal desorption and beam-induced desorption from the vacuum chamber walls. These desorption rates can be extremely high in the case of hydrocarbons and other contaminants. These specifications place a major emphasis on eliminating contamination sources. The specifications and procedures have been written to insure the cleanliness and vacuum integrity of all SLAC vacuum systems, and to assist personnel involved with SLAC vacuum systems in choosing and designing components that are compatible with existing systems and meet the quality and reliability of SLAC vacuum standards. The specification includes requirements on design, procurement, fabrication, chemical cleaning, clean room practices, welding and brazing, helium leak testing, residual gas analyzer testing, bakeout, venting, and pumpdown. Also appended are specifications regarding acceptable vendors, isopropyl alcohol, bakeable valve cleaning procedure, mechanical engineering safety inspection, notes on synchrotron radiation, and specifications of numerous individual components. (LEW)

  11. Using GC-FID to Quantify the Removal of 4-sec-Butylphenol from NGS Solvent by NaOH

    Energy Technology Data Exchange (ETDEWEB)

    Sloop, Jr., Frederick V. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Moyer, Bruce A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2014-12-01

    A caustic wash of the solvent used in the Next-Generation Caustic-Side Solvent Extraction (NG-CSSX) process was found to remove the modifier breakdown product 4-sec-butylphenol (SBP) with varying efficiency depending on the aqueous NaOH concentration. Recent efforts at ORNL have aimed at characterizing the flowsheet chemistry and reducing the technical uncertainties of the NG-CSSX process. One technical uncertainty has been the efficacy of caustic washing of the solvent for the removal of lipophilic anions, in particular, the efficient removal of SBP, an important degradation product of the solvent modifier, Cs-7SB. In order to make this determination, it was necessary to develop a sensitive and reliable analytical technique for the detection and quantitation of SBP. This report recounts the development of a GC-FID-based (Gas Chromatography Flame Ionization Detection) technique for analyzing SBP and the utilization of the technique to subsequently confirm the ability of the caustic wash to efficiently remove SBP from the Next Generation Solvent (NGS) used in NG-CSSX. In particular, the developed technique was used to monitor the amount of SBP removed from a simple solvent and the full NGS by contact with sodium hydroxide wash solutions over a range of concentrations. The results show that caustic washing removes SBP with effectively the same efficiency as it did in the original Caustic-Side Solvent Extraction (CSSX) process.

  12. NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

    Science.gov (United States)

    Katta, Mohan A. V. S. K.; Khan, Aamir W.; Doddamani, Dadakhalandar; Thudi, Mahendar; Varshney, Rajeev K.

    2015-01-01

    Rapid popularity and adaptation of next generation sequencing (NGS) approaches have generated huge volumes of data. High throughput platforms like Illumina HiSeq produce terabytes of raw data that requires quick processing. Quality control of the data is an important component prior to the downstream analyses. To address these issues, we have developed a quality control pipeline, NGS-QCbox that scales up to process hundreds or thousands of samples. Raspberry is an in-house tool, developed in C language utilizing HTSlib (v1.2.1) (http://htslib.org), for computing read/base level statistics. It can be used as stand-alone application and can process both compressed and uncompressed FASTQ format files. NGS-QCbox integrates Raspberry with other open-source tools for alignment (Bowtie2), SNP calling (SAMtools) and other utilities (bedtools) towards analyzing raw NGS data at higher efficiency and in high-throughput manner. The pipeline implements batch processing of jobs using Bpipe (https://github.com/ssadedin/bpipe) in parallel and internally, a fine grained task parallelization utilizing OpenMP. It reports read and base statistics along with genome coverage and variants in a user friendly format. The pipeline developed presents a simple menu driven interface and can be used in either quick or complete mode. In addition, the pipeline in quick mode outperforms in speed against other similar existing QC pipeline/tools. The NGS-QCbox pipeline, Raspberry tool and associated scripts are made available at the URL https://github.com/CEG-ICRISAT/NGS-QCbox and https://github.com/CEG-ICRISAT/Raspberry for rapid quality control analysis of large-scale next generation sequencing (Illumina) data. PMID:26460497

  13. NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data.

    Science.gov (United States)

    Katta, Mohan A V S K; Khan, Aamir W; Doddamani, Dadakhalandar; Thudi, Mahendar; Varshney, Rajeev K

    2015-01-01

    Rapid popularity and adaptation of next generation sequencing (NGS) approaches have generated huge volumes of data. High throughput platforms like Illumina HiSeq produce terabytes of raw data that requires quick processing. Quality control of the data is an important component prior to the downstream analyses. To address these issues, we have developed a quality control pipeline, NGS-QCbox that scales up to process hundreds or thousands of samples. Raspberry is an in-house tool, developed in C language utilizing HTSlib (v1.2.1) (http://htslib.org), for computing read/base level statistics. It can be used as stand-alone application and can process both compressed and uncompressed FASTQ format files. NGS-QCbox integrates Raspberry with other open-source tools for alignment (Bowtie2), SNP calling (SAMtools) and other utilities (bedtools) towards analyzing raw NGS data at higher efficiency and in high-throughput manner. The pipeline implements batch processing of jobs using Bpipe (https://github.com/ssadedin/bpipe) in parallel and internally, a fine grained task parallelization utilizing OpenMP. It reports read and base statistics along with genome coverage and variants in a user friendly format. The pipeline developed presents a simple menu driven interface and can be used in either quick or complete mode. In addition, the pipeline in quick mode outperforms in speed against other similar existing QC pipeline/tools. The NGS-QCbox pipeline, Raspberry tool and associated scripts are made available at the URL https://github.com/CEG-ICRISAT/NGS-QCbox and https://github.com/CEG-ICRISAT/Raspberry for rapid quality control analysis of large-scale next generation sequencing (Illumina) data.

  14. NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina Data.

    Directory of Open Access Journals (Sweden)

    Mohan A V S K Katta

    Full Text Available Rapid popularity and adaptation of next generation sequencing (NGS approaches have generated huge volumes of data. High throughput platforms like Illumina HiSeq produce terabytes of raw data that requires quick processing. Quality control of the data is an important component prior to the downstream analyses. To address these issues, we have developed a quality control pipeline, NGS-QCbox that scales up to process hundreds or thousands of samples. Raspberry is an in-house tool, developed in C language utilizing HTSlib (v1.2.1 (http://htslib.org, for computing read/base level statistics. It can be used as stand-alone application and can process both compressed and uncompressed FASTQ format files. NGS-QCbox integrates Raspberry with other open-source tools for alignment (Bowtie2, SNP calling (SAMtools and other utilities (bedtools towards analyzing raw NGS data at higher efficiency and in high-throughput manner. The pipeline implements batch processing of jobs using Bpipe (https://github.com/ssadedin/bpipe in parallel and internally, a fine grained task parallelization utilizing OpenMP. It reports read and base statistics along with genome coverage and variants in a user friendly format. The pipeline developed presents a simple menu driven interface and can be used in either quick or complete mode. In addition, the pipeline in quick mode outperforms in speed against other similar existing QC pipeline/tools. The NGS-QCbox pipeline, Raspberry tool and associated scripts are made available at the URL https://github.com/CEG-ICRISAT/NGS-QCbox and https://github.com/CEG-ICRISAT/Raspberry for rapid quality control analysis of large-scale next generation sequencing (Illumina data.

  15. RFQ Vacuum brazing at CERN

    CERN Document Server

    Mathot, S

    2008-01-01

    The aim of this paper is to describe the vacuum brazing procedure used at CERN for the brazing of Radio Frequency Quadrupole (RFQ). The RFQ is made of high precision machined OFE copper pieces assembled together. Vacuum brazing is one of the most promising techniques used to join the individual components leading to vacuum tightness and high precision alignment. The RFQ modules brazed at CERN are made of four 100 or 120 cm long vanes (two major and two minor vanes). Our brazing procedure consists of two steps. The first step involves the brazing of the four vanes in a horizontal position. The second step consists of brazing the vacuum stainless steel flanges to the copper structure in a vertical position. The paper describes the problems encountered with the alignment and the vacuum tightness. The difficulties related to the stress relaxation of the machined copper pieces during the brazing heat treatment are discussed. In addition, the solutions developed to improve the alignment of the brazed RFQ’s are...

  16. The Light-Front Vacuum

    CERN Document Server

    Herrmann, Marc

    2015-01-01

    Background: The vacuum in the light-front representation of quantum field theory is trivial while vacuum in the equivalent canonical representation of the same theory is non-trivial. Purpose: Understand the relation between the vacuum in light-front and canonical representations of quantum field theory and the role of zero-modes in this relation. Method: Vacuua are defined as linear functionals on an algebra of field operators. The role of the algebra in the definition of the vacuum is exploited to understand this relation. Results: The vacuum functional can be extended from the light-front Fock algebra to an algebra of local observables. The extension to the algebra of local observables is responsible for the inequivalence. The extension defines a unitary mapping between the physical representation of the local algebra and a sub-algebra of the light-front Fock algebra. Conclusion: There is a unitary mapping from the physical representation of the algebra of local observables to a sub-algebra of the light-fro...

  17. Microscale Digital Vacuum Electronic Gates

    Science.gov (United States)

    Manohara, Harish (Inventor); Mojarradi, Mohammed M. (Inventor)

    2014-01-01

    Systems and methods in accordance with embodiments of the invention implement microscale digital vacuum electronic gates. In one embodiment, a microscale digital vacuum electronic gate includes: a microscale field emitter that can emit electrons and that is a microscale cathode; and a microscale anode; where the microscale field emitter and the microscale anode are disposed within at least a partial vacuum; where the microscale field emitter and the microscale anode are separated by a gap; and where the potential difference between the microscale field emitter and the microscale anode is controllable such that the flow of electrons between the microscale field emitter and the microscale anode is thereby controllable; where when the microscale anode receives a flow of electrons, a first logic state is defined; and where when the microscale anode does not receive a flow of electrons, a second logic state is defined.

  18. Impedances of Laminated Vacuum Chambers

    Energy Technology Data Exchange (ETDEWEB)

    Burov, A.; Lebedev, V.; /Fermilab

    2011-06-22

    First publications on impedance of laminated vacuum chambers are related to early 70s: those are of S. C. Snowdon [1] and of A. G. Ruggiero [2]; fifteen years later, a revision paper of R. Gluckstern appeared [3]. All the publications were presented as Fermilab preprints, and there is no surprise in that: the Fermilab Booster has its laminated magnets open to the beam. Being in a reasonable mutual agreement, these publications were all devoted to the longitudinal impedance of round vacuum chambers. The transverse impedance and the flat geometry case were addressed in more recent paper of K. Y. Ng [4]. The latest calculations of A. Macridin et al. [5] revealed some disagreement with Ref. [4]; this fact stimulated us to get our own results on that matter. Longitudinal and transverse impendances are derived for round and flat laminated vacuum chambers. Results of this paper agree with Ref. [5].

  19. Particle description of zero energy vacuum; 2, Basic vacuum systems

    CERN Document Server

    Grandpeix, J Y

    2002-01-01

    We describe vacuum as a system of virtual particles, some of which have negative energies. Any system of vacuum particles is a part of a keneme, i.e. of a system of n particles which can, without violating the conservation laws, annihilate in the strict sense of the word (transform into nothing). A keneme is a homogeneous system, i.e. its state is invariant by all transformations of the invariance group. But a homogeneous system is not necessarily a keneme. In the simple case of a spin system, where the invariance group is SU(2), a homogeneous system is a system whose total spin is unpolarized; a keneme is a system whose total spin is zero. The state of a homogeneous system is described by a statistical operator with infinite trace (von Neumann), to which corresponds a characteristic distribution. The characteristic distributions of the homogeneous systems of vacuum are defined and studied. Finally it is shown how this description of vacuum can be used to solve the frame problem posed in (I).

  20. Grid平台上的NGS编译技术%The Compiler Technology of NGS on the Grid

    Institute of Scientific and Technical Information of China (English)

    丛杨; 王雷; 朱凯佳; 刘又诚

    2003-01-01

    随着网络技术的发展,在异构平台上使用共同的计算和信息资源将很快成为可能.Grid(网格)就是这样一种提供资源共享的新兴平台,而在其之上的下一代软件程序(NGS)则对编译器提出了新的挑战[1].未来Grid平台上的编译系统将是能够进行动态编译和优化,根据实时系统以及网络的性能不断进行自我调整的软件模型,同时它还能为具有自适应性的应用程序提供编译支持.

  1. NGS metabarcoding proves successful for quantitative assessment of symbiont abundance: the case of feather mites on birds.

    Science.gov (United States)

    Diaz-Real, J; Serrano, D; Piriz, A; Jovani, R

    2015-10-01

    Understanding the ecological function of species and the structure of communities is crucial in the study of ecological interactions among species. For this purpose, not only the occurrence of particular species but also their abundance in ecological communities is required. However, abundance quantification of species through morphological characters is often difficult or time/money consuming when dealing with elusive or small taxa. Here we tested the use of next-generation sequencing (NGS) for abundance estimation of two species of feather mites (Proctophyllodes stylifer and Pteronyssoides parinus) under five proportions (16:1, 16:4, 16:16, 16:64, and 16:256 mites) against a mock community composed by Proctophyllodes clavatus and Proctophyllodes sylviae. In all mixtures, we retrieved sequence reads from all species. We found a strong linear relationship between 454 reads and the real proportion of individuals in the mixture for both focal species. The slope for Pr. stylifer was close to one (0.904), and the intercept close to zero (-0.007), thus showing an almost perfect correspondence between real and estimated proportions. The slope for Pt. parinus was 0.351 and the intercept 0.307, showing that while the estimated proportion increased linearly relative to real proportions of individuals in the samples, proportions were overestimated at low real proportions and underestimated at larger ones. Additionally, pyrosequencing replicates from each DNA extraction were highly repeatable (R = 0.920 and 0.972, respectively), showing that the quantification method is highly consistent given a DNA extract. Our study suggests that NGS is a promising tool for abundance estimation of feather mites' communities in birds.

  2. The Source of the Quantum Vacuum

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2009-01-01

    Full Text Available The quantum vacuum consists of virtual particles randomly appearing and disappearing in free space. Ordinarily the wavenumber (or frequency spectrum of the zero-point fields for these virtual particles is assumed to be unbounded. The unbounded nature of the spectrum leads in turn to an infinite energy density for the quantum vacuum and an infinite renormalization mass for the free particle. This paper argues that there is a more fundamental vacuum state, the Planck vacuum, from which the quantum vacuum emerges and that the "graininess" of this more fundamental vacuum state truncates the wavenumber spectrum and leads to a finite energy density and a finite renormalization mass.

  3. The Source of the Quantum Vacuum

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2009-01-01

    Full Text Available The quantum vacuum consists of virtual particles randomly appearing and disappearing in free space. Ordinarily the wavenumber (or frequency spectrum of the zero-point fields for these virtual particles is assumed to be unbounded. The unbounded nature of the spectrum leads in turn to an infinite energy density for the quantum vacuum and an infinite renormalization mass for the free particle. This paper argues that there is a more fundamental vacuum state, the Planck vacuum, from which the quantum vacuum emerges and that the “graininess” of this more fundamental vacuum state truncates the wavenumber spectrum and leads to a finite energy density and a finite renormalization mass.

  4. Gases and vacua handbook of vacuum physics

    CERN Document Server

    Beck, A H

    2013-01-01

    Handbook of Vacuum Physics, Volume 1: Gases and Vacua provides information on the many aspects of vacuum technology, from material on the quantum theoretical aspects of the complex semi-conductors used for thermionic and photo-electric emission to data on the performance of commercially available pumps, gauges, and high-vacuum materials. The handbook satisfies the need of workers using vacuum apparatuses or works on the diverse applications of high-vacuum technology in research and industry. The book is a compilation of long articles prepared by experts in vacuum technology. Sufficient theoret

  5. The Fate of the Higgs Vacuum

    CERN Document Server

    Gregory, Ruth

    2016-01-01

    This talk reviews our recent work showing how tiny black holes can act as nucleation sites for the decay of the metastable Higgs vacuum. We start by discussing the formation of thin wall bubbles of true vacuum inside a false vacuum, and show how adding a black hole lowers the action of the Euclidean tunneling solution, thus strongly enhancing the probability of vacuum decay. We then review numerical results for the Higgs vacuum showing that the decay rate is even higher for these "thick wall" bubbles. The results imply either tiny black holes are not a component of our universe, or BSM corrections to the Higgs potential must stabilise our vacuum.

  6. ICO amplicon NGS data analysis: a Web tool for variant detection in common high-risk hereditary cancer genes analyzed by amplicon GS Junior next-generation sequencing.

    Science.gov (United States)

    Lopez-Doriga, Adriana; Feliubadaló, Lídia; Menéndez, Mireia; Lopez-Doriga, Sergio; Morón-Duran, Francisco D; del Valle, Jesús; Tornero, Eva; Montes, Eva; Cuesta, Raquel; Campos, Olga; Gómez, Carolina; Pineda, Marta; González, Sara; Moreno, Victor; Capellá, Gabriel; Lázaro, Conxi

    2014-03-01

    Next-generation sequencing (NGS) has revolutionized genomic research and is set to have a major impact on genetic diagnostics thanks to the advent of benchtop sequencers and flexible kits for targeted libraries. Among the main hurdles in NGS are the difficulty of performing bioinformatic analysis of the huge volume of data generated and the high number of false positive calls that could be obtained, depending on the NGS technology and the analysis pipeline. Here, we present the development of a free and user-friendly Web data analysis tool that detects and filters sequence variants, provides coverage information, and allows the user to customize some basic parameters. The tool has been developed to provide accurate genetic analysis of targeted sequencing of common high-risk hereditary cancer genes using amplicon libraries run in a GS Junior System. The Web resource is linked to our own mutation database, to assist in the clinical classification of identified variants. We believe that this tool will greatly facilitate the use of the NGS approach in routine laboratories.

  7. Filling the vacuum at LHCb

    CERN Multimedia

    Katarina Anthony

    2013-01-01

    Last month, the Vacuum, Surfaces and Coatings (VSC) group was tasked with an unusually delicate operation in the LHCb experiment cavern: removing the LHC beam pipe while keeping the sensitive Vertex Locator vacuum vessel (VELO) completely isolated from the action.   The VSC group seal off the VELO beam pipe with a flange. Image: Gloria Corti. LHCb’s VELO detector is one of the crown jewels of the experiment. With detector elements surrounded by a vacuum, it gets as close as 5 cm from the beam. Fantastic for physics, but difficult for all-important access. “Because of the sensitivity of the VELO detector and its proximity to the beam, the collaboration decided not to bake (see box) its portion of the beam pipe,” says Giulia Lanza (TE-VSC-LBV), the expert in charge of the beam vacuum operation. “Our group was therefore asked to remove the rest of the LHC beam pipe while keeping the VELO portion of the pipe completely isolated. This work...

  8. Entanglement in the Bogoliubov vacuum

    DEFF Research Database (Denmark)

    Poulsen, Uffe Vestergaard; Meyer, T.; Lewenstein, M.

    2005-01-01

    We analyze the entanglement properties of the Bogoliubov vacuum, which is obtained as a second-order approximation to the ground state of an interacting Bose-Einstein condensate. We work in one- and two-dimensional lattices and study the entanglement between two groups of sites as a function...

  9. Vacuum assisted closure in coloproctology

    NARCIS (Netherlands)

    Bemelman, W.A.

    2009-01-01

    Vacuum-assisted closure has earned its indications in coloproctology. It has been described with variable results in the treatment of large perineal defects after abdominoperineal excision, in the treatment of stoma dehiscence and perirectal abscesses. The most promising indication for

  10. Vacuum barrier for excimer lasers

    Energy Technology Data Exchange (ETDEWEB)

    Shurter, Roger P. (Jemez Springs, NM)

    1992-01-01

    A barrier for separating the vacuum area of a diode from the pressurized gas area of an excimer laser. The barrier is a composite material comprising layers of a metal such as copper, along with layers of polyimide, and a matrix of graphite fiber yarns impregnated with epoxy. The barrier is stronger than conventional foil barriers, and allows greater electron throughput.

  11. Vacuum barrier for excimer lasers

    Energy Technology Data Exchange (ETDEWEB)

    Shurter, R.P.

    1992-09-15

    A barrier for separating the vacuum area of a diode from the pressurized gas area of an excimer laser. The barrier is a composite material comprising layers of a metal such as copper, along with layers of polyimide, and a matrix of graphite fiber yarns impregnated with epoxy. The barrier is stronger than conventional foil barriers, and allows greater electron throughput. 3 figs.

  12. Vacuum mounting for piezoelectric transducers

    Science.gov (United States)

    Tiede, D. A.

    1977-01-01

    Special housing couples piezoelectric transducers to nonporous surfaces for ultrasonic or acoustic-emission testing. Device, while providing sound isolation on flat or nonflat surfaces, can be attached and detached quickly. Vacuum sealing mechanism eliminates need for permanent or semipermanent bonds, viscous coupling liquids, weights, magnets, tape, or springs ordinarily used.

  13. Brine Distribution after Vacuum Saturation

    DEFF Research Database (Denmark)

    Hedegaard, Kathrine; Andersen, Bertel Lohmann

    1999-01-01

    Experiments with the vacuum saturation method for brine in plugs of chalk showed that a homogeneous distribution of brine cannot be ensured at saturations below 20% volume. Instead of a homogeneous volume distribution the brine becomes concentrated close to the surfaces of the plugs...

  14. A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE).

    Science.gov (United States)

    Wu, Tsung-Jung; Shamsaddini, Amirhossein; Pan, Yang; Smith, Krista; Crichton, Daniel J; Simonyan, Vahan; Mazumder, Raja

    2014-01-01

    Years of sequence feature curation by UniProtKB/Swiss-Prot, PIR-PSD, NCBI-CDD, RefSeq and other database biocurators has led to a rich repository of information on functional sites of genes and proteins. This information along with variation-related annotation can be used to scan human short sequence reads from next-generation sequencing (NGS) pipelines for presence of non-synonymous single-nucleotide variations (nsSNVs) that affect functional sites. This and similar workflows are becoming more important because thousands of NGS data sets are being made available through projects such as The Cancer Genome Atlas (TCGA), and researchers want to evaluate their biomarkers in genomic data. BioMuta, an integrated sequence feature database, provides a framework for automated and manual curation and integration of cancer-related sequence features so that they can be used in NGS analysis pipelines. Sequence feature information in BioMuta is collected from the Catalogue of Somatic Mutations in Cancer (COSMIC), ClinVar, UniProtKB and through biocuration of information available from publications. Additionally, nsSNVs identified through automated analysis of NGS data from TCGA are also included in the database. Because of the petabytes of data and information present in NGS primary repositories, a platform HIVE (High-performance Integrated Virtual Environment) for storing, analyzing, computing and curating NGS data and associated metadata has been developed. Using HIVE, 31 979 nsSNVs were identified in TCGA-derived NGS data from breast cancer patients. All variations identified through this process are stored in a Curated Short Read archive, and the nsSNVs from the tumor samples are included in BioMuta. Currently, BioMuta has 26 cancer types with 13 896 small-scale and 308 986 large-scale study-derived variations. Integration of variation data allows identifications of novel or common nsSNVs that can be prioritized in validation studies. Database URL: BioMuta: http

  15. Vacuum polarization and Hawking radiation

    Science.gov (United States)

    Rahmati, Shohreh

    Quantum gravity is one of the interesting fields in contemporary physics which is still in progress. The purpose of quantum gravity is to present a quantum description for spacetime at 10-33cm or find the 'quanta' of gravitational interaction.. At present, the most viable theory to describe gravitational interaction is general relativity which is a classical theory. Semi-classical quantum gravity or quantum field theory in curved spacetime is an approximation to a full quantum theory of gravity. This approximation considers gravity as a classical field and matter fields are quantized. One interesting phenomena in semi-classical quantum gravity is Hawking radiation. Hawking radiation was derived by Stephen Hawking as a thermal emission of particles from the black hole horizon. In this thesis we obtain the spectrum of Hawking radiation using a new method. Vacuum is defined as the possible lowest energy state which is filled with pairs of virtual particle-antiparticle. Vacuum polarization is a consequence of pair creation in the presence of an external field such as an electromagnetic or gravitational field. Vacuum polarization in the vicinity of a black hole horizon can be interpreted as the cause of the emission from black holes known as Hawking radiation. In this thesis we try to obtain the Hawking spectrum using this approach. We re-examine vacuum polarization of a scalar field in a quasi-local volume that includes the horizon. We study the interaction of a scalar field with the background gravitational field of the black hole in the desired quasi-local region. The quasi-local volume is a hollow cylinder enclosed by two membranes, one inside the horizon and one outside the horizon. The net rate of particle emission can be obtained as the difference of the vacuum polarization from the outer boundary and inner boundary of the cylinder. Thus we found a new method to derive Hawking emission which is unitary and well defined in quantum field theory.

  16. Points to consider in the clinical use of NGS panels for mitochondrial disease: an analysis of gene inclusion and consent forms.

    Science.gov (United States)

    Platt, Julia; Cox, Rachel; Enns, Gregory M

    2014-08-01

    Mitochondrial next generation sequencing (NGS) panels offer single-step analysis of the numerous nuclear genes involved in the structure, function, and maintenance of mitochondria. However, the complexities of mitochondrial biology and genetics raise points for consideration in clinical use of these tests. To understand the current status of mitochondrial genetic testing, we assessed the gene offerings and consent forms of mitochondrial NGS panels available from seven US-based clinical laboratories. The NGS panels varied markedly in number of genes (101-1204 genes), and the proportion of genes causing "classic" mitochondrial diseases and their phenocopies ranged widely between labs (18 %-94 % of panel contents). All panels included genes not associated with classic mitochondrial diseases (6 %-28 % of panel contents), including genes causing adult-onset neurodegenerative disorders, cancer predisposition, and other genetic syndromes or inborn errors of metabolism. Five of the panels included genes that are not listed in OMIM to be associated with a disease phenotype (5 %-49 % of panel contents). None of the consent documents reviewed had options for patient preference regarding receipt of incidental findings. These findings raise points of discussion applicable to mitochondrial diagnostics, but also to the larger arenas of exome and genome sequencing, including the need to consider the boundaries between clinical and research testing, the necessity of appropriate informed consent, and the responsibilities of clinical laboratories and clinicians. Based on these findings, we recommend careful evaluation by laboratories of the genes offered on NGS panels, clear communication of the predicted phenotypes, and revised consent forms to allow patients to make choices about receiving incidental findings. We hope that our analysis and recommendations will help to maximize the considerable clinical utility of NGS panels for the diagnosis of mitochondrial disease.

  17. A New Approach for Calculating Vacuum Susceptibility

    Institute of Scientific and Technical Information of China (English)

    宗红石; 平加伦; 顾建中

    2004-01-01

    Based on the Dyson-Schwinger approach, we propose a new method for calculating vacuum susceptibilities. As an example, the vector vacuum susceptibility is calculated. A comparison with the results of the previous approaches is presented.

  18. Polarizable vacuum analysis of electromagnetic fields

    CERN Document Server

    Ye, Xing-Hao

    2009-01-01

    By examining the electric displacement in a dielectric medium and in a vacuum, the polarization property of quantum vacuum is discussed. Both the electric and magnetic fields are analysed in the framework of polarizable vacuum. It is found that the energy and force generated by the electric and magnetic fields can then be understood in a natural way. As an application, the electromagnetic wave is also investigated, which reaches a polarizable vacuum interpretation of the energy and spin of a photon.

  19. The Dirac-Electron Vacuum Wave

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2016-07-01

    Full Text Available This paper argues that the Dirac equation can be interpreted as an interaction between the electron core and the Planck vacuum state, where the positive and negative solutions represent respectively the dynamics of the electron core and a vacuum wave propagating within the vacuum state. Results show that the nonrelativistic positive solution reduces to the Schrödinger wave equation

  20. Vacuum alignment with and without elementary scalars

    DEFF Research Database (Denmark)

    Alanne, Tommi; Gertov, Helene; Meroni, Aurora

    2016-01-01

    We systematically elucidate differences and similarities of the vacuum alignment issue in composite and renormalizable elementary extensions of the Standard Model featuring a pseudo-Goldstone Higgs. We also provide general conditions for the stability of the vacuum in the elementary framework......, thereby extending previous studies of the vacuum alignment....

  1. 14 CFR 29.1433 - Vacuum systems.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Vacuum systems. 29.1433 Section 29.1433... STANDARDS: TRANSPORT CATEGORY ROTORCRAFT Equipment Miscellaneous Equipment § 29.1433 Vacuum systems. (a... the discharge lines from the vacuum air pump when the delivery temperature of the air becomes unsafe...

  2. 14 CFR 25.1433 - Vacuum systems.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Vacuum systems. 25.1433 Section 25.1433... STANDARDS: TRANSPORT CATEGORY AIRPLANES Equipment Miscellaneous Equipment § 25.1433 Vacuum systems. There... discharge lines from the vacuum air pump when the delivery temperature of the air becomes unsafe. ...

  3. Utilize Vacuum Forming to Make Interdisciplinary Connections

    Science.gov (United States)

    Love, Tyler S.; Valenza, Frank

    2011-01-01

    The concept of vacuum forming has been around since the 19th century, despite not being fully utilized in industry until the 1950s. In the past, industrial arts classes have used vacuum-forming projects to concentrate solely on the manufacturing process and the final product. However, vacuum forming is not just an old industrial arts activity; it…

  4. Vacuum alignment with and without elementary scalars

    DEFF Research Database (Denmark)

    Alanne, Tommi; Gertov, Helene; Meroni, Aurora;

    2016-01-01

    We systematically elucidate differences and similarities of the vacuum alignment issue in composite and renormalizable elementary extensions of the Standard Model featuring a pseudo-Goldstone Higgs. We also provide general conditions for the stability of the vacuum in the elementary framework......, thereby extending previous studies of the vacuum alignment....

  5. Vacuum alignment with(out) elementary scalars

    CERN Document Server

    Alanne, Tommi; Meroni, Aurora; Sannino, Francesco

    2016-01-01

    We systematically elucidate differences and similarities of the vacuum alignment issue in composite and renormalizable elementary extensions of the Standard Model featuring a pseudo-Goldstone Higgs. We also provide general conditions for the stability of the vacuum in the elementary framework, thereby extending previous studies of the vacuum alignment.

  6. Gravitational vacuum polarization; 2, energy conditions in the Boulware vacuum

    CERN Document Server

    Visser, M

    1996-01-01

    I show that in the Boulware vacuum (1) all standard (point-wise and averaged) energy conditions are violated throughout the exterior region---all the way from spatial infinity down to the event horizon, and (2) outside the event horizon the standard point-wise energy conditions are violated in a maximal manner: they are violated at all points and for all null/timelike vectors. (The region inside the event horizon is considerably messier, and of dubious physical relevance. Nevertheless the standard point-wise energy conditions also seem to be violated even inside the event horizon.) This is rather different from the case of the Hartle--Hawking vacuum, wherein violations of the energy conditions were confined to the region inside the unstable photon orbit. These calculations are for the quantum stress-energy tensor corresponding to a conformally-coupled massless scalar field in the Boulware vacuum. I work in the test-field limit, restrict attention to the Schwarzschild geometry, and invoke a mixture of analytic...

  7. Visualizing electromagnetic vacuum by MRI

    CERN Document Server

    Chandrashekar, Chandrika S; Chandrashekar, S; Taylor, Erika A; Taylor, Deanne M

    2016-01-01

    Based upon Maxwell's equations, it has long been established that oscillating electromagnetic (EM) fields incident upon a metal surface decay exponentially inside the conductor, leading to a virtual EM vacuum at sufficient depths. Magnetic resonance imaging (MRI) utilizes radiofrequency (r.f.) EM fields to produce images. Here we present the first visualization of an EM vacuum inside a bulk metal strip by MRI, amongst several novel findings. We uncover unexpected MRI intensity patterns arising from two orthogonal pairs of faces of a metal strip, and derive formulae for their intensity ratios. Further, we furnish chemical shift imaging (CSI) results that discriminate different faces (surfaces) of a metal block according to their distinct nuclear magnetic resonance (NMR) chemical shifts, which holds much promise for monitoring surface chemical reactions noninvasively. Bulk metals are ubiquitous, and MRI is a premier noninvasive diagnostic tool. Combining the two, the emerging field of bulk metal MRI can be expe...

  8. "Flat-Fish" Vacuum Chamber

    CERN Multimedia

    CERN PhotoLab

    1978-01-01

    The picture shows a "Flat-Fish" vacuum chamber being prepared in the ISR workshop for testing prior to installation in the Split Field Magnet (SFM) at intersection I4. The two shells of each part were hydroformed from 0.15 mm thick inconel 718 sheet (with end parts in inconel 600 for easier manual welding to the arms) and welded toghether with two strips which were attached by means of thin stainless steel sheets to the Split Field Magnet poles in order to take the vertical component of the atmospheric pressure force. This was the thinnest vacuum chamber ever made for the ISR. Inconel material was chosen for its high elastic modulus and strenght at chamber bake-out temperature. In this picture the thin sheets transferring the vertical component of the atmosferic pressure force are attached to a support frame for testing. See also 7712182, 7712179.

  9. Decoherence delays false vacuum decay

    Science.gov (United States)

    Bachlechner, Thomas C.

    2013-05-01

    We show that gravitational interactions between massless thermal modes and a nucleating Coleman-de Luccia bubble may lead to efficient decoherence and strongly suppress metastable vacuum decay for bubbles that are small compared to the Hubble radius. The vacuum decay rate including gravity and thermal photon interactions has the exponential scaling \\Gamma \\sim \\Gamma _{CDL}^{2}, where ΓCDL is the Coleman-de Luccia decay rate neglecting photon interactions. For the lowest metastable initial state an efficient quantum Zeno effect occurs due to thermal radiation of temperatures as low as the de Sitter temperature. This strong decoherence effect is a consequence of gravitational interactions with light external mode. We argue that efficient decoherence does not occur for the case of Hawking-Moss decay. This observation is consistent with requirements set by Poincaré recurrence in de Sitter space.

  10. Decoherence delays false vacuum decay

    CERN Document Server

    Bachlechner, Thomas C

    2012-01-01

    We show that gravitational interactions between thermal de Sitter photons and a nucleating Coleman-de Luccia bubble lead to efficient decoherence and strongly suppress metastable vacuum decay for bubbles that are small compared to the Hubble radius. The vacuum decay rate including gravity and photon interactions has the exponential scaling $\\Gamma\\sim \\Gamma_{0}^{2}$, where $\\Gamma_{0}$ is the Coleman-de Luccia decay rate neglecting photon interactions. This strong decoherence effect is a generic consequence of gravitational interactions with light external modes. We argue that efficient decoherence does not occur for the case of Hawking-Moss decay. This observation is consistent with requirements set by Poincare recurrence in de Sitter space.

  11. LEP vacuum chamber, early prototype

    CERN Multimedia

    CERN PhotoLab

    1978-01-01

    The structure of LEP, with long bending magnets and little access to the vacuum chamber between them, required distributed pumping. This is an early prototype for the LEP vacuum chamber, made from extruded aluminium. The main opening is for the beam. The small channel to the right is for cooling water, to carry away the heat deposited by the synchroton radiation from the beam. The 4 slots in the channel to the left house the strip-shaped ion-getter pumps (see 7810255). The ion-getter pumps depended on the magnetic field of the bending magnets, too low at injection energy for the pumps to function well. Also, a different design was required outside the bending magnets. This design was therefore abandoned, in favour of a thermal getter pump (see 8301153 and 8305170).

  12. Low-Cost "Vacuum Desiccator"

    Science.gov (United States)

    Sweet, Frederick

    2004-10-01

    Described are individualized, low-cost, and safe desiccators that can be efficiently and rapidly made with an inexpensive kitchen aid sold for shrink-wrapping food. The device can be used for enclosing small vials or bottles and also jars that are too large to be placed in conventional glass or plastic desiccators. This shrink-wrapping device is proposed for producing "vacuum desiccators" in large undergraduate chemistry laboratories or in graduate and research laboratories.

  13. Improved Vacuum-Tight Connector

    Science.gov (United States)

    Rudin, Frank

    1989-01-01

    Simple reinforcing tube increases service life and improves seal. Short stainless-steel tube inserted in copper tube to reinforce against compression, preventing leaks due to thermal distortion or to collapse under squeeze of ferrule in compressure fitting. Several test specimens of improved connector constructed, tested, and evaluated. Fittings not only operated successfully at required operating conditions of vacuum and temperature but also consistently demonstrated high reliability after loosened and tightened many times.

  14. Vacuum barrier for excimer lasers

    Energy Technology Data Exchange (ETDEWEB)

    Shurter, R.P.

    1990-10-10

    This invention is comprised of a barrier for separating the vacuum area of a diode from the pressurized gas area of an excimer laser. The barrier is a composite material comprising layers of a metal such as copper, along with layers of polyimide, and a matrix of graphite fiber yearns impregnated with epoxy. The barrier is stronger than conventional foil barriers, and allows greater electron throughput.

  15. The statistics of vacuum geometry

    Energy Technology Data Exchange (ETDEWEB)

    Duncan, Melissa [Merton College, University of Oxford,OX1 4JD (United Kingdom); Gu, Wei [The Interdisciplinary Center for Theoretical Study,University of Science and Technology of China, Hefei, Anhui, 230026 (China); He, Yang-Hui [Merton College, University of Oxford,OX1 4JD (United Kingdom); Department of Mathematics, City University,London, EC1V 0HB (United Kingdom); School of Physics, NanKai University,Tianjin, 300071 (China); Zhou, Da [The Interdisciplinary Center for Theoretical Study,University of Science and Technology of China, Hefei, Anhui, 230026 (China)

    2014-06-09

    We investigate the vacuum moduli space of supersymmetric gauge theories en masse by probing the space of such vacua from a statistical standpoint. Using quiver gauge theories with N=1 supersymmetry as a testing ground, we sample over a large number of vacua as algebraic varieties, computing explicitly their dimension, degree and Hilbert series. We study the distribution of these geometrical quantities, and also address the question of how likely it is for the moduli space to be Calabi-Yau.

  16. Random numbers from vacuum fluctuations

    Science.gov (United States)

    Shi, Yicheng; Chng, Brenda; Kurtsiefer, Christian

    2016-07-01

    We implement a quantum random number generator based on a balanced homodyne measurement of vacuum fluctuations of the electromagnetic field. The digitized signal is directly processed with a fast randomness extraction scheme based on a linear feedback shift register. The random bit stream is continuously read in a computer at a rate of about 480 Mbit/s and passes an extended test suite for random numbers.

  17. Vacuum electronics applications at CERN

    CERN Document Server

    Jensen, E

    2009-01-01

    CERN operates a large number of vacuum electronics based RF power amplifiers covering a wide frequency range – over 300 sockets with 24 different grid tubes and klystrons are in use and require constant care to insure reliable operation of the accelerators. This is in particular true for the LHC and its injector chain, for which a program of improvement and stepwise upgrade has started. These include IOT’s for the SPS and klystrons and modulators for Linac4 and SPL. The CLIC study and the CTF3 facility are relevant to vacuum electronics in many ways: The CLIC primary RF power, to be provided at 1 GHz, requires highest possible efficiency and phase stability, MBK’s are likely candidates. The CLIC RF power source and CTF3 are themselves large vacuum electronics applications, consequently there are areas of common interest and concern, including fabrication techniques, pulse compression techniques, breakdown and multipactor theory and simulation, material fatigue, numerical analysis of slow-wave structures...

  18. Vacuum-Packaging Technology for IRFPAs

    Science.gov (United States)

    Matsumura, Takeshi; Tokuda, Takayuki; Tsutinaga, Akinobu; Kimata, Masafumi; Abe, Hideyuki; Tokashiki, Naotaka

    We developed vacuum-packaging equipment and low-cost vacuum packaging technology for IRFPAs. The equipment is versatile and can process packages with various materials and structures. Getters are activated before vacuum packaging, and we can solder caps/ceramic-packages and caps/windows in a high-vacuum condition using this equipment. We also developed a micro-vacuum gauge to measure pressure in vacuum packages. The micro-vacuum gauge uses the principle of thermal conduction of gases. We use a multi-ceramic package that consists of six packages fabricated on a ceramic sheet, and confirm that the pressure in the processed packages is sufficiently low for high-performance IRFPA.

  19. Vacuum Technology and Standardization-An Update

    Science.gov (United States)

    Akram, H. M.; Rashid, H.

    2011-06-01

    Vacuum technology has been vital for the progress in almost every field of modern industrial & scientific research and technological developments. Research in this field is therefore important for the rapid progress in other sophisticated technologies. The modern society require precise know-how of vacuum metrology for its complex and sophisticated manufacturing processes and research activities. Accuracy in vacuum measurements is therefore an essential need for every application. The required accuracy is achieved with the help of well-calibrated vacuum gauges and this is possible only, if there exist proper vacuum standards of required range and accuracy. In this paper, a brief review of recently developed different vacuum standards, namely Standard Mercury Manometer, Standard Volume Expansion System and Standard Orifice Flow System will be presented, employed for the calibration of low, medium and high vacuum gauges respectively. Our recently developed standards are simple in design, least in vibration & degassing rate with desired accuracy, ease of operation and cost effective.

  20. Photometric calibration of NGS/POSS and ESO/SRC plates using the NOAO PDS measuring engine. I - Stellar photometry

    Science.gov (United States)

    Cutri, Roc M.; Low, Frank J.; Marvel, Kevin B.

    1992-01-01

    The PDS/Monet measuring engine at the National Optical Astronomy Observatory was used to obtain photometry of nearly 10,000 stars on the NGS/POSS and 2000 stars on the ESO/SRC Survey glass plates. These measurements have been used to show that global transformation functions exist that allow calibration of stellar photometry from any blue or red plate to equivalent Johnson B and Cousins R photoelectric magnitudes. The four transformation functions appropriate for the POSS O and E and ESO/SRC J and R plates were characterized, and it was found that, within the measurement uncertainties, they vary from plate to plate only by photometric zero-point offsets. A method is described to correct for the zero-point shifts and to obtain calibrated B and R photometry of stellar sources to an average accuracy of 0.3-0.4 mag within the range R between values of 8 and 19.5 for red plates in both surveys, B between values of 9 and 20.5 on POSS blue plates, and B between values of 10 and 20.5 on ESO/SRC blue plates. This calibration procedure makes it possible to obtain rapid photometry of very large numbers of stellar sources.

  1. Electroweak Vacuum Instability and Renormalized Higgs Field Vacuum Fluctuations in the Inflationary Universe

    CERN Document Server

    Kohri, Kazunori

    2016-01-01

    In this work, we investigated the electroweak vacuum instability during or after inflation. In the inflationary Universe, i.e., de Sitter space, the vacuum field fluctuations $\\left$ enlarge in proportion to the Hubble scale $H^{2}$. Therefore, the large inflationary vacuum fluctuations of the Higgs field $\\left$ are potentially catastrophic to trigger the vacuum transition to the negative-energy Planck-scale vacuum state and cause an immediate collapse of the Universe. However, the vacuum field fluctuations $\\left$, i.e., the vacuum expectation values have an ultraviolet divergence, and therefore a renormalization is necessary to estimate the physical effects of the vacuum transition. Thus, in this paper, we revisit the electroweak vacuum instability from the perspective of quantum field theory (QFT) in curved space-time, and discuss the dynamical behavior of the homogeneous Higgs field $\\phi$ determined by the effective potential ${ V }_{\\rm eff}\\left( \\phi \\right)$ in curved space-time and the renormalized...

  2. Running vacuum cosmological models: linear scalar perturbations

    Science.gov (United States)

    Perico, E. L. D.; Tamayo, D. A.

    2017-08-01

    In cosmology, phenomenologically motivated expressions for running vacuum are commonly parameterized as linear functions typically denoted by Λ(H2) or Λ(R). Such models assume an equation of state for the vacuum given by bar PΛ = - bar rhoΛ, relating its background pressure bar PΛ with its mean energy density bar rhoΛ ≡ Λ/8πG. This equation of state suggests that the vacuum dynamics is due to an interaction with the matter content of the universe. Most of the approaches studying the observational impact of these models only consider the interaction between the vacuum and the transient dominant matter component of the universe. We extend such models by assuming that the running vacuum is the sum of independent contributions, namely bar rhoΛ = Σibar rhoΛi. Each Λ i vacuum component is associated and interacting with one of the i matter components in both the background and perturbation levels. We derive the evolution equations for the linear scalar vacuum and matter perturbations in those two scenarios, and identify the running vacuum imprints on the cosmic microwave background anisotropies as well as on the matter power spectrum. In the Λ(H2) scenario the vacuum is coupled with every matter component, whereas the Λ(R) description only leads to a coupling between vacuum and non-relativistic matter, producing different effects on the matter power spectrum.

  3. Gravitational vacuum polarization; 4, Energy conditions in the Unruh vacuum

    CERN Document Server

    Visser, M

    1997-01-01

    Building on a series of earlier papers [gr-qc/9604007, gr-qc/9604008, gr-qc/9604009], I investigate the various point-wise and averaged energy conditions in the Unruh vacuum. I consider the quantum stress-energy tensor corresponding to a conformally coupled massless scalar field, work in the test-field limit, restrict attention to the Schwarzschild geometry, and invoke a mixture of analytical and numerical techniques. I construct a semi-analytic model for the stress-energy tensor that globally reproduces all known numerical results to within 0.8%, and satisfies all known analytic features of the stress-energy tensor. I show that in the Unruh vacuum (1) all standard point-wise energy conditions are violated throughout the exterior region--all the way from spatial infinity down to the event horizon, and (2) the averaged null energy condition is violated on all outgoing radial null geodesics. In a pair of appendices I indicate general strategy for constructing semi-analytic models for the stress-energy tensor in...

  4. IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST.

    Science.gov (United States)

    Aouinti, Safa; Giudicelli, Véronique; Duroux, Patrice; Malouche, Dhafer; Kossida, Sofia; Lefranc, Marie-Paule

    2016-01-01

    There is a huge need for standardized analysis and statistical procedures in order to compare the complex immune repertoires of antigen receptors immunoglobulins (IG) and T cell receptors (TR) obtained by next generation sequencing (NGS). NGS technologies generate millions of nucleotide sequences and have led to the development of new tools. The IMGT/HighV-QUEST, available since 2010, is the first global web portal for the analysis of IG and TR high throughput sequences. IMGT/HighV-QUEST provides standardized outputs for the characterization of the "IMGT clonotype (AA)" (AA for amino acids) and their comparison in up to one million sequences. Standardized statistical procedures for "IMGT clonotype (AA)" diversity or expression comparisons have recently been described, however, no tool was yet available. IMGT/StatClonotype, a new IMGT(®) tool, evaluates and visualizes statistical significance of pairwise comparisons of IMGT clonotype (AA) diversity or expression, per V (variable), D (diversity), and J (joining) gene of a given IG or TR group, from NGS IMGT/HighV-QUEST statistical output. IMGT/StatClonotype tool is incorporated in the R package "IMGTStatClonotype," with a user-friendly interface. IMGT/StatClonotype is downloadable at IMGT(®) for users to evaluate pairwise comparison of IG and TR NGS statistical output from IMGT/HighV-QUEST and to visualize, on their web browser, the statistical significance of IMGT clonotype (AA) diversity or expression, per gene, the comparative analysis of CDR-IMGT and the V-D-J associations, in immunoprofiles from normal or pathological immune responses.

  5. IMGT/StatClonotype for Pairwise Evaluation and Visualization of NGS IG and TR IMGT Clonotype (AA) Diversity or Expression from IMGT/HighV-QUEST

    Science.gov (United States)

    Aouinti, Safa; Giudicelli, Véronique; Duroux, Patrice; Malouche, Dhafer; Kossida, Sofia; Lefranc, Marie-Paule

    2016-01-01

    There is a huge need for standardized analysis and statistical procedures in order to compare the complex immune repertoires of antigen receptors immunoglobulins (IG) and T cell receptors (TR) obtained by next generation sequencing (NGS). NGS technologies generate millions of nucleotide sequences and have led to the development of new tools. The IMGT/HighV-QUEST, available since 2010, is the first global web portal for the analysis of IG and TR high throughput sequences. IMGT/HighV-QUEST provides standardized outputs for the characterization of the “IMGT clonotype (AA)” (AA for amino acids) and their comparison in up to one million sequences. Standardized statistical procedures for “IMGT clonotype (AA)” diversity or expression comparisons have recently been described, however, no tool was yet available. IMGT/StatClonotype, a new IMGT® tool, evaluates and visualizes statistical significance of pairwise comparisons of IMGT clonotype (AA) diversity or expression, per V (variable), D (diversity), and J (joining) gene of a given IG or TR group, from NGS IMGT/HighV-QUEST statistical output. IMGT/StatClonotype tool is incorporated in the R package “IMGTStatClonotype,” with a user-friendly interface. IMGT/StatClonotype is downloadable at IMGT®1 for users to evaluate pairwise comparison of IG and TR NGS statistical output from IMGT/HighV-QUEST and to visualize, on their web browser, the statistical significance of IMGT clonotype (AA) diversity or expression, per gene, the comparative analysis of CDR-IMGT and the V–D–J associations, in immunoprofiles from normal or pathological immune responses. PMID:27667992

  6. Vacuum Chambers for LEP sections

    CERN Multimedia

    1983-01-01

    The picture shows sections of the LEP vacuum chambers to be installed in the dipole magnets (left) and in the quadrupoles (right). The dipole chamber has three channels: the beam chamber, the pumping duct where the NEG (non-evaporabe getter) is installed and the water channel for cooling (on top in the picture). The pumping duct is connected to the beam chamber through holes in the separating wall. The thick lead lining to shield radiation can also be seen. These chambers were manufactured as extruded aluminium alloy profiles.

  7. Vacuum Decay via Lorentzian Wormholes

    Science.gov (United States)

    Rosales, J. L.

    We speculate about the space-time description due to the presence of Lorentzian worm-holes (handles in space-time joining two distant regions or other universes) in quantum gravity. The semiclassical rate of production of these Lorentzian wormholes in Reissner-Nordström space-times is calculated as a result of the spontaneous decay of vacuum due to a real tunneling configuration. In the magnetic case it only depends on the value of the field theoretical fine structure constant. We predict that the quantum probability corresponding to the nucleation of such geodesically complete space-times should be acutally negligible in our physical Universe.

  8. FGFR2 mutation in a patient without typical features of Pfeiffer syndrome--The emerging role of combined NGS and phenotype based strategies.

    Science.gov (United States)

    Flöttmann, Ricarda; Knaus, Alexej; Zemojtel, Tomasz; Robinson, Peter N; Mundlos, Stefan; Horn, Denise; Spielmann, Malte

    2015-08-01

    Pfeiffer syndrome (MIM: #101600) is a rare autosomal dominant disorder classically characterized by limb and craniofacial anomalies. It is caused by heterozygous mutations in the fibroblast growth factor receptors types 1 and 2 (FGFR1 and FGFR2). We applied a next generation sequencing (NGS) panel approach comprising all 2877 genes currently known to be causative for one or more Mendelian diseases combined with the phenotype based computational tool PhenIX (Phenotypic Interpretation of eXomes). We report on a patient presenting with multiple anomalies of hands and feet including brachydactyly and symphalangism. No clinical diagnosis could be established based on the clinical findings and testing of several genes associated with brachydactyly and symphalangism failed to identify mutations. Via next generation sequencing (NGS) panel approach we then identified a novel de novo missense FGFR2 mutation affecting an amino acid reported to be mutated in Pfeiffer syndrome. Since our patient shows typical radiological findings of Pfeiffer syndrome in hands and feet but at the same time lacks several characteristic features such as clinical signs of craniosynostosis and prominent eyes we suggest introducing the term "FGFR2 associated phenotypes" for similar cases. Our results highlight the emerging role of combined NGS and phenotype based bioinformatics strategies to establish clinical diagnoses.

  9. Neurofibromatosis type 1 molecular diagnosis: what can NGS do for you when you have a large gene with loss of function mutations?

    Science.gov (United States)

    Pasmant, Eric; Parfait, Béatrice; Luscan, Armelle; Goussard, Philippe; Briand-Suleau, Audrey; Laurendeau, Ingrid; Fouveaut, Corinne; Leroy, Chrystel; Montadert, Annelore; Wolkenstein, Pierre; Vidaud, Michel; Vidaud, Dominique

    2015-05-01

    Molecular diagnosis of neurofibromatosis type 1 (NF1) is challenging owing to the large size of the tumour suppressor gene NF1, and the lack of mutation hotspots. A somatic alteration of the wild-type NF1 allele is observed in NF1-associated tumours. Genetic heterogeneity in NF1 was confirmed in patients with SPRED1 mutations. Here, we present a targeted next-generation sequencing (NGS) of NF1 and SPRED1 using a multiplex PCR approach (230 amplicons of ∼150 bp) on a PGM sequencer. The chip capacity allowed mixing 48 bar-coded samples in a 4-day workflow. We validated the NGS approach by retrospectively testing 30 NF1-mutated samples, and then prospectively analysed 279 patients in routine diagnosis. On average, 98.5% of all targeted bases were covered by at least 20X and 96% by at least 100X. An NF1 or SPRED1 alteration was found in 246/279 (88%) and 10/279 (4%) patients, respectively. Genotyping throughput was increased over 10 times, as compared with Sanger, with ∼90[euro ] for consumables per sample. Interestingly, our targeted NGS approach also provided quantitative information based on sequencing depth allowing identification of multiexons deletion or duplication. We then addressed the NF1 somatic mutation detection sensitivity in mosaic NF1 patients and tumours.

  10. Neurofibromatosis type 1 molecular diagnosis: what can NGS do for you when you have a large gene with loss of function mutations?

    Science.gov (United States)

    Pasmant, Eric; Parfait, Béatrice; Luscan, Armelle; Goussard, Philippe; Briand-Suleau, Audrey; Laurendeau, Ingrid; Fouveaut, Corinne; Leroy, Chrystel; Montadert, Annelore; Wolkenstein, Pierre; Vidaud, Michel; Vidaud, Dominique

    2015-01-01

    Molecular diagnosis of neurofibromatosis type 1 (NF1) is challenging owing to the large size of the tumour suppressor gene NF1, and the lack of mutation hotspots. A somatic alteration of the wild-type NF1 allele is observed in NF1-associated tumours. Genetic heterogeneity in NF1 was confirmed in patients with SPRED1 mutations. Here, we present a targeted next-generation sequencing (NGS) of NF1 and SPRED1 using a multiplex PCR approach (230 amplicons of ∼150 bp) on a PGM sequencer. The chip capacity allowed mixing 48 bar-coded samples in a 4-day workflow. We validated the NGS approach by retrospectively testing 30 NF1-mutated samples, and then prospectively analysed 279 patients in routine diagnosis. On average, 98.5% of all targeted bases were covered by at least 20X and 96% by at least 100X. An NF1 or SPRED1 alteration was found in 246/279 (88%) and 10/279 (4%) patients, respectively. Genotyping throughput was increased over 10 times, as compared with Sanger, with ∼90€ for consumables per sample. Interestingly, our targeted NGS approach also provided quantitative information based on sequencing depth allowing identification of multiexons deletion or duplication. We then addressed the NF1 somatic mutation detection sensitivity in mosaic NF1 patients and tumours. PMID:25074460

  11. The large-scale structure of vacuum

    CERN Document Server

    Albareti, F D; Maroto, A L

    2014-01-01

    The vacuum state in quantum field theory is known to exhibit an important number of fundamental physical features. In this work we explore the possibility that this state could also present a non-trivial space-time structure on large scales. In particular, we will show that by imposing the renormalized vacuum energy-momentum tensor to be conserved and compatible with cosmological observations, the vacuum energy of sufficiently heavy fields behaves at late times as non-relativistic matter rather than as a cosmological constant. In this limit, the vacuum state supports perturbations whose speed of sound is negligible and accordingly allows the growth of structures in the vacuum energy itself. This large-scale structure of vacuum could seed the formation of galaxies and clusters very much in the same way as cold dark matter does.

  12. Vacuum systems for the ILC helical undulator

    CERN Document Server

    Malyshev, O B; Clarke, J A; Bailey, I R; Dainton, J B; Malysheva, L I; Barber, D P; Cooke, P; Baynham, E; Bradshaw, T; Brummitt, A; Carr, S; Ivanyushenkov, Y; Rochford, J; Moortgat-Pick, G A

    2007-01-01

    The International Linear Collider (ILC) positron source uses a helical undulator to generate polarized photons of ∼10MeV∼10MeV at the first harmonic. Unlike many undulators used in synchrotron radiation sources, the ILC helical undulator vacuum chamber will be bombarded by photons, generated by the undulator, with energies mostly below that of the first harmonic. Achieving the vacuum specification of ∼100nTorr∼100nTorr in a narrow chamber of 4–6mm4–6mm inner diameter, with a long length of 100–200m100–200m, makes the design of the vacuum system challenging. This article describes the vacuum specifications and calculations of the flux and energy of photons irradiating the undulator vacuum chamber and considers possible vacuum system design solutions for two cases: cryogenic and room temperature.

  13. Impact of Gravity on Vacuum Stability

    CERN Document Server

    Branchina, Vincenzo; Zappala, Dario

    2016-01-01

    In a pioneering paper on the role of gravity on false vacuum decay, Coleman and De Luccia showed that a strong gravitational field can stabilize the false vacuum, suppressing the formation of true vacuum bubbles. This result is obtained for the case when the energy density difference between the two vacua is small, the so called thin wall regime, but is considered of more general validity. Here we show that when this condition does not hold, however, {\\it even a very strong gravitational field (Planckian physics) cannot suppress the formation of true vacuum bubbles}. Contrary to common expectations then, gravitational physics at the Planck scale {\\it does not stabilize the false vacuum}. These results are of crucial importance for the stability analysis of the electroweak vacuum and for searches of new physics beyond the Standard Model.

  14. Molecular Dynamics in the Vacuum Ultraviolet

    Science.gov (United States)

    1989-01-30

    CLASSIFICATION OF THIS PAGE COMPLETED PROJECT SUMMARY TITLE: Molecular dynamics in the Vacuum Ultraviolet PRINCIPAL INVESTIGATOR: Paul L. Houston...DTIC TAB 0 Unannounced 0 By Distr ibution I Availability Codes Avail and I or Dist Special I Molecular Dynamics In the Vacuum Ultraviolet Final Technical...Further development of tunable vacuum ultraviolet sources has opened wide areas of molecular dynamics for study. Completed Research Photodissociation of

  15. THE VACUUM IN NONISENTROPIC GAS DYNAMICS

    Institute of Scientific and Technical Information of China (English)

    Geng Chen; Robin Young

    2012-01-01

    We investigate the vacuum in noniscntropic gas dynamics in one space variable,with the most general equation of states allowed by thermodynamics. Wc recall physical constraints on the equations of state and give explicit and easily checkable conditions under which vacuums occur in the solution of the Riemanu problem.We then present a class of models for which the Riemann problen admits unique global solutions without vacuums.

  16. Straw detector: 1 - Vacuum: 0

    CERN Multimedia

    Katarina Anthony

    2012-01-01

    The NA62 straw tracker is using pioneering CERN technology to measure charged particles from very rare kaon decays. For the first time, a large straw tracker with a 4.4 m2 coverage will be placed directly into an experiment’s vacuum tank, allowing physicists to measure the direction and momentum of charged particles with extreme precision. NA62 measurements using this technique will help physicists take a clear look at the kaon decay rate, which might be influenced by particles and processes that are not included in the Standard Model.   Straw ends are glued to an aluminium frame, a crucial step in the assembly of a module. The ends are then visually inspected before a leak test is performed.  “Although straw detectors have been around since the 1980s, what makes the NA62 straw trackers different is that they can work under vacuum,” explains Hans Danielsson from the PH-DT group leading the NA62 straw project. Straw detectors are basically small drift cha...

  17. Sonoluminescence and the QED vacuum

    CERN Document Server

    Liberati, S; Belgiorno, F; Sciama, Dennis William; Visser, Matt

    1999-01-01

    In this talk I shall describe an extension of the quantum-vacuum approach to sonoluminescence proposed several years ago by J.Schwinger. We shall first consider a model calculation based on Bogolubov coefficients relating the QED vacuum in the presence of an expanded bubble to that in the presence of a collapsed bubble. In this way we shall derive an estimate for the spectrum and total energy emitted. This latter will be shown to be proportional to the volume of space over which the refractive index changes, as Schwinger predicted. After this preliminary check we shall deal with the physical constraints that any viable dynamical model for SL has to satisfy in order to fit the experimental data. We shall emphasize the importance of the timescale of the change in refractive index. This discussion will led us to propose a somewhat different version of dynamical Casimir effect in which the change in volume of the bubble is no longer the only source for the change in the refractive index.

  18. Vacuum technology in the chemical industry

    CERN Document Server

    Jorisch, Wolfgang

    2015-01-01

    Based on the very successful German edition and a seminar held by the German Engineers` Association (VDI) on a regular basis for years now, this English edition has been thoroughly updated and revised to reflect the latest developments. It supplies in particular the special aspects of vacuum technology, applied vacuum pump types and vacuum engineering in the chemical, pharmaceutical and process industry application-segments. The text includes chapters dedicated to latest European regulations for operating in hazardous zones with vacuum systems, methods for process pressure control and regulati

  19. The thermodynamics of a gravitating vacuum

    CERN Document Server

    Heyl, M; Siewert, M

    2014-01-01

    In the present days of modern cosmology it is assumed that the main ingredient to cosmic energy presently is vacuum energy with an energy density $\\epsilon_\\mathrm{vac}$ that is constant over the cosmic evolution. In this paper here we show, however, that this assumption of constant vacuum energy density is unphysical, since it conflicts with the requirements of cosmic thermodynamics. We start from the total vacuum energy including the negatively valued gravitational binding energy and show that cosmic thermodynamics then requires that the cosmic vacuum energy density can only vary with cosmic scale $R=R(t)$ according to $\\epsilon _\\mathrm{vac}\\sim R^{-\

  20. Cold vacuum drying facility design requirements

    Energy Technology Data Exchange (ETDEWEB)

    IRWIN, J.J.

    1999-07-01

    This document provides the detailed design requirements for the Spent Nuclear Fuel Project Cold Vacuum Drying Facility. Process, safety, and quality assurance requirements and interfaces are specified.

  1. Vacuum Technology Considerations For Mass Metrology

    Science.gov (United States)

    Abbott, Patrick J.; Jabour, Zeina J.

    2011-01-01

    Vacuum weighing of mass artifacts eliminates the necessity of air buoyancy correction and its contribution to the measurement uncertainty. Vacuum weighing is also an important process in the experiments currently underway for the redefinition of the SI mass unit, the kilogram. Creating the optimum vacuum environment for mass metrology requires careful design and selection of construction materials, plumbing components, pumping, and pressure gauging technologies. We review the vacuum technology1 required for mass metrology and suggest procedures and hardware for successful and reproducible operation. PMID:26989593

  2. Vacuum-sealed silicon micromachined pressure sensors

    Energy Technology Data Exchange (ETDEWEB)

    Esashi, Masayoshi [Tohoku Univ., Aobaku, Sendai (Japan); Sugiyama, Susumu [Ritsumeikan Univ., Kusatsu, Shiga (Japan); Ikeda, Kyoichi [Yokogawa Electric Corp., Nagano (Japan); Wang, Y. [Zhejian Univ., Hangzhou (China); Miyashita, Haruzo [Anelva Corp., Yamanashi (Japan)

    1998-08-01

    Considerable progress in silicon pressure sensors has been made in recent years. This paper discusses three types of vacuum-sealed silicon micromachined pressure sensors that represent the present state of the art in this important area. The devices are a capacitive vacuum sensor, a surface-micromachined microdiaphragm pressure sensor, and a resonant pressure sensor. Vacuum sealing for these devices is accomplished using anodic bonding, films deposited using low-pressure chemical vapor deposition, and thermal out-diffusion of hydrogen, respectively. These sensors emphasize high sensitivity; small size, and excellent stability, respectively. The silicon-diaphragm vacuum sensor uses electrostatic force balancing to achieve a wide pressure measurement range.

  3. Attractor Explosions and Catalyzed Vacuum Decay

    Energy Technology Data Exchange (ETDEWEB)

    Green, Daniel; Silverstein, Eva; Starr, David

    2006-05-05

    We present a mechanism for catalyzed vacuum bubble production obtained by combining moduli stabilization with a generalized attractor phenomenon in which moduli are sourced by compact objects. This leads straightforwardly to a class of examples in which the Hawking decay process for black holes unveils a bubble of a different vacuum from the ambient one, generalizing the new endpoint for Hawking evaporation discovered recently by Horowitz. Catalyzed vacuum bubble production can occur for both charged and uncharged bodies, including Schwarzschild black holes for which massive particles produced in the Hawking process can trigger vacuum decay. We briefly discuss applications of this process to the population and stability of metastable vacua.

  4. Vacuum Compatible Percussive Dynamic Cone Penetrometer Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Honeybee Robotics proposes to develop a vacuum compatible percussive dynamic cone penetrometer (PDCP), for establishing soil bin characteristics, with the ultimate...

  5. APS Storage Ring vacuum chamber fabrication

    Energy Technology Data Exchange (ETDEWEB)

    Goeppner, G.A.

    1990-01-01

    The 1104-m circumference Advanced Photon Source Storage Ring Vacuum System is composed of 240 individual sections, which are fabricated from a combination of aluminum extrusions and machined components. The vacuum chambers will have 3800 weld joints, each subject to strict vacuum requirements, as well as a variety of related design criteria. The vacuum criteria and chamber design are reviewed, including a discussion of the weld joint geometries. The critical fabrication process parameters for meeting the design requirements are discussed. The experiences of the prototype chamber fabrication program are presented. Finally, the required facilities preparation for construction activity is briefly described. 6 refs., 6 figs., 1 tab.

  6. Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz) Using Next-Generation Sequencing (NGS)

    Science.gov (United States)

    Bastías, Adriana; Correa, Francisco; Rojas, Pamela; Almada, Rubén; Muñoz, Carlos; Sagredo, Boris

    2016-01-01

    Maqui (Aristotelia chilensis [Molina] Stunz) is a small dioecious tree native to South America with edible fruit characterized by very high antioxidant capacity and anthocyanin content. To preserve maqui as a genetic resource it is essential to study its genetic diversity. However, the complete genome is unknown and only a few gene sequences are available in databases. Simple sequence repeats (SSR) markers, which are neutral, co-dominant, reproducible and highly variable, are desirable to support genetic studies in maqui populations. By means of identification and characterization of microsatellite loci from a maqui genotype, using 454 sequencing technology, we develop a set of SSR for this species. Obtaining a total of 165,043 shotgun genome sequences, with an average read length of 387 bases, we covered 64 Mb of the maqui genome. Reads were assembled into 4,832 contigs, while 98,546 reads remained as singletons, generating a total of 103,378 consensus genomic sequences. A total of 24,494 SSR maqui markers were identified. Of them, 15,950 SSR maqui markers were classified as perfects. The most common SSR motifs were dinucleotide (31%), followed by tetranucleotide (26%) and trinucleotide motifs (24%). The motif AG/CT (28.4%) was the most abundant, while the motif AC (89 bp) was the largest. Eleven polymorphic SSRs were selected and used to analyze a population of 40 maqui genotypes. Polymorphism information content (PIC) ranged from 0.117 to 0.82, with an average of 0.58. Non-significant groups were observed in the maqui population, showing a panmictic genetic structure. In addition, we also predicted 11150 putative genes and 3 microRNAs (miRNAs) in maqui sequences. This results, including partial sequences of genes, some miRNAs and SSR markers from high throughput next generation sequencing (NGS) of maqui genomic DNA, constitute the first platform to undertake genetic and molecular studies of this important species. PMID:27459734

  7. Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz Using Next-Generation Sequencing (NGS.

    Directory of Open Access Journals (Sweden)

    Adriana Bastías

    Full Text Available Maqui (Aristotelia chilensis [Molina] Stunz is a small dioecious tree native to South America with edible fruit characterized by very high antioxidant capacity and anthocyanin content. To preserve maqui as a genetic resource it is essential to study its genetic diversity. However, the complete genome is unknown and only a few gene sequences are available in databases. Simple sequence repeats (SSR markers, which are neutral, co-dominant, reproducible and highly variable, are desirable to support genetic studies in maqui populations. By means of identification and characterization of microsatellite loci from a maqui genotype, using 454 sequencing technology, we develop a set of SSR for this species. Obtaining a total of 165,043 shotgun genome sequences, with an average read length of 387 bases, we covered 64 Mb of the maqui genome. Reads were assembled into 4,832 contigs, while 98,546 reads remained as singletons, generating a total of 103,378 consensus genomic sequences. A total of 24,494 SSR maqui markers were identified. Of them, 15,950 SSR maqui markers were classified as perfects. The most common SSR motifs were dinucleotide (31%, followed by tetranucleotide (26% and trinucleotide motifs (24%. The motif AG/CT (28.4% was the most abundant, while the motif AC (89 bp was the largest. Eleven polymorphic SSRs were selected and used to analyze a population of 40 maqui genotypes. Polymorphism information content (PIC ranged from 0.117 to 0.82, with an average of 0.58. Non-significant groups were observed in the maqui population, showing a panmictic genetic structure. In addition, we also predicted 11150 putative genes and 3 microRNAs (miRNAs in maqui sequences. This results, including partial sequences of genes, some miRNAs and SSR markers from high throughput next generation sequencing (NGS of maqui genomic DNA, constitute the first platform to undertake genetic and molecular studies of this important species.

  8. Advanced light source vacuum policy and vacuum guidelines for beamlines and experiment endstations

    Energy Technology Data Exchange (ETDEWEB)

    Hussain, Z.

    1995-08-01

    The purpose of this document is to: (1) Explain the ALS vacuum policy and specifications for beamlines and experiment endstations. (2) Provide guidelines related to ALS vacuum policy to assist in designing beamlines which are in accordance with ALS vacuum policy. This document supersedes LSBL-116. The Advanced Light Source is a third generation synchrotron radiation source whose beam lifetime depends on the quality of the vacuum in the storage ring and the connecting beamlines. The storage ring and most of the beamlines share a common vacuum and are operated under ultra-high-vacuum (UHV) conditions. All endstations and beamline equipment must be operated so as to avoid contamination of beamline components, and must include proper safeguards to protect the storage ring vacuum from an accidental break in the beamline or endstation vacuum systems. The primary gas load during operation is due to thermal desorption and electron/photon induced desorption of contaminants from the interior of the vacuum vessel and its components. The desorption rates are considerably higher for hydrocarbon contamination, thus considerable emphasis is placed on eliminating these sources of contaminants. All vacuum components in a beamline and endstation must meet the ALS vacuum specifications. The vacuum design of both beamlines and endstations must be approved by the ALS Beamline Review Committee (BRC) before vacuum connections to the storage ring are made. The vacuum design is first checked during the Beamline Design Review (BDR) held before construction of the beamline equipment begins. Any deviation from the ALS vacuum specifications must be approved by the BRC prior to installation of the equipment on the ALS floor. Any modification that is incorporated into a vacuum assembly without the written approval of the BRC is done at the user`s risk and may lead to rejection of the whole assembly.

  9. Advanced light source vacuum policy and vacuum guidelines for beamlines and experiment endstations

    Energy Technology Data Exchange (ETDEWEB)

    Hussain, Z.

    1995-08-01

    The purpose of this document is to: (1) Explain the ALS vacuum policy and specifications for beamlines and experiment endstations. (2) Provide guidelines related to ALS vacuum policy to assist in designing beamlines which are in accordance with ALS vacuum policy. This document supersedes LSBL-116. The Advanced Light Source is a third generation synchrotron radiation source whose beam lifetime depends on the quality of the vacuum in the storage ring and the connecting beamlines. The storage ring and most of the beamlines share a common vacuum and are operated under ultra-high-vacuum (UHV) conditions. All endstations and beamline equipment must be operated so as to avoid contamination of beamline components, and must include proper safeguards to protect the storage ring vacuum from an accidental break in the beamline or endstation vacuum systems. The primary gas load during operation is due to thermal desorption and electron/photon induced desorption of contaminants from the interior of the vacuum vessel and its components. The desorption rates are considerably higher for hydrocarbon contamination, thus considerable emphasis is placed on eliminating these sources of contaminants. All vacuum components in a beamline and endstation must meet the ALS vacuum specifications. The vacuum design of both beamlines and endstations must be approved by the ALS Beamline Review Committee (BRC) before vacuum connections to the storage ring are made. The vacuum design is first checked during the Beamline Design Review (BDR) held before construction of the beamline equipment begins. Any deviation from the ALS vacuum specifications must be approved by the BRC prior to installation of the equipment on the ALS floor. Any modification that is incorporated into a vacuum assembly without the written approval of the BRC is done at the user`s risk and may lead to rejection of the whole assembly.

  10. The quantum vacuum in electromagnetic fields: From the Heisenberg-Euler effective action to vacuum birefringence

    CERN Document Server

    Karbstein, Felix

    2016-01-01

    The focus of these lectures is on the quantum vacuum subjected to classical electromagnetic fields. To this end we explicitly derive the renowned Heisenberg-Euler effective action in constant electromagnetic fields in a rather pedagogical and easy to conceive way. As an application, we use it to study vacuum birefringence constituting one of the most promising optical signatures of quantum vacuum nonlinearity.

  11. Pseudo-redundant vacuum energy

    CERN Document Server

    Batra, Puneet; Hui, Lam; Kabat, Daniel

    2008-01-01

    We discuss models that can account for today's dark energy. The underlying cosmological constant may be Planck scale but starts as a redundant coupling which can be eliminated by a field redefinition. The observed vacuum energy arises when the redundancy is explicitly broken, say by a non-minimal coupling to curvature. We give a recipe for constructing models, including R + 1/R type models, that realize this mechanism and satisfy all solar system constraints on gravity. A similar model, based on Gauss-Bonnet gravity, provides a technically natural explanation for dark energy and exhibits an interesting see-saw behavior: a large underlying cosmological constant gives rise to both low and high curvature solutions. Such models could be statistically favored in the string landscape.

  12. Gravitational Correction to Vacuum Polarization

    CERN Document Server

    Jentschura, U D

    2015-01-01

    We consider the gravitational correction to (electronic) vacuum polarization in the presence of a gravitational background field. The Dirac propagators for the virtual fermions are modified to include the leading gravitational correction (potential term) which corresponds to a coordinate-dependent fermion mass. The mass term is assumed to be uniform over a length scale commensurate with the virtual electron-positron pair. The on-mass shell renormalization condition ensures that the gravitational correction vanishes on the mass shell of the photon, i.e., the speed of light is unaffected by the quantum field theoretical loop correction, in full agreement with the equivalence principle. Nontrivial corrections are obtained for off-shell, virtual photons. We compare our findings to other works on generalized Lorentz transformations and combined quantum-electrodynamic gravitational corrections to the speed of light which have recently appeared in the literature.

  13. False vacuum as an unstable state

    Science.gov (United States)

    Urbanowski, K.

    2016-11-01

    Calculations performed within the Standard Model suggest that the electroweak vacuum is unstable if MH Higgs particle). LHC discovery of the Higgs boson indicates that MH ≃ 125 GeV. So the vacuum in our Universe may be unstable. We analyze properties of unstable vacuum states from the point of view of the quantum theory. At asymptotically late times the survival probability as a function of time t has an inverse power-like form. We show that at this time region the energy of the false vacuum states tends to the energy of the true vacuum state as 1/t2 for t → ∞. This means that the energy density in the unstable vacuum state should have analogous properties and hence the cosmological constant Λ = Λ(t) too. So Λ in the Universe with the unstable vacuum should have a form of the sum of the "bare" cosmological constant and of the term of a type 1/t^2:Λ (t) ≡ Λbare + d/t^2, (where Λbare is the cosmological constant for the Universe with the true vacuum).

  14. Probing QED Vacuum with Heavy Ions

    CERN Document Server

    Rafelski, Johann; Müller, Berndt; Reinhardt, Joachim; Greiner, Walter

    2016-01-01

    We recall how nearly half a century ago the proposal was made to explore the structure of the quantum vacuum using slow heavy-ion collisions. Pursuing this topic we review the foundational concept of spontaneous vacuum decay accompanied by observable positron emission in heavy-ion collisions and describe the related theoretical developments in strong fields QED.

  15. Decoherence of quantum states in QCD vacuum

    Science.gov (United States)

    Kuvshinov, V.; Bagashov, E.

    2017-09-01

    The stochastic vacuum of quantum chromodynamics is used as an environment for quarks considered as color state vectors. It is shown that during interaction with the stochastic vacuum information of the quark color state is lost with time (decoherence of the quark state vector occurs), which effectively means that it is impossible to observe the quark as a free color particle (confinement).

  16. LEP vacuum chamber cross-section

    CERN Multimedia

    1987-01-01

    This diagram shows the layout of the vacuum chambers used at LEP, which was in operation at CERN between 1989 and 2000. Vacuum chambers are necessary in accelerators to prevent unwanted interactions that can destabilise the beam. The pump on the right sucks air out of the chamber allowing the beam to progress with minimal interactions.

  17. AA, vacuum tank for stochastic precooling

    CERN Multimedia

    1979-01-01

    The vaccum tank in which the fast stochastic precooling kicker was installed. It is clad with heating jackets for bake-out to 200 deg C, indispensable for reaching the operational vacuum of 7E-11 Torr. Alain Poncet, responsible for AA vacuum, is looking on. See also 7910268, 8002234.

  18. Silicates materials of high vacuum technology

    CERN Document Server

    Espe, Werner

    2013-01-01

    Materials of High Vacuum Technology, Volume 2: Silicates covers silicate insulators of special importance to vacuum technology. The book discusses the manufacture, composition, and physical and chemical properties of technical glasses, quartz glass, quartzware, vycor glass, ceramic materials, mica, and asbestos.

  19. Vacuum Lightcone Fluctuations in a Dielectric

    CERN Document Server

    Bessa, C H G; Ford, L H; Svaiter, N F

    2014-01-01

    A model for observable effects of electromagnetic vacuum fluctuations is presented. The model involves a probe pulse which traverses a slab of nonlinear optical material with a nonzero second order polarizability. We argue that the pulse interacts with the ambient vacuum fluctuations of other modes of the quantized electric field, and these vacuum fluctuations cause variations in the flight time of the pulse through the material. The geometry of the slab of material defines a sampling function for the quantized electric field, which in turn determines that vacuum modes whose wavelengths are of the order of the thickness of the slab give the dominant contribution. Some numerical estimates are made, which indicate that fractional fluctuations in flight time of the order of $10^{-9}$ are possible in realistic situations. The model presented here is both an illustration of a physical effect of vacuum fluctuations, and an analog model for the lightcone fluctuations predicted by quantum gravity.

  20. Mechanics and Physics of Precise Vacuum Mechanisms

    CERN Document Server

    Deulin, E. A; Panfilov, Yu V; Nevshupa, R. A

    2010-01-01

    In this book the Russian expertise in the field of the design of precise vacuum mechanics is summarized. A wide range of physical applications of mechanism design in electronic, optical-electronic, chemical, and aerospace industries is presented in a comprehensible way. Topics treated include the method of microparticles flow regulation and its determination in vacuum equipment and mechanisms of electronics; precise mechanisms of nanoscale precision based on magnetic and electric rheology; precise harmonic rotary and not-coaxial nut-screw linear motion vacuum feedthroughs with technical parameters considered the best in the world; elastically deformed vacuum motion feedthroughs without friction couples usage; the computer system of vacuum mechanisms failure predicting. This English edition incorporates a number of features which should improve its usefulness as a textbook without changing the basic organization or the general philosophy of presentation of the subject matter of the original Russian work. Exper...

  1. Testing statistics of the CMB B -mode polarization toward unambiguously establishing quantum fluctuation of the vacuum

    Science.gov (United States)

    Shiraishi, Maresuke; Hikage, Chiaki; Namba, Ryo; Namikawa, Toshiya; Hazumi, Masashi

    2016-08-01

    The B -mode polarization in the cosmic microwave background (CMB) anisotropies at large angular scales provides compelling evidence for the primordial gravitational waves (GWs). It is often stated that a discovery of the GWs establishes the quantum fluctuation of vacuum during the cosmic inflation. Since the GWs could also be generated by source fields, however, we need to check if a sizable signal exists due to such source fields before reaching a firm conclusion when the B mode is discovered. Source fields of particular types can generate non-Gaussianity (NG) in the GWs. Testing statistics of the B mode is a powerful way of detecting such NG. As a concrete example, we show a model in which gauge field sources chiral GWs via a pseudoscalar coupling and forecast the detection significance at the future CMB satellite LiteBIRD. Effects of residual foregrounds and lensing B mode are both taken into account. We find the B -mode bispectrum "BBB" is in particular sensitive to the source-field NG, which is detectable at LiteBIRD with a >3 σ significance. Therefore the search for the BBB will be indispensable toward unambiguously establishing quantum fluctuation of vacuum when the B mode is discovered. We also introduced the Minkowski functional to detect the NGs. While we find that the Minkowski functional is less efficient than the harmonic-space bispectrum estimator, it still serves as a useful cross-check. Finally, we also discuss the possibility of extracting clean information on parity violation of GWs and new types of parity-violating observables induced by lensing.

  2. Wireless Integrated Microelectronic Vacuum Sensor System

    Science.gov (United States)

    Krug, Eric; Philpot, Brian; Trott, Aaron; Lawrence, Shaun

    2013-01-01

    NASA Stennis Space Center's (SSC's) large rocket engine test facility requires the use of liquid propellants, including the use of cryogenic fluids like liquid hydrogen as fuel, and liquid oxygen as an oxidizer (gases which have been liquefied at very low temperatures). These fluids require special handling, storage, and transfer technology. The biggest problem associated with transferring cryogenic liquids is product loss due to heat transfer. Vacuum jacketed piping is specifically designed to maintain high thermal efficiency so that cryogenic liquids can be transferred with minimal heat transfer. A vacuum jacketed pipe is essentially two pipes in one. There is an inner carrier pipe, in which the cryogenic liquid is actually transferred, and an outer jacket pipe that supports and seals the vacuum insulation, forming the "vacuum jacket." The integrity of the vacuum jacketed transmission lines that transfer the cryogenic fluid from delivery barges to the test stand must be maintained prior to and during engine testing. To monitor the vacuum in these vacuum jacketed transmission lines, vacuum gauge readings are used. At SSC, vacuum gauge measurements are done on a manual rotation basis with two technicians, each using a handheld instrument. Manual collection of vacuum data is labor intensive and uses valuable personnel time. Additionally, there are times when personnel cannot collect the data in a timely fashion (i.e., when a leak is detected, measurements must be taken more often). Additionally, distribution of this data to all interested parties can be cumbersome. To simplify the vacuum-gauge data collection process, automate the data collection, and decrease the labor costs associated with acquiring these measurements, an automated system that monitors the existing gauges was developed by Invocon, Inc. For this project, Invocon developed a Wireless Integrated Microelectronic Vacuum Sensor System (WIMVSS) that provides the ability to gather vacuum

  3. Apparatus For Metal/Inert-Gas Welding In Vacuum

    Science.gov (United States)

    Stocks, C. O.

    1994-01-01

    Metal/inert-gas welding-torch assembly operates in vacuum. Plasma generated in interior chamber and focused onto workpiece in vacuum. Pinch rollers feed wire to weld puddle. Controlled flow of plasma reduces dispersal in vacuum, preventing extinction.

  4. Exploring the genes of yerba mate (Ilex paraguariensis A. St.-Hil. by NGS and de novo transcriptome assembly.

    Directory of Open Access Journals (Sweden)

    Humberto J Debat

    Full Text Available Yerba mate (Ilex paraguariensis A. St.-Hil. is an important subtropical tree crop cultivated on 326,000 ha in Argentina, Brazil and Paraguay, with a total yield production of more than 1,000,000 t. Yerba mate presents a strong limitation regarding sequence information. The NCBI GenBank lacks an EST database of yerba mate and depicts only 80 DNA sequences, mostly uncharacterized. In this scenario, in order to elucidate the yerba mate gene landscape by means of NGS, we explored and discovered a vast collection of I. paraguariensis transcripts. Total RNA from I. paraguariensis was sequenced by Illumina HiSeq-2000 obtaining 72,031,388 pair-end 100 bp sequences. High quality reads were de novo assembled into 44,907 transcripts encompassing 40 million bases with an estimated coverage of 180X. Multiple sequence analysis allowed us to predict that yerba mate contains ∼ 32,355 genes and 12,551 gene variants or isoforms. We identified and categorized members of more than 100 metabolic pathways. Overall, we have identified ∼ 1,000 putative transcription factors, genes involved in heat and oxidative stress, pathogen response, as well as disease resistance and hormone response. We have also identified, based in sequence homology searches, novel transcripts related to osmotic, drought, salinity and cold stress, senescence and early flowering. We have also pinpointed several members of the gene silencing pathway, and characterized the silencing effector Argonaute1. We predicted a diverse supply of putative microRNA precursors involved in developmental processes. We present here the first draft of the transcribed genomes of the yerba mate chloroplast and mitochondrion. The putative sequence and predicted structure of the caffeine synthase of yerba mate is presented. Moreover, we provide a collection of over 10,800 SSR accessible to the scientific community interested in yerba mate genetic improvement. This contribution broadly expands the limited knowledge

  5. NGS-based BRCA1/2 mutation testing of high-grade serous ovarian cancer tissue: results and conclusions of the first international round robin trial.

    Science.gov (United States)

    Endris, Volker; Stenzinger, Albrecht; Pfarr, Nicole; Penzel, Roland; Möbs, Markus; Lenze, Dido; Darb-Esfahani, Silvia; Hummel, Michael; Sabine-Merkelbach-Bruse; Jung, Andreas; Lehmann, Ulrich; Kreipe, Hans; Kirchner, Thomas; Büttner, Reinhard; Jochum, Wolfram; Höfler, Gerald; Dietel, Manfred; Weichert, Wilko; Schirmacher, Peter

    2016-06-01

    With the approval of olaparib as monotherapy treatment in platinum-sensitive, relapsed high-grade serous ovarian cancer by the European Medical Agency (EMA), comprehensive genotyping of BRCA1 and BRCA2 in tumor tissue has become a mandatory pre-therapeutic test. This requires significant advances in routine tumor test methodologies due to the large size of both genes and the lack of mutational hot spots. Classical focused screening approaches, like Sanger sequencing, do not allow for a sensitive, rapid, and economic analysis of tumor tissue. Next-generation sequencing (NGS) approaches employing targeted panels for BRCA1/2 to interrogate formalin-fixed and paraffin-embedded tumor samples from either surgical resection or biopsy specimens can overcome these limitations. Although focused NGS methods have been implemented by few centers in routine molecular diagnostics for the analysis of some druggable oncogenic mutations, the reliable diagnostic testing of the entire coding regions of BRCA1 and BRCA2 was a new challenge requiring extensive technological improvement and quality management. Here, we describe the implementation and results of the first round robin trial for BRCA1/2 mutation testing in tumor tissue that was conducted in central Europe on May 2015, shortly after the approval and prior to the official release of olaparib. The high success rate of 81 % (21/26 test centers) demonstrates that BRCA1/2 multicenter mutation testing is well feasible in FFPE tumor tissue, extending to other tumor entities beyond ovarian cancer. The high number of test centers passing the trial demonstrates the success of the concerted efforts by German, Swiss, and Austrian pathology centers to ensure quality-controlled NGS-based testing and proves the potential of this technology in routine molecular pathology. On the basis of our results, we provide recommendations for predictive testing of tumor tissue for BRCA1/2 to clinical decision making in ovarian cancer patients.

  6. Vacuum system for the SAMURAI spectrometer

    Energy Technology Data Exchange (ETDEWEB)

    Shimizu, Y., E-mail: yshimizu@ribf.riken.jp [RIKEN Nishina Center, Wako, Saitama 351-0198 (Japan); Otsu, H. [RIKEN Nishina Center, Wako, Saitama 351-0198 (Japan); Kobayashi, T. [Department of Physics, Tohoku University, Aoba, Sendai 980-8578 (Japan); Kubo, T.; Motobayashi, T.; Sato, H.; Yoneda, K. [RIKEN Nishina Center, Wako, Saitama 351-0198 (Japan)

    2013-12-15

    Highlights: • The paper describes the vacuum system for the SAMURAI spectrometer including its beam line and the SAMURAI vacuum chamber. • The windows for detecting neutrons and charged particles are mounted on the SAMURAI vacuum chamber. • The deflection and induced stress of the windows were calculated by ANSYS program code. • The windows were constructed and examined with the test chamber before mounting on the SAMURAI vacuum chamber. • The SAMURAI was kept on a few Pa of the pressure during the experiment without any problems caused by these windows. -- Abstract: The first commissioning experiment of the SAMURAI spectrometer and its beam line was performed in March, 2012. The vacuum system for the SAMURAI spectrometer includes its beam line and the SAMURAI vacuum chamber with the windows for detecting neutrons and charged particles. The window for neutrons was made of stainless steel with a thickness of 3 mm and was designed with a shape of partial cylinder to support itself against the atmospheric pressure. The window for charged particles was of the combination of Kevlar and Mylar with the thickness of 280 and 75 μm, respectively. The pressure in the vacuum system was at a few Pa throughout the commissioning experiment.

  7. Baking results of KSTAR vacuum vessel

    Energy Technology Data Exchange (ETDEWEB)

    Kim, S. T.; Kim, Y. J.; Kim, K. M.; Im, D. S.; Joung, N. Y.; Yang, H. L.; Kim, Y. S.; Kwon, M. [National Fusion Research Institute, Daejeon (Korea, Republic of)

    2009-05-15

    The Korea Superconducting Tokamak Advanced Research (KSTAR) is an advanced superconducting tokamak designed to establish a scientific and technological basis for an attractive fusion reactor. The fusion energy in the tokamak device is released through fusion reactions of light atoms such as deuterium or helium in hot plasma state, of which temperature reaches several hundreds of millions Celsius. The high temperature plasma is created in the vacuum vessel that provides ultra high vacuum status. Accordingly, it is most important for the vacuum condition to keep clean not only inner space but also surface of the vacuum vessel to make high quality plasma. There are two methods planned to clean the wall surface of the KSTAR vacuum vessel. One is surface baking and the other is glow discharge cleaning (GDC). To bake the vacuum vessel, De-Ionized (DI) water is heated to 130 .deg. C and circulated in the passage between double walls of the vacuum vessel (VV) in order to bake the surface. The GDC operation uses hydrogen and inert gas discharges. In this paper, general configuration and brief introduction of the baking result will be reported.

  8. Comments on the Vacuum Orientations in QCD

    CERN Document Server

    Huang, Z; Wu, D D; Huang, Zheng

    1992-01-01

    We study the QCD vacuum orientation angles in correlation with the strong CP phases. A vacuum alignment equation of the dynamical chiral symmetry breaking is derived based on the anomalous Ward identity. It is emphasized that a chiral rotation of the quark field causes a change of the vacuum orientation and a change in the definition of the light pseudoscalar generators. As an illustration of the idea, $\\h\\rightarrow 2\\p$ decays are carefully studied in different chiral frames. Contrary to the claim in Ref.[7], the $\\theta$-term does not directly contribute to the CP-violating processes.

  9. Some aspects of vacuum ultraviolet radiation physics

    CERN Document Server

    Damany, Nicole; Vodar, Boris

    2013-01-01

    Some Aspects of Vacuum Ultraviolet Radiation Physics presents some data on the state of research in vacuum ultraviolet radiation in association with areas of physics. Organized into four parts, this book begins by elucidating the optical properties of solids in the vacuum ultraviolet region (v.u.v.), particularly the specific methods of determination of optical constants in v.u.v., the properties of metals, and those of ionic insulators. Part II deals with molecular spectroscopy, with emphasis on the spectra of diatomic and simple polyatomic molecules, paraffins, and condensed phases. Part III

  10. Vacuum system for the SAMURAI spectrometer

    Science.gov (United States)

    Shimizu, Y.; Otsu, H.; Kobayashi, T.; Kubo, T.; Motobayashi, T.; Sato, H.; Yoneda, K.

    2013-12-01

    The first commissioning experiment of the SAMURAI spectrometer and its beam line was performed in March, 2012. The vacuum system for the SAMURAI spectrometer includes its beam line and the SAMURAI vacuum chamber with the windows for detecting neutrons and charged particles. The window for neutrons was made of stainless steel with a thickness of 3 mm and was designed with a shape of partial cylinder to support itself against the atmospheric pressure. The window for charged particles was of the combination of Kevlar and Mylar with the thickness of 280 and 75 μm, respectively. The pressure in the vacuum system was at a few Pa throughout the commissioning experiment.

  11. Scalar and tensor perturbation in vacuum inflation

    CERN Document Server

    Huang, Zhiqiang

    2016-01-01

    It was recently proposed that a small true vacuum universe can inflate spontaneously, in principle. In this paper, this model is completed with experimental results. There should be matter creation in vacuum inflation due to quantum fluctuations, and the matter created will influence the inflation simultaneously. We derive cosmological perturbations in this vacuum inflation model and express them with Hubble flow-functions. By comparing the perturbations with the experimental results, we can determine all the parameters in this model. Finally, we calculate the evolution of the matter density with the determined parameters and show that the matter produced in inflation roughly fits the observations at present.

  12. Extra Dimensions and Vacuum Dark Energy Models

    Institute of Scientific and Technical Information of China (English)

    CHEN Chi-Yi; SHEN You-Gen

    2004-01-01

    @@ The role of vacuum energy or cosmological constant in cosmology is discussed in a kind of nontrivial higherdimensional model. Under the framework of Einstein's gravity, we obtain the corresponding equations of motion and find that the cosmological constant and vacuum energy in the full regime does not drive its acceleration, but decelerates the expansion of the universe. The dimension of space is required to be n = 3 if we regard vacuum energy or cosmological constant as the candidate to drive the accelerated expansion of the universe.

  13. Vacuum engineering, calculations, formulas, and solved exercises

    CERN Document Server

    Berman, Armand

    1992-01-01

    This book was written with two main objectives in mind-to summarize and organize the vast material of vacuum technology in sets of useful formulas, and to provide a collection of worked out exercises showing how to use these formulas for solving technological problems. It is an ideal reference source for those with little time to devote to a full mathematical treatment of the many problems issued in vacuum practice, but who have a working knowledge of the essentials of vacuum technology, elementary physics, and mathematics. This time saving book employs a problem-solving approach throughout, p

  14. On Puthoff's Semiclassical Electron and Vacuum Energy

    Science.gov (United States)

    Pereira, N. R.

    2016-09-01

    A possible connection between a point electron and vacuum energy was recently claimed by Puthoff (Int. J. Theor. Phys. 46, 3005 (2007)). He envisions a point electron as an ideally conducting spherical shell with a distributed charge on the surface, in equilibrium with the radiation pressure from electromagnetic vacuum fluctuations on the outside, and claims that his analysis demonstrates the reality of high-energy-density vacuum fluctuation fields. The present paper finds, instead, that the analysis is meaningless without specific knowledge on the cutoff frequency that is a free parameter in the model.

  15. The fine art of preparing a vacuum

    CERN Multimedia

    2006-01-01

    The vacuum chambers, or beam pipes, of the LHC experiments are located right at the interface between the detectors and the accelerator, and are therefore crucial to the LHC project as a whole. In this domain, the ALICE and CMS experiments have just passed an important milestone, with the completion of the first of CMS's two end-cap vacuum chambers, together with the completion and bakeout of an 18-metre section of the ALICE vacuum chamber. These complex projects, for which CERN's AT/VAC Group is responsible, involved dozens of people over a number of years.

  16. Vacuum Furnace - Integrated "Sub zero" Treatment

    Institute of Scientific and Technical Information of China (English)

    B. Zieger; Hubert Schulte

    2004-01-01

    The vacuum heat treatment with overpressure gas quenching is more and more accepted due to considerable advantages compared to the traditional oil and salt bath processes. Continuous further developments and new concepts like multi-directional cooling systems, a separate quenching chamber and "sub zero" systems lead towards an oxidation free and low distortion vacuum heat treatment for a broad range of parts and materials. Short and energy saving processes guarantee a high economic efficiency and environmental compatibility.The "sub zero" system which is integrated into the standard vacuum furnace achieves a heat treatment result with a high conversion of retained austenite in fully automatic hardening and tempering processes.

  17. Quark Virtuality and QCD Vacuum Condensates

    Institute of Scientific and Technical Information of China (English)

    ZHOU Li-Juan; MA Wei-Xing

    2004-01-01

    @@ Based on the Dyson-Schwinger equations (DSEs) in the ‘rainbow' approximation, we investigate the quark virtuality in the vacuum state and quantum-chromodynamics (QCD) vacuum condensates. In particular, we calculate the local quark vacuum condensate and quark-gluon mixed condensates, and then the virtuality of quark. The calculated quark virtualities are λ2u,d = 0.7 GeV2 for u, d quarks, and 2s 1.6 GeV2 for s quark.Our theoretical predictions are consistent with empirical values used in QCD sum rules, and also fit to lattice QCD predictions.

  18. Inflaton Decay in an Alpha Vacuum

    CERN Document Server

    Naidu, S; Naidu, Siddartha; Holman, Richard

    2004-01-01

    We study the alpha vacua of de Sitter space by considering the decay rate of the inflaton field coupled to a scalar field placed in an alpha vacuum. We find an {\\em alpha dependent} Bose enhancement relative to the Bunch-Davies vacuum and, surprisingly, no non-renormalizable divergences. We also consider a modified alpha dependent time ordering prescription for the Feynman propagator and show that it leads to an alpha independent result. This result suggests that it may be possible to calculate in any alpha vacuum if we employ the appropriate causality preserving prescription.

  19. Sequestering effects on and of vacuum decay

    CERN Document Server

    Kaloper, Nemanja; Stefanyszyn, David

    2016-01-01

    We consider phase transitions and their contributions to vacuum energy in the manifestly local theory of vacuum energy sequestering. We demonstrate that the absence of instabilities imposes constraints on the couplings of gravitating and non-gravitating sectors, which can be satisfied in a large class of models. We further show by explicit construction that the vacuum energy contributions to the effective cosmological constant in the descendant vacua are generically strongly suppressed by the ratios of spacetime volumes of parent and descendant geometries. This means that the cosmological constant in de Sitter descendant vacua remains insensitive to phase transitions which may have occurred in the course of its cosmic history.

  20. Gravitational Baryogenesis in Running Vacuum models

    CERN Document Server

    Oikonomou, V K; Nunes, Rafael C

    2016-01-01

    We study the gravitational baryogenesis mechanism for generating baryon asymmetry in the context of running vacuum models. Regardless if these models can produce a viable cosmological evolution, we demonstrate that they produce a non-zero baryon-to-entropy ratio even if the Universe is filled with conformal matter. This is a sound difference between the running vacuum gravitational baryogenesis and the Einstein-Hilbert one, since in the latter case, the predicted baryon-to-entropy ratio is zero. We consider two running vacuum models and show that the resulting baryon-to-entropy ratio is compatible with the observational data.

  1. Report of the Synchrotron Radiation Vacuum Workshop

    Energy Technology Data Exchange (ETDEWEB)

    Avery, R.T.

    1984-06-01

    The Synchrotron Radiation Vacuum Workshop was held to consider two vacuum-related problems that bear on the design of storage rings and beam lines for synchrotron radiation facilities. These problems are gas desorption from the vacuum chamber walls and carbon deposition on optical components. Participants surveyed existing knowledge on these topics and recommended studies that should be performed as soon as possible to provide more definitive experimental data on these topics. This data will permit optimization of the final design of the Advanced Light Source (ALS) and its associated beam lines. It also should prove useful for other synchrotron radiation facilities as well.

  2. Sequestering effects on and of vacuum decay

    Science.gov (United States)

    Kaloper, Nemanja; Padilla, Antonio; Stefanyszyn, David

    2016-07-01

    We consider phase transitions and their contributions to vacuum energy in the manifestly local theory of vacuum energy sequestering. We demonstrate that the absence of instabilities imposes constraints on the couplings of gravitating and nongravitating sectors, which can be satisfied in a large class of models. We further show by explicit construction that the vacuum energy contributions to the effective cosmological constant in the descendant vacua are generically strongly suppressed by the ratios of space-time volumes of parent and descendant geometries. This means that the cosmological constant in de Sitter descendant vacua remains insensitive to phase transitions which may have occurred in the course of its cosmic history.

  3. Vacuum-sealed casting process under pressure

    Institute of Scientific and Technical Information of China (English)

    LI Chen-xi; GUO Tai-ming; WU Chun-jing; WANG Hong

    2006-01-01

    A new casting method, the vacuum-sealed mold casting under pressure, has been developed, and thin wall iron castings with high precision and smooth surface have been produced successfully with this casting method. The experimental results show that the liquid iron has a very excellent filling ability because a high negative pressure is formed in the mold cavity during filling process. The vacuum-sealed mold under pressure has very high compressive strength greater than 650 kPa, which is 3-4 times as high as that of the molds produced by high-pressure molding process or vacuum-sealed molding process.

  4. Gases and vacua handbook of vacuum physics

    CERN Document Server

    Beck, A H

    2013-01-01

    Handbook of Vacuum Physics, Volume 1: Gases and Vacua presents three major topics, which are the fourth to sixth parts of this volume. These topics are the remarks on units of physical quantities; kinetic theory of gases and gaseous flow; and theory of vacuum diffusion pumps. The first topic aims to present concisely the significance of units of physical quantities, catering the need and interest of those who take measurements and make calculations in different fields of vacuum sciences. The technique and applications of this particular topic are also provided. The second main topic focuses sp

  5. Vacuum pyrolysis of waste print circuit board

    Institute of Scientific and Technical Information of China (English)

    GAN Ge; CHEN Lie-qiang; PENG Shao-hong; CAI Ming-zhao

    2005-01-01

    Waste print circuit board containing 11.38% Br was pyrolyzed in vacuum.Thermal stability of waste print circuit board was studied under vacuum condition by thermo-gravimetry(TG). Vacuum pyrolysis of WPCB was studied emphasizing on the kinetics of WPCB pyrolysis reactions. Based on the TG results, a kinetic model was proposed. Kinetic parameters were calculated for reaction with this model including all stages of decomposition. The average activation energy is 68 k J/mol with reaction order 3. These findings provide new insights into the WPCB thermal decomposition and useful data for rational design and operation of pyrolysis.

  6. Feasibility assessment of vacuum cooling followed by immersion vacuum cooling on water-cooked pork.

    Science.gov (United States)

    Dong, Xiaoguang; Chen, Hui; Liu, Yi; Dai, Ruitong; Li, Xingmin

    2012-01-01

    Vacuum cooling followed by immersion vacuum cooling was designed to cool water-cooked pork (1.5±0.05 kg) compared with air blast cooling (4±0.5°C, 2 m/s), vacuum cooling (10 mbar) and immersion vacuum cooling. This combined cooling method was: vacuum cooling to an intermediate temperature of 25°C and then immersion vacuum cooling with water of 10°C to the final temperature of 10°C. It was found that the cooling loss of this combined cooling method was significantly lower (Pvacuum cooling. This combined cooling was faster (Pvacuum cooling in terms of cooling rate. Moreover, the pork cooled by combined cooling method had significant differences (P<0.05) in water content, color and shear force. Copyright © 2011 Elsevier Ltd. All rights reserved.

  7. Is there vacuum when there is mass? Vacuum and non-vacuum solutions for massive gravity

    Science.gov (United States)

    Martín-Moruno, Prado; Visser, Matt

    2013-08-01

    Massive gravity is a theory which has a tremendous amount of freedom to describe different cosmologies, but at the same time, the various solutions one encounters must fulfil some rather nontrivial constraints. Most of the freedom comes not from the Lagrangian, which contains only a small number of free parameters (typically three depending on counting conventions), but from the fact that one is in principle free to choose the reference metric almost arbitrarily—which effectively introduces a non-denumerable infinity of free parameters. In the current paper, we stress that although changing the reference metric would lead to a different cosmological model, this does not mean that the dynamics of the universe can be entirely divorced from its matter content. That is, while the choice of reference metric certainly influences the evolution of the physically observable foreground metric, the effect of matter cannot be neglected. Indeed the interplay between matter and geometry can be significantly changed in some specific models; effectively since the graviton would be able to curve the spacetime by itself, without the need of matter. Thus, even the set of vacuum solutions for massive gravity can have significant structure. In some cases, the effect of the reference metric could be so strong that no conceivable material content would be able to drastically affect the cosmological evolution. Dedicated to the memory of Professor Pedro F González-Díaz

  8. SHINE Vacuum Pump Test Verification

    Energy Technology Data Exchange (ETDEWEB)

    Morgan, Gregg A; Peters, Brent

    2013-09-30

    Normetex pumps used world-wide for tritium service are no longer available. DOE and other researchers worldwide have spent significant funds characterizing this pump. Identification of alternate pumps is required for performance and compatibility with tritium gas. Many of the pumps that could be used to meet the functional performance requirements (e.g. pressure and flow conditions) of the Normetex pump have features that include the use of polymers or oils and greases that are not directly compatible with tritium service. This study assembles a test system to determine the flow characteristics for candidate alternate pumps. These tests are critical to the movement of tritium through the SHINE Tritium Purification System (TPS). The purpose of the pump testing is two-fold: (1) obtain baseline vacuum pump characteristics for an alternate (i.e. ''Normetex replacement'') pump intended for use in tritium service; and (2) verify that low pressure hydrogen gas can be transported over distances up to 300 feet by the candidate pumps. Flow rates and nominal system pressures have been identified for the SHINE Mo-99 production process Tritium Purification System (TPS). To minimize the line sizes for the transfer of low pressure tritium from the Neutron Driver Accelerator System (NDAS) to the primary processing systems in the TPS, a ''booster'' pump has been located near the accelerator in the design. A series of pump tests were performed at various configurations using hydrogen gas (no tritium) to ensure that this concept is practical and maintains adequate flow rates and required pressures. This report summarizes the results of the tests that have been performed using various pump configurations. The current design of the Tritium Purification System requires the ''booster'' pump to discharge to or to be backed by another vacuum pump. Since Normetex pumps are no longer manufactured, a commercially available Edwards

  9. Vacuum condensates and `ether-drift' experiments

    OpenAIRE

    Consoli, M.; Pagano, A.; Pappalardo, L.

    2003-01-01

    The idea of a `condensed' vacuum state is generally accepted in modern elementary particle physics. We argue that this should motivate a new generation of precise `ether-drift' experiments with present-day technology.

  10. Stability of relativistic plasma-vacuum interfaces

    CERN Document Server

    Trakhinin, Yuri

    2010-01-01

    We study the plasma-vacuum interface problem in relativistic magnetohydrodynamics for the case when the plasma density does not go to zero continuously, but jumps. Unlike the nonrelativistic version of this problem, we have to assume that the plasma expands into the vacuum (otherwise, the problem is underdetermined). We show that even if this necessary condition is satisfied the planar interface can be still violently unstable. By using a suitable secondary symmetrization of the Maxwell equations in vacuum, we find a sufficient condition that precludes violent instabilities. Under this condition we derive a basic a priori estimate in the anisotropic weighted Sobolev space $H^1_*$ for the variable coefficients linearized problem for nonplanar plasma-vacuum interfaces and prove the well-posedness of this problem.

  11. Source replenishment device for vacuum deposition

    Science.gov (United States)

    Hill, Ronald A.

    1988-01-01

    A material source replenishment device for use with a vacuum deposition apparatus. The source replenishment device comprises an intermittent motion producing gear arrangement disposed within the vacuum deposition chamber. An elongated rod having one end operably connected to the gearing arrangement is provided with a multiarmed head at the opposite end disposed adjacent the heating element of the vacuum deposition apparatus. An inverted U-shaped source material element is releasably attached to the outer end of each arm member whereby said multiarmed head is moved to locate a first of said material elements above said heating element, whereupon said multiarmed head is lowered to engage said material element with the heating element and further lowered to release said material element on the heating element. After vaporization of said material element, second and subsequent material elements may be provided to the heating element without the need for opening the vacuum deposition apparatus to the atmosphere.

  12. Cold vacuum drying facility design requirements

    Energy Technology Data Exchange (ETDEWEB)

    Irwin, J.J.

    1997-09-24

    This release of the Design Requirements Document is a complete restructuring and rewrite to the document previously prepared and released for project W-441 to record the design basis for the design of the Cold Vacuum Drying Facility.

  13. Observation of subluminal twisted light in vacuum

    CERN Document Server

    Bouchard, Frédéric; Mand, Harjaspreet; Boyd, Robert W; Karimi, Ebrahim

    2015-01-01

    Einstein's theory of relativity establishes the speed of light in vacuum, c, as a fundamental constant. However, the speed of light pulses can be altered significantly in dispersive materials. While significant control can be exerted over the speed of light in such media, no experimental demonstration of altered light speeds has hitherto been achieved in vacuum for ``twisted'' optical beams. We show that ``twisted'' light pulses exhibit subluminal velocities in vacuum, being slowed by 0.1\\% relative to c. This work does not challenge relativity theory, but experimentally supports a body of theoretical work on the counterintuitive vacuum group velocities of twisted pulses. These results are particularly important given recent interest in applications of twisted light to quantum information, communication and quantum key distribution.

  14. FRIB driver linac vacuum model and benchmarks

    CERN Document Server

    Durickovic, Bojan; Kersevan, Roberto; Machicoane, Guillaume

    2014-01-01

    The Facility for Rare Isotope Beams (FRIB) is a superconducting heavy-ion linear accelerator that is to produce rare isotopes far from stability for low energy nuclear science. In order to achieve this, its driver linac needs to achieve a very high beam current (up to 400 kW beam power), and this requirement makes vacuum levels of critical importance. Vacuum calculations have been carried out to verify that the vacuum system design meets the requirements. The modeling procedure was benchmarked by comparing models of an existing facility against measurements. In this paper, we present an overview of the methods used for FRIB vacuum calculations and simulation results for some interesting sections of the accelerator. (C) 2013 Elsevier Ltd. All rights reserved.

  15. Fate of Electroweak Vacuum during Preheating

    CERN Document Server

    Ema, Yohei; Nakayama, Kazunori

    2016-01-01

    Our electroweak vacuum may be metastable in light of the current experimental data of the Higgs/top quark mass. If this is really the case, high-scale inflation models require a stabilization mechanism of our vacuum during inflation. A possible candidate is the Higgs-inflaton/-curvature coupling because it induces an additional mass term to the Higgs during the slow roll regime. However, after the inflation, the additional mass term oscillates, and it can potentially destabilize our electroweak vacuum via production of large Higgs fluctuations during the inflaton oscillation era. In this paper, we study whether or not the Higgs-inflaton/-curvature coupling can save our vacuum by properly taking account of Higgs production during the preheating stage. We put upper bounds on the Higgs-inflaton/-curvature coupling, and discuss possible dynamics that might relax them.

  16. Vapor-barrier Vacuum Isolation System

    Science.gov (United States)

    Weinstein, Leonard M. (Inventor); Taminger, Karen M. (Inventor)

    2014-01-01

    A system includes a collimated beam source within a vacuum chamber, a condensable barrier gas, cooling material, a pump, and isolation chambers cooled by the cooling material to condense the barrier gas. Pressure levels of each isolation chamber are substantially greater than in the vacuum chamber. Coaxially-aligned orifices connect a working chamber, the isolation chambers, and the vacuum chamber. The pump evacuates uncondensed barrier gas. The barrier gas blocks entry of atmospheric vapor from the working chamber into the isolation chambers, and undergoes supersonic flow expansion upon entering each isolation chamber. A method includes connecting the isolation chambers to the vacuum chamber, directing vapor to a boundary with the working chamber, and supersonically expanding the vapor as it enters the isolation chambers via the orifices. The vapor condenses in each isolation chamber using the cooling material, and uncondensed vapor is pumped out of the isolation chambers via the pump.

  17. LCLS XTOD Tunnel Vacuum System (XVTS)

    Energy Technology Data Exchange (ETDEWEB)

    Beale, R; Duffy, P; Kishiyama, K; Mckernan, M; McMahon, D; Lewis, S; Trent, J; Tung, L; Shen, S

    2005-11-04

    The vacuum system of the XVTS (X-Ray Vacuum Transport System) for the LCLS (Linac Coherent Light Source) XTOD (X-ray Transport, Optics and Diagnostics) system has been analyzed and configured by the Lawrence Livermore National Laboratory's NTED (New Technologies Engineering Division) as requested by the SLAC/LCLS program. The system layout, detailed analyses and selection of the vacuum components for the XTOD tunnel section are presented in this preliminary design report. The vacuum system was analyzed and optimized using a coupled gas load balance model of sub-volumes of the components to be evacuated. Also included are the plans for procurement, mechanical integration, and the cost estimates.

  18. Physical Vacuum Properties and Internal Space Dimension

    CERN Document Server

    Gorbatenko, M V

    2004-01-01

    The paper addresses matrix spaces, whose properties and dynamics are determined by Dirac matrices in Riemannian spaces of different dimension and signature. Among all Dirac matrix systems there are such ones, which nontrivial scalar, vector or other tensors cannot be made up from. These Dirac matrix systems are associated with the vacuum state of the matrix space. The simplest vacuum system realization can be ensured using the orthonormal basis in the internal matrix space. This vacuum system realization is not however unique. The case of 7-dimensional Riemannian space of signature 7(-) is considered in detail. In this case two basically different vacuum system realizations are possible: (1) with using the orthonormal basis; (2) with using the oblique-angled basis, whose base vectors coincide with the simple roots of algebra E_{8}. Considerations are presented, from which it follows that the least-dimension space bearing on physics is the Riemannian 11-dimensional space of signature 1(-)& 10(+). The consi...

  19. Analytical and numerical tools for vacuum systems

    CERN Document Server

    Kersevan, R

    2007-01-01

    Modern particle accelerators have reached a level of sophistication which require a thorough analysis of all their sub-systems. Among the latter, the vacuum system is often a major contributor to the operating performance of a particle accelerator. The vacuum engineer has nowadays a large choice of computational schemes and tools for the correct analysis, design, and engineering of the vacuum system. This paper is a review of the different type of algorithms and methodologies which have been developed and employed in the field since the birth of vacuum technology. The different level of detail between simple back-of-the-envelope calculations and more complex numerical analysis is discussed by means of comparisons. The domain of applicability of each method is discussed, together with its pros and cons.

  20. Re-circulating linac vacuum system

    Energy Technology Data Exchange (ETDEWEB)

    Wells, Russell P.; Corlett, John N.; Zholents, Alexander A.

    2003-05-09

    The vacuum system for a proposed 2.5 GeV, 10{Mu}A recirculating linac synchrotron light source [1] is readily achievable with conventional vacuum hardware and established fabrication processes. Some of the difficult technical challenges associated with synchrotron light source storage rings are sidestepped by the relatively low beam current and short beam lifetime requirements of a re-circulating linac. This minimal lifetime requirement leads directly to relatively high limits on the background gas pressure through much of the facility. The 10{Mu}A average beam current produces very little synchrotron radiation induced gas desorption and thus the need for an ante-chamber in the vacuum chamber is eliminated. In the arc bend magnets, and the insertion devices, the vacuum chamber dimensions can be selected to balance the coherent synchrotron radiation and resistive wall wakefield effects, while maintaining the modest limits on the gas pressure and minimal outgassing.

  1. True random numbers from amplified quantum vacuum

    CERN Document Server

    Jofre, M; Steinlechner, F; Anzolin, G; Torres, J P; Mitchell, M W; Pruneri, V; 10.1364/OE.19.020665

    2011-01-01

    Random numbers are essential for applications ranging from secure communications to numerical simulation and quantitative finance. Algorithms can rapidly produce pseudo-random outcomes, series of numbers that mimic most properties of true random numbers while quantum random number generators (QRNGs) exploit intrinsic quantum randomness to produce true random numbers. Single-photon QRNGs are conceptually simple but produce few random bits per detection. In contrast, vacuum fluctuations are a vast resource for QRNGs: they are broad-band and thus can encode many random bits per second. Direct recording of vacuum fluctuations is possible, but requires shot-noise-limited detectors, at the cost of bandwidth. We demonstrate efficient conversion of vacuum fluctuations to true random bits using optical amplification of vacuum and interferometry. Using commercially-available optical components we demonstrate a QRNG at a bit rate of 1.11 Gbps. The proposed scheme has the potential to be extended to 10 Gbps and even up t...

  2. Electrostatic particle collection in vacuum

    Science.gov (United States)

    Afshar-Mohajer, Nima; Damit, Brian; Wu, Chang-Yu; Sorloaica-Hickman, Nicoleta

    2011-09-01

    Lunar grains accumulate charges due to solar-based ionizing radiations, and the repelling action of like-charged particles causes the levitation of lunar dust. The lunar dust deposit on sensitive and costly surfaces of investigative equipment is a serious concern in lunar explorations. Inspired by electrostatic precipitators (ESPs), the Electrostatic Lunar Dust Collector (ELDC) was proposed for collecting already charged lunar dust particles to prevent the lunar dust threat. As the conditions for terrestrial counterparts are not valid in the lunar environment, equations developed for terrestrial devices yield incorrect predictions in lunar application. Hence, a mathematical model was developed for the ELDC operating in vacuum to determine its collection efficiency. The ratios of electrical energy over potential energy, kinetic energy over potential energy and the ratio of ELDC dimensions were identified to be the key dimensionless parameters. Sensitivity analyses of the relevant parameters showed that depending on ELDC orientation, smaller particles would be collected more easily at vertical orientation, whereas larger particles were easier to collect in a horizontal ELDC configuration. In the worst case scenario, the electrostatic field needed to be 10 times stronger in the vertical mode in order to adequately collect larger particles. The collection efficiency was very sensitive to surface potential of lunar dust and it reached the maximum when surface potential was between 30 and 120 V. Except for regions of the lunar day side with surface potential close to zero, providing 1 kV ( E = 20 kV m -1) with the ELDC was more than enough for collecting all the particles in the most critical orientation. The needed field strength was about 4000 times less than that for repelling 1-μm size particles already settled on the surfaces. The analysis shows that the ELDC offers a viable solution for lunar dust control due to its effectiveness, ease of cleaning and low voltage

  3. Vacuum level effects on gait characteristics for unilateral transtibial amputees with elevated vacuum suspension.

    Science.gov (United States)

    Xu, Hang; Greenland, Kasey; Bloswick, Donald; Zhao, Jie; Merryweather, Andrew

    2017-03-01

    The elevated vacuum suspension system has demonstrated unique health benefits for amputees, but the effect of vacuum pressure values on gait characteristics is still unclear. The purpose of this study was to investigate the effects of elevated vacuum levels on temporal parameters, kinematics and kinetics for unilateral transtibial amputees. Three-dimensional gait analysis was conducted in 9 unilateral transtibial amputees walking at a controlled speed with five vacuum levels ranging from 0 to 20inHg, and also in 9 able-bodied subjects walking at self-preferred speed. Repeated ANOVA and Dunnett's t-test were performed to determine the effect of vacuum level and limb for within subject and between groups. The effect of vacuum level significantly affected peak hip external rotation and external knee adduction moment. Maximum braking and propulsive ground reaction forces generally increased for the residual limb and decreased for the intact limb with increasing vacuum. Additionally, the intact limb experienced an increased loading due to gait asymmetry for several variables. There was no systematic vacuum level effect on gait. Higher vacuum levels, such as 15 and 20inHg, were more comfortable and provided some relief to the intact limb, but may also increase the risk of osteoarthritis of the residual limb due to the increased peak external hip and knee adduction moments. Very low vacuum should be avoided because of the negative effects on gait symmetry. A moderate vacuum level at 15inHg is suggested for unilateral transtibial amputees with elevated vacuum suspension. Copyright © 2017 Elsevier Ltd. All rights reserved.

  4. Cosmic String Created from Vacuum Fluctuaions

    OpenAIRE

    Popov, Arkadii

    1998-01-01

    The possibility of the cosmic string creation by the vacuum fluctuations of quantum fields in the self-consistent semiclassical theory of gravity is discussed. We use the approximate method for obtaining vacuum expectation value of the renormalized stress-energy tensor of conformally invariant quantum fields in static cylindrically symmetric spacetimes. We have obtained the particular solutions of Einstein equations for the different boundary conditions at the cylinder symmetry axis.

  5. Vacuum decay in an interacting multiverse

    CERN Document Server

    Robles-Pérez, S; Bastos, C; Bertolami, O

    2015-01-01

    We examine a new multiverse scenario in which the component universes interact. We focus our attention to the process of "true" vacuum nucleation in the false vacuum within one single element of the multiverse. It is shown that the interactions lead to a collective behaviour that might lead, under specific conditions, to a pre-inflationary phase and ensued distinguishable imprints in the comic microwave background radiation.

  6. Vacuum decay in an interacting multiverse

    Energy Technology Data Exchange (ETDEWEB)

    Robles-Pérez, S. [Centro de Física “Miguel Catalán”, Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 121, 28006 Madrid (Spain); Estación Ecológica de Biocosmología, Pedro de Alvarado, 14, 06411 Medellín (Spain); Alonso-Serrano, A. [Centro de Física “Miguel Catalán”, Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 121, 28006 Madrid (Spain); Estación Ecológica de Biocosmología, Pedro de Alvarado, 14, 06411 Medellín (Spain); School of Mathematics and Statistics, Victoria University of Wellington, PO Box 600, Wellington 6140 (New Zealand); Bastos, C., E-mail: catarina.bastos@tecnico.ulisboa.pt [GoLP, Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Avenida Rovisco Pais 1, 1049-001 Lisboa (Portugal); Bertolami, O. [Departamento de Física e Astronomia and Centro de Física do Porto, Faculdade de Ciências da Universidade do Porto, Rua do Campo Alegre 687, 4169-007 Porto (Portugal)

    2016-08-10

    We examine a new multiverse scenario in which the component universes interact. We focus our attention to the process of “true” vacuum nucleation in the false vacuum within one single element of the multiverse. It is shown that the interactions lead to a collective behavior that might lead, under specific conditions, to a pre-inflationary phase and ensued distinguishable imprints in the comic microwave background radiation.

  7. Vacuum decay in an interacting multiverse

    Science.gov (United States)

    Robles-Pérez, S.; Alonso-Serrano, A.; Bastos, C.; Bertolami, O.

    2016-08-01

    We examine a new multiverse scenario in which the component universes interact. We focus our attention to the process of "true" vacuum nucleation in the false vacuum within one single element of the multiverse. It is shown that the interactions lead to a collective behavior that might lead, under specific conditions, to a pre-inflationary phase and ensued distinguishable imprints in the comic microwave background radiation.

  8. Vacuum decay in an interacting multiverse

    Directory of Open Access Journals (Sweden)

    S. Robles-Pérez

    2016-08-01

    Full Text Available We examine a new multiverse scenario in which the component universes interact. We focus our attention to the process of “true” vacuum nucleation in the false vacuum within one single element of the multiverse. It is shown that the interactions lead to a collective behavior that might lead, under specific conditions, to a pre-inflationary phase and ensued distinguishable imprints in the comic microwave background radiation.

  9. Stabilization flyuorytopodibnoyi structure in oxide vacuum condensate

    Directory of Open Access Journals (Sweden)

    О.М. Заславський

    2006-01-01

    Full Text Available  The influence of the oxide-stabilizer content, M'-cation radius and film deposition temperature on the stabilization of the fluorite-like solid solutions in the zirconium and hafnium oxides-based vacuum condensates, obtained by Laser-evaporating method, was investigated. The optimum parameters of the coatication of the isotropic thermostable coverings was determined. This results were explained by using of the high-speed condensation in vacuum theory.

  10. Progress of HIRFL-CSR Vacuum System

    Institute of Scientific and Technical Information of China (English)

    YangXiaotian; ZhangJunhui; MengJun; ZhangXijun; ZhangXiping; HouShengjun; HuZhenjun; NiuZhiwei; HaoBingan; WuHuimin

    2003-01-01

    The HIRFL-CSR vacuum system progressed steadily during the past year. The 2/3rd of CSR, injection beam line (SSC-CSR, m)'s vacuum chambers were installed in site in Jan. 2003 (Fig.l). The beam diagnostic devices were inserted in the chambers as well. The pressures in unbaked section were kept in 1~5×10-7 Pa range and in baked section were 2~5×10-9 Pa.

  11. Structure of Nonlocal Vacuum Condensate of Quarks

    Institute of Scientific and Technical Information of China (English)

    周丽娟; 马维兴

    2003-01-01

    The Dyson-Schwinger formalism is used to derive a fully dressed quark propagator. By use of the derived form of the quark propagator, the structure of non-local quark vacuum condensate is studied, and the values of local quark vacuum condensate as well as quark gluon mixed condensate are calculated. The theoretical predictions are in good agreement with the empirical one used commonly in the literature.

  12. Vacuum decay in an interacting multiverse

    OpenAIRE

    Robles-Pérez, S.; Alonso-Serrano, A.; Bastos, C.; Bertolami, O.

    2016-01-01

    We examine a new multiverse scenario in which the component universes interact. We focus our attention to the process of "true" vacuum nucleation in the false vacuum within one single element of the multiverse. It is shown that the interactions lead to a collective behaviour that might lead, under specific conditions, to a pre-inflationary phase and ensued distinguishable imprints in the comic microwave background radiation.

  13. An Improved Vacuum System for COLLAPS

    CERN Document Server

    Bruchim, Daniel

    2015-01-01

    The COLLAPS beamline in general, and the current ROC setup specifically, has very many valves and pumps. We require a safety system in order to prevent action that would cause damage to vacuum components, i.e. opening a valve between atmosphere and vacuum. The system needs to be adaptable (programmable) to the various possible setups of COLLAPS and needs to be as robust as possible in order to prevent damage of equipment.

  14. Vacuum gas carburizing – fate of hydrocarbons

    OpenAIRE

    Khan, Rafi Ullah

    2008-01-01

    This work focuses on gaseous reactive flows in ideal and non-ideal reactors. The objective of this research is the development of models for the numerical simulation of homogeneous reactive flows under vacuum carburizing conditions of steel with propane and acetylene. These models can be used for further investigations of heterogeneous reactions during vacuum carburizing of steel to predict the carbon flux on the complex shaped steel parts to understand and, eventually, optimize the behavior ...

  15. Impact of NGS in the medical sciences: Genetic syndromes with an increased risk of developing cancer as an example of the use of new technologies.

    Science.gov (United States)

    Lapunzina, Pablo; López, Rocío Ortiz; Rodríguez-Laguna, Lara; García-Miguel, Purificación; Martínez, Augusto Rojas; Martínez-Glez, Víctor

    2014-03-01

    The increased speed and decreasing cost of sequencing, along with an understanding of the clinical relevance of emerging information for patient management, has led to an explosion of potential applications in healthcare. Currently, SNP arrays and Next-Generation Sequencing (NGS) technologies are relatively new techniques used to scan genomes for gains and losses, losses of heterozygosity (LOH), SNPs, and indel variants as well as to perform complete sequencing of a panel of candidate genes, the entire exome (whole exome sequencing) or even the whole genome. As a result, these new high-throughput technologies have facilitated progress in the understanding and diagnosis of genetic syndromes and cancers, two disorders traditionally considered to be separate diseases but that can share causal genetic alterations in a group of developmental disorders associated with congenital malformations and cancer risk. The purpose of this work is to review these syndromes as an example of a group of disorders that has been included in a panel of genes for NGS analysis. We also highlight the relationship between development and cancer and underline the connections between these syndromes.

  16. Impact of NGS in the medical sciences: genetic syndromes with an increased risk of developing cancer as an example of the use of new technologies

    Directory of Open Access Journals (Sweden)

    Pablo Lapunzina

    2014-01-01

    Full Text Available The increased speed and decreasing cost of sequencing, along with an understanding of the clinical relevance of emerging information for patient management, has led to an explosion of potential applications in healthcare. Currently, SNP arrays and Next-Generation Sequencing (NGS technologies are relatively new techniques used to scan genomes for gains and losses, losses of heterozygosity (LOH, SNPs, and indel variants as well as to perform complete sequencing of a panel of candidate genes, the entire exome (whole exome sequencing or even the whole genome. As a result, these new high-throughput technologies have facilitated progress in the understanding and diagnosis of genetic syndromes and cancers, two disorders traditionally considered to be separate diseases but that can share causal genetic alterations in a group of developmental disorders associated with congenital malformations and cancer risk. The purpose of this work is to review these syndromes as an example of a group of disorders that has been included in a panel of genes for NGS analysis. We also highlight the relationship between development and cancer and underline the connections between these syndromes.

  17. Next-generation sequencing (NGS) as a fast molecular diagnosis tool for left ventricular noncompaction in an infant with compound mutations in the MYBPC3 gene.

    Science.gov (United States)

    Schaefer, Elise; Helms, Pauline; Marcellin, Luc; Desprez, Philippe; Billaud, Philippe; Chanavat, Valérie; Rousson, Robert; Millat, Gilles

    2014-03-01

    Left ventricular noncompaction (LVNC) is a clinically heterogeneous disorder characterized by a trabecular meshwork and deep intertrabecular myocardial recesses that communicate with the left ventricular cavity. LVNC is classified as a rare genetic cardiomyopathy. Molecular diagnosis is a challenge for the medical community as the condition shares morphologic features of hypertrophic and dilated cardiomyopathies. Several genetic causes of LVNC have been reported, with variable modes of inheritance, including autosomal dominant and X-linked inheritance, but relatively few responsible genes have been identified. In this report, we describe a case of a severe form of LVNC leading to death at 6 months of life. NGS sequencing using a custom design for hypertrophic cardiomyopathy panel allowed us to identify compound heterozygosity in the MYBPC3 gene (p.Lys505del, p.Pro955fs) in 3 days, confirming NGS sequencing as a fast molecular diagnosis tool. Other studies have reported neonatal presentation of cardiomyopathies associated with compound heterozygous or homozygous MYBPC3 mutations. In this family and in families in which parental truncating MYBPC3 mutations are identified, preimplantation or prenatal genetic screening should be considered as these genotypes leads to neonatal mortality and morbidity.

  18. Impact of NGS in the medical sciences: Genetic syndromes with an increased risk of developing cancer as an example of the use of new technologies

    Science.gov (United States)

    Lapunzina, Pablo; López, Rocío Ortiz; Rodríguez-Laguna, Lara; García-Miguel, Purificación; Martínez, Augusto Rojas; Martínez-Glez, Víctor

    2014-01-01

    The increased speed and decreasing cost of sequencing, along with an understanding of the clinical relevance of emerging information for patient management, has led to an explosion of potential applications in healthcare. Currently, SNP arrays and Next-Generation Sequencing (NGS) technologies are relatively new techniques used to scan genomes for gains and losses, losses of heterozygosity (LOH), SNPs, and indel variants as well as to perform complete sequencing of a panel of candidate genes, the entire exome (whole exome sequencing) or even the whole genome. As a result, these new high-throughput technologies have facilitated progress in the understanding and diagnosis of genetic syndromes and cancers, two disorders traditionally considered to be separate diseases but that can share causal genetic alterations in a group of developmental disorders associated with congenital malformations and cancer risk. The purpose of this work is to review these syndromes as an example of a group of disorders that has been included in a panel of genes for NGS analysis. We also highlight the relationship between development and cancer and underline the connections between these syndromes. PMID:24764758

  19. Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies

    Directory of Open Access Journals (Sweden)

    Alexandre G. de Brevern

    2015-01-01

    Full Text Available Sequencing the human genome began in 1994, and 10 years of work were necessary in order to provide a nearly complete sequence. Nowadays, NGS technologies allow sequencing of a whole human genome in a few days. This deluge of data challenges scientists in many ways, as they are faced with data management issues and analysis and visualization drawbacks due to the limitations of current bioinformatics tools. In this paper, we describe how the NGS Big Data revolution changes the way of managing and analysing data. We present how biologists are confronted with abundance of methods, tools, and data formats. To overcome these problems, focus on Big Data Information Technology innovations from web and business intelligence. We underline the interest of NoSQL databases, which are much more efficient than relational databases. Since Big Data leads to the loss of interactivity with data during analysis due to high processing time, we describe solutions from the Business Intelligence that allow one to regain interactivity whatever the volume of data is. We illustrate this point with a focus on the Amadea platform. Finally, we discuss visualization challenges posed by Big Data and present the latest innovations with JavaScript graphic libraries.

  20. Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies.

    Science.gov (United States)

    de Brevern, Alexandre G; Meyniel, Jean-Philippe; Fairhead, Cécile; Neuvéglise, Cécile; Malpertuy, Alain

    2015-01-01

    Sequencing the human genome began in 1994, and 10 years of work were necessary in order to provide a nearly complete sequence. Nowadays, NGS technologies allow sequencing of a whole human genome in a few days. This deluge of data challenges scientists in many ways, as they are faced with data management issues and analysis and visualization drawbacks due to the limitations of current bioinformatics tools. In this paper, we describe how the NGS Big Data revolution changes the way of managing and analysing data. We present how biologists are confronted with abundance of methods, tools, and data formats. To overcome these problems, focus on Big Data Information Technology innovations from web and business intelligence. We underline the interest of NoSQL databases, which are much more efficient than relational databases. Since Big Data leads to the loss of interactivity with data during analysis due to high processing time, we describe solutions from the Business Intelligence that allow one to regain interactivity whatever the volume of data is. We illustrate this point with a focus on the Amadea platform. Finally, we discuss visualization challenges posed by Big Data and present the latest innovations with JavaScript graphic libraries.

  1. [Identification of key markers of normal and pathogenic microbiota determining health of periodontium by NGS-sequencing 16S-rDNA libraries of periodontal swabs].

    Science.gov (United States)

    Zorina, O A; Petrukhina, N B; Basova, A A; Shibaeva, A V; Trubnikova, E V; Shevelev, A B

    2014-01-01

    By using NGS-sequencing libraries of DNA from periodontal swabs with primers specific to V6 region of 16S rDNA prevalence of bacterial genera and species in periodontal microbiota of patients with aggressive periodontitis and healthy donors was analyzed. Six genera of putative periodontal protectors and eight periodontal pathogens were identified with respect to aggressive (but not chronic) periodontitis. Statistically relevant over-colonization by general Porphyromonas, Treponema, Synergistes, Tannerella, Filifactor, Ruminococcus, Parvimonas and Mycoplasma was found to be associated with the condition. From these, only three genera Porphyromonas, Treponema and Tannerella are traditionally considered as periodontal pathogens. Statistically confidential over-colonization by genus Veillonella was found in healthy patients. This genus should be considered as a relevant marker of a healthy periodontium. Genera Streptococcus, Bergeyella, Granulicatella, Kingella and Corynebacterium may be considered as putative periodontal protectors. Comparison of data of NGS-sequencing and real-time PCR demonstrated a good agreement if different PCR efficiency using independent primer pairs is taken into account.

  2. Physical vacuum properties and internal space dimension

    Science.gov (United States)

    Gorbatenko, M. V.; Pushkin, A. V.

    2005-10-01

    The paper addresses matrix spaces, whose properties and dynamics are determined by Dirac matrices in Riemannian spaces of different dimension and signature. Among all Dirac matrix systems there are such ones, which nontrivial scalar, vector or other tensors cannot be made up from. These Dirac matrix systems are associated with the vacuum state of the matrix space. The simplest vacuum system realization can be ensured using the orthonormal basis in the internal matrix space. This vacuum system realization, however, is not unique. The case of 7-dimensional Riemannian space of signature 7(-) is considered in detail. In this case two basically different vacuum system realizations are possible: (1) with using the orthonormal basis; (2) with using the oblique-angled basis, whose base vectors coincide with the simple roots of the Lie algebra E 8. Considerations are presented, from which it follows that the least-dimen-si-on space bearing on physics is the Riemannian 11-dimensional space of signature 1(-)& 10(+). The considerations consist in the condition of maximum vacuum energy density and vacuum fluctuation energy density.

  3. Vacuum Energy and Inflation: 4. An Inflationary Universe

    Science.gov (United States)

    Huggins, Elisha

    2013-01-01

    This is the fourth paper in a series of four. The first paper in the series, "Vacuum Energy and Inflation: 1. A Liter of Vacuum Energy" [EJ1024183] discusses an example of vacuum energy. Vacuum energy is explained as an energy with a negative pressure whose energy density remains constant in an expanding space. Paper 2, "Vacuum…

  4. Vacuum Energy and Inflation: 4. An Inflationary Universe

    Science.gov (United States)

    Huggins, Elisha

    2013-01-01

    This is the fourth paper in a series of four. The first paper in the series, "Vacuum Energy and Inflation: 1. A Liter of Vacuum Energy" [EJ1024183] discusses an example of vacuum energy. Vacuum energy is explained as an energy with a negative pressure whose energy density remains constant in an expanding space. Paper 2, "Vacuum…

  5. Vacuum system of SST-1 Tokamak

    Energy Technology Data Exchange (ETDEWEB)

    Khan, Ziauddin, E-mail: ziauddin@ipr.res.in [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar 382 428 (India); Pathan, Firozkhan; George, Siju; Semwal, Pratibha; Dhanani, Kalpesh; Paravastu, Yuvakiran; Thankey, Prashant; Ramesh, Gattu; Himabindu, Manthena; Pradhan, Subrata [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar 382 428 (India)

    2013-10-15

    Highlights: ► Air leaks developed during ongoing SST-1 cooldown campaign were detected online using RGA. ► The presence of N{sub 2} and O{sub 2} gases with the ratio of their partial pressures with ∼3.81:1 confirmed the air leaks. ► Baking of SST-1 was done efficiently by flowing hot N{sub 2} gas in C-channels welded on inner surfaces without any problem. ► In-house fabricated demountable bull nose couplers were demonstrated for high temperature and pressure applications. ► Cryopumping effect was observed when liquid helium cooled superconducting magnets reached below 63 K. -- Abstract: Vacuum chambers of Steady State Superconducting (SST-1) Tokamak comprises of the vacuum vessel and the cryostat. The plasma will be confined inside the vacuum vessel while the cryostat houses the superconducting magnet systems (TF and PF coils), LN{sub 2} cooled thermal shields and hydraulics for these circuits. The vacuum vessel is an ultra-high (UHV) vacuum chamber while the cryostat is a high-vacuum (HV) chamber. In order to achieve UHV inside the vacuum vessel, it would be baked at 150 °C for longer duration. For this purpose, U-shaped baking channels are welded inside the vacuum vessel. The baking will be carried out by flowing hot nitrogen gas through these channels at 250 °C at 4.5 bar gauge pressure. During plasma operation, the pressure inside the vacuum vessel will be raised between 1.0 × 10{sup −4} mbar and 1.0 × 10{sup −5} mbar using piezoelectric valves and control system. An ultimate pressure of 4.78 × 10{sup −6} mbar is achieved inside the vacuum vessel after 100 h of pumping. The limitation is due to the development of few leaks of the order of 10{sup −5} mbar l/s at the critical locations of the vacuum vessel during baking which was confirmed with the presence of nitrogen gas and oxygen gas with the ratio of ∼3.81:1 indicating air leak. Similarly an ultimate vacuum of 2.24 × 10{sup −5} mbar is achieved inside the cryostat. Baking of the

  6. RELATION BETWEEN FUNCTION AND FORM IN VACUUM CLEANERS DESIGN

    Directory of Open Access Journals (Sweden)

    RADU Ștefan

    2015-11-01

    Full Text Available The paper analyses how robotic vacuum cleaner works, describing their cleaning capabilities and additional features. The paper illustrates advantages of using robotic vacuum cleaners that have intelligent programming and a vacuum cleaning system, the components of a robotic vacuum cleaner. The paper develops aspects concerning to create 2D scale models for the evaluation of specific features of the new components for a prototype robotic vacuum cleaner.

  7. RELATION BETWEEN FUNCTION AND FORM IN VACUUM CLEANERS DESIGN

    OpenAIRE

    RADU Ștefan

    2015-01-01

    The paper analyses how robotic vacuum cleaner works, describing their cleaning capabilities and additional features. The paper illustrates advantages of using robotic vacuum cleaners that have intelligent programming and a vacuum cleaning system, the components of a robotic vacuum cleaner. The paper develops aspects concerning to create 2D scale models for the evaluation of specific features of the new components for a prototype robotic vacuum cleaner.

  8. Insertion Test of the Inner Vacuum Tank inside the Outer Vacuum Tank

    CERN Multimedia

    B. LEVESY

    2002-01-01

    Photos of the insertion test held on 13th of june 2002. The CMS Magnet inner Vacuum Tank is inserted inside the outer vacuum tank. False thermal shield have been placed on the inner vaccum tank to simulated the coil outer thermal shield. This test is a training for the 2 final insertions.

  9. Cold Vacuum Drying (CVD) Set Point Determination

    Energy Technology Data Exchange (ETDEWEB)

    PHILIPP, B.L.

    2000-09-04

    The Safety Class Instrumentation and Control (SCIC) system provides active detection and response to process anomalies that, if unmitigated, would result in a safety event. Specifically, actuation of the SCIC system includes two portions. The portion which isolates the MCO and initiates the safety-class helium (SCHe) purge, and the portion which detects and stops excessive heat input to the MCO annulus on high Tempered Water (TW) inlet temperature. For the MCO isolation and purge, the SCIC receives MCO pressure (both positive pressure and vacuum), helium flow rate, bay high temperature switch status, seismic trip status, and time-under-vacuum trips signals. The SCIC system will isolate the MCO and start an SCHe system purge if any of the following occur. (1) Isolation and purge from one of the SCHe ''isolation'' and ''purge'' buttons is manually initiated (administratively controlled). (2) The first vacuum cycle exceeds 8 hours at vacuum, or any subsequent vacuum cycle exceeds 4 hours at vacuum without re-pressurizing the MCO for a minimum of 4 hours. (This is referred to as the 8/4/4 requirement and provides thermal equilibrium within the MCO.) (3) MCO is below atmospheric pressure and the helium flow is below the minimum required to keep hydrogen less than 4% by volume. (When MCO pressure is below 12 torr there is insufficient hydrogen to exceed the 4% level and therefore no purge is required. A five minute time delay on low flow allows flow to be stopped in order to reach < 12 torr.) (4) The duration for the transition from above atmospheric pressure to vacuum (time to reach pressure below -11.7 psig [{approx}155 torr]) exceeds 5 minutes. (5) The duration for the transition from vacuum (below -11.1 psig [{approx}185 torr]) back to pressure [greater than 0.5 psig] exceeds 5 minutes. (6) MCO reaches a vacuum state (<0.5 psig) without an adequate, verified purge volume. (The MCO must be maintained above atmospheric pressure

  10. Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS).

    Science.gov (United States)

    Barbosa, Amanda D; Gofton, Alexander W; Paparini, Andrea; Codello, Annachiara; Greay, Telleasha; Gillett, Amber; Warren, Kristin; Irwin, Peter; Ryan, Una

    2017-01-01

    Infections with Trypanosoma spp. have been associated with poor health and decreased survival of koalas (Phascolarctos cinereus), particularly in the presence of concurrent pathogens such as Chlamydia and koala retrovirus. The present study describes the application of a next-generation sequencing (NGS)-based assay to characterise the prevalence and genetic diversity of trypanosome communities in koalas and two native species of ticks (Ixodes holocyclus and I. tasmani) removed from koala hosts. Among 168 koalas tested, 32.2% (95% CI: 25.2-39.8%) were positive for at least one Trypanosoma sp. Previously described Trypanosoma spp. from koalas were identified, including T. irwini (32.1%, 95% CI: 25.2-39.8%), T. gilletti (25%, 95% CI: 18.7-32.3%), T. copemani (27.4%, 95% CI: 20.8-34.8%) and T. vegrandis (10.1%, 95% CI: 6.0-15.7%). Trypanosoma noyesi was detected for the first time in koalas, although at a low prevalence (0.6% 95% CI: 0-3.3%), and a novel species (Trypanosoma sp. AB-2017) was identified at a prevalence of 4.8% (95% CI: 2.1-9.2%). Mixed infections with up to five species were present in 27.4% (95% CI: 21-35%) of the koalas, which was significantly higher than the prevalence of single infections 4.8% (95% CI: 2-9%). Overall, a considerably higher proportion (79.7%) of the Trypanosoma sequences isolated from koala blood samples were identified as T. irwini, suggesting this is the dominant species. Co-infections involving T. gilletti, T. irwini, T. copemani, T. vegrandis and Trypanosoma sp. AB-2017 were also detected in ticks, with T. gilletti and T. copemani being the dominant species within the invertebrate hosts. Direct Sanger sequencing of Trypanosoma 18S rRNA gene amplicons was also performed and results revealed that this method was only able to identify the genotypes with greater amount of reads (according to NGS) within koala samples, which highlights the advantages of NGS in detecting mixed infections. The present study provides new insights on the

  11. Vacuum Bellows, Vacuum Piping, Cryogenic Break, and Copper Joint Failure Rate Estimates for ITER Design Use

    Energy Technology Data Exchange (ETDEWEB)

    L. C. Cadwallader

    2010-06-01

    The ITER international project design teams are working to produce an engineering design in preparation for construction of the International Thermonuclear Experimental Reactor (ITER) tokamak. During the course of this work, questions have arisen in regard to safety barriers and equipment reliability as important facets of system design. The vacuum system designers have asked several questions about the reliability of vacuum bellows and vacuum piping. The vessel design team has asked about the reliability of electrical breaks and copper-copper joints used in cryogenic piping. Research into operating experiences of similar equipment has been performed to determine representative failure rates for these components. The following chapters give the research results and the findings for vacuum system bellows, power plant stainless steel piping (amended to represent vacuum system piping), cryogenic system electrical insulating breaks, and copper joints.

  12. CERN Vacuum-System Activities during the Long Shutdown 1: The LHC Beam Vacuum

    CERN Document Server

    Baglin, V; Chiggiato, P; Jimenez, JM; Lanza, G

    2014-01-01

    After the Long Shutdown 1 (LS1) and the consolidation of the magnet bus bars, the CERN Large Hadron Collider (LHC) will operate with nominal beam parameters. Larger beam energy, beam intensities and luminosity are expected. Despite the very good performance of the beam vacuum system during the 2010-12 physics run (Run 1), some particular areas require attention for repair, consolidation and upgrade. Among the main activities, a large campaign aiming at the repair of the RF bridges of some vacuum modules is conducted. Moreover, consolidation of the cryogenic beam vacuum systems with burst disk for safety reasons is implemented. In addition, NEG cartridges, NEG coated inserts and new instruments for the vacuum system upgrade are installed. Besides these activities, repair, consolidation and upgrades of other beam equipment such as collimators, kickers and beam instrumentations are carried out. In this paper, the motivation and the description for such activities, together with the expected beam vacuum performa...

  13. Engineering Matter Interactions Using Squeezed Vacuum

    Directory of Open Access Journals (Sweden)

    Sina Zeytinoğlu

    2017-06-01

    Full Text Available Virtually all interactions that are relevant for atomic and condensed matter physics are mediated by quantum fluctuations of the electromagnetic field vacuum. Consequently, controlling the vacuum fluctuations can be used to engineer the strength and the range of interactions. Recent experiments have used this premise to demonstrate novel quantum phases or entangling gates by embedding electric dipoles in photonic cavities or wave guides, which modify the electromagnetic fluctuations. Here, we show theoretically that the enhanced fluctuations in the antisqueezed quadrature of a squeezed vacuum state allow for engineering interactions between electric dipoles without the need for a photonic structure. Thus, the strength and range of the interactions can be engineered in a time-dependent way by changing the spatial profile of the squeezed vacuum in a traveling-wave geometry, which also allows the implementation of chiral dissipative interactions. Using experimentally realized squeezing parameters and including realistic losses, we predict single-atom cooperativities C of up to 10 for the squeezed-vacuum-enhanced interactions.

  14. CSRm Ultra-High Vacuum System

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The new accelerator project ( HIRFL-CSR ) constructed at the Heavy Ion Research Facility in Lanzhou (HIRFL) is approaching completion. It is a multipurpose cooler-storage-ring system [1], consisting of a maim ring (CSRm), an experimental ring (CSRe) and two transfer beam lines. The UHV system of CSRm is the most representative subsystem in the project. To minimize the beam loss due to charge exchange of the heavy ions with the residual gas molecules,the pressure of the CSRm vacuum system should reach 3.5 × 10-9 Pa (N2 equivalent) and the pressure of 8 × 10-10 Pa is expected for very heavy ion such as uranium to make its lifetime longer than 50 s in the ring. Now, the vacuum system of CSRm has been completed and a pressure less than 5 × 10-10 Pa has been obtained. In this paper the layout of the CSRm vacuum system, the vacuum equipment in CSRm, the treatment method for the CSRm vacuum chambers, and the installation and operation of the system will be reported.

  15. Compressed Air/Vacuum Transportation Techniques

    Science.gov (United States)

    Guha, Shyamal

    2011-03-01

    General theory of compressed air/vacuum transportation will be presented. In this transportation, a vehicle (such as an automobile or a rail car) is powered either by compressed air or by air at near vacuum pressure. Four version of such transportation is feasible. In all versions, a ``c-shaped'' plastic or ceramic pipe lies buried a few inches under the ground surface. This pipe carries compressed air or air at near vacuum pressure. In type I transportation, a vehicle draws compressed air (or vacuum) from this buried pipe. Using turbine or reciprocating air cylinder, mechanical power is generated from compressed air (or from vacuum). This mechanical power transferred to the wheels of an automobile (or a rail car) drives the vehicle. In type II-IV transportation techniques, a horizontal force is generated inside the plastic (or ceramic) pipe. A set of vertical and horizontal steel bars is used to transmit this force to the automobile on the road (or to a rail car on rail track). The proposed transportation system has following merits: virtually accident free; highly energy efficient; pollution free and it will not contribute to carbon dioxide emission. Some developmental work on this transportation will be needed before it can be used by the traveling public. The entire transportation system could be computer controlled.

  16. Decay of the Cosmic Vacuum Energy

    CERN Document Server

    Clifton, Timothy

    2014-01-01

    Energy-momentum conservation suggests that a vacuum in thermal equilibrium with a bath of radiation during inflation should gradually diminish the vacuum energy. We find that coupling to a bath of black-body radiation at temperature $T=H/2 \\pi$ requires the Hubble rate, $H$, to evolve as in the "intermediate inflation" scenario, with $H \\propto t^{-1/3}$, rather than as a constant. Such behaviour does not conflict with observations when the vacuum energy is described by a slowly-rolling scalar field, but will change the asymptotic states of the universe. We find that this scenario introduces a curvature singularity at early times. The scale factor takes a finite non-zero value at this singularity, while the energy densities in radiation and the vacuum diverge to positive and negative infinity, respectively. This shows that inflation is possible even when the energy density of the vacuum is large and negative. Furthermore, the introduction of an additional non-interacting perfect fluid into the space-time reve...

  17. Recent advances in vacuum sciences and applications

    Science.gov (United States)

    Mozetič, M.; Ostrikov, K.; Ruzic, D. N.; Curreli, D.; Cvelbar, U.; Vesel, A.; Primc, G.; Leisch, M.; Jousten, K.; Malyshev, O. B.; Hendricks, J. H.; Kövér, L.; Tagliaferro, A.; Conde, O.; Silvestre, A. J.; Giapintzakis, J.; Buljan, M.; Radić, N.; Dražić, G.; Bernstorff, S.; Biederman, H.; Kylián, O.; Hanuš, J.; Miloševič, S.; Galtayries, A.; Dietrich, P.; Unger, W.; Lehocky, M.; Sedlarik, V.; Stana-Kleinschek, K.; Drmota-Petrič, A.; Pireaux, J. J.; Rogers, J. W.; Anderle, M.

    2014-04-01

    Recent advances in vacuum sciences and applications are reviewed. Novel optical interferometer cavity devices enable pressure measurements with ppm accuracy. The innovative dynamic vacuum standard allows for pressure measurements with temporal resolution of 2 ms. Vacuum issues in the construction of huge ultra-high vacuum devices worldwide are reviewed. Recent advances in surface science and thin films include new phenomena observed in electron transport near solid surfaces as well as novel results on the properties of carbon nanomaterials. Precise techniques for surface and thin-film characterization have been applied in the conservation technology of cultural heritage objects and recent advances in the characterization of biointerfaces are presented. The combination of various vacuum and atmospheric-pressure techniques enables an insight into the complex phenomena of protein and other biomolecule conformations on solid surfaces. Studying these phenomena at solid-liquid interfaces is regarded as the main issue in the development of alternative techniques for drug delivery, tissue engineering and thus the development of innovative techniques for curing cancer and cardiovascular diseases. A review on recent advances in plasma medicine is presented as well as novel hypotheses on cell apoptosis upon treatment with gaseous plasma. Finally, recent advances in plasma nanoscience are illustrated with several examples and a roadmap for future activities is presented.

  18. EC6 for Darlington - a managed-enhancements replication project

    Energy Technology Data Exchange (ETDEWEB)

    Soulard, M.R. [Candu Energy Inc., Mississauga, Ontario (Canada)

    2011-07-01

    CANDU 6 design has a well-deserved reputation for lifetime performance and on-time, on-schedule construction. Candu Energy is finalizing development of an upgraded reactor product, the Enhanced CANDU 6 (EC6), which incorporates the CANDU 6's well-proven features, and adds enhancements that make the reactor even more safe and easier to operate. The EC6 is the only mid-sized reactor (700 MWe class) with a proven pedigree that meets modern reactor expectations and regulatory standards. It is sized for smaller grids and also has outstanding fuel-cycle capability. Some of the key features incorporated into the EC6 include increasing the plant's power output, shortening the overall project schedule, addressing obsolescence issues, optimizing maintenance outages and incorporating lessons learnt through feedback obtained from the operating plants. The EC6 utilizes modern computers and a distributed control system housed in an advanced control room which, along with automated testing and on-line diagnostics, make the plant easier and safer to operate, with minimal operator intervention. An array of health monitoring equipment are also installed to foretell impending equipment problems, which can be acted upon, avoiding complications that could result in forced shutdowns. Improvements to the fire protection system and enhanced security features will further protect the assets. Containment and seismic capability are upgraded to meet modern standards. The first deployment of the EC6 is anticipated in Canada; other markets are also being pursued. The EC6 reactor is designed for a target lifetime capacity factor of 92% including 94% year-to-year and a 1% Forced Loss Rate. Since the number and duration of maintenance outages impact plant capacity factors, periodic short duration maintenance outages of less than a month once every 36 months is a key target of the EC6 reactor. This objective is achieved by automating a number of tasks such as shutdown systems testing. The majority of these activities can be undertaken with the reactor at power. Enhancements incorporated into the EC6 design to improve performance and facilitate maintenance include: Use of improved material and plant chemistry specifications based on operating experience from CANDU plants, e.g. life-limiting components such as HTS feeders and headers have been enhanced with higher chromium content to limit the effect of feeder corrosion; Implementation of advanced computer control systems for monitoring, display, diagnostics and annunciation and improvement of configuration management capability; Utilization of SMART CANDU modules for monitoring plant chemistry of systems and components, equipment status monitoring, and providing predictive maintenance capability; Ensuring capability for return to full power on restoration of the electrical grid. The EC6 reactor has the capability to continue operating and delivering house load without connection to the grid, therefore enabling a rapid return to production of power upon reconnection; A maintenance-based design strategy. This program incorporates lessons learned and ensures maintainability of systems and components. It defines an improved maintenance program to ensure plant conditions are diagnosed and maintained within their design performance limits. This results in improved preventive maintenance and reduced forced outages at a rate of less than five days/year; Improved plant maintenance with provisions for electrical, water and air supplies that are built-in for on-power and normal shutdown maintenance; Shielding in radiologically controlled areas is provided to minimize worker exposure and occupational dose; Improved equipment selection and system design based on probabilistic safety evaluations using three-year outage intervals; and, The EC6 design offers a target life of 60 years with one mid-life refurbishment of certain critical equipment, such as the fuel channels and feeders. This objective is achieved by elongating the fuel channel bearings, thickening the pressure tube slightly, increasing the feeder wall thickness, using improved equipment and materials, better plant chemistry, and more active monitoring of critical plant parameters. All life-limiting factors have been evaluated and addressed, supported by extensive studies. By essentially doubling the useful life of the reactor, the plant owners are assured of a long-term supply of their electricity needs with an improved return of assets.

  19. Quality Management of CERN Vacuum Controls

    CERN Document Server

    Antoniotti, F; Fortescue-Beck, E; Gama, J; Gomes, P; Le Roux, P; Pereira, H; Pigny, G

    2014-01-01

    The vacuum controls Section (TE-VSC-ICM) is in charge of the monitoring, maintenance and consolidation of the control systems of all accelerators and detectors in CERN; this represents 6 000 instruments distributed along 128 km of vacuum chambers, often of heterogeneous architectures and of diverse technical generations. In order to improve the efficiency of the services provided by ICM, to vacuum experts and to accelerator operators, a Quality Management Plan is being put into place. The first step was the standardization of the naming convention across different accelerators. The traceability of problems, requests, repairs, and other actions, has also been put into place (VTL). This was combined with the effort to identify each individual device by a coded label, and register it in a central database (MTF). Occurring in parallel, was the gathering of old documents and the centralization of information concerning architectures, procedures, equipment and settings (EDMS). To describe the topology of control c...

  20. Vacuum packaging design and analysis for UFPA

    Science.gov (United States)

    Liu, Dafu; Xu, Qinfei

    2010-10-01

    Uncooled focal plane array (UFPA) has broad application prospects in civilian and space because it's cheaper, more compact and high reliability. Many research institutes and companies have carried out the research of uncooled focal plane array. This paper shows a vacuum package design of UFPA, and its architecture will be given. The assembly is an all-metal vacuum package, which has been proven rugged and reliable. Out-gassing, permeation, evaporator, and air leak are factors to reduce the component vacuum lifetime. Theoretical analysis shows that material out-gassing is the main factor of pressure rise inside package. Theoretical analysis and calculation show that designed metallic structure can meet the need of 10-years life.

  1. Vacuum System for HL-2A Tokamak

    Institute of Scientific and Technical Information of China (English)

    曹曾; 崔成和; 刘德权; 蔡萧; 高霄燕

    2005-01-01

    The vacuum system for HL-2A was built in 2003. The test results indicated that this system is feasible. It consists of three main parts: a pumping system, a pumping divertor and a glow discharge cleaning (GDC) system. For the pumping system, there are three main functions:(1) evacuating the vacuum vessel thus to produce an ultra high vacuum, (2) removal of impurities released during baking and (3) pumping during GDC. The pumping divertor controls the particles at the plasma edge and the GDC system provides a clean wall conditioning. During the first campaign of physical trial experiment on HL-2A, the ultimate pressure reached 4.6×10-6 Pa, and of ASDEX.

  2. A Foundation for Vacuuming Temporal Databases

    DEFF Research Database (Denmark)

    Skyt, Janne; Jensen, Christian Søndergaard; Mark, L.

    2003-01-01

    A wide range of real-world database applications, including financial and medical applications, are faced with accountability and traceability requirements. These requirements lead to the replacement of the usual update-in-place policy by an append-only policy that retain all previous states...... in the database. This policy result in so-called transaction-time databases which are ever-growing. A variety of physical storage structures and indexing techniques as well as query languages have been proposed for transaction-time databases, but the support for physical removal of data, termed vacuuming, has...... only received little attention. Such vacuuming is called for by, e.g., the laws of many countries and the policies of many businesses. Although necessary, with vacuuming, the database’s perfect recollection of the past may be compromised via, e.g., selective removal of records pertaining to past states...

  3. Vacuum birefringence in strong inhomogeneous electromagnetic fields

    CERN Document Server

    Karbstein, Felix; Reuter, Maria; Zepf, Matt

    2015-01-01

    Birefringence is one of the fascinating properties of the vacuum of quantum electrodynamics (QED) in strong electromagnetic fields. The scattering of linearly polarized incident probe photons into a perpendicularly polarized mode provides a distinct signature of the optical activity of the quantum vacuum and thus offers an excellent opportunity for a precision test of non-linear QED. Precision tests require accurate predictions and thus a theoretical framework that is capable of taking the detailed experimental geometry into account. We derive analytical solutions for vacuum birefringence which include the spatio-temporal field structure of a strong optical pump laser field and an x-ray probe. We show that the angular distribution of the scattered photons depends strongly on the interaction geometry and find that scattering of the perpendicularly polarized scattered photons out of the cone of the incident probe x-ray beam is the key to making the phenomenon experimentally accessible with the current generatio...

  4. Metastable electroweak vacuum. Implications for inflation

    Energy Technology Data Exchange (ETDEWEB)

    Lebedev, Oleg; Westphal, Alexander [DESY Theory Group, Hamburg (Germany)

    2012-10-15

    Within the Standard Model, the current Higgs and top quark data favor metastability of the electroweak vacuum, although the uncertainties are still significant. The true vacuum is many orders of magnitude deeper than ours and the barrier separating the two is tiny compared to the depth of the well. This raises a cosmological question: how did the Higgs field get trapped in the shallow minimum and why did it stay there during inflation? The Higgs initial conditions before inflation must be fine-tuned to about one part in 10{sup 8} in order for the Higgs field to end up in the right vacuum. In this note, we show that these problems can be resolved if there is a small positive coupling between the Higgs and the inflaton.

  5. Quantum vacuum radiation in optical glass

    CERN Document Server

    Liberati, Stefano; Visser, Matt

    2011-01-01

    A recent experimental claim of the detection of analogue Hawking radiation in an optical system [PRL 105 (2010) 203901] has led to some controversy [PRL 107 (2011) 149401, 149402]. While this experiment strongly suggests some form of particle creation from the quantum vacuum (and hence it is per se very interesting), it is also true that it seems difficult to completely explain all features of the observations by adopting the perspective of a Hawking-like mechanism for the radiation. For instance, the observed photons are emitted parallel to the optical horizon, and the relevant optical horizon is itself defined in an unusual manner by combining group and phase velocities. This raises the question: Is this really Hawking radiation, or some other form of quantum vacuum radiation? Naive estimates of the amount of quantum vacuum radiation generated due to the rapidly changing refractive index --- sometimes called the dynamical Casimir effect --- are not encouraging. However we feel that naive estimates could be ...

  6. Vacuum interrupters and thyratrons as opening switches

    Science.gov (United States)

    Honig, E. M.

    High power opening switches for inductive storage for large scale energy storage applications are described. The triggered vacuum interrupter and the magnetically quenched thyratrons are discussed. By electrically retriggering the discharge in the vacuum interrupter between pulses, the dependence on mechanical motion is eliminated. This should enable repetition rate operation at 10 to 15 kHz while still maintaining the vacuum interrupter's proven interrupting performance of tens of kiloamps at tens of kilovolts. The magnetically quenched thyratron uses a cross magnetic field to raise the switch impedance by decreasing the electron mobility and driving the discharge into an arc chute wall where it is quenched. Attempts to understand the basic mechanisms involved and to increase the switch, ratings, and particularly the conduction time, are discussed.

  7. Mathematical Model for the Continuous Vacuum Drying

    Institute of Scientific and Technical Information of China (English)

    DAI Hui-liang

    2002-01-01

    An improved mathematical model for the continuous vacuum drying of highly viscous and heatsensitive foodstuffs was proposed, The process of continuous vacuum drying was presented as a moving boundary problem of moisture evaporation in cylindrical coordinates. Boundary condition of the first kind for the known functional dependence of the drying body surface temperature on time was considered. Finally, the appropriate system of differential equations was solved numerically and the values of drying rate, integral moisture content of the material, moving boundary position as well as temperature in any point of the material and at any moment time were obtained. This procedure was applied to continuous vacuum drying of foods such as natural cheese and fresh meat paste.

  8. Friedmann cosmology with decaying vacuum density

    CERN Document Server

    Borges, H A

    2005-01-01

    Among the several proposals to solve the incompatibility between the observed small value of the cosmological constant and the huge value obtained by quantum field theories, we can find the idea of a decaying vacuum energy density, leading from high values at early times of universe evolution to the small value observed nowadays. In this paper we consider a variation law for the vacuum density recently proposed by Schutzhold on the basis of quantum field estimations in the curved, expanding background, characterized by a vacuum density proportional to the Hubble parameter. We show that, in the context of an isotropic and homogeneous, spatially flat model, the corresponding solutions retain the well established features of the standard cosmology, and, in addition, are in accordance with the observed cosmological parameters. Our scenario presents an initial phase dominated by radiation, followed by a dust era long enough to permit structure formation, and by an epoch dominated by the cosmological term, which te...

  9. A Foundation for Vacuuming Temporal Databases

    DEFF Research Database (Denmark)

    Skyt, Janne; Jensen, Christian Søndergaard; Mark, L.

    2003-01-01

    A wide range of real-world database applications, including financial and medical applications, are faced with accountability and traceability requirements. These requirements lead to the replacement of the usual update-in-place policy by an append-only policy that retain all previous states...... in the database. This policy result in so-called transaction-time databases which are ever-growing. A variety of physical storage structures and indexing techniques as well as query languages have been proposed for transaction-time databases, but the support for physical removal of data, termed vacuuming, has...... only received little attention. Such vacuuming is called for by, e.g., the laws of many countries and the policies of many businesses. Although necessary, with vacuuming, the database’s perfect recollection of the past may be compromised via, e.g., selective removal of records pertaining to past states...

  10. Materials for high vacuum technology, an overview

    CERN Document Server

    Sgobba, Stefano

    2007-01-01

    In modern accelerators stringent requirements are placed on materials of vacuum systems. Their physical and mechanical properties, machinability, weldability or brazeability are key parameters. Adequate strength, ductility, magnetic properties at room as well as low temperatures are important factors for vacuum systems of accelerators working at cryogenic temperatures, such as the Large Hadron Collider (LHC) under construction at CERN. In addition, baking or activation of Non-Evaporable Getters (NEG) at high temperatures impose specific choices of material grades of suitable tensile and creep properties in a large temperature range. Today, stainless steels are the dominant materials of vacuum constructions. Their metallurgy is extensively treated. The reasons for specific requirements in terms of metallurgical processes are detailed, in view of obtaining adequate purity, inclusion cleanliness, and fineness of the microstructure. In many cases these requirements are crucial to guarantee the final leak tightnes...

  11. Effective Theory of Higgs Sector Vacuum States

    CERN Document Server

    Egana-Ugrinovic, Daniel

    2015-01-01

    The effective field theory description for modifications of Standard Model-like Higgs boson interactions arising from tree-level mixing with heavy Higgs sector vacuum states without conserved quantum numbers is presented. An expansion in terms of effective operator dimension based on powers of the heavy mass scale rather than operator dimension is utilized to systematically organize interactions within the effective theory. Vacuum states arising from electroweak singlet extensions of the Higgs sector yield at leading order only two effective dimension-six operators. One of these uniformly dilutes all the interactions of a single physical Higgs boson as compared with Standard Model expectations, while the combination of the two operators give more general modifications of all remaining interactions with two or more physical Higgs bosons. Vacuum states arising from an additional electroweak doublet yield three types of effective dimension-six operators that modify physical Higgs boson couplings to fermion pairs...

  12. Development of vacuum die-casting process

    Institute of Scientific and Technical Information of China (English)

    Masashi Uchida

    2009-01-01

    The vacuum die-casting process, started 25 years ago in Japan, has been widely applied. This technology contributes very much to improvement of castings quality. The main factor causing the defects of die castings is the trapped air in the mold cavity, while the key technology of vacuum die-casting process is to avoid the trapped air effectively by evacuating the cavity before casting. At the same time, due to the shot speed and the casting pressure reduced in half, the service life of the die is prolonged and the productivity is enhanced, as well. Vacuum die-casting process is of great significance in improving the die castings quality and making up the shortcomings of super-high-speed shot casting.

  13. Thermodynamical aspects of running vacuum models

    Energy Technology Data Exchange (ETDEWEB)

    Lima, J.A.S. [Universidade de Sao Paulo, Departamento de Astronomia, Sao Paulo (Brazil); Basilakos, Spyros [Academy of Athens, Research Center for Astronomy and Applied Mathematics, Athens (Greece); Sola, Joan [Univ. de Barcelona, High Energy Physics Group, Dept. d' Estructura i Constituents de la Materia, Institut de Ciencies del Cosmos (ICC), Barcelona, Catalonia (Spain)

    2016-04-15

    The thermal history of a large class of running vacuum models in which the effective cosmological term is described by a truncated power series of the Hubble rate, whose dominant term is Λ(H) ∝ H{sup n+2}, is discussed in detail. Specifically, by assuming that the ultrarelativistic particles produced by the vacuum decay emerge into space-time in such a way that its energy density ρ{sub r} ∝ T{sup 4}, the temperature evolution law and the increasing entropy function are analytically calculated. For the whole class of vacuum models explored here we find that the primeval value of the comoving radiation entropy density (associated to effectively massless particles) starts from zero and evolves extremely fast until reaching a maximum near the end of the vacuum decay phase, where it saturates. The late-time conservation of the radiation entropy during the adiabatic FRW phase also guarantees that the whole class of running vacuum models predicts the same correct value of the present day entropy, S{sub 0} ∝ 10{sup 87}-10{sup 88} (in natural units), independently of the initial conditions. In addition, by assuming Gibbons¨CHawking temperature as an initial condition, we find that the ratio between the late-time and primordial vacuum energy densities is in agreement with naive estimates from quantum field theory, namely, ρ{sub Λ0}/ρ{sub ΛI} 10{sup -123}. Such results are independent on the power n and suggests that the observed Universe may evolve smoothly between two extreme, unstable, non-singular de Sitter phases. (orig.)

  14. DUSTiNGS. III. Distribution of Intermediate-age and Old Stellar Populations in Disks and Outer Extremities of Dwarf Galaxies

    Science.gov (United States)

    McQuinn, Kristen B.; Boyer, Martha; DUSTiNGS Team

    2017-06-01

    As part of the DUST in Nearby Galaxies with Spitzer (DUSTiNGS) survey, we have traced the spatial distributions of intermediate-age and old stars in nine dwarf galaxies in the distant parts of the Local Group. We find intermediate age stars are well mixed with the older populations and extend to large radii, indicating that chemical enrichment from these dust-producing stars may occur in the outer regions of galaxies with some frequency. Theories of structure formation in dwarf galaxies must account for the lack of radial gradients in intermediate-age populations and the presence of these stars in the outer extremities of dwarfs. We also identify the tip of the red giant branch (TRGB) in Spitzer IRAC 3.6 μm photometry. Unlike the constant TRGB in the I band, at 3.6 μm, the TRGB magnitude varies by ˜0.7 mag and is not a metallicity independent distance indicator.

  15. A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies

    Science.gov (United States)

    Massart, Sebastien; Candresse, Thierry; Gil, José; Lacomme, Christophe; Predajna, Lukas; Ravnikar, Maja; Reynard, Jean-Sébastien; Rumbou, Artemis; Saldarelli, Pasquale; Škorić, Dijana; Vainio, Eeva J.; Valkonen, Jari P. T.; Vanderschuren, Hervé; Varveri, Christina; Wetzel, Thierry

    2017-01-01

    Recent advances in high-throughput sequencing technologies and bioinformatics have generated huge new opportunities for discovering and diagnosing plant viruses and viroids. Plant virology has undoubtedly benefited from these new methodologies, but at the same time, faces now substantial bottlenecks, namely the biological characterization of the newly discovered viruses and the analysis of their impact at the biosecurity, commercial, regulatory, and scientific levels. This paper proposes a scaled and progressive scientific framework for efficient biological characterization and risk assessment when a previously known or a new plant virus is detected by next generation sequencing (NGS) technologies. Four case studies are also presented to illustrate the need for such a framework, and to discuss the scenarios. PMID:28174561

  16. Virtualities of quark and gluon in QCD vacuum

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The non-local vacuum condensates of quantum chromodynamics (QCD) describe the distributions of quarks and gluons in the non-perturbative QCD vacuum state. Physically, this means that vacuum quarks and gluons have a nonzero mean-squared momentum in the vacuum, called virtuality. The quark virtuality is given by the ratio of the local quark-gluon mixed vacuum condensate to the quark local vacuum condensate. The gluon virtuality is expressed by gluon vacuum condensates and four-quark vacuum condensates. We study the two virtualities by solving Dyson-Schwinger Equations and calculating quark and gluon vacuum condensates. Our theoretical results for quark virtuality are in good agreement with many other theoretical model predictions such as QCD sum rules and lattice QCD calculations. Our calculation on gluon virtuality is initial and the results are quite interesting.

  17. The QCD vacuum probed by overlap fermions

    CERN Document Server

    Weinberg, V; Koller, K; Koma, Y; Schierholz, G; Streuer, T

    2006-01-01

    We summarize different uses of the eigenmodes of the Neuberger overlap operator for the analysis of the QCD vacuum, here applied to quenched configurations simulated by means of the Luescher-Weisz action. We describe the localization and chiral properties of the lowest modes. The overlap-based topological charge density (with and without UV-filtering) is compared with the results of UV-filtering for the field strength tensor. The latter allows to identify domains of good (anti-)selfduality. All these techniques together lead to a dual picture of the vacuum, unifying the infrared instanton picture with the presence of singular defects co-existent at different scales.

  18. Tachyon Vacuum in Cubic Superstring Field Theory

    CERN Document Server

    Erler, Theodore

    2008-01-01

    In this paper we give an exact analytic solution for tachyon condensation in the modified (picture 0) cubic superstring field theory. We prove the absence of cohomology and, crucially, reproduce the correct value for the D-brane tension. The solution is surprising for two reasons: First, the existence of a tachyon vacuum in this theory has not been definitively established in the level expansion. Second, the solution {\\it vanishes} in the GSO$(-)$ sector, implying a ``tachyon vacuum'' solution exists even for a {\\it BPS} D-brane.

  19. Catalysis of Schwinger Vacuum Pair Production

    CERN Document Server

    Dunne, Gerald V; Schützhold, Ralf

    2009-01-01

    We propose a new catalysis mechanism for non-perturbative vacuum electron-positron pair production, by superimposing a plane-wave X-ray probe beam with a strongly focused optical laser pulse, such as is planned at the Extreme Light Infrastructure (ELI) facility. We compute the absorption coefficient arising from vacuum polarization effects for photons below threshold in a strong electric field. This set-up should facilitate the (first) observation of this non-perturbative QED effect with planned light sources such as ELI yielding an envisioned intensity of order 10^{26}W/cm^2.

  20. Higgs Vacuum Stability and Modified Chaotic Inflation

    CERN Document Server

    Saha, Abhijit Kumar

    2016-01-01

    The issue of electroweak vacuum stability is studied in presence of a scalar field which participates in modifying the minimal chaotic inflation model. It is shown that the threshold effect on the Higgs quartic coupling originating from the Higgs-inflaton sector interaction can essentially make the electroweak vacuum stable upto the Planck scale. On the other hand we observe that the new physics parameters in this combined framework are enough to provide deviation from the minimal chaotic inflation predictions so as to keep it consistent with recent observation by Planck 2015.

  1. The fate of the Higgs vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Burda, Philipp [Racah Institute of Physics, Hebrew University,Jerusalem 91904 (Israel); Centre for Particle Theory, Durham University,South Road, Durham, DH1 3LE (United Kingdom); Gregory, Ruth [Centre for Particle Theory, Durham University,South Road, Durham, DH1 3LE (United Kingdom); Perimeter Institute,31 Caroline Street North, Waterloo, ON, N2L 2Y5 (Canada); Moss, Ian G. [School of Mathematics and Statistics, Newcastle University,Newcastle Upon Tyne, NE1 7RU (United Kingdom)

    2016-06-06

    We have recently suggested that tiny black holes can act as nucleation seeds for the decay of the metastable Higgs vacuum. Previous results applied only to the nucleation of thin-wall bubbles, and covered a very small region of parameter space. This paper considers bubbles of arbitrary profile and reaches the same conclusion: black holes seed rapid vacuum decay. Seeded and unseeded nucleation rates are compared, and the gravitational back reaction of the bubbles is taken into account. The evolution of the bubble interior is described for the unseeded nucleation. Results are presented for the renormalisation group improved Standard Model Higgs potential, and a simple effective model representing new physics.

  2. MEMS ion-sorption high vacuum pump

    Science.gov (United States)

    Grzebyk, T.; Knapkiewicz, P.; Szyszka, P.; Gorecka-Drzazga, A.; Dziuban, J. A.

    2016-11-01

    In the article a miniature MEMS-type ion-sorption vacuum pump has been presented. The influence of electric and magnetic field, as well as horizontal and vertical dimensions of the micropump and type of material used for electrodes on the pump properties has been investigated. It has been found that the micropump works efficiently as long as the magnetic field is higher than 0.3 T, and pumping cell is larger than 1x1x1 mm3. The pump allows generating vacuum at the level of 10-7-10-9 hPa in 100 mm3 volume.

  3. Vacuum stability in neutrinophilic Higgs doublet model

    Energy Technology Data Exchange (ETDEWEB)

    Haba, Naoyuki [Department of Physics, Osaka University, Toyonaka, Osaka 560-0043 (Japan); Horita, Tomohiro, E-mail: tomohiro@het.phys.sci.osaka-u.ac.jp [Department of Physics, Osaka University, Toyonaka, Osaka 560-0043 (Japan)

    2011-11-03

    A neutrinophilic Higgs model has tiny vacuum expectation value (VEV), which can naturally explain tiny masses of neutrinos. There is a large energy scale hierarchy between a VEV of the neutrinophilic Higgs doublet and that of usual standard model-like Higgs doublet. In this Letter we at first analyze vacuum structures of Higgs potential in both supersymmetry (SUSY) and non-SUSY neutrinophilic Higgs models, and next investigate a stability of this VEV hierarchy against radiative corrections. We will show that the VEV hierarchy is stable against radiative corrections in both Dirac neutrino and Majorana neutrino scenarios in both SUSY and non-SUSY neutrinophilic Higgs doublet models.

  4. Cold Vacuum Drying (CVD) Set Point Determination

    Energy Technology Data Exchange (ETDEWEB)

    PHILIPP, B.L.

    2000-03-21

    The Safety Class Instrumentation and Control (SCIC) system provides active detection and response to process anomalies that, if unmitigated, would result in a safety event. Specifically, actuation of the SCIC system includes two portions. The portion which isolates the MCO and initiates the safety-class helium (SCHe) purge, and the portion which detects and stops excessive heat input to the MCO on high tempered water MCO inlet temperature. For the MCO isolation and purge, the SCIC receives signals from MCO pressure (both positive pressure and vacuum), helium flow rate, bay high temperature switches, seismic trips and time under vacuum trips.

  5. Diagnosis for choroideremia in a large Chinese pedigree by next-generation sequencing (NGS) and non-invasive prenatal testing (NIPT)

    Science.gov (United States)

    Zhu, Li; Cheng, Jingliang; Zhou, Boxu; Wei, Chunli; Yang, Weichan; Jiang, Dong; Ijaz, Iqra; Tan, Xiaojun; Chen, Rui; Fu, Junjiang

    2017-01-01

    To develop an effective strategy to isolate and use cell-free fetal DNA (cffDNA) for the combined use of next-generation sequencing (NGS) for diagnosing choroideremia and non-invasive prenatal testing (NIPT) for Y chromosome determination, a large Chinese family with an X-linked recessive disease, choroideremia, was recruited. Cell-free DNA was extracted from maternal plasma, and SRY polymerase chain reaction amplification was performed using NIPT. Sanger sequencing was subsequently used for fetal amniotic fluid DNA verification. A nonsense mutation (c.C799T:p.R267X) of the CHM gene on the X chromosome of the proband (IV:7) and another 5 males with choroideremia were detected, while 3 female carriers with no symptoms were also identified. The fetus (VI:7) was identified as female from the cffDNA, and the same heterozygous nonsense mutation present in her mother was also confirmed. At one and a half years of age, the female baby did not present with any associated symptoms of choroideremia. Therefore, cffDNA was successfully used for the combined use of NGS for diagnosing choroideremia in a large Chinese pedigree, and NIPT for Y chromosome determination. This approach should result in a markedly increased use of prenatal diagnosis and improvement, and more sophisticated clinical management of diseases in China and other developing countries. The establishment of a highly accurate method for prenatal gene diagnosis will allow for more reliable gene diagnosis, improved genetic counseling, and personalized clinical management of our patients. PMID:28098911

  6. Simulations and Vacuum Tests of a CLIC Accelerating Structure

    CERN Document Server

    Garion, C

    2011-01-01

    The Compact LInear Collider, under study, is based on room temperature high gradient structures. The vacuum specificities of these cavities are low conductance, large surface areas and a non-baked system. The main issue is to reach UHV conditions (typically 10-7 Pa) in a system where the residual vacuum is driven by water outgassing. A finite element model based on an analogy thermal/vacuum has been built to estimate the vacuum profile in an accelerating structure. Vacuum tests are carried out in a dedicated set-up, the vacuum performances of different configurations are presented and compared with the predictions.

  7. Preliminary studies for the LHCb vertex detector vacuum system

    CERN Document Server

    Doets, M; Van Bakel, N; Van den Brand, J F J; van den Brand, Jo

    2000-01-01

    We lay down some general considerations which will serve as a starting point for design studies of a realistic LHCb vertex detector vacuum system. Based on these considerations, we propose a design strategy and identify issues to be further studied. In particular we try to outline some boundary conditions imposed by LHC and LHCb on the vacuum system. We discuss two possibilities for the LHCb vertex detector vacuum system. The preferred strategy uses a differentially pumped vacuum system with the silicon detectors separated from the beam line vacuum. Some estimations on static vacuum pressures and gas flows are presented.

  8. Procurement specification high vacuum test chamber and pumping system

    Energy Technology Data Exchange (ETDEWEB)

    Cormick, J. E.

    1976-05-31

    The specification establishes requirements for a high-vacuum test chamber, associated vacuum pumps, valves, controls, and instrumentation that shall be designed and fabricated for use as a test chamber for testing a closed loop Brayton Isotope Power System (BIPS) Ground Demonstration System (GDS). The vacuum system shall include all instrumentation required for pressure measurement and control of the vacuum pumping system. A general outline of the BIPS-GDS in the vacuum chamber and the preliminary piping and instrumentation interface to the vacuum chamber are shown.

  9. Wormholes in vacuum Brans-Dicke theory

    CERN Document Server

    Bhadra, A; Bhadra, Arunava; Sarkar, Kabita

    2005-01-01

    It is shown that among the different classes of claimed static wormhole solutions of the vacuum Brans-Dicke theory only Brans Class I solution with coupling constant $\\omega$ less than -1.5 (excluding the point $\\omega =2$) gives rise to physically viable traversable wormhole geometry. Usability of this wormhole geometry for interstellar travel has been examined.

  10. The HIE-ISOLDE Vacuum System

    CERN Document Server

    Vandoni, G; Radwan, K; Chiggiato, P

    2014-01-01

    The High Intensity and Energy Isolde (HIE-Isolde) project aims at increasing the energy and intensity of the radioactive ion beams (RIB) delivered by the present Rex-Isolde facility. Energy up to 10MeV/amu will be reached by a new post-accelerating, superconducting (SC) linac. Beam will be delivered via a HEBT to three experimental stations for nuclear physics. To keep the SC linac compact and avoid cold-warm transitions, the cryomodules feature a common beam and insulation vacuum. Radioactive ion beams require a hermetically sealed vacuum, with transfer of the effluents to the nuclear ventilation chimney. Hermetically sealed, dry, gas transfer vacuum pumps are preferred to gas binding pumps, for an optimized management of radioactive contamination risk during maintenance and intervention. The vacuum system of the SC-linac is isolated by two fast valves, triggered by fast reacting cold cathode gauges installed on the warm linac, the HEBT and the experimental stations. Rough pumping is distributed, while the H...

  11. ALICE's first vacuum bakeout a success

    CERN Multimedia

    2007-01-01

    At the beginning of April, the ALICE central beryllium beam pipe and absorber beam pipes were successfully conditioned. The installation and bakeout shell surround the beam pipe (lower left), running through the middle of the ITS and TPC. Notice the high-tech cooling system, an additional precaution to avoid overheating the ALICE detection equipment.One end of the vacuum sector during the bakeout and pure gas refill. It is unusual for a vacuum sector to end as it does in the middle of a non-accessible detector and made the installation and cabling of the bakeout equipment a more difficult procedure. Just before Easter, the first bakeout and NEG activation of experimental chambers in the LHC was carried out, followed by ultra pure gas refill. The bakeout consisted of externally heating the chambers under vacuum in order to lower their outgassing. This same heating process also activates the NEG, a coating on the inside surface of the beam vacuum chambers, which pumps the residual gas. ALICE's bakeout was pa...

  12. Exact Vacuum Solutions to the Einstein Equation

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper, the author presents a framework for getting a series of exact vacuum solutions to the Einstein equation. This procedure of resolution is based on a canonical form of the metric. According to this procedure, the Einstein equation can be reduced to some 2-dimensional Laplace-like equations or rotation and divergence equations,which are much convenient for the resolution.

  13. Prototype Vacuum Chamber for ISR Intersection Region

    CERN Multimedia

    1974-01-01

    The vacuum chambers at the ISR interaction region had to be as transparent as possible to the secondary particles emerging from the collision points. Made from stainless steel or titanium, only a fraction of a millimeter thick, they were most delicate to handle.

  14. Graviton Corrections to Vacuum Polarization during Inflation

    CERN Document Server

    Leonard, Katie E

    2014-01-01

    We use dimensional regularization to compute the one loop quantum gravitational contribution to the vacuum polarization on de Sitter background. Adding the appropriate BPHZ counterterms gives a fully renormalized result which can be used to quantum correct Maxwell's equations. We use the Hartree approximation to argue that the electric field strengths of photons experience a secular suppression during inflation.

  15. SNS Vacuum Instrumentation and Control System

    Energy Technology Data Exchange (ETDEWEB)

    J. Y. Tang; L. A. Smart; H. C. Hseuh; P. S. Marroquin; L. R. Dalesio; S. A. Lewis; C. A. Lionberger; K. Kishiyama; D. P. Gurd; M. Hechler; W. Schneider

    2001-11-01

    The Spallation Neutron Source (SNS) vacuum instrumentation and control systems are being designed at Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), Thomas Jefferson National Accelerator facility (TJNAF) and Los Alamos National Laboratory (LANL). Each participating lab is responsible for a different section of the machine: LBNL for the Front-End section, LANL for the warm LINAC section, TJNAF for the cold LINAC section and BNL for the Ring and transfer line sections. The vacuum instrumentation and control systems are scheduled to be installed and be in operation at Oak Ridge National Laboratory in 2004 or 2005. Although the requirements vary for different sections of the machine, a collaborative effort has been made to standardize vacuum instrumentation components and the global control system interfaces. This paper summarizes the design of each sub-section of vacuum instrumentation and control system and discusses SNS standards for Ion Pump and Gauge controllers, Programmable Logic Controller (PLC) interfaces, Ladder Logic programming and the SNS global control system interfaces.

  16. Design of the EBIS vacuum system

    Energy Technology Data Exchange (ETDEWEB)

    Mapes, M.; Smart, L.; Weiss, D.

    2011-03-28

    At Brookhaven National Laboratory the Electron Beam Ion Source (EBIS) is presently being commissioned. The EBIS will be a new heavy ion pre-injector for the Relativistic Heavy Ion Collider (RHIC). The new preinjector has the potential for significant future intensity increases and can produce heavy ion beams of all species including uranium. The background pressure in the ionization region of the EBIS required to be low enough that it does not produce a significant number of ions from background gas. The pressure in the regions of the electron gun and electron collector can be higher than in the ionization region provided there is efficient vacuum separation between the sections. For injection the ions must be accelerated to 100KV by pulsing the EBIS platform. All associated equipment including the vacuum equipment on the platform is at a 100KV potential. The vacuum system design and the vacuum controls for the EBIS platform and transport system will be presented as well as the interface with the Booster Ring which has a pressure 10-11 Torr.

  17. Vacuum alignment and radiatively induced Fermi scale

    CERN Document Server

    Alanne, Tommi

    2016-01-01

    We extend the discussion about vacuum misalignment by quantum corrections in models with composite pseudo-Goldstone Higgs boson to renormalisable models with elementary scalars. As a concrete example, we propose a framework, where the hierarchy between the unification and the Fermi scale emerges radiatively. This scenario provides an interesting link between the unification and Fermi scale physics.

  18. Vacuum chamber at intersection I-6

    CERN Multimedia

    1971-01-01

    The vacuum chamber at intersection region I-6, one of these where experiments in colliding-beam physics will be taking place. The "wheels" prevent the thin wall (1.5 mm) of the chamber from collapsing. The chamber is equipped with heating tapes and its wrapped in thermal insulation. Residual gas pressure at this and other similar regions is around 10_11.

  19. True random numbers from amplified quantum vacuum.

    Science.gov (United States)

    Jofre, M; Curty, M; Steinlechner, F; Anzolin, G; Torres, J P; Mitchell, M W; Pruneri, V

    2011-10-10

    Random numbers are essential for applications ranging from secure communications to numerical simulation and quantitative finance. Algorithms can rapidly produce pseudo-random outcomes, series of numbers that mimic most properties of true random numbers while quantum random number generators (QRNGs) exploit intrinsic quantum randomness to produce true random numbers. Single-photon QRNGs are conceptually simple but produce few random bits per detection. In contrast, vacuum fluctuations are a vast resource for QRNGs: they are broad-band and thus can encode many random bits per second. Direct recording of vacuum fluctuations is possible, but requires shot-noise-limited detectors, at the cost of bandwidth. We demonstrate efficient conversion of vacuum fluctuations to true random bits using optical amplification of vacuum and interferometry. Using commercially-available optical components we demonstrate a QRNG at a bit rate of 1.11 Gbps. The proposed scheme has the potential to be extended to 10 Gbps and even up to 100 Gbps by taking advantage of high speed modulation sources and detectors for optical fiber telecommunication devices.

  20. Nonstatic vacuum strings: Exterior and interior solutions

    Energy Technology Data Exchange (ETDEWEB)

    Stein-Schabes, J.A.

    1986-06-15

    New nonstatic cylindrically symmetric solutions of Einstein's equations are presented. Some of these solutions represent stringlike objects. An exterior vacuum solution is matched to a nonvacuum interior solution for different forms of the energy-momentum tensor. They generalize the standard static string.

  1. Miniature piezo electric vacuum inlet valve

    Science.gov (United States)

    Keville, Robert F.; Dietrich, Daniel D.

    1998-03-24

    A miniature piezo electric vacuum inlet valve having a fast pulse rate and is battery operated with variable flow capability. The low power (piezo electric valves which require preloading of the crystal drive mechanism and 120 Vac, thus the valve of the present invention is smaller by a factor of three.

  2. Quantum teleportation of entangled squeezed vacuum states

    Institute of Scientific and Technical Information of China (English)

    蔡新华

    2003-01-01

    An optical scheme for probabilistic teleporting entangled squeezed vacuum states (SVS) is proposed. In this scheme,the teleported state is a bipartite entangled SVS,and the quantum channel is a tripartite entangled SVS.The process of the teleportation is achieved by using a 50/50 symmetric beamsplitter and photon detectors with the help of classical information.

  3. Vacuum Acceptance Tests for the UHV Room Temperature Vacuum System of the LHC during LS1

    CERN Document Server

    Cattenoz, G; Bregliozzi, G; Calegari, D; Gallagher, J; Marraffa, A; Chiggiato, P

    2014-01-01

    During the CERN Large Hadron Collider (LHC) first long shut down (LS1), a large number of vacuum tests are carried out on consolidated or newly fabricated devices. In such a way, the vacuum compatibility is assessed before installation in the UHV system of the LHC. According to the equipment’s nature, the vacuum acceptance tests consist in functional checks, leak test, outgassing rate measurements, evaluation of contaminants by Residual Gas Analysis (RGA), pumping speed measurements and qualification of the H2 sticking probability of Non-Evaporable-Getter (NEG) coating. In this paper, the methods used for the tests and the acceptance criteria are described. A summary of the measured vacuum characteristics for the tested components is also given.

  4. Spent nuclear fuel project cold vacuum drying facility vacuum and purge system design description

    Energy Technology Data Exchange (ETDEWEB)

    IRWIN, J.J.

    1998-11-30

    This document provides the System Design Description (SDD) for the Cold Vacuum Drying Facility (CVDF) Vacuum and Purge System (VPS) . The SDD was developed in conjunction with HNF-SD-SNF-SAR-O02, Safety Analysis Report for the Cold Vacuum Drying Facility, Phase 2, Supporting Installation of Processing Systems (Garvin 1998), The HNF-SD-SNF-DRD-002, 1998, Cold Vacuum Drying Facility Design Requirements, and the CVDF Design Summary Report. The SDD contains general descriptions of the VPS equipment, the system functions, requirements and interfaces. The SDD provides references for design and fabrication details, operation sequences and maintenance. This SDD has been developed for the SNFP Operations Organization and shall be updated, expanded, and revised in accordance with future design, construction and startup phases of the CVDF until the CVDF final ORR is approved.

  5. Heretics of the False Vacuum Gravitational Effects On and Of Vacuum Decay 2

    CERN Document Server

    Banks, T

    2002-01-01

    This paper reexamines the question of vacuum decay in theories of quantum gravity. In particular it suggests that decay into stable flat or AdS vacua, never occurs. Instead, vacuum decay occurs, if at all, into a cosmological spacetime. If the latter has negative cosmological constant, it undergoes a Big Crunch, which suggests that the whole picture is inconsistent. The question of decay of de Sitter space must be very carefully defined.

  6. Study on local vacuum electron beam welding of flange rim

    CERN Document Server

    He Cheng Dan; Ying Lei; Xu Qi Jin

    2002-01-01

    Local vacuum electron beam welding and its application prospect in military and civil industry are introduced. A home made local vacuum electron beam welding is completed. Its main technical parameters and key techniques are also presented

  7. Electromagnetic vacuum of complex media II: the Lamb, the bulk and the total vacuum energy

    CERN Document Server

    Donaire, M

    2011-01-01

    We study the physical content of the electromagnetic vacuum energy of a random medium made of atomic electric dipoles. We show that the Lamb energy is only a part of it and, consequently, that the Lamb-shift derives from a partial variation of the total vacuum energy. While at leading order in the molecular density the total vacuum energy is that of the optical bulk modes and equals the free-space Lamb energy, the Lamb, the bulk and the total vacuum energies differ at second order. In contrast to the bulk energy, local field factors (LFFs) are present both in the total vacuum energy and in the Lamb energy. They yield natural cutoffs for both spectra at a wavelength of the order of the typical correlation length. Functionally, the difference between the total vacuum and the Lamb energies is due to the presence of higher order LFFs in the former. Physically, the difference is attributed to a shift in the binding energies which structure the spatial configuration of the dipoles. For a Maxwell-Garnett dielectric,...

  8. Improved anchoring of SSS with vacuum barrier to avoid displacement

    CERN Document Server

    Capatina, O; Foreste, A; Parma, V; Renaglia, T; Quesnel, J

    2009-01-01

    As presented in the previous speech, the incident in sector 3-4 of the LHC caused a high pressure build-up inside the cryostat insulation vacuum resulting in high longitudinal forces acting on the insulation vacuum barriers. This resulted in braking floor and floor fixations of the SSS with vacuum barrier. The strategy of improving anchoring of SSS with vacuum barrier to avoid displacement is presented and discussed.

  9. Influence of Photon Mass on Vacuum Birefringence Experiment

    Institute of Scientific and Technical Information of China (English)

    CHEN Min; SHAO Cheng-Gang

    2007-01-01

    Influence of photon mass on vacuum birefringence experiment is analysed according to the nonlinearities of vacuum quantum electrodynamics for the light propagation through an intense electromagnetic field.It is shown that although the photon mass will cause a change of the refractive indices n⊥ and n(‖) of vacuum birefringence,the difference n(‖)-n⊥is unchanged,which means that the effect of photon mass cannot be observed in vacuum birefringence experiment.

  10. 46 CFR 153.368 - Pressure-vacuum valves.

    Science.gov (United States)

    2010-10-01

    ... 46 Shipping 5 2010-10-01 2010-10-01 false Pressure-vacuum valves. 153.368 Section 153.368 Shipping... Systems § 153.368 Pressure-vacuum valves. (a) The pressure side of a required pressure-vacuum relief valve... relief valve must meet the requirements of Subpart 162.017 of this chapter....

  11. 7 CFR 58.913 - Evaporators and vacuum pans.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. ...

  12. Test of an undulated vacuum chamber for the ISR

    CERN Multimedia

    1975-01-01

    This picture shows mechanical tests of an undulated vacuum chamber for downstream arms of ISR intersections. This chamber, made of 0.3 mm thick inconel, had inner dimensions of 150 mm by 50 mm. The deflection under vacuum is measured by dial gauges. On the left one sees the large vessel where vacuum chambers were tested at pressures above atmospheric pressure.

  13. 21 CFR 884.5070 - Vacuum abortion system.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Vacuum abortion system. 884.5070 Section 884.5070 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED... § 884.5070 Vacuum abortion system. (a) Identification. A vacuum abortion system is a device designed...

  14. Structure and decay in the QED vacuum

    Science.gov (United States)

    Labun, Lance Andrew

    This thesis is a guide to a selection of the author's published work that connect and contribute to understanding the vacuum of quantum electrodynamics in strong, prescribed electromagnetic fields. This theme is elaborated over the course of two chapters: The first chapter sets the context, defining the relevant objects and conditions of the study and reviewing established knowledge upon which this study builds. The second chapter organizes and explains important results appearing in the published work. The papers 1. (Labun and Rafelski, 2009) "Vacuum Decay Time in Strong External Fields" 2. (Labun and Rafelski, 2010a) "Dark Energy Simulacrum in Nonlinear Electrodynamics" 3. (Labun and Rafelski, 2010b) "QED Energy-Momentum Trace as a Force in Astrophysics" 4. (Labun and Rafelski, 2010c) "Strong Field Physics: Probing Critical Acceleration and Inertia with Laser Pulses and Quark-Gluon Plasma" 5. (Labun and Rafelski, 2010d) "Vacuum Structure and Dark Energy" 6. (Labun and Rafelski, 2011) "Spectra of Particles from Laser-Induced Vacuum Decay" are presented in their published format as appendices. Related literature is cited throughout the body where it directly supports the content of this overview; more extensive references are found within the attached papers. This study begins with the first non-perturbative result in quantum electrodynamics, a result obtained by Heisenberg and Euler (1936) for the energy of a zero-particle state in a prescribed, long-wavelength electromagnetic field. The resulting Euler-Heisenberg effective potential generates a nonlinear theory of electromagnetism and exhibits the ability of the electrical fields to decay into electron-positron pairs. Context for phenomena arising from the Euler-Heisenberg effective potential is established by considering the energy-momentum tensor of a general nonlinear electromagnetic theory. The mass of a field configuration is defined, and I discuss two of its consequences pertinent to efforts to observe

  15. Representing the vacuum polarization on de Sitter

    Energy Technology Data Exchange (ETDEWEB)

    Leonard, Katie E.; Woodard, Richard P. [Department of Physics, University of Florida, Gainesville, Florida 32611 (United States); Prokopec, Tomislav [Institute of Theoretical Physics (ITP) and Spinoza Institute, Utrecht University, Postbus 80195, 3508 TD Utrecht (Netherlands)

    2013-03-15

    Previous studies of the vacuum polarization on de Sitter have demonstrated that there is a simple, noncovariant representation of it in which the physics is transparent. There is also a cumbersome, covariant representation in which the physics is obscure. Despite being unwieldy, the latter form has a powerful appeal for those who are concerned about de Sitter invariance. We show that nothing is lost by employing the simple, noncovariant representation because there is a closed form procedure for converting its structure functions to those of the covariant representation. We also present a vastly improved technique for reading off the noncovariant structure functions from the primitive diagrams. And we discuss the issue of representing the vacuum polarization for a general metric background.

  16. LHC Vacuum Upgrade during LS1

    CERN Document Server

    Jimenez, J M; Chiggiato, P; Cruikshank, P; Gallilee, M; Garion, C; Gomes, P

    2012-01-01

    The last two years of LHC operation have highlighted concerns on the levels of the dynamic vacuum in the long straight sections in presence of high intensity beams. The analysis of the existing data has shown relationship between pressures spikes and beam screen temperature oscillations or micro-sparking in the RF fingers of the bellows on one side and coincidence of pressure bumps with stimulated desorption by electron cloud, beam losses and/or thermal out gassing stimulated by higher order modes (HOM) losses. The electron cloud mitigation solutions will be adapted to the different configurations: cold/warm transitions, non-coated surfaces in direct view of beams, photoelectrons, etc. All scenarios will be presented together with their efficiencies. Additional pumping and reengineering of components will reduce the sensitivity of the vacuum system to beam losses or HOM inducing out gassing. The expected margin at nominal intensity and energy resulting from these consolidations will be summarized. Finally, th...

  17. Interacting vacuum energy in the dark sector

    Energy Technology Data Exchange (ETDEWEB)

    Chimento, L. P. [Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and IFIBA, CONICET, Cuidad Universitaria, Buenos Aires 1428 (Argentina); Carneiro, S. [Instituto de Física, Uníversídade Federal da Bahia, 40210-340, Salvador, BA (Brazil)

    2015-03-26

    We analyse three cosmological scenarios with interaction in the dark sector, which are particular cases of a general expression for the energy flux from vacuum to matter. In the first case the interaction leads to a transition from an unstable de Sitter phase to a radiation dominated universe, avoiding in this way the initial singularity. In the second case the interaction gives rise to a slow-roll power-law inflation. Finally, the third scenario is a concordance model for the late-time universe, with the vacuum term decaying into cold dark matter. We identify the physics behind these forms of interaction and show that they can be described as particular types of the modified Chaplygin gas.

  18. Classical enhancement of quantum vacuum fluctuations

    CERN Document Server

    De Lorenci, V A

    2016-01-01

    We propose a mechanism for the enhancement of vacuum fluctuations by means of a classical field. The basic idea is that if an observable quantity depends quadratically upon a quantum field, such as the electric field, then the application of a classical field produces a cross term between the classical and quantum fields. This cross term may be significantly larger than the purely quantum part, but also undergoes fluctuations driven by the quantum field. We illustrate this effect in a model for lightcone fluctuations involving pulses in a nonlinear dielectric. Vacuum electric field fluctuations produce fluctuations in the speed of a probe pulse, and form an analog model for quantum gravity effects. If the material has a nonzero third-order susceptibility, then the fractional light speed fluctuations are proportional to the square of the fluctuating electric field. Hence the application of a classical electric field can enhance the speed fluctuations. We give an example where this enhancement can be an increas...

  19. Vacuum Interpretation for Supergravity M-Branes

    CERN Document Server

    Chen, C M; Sharakin, S A; Chen, Chiang-Mei; Gal'tsov, Dmitri V.; Sharakin, Sergei A.

    2000-01-01

    A non-local classical duality between the three-block truncated 11D supergravity and the 8D vacuum gravity with two commuting Killing symmetries is established. The supergravity four-form field is generated via an inverse dualisation of the corresponding Killing two-forms in six dimensions. 11D supersymmetry condition is shown to be equivalent to existence of covariantly constant spinors in eight dimensions. Thus any solution to the vacuum Einstein equations in eight dimensions depending on six coordinates and admitting Killing spinors have supersymmetric 11D-supergravity counterparts. Using this duality we derive some new brane solutions to 11D-supergravity including 1/4 supersymmetric intersecting M-branes with a NUT parameter and a dyon solution joining the M2 and M5-branes intersecting at a point.

  20. Synchronization in arrays of vacuum microdiodes

    CERN Document Server

    Ilkov, Marjan; Manolescu, Andrei; Valfells, Ágúst

    2014-01-01

    Simulations have shown that space-charge effects can lead to regular modulation of photoemitted beams in vacuum diodes with gap sizes on the order of 1 micron and accelerating voltage on the order of 1V. These modulations are in the THz regime and can be tuned by simply changing the emitter area or accelerating vacuum field. The average current in the diode corresponds to the Child-Langmuir current, but the amplitude of the oscillations is affected by various factors. Given the small size and voltage of the system, the maximum radiated AC power is expected to be small. In this work we show that an array of small emitters produces higher frequency signals than a single large emitter of same area, and how these emitters may be synchronized to produce higher power signals.

  1. Posing the first LEAR vacuum chamber

    CERN Multimedia

    1982-01-01

    The photo shows one of the four bending magnets of LEAR. They were of C-type with the opening ('mouth') to the outside of the ring (yoke to the inside). Last preparations are made before the vacuum chamber is slid through the mouth into the magnet. Stochastic cooling pickups/kickers were installed inside the chamber. One can distinguish a large number of feed-throughs on the chamber (leading to the pickup/kicker gaps). The free space in the middle of the block was left to offer room for an internal target in the magnet. This possibility was never exploited. Instead it is used here, to accommodate a pumping port for the high vacuum system. Michel Chanel (left) and Pierre Lefevre admire the mechanics at work.

  2. Electron Backscatter Diffraction in Low Vacuum Conditions

    Energy Technology Data Exchange (ETDEWEB)

    El-Dasher, B S; Torres, S G

    2008-07-17

    Most current scanning electron microscopes (SEMs) have the ability to analyze samples in a low vacuum mode, whereby a partial pressure of water vapor is introduced into the SEM chamber, allowing the characterization of nonconductive samples without any special preparation. Although the presence of water vapor in the chamber degrades electron backscatter diffraction (EBSD) patterns, the potential of this setup for EBSD characterization of nonconductive samples is immense. In this chapter we discuss the requirements, advantages and limitations of low vacuum EBSD (LV-EBSD), and present how this technique can be applied to a two-phase ceramic composite as well as hydrated biominerals as specific examples of when LV-EBSD can be invaluable.

  3. Towards measuring the Archimedes force of vacuum

    CERN Document Server

    Calloni, Enrico; De Rosa, Rosario; Di Fiore, Luciano; Esposito, Giampiero; Garufi, Fabio; Rosa, Luigi; Rovelli, Carlo; Ruggi, Paolo; Tafuri, Francesco

    2014-01-01

    We discuss the force exerted by the gravitational field on a Casimir cavity in terms of Archimedes' force of vacuum, we identify the force that can be tested against observation and we show that the present technology makes it possible to perform the first experimental tests. We motivate the use of suitable high-Tc superconductors as modulators of Archimedes' force. We analyze the possibility of using gravitational wave interferometers as detectors of the force, transported through an optical spring from the Archimedes vacuum force apparatus to the gravitational interferometers test masses to maintain the two systems well separated. We also analyze the use of balances to actuate and detect the force, we compare different solutions and discuss the most important experimental issues.

  4. Vacuum polarization and chiral lattice fermions

    Science.gov (United States)

    Randjbar-Daemi, S.; Strathdee, J.

    1996-02-01

    The vacuum polarization due to chiral fermions on a 4-dimensional Euclidean lattice is calculated according to the overlap prescription. The fermions are coupled to weak and slowly varying background gauge and Higgs fields, and the polarization tensor is given by second order perturbation theory. In this order the overlap constitutes a gauge-invariant regularization of the fermion vacuum amplitude. Its low-energy-long-wavelength behaviour can be computed explicitly and we verify that it coincides with the Feynman graph result obtainable, for example, by dimensional regularization of continuum gauge theory. In particular, the Standard Model Callan-Symanzik RG functions are recovered. Moreover, there are no residual lattice artefacts such as a dependence on Wilson-type mass parameters.

  5. Vacuum polarization and chiral lattice fermions

    CERN Document Server

    Strathdee, J A

    1995-01-01

    The vacuum polarization due to chiral fermions on a 4--dimensional Euclidean lattice is calculated according to the overlap prescription. The fermions are coupled to weak and slowly varying background gauge and Higgs fields, and the polarization tensor is given by second order perturbation theory. In this order the overlap constitutes a gauge invariant regularization of the fermion vacuum amplitude. Its low energy -- long wavelength behaviour can be computed explicitly and we verify that it coincides with the Feynman graph result obtainable, for example, by dimensional regularization of continuum gauge theory. In particular, the Standard Model Callan--Symanzik RG functions are recovered. Moreover, there are no residual lattice artefacts such as a dependence on Wilson--type mass parameters.

  6. Are there Boltzmann brains in the vacuum

    CERN Document Server

    Davenport, Matthew

    2010-01-01

    "Boltzmann brains" are human brains that arise as thermal or quantum fluctuations and last at least long enough to think a few thoughts. In many scenarios involving universes of infinite size or duration, Boltzmann brains are infinitely more common than human beings who arise in the ordinary way. Thus we should expect to be Boltzmann brains, in contradiction to observation. We discuss here the question of whether Boltzmann brains can arise as quantum fluctuations in the vacuum. Such Boltzmann brains pose an even worse problem than those arising as fluctuations in the thermal state of an exponentially expanding universe. We give several arguments for and against inclusion of vacuum Boltzmann brains in the anthropic reference class, but find neither choice entirely satisfactory.

  7. Thermal vacuum chamber repressurization with instrument purging

    Science.gov (United States)

    Woronowicz, Michael S.

    2016-09-01

    At the conclusion of cryogenic vacuum testing of the James Webb Space Telescope Optical Telescope Element Integrated Science Instrument Module (JWST-OTIS) in NASA Johnson Space Center's (JSCs) thermal vacuum (TV) Chamber A, contamination control (CC) engineers are postulating that chamber particulate material stirred up by the repressurization process may be kept from falling into the Integrated Science Instrument Module (ISIM) interior to some degree by activating instrument purge flows over some initial period before opening the chamber valves. This manuscript describes development of a series of models designed to describe this process. The models are strung together in tandem with a fictitious set of conditions to estimate overpressure evolution from which net outflow velocity behavior may be obtained. Creeping flow assumptions are then used to determine the maximum particle size that may be kept suspended above the ISIM aperture, keeping smaller particles from settling within the instrument module.

  8. Thermal Vacuum Chamber Repressurization with Instrument Purging

    Science.gov (United States)

    Woronowicz, Michael

    2017-01-01

    At the end of James Webb Space Telescope (JWST) OTIS (Optical Telescope Element-OTE-Integrated Science Instrument Module-ISIM) cryogenic vacuum testing in NASA Johnson Space Centers (JSCs) thermal vacuum (TV) Chamber A, contamination control (CC) engineers are mooting the idea that chamber particulate material stirred up by the repressurization process may be kept from falling into the ISIM interior to some degree by activating instrument purge flows over some initial period before opening the chamber valves. This memo describes development of a series of models designed to describe this process. These are strung together in tandem to estimate overpressure evolution from which net outflow velocity behavior may be obtained. Creeping flow assumptions are then used to determine the maximum particle size that may be kept suspended above the ISIM aperture, keeping smaller particles from settling within the instrument module.

  9. Vector Potential Quantization and the Quantum Vacuum

    Directory of Open Access Journals (Sweden)

    Constantin Meis

    2014-01-01

    Full Text Available We investigate the quantization of the vector potential amplitude of the electromagnetic field to a single photon state starting from the fundamental link equations between the classical electromagnetic theory and the quantum mechanical expressions. The resulting wave-particle formalism ensures a coherent transition between the classical electromagnetic wave theory and the quantum representation. A quantization constant of the photon vector potential is defined. A new quantum vacuum description results directly in having very low energy density. The calculated spontaneous emission rate and Lambs shift for the nS states of the hydrogen atom are in agreement with quantum electrodynamics. This low energy quantum vacuum state might be compatible with recent astrophysical observations.

  10. Renormalized vacuum polarization of rotating black holes

    CERN Document Server

    Ferreira, Hugo R C

    2015-01-01

    Quantum field theory on rotating black hole spacetimes is plagued with technical difficulties. Here, we describe a general method to renormalize and compute the vacuum polarization of a quantum field in the Hartle-Hawking state on rotating black holes. We exemplify the technique with a massive scalar field on the warped AdS3 black hole solution to topologically massive gravity, a deformation of (2+1)-dimensional Einstein gravity. We use a "quasi-Euclidean" technique, which generalizes the Euclidean techniques used for static spacetimes, and we subtract the divergences by matching to a sum over mode solutions on Minkowski spacetime. This allows us, for the first time, to have a general method to compute the renormalized vacuum polarization (and, more importantly, the renormalized stress-energy tensor), for a given quantum state, on a rotating black hole, such as the physically relevant case of the Kerr black hole in four dimensions.

  11. Chiral vacuum fluctuations in quantum gravity

    CERN Document Server

    Magueijo, Joao

    2010-01-01

    We examine tensor perturbations around a deSitter background within the framework of Ashtekar's variables and cousins parameterized by the Immirzi parameter $\\gamma$. At the classical level we recover standard cosmological perturbation theory, with illuminating insights. Quantization leads to real novelties. In the low energy limit we find a second quantized theory of gravitons which displays different vacuum fluctuations for right and left gravitons. Nonetheless right and left gravitons have the same (positive) energies, resolving a number of paradoxes suggested in the literature. The right-left asymmetry of the vacuum fluctuations depends on $\\gamma$ and the ordering of the Hamiltonian constraint, and it would leave a distinctive imprint in the polarization of the cosmic microwave background, thus opening quantum gravity to observational test.

  12. A model for the quantum vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Joffily, S. [ICRA/CBPF, Rua Dr. Xavier Sigaud, 150 Rio de Janeiro, RJ (Brazil)]. E-mail joffily@cbpf.br

    2007-06-15

    Following our recent works [S. Joffily, Jost function, prime numbers and Riemann zeta function, Contribution to Roberto Salmeron Festschrift, eds. by R. Aldrovandi, et al., AIAFEX, Rio de Janeiro, 2003, math-ph/0303014, S. Joffily, 'The Riemann Zeta Function and Vacuum Spectrum', Proceedings of Science, PoS (WC2004) 026, hep-th/0412217] where it was suggested a 'potential scattering' Hilbert-Polya conjecture, such that the nontrivial zeros of Riemann's zeta function could be put in one-to-one correspondence with the zeros of the s-wave Jost function for finite range potentials in the complex momenta plane, we extend our investigation to a relativistic S matrix for a Dirac particle scattering. We then present a description of the vacuum structure as being a dynamical system described by 'virtual resonances', completely independent of the second quantization.

  13. MMS Observatory Thermal Vacuum Results Contamination Summary

    Science.gov (United States)

    Rosecrans, Glenn P.; Errigo, Therese; Brieda, Lubos

    2014-01-01

    The MMS mission is a constellation of 4 observatories designed to investigate the fundamental plasma physics of reconnection in the Earths magnetosphere. Each spacecraft has undergone extensive environmental testing to prepare it for its minimum 2 year mission. The various instrument suites measure electric and magnetic fields, energetic particles, and plasma composition. Thermal vacuum testing was conducted at the Naval Research Laboratory (NRL) in their Big Blue vacuum chamber. The individual spacecraft were tested and enclosed in a cryopanel enclosure called a Hamster cage. Specific contamination control validations were actively monitored by several QCMs, a facility RGA, and at times, with 16 Ion Gauges. Each spacecraft underwent a bakeout phase, followed by 4 thermal cycles. Unique aspects of the TV environment included slow pump downs with represses, thruster firings, Helium identification, and monitoring pressure spikes with Ion gauges. Various data from these TV tests will be shown along with lessons learned.

  14. Vacuum polarization in Coulomb field revisited

    Energy Technology Data Exchange (ETDEWEB)

    Zamastil, J., E-mail: zamastil@karlov.mff.cuni.cz; Šimsa, D.

    2017-04-15

    Simplified derivation of Wichmann–Kroll term is presented. The derivation uses two formulas for hypergeometric functions, but otherwise is elementary. It is found that Laplace transform of the vacuum charge density diverges at zero momentum transfer. This divergence has nothing to do with known ultraviolet divergence. The latter is related to the large momentum behavior of the pertinent integral, while the former to the small momentum behavior. When these divergences are removed, the energy shift caused by vacuum polarization for an ordinary hydrogen obtained here is in an exact agreement with the result obtained by Wichmann and Kroll. Also, for muonic hydrogen the result obtained here reasonably agrees with that given in literature.

  15. Vacuum polarization and photon mass in inflation

    CERN Document Server

    Prokopec, T; Prokopec, Tomislav; Woodard, Richard P.

    2004-01-01

    We give a pedagogical review of a mechanism through which long wave length photons can become massive during inflation. Our account begins with a discussion of the period of exponentially rapid expansion known as inflation. We next describe how, when the universe is not expanding, quantum fluctuations in charged particle fields cause even empty space to behave as a polarizable medium. This is the routinely observed phenomenon of vacuum polarization. We show that the quantum fluctuations of low mass, scalar fields are enormously amplified during inflation. If one of these fields is charged, the vacuum polarization effect of flat space is strengthened to the point that long wave length photons acquire mass. Our result for this mass is shown to agree with a simple model in which the massive photon electrodynamics of Proca emerges from applying the Hartree approximation to scalar quantum electrodynamics during inflation. One does not measure a huge photon mass today because the original phase of inflation ended w...

  16. Geometrodynamics, Inertia and the Quantum Vacuum

    CERN Document Server

    Haisch, B; Haisch, Bernard; Rueda, Alfonso

    2001-01-01

    Why does {\\bf F} equal m{\\bf a} in Newton's equation of motion? How does a gravitational field produce a force? Why are inertial mass and gravitational mass the same? It appears that all three of these seemingly axiomatic foundational questions have an answer involving an identical physical process: interaction between the electromagnetic quantum vacuum and the fundamental charged particles (quarks and electrons) constituting matter. All three of these effects and equalities can be traced back to the appearance of a specific asymmetry in the otherwise uniform and isotropic electromagnetic quantum vacuum. This asymmetry gives rise to a non-zero Poynting vector from the perspective of an accelerating object. We call the resulting energy-momentum flux the {\\it Rindler flux}. The key insight is that the asymmetry in an accelerating reference frame in flat spacetime is identical to that in a stationary reference frame (one that is not falling) in curved spacetime. Therefore the same Rindler flux that creates inert...

  17. Gowdy-Symmetric Vacuum and Electrovacuum Solutions

    CERN Document Server

    Hennig, Jörg

    2015-01-01

    "Smooth Gowdy-symmetric generalized Taub-NUT solutions" are a class of inhomogeneous cosmological vacuum models with a past and a future Cauchy horizon. In this proceedings contribution, we present families of exact solutions within that class, which contain the Taub solution as a special case, and discuss their properties. In particular, we show that, for a special choice of the parameters, the solutions have a curvature singularity with directional behaviour. For other parameter choices, the maximal globally hyperbolic region is singularity-free. We also construct extensions through the Cauchy horizons and analyse the causal structure of the solutions. Finally, we discuss the generalization from vacuum to electrovacuum and present an exact family of solutions for that case.

  18. Innovative Vacuum Distillation for Magnesium Recycling

    Science.gov (United States)

    Zhu, Tianbai; Li, Naiyi; Mei, Xiaoming; Yu, Alfred; Shang, Shixiang

    Magnesium recycling now becomes a very important subject as magnesium consumption increases fast around the world. All commonly used magnesium die-casting alloys can be recycled and recovered to the primary metal quality. The recycled materials may be comprised of biscuits, sprues, runners, flash, overflows, dross, sludge, scrap parts, and old parts that are returned from service, An innovative magnesium recycle method, vacuum distillation, is developed and proved out to be able to recycle magnesium scraps, especially machining chips, oily magnesium, smelting sludge, dross or the mixture. With this process at a specific temperature and environment condition, magnesium in scraps can be gasified and then solidified to become crystal magnesium crown. This `recycled' magnesium crown is collected and used as the raw material of magnesium alloys. The experimental results show the vacuum distillation is a feasible and plausible method to recycle magnesium. Further, the cost analysis will be addressed in this paper.

  19. Cold Vacuum Drying (CVD) Set Point Determination

    Energy Technology Data Exchange (ETDEWEB)

    PHILIPP, B.L.

    2000-01-12

    This document provides the calculations used to determine the error of safety class signals used for the CVD process These errors are used with the Parameter limits to arrive at the initial set point. The Safety Class Instrumentation and Control (SCIC) system provides active detection and response to process anomalies that, if unmitigated would result in a safety event. Specifically actuation of the SCIC system includes two portions. The portion which isolates the MCO and initiates the safety-class helium (SCHe) purge, and the portion which detects and stops excessive heat input to the MCO on high tempered water MCO inlet temperature. For the MCO isolation and purge the SCIC receives signals from MCO pressure (both positive pressure and vacuum) helium flow rate, bay high temperature switches, seismic trips and time under vacuum trips.

  20. The vacuum impedance and unit systems

    CERN Document Server

    Kitano, M

    2006-01-01

    In electromagnetism, the vacuum impedance $Z_0$ is a universal constant, which is as important as the velocity of light $c$ in vacuum. Unfortunately, however, its significance does not seem to be appreciated so well and sometimes the presence itself is ignored. It is partly because in the Gaussian system of units, which has widely been used for long time, $Z_0$ is a dimensionless constant and of unit magnitude. In this paper, we clarify that $Z_0$ is a fundamental parameter in electromagnetism and plays major roles in the following scenes: reorganizing the structure of the electromagnetic formula in reference to the relativity; renormalizing the quantities toward natural unit systems starting from the SI unit system; and defining the magnitudes of electromagnetic units.

  1. Chiral Vacuum Fluctuations in Quantum Gravity

    Science.gov (United States)

    Magueijo, João; Benincasa, Dionigi M. T.

    2011-03-01

    We examine tensor perturbations around a de Sitter background within the framework of Ashtekar’s variables and its cousins parameterized by the Immirzi parameter γ. At the classical level we recover standard cosmological perturbation theory, with illuminating insights. Quantization leads to real novelties. In the low energy limit we find a second quantized theory of gravitons which displays different vacuum fluctuations for right and left gravitons. Nonetheless right and left gravitons have the same (positive) energies, resolving a number of paradoxes suggested in the literature. The right-left asymmetry of the vacuum fluctuations depends on γ and the ordering of the Hamiltonian constraint, and it would leave a distinctive imprint in the polarization of the cosmic microwave background, thus opening quantum gravity to observational test.

  2. Essence of the Vacuum Quark Condensate

    Energy Technology Data Exchange (ETDEWEB)

    Brodsky, Stanley J.; /SLAC /Southern Denmark U., CP3-Origins; Roberts, Craig D.; /Argonne, PHY /Peking U.; Shrock, Robert; /YITP, Stony Brook; Tandy, Peter C.; /Kent State U.

    2010-08-25

    We show that the chiral-limit vacuum quark condensate is qualitatively equivalent to the pseudoscalar meson leptonic decay constant in the sense that they are both obtained as the chiral-limit value of well-defined gauge-invariant hadron-to-vacuum transition amplitudes that possess a spectral representation in terms of the current-quark mass. Thus, whereas it might sometimes be convenient to imagine otherwise, neither is essentially a constant mass-scale that fills all spacetime. This means, in particular, that the quark condensate can be understood as a property of hadrons themselves, which is expressed, for example, in their Bethe-Salpeter or light-front wavefunctions.

  3. Effective "Gluon" Dynamics in a Stochastic Vacuum

    CERN Document Server

    Magpantay, J A

    2002-01-01

    Using the new scalar and vector degrees of freedom derived from the non-linear gauge condition (grad-dot-D)(grad-dot-A)=0, we show that the effective dynamics of the vector fields (identified as ``gluons'') in the stochastic vacuum defined by the scalars result in the vector fields acquiring a mass. We also find the vector fields losing their self-interactions.

  4. The Planck Vacuum and the Schwarzschild Metrics

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2009-07-01

    Full Text Available The Planck vacuum (PV is assumed to be the source of the visible universe. So under conditions of sufficient stress, there must exist a pathway through which energy from the PV can travel into this universe. Conversely, the passage of energy from the visible universe to the PV must also exist under the same stressful conditions. The following examines two versions of the Schwarzschild metric equation for compatability with this open-pathway idea.

  5. Fundamental Mechanisms Affecting Friction Welding under Vacuum

    Science.gov (United States)

    1991-06-01

    z Professor Koichi Masubuchi Ocean Engineering Dept., Thesis Supervisor ~Certified by - CProfessor Ltmest Rabinowicz Mechanical Engineering Dept...welding and oxide layer affects. 60 REFERENCES 1. Rabinowicz ,E., "Friction and Wear of Materials", Wiley, 1964 2. SmithM., "Effect of Vacuum on the...Professor ELnest Rabinowicz Mechanical Engineering Dept., Thesis Reader Accepted by- 14,~/G 1, ~ Z a- ’A. Douglas Carn-chtir,-hirman Departmental Graduate

  6. Probing the Higgs vacuum with general relativity

    Science.gov (United States)

    Mannheim, Philip D.; Kazanas, Demosthenes

    1991-01-01

    It is shown that the structure of the Higgs vacuum can be revealed in gravitational experiments which probe the Schwarzschild geometry to only one order in MG/r beyond that needed for the classical tests of general relativity. The possibility that deviations from the conventional geometry are at least theoretically conceivable is explored. The deviations obtained provide a diagnostic test for searching for the existence of macroscopic scalar fields and open up the possiblity for further exploring the Higgs mechanism.

  7. European Research on THz Vacuum Amplifiers

    DEFF Research Database (Denmark)

    Brunetti, F.; Cojocarua, C.-S.; de Rossi, A.

    2010-01-01

    The OPTHER (OPtically Driven TeraHertz AmplifiERs) project represents a considerable advancement in the field of high frequency amplification. The design and realization of a THz amplifier within this project is a consolidation of efforts at the international level from the main players of the Eu...... of the European research, academy and industry in vacuum electronics. This paper describes the status of the project and progress towards the THz amplifier realization....

  8. Characteristics of vacuum sintered stainless steels

    OpenAIRE

    Z. Brytan; L.A. Dobrzański; M. Actis Grande; Rosso, M.

    2009-01-01

    Purpose: In the present study duplex stainless steels were sintered in vacuum. using rapid cooling form the mixture of prealloyed and alloying element powders The purpose of this paper was to describe the obtained microstructures after sintering as well as the main mechanical properties of sintered stainless steels.Design/methodology/approach: In presented work duplex stainless steels were obtained through powder metallurgy starting from austenitic 316L or ferritic 410L prealloyed stainless s...

  9. Vacuum stability from vector dark matter

    CERN Document Server

    Duch, Mateusz; McGarrie, Moritz

    2015-01-01

    We study a model of vector dark matter with the complex scalar Higgs portal. Renormalisation group equations at the 2-loop level are used to analyse perturbativity and stability of the vacuum. We impose experimental and theoretical constraints on the model and find regions in the parameter space consistent with the dark matter relic abundance inferred from the Planck data and bounds on DM-nucleon scattering cross-section from XENON and LUX experiments.

  10. Cold Vacuum Drying Facility hazard analysis report

    Energy Technology Data Exchange (ETDEWEB)

    Krahn, D.E.

    1998-02-23

    This report describes the methodology used in conducting the Cold Vacuum Drying Facility (CVDF) hazard analysis to support the CVDF phase 2 safety analysis report (SAR), and documents the results. The hazard analysis was performed in accordance with DOE-STD-3009-94, Preparation Guide for US Department of Energy Nonreactor Nuclear Facility Safety Analysis Reports, and implements the requirements of US Department of Energy (DOE) Order 5480.23, Nuclear Safety Analysis Reports.

  11. Quantization of massive Weyl fields in vacuum

    CERN Document Server

    Dvornikov, Maxim

    2013-01-01

    We briefly review the main methods for the description of massive Weyl fields in vacuum. On the classical level we discuss Weyl fields expressed through Grassmann variables as well as having spinors with commuting components. In both approaches we quantize the system. We get the correct anticommutation relations between creation and annihilation operators, which result in the proper form of the total energy of the field. However, the commuting classical Weyl fields require the new method of quantization.

  12. Pulsed squeezed vacuum characterization without homodyning

    CERN Document Server

    Wenger, J; Tualle-Brouri, R; Cerf, N J; Grangier, P; Grangier, Ph.

    2004-01-01

    Direct photon detection is experimentally implemented to measure the squeezing and purity of a single-mode squeezed vacuum state without an interferometric homodyne detection. Following a recent theoretical proposal [arXiv quant-ph/0311119], the setup only requires a tunable beamsplitter and a single-photon detector to fully characterize the generated Gaussian states. The experimental implementation of this procedure is discussed and compared with other reference methods.

  13. Task sequencing for autonomous robotic vacuum cleaners

    Science.gov (United States)

    Gorbenko, Anna; Popov, Vladimir

    2017-07-01

    Various planning problems for robotic systems are of considerable interest. One of such problems is the problem of task sequencing. In this paper, we consider the problem of task sequencing for autonomous vacuum floor cleaning robots. We consider a graph model for the problem. We propose an efficient approach to solve the problem. In particular, we use an explicit reduction from the decision version of the problem to the satisfiability problem. We present the results of computational experiments for different satisfiability algorithms.

  14. On stability of electroweak vacuum during inflation

    Directory of Open Access Journals (Sweden)

    A. Shkerin

    2015-06-01

    Full Text Available We study Coleman–De Luccia tunneling of the Standard Model Higgs field during inflation in the case when the electroweak vacuum is metastable. We verify that the tunneling rate is exponentially suppressed. The main contribution to the suppression is the same as in flat space–time. We analytically estimate the corrections due to the expansion of the universe and an effective mass term in the Higgs potential that can be present at inflation.

  15. Tentorial hemorrhage associated with vacuum extraction

    Energy Technology Data Exchange (ETDEWEB)

    Huang, L.T. [Dept. of Pediatrics, Chang Gung Memorial Hospital, Kaohsiung (Taiwan, Province of China); Lui, C.C. [Diagnostic Radiology, Chang Gung Memorial Hospital, Kaohsiung (Taiwan, Province of China)

    1995-11-01

    Neuroimages of tentorial hemorrhage associated with vacuum extraction have been rarely reported. The authors present the case of a 5-day-old newborn with this entity. CT showed retrocerebellar hemorrhage and MRI demonstrated tentorial hemorrhage extending inferiorly over the cerebellum and superiorly over the occipital regions. We believe that these imaging modalities are helpful in delineating the extent of the hemorrhage and assessing the prognosis. (orig.)

  16. Vacuum Chamber for the Booster Bending Magnets

    CERN Multimedia

    1974-01-01

    To minimize eddy currents, induced by the rising magnetic field, the chamber was made from thin stainless steel of high specific electric resistance. For mechanical stength, it was corrugated in a hydro-forming process. The chamber is curved, to follow the beam's orbital path. Under vacuum, the chamber tends to staighten, the ceramic spacer along half of its length keeps it in place (see also 7402458).

  17. Large-Area Vacuum Ultraviolet Sensors

    Science.gov (United States)

    Aslam, Shahid; Franz, David

    2012-01-01

    Pt/(n-doped GaN) Schottky-barrier diodes having active areas as large as 1 cm square have been designed and fabricated as prototypes of photodetectors for the vacuum ultraviolet portion (wavelengths approximately equal 200 nm) of the solar spectrum. In addition to having adequate sensitivity to photons in this wavelength range, these photodetectors are required to be insensitive to visible and infrared components of sunlight and to have relatively low levels of dark current.

  18. European Research on THz Vacuum Amplifiers

    DEFF Research Database (Denmark)

    Brunetti, F.; Cojocarua, C.-S.; de Rossi, A.

    2010-01-01

    The OPTHER (OPtically Driven TeraHertz AmplifiERs) project represents a considerable advancement in the field of high frequency amplification. The design and realization of a THz amplifier within this project is a consolidation of efforts at the international level from the main players of the Eu...... of the European research, academy and industry in vacuum electronics. This paper describes the status of the project and progress towards the THz amplifier realization....

  19. Hadronic Vacuum Polarization in True Muonium

    CERN Document Server

    Lamm, Henry

    2016-01-01

    The leading-order hadronic vacuum polarization contribution to the hyperfine splitting of true muonium is reevaluated in two ways. The first considers a more complex pionic form factor and better estimates of the perturbative QCD contributions. The second, more accurate method directly integrates the Drell ratio $R(s)$ to obtain $C_{1,\\rm hvp}=-0.0489(3)$. This corresponds to an energy shift in the hyperfine splitting of $\\Delta E^\\mu_{hfs,\\rm hvp}=276196(51)$ MHz.

  20. Characterization of whey cheese packaged under vacuum.

    Science.gov (United States)

    Pintado, M E; Malcata, F X

    2000-02-01

    Vacuum packaging was assayed at 4 degrees C and was tested in comparison to unpackaged counterparts, in both microbiological and physicochemical terms, in studies pertaining to the preservation of Requeijão, a traditional Portuguese whey cheese. Bacteria were absent (i.e., Broccio (France), and Anthotyro (Greece). In addition, our conclusions are particularly helpful in terms of improving the safety of Requeijão, a widely acclaimed dairy specialty.

  1. THE FRICTION OF QUARTZ IN HIGH VACUUM

    Science.gov (United States)

    the effects of surface cleanliness . Ultra-high vacuums (to 10 to the minus 10th power torr) and high temperatures (to 350 deg C) were combined with...chemical cleaning and careful handling techniques to produce the maximum surface cleanliness . The coefficient of static friction under varying...on 30-40 mesh glass balls. The coefficient of friction of smooth quartz was found to vary from 0.1 to 1.0 depending on the surface cleanliness . The

  2. On stability of electroweak vacuum during inflation

    Energy Technology Data Exchange (ETDEWEB)

    Shkerin, A., E-mail: andrey.shkerin@epfl.ch [Institut de Théorie des Phénomènes Physiques, EPFL, CH-1015 Lausanne (Switzerland); Institute for Nuclear Research of the Russian Academy of Sciences, 60th October Anniversary Prospect, 7a, 117312 Moscow (Russian Federation); Sibiryakov, S. [Institut de Théorie des Phénomènes Physiques, EPFL, CH-1015 Lausanne (Switzerland); Institute for Nuclear Research of the Russian Academy of Sciences, 60th October Anniversary Prospect, 7a, 117312 Moscow (Russian Federation); CERN Theory Division, CH-1211 Geneva 23 (Switzerland)

    2015-06-30

    We study Coleman–De Luccia tunneling of the Standard Model Higgs field during inflation in the case when the electroweak vacuum is metastable. We verify that the tunneling rate is exponentially suppressed. The main contribution to the suppression is the same as in flat space–time. We analytically estimate the corrections due to the expansion of the universe and an effective mass term in the Higgs potential that can be present at inflation.

  3. Analysis of the vacuum infusion moulding process

    OpenAIRE

    Correia, Nuno André Curado Mateus

    2004-01-01

    This thesis focuses on flow through compliant porous media with applications to the manufacturing of composites by vacuum infusion (VI). The context of this work is the need for reliability in environmentally friendly composite processing methods for composite materials. Commercial reality and the prospective application to low cost structures for the transportation industry dictate that appropriate emphasis should be put on obtaining robust simulations, ensuring reliability and progressing t...

  4. Suprathermal electrons in a vacuum spark discharge

    Energy Technology Data Exchange (ETDEWEB)

    Bashutin, O. A., E-mail: boa308@mail.ru; Savjolov, A. S., E-mail: savjolov@plasma.mephi.ru [National Research Nuclear University MEPhI (Russian Federation)

    2016-04-15

    Results of experiments on the detection of suprathermal electron beams in the plasma of a highcurrent low-inductance vacuum spark by means of space-resolved spectral X-ray polarimetry are presented. It is shown that the observed polarization of bremsstrahlung may be caused by an ~100-keV electron beam propagating along the discharge axis from the pinching region toward the anode. The influence of the discharge initiation conditions on the parameters of the generated electron beams is analyzed.

  5. Past, Present and Future of Linac 2 Vacuum System

    CERN Document Server

    Mahner, E

    2011-01-01

    This note aims to review the past, present, and future operation of CERN's Linac 2 vacuum system. The machine vacuum system layout with its major components is summarized. Operational problems arising in 2006 yielded to a leak test campaign of the whole machine, which detected a new, major leak on tank 3. Details about the mitigation of this leak are described as well as additional diagnostics installed during shutdown 2006/07. The pressure evolution of the most critical vacuum sector is analyzed. A statistics of vacuum system faults observed since 2000 is presented and compared with other systems. Finally, a perspective for the vacuum system operation until 2017/18 is outlined.

  6. CERN's vacuums honoured to the full

    CERN Multimedia

    2002-01-01

    CERN's Cristoforo Benvenuti is awarded one of the most prestigious prizes in the world of vacuum techniques     Because we constantly run into such individuals, we tend to forget that CERN has specialists with world reputations. It takes the international prizes they win to remind us of the fact. One such prize, the American Vacuum Society (AVS)'s Gaede-Langmuir Award for 2002, has gone to Cristoforo Benvenuti, Leader of the Surfaces and Materials Technologies Group in EST Division. The award, conferred once every two years, is one of the leading prizes in the vacuum field. By coincidence, its very first winner was Pierre Auger, one of CERN's founding fathers, back in 1978. Cristoforo Benvenuti, a senior physicist who joined CERN in 1966, has been singled out for his work on getter technologies. These technologies made their name at CERN with the coming of LEP, where they were used for pumping the machine. Getter is a material with the property of capturing gas molecules and thereby actin...

  7. Vacuum system for Advanced Test Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Denhoy, B.S.

    1981-09-03

    The Advanced Test Accelerator (ATA) is a pulsed linear electron beam accelerator designed to study charged particle beam propagation. ATA is designed to produce a 10,000 amp 50 MeV, 70 ns electron beam. The electron beam acceleration is accomplished in ferrite loaded cells. Each cell is capable of maintaining a 70 ns 250 kV voltage pulse across a 1 inch gap. The electron beam is contained in a 5 inch diameter, 300 foot long tube. Cryopumps turbomolecular pumps, and mechanical pumps are used to maintain a base pressure of 2 x 10/sup -6/ torr in the beam tube. The accelerator will be installed in an underground tunnel. Due to the radiation environment in the tunnel, the controlling and monitoring of the vacuum equipment, pressures and temperatures will be done from the control room through a computer interface. This paper describes the vacuum system design, the type of vacuum pumps specified, the reasons behind the selection of the pumps and the techniques used for computer interfacing.

  8. Vacuum MOCVD fabrication of high efficience cells

    Science.gov (United States)

    Partain, L. D.; Fraas, L. M.; Mcleod, P. S.; Cape, J. A.

    1985-01-01

    Vacuum metal-organic-chemical-vapor-deposition (MOCVD) is a new fabrication process with improved safety and easier scalability due to its metal rather than glass construction and its uniform multiport gas injection system. It uses source materials more efficiently than other methods because the vacuum molecular flow conditions allow the high sticking coefficient reactants to reach the substrates as undeflected molecular beams and the hot chamber walls cause the low sticking coefficient reactants to bounce off the walls and interact with the substrates many times. This high source utilization reduces the materials costs power device and substantially decreases the amounts of toxic materials that must be handled as process effluents. The molecular beams allow precise growth control. With improved source purifications, vacuum MOCVD has provided p GaAs layers with 10-micron minority carrier diffusion lengths and GaAs and GaAsSb solar cells with 20% AMO efficiencies at 59X and 99X sunlight concentration ratios. Mechanical stacking has been identified as the quickest, most direct and logical path to stacked multiple-junction solar cells that perform better than the best single-junction devices. The mechanical stack is configured for immediate use in solar arrays and allows interconnections that improve the system end-of-life performance in space.

  9. Transfer orbit stage mechanisms thermal vacuum test

    Science.gov (United States)

    Oleary, Scott T.

    1990-01-01

    A systems level mechanisms test was conducted on the Orbital Sciences Corp.'s Transfer Orbit Stage (TOS). The TOS is a unique partially reusable transfer vehicle which will boost a satellite into its operational orbit from the Space Shuttle's cargo bay. The mechanical cradle and tilt assemblies will return to earth with the Space Shuttle while the Solid Rocket Motor (SRM) and avionics package are expended. A mechanisms test was performed on the forward cradle and aft tilting assemblies of the TOS under thermal vacuum conditions. Actuating these assemblies under a 1 g environment and thermal vacuum conditions proved to be a complex task. Pneumatic test fixturing was used to lift the forward cradle, and tilt the SRM, and avionics package. Clinometers, linear voltage displacement transducers, and load cells were used in the thermal vacuum chamber to measure the performance and characteristics of the TOS mechanism assembly. Incorporation of the instrumentation and pneumatic system into the test setup was not routine since pneumatic actuation of flight hardware had not been previously performed in the facility. The methods used are presented along with the problems experienced during the design, setup and test phases.

  10. The AD vacuum system construction and commissioning

    CERN Document Server

    Brouet, M; Klette, H; Strubin, Pierre M

    1999-01-01

    CERN has built a new experimental facility, called the Antiproton Decelerator (AD), by transforming two existing machines: the "Antiproton Collector" (AC) and the "Antiproton Accumulator" (AA). To achieve adequate beam performance once the antiproton beam is decelerated to its final value of 0.1 GeV/c, it was necessary to lower the average pressure by nearly two orders of magnitude. For this purpose, a large number of additional pumps were installed and a very careful preparation was applied to a variety of special machine equipment which, in its original construction, was not designed for ultra-high vacuum operation. An important improvement in the outgassing rates was achieved through an extended, mild bake-out of tanks and vacuum vessels containing large amounts of ferrite material and multi-layer thermal insulation. This paper describes the necessary modifications of the vacuum system and in more detail the various steps taken to obtain the required pressure in the low 10/sup -10/ mbar range. It will also...

  11. The AD Vacuum System Construction and Commissioning

    CERN Document Server

    Brouet, M; Klette, H; Strubin, Pierre M

    1999-01-01

    CERN has built a new experimental facility, called the Antiproton Decelerator (AD), by transforming two existing machines: the "Antiproton Collector" (AC) and the "Antiproton Accumulator" (AA). To achieve adequate beam performance once the antiproton beam is decelerated to its final value of 0.1 GeV/c, it was necessary to lower the average pressure by nearly two orders of magnitude. For this purpose, a large number of additional pumps were installed and a very careful preparation was applied to a variety of special machine equipment which, in its original construction, was not designed for ultra-high vacuum operation. An important improvement in the outgassing rates was achieved through an extended, mild bake-out of tanks and vacuum vessels containing large amounts of ferrite material and multi-layer thermal insulation. This paper describes the necessary modifications of the vacuum system and in more detail the various steps taken to obtain the required pressure in the low 10-10 mbar range. It will also repor...

  12. Retinal haemorrhages in vacuum extraction deliveries

    Directory of Open Access Journals (Sweden)

    Bahgat Mostafa

    1987-01-01

    Full Text Available Two hundred and thirty eight newly born infants were subjected to fundus examination in the first 5 hours of labour then daily till discharge from the hospital then weekly till complete absorption of retinal haemorrhages The 238 infants were 23 delivered by caesarean section, 90 with spontaneous vaginal delivery,45 babies (over3.5 kgm delivered vaginallyand80 delivered by vacuum extraction. It was found that 37.39% of the newborns had retinal haemorrhages. The incidence, type and severity of retinal haemorrhages were related to the extent of obstetric trauma during birth. They were least with caesarean section. (4.35%, more in babies with spontaneous vaginal delivery (20%, more higher in infants over 3.5 kgm birth weight (33.33% and maximum in vacuum extraction deliveries (68.75%. A good correlation was made between the site and duration of cup application, level and rate of increase of negative pressure, the presence and size of cephalhematoma and the incidence and severity of retinal haemorrhages A good choice of cases as well as good control of the technique of vacuum extraction will minimize the incidence and severity of retinal haemorrhages in the new born.

  13. Vacuum statistics and stability in axionic landscapes

    CERN Document Server

    Masoumi, Ali

    2016-01-01

    We investigate vacuum statistics and stability in random axionic landscapes. For this purpose we developed an algorithm for a quick evaluation of the tunneling action, which in most cases is accurate within 10%. We find that stability of a vacuum is strongly correlated with its energy density, with lifetime rapidly growing as the energy density is decreased. The probability $P(B)$ for a vacuum to have a tunneling action $B$ greater than a given value declines as a slow power law in $B$. This is in sharp contrast with the studies of random quartic potentials, which found a fast exponential decline of $P(B)$. Our results suggest that the total number of relatively stable vacua (say, with $B> 100$) grows exponentially with the number of fields $N$ and can get extremely large for $N\\gtrsim 100$. The problem with this kind of model is that the stable vacua are concentrated near the absolute minimum of the potential, so the observed value of the cosmological constant cannot be explained without fine-tuning. To addr...

  14. Air injection vacuum blower noise control

    Energy Technology Data Exchange (ETDEWEB)

    Mose, Tyler L.A.; Faszer, Andrew C. [Noise Solutions Inc. (Canada)], email: tmose@noisesolutions.com, email: afaszer@noisesolutions.com

    2011-07-01

    Air injection vacuum blowers, with applications in waste removal, central vacuum systems, and aeration systems, are widely used when high vacuum levels are required. Noise generated by those blowers must be addressed for operator health and residential disturbance. This paper describes a project led by Noise Solutions Inc., to identify noise sources in a blower, and design and test a noise mitigation system. First the predominant noise sources in the blower must be determined, this is done with a sound level meter used to quantify the contribution of each individual noise source and the dominant tonal noise from the blower. Design of a noise abatement system must take into account constraints arising from blower mobile use, blower optimal performance, and the resulting overall vibration of the structure. The design was based on calculations from the sound attenuation of a reactive expansion chamber and two prototypes of custom silencers were then tested, showing a significant noise reduction both in total sound levels and tonal noise.

  15. Flavor Symmetry and Vacuum Aligned Mass Textures

    CERN Document Server

    Kaneko, S; Shingai, T; Tanimoto, M; Yoshioka, K; Kaneko, Satoru; Sawanaka, Hideyuki; Shingai, Takaya; Tanimoto, Morimitsu; Yoshioka, Koichi

    2007-01-01

    The mass matrix forms of quarks and leptons are discussed in theory with permutation flavor symmetry. The structure of scalar potential is analyzed in case that electroweak doublet Higgs fields have non-trivial flavor symmetry charges. We find that realistic forms of mass matrices are obtained dynamically in the vacuum of the theory, where some of Higgs bosons have vanishing expectation values which lead to vanishing elements in quark and lepton mass matrices. Mass textures are realized in the true vacuum and their positions are controlled by flavor symmetry. An interesting point is that, due to the flavor group structure, the up and down quark mass matrices are automatically made different in the vacuum, which lead to non-vanishing generation mixing. It is also discussed that flavor symmetry is needed to be broken in order not to have too light scalars. The lower bounds of Higgs masses are derived from the experimental data of flavor-changing rare processes such as the neutral K meson mixing.

  16. Discovery Monday: Much ado about nothing: vacuums

    CERN Multimedia

    2004-01-01

    Most people seem to agree that an empty space has nothing in it. But what about the physicists? "Wait a minute!", they will tell you, at the Microcosm's next Discovery Monday on 5th April, for they know that even interstellar space is not as empty as it might seem... Because particles, the tiny constituents of matter, are everywhere. Even the most sophisticated vacuum pumps cannot get rid of them all. What's more, energy is omnipresent in the Universe. Energy has the habit of turning itself into matter then disappearing, only to come back again as energy... and all this in the twinkling of an eye. Hence the term "virtual matter". A completely empty space simply does not exist. Vacuums are of vital importance to CERN's physicists. In the accelerators, it is essential to obtain the best possible vacuum inside the tube through which the particles travel, in order to avoid interference from other, stray particles. To this end they use "getter" strips, which act like fly traps. When these strip...

  17. Nucleation of vacuum bubbles in Brans-Dicke type theory

    CERN Document Server

    Kim, Hongsu; Lee, Wonwoo; Lee, Young Jae; Yeom, Dong-han

    2010-01-01

    In this paper, we study nucleation of vacuum bubbles in the Brans-Dicke type theory of gravity. In the Euclidean signatures, we calculate field combinations of vacuum bubbles as solutions of Einstein and field equations as well as their probabilities by integrating the Euclidean action. We illustrate three possible ways to obtain vacuum bubbles: true vacuum bubbles for $\\omega$ > -3/2, false vacuum bubbles for $\\omega$ -3/2 when the vacuum energy of the false vacuum in the potential of the Einstein frame is less than that of the true vacuum. After the bubble is nucleated at the t = 0 surface, we can smoothly connect and match the field combinations to some solutions of the Lorentzian signatures and consistently continue their subsequent evolutions. Therefore, we conclude that, in general scalar-tensor theories or Brans-Dicke type theories, which include some models of string theory, vacuum bubbles are allowed not only in the form of true vacuum bubbles but also false vacuum bubbles, as long as a special cond...

  18. Effect of Vacuum Packaging on Storage Quality of Peanut

    Institute of Scientific and Technical Information of China (English)

    Anjian WANG; Shuaiping GAO; Guangrui TIAN; Lina LIU

    2016-01-01

    The purpose of the study is to investigate the effect of vacuum packaging on storage quality of peanut. The acid value,peroxide value,relative conductivity,mildew rate and germination rate of peanut were examined in both vacuum-packed bags and control packaging bags.The results showed that the acid value,peroxide value,relative conductivity and mildew rate of peanut were maintained at a lower level and germination rate was maintained at a higher level in vacuum-packed bags than in control packaging bags. The storage quality of peanut in vacuum-packed bags was better than in control packaging bags. The order of different vacuum degree of vacuum-packed bags from good to bad according to storage quality of peanut was- 0. 06 MPa >- 0. 09 MPa >- 0. 03 MPa,and- 0. 06 MPa was the most beneficial vacuum degree for the peanut storage.

  19. Very-Low-Cost, Rugged Vacuum System

    Science.gov (United States)

    Kline-Schoder, Robert; Sorensen, Paul; Passow, Christian; Bilski, Steve

    2013-01-01

    NASA, DoD, DHS, and commercial industry have a need for miniaturized, rugged, low-cost vacuum systems. Recent advances in sensor technology have led to the development of very small mass spectrometer detectors as well as other miniature analytical instruments. However, the vacuum systems to support these sensors remain large, heavy, and power-hungry. To meet this need, a miniaturized vacuum system was created based on a very small, rugged, and inexpensive- to-manufacture molecular drag pump (MDP). The MDP is enabled by the development of a miniature, veryhigh- speed, rugged, low-power, brushless DC motor optimized for wide temperature operation and long life. Such a pump represents an order-of-magnitude reduction in mass, volume, and cost over current, commercially available, state-ofthe- art vacuum pumps. The vacuum system consists of the MDP coupled to a ruggedized rough pump (for terrestrial applications or for planets with substantial atmospheres). The rotor in the MDP consists of a simple smooth cylinder of aluminum spinning at approximately 200,000 RPM inside an outer stator housing. The pump stator comprises a cylindrical aluminum housing with one or more specially designed grooves that serve as flow channels. To minimize the length of the pump, the gas is forced down the flow channels of the outer stator to the base of the pump. The gas is then turned and pulled toward the top through a second set of channels cut into an inner stator housing that surrounds the motor. The compressed gas then flows down channels in the motor housing to the exhaust port of the pump. The exhaust port of the pump is connected to a diaphragm or scroll pump. This pump delivers very high performance in a very small envelope. The design was simplified so that a smaller compression ratio, easier manufacturing process, and enhanced ruggedness can be achieved at the lowest possible cost. The machining of the rotor and stators is very simple compared to that necessary to fabricate TMP

  20. External Cylindrical Nozzle with Controlled Vacuum

    Directory of Open Access Journals (Sweden)

    V. N. Pil'gunov

    2015-01-01

    Full Text Available There is a developed design of the external cylindrical nozzle with a vacuum camera. The paper studies the nozzle controllability of flow rate via regulated connection of the evacuated chamber to the atmosphere through an air throttle. Working capacity of the nozzle with inlet round or triangular orifice are researched. The gap is provided in the nozzle design between the external wall of the inlet orifice and the end face of the straight case in the nozzle case. The presented mathematical model of the nozzle with the evacuated chamber allows us to estimate the expected vacuum amount in the compressed section of a stream and maximum permissible absolute pressure at the inlet orifice. The paper gives experimental characteristics of the fluid flow process through the nozzle for different values of internal diameter of a straight case and an extent of its end face remoteness from an external wall of the inlet orifice. It estimates how geometry of nozzle constructive elements influences on the volume flow rate. It is established that the nozzle capacity significantly depends on the shape of inlet orifice. Triangular orifice nozzles steadily work in the mode of completely filled flow area of the straight case at much more amounts of the limit pressure of the flow. Vacuum depth in the evacuated chamber also depends on the shape of inlet orifice: the greatest vacuum is reached in a nozzle with the triangular orifice which 1.5 times exceeds the greatest vacuum with the round orifice. Possibility to control nozzle capacity through the regulated connection of the evacuated chamber to the atmosphere was experimentally estimated, thus depth of flow rate regulation of the nozzle with a triangular orifice was 45% in comparison with 10% regulation depth of the nozzle with a round orifice. Depth of regulation calculated by a mathematical model appeared to be much more. The paper presents experimental dependences of the flow coefficients of nozzle input orifice